BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042193
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/760 (75%), Positives = 657/760 (86%), Gaps = 7/760 (0%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241
NEVGYDDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPGTGKTLIARAV
Sbjct: 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKT+G
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
EVERRIVSQLLTLMDGLK RAHV+VM ATNRPNSIDPALRRFGRFDRE+DIG+PD GRL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 362 EVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
E+ +IHTKNMKLA+DVDLE+VA +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETID
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438
Query: 422 AEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVE 481
AEV+NS+AVT + FR AL SNPSALRETVVEVP V+WEDIGGLE VKRELQE VQYPVE
Sbjct: 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVE 498
Query: 482 HPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEAN 541
HP+KF KFG++PSKGVLFYGPPGCGKTLLAKAIANECQANF+S+KGPELLTMWFGESEAN
Sbjct: 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 558
Query: 542 VREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVF 601
VREIFDKARQ+APCVLFFDELDSIA +NQ+LTEMDGM+ KK VF
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 602 IIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARY 661
IIGATNRPD+IDPA+LRPGRLDQLIYIPLPDE SR+ I KA LRKSP++ DVDL LA+
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 662 THGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEV---DDVDEITAAH 718
T+GFSGAD+TEICQRACK AIRE+IE R + ++ NP AMEV D V EI H
Sbjct: 679 TNGFSGADLTEICQRACKLAIRESIES---EIRRERERQTNPSAMEVEEDDPVPEIRRDH 735
Query: 719 FEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSDFRFP 758
FEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRFP
Sbjct: 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/760 (75%), Positives = 657/760 (86%), Gaps = 7/760 (0%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241
NEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPGTGKTLIARAV
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKT+G
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
EVERRIVSQLLTLMDGLK RAHV+VM ATNRPNSIDPALRRFGRFDRE+DIG+PD GRL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 362 EVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
E+ +IHTKNMKLA+DVDLE+VA +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETID
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438
Query: 422 AEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVE 481
AEV+NS+AVT + FR AL SNPSALRETVVEVP V+WEDIGGLE VKRELQE VQYPVE
Sbjct: 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVE 498
Query: 482 HPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEAN 541
HP+KF KFG++PSKGVLFYGPPGCGKTLLAKAIANECQANF+S+KGPELLTMWFGESEAN
Sbjct: 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 558
Query: 542 VREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVF 601
VREIFDKARQ+APCVLFFDELDSIA +NQ+LTEMDGM+ KK VF
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 602 IIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARY 661
IIGATNRPD+IDPA+LRPGRLDQLIYIPLPDE SR+ I KA LRKSP++ DVDL LA+
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 662 THGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEV---DDVDEITAAH 718
T+GFSGAD+TEICQRACK AIRE+IE R + ++ NP AMEV D V EI H
Sbjct: 679 TNGFSGADLTEICQRACKLAIRESIES---EIRRERERQTNPSAMEVEEDDPVPEIRRDH 735
Query: 719 FEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSDFRFP 758
FEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRFP
Sbjct: 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/463 (76%), Positives = 412/463 (88%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNAVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241
NEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPGTGKTLIARAV
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKT+G
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
EVERRIVSQLLTLMDGLK RAHV+VM ATNRPNSIDPALRRFGRFDRE+DIG+PD GRL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 362 EVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
E+ +IHTKNMKLA+DVDLE+VA +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETID
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438
Query: 422 AEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGG 464
AEV+NS+AVT + FR AL SNPSALRETVVEVP V+WEDIGG
Sbjct: 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 145/231 (62%), Gaps = 3/231 (1%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 517 ECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 576
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 577 XXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASR 636
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 637 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/463 (76%), Positives = 412/463 (88%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNRVVRNNLRVGLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241
NEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPGTGKTLIARAV
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKT+G
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
EVERRIVSQLLTLMDGLK RAHV+VM ATNRPNSIDPALRRFGRFDRE+DIG+PD GRL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 362 EVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
E+ +IHTKNMKLA+DVDLE+VA +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETID
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438
Query: 422 AEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGG 464
AEV+NS+AVT + FR AL SNPSALRETVVEVP V+WEDIGG
Sbjct: 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 145/231 (62%), Gaps = 3/231 (1%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 517 ECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 576
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 577 XXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASR 636
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 637 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/463 (76%), Positives = 411/463 (88%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLV GG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 139 FLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241
NEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPGTGKTLIARAV
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKT+G
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
EVERRIVSQLLTLMDGLK RAHV+VM ATNRPNSIDPALRRFGRFDRE+DIG+PD GRL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 362 EVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
E+ +IHTKNMKLA+DVDLE+VA +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETID
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438
Query: 422 AEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGG 464
AEV+NS+AVT + FR AL SNPSALRETVVEVP V+WEDIGG
Sbjct: 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 145/231 (62%), Gaps = 3/231 (1%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 517 ECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 576
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 577 XXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASR 636
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 637 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/438 (76%), Positives = 390/438 (89%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241
NEVGYDDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPGTGKTLIARAV
Sbjct: 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKT+G
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
EVERRIVSQLLTLMDGLK RAHV+VM ATNRPNSIDPALRRFGRFDRE+DIG+PD GRL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 362 EVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
E+ +IHTKNMKLA+DVDLE+VA +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETID
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438
Query: 422 AEVLNSMAVTNEHFRTAL 439
AEV+NS+AVT + FR AL
Sbjct: 439 AEVMNSLAVTMDDFRWAL 456
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 145/231 (62%), Gaps = 3/231 (1%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516
V ++D+GG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 517 ECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 576
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 577 XXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASR 636
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 637 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/304 (74%), Positives = 252/304 (82%), Gaps = 6/304 (1%)
Query: 446 ALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGC 505
ALRETVVEVP V+WEDIGGLE VKRELQE VQYPVEHP+KF KFG++PSKGVLFYGPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 506 GKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 565
GKTLLAKAIANECQANF+S+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSI
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 566 ATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQL 625
A +NQ+LTEMDGM+ KK VFIIGATNRPD+IDPA+LRPGRLDQL
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 626 IYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN 685
IYIPLPDE SR+ I KA LRKSP++ DVDL LA+ T+GFSGAD+TEICQRACK AIRE+
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240
Query: 686 IEKDIERERSGKRKRENPEAMEV---DDVDEITAAHFEESMKYARRSVSDADIRKYQLFA 742
IE R + ++ NP AMEV D V EI HFEE+M++ARRSVSD DIRKY++FA
Sbjct: 241 IES---EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 297
Query: 743 QTLQ 746
QTLQ
Sbjct: 298 QTLQ 301
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 152/222 (68%), Gaps = 3/222 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V ++D+GG+ +++ELV+ P+ HP F G+ P KG+L YGPPG GKTL+A+A+A
Sbjct: 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE 302
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DE+DSIA R G+
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 303 VER---RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
R+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D+ I I +PDE
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEA 401
R+ + + + + +A+DVDLE +A+ T+G+ GADL +C A
Sbjct: 191 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 278 bits (711), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 124/191 (64%), Positives = 156/191 (81%)
Query: 6 PNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKV 65
PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C + K+
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 62
Query: 66 GMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGS 125
M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK YF +
Sbjct: 63 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 122
Query: 126 YRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERLNEVG 185
YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE LNEVG
Sbjct: 123 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 182
Query: 186 YDDVGGVRKQM 196
YDDVGG RKQ+
Sbjct: 183 YDDVGGCRKQL 193
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 119/190 (62%), Positives = 152/190 (80%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KG KR++ VCIVL D+ C
Sbjct: 22 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCS 81
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 82 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 141
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERL 181
F +YRP+RKGD+FLVRGG+R+VEF V+ETDP YCIVAPDT I CEGEP+KREDEEE L
Sbjct: 142 FLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 201
Query: 182 NEVGYDDVGG 191
NEVGYDD+GG
Sbjct: 202 NEVGYDDIGG 211
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 181/243 (74%), Gaps = 4/243 (1%)
Query: 178 EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLI 237
+ER N V Y+D+GG+ KQM +IRE+VELPL+HP+LF+ +G++PPKGILLYGPPGTGKTL+
Sbjct: 9 DERPN-VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 238 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 297
A+AVA ET A F + G E++ K GE S ++ F+ A++ APSIIFIDEID+IA KR
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 298 K--TNGEVE-RRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGV 354
T G+ E +R + QLL MDG +R V ++GATNRP+ +DPA+ R GRFDR I++
Sbjct: 128 DALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 355 PDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVID 414
PDE GRLE+ +IHT+ M LAEDV+LE +A+ T G VGA+L A+CTEA + IRE D +
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247
Query: 415 LED 417
++D
Sbjct: 248 MDD 250
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 155/234 (66%)
Query: 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLL 510
V E PNV +EDIGGLE +E++E V+ P++HPE FEK G+ P KG+L YGPPG GKTLL
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 511 AKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 570
AKA+A E A F+ V G EL+ + GE + V++IF A++ AP ++F DE+D+IA +
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 571 XXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630
L QLL EMDG +A+ V IIGATNRPD++DPA+LRPGR D++I +P
Sbjct: 128 DALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 631 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
PDE RL+I K RK ++ DV+L +A+ T G GA++ IC A AIRE
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 182/286 (63%), Gaps = 22/286 (7%)
Query: 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKA 513
VPNV+W DIG LE ++ EL + PV +P++F+ GL GVL GPPGCGKTLLAKA
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 514 IANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXX 573
+ANE NF+SVKGPELL M+ GESE VR++F +A+ SAPCV+FFDE+D++ +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR---RS 120
Query: 574 XXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDE 633
+NQLLTEMDG+ A++ VFI+ ATNRPD+IDPA+LRPGRLD+ +++ LP
Sbjct: 121 DRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 634 ASRLQIFKACLR---KSPISPDVDLSALA--RYTHGFSGADITEICQRACKYAIRENIEK 688
A RL I K + K P+ DV+L A+A ++GAD++ + + A A+R+
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ---- 236
Query: 689 DIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDAD 734
++ R++SG K E +++ HFEE+ K R S+S D
Sbjct: 237 EMARQKSGNEKGEL----------KVSHKHFEEAFKKVRSSISKKD 272
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 160/262 (61%), Gaps = 11/262 (4%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V + D+G + ++ + P+R+P FK++G+ P G+LL GPPG GKTL+A+AVAN
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
E+G F + GPE+++ GESE +R+ F+ A+ +AP +IF DE+D++ P+R
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 304 ERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEV 363
R+V+QLLT MDGL++R V +M ATNRP+ IDPA+ R GR D+ + +G+P RL +
Sbjct: 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186
Query: 364 FRIHTKNMK---LAEDVDLERVARDTH--GYVGADLAALCTEAALQCIREKMDVIDLEDE 418
+ TKN L DV+LE +A D Y GADL+AL EA++ +R++M +E
Sbjct: 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNE 246
Query: 419 TIDAEVLNSMAVTNEHFRTALE 440
+ V+++HF A +
Sbjct: 247 K------GELKVSHKHFEEAFK 262
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 141/174 (81%)
Query: 6 PNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKV 65
PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C + K+
Sbjct: 5 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 64
Query: 66 GMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGS 125
M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK YF +
Sbjct: 65 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 124
Query: 126 YRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEE 179
YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGEP+KREDEEE
Sbjct: 125 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 178
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 103/169 (60%), Positives = 134/169 (79%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 19 QKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGE 170
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGE
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 187
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 103/169 (60%), Positives = 134/169 (79%)
Query: 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCE 61
+K PNRL++DEAIN+DNSV+++ MD+LQ F+GDTVL+KGKKR++ VCIVL D+ C
Sbjct: 18 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 77
Query: 62 ESKVGMXXXXXXXXXXXXGDLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSY 121
+ K+ M GD++S+ CPDVKYG+R+H+LPIDDT+EG+TG+LF+ YLK Y
Sbjct: 78 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 137
Query: 122 FTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGE 170
F +YRP+RKGD+FLVRGG+R+VEFKV+ETDP YCIVAPDT I CEGE
Sbjct: 138 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 186
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 169/253 (66%), Gaps = 6/253 (2%)
Query: 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIA 238
E++ + YD VGG+ KQ+ +I+E++ELP++HP+LF+S+G+ PKG++LYGPPGTGKTL+A
Sbjct: 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199
Query: 239 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 298
RAVA+ T F ++G E++ K GE +R+ F A ++APSIIF+DEIDSI R +
Sbjct: 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE 259
Query: 299 TNG----EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGV 354
+G EV+R ++ +LL +DG ++ ++ ++ ATNR + +DPAL R GR DR+I+
Sbjct: 260 GSGGGDSEVQRTML-ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 355 PDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVID 414
P R E+ RIH++ M L ++L +VA +G GAD+ +CTEA + +RE+ +
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVT 378
Query: 415 LED-ETIDAEVLN 426
ED E +V+N
Sbjct: 379 QEDFELAVGKVMN 391
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 144/234 (61%)
Query: 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLL 510
V +VP+ +++ +GGL +E++E ++ PV+HPE FE G++ KGV+ YGPPG GKTLL
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 511 AKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 570
A+A+A+ F+ V G EL+ + GE VRE+F AR+ AP ++F DE+DSI +
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258
Query: 571 XXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630
+ +LL ++DG K + II ATNR D++DPALLRPGR+D+ I P
Sbjct: 259 EGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 631 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
P A+R +I + RK ++ ++L +A +G SGAD+ +C A YA+RE
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 153/235 (65%), Gaps = 3/235 (1%)
Query: 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET 245
Y D+GG+ Q+ +I+E VELPL HP+L++ +G+KPPKG++LYG PGTGKTL+A+AVAN+T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 246 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVER 305
A F I G E++ K G+ R+ F+ A +NAPSI+FIDEID+I KR +N ER
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 306 ---RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 362
R + +LL +DG R V V+ ATN+ ++DPAL R GR DR+I PD + +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 363 VFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
+ IHT M L+EDV+LE + GAD+ A+CTEA L +RE+ + ED
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 139/230 (60%)
Query: 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAI 514
P S+ DIGGLE+ +E++E+V+ P+ HPE +E+ G+ P KGV+ YG PG GKTLLAKA+
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 515 ANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXX 574
AN+ A F+ + G EL+ + G+ R+IF A ++AP ++F DE+D+I T+
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 575 XXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEA 634
+ +LL ++DG + + V +I ATN+ + +DPAL+RPGR+D+ I PD +
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 635 SRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
++ +I K +S DV+L L SGADI +C A A+RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 162/238 (68%), Gaps = 3/238 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
E+ +D +GG+ +Q+ ++RE++ELPL++P++F+ +G+KPPKG+LLYGPPGTGKTL+A+AVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTN 300
GA F I+ K GES +R+ F A+++ P IIF+DE+D+I +R E T+
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 301 GEVE-RRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
+ E +R + +LLT MDG + ++ ATNRP+++DPAL R GR DR+++I +P+E G
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
RLE+F+IHT +K + D E + + G+ GAD+ TEA IR+ D I+ +D
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 147/244 (60%)
Query: 442 SNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYG 501
++P T E ++++ IGGL REL+E ++ P+++PE F++ G+ P KGVL YG
Sbjct: 163 TDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222
Query: 502 PPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 561
PPG GKTLLAKA+A ANF+ ++ + GES +RE+F A++ PC++F DE
Sbjct: 223 PPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 562 LDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGR 621
+D+I + L +LLT+MDG + II ATNRPD +DPALLRPGR
Sbjct: 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342
Query: 622 LDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYA 681
LD+ + IPLP+EA RL+IFK K + + D A + + GF+GADI A +A
Sbjct: 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402
Query: 682 IREN 685
IR++
Sbjct: 403 IRDD 406
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
++ D+ G + K E+ E V+Y + P +F+K G KGVL GPPG GKTLLAKAIA E
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 518 CQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXX 577
+ F ++ G + + M+ G + VR++F++A+++APC++F DE+D++ Q
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 578 XXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRL 637
LNQ+L EMDG + + +I ATNRPDV+DPALLRPGR D+ + + LPD R
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 638 QIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN 685
QI K +R+ P++PD+D + +AR T GFSGAD+ + A +A R N
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 147/233 (63%), Gaps = 4/233 (1%)
Query: 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET 245
+ DV G + ++ ELVE LR P F+ +G K PKG+L+ GPPGTGKTL+A+A+A E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 246 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--NGEV 303
FF I+G + + G S +R FE+A+K AP IIFIDEID++ +R G
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 304 ER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 362
ER + ++Q+L MDG + ++V+ ATNRP+ +DPAL R GRFDR++ +G+PD GR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 363 VFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL 415
+ ++H + + LA D+D +AR T G+ GADLA L EAAL R V+ +
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V Y DVGG + Q+ ++RE+VELPL P+ F ++G+ PPKGILLYGPPGTGKTL ARAVA
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTN 300
N T A F + G E++ K GE +R+ FE A IIF DEID++ R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 301 GEVE-RRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
G+ E +R + +L+T +DG R ++ VM ATNRPN++DPAL R GR DR+++ +PD G
Sbjct: 325 GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
R +FRIH+K+M + + E ++R GA+L ++CTEA + IR + V +D
Sbjct: 385 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 442
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 139/241 (57%)
Query: 443 NPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGP 502
+PS TV E P+V++ D+GG + +L+E V+ P+ PE+F G+ P KG+L YGP
Sbjct: 192 DPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGP 251
Query: 503 PGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 562
PG GKTL A+A+AN A F+ V G EL+ + GE VRE+F+ AR C++FFDE+
Sbjct: 252 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI 311
Query: 563 DSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRL 622
D++ + +L+T++DG + + + ++ ATNRP+ +DPALLRPGR+
Sbjct: 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRI 371
Query: 623 DQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAI 682
D+ + LPD R IF+ + + + ++R +GA++ +C A +AI
Sbjct: 372 DRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431
Query: 683 R 683
R
Sbjct: 432 R 432
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 157/243 (64%), Gaps = 6/243 (2%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPGTGKTL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--NG 301
E FF I+G + + G + +R F +A+ +AP I+FIDEID++ R G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 302 EVER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 360
ER + ++QLL MDG S+ ++VM ATNRP+ +DPAL R GRFD++I + PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 361 LEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED--E 418
++ IHT+N LAEDV+LE +A+ T G+VGADL L EAAL RE D I ++D E
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 419 TID 421
ID
Sbjct: 252 AID 254
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 139/232 (59%), Gaps = 1/232 (0%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516
V+++D+GG E EL+E V++ ++ P KF + G KG+L GPPG GKTLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 517 ECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 576
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 577 XXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASR 636
LNQLL EMDG ++K+ + ++ ATNRPD++DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 637 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEK 688
+I + R P++ DV+L +A+ T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 6/243 (2%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPGTG TL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--NG 301
E FF I+G + + G + +R F +A+ +AP I+FIDEID++ R G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 302 EVER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 360
ER + ++QLL MDG S+ ++VM ATNRP+ +DPAL R GRFD++I + PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 361 LEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED--E 418
++ IHT+N LAEDV+LE +A+ T G+VGADL L EAAL RE D I ++D E
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 419 TID 421
ID
Sbjct: 252 AID 254
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 1/232 (0%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516
V+++D+GG E EL+E V++ ++ P KF + G KG+L GPPG G TLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 517 ECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 576
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 577 XXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASR 636
LNQLL EMDG ++K+ + ++ ATNRPD++DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 637 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEK 688
+I + R P++ DV+L +A+ T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 169/295 (57%), Gaps = 11/295 (3%)
Query: 419 TIDAEVLN-SMAVT-NEHFRTALEMSNPSALRETVV----EVPNVSWEDIGGLETVKREL 472
T+D E+L SM+V + H +++ P + V E P+V++ D+GGL+ K+E+
Sbjct: 125 TLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEI 184
Query: 473 QETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532
+E V+ P+ + +E+ G+ P +GVL YGPPG GKT+L KA+AN +A F+ V G E +
Sbjct: 185 REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244
Query: 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMD 592
+ GE VR++F AR++AP ++F DE+DSIAT+ L +LLT+MD
Sbjct: 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304
Query: 593 GMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIP-LPDEASRLQIFKACLRKSPISP 651
G + V +I ATNR D +DPALLRPGRLD+ I P L D R IF K ++P
Sbjct: 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAP 364
Query: 652 DVDLSALARYTHGFSGADITEICQRACKYAIREN----IEKDIERERSGKRKREN 702
+ DL +L SGA I I Q A A+R+N ++ D+E + + K +N
Sbjct: 365 EADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 419
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 150/242 (61%), Gaps = 7/242 (2%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V Y DVGG+ Q +IRE VELPL L++ IG+ PP+G+LLYGPPGTGKT++ +AVA
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTN 300
N T A F +NG E + K GE +R F A +NAPSIIFIDE+DSIA KR +T
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 301 GEVE-RRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI-GVPDEV 358
+ E +RI+ +LLT MDG +V V+ ATNR +++DPAL R GR DR+I+ + D
Sbjct: 288 SDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347
Query: 359 GRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVI---DL 415
R +F M LA + DL+ + GA +AA+ EA L+ +R+ VI DL
Sbjct: 348 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 407
Query: 416 ED 417
E+
Sbjct: 408 EE 409
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 162/281 (57%), Gaps = 16/281 (5%)
Query: 140 GVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQI 199
GV + +++T P E+ VK + +E+ E Y DVGG+ KQ+ ++
Sbjct: 147 GVNKDSYLILDTLPSEF------------DSRVKAMEVDEKPTET-YSDVGGLDKQIEEL 193
Query: 200 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259
E + LP++ FK +G++ PKG L+YGPPGTGKTL+ARA A +T A F + P+++
Sbjct: 194 VEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253
Query: 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTNGEVERRIVSQLLTLMD 316
GE +R AF A++ AP+IIFIDE+D+I KR EK+ +R + +LL +D
Sbjct: 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313
Query: 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAED 376
G S V V+ ATNR + +DPAL R GR DR+I+ +P E R ++ +IH++ M +D
Sbjct: 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD 373
Query: 377 VDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
++ + +AR T + GA L A+ EA + +R + ED
Sbjct: 374 INWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 134/233 (57%)
Query: 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLL 510
V E P ++ D+GGL+ EL E + P++ +KF+ G+ KG L YGPPG GKTLL
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231
Query: 511 AKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 570
A+A A + A F+ + P+L+ M+ GE VR+ F A++ AP ++F DELD+I T+
Sbjct: 232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291
Query: 571 XXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630
+ +LL ++DG ++ V ++ ATNR DV+DPALLR GRLD+ I PL
Sbjct: 292 DSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
Query: 631 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIR 683
P E SR QI + RK D++ LAR T F+GA + + A A+R
Sbjct: 352 PSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V + D+ G + ++ E+V+ L++P+ + ++G K PKG+LL GPPGTGKTL+A+AVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK---TN 300
E FF + G + G S +R FE A+K APSIIFIDEID+I R +
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 301 GEVER-RIVSQLLTLMDGLKS-RAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEV 358
G ER + ++QLL MDG S A V+V+ ATNRP +DPAL R GRFDR++ + PD
Sbjct: 127 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
Query: 359 GRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIR 407
GR+E+ ++H K +KLA DV+L+ VA+ T G GADLA + EAAL R
Sbjct: 187 GRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 145/244 (59%), Gaps = 4/244 (1%)
Query: 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAK 512
E PNV ++D+ G E K E+ E V + +++PE++ G KGVL GPPG GKTLLAK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 513 AIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA-TQXXX 571
A+A E F S+ G + M+ G + VR++F+ A++ AP ++F DE+D+I ++
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 572 XXXXXXXXXXXXLNQLLTEMDGMNAKKT-VFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630
LNQLL EMDG ++ V ++ ATNRP+++DPAL+RPGR D+ + +
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 631 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDI 690
PD R++I K ++ ++ DV+L +A+ T G +GAD+ I A A R N +K++
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-QKEV 241
Query: 691 ERER 694
++
Sbjct: 242 RQQH 245
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 145/256 (56%), Gaps = 12/256 (4%)
Query: 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIA 515
VS++D+ G+ K E++E V Y ++ PE+F + G KG L GPPGCGKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 516 NECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXX 575
E Q F+++ G E + + G A VR +F +AR APC+++ DE+D++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 576 -XXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEA 634
LNQLL EMDGM V ++ +TNR D++D AL+RPGRLD+ ++I LP
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 635 SRLQIFKACLRKSPISPDVDLSA--LARYTHGFSGADITEICQRACKYAIRE-------- 684
R +IF+ L+ ++ + LA T GFSGADI IC A +A RE
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 685 NIEKDIERERSGKRKR 700
N E +ER +G K+
Sbjct: 241 NFEYAVERVLAGTAKK 256
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 138/232 (59%), Gaps = 9/232 (3%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V + DV G+ + ++RE V+ L+ P+ F +G K PKG LL GPPG GKTL+A+AVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 299
E F + G E + + G + +R F+EA AP I++IDEID++ KR T
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 300 -NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEV 358
N E E + ++QLL MDG+ + HV+V+ +TNR + +D AL R GR DR + I +P
Sbjct: 122 SNTE-EEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 359 GRLEVFRIHTKNMKLAEDVDL--ERVARDTHGYVGADLAALCTEAALQCIRE 408
R E+F H K++KL + +R+A T G+ GAD+A +C EAAL RE
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 143/242 (59%), Gaps = 1/242 (0%)
Query: 447 LRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCG 506
L + E P V+++D+ G E K EL+E V++ +++P +F + G KGVL GPPG G
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 507 KTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 566
KT LA+A+A E + F++ G + + M+ G A VR++F+ A++ APC++F DE+D++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 567 TQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLI 626
+ LNQLL EMDG + ++ ATNRPD++DPALLRPGR D+ I
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181
Query: 627 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENI 686
I PD R QI + R P++ DVDL+ LA+ T GF GAD+ + A A RE
Sbjct: 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 241
Query: 687 EK 688
K
Sbjct: 242 RK 243
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 12 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--N 300
E F +G + + G + +R FE A+++AP I+FIDEID++ KR
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 130
Query: 301 GEVER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
G ER + ++QLL MDG + +VVM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 131 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
R ++ RIH + LAEDVDL +A+ T G+VGADL L EAAL RE I ++D
Sbjct: 191 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTL 509
+ E P V+++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 510 LAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 569
LA+A+A E + F++ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 570 XXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIP 629
LNQLL EMDG + ++ ATNRPD++DPALLRPGR D+ I I
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 630 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGAD 669
PD R QI + R P++ DVDL+ LA+ T GF GAD
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 27 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--N 300
E F +G + + G + +R FE A+++AP I+FIDEID++ KR
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145
Query: 301 GEVER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
G ER + ++QLL MDG + +VVM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
R ++ RIH + LAEDVDL +A+ T G+VGADL L EAAL RE I ++D
Sbjct: 206 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 142/239 (59%), Gaps = 1/239 (0%)
Query: 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTL 509
+ E P V+++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 510 LAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 569
LA+A+A E + F++ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 570 XXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIP 629
LNQLL EMDG + ++ ATNRPD++DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 630 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEK 688
PD R QI + R P++ DVDL+ LA+ T GF GAD+ + A A RE K
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--N 300
E F +G + + G + +R FE A+++AP I+FIDEID++ KR
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 301 GEVER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
G ER + ++QLL MDG + +VVM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
R ++ RIH + LAEDVDL +A+ T G+VGADL L EAAL RE I ++D
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTL 509
+ E P V+++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 510 LAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 569
LA+A+A E + F++ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 570 XXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIP 629
LNQLL EMDG + ++ ATNRPD++DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 630 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGAD 669
PD R QI + R P++ DVDL+ LA+ T GF GAD
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--N 300
E F +G + + G + +R FE A+++AP I+FIDEID++ KR
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 301 GEVER-RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
G ER + ++QLL MDG + +VVM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417
R ++ RIH + LAEDVDL +A+ T G+VGADL L EAAL RE I ++D
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 168/320 (52%), Gaps = 26/320 (8%)
Query: 448 RETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGK 507
R ++ E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGK 73
Query: 508 TLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 567
+ LAKA+A E + F SV +L++ W GESE V+++F AR++ P ++F DE+D++
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTG 133
Query: 568 QXXXXXXXXXXXXXXXLNQLLTEMDGM-NAKKTVFIIGATNRPDVIDPALLRPGRLDQLI 626
+LL +M+G+ N + V ++GATN P +D A+ R R ++ I
Sbjct: 134 TRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRI 188
Query: 627 YIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEICQRACKYAIREN 685
YIPLPD A+R +F+ + +P + D L T G+SG+DI + + A IR+
Sbjct: 189 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 248
Query: 686 IE----KDIERERSGKRK------------RENPEAMEVDDVDE--ITAAHFEESMKYAR 727
KD+ E RK + +E D++ E +T F +++K R
Sbjct: 249 QSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTR 308
Query: 728 RSVSDADIRKYQLFAQTLQQ 747
+V++ D+ K + F + Q
Sbjct: 309 PTVNEDDLLKQEQFTRDFGQ 328
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 151/261 (57%), Gaps = 5/261 (1%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
E + FF ++ +++SK GESE +++ F A +N PSIIFIDE+D++ R + E
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEA 142
Query: 304 ERRIVSQLLTLMDGLKSRAH-VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 362
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 143 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 200
Query: 363 VFRIHTKNMK-LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
+F I+ + + D + T GY G+D+A + +A +Q IR+ +D + +
Sbjct: 201 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTE 260
Query: 422 AEVLNSMAVTNEHFRTALEMS 442
+ + + A+EMS
Sbjct: 261 DDETRKLTPCSPGDDGAIEMS 281
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 177/338 (52%), Gaps = 37/338 (10%)
Query: 432 NEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGL 491
N+ R AL SA+ + E PNV WED+ GLE K L+E V PV+ P F K
Sbjct: 30 NKKLRGALS----SAI---LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNR 81
Query: 492 SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQ 551
P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GESE V+++F AR+
Sbjct: 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 141
Query: 552 SAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGM-NAKKTVFIIGATNRPD 610
+ P ++F D++D++ +LL +M+G+ N + V ++GATN P
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPW 198
Query: 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGAD 669
+D A+ R R ++ IYIPLPD A+R +F+ + +P + D L T G+SG+D
Sbjct: 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD 256
Query: 670 ITEICQRACKYAIRENIE-----KDIERERSGKRKRENPEA-------------MEVDDV 711
I + + A IR+ I+ KD+ E RK P + +E D++
Sbjct: 257 IAVVVKDALMQPIRK-IQSATHFKDVSTEDDETRKL-TPSSPGDDGAIEMSWTDIEADEL 314
Query: 712 DE--ITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQ 747
E +T F +++K R +V++ D+ K + F + Q
Sbjct: 315 KEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 152/261 (58%), Gaps = 5/261 (1%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 166
Query: 304 ERRIVSQLLTLMDGLKSRAH-VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 362
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 224
Query: 363 VFRIHTKNM-KLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
+F I+ + + D + T GY G+D+A + +A +Q IR+ +D + +
Sbjct: 225 MFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTE 284
Query: 422 AEVLNSMAVTNEHFRTALEMS 442
+ + ++ A+EMS
Sbjct: 285 DDETRKLTPSSPGDDGAIEMS 305
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 174/336 (51%), Gaps = 33/336 (9%)
Query: 432 NEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGL 491
N+ R AL SA+ + E PNV WED+ GLE K L+E V PV+ P F K
Sbjct: 15 NKKLRGALS----SAI---LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNR 66
Query: 492 SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQ 551
P+ G+L YGPPG GK+ LAKA+A E + F SV +L++ W GESE V+++F AR+
Sbjct: 67 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 126
Query: 552 SAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGM-NAKKTVFIIGATNRPD 610
+ P ++F D++D++ +LL +M+G+ N + V ++GATN P
Sbjct: 127 NKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPW 183
Query: 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGAD 669
+D A+ R R ++ IYIPLPD A+R +F+ + +P + D L T G+SG+D
Sbjct: 184 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 241
Query: 670 ITEICQRACKYAIRE----NIEKDIERERSGKRK------------RENPEAMEVDDVDE 713
I + + A IR+ KD+ E RK + +E D++ E
Sbjct: 242 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE 301
Query: 714 --ITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQ 747
+T F +++K R +V++ D+ K + F + Q
Sbjct: 302 PDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 337
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 151/261 (57%), Gaps = 5/261 (1%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 151
Query: 304 ERRIVSQLLTLMDGLKSRAH-VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 362
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 152 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 209
Query: 363 VFRIHTKNMK-LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
+F I+ + + D + T GY G+D+A + +A +Q IR+ +D + +
Sbjct: 210 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTE 269
Query: 422 AEVLNSMAVTNEHFRTALEMS 442
+ + + A+EMS
Sbjct: 270 DDETRKLTPCSPGDDGAIEMS 290
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 165/315 (52%), Gaps = 26/315 (8%)
Query: 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAK 512
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 513 AIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 572
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 573 XXXXXXXXXXXLNQLLTEMDGM-NAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLP 631
+LL +M+G+ N + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 130 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184
Query: 632 DEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEICQRACKYAIRE----NI 686
D A+R +F+ + +P + D L T G+SG+DI + + A IR+
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
Query: 687 EKDIERERSGKRK------------RENPEAMEVDDVDE--ITAAHFEESMKYARRSVSD 732
KD+ E RK + +E D++ E +T F +++K R +V++
Sbjct: 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 304
Query: 733 ADIRKYQLFAQTLQQ 747
D+ K + F + Q
Sbjct: 305 DDLLKQEQFTRDFGQ 319
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 151/261 (57%), Gaps = 5/261 (1%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 133
Query: 304 ERRIVSQLLTLMDGLKSRAH-VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 362
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 134 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 191
Query: 363 VFRIHTKNMK-LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421
+F I+ + + D + T GY G+D+A + +A +Q IR+ +D + +
Sbjct: 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTE 251
Query: 422 AEVLNSMAVTNEHFRTALEMS 442
+ + + A+EMS
Sbjct: 252 DDETRKLTPCSPGDDGAIEMS 272
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 133/227 (58%), Gaps = 6/227 (2%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V ++D+ GV A I+E+V P+ P +F + PPKGILL+GPPGTGKTLI + +A+
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIAS 139
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
++GA FF I+ + SK GE E +R F A P++IFIDEIDS+ +R E
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199
Query: 304 ERRIVSQLLTLMDG--LKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
RRI ++ L +DG S ++V+GATNRP ID A RR R + + I +P+ R
Sbjct: 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257
Query: 362 E-VFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIR 407
+ V + +K + ++E++ + + + GAD+ LC EA+L IR
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 154/303 (50%), Gaps = 24/303 (7%)
Query: 447 LRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGL-SPSKGVLFYGPPGC 505
+ E + P V+WEDI G+E K ++E V +P+ P+ F GL P KG+L +GPPG
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT--GLRGPPKGILLFGPPGT 128
Query: 506 GKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 565
GKTL+ K IA++ A F S+ L + W GE E VR +F AR P V+F DE+DS+
Sbjct: 129 GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 188
Query: 566 ATQXXXXXXXXXXXXXXXLNQLLTEMDG--MNAKKTVFIIGATNRPDVIDPALLRPGRLD 623
+Q + L ++DG +++ + ++GATNRP ID A R RL
Sbjct: 189 LSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLV 243
Query: 624 QLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAI 682
+ +YIPLP+ ++R QI + K + ++ + + + FSGAD+T++C+ A I
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 683 RENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFA 742
R DI + D V I FE + + R SVS D+ Y+ +
Sbjct: 304 RSLQTADI-------------ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWN 350
Query: 743 QTL 745
+T
Sbjct: 351 KTF 353
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 141/233 (60%), Gaps = 7/233 (3%)
Query: 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIA 238
ER N V + DV G+ ++E V LP++ P LF P +GILL+GPPGTGK+ +A
Sbjct: 127 ERPN-VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLA 184
Query: 239 RAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 297
+AVA E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDEIDS+ R
Sbjct: 185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244
Query: 298 KTNGEVERRIVSQLLTLMDGLK-SRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPD 356
+ E RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+
Sbjct: 245 ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 302
Query: 357 EVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408
R +FR+H + + + + D + + R T GY GAD++ + +A +Q +R+
Sbjct: 303 AHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 131/237 (55%), Gaps = 9/237 (3%)
Query: 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLL 510
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 183
Query: 511 AKAIANECQ-ANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 569
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243
Query: 570 XXXXXXXXXXXXXXLNQLLTEMDGMNAKKT-VFIIGATNRPDVIDPALLRPGRLDQLIYI 628
+ L +M G+ + ++GATN P V+D A+ R R ++ IYI
Sbjct: 244 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 629 PLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
PLP+ +R +F+ L + S + D L R T G+SGADI+ I + A +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 139/234 (59%), Gaps = 9/234 (3%)
Query: 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIA 238
ER N V + DV G+ ++E V LP++ P LF P +GILL+GPPGTGK+ +A
Sbjct: 5 ERPN-VKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLA 62
Query: 239 RAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 297
+AVA E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDEIDS+ R
Sbjct: 63 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 122
Query: 298 KTNGEVERRIVSQLLTLMDGLK-SRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPD 356
+ E RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+
Sbjct: 123 ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 180
Query: 357 EVGRLEVFRIH--TKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408
R +F++H T L E D + R T GY GAD++ + +A +Q +R+
Sbjct: 181 PHARAAMFKLHLGTTQNSLTE-ADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 9/237 (3%)
Query: 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLL 510
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 61
Query: 511 AKAIANECQ-ANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 569
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 570 XXXXXXXXXXXXXXLNQLLTEMDGMNA-KKTVFIIGATNRPDVIDPALLRPGRLDQLIYI 628
+ L +M G+ + ++GATN P V+D A+ R R ++ IYI
Sbjct: 122 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 629 PLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
PLP+ +R +FK L + S + D L R T G+SGADI+ I + A +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 154/295 (52%), Gaps = 29/295 (9%)
Query: 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGL-SPSKGVLFYGPPGCGKTLLAKAI 514
V W DI G + K+ LQE V P PE F GL +P+KG+L +GPPG GKTLLA+A+
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAV 74
Query: 515 ANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXX 574
A EC A F+++ L + + G+ E VR +F AR P ++F DE+DS+ ++
Sbjct: 75 ATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH 134
Query: 575 XXXXXXXXXLNQLLTEMDGMNAK---KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLP 631
+ L E DG+ + ++ ATNRP +D A LR R + +Y+ LP
Sbjct: 135 EASRRLK---TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLP 189
Query: 632 DEASRLQIFKACLRK--SPISPDVDLSALARYTHGFSGADITEICQRACKYAIRE-NIEK 688
DE +R + L+K SP+ + L LA+ T G+SG+D+T + + A IRE N+E+
Sbjct: 190 DEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ 248
Query: 689 DIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQ 743
+ +++ + IT F S+K RRSV+ + Y+ ++Q
Sbjct: 249 --------------VKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 14/263 (5%)
Query: 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVA 242
+V + D+ G ++E+V LP P+LF + P KG+LL+GPPG GKTL+ARAVA
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVA 75
Query: 243 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE 302
E A F I+ + SK G+ E +R F A PSIIFIDE+DS+ +R + E
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 303 VERRIVSQLLTLMDGLKSRA---HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
RR+ ++ L DGL +VV+ ATNRP +D A R RF + + + +PDE
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQT 193
Query: 360 R-LEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 418
R L + R+ K + L R+A+ T GY G+DL AL +AAL+ IRE L E
Sbjct: 194 RELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE------LNVE 247
Query: 419 TIDAEVLNSM-AVTNEHFRTALE 440
+ +++M A+T + F ++L+
Sbjct: 248 QVKCLDISAMRAITEQDFHSSLK 270
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 151/287 (52%), Gaps = 26/287 (9%)
Query: 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGL-SPSKGVLFYGPPGCGKTLLAKAIA 515
V ++DI G + K+ LQE V P PE F GL +P++G+L +GPPG GKT+LAKA+A
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFT--GLRAPARGLLLFGPPGNGKTMLAKAVA 169
Query: 516 NECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXX 575
E A F ++ L + + GE E VR +F AR+ P ++F D++DS+ +
Sbjct: 170 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHD 229
Query: 576 XXXXXXXXLNQLLTEMDGMNAK--KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDE 633
+ L E DG+ + V ++GATNRP +D A+LR R + +Y+ LP+E
Sbjct: 230 ASRRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNE 284
Query: 634 ASR--LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691
+R L C + SP++ +L+ LAR T G+SG+D+T + + A IRE
Sbjct: 285 ETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTALAKDAALGPIRE------- 336
Query: 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKY 738
K E + M ++ I + F ES+K +RSVS + Y
Sbjct: 337 ------LKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 6/228 (2%)
Query: 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243
V +DD+ G ++E+V LP P+LF + P +G+LL+GPPG GKT++A+AVA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAA 170
Query: 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 303
E+ A FF I+ + SK GE E +R F A + PSIIFID++DS+ +R + +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 304 ERRIVSQLLTLMDGLKSRA--HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361
RR+ ++ L DG++S V+VMGATNRP +D A+ R RF + + + +P+E RL
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 362 EVFRIHT-KNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408
+ + K +L ++AR T GY G+DL AL +AAL IRE
Sbjct: 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 278
+P + +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 279 NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA------HVVVMGATNR 332
I+FIDEI ++ + E+ V ++ + G +R ++GAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 333 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHG 388
P I P L RFG + ++ P+E+ + + +++ E+ LE + R + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQS 552
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 553 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMN-AKKTV-------FIIG 604
+LF DE+ ++ Q + ++ + G A +T+ +IG
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAME------DFVMDIVIGQGPAARTIRLELPRFTLIG 143
Query: 605 ATNRPDVID-PALLRPGRLDQLIY 627
AT RP +I P L R G ++ L Y
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 278
+P + +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 279 NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA------HVVVMGATNR 332
I+FIDEI ++ + E+ V ++ + G +R ++GAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 333 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHG 388
P I P L RFG + ++ P+E+ + + +++ E+ LE + R + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQS 552
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 553 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMN-AKKTV-------FIIG 604
+LF DE+ ++ Q + ++ + G A +T+ +IG
Sbjct: 91 GD-ILFIDEIHRLSRQAEEHLYPAME------DFVMDIVIGQGPAARTIRLELPRFTLIG 143
Query: 605 ATNRPDVID-PALLRPGRLDQLIY 627
AT RP +I P L R G ++ L Y
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 278
+P + +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 279 NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA------HVVVMGATNR 332
I+FIDEI ++ + E+ V ++ + G +R ++GAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 333 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHG 388
P I P L RFG + ++ P+E+ + + +++ E+ LE + R + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQS 552
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 553 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTV-------FIIGA 605
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 606 TNRPDVID-PALLRPGRLDQLIY 627
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 20/122 (16%)
Query: 206 PLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI--MSKLAG 263
PLRH PK IL+ GP G GKT IAR +A A F + + + +
Sbjct: 43 PLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 264 ESESNLRK-------AFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ-LLTLM 315
E +S +R A + E+N I+FIDEID I K E + +V R V + LL L+
Sbjct: 95 EVDSIIRDLTDSAGGAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
Query: 316 DG 317
+G
Sbjct: 153 EG 154
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 476 VQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535
+Q P+ H ++P K +L GP G GKT +A+ +A A F+ V+ + + +
Sbjct: 40 LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
Query: 536 --GESEANVREIFDKARQSAPCV-----LFFDELDSI 565
E ++ +R++ D A + V +F DE+D I
Sbjct: 92 VGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 354 VPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVI 413
+PD GR +FRIH+K+M + + E ++R GA+L ++CTEA + IR + V
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 414 DLED 417
+D
Sbjct: 67 TEKD 70
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 355 PDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVID 414
P+E RL++ +IH++ M L ++L ++A G GA++ +CTEA + +RE+ +
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 415 LED 417
ED
Sbjct: 71 QED 73
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 631 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
P+E +RL I K RK ++ ++L +A G SGA++ +C A YA+RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 355 PDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVID 414
P+E RL++ +IH++ L ++L ++A G GA++ +CTEA +RE+ +
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 415 LED 417
ED
Sbjct: 63 QED 65
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 629 PLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
P P+E +RL I K RK ++ ++L +A G SGA++ +C A YA+RE
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 205 LPLRHPQLFKSIGVKPP-KGILLYGP-PGTGKTLIARAVANETGAFFFLINGPEIMSKLA 262
LP + FKSI K I+L+ P PGTGKT +A+A+ ++ A +NG +
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 263 GESESNLRKA--FEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320
+N A F+ +K +I IDE D +G E + L + M+ S
Sbjct: 90 RGPLTNFASAASFDGRQK----VIVIDEFDR--------SGLAESQ--RHLRSFMEAYSS 135
Query: 321 RAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFR 365
+++ N+ID ++ R I G P + ++E+ +
Sbjct: 136 NCSIIITA-----NNIDGIIKPLQSRCRVITFGQPTDEDKIEMMK 175
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 487 EKFGLSPSKG----VLFYGP-PGCGKTLLAKAIANECQANFVSVKGPE 529
E F SKG ++ + P PG GKT +AKA+ ++ A+ + V G +
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES----NLRKAFEE 275
P +LL GPP +GKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 276 AEKNAPSIIFIDEIDSI 292
A K+ S + +D+I+ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 492 SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESE--ANVREIFDKA 549
+P VL GPP GKT LA IA E F+ + P+ + + F E+ +++IFD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 550 RQSAPCVLFFDELDSI 565
+S + D+++ +
Sbjct: 120 YKSQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES----NLRKAFEE 275
P +LL GPP +GKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 276 AEKNAPSIIFIDEIDSI 292
A K+ S + +D+I+ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 492 SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESE--ANVREIFDKA 549
+P VL GPP GKT LA IA E F+ + P+ + + F E+ +++IFD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 550 RQSAPCVLFFDELDSI 565
+S + D+++ +
Sbjct: 121 YKSQLSCVVVDDIERL 136
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
S ++ G E VK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 518 CQANFVSVKGPELL 531
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 284 IFIDEIDSIAPKREKTNGEVERRIVSQL----LTLMDGLKSRAHVV--------VMGATN 331
+FIDEI + N VE + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 332 RPNSIDPALR-RFG 344
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
S ++ G E VK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 518 CQANFVSVKGPELL 531
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 284 IFIDEIDSIAPKREKTNGEVERRIVSQL----LTLMDGLKSRAHVV--------VMGATN 331
+FIDEI + N VE + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATV 158
Query: 332 RPNSIDPALR-RFG 344
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
S ++ G E VK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 518 CQANFVSVKGPELL 531
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 284 IFIDEIDSIAPKREKTNGEVERRIVSQL----LTLMDGLKSRAHVV--------VMGATN 331
+FIDEI + N VE + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 332 RPNSIDPALR-RFG 344
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
S ++ G E VK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 518 CQANFVSVKGPELL 531
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 284 IFIDEIDSIAPKREKTNGEVERRIVSQL----LTLMDGLKSRAHVV--------VMGATN 331
+FIDEI + N VE + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 332 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHG 388
R + LR E+D E+ E+ + M + ED E +A+ + G
Sbjct: 159 RSGLLSSPLRSAFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
S ++ G E VK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 518 CQANFVSVKGPELL 531
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 284 IFIDEIDSIAPKREKTNGEVERRIVSQL----LTLMDGLKSRAHVV--------VMGATN 331
+FIDEI + N VE + S + + +M G A + ++G+T
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTT 158
Query: 332 RPNSIDPALR-RFG 344
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 498 LFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-----------TMWFGESEANVREIF 546
+ G PG GKT +A+ +A + N V PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 547 DKARQSAPCVLFFD 560
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 225 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM-----------SKLAGESESNLRK 271
+L G PG GKT IA +A + +IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 272 AFEEAEKNAPSIIFID 287
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE 517
S ++ G E VK++L ++ E + VL GPPG G+T LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGRTTLAHIIASE 74
Query: 518 CQANFVSVKGPELL 531
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
+LL GPPG G+T +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 284 IFIDEIDSIAPKREKTNGEVERRIVSQL----LTLMDGLKSRAHVV--------VMGATN 331
+FIDEI + N VE + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 332 RPNSIDPALR-RFG 344
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 498 LFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-----------TMWFGESEANVREIF 546
+ G PG GKT +A+ +A + N V PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 547 DKARQSAPCVLFFD 560
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 225 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM-----------SKLAGESESNLRK 271
+L G PG GKT IA +A + +IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 272 AFEEAEKNAPSIIFID 287
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 195 QMAQIRELVELPLRHPQLFKSIGV---KPPKGILLYGPPGTGKTLIARAVANETGAFFFL 251
Q+A++ + L R +L ++I V + LL G G GKT IA +A + +
Sbjct: 178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA------WRI 231
Query: 252 ING--PEIM----------------SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIA 293
+ G PE+M +K G+ E + ++ E++ SI+FIDEI +I
Sbjct: 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291
Query: 294 PKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP--NSIDPALRRFGRFDREID 351
+ G+V+ L+ L S + V+G+T ++I R R ++ID
Sbjct: 292 GAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKID 345
Query: 352 IGVP 355
I P
Sbjct: 346 ITEP 349
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 356 DEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL 415
D GR +FRIH+K+ + + E ++R GA+L ++CTEA IR + V
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 416 ED 417
+D
Sbjct: 62 KD 63
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAE 277
ILL GP G+GKTL+A +A F + + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 278 KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ-----LLTLMDG 317
K I++ID+ID I+ R+ N + R + + LL L++G
Sbjct: 114 KAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKLIEG 156
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM-WFGESEAN-VREIFDK----AR 550
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 551 QSAPCVLFFDELDSIA 566
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAE 277
ILL GP G+GKTL+A +A F + + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 278 KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ-----LLTLMDG 317
K I++ID+ID I+ R+ N + R + + LL L++G
Sbjct: 114 KAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKLIEG 156
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM-WFGESEAN-VREIFDK----AR 550
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 551 QSAPCVLFFDELDSIA 566
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 224 ILLYGPPGTGKTLIARAVANE-------------TGAFFFLINGPEIMSKLAGESESNLR 270
ILL GP G+GKTL+A+ +A T A + + I+++L S+ N++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 271 KAFEEAEKNAPSIIFIDEIDSIA 293
KA I+FIDEID I+
Sbjct: 135 KA-------QKGIVFIDEIDKIS 150
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 497 VLFYGPPGCGKTLLAKAIANE-------------CQANFVSVKGPELLTMWFGESEANVR 543
+L GP G GKTL+A+ +A +A +V +LT S+ NV+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 544 EIFDKARQSAPCVLFFDELDSIA 566
KA++ ++F DE+D I+
Sbjct: 135 ----KAQKG---IVFIDEIDKIS 150
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 464 GLETVKRELQETVQYPVEHPEKFEKFGL---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 518
GL+ VK ++ET + + +K GL +P+ + F G PG GKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 519 -----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 561
+ + VSV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 464 GLETVKRELQETVQYPVEHPEKFEKFGL---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 518
GL+ VK ++ET + + +K GL +P+ + F G PG GKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 519 -----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 561
+ + VSV +L+ + G + +E+ +A VLF DE
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 222 KGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 273
+ +LL GPPGTGKT +A A+A E G+ F + G E+ S ++E N R+A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 495 KGVLFYGPPGCGKTLLAKAIANECQAN--FVSVKGPELLTMWFGESE 539
+ VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 222 KGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAFEEA 276
+ +LL GPPGTGKT +A A+A E G+ F G E+ S ++E N R+A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 277 EKNAPSIIFID 287
K P I D
Sbjct: 138 IKEGPPGIIQD 148
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 495 KGVLFYGPPGCGKTLLAKAIANECQAN--FVSVKGPELLTMWFGESE 539
+ VL GPPG GKT LA AIA E + F G E+ + ++E
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP-- 281
++L+GPPGTGKT +A +A A + I + +G E +R+A E A +N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANA-----DVERISAVTSGVKE--IREAIERARQNRNAG 105
Query: 282 --SIIFIDEI 289
+I+F+DE+
Sbjct: 106 RRTILFVDEV 115
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPC- 555
++ +GPPG GKT LA+ IA A+ + +T E +RE ++ARQ+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKE----IREAIERARQNRNAG 105
Query: 556 ---VLFFDEL 562
+LF DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 464 GLETVKRELQETVQYPVEHPEKFEKFGL---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 518
GL+ VK ++ET + + +K GL +P+ F G PG GKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 519 -----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 561
+ + VSV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 26/184 (14%)
Query: 207 LRHPQLFKSIGVKPPKGILLYGPPGTGKTLIA-RAVANETGAFFFLINGPE------IMS 259
++H ++F + + +GI+L GPPG+GKT+I A+ N + IN + I+S
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS 1312
Query: 260 KLAGESES-NLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316
L + K K+ ++F DEI+ PK +K + + QL+
Sbjct: 1313 ALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQG 1370
Query: 317 GLKS---------RAHVVVMGATNRPNSID--PALRRFGRFDREIDIGVPDEVGRLEVFR 365
K+ R H+V GA N P P RF R + +G P +++
Sbjct: 1371 FWKTPENKWVTIERIHIV--GACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1428
Query: 366 IHTK 369
I+ K
Sbjct: 1429 IYYK 1432
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLA- 511
E+P+VS E E ++ ++ ++H + F L+ +G++ GPPG GKT++
Sbjct: 1230 EIPSVSLE---AHEVMRPDIVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMN 1285
Query: 512 KAIANECQANFVSV 525
A+ N + V +
Sbjct: 1286 NALRNSSLYDVVGI 1299
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 26/184 (14%)
Query: 207 LRHPQLFKSIGVKPPKGILLYGPPGTGKTLIA-RAVANETGAFFFLIN------GPEIMS 259
++H ++F + + +GI+L GPPG+GKT+I A+ N + IN I+S
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS 1093
Query: 260 KLAGESES-NLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316
L + K K+ ++F DEI+ PK +K + + QL+
Sbjct: 1094 ALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQG 1151
Query: 317 GLKS---------RAHVVVMGATNRPNSID--PALRRFGRFDREIDIGVPDEVGRLEVFR 365
K+ R H+V GA N P P RF R + +G P +++
Sbjct: 1152 FWKTPENKWVTIERIHIV--GACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1209
Query: 366 IHTK 369
I+ K
Sbjct: 1210 IYYK 1213
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLA- 511
E+P+VS E E ++ ++ ++H + F L+ +G++ GPPG GKT++
Sbjct: 1011 EIPSVSLE---AHEVMRPDIVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMN 1066
Query: 512 KAIANECQANFVSV 525
A+ N + V +
Sbjct: 1067 NALRNSSLYDVVGI 1080
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 639 IFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN----IEKDIER 692
IF K +S +VDL SGADI ICQ + A+REN + KD E+
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 66
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 363 VFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408
+F T M L+E+VDLE GAD+ ++C E+ + +RE
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 206 PLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI--MSKLAG 263
PLRH PK IL+ GP G GKT IAR +A A F + + + +
Sbjct: 43 PLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 264 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLL 312
E +S +R + A K + IA R + E RI+ LL
Sbjct: 95 EVDSIIRDLTDSAMK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 476 VQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535
+Q P+ H ++P K +L GP G GKT +A+ +A A F+ V+ + + +
Sbjct: 40 LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
Query: 536 --GESEANVREIFDKA 549
E ++ +R++ D A
Sbjct: 92 VGKEVDSIIRDLTDSA 107
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 270 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ-LLTLMDG 317
+KA + E+N I+FIDEID I K E + +V R V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 222 KGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK----------LAGESESNLRK 271
+ +LYGPPG GKT A VA E G N ++ SK L S K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 272 AFEEAE--KNAPSIIFIDEIDSIA 293
EEA+ +I +DE+D ++
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMS 161
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 495 KGVLFYGPPGCGKTLLAKAIANE 517
+ + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 200 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-- 257
R ++ PLRH PK IL GP G GKT IAR +A A F + +
Sbjct: 37 RXQLQEPLRHE--------VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 258 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLL 312
+ + E +S +R + A K + IA R + E RI+ LL
Sbjct: 89 VGYVGKEVDSIIRDLTDSAXK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 476 VQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535
+Q P+ H ++P K +L GP G GKT +A+ +A A F+ V+ + + +
Sbjct: 40 LQEPLRHE-------VTP-KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
Query: 536 --GESEANVREIFDKA 549
E ++ +R++ D A
Sbjct: 92 VGKEVDSIIRDLTDSA 107
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 270 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ-LLTLMDG 317
+KA + E+N I+FIDEID I K E + +V R V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 222 KGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA--- 276
+ +L+ G PGTGKT IA +A G F I G EI S ++E+ L +AF +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRSIGV 129
Query: 277 --EKNAPSIIFIDEIDSIAPKRE 297
+ A + + EID I + +
Sbjct: 130 RIKAGAVHTVSLHEIDVINSRTQ 152
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FVSVKGPELLTMWFGESEANV----R 543
G + VL G PG GKT +A +A + F ++ G E+ ++ ++EA R
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 544 EIFDKARQSAPCVLFFDELDSI 565
I + + A + E+D I
Sbjct: 126 SIGVRIKAGAVHTVSLHEIDVI 147
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530
+LF GP G GKT LA I+ E AN + P +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI 91
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 283
IL GP G GKT +A ++ E A P I E +L + I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSGDLAAILTNLSEG--DI 109
Query: 284 IFIDEIDSIAPKREK 298
+FIDEI ++P E+
Sbjct: 110 LFIDEIHRLSPAIEE 124
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 221 PKG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 269
P+G I +YGP +GKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 270 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGE-------VERRIVSQLL 312
+A E A+ A II ID + ++ P+ E GE ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE-IEGEMGDSHVGLQARLMSQAL 177
Query: 313 TLMDG 317
M G
Sbjct: 178 RKMTG 182
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLING 254
PK IL+ GP G GKT IAR +A A F +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF--GESEANVREIFDKA 549
K +L GP G GKT +A+ +A A F+ V+ + + + E ++ +R++ D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLING 254
PK IL+ GP G GKT IAR +A A F +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 82
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF--GESEANVREIFDKA 549
K +L GP G GKT +A+ +A A F+ V+ + + + E ++ +R++ D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLING 254
PK IL+ GP G GKT IAR +A A F +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 89
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF--GESEANVREIFDKA 549
K +L GP G GKT +A+ +A A F+ V+ + + + E ++ +R++ D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 221 PKG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 269
P+G I +YGP +GKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 270 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGE-------VERRIVSQLL 312
+A E A+ A II ID + ++ P+ E GE ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE-IEGEMGDSHVGLQARLMSQAL 177
Query: 313 TLMDG 317
M G
Sbjct: 178 RKMTG 182
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 221 PKG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 269
P+G I +YGP +GKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 270 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGE-------VERRIVSQLL 312
+A E A+ A II ID + ++ P+ E GE ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE-IEGEMGDSHVGLQARLMSQAL 177
Query: 313 TLMDG 317
M G
Sbjct: 178 RKMTG 182
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 221 PKG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 269
P+G I +YGP +GKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 270 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGE-------VERRIVSQLL 312
+A E A+ A II ID + ++ P+ E GE ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE-IEGEMGDSHVGLQARLMSQAL 177
Query: 313 TLMDG 317
M G
Sbjct: 178 RKMTG 182
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 636 RLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN----IEKDIE 691
R IF K ++P+ DL +L SGA I I Q A A+R+N ++ D+E
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 692 RERSGKRKRENP 703
+ + K +N
Sbjct: 63 EAYATQVKTDNT 74
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 217 GVKPPKGI--LLYGPPGTGKTLIARAVANETGAFFFL 251
++ PKGI L+ G PGTGKT +A +A E F L
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 222 KGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA--- 276
+ +L+ G PGTGKT IA A G F I G EI S ++E+ L +AF +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA-LTQAFRRSIGV 144
Query: 277 --EKNAPSIIFIDEIDSIAPKREKTNG 301
++ P ++ + I +T G
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINSRTQG 171
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ 519
E+ GLE VK + E + +K K P + GPPG GKT LAK+IA
Sbjct: 81 EEHHGLEKVKERILEYLAV-----QKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLG 133
Query: 520 ANFVSV 525
FV +
Sbjct: 134 RKFVRI 139
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLIN--GPEIMSKLAGESES-------NLRKAFE 274
+ L GPPG GKT +A+++A G F I+ G S++ G + + + +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 275 EAEKNAPSIIFIDEIDSIA 293
+A K P + +DEID ++
Sbjct: 171 KAGKLNP-VFLLDEIDKMS 188
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 423 EVLNSMAVTNEHFRTALEMSN--PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480
+++N +T +H T + + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGP----ELLTMWF 535
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 423 EVLNSMAVTNEHFRTALEMSN--PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480
+++N +T +H T + + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGP----ELLTMWF 535
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 497 VLFYGPPGCGKTLLAKAIANE----------CQANFVSVKGPELLTMWFGESEANVREIF 546
+LFYGPPG GKT A+A E + N +G +++ + A+ R+IF
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF-ASTRQIF 107
Query: 547 DKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGAT 606
K + ++ DE D++ L + K T F + A
Sbjct: 108 SKGFK----LIILDEADAMTNAA---------------QNALRRVIERYTKNTRFCVLA- 147
Query: 607 NRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-KSPISPDVDLSALARYTHG 664
N + PALL + + + PLP EA +I + K +SP+ + AL ++G
Sbjct: 148 NYAHKLTPALL--SQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE-KALIELSNG 203
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 224 ILLYGPPGTGKTLIARAVANE 244
+L YGPPGTGKT A+A E
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 59/216 (27%)
Query: 477 QYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE-----CQANFVSVKGPELL 531
++ V+ + + K G P +LF GPPG GKT A A+A E + NF+ + +
Sbjct: 31 EHIVKRLKHYVKTGSMPH--LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-- 86
Query: 532 TMWFGESEANV-REIFDKARQSAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXL 584
E NV RE + ++ P ++F DE D++
Sbjct: 87 -----ERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA--------------- 126
Query: 585 NQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 644
Q L M + FI+ +I+P SR IF
Sbjct: 127 QQALRRTMEMFSSNVRFILSCNYSSKIIEPI------------------QSRCAIF---- 164
Query: 645 RKSPISPDVDLSALARYTHGFSGADITEICQRACKY 680
R P+ D D++ RY G ++TE +A Y
Sbjct: 165 RFRPLR-DEDIAKRLRYIAENEGLELTEEGLQAILY 199
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN---LRKAFEEAEKNA 280
+L GPPG GKT A A+A E F N +L E +R+ +E +
Sbjct: 49 LLFAGPPGVGKTTAALALARE----LFGENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 281 P------SIIFIDEIDSI 292
P IIF+DE D++
Sbjct: 105 PIGGASFKIIFLDEADAL 122
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 211 QLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 270
K +K P + ++G G GK+ V + G +++ E+ S AGE +R
Sbjct: 26 NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR 85
Query: 271 KAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLL--TLMDGLKSRAHV 324
+ + EA K +FI+++D+ A + G + + +Q++ TLM+ + +V
Sbjct: 86 QRYREAAEIIRKGNMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNV 142
Query: 325 VVMGATNR 332
+ G N+
Sbjct: 143 QLPGMYNK 150
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEAEKNA 280
+L GPPGTGKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 281 P------SIIFIDEIDSI 292
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 35/179 (19%)
Query: 497 VLFYGPPGCGKTLLAKAIANE-----CQANFVSVKGPELLTMWFGESEANVREIFDKARQ 551
+LF GPPG GKT A A+A + + NF+ + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 552 SAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGA 605
+AP ++F DE D++ L M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAA---------------LRRTMEMYSKSCRFILSC 139
Query: 606 TNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 664
+I+P R + P+P EA + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 423 EVLNSMAVTNEHFRTALEMSN--PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480
+++N +T +H T + + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 90 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 148
Query: 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGP----ELLTMWF 535
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 149 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 200
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEAEKNA 280
+L GPPGTGKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 281 P------SIIFIDEIDSI 292
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 35/179 (19%)
Query: 497 VLFYGPPGCGKTLLAKAIANE-----CQANFVSVKGPELLTMWFGESEANVREIFDKARQ 551
+LF GPPG GKT A A+A + + NF+ + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 552 SAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMNAKKTVFIIGA 605
+AP ++F DE D++ L M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAA---------------LRRTMEMYSKSCRFILSC 139
Query: 606 TNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 664
+I+P R + P+P EA + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 498 LFYGPPGCGKTLLAKAIANECQANFV--SVKGPELLTM----------WFGESEANVREI 545
+ G PG GKT + + +A V +KG +L + + GE E ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 546 F-DKARQSAPCVLFFDELDSI 565
D A+Q +LF DEL ++
Sbjct: 107 LNDLAKQEGNVILFIDELHTM 127
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 221 PKG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 269
P+G I +YGP +GKT +A AVAN G I+ P+ KL +++S L
Sbjct: 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLV 117
Query: 270 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGE-------VERRIVSQLL 312
+A E A+ A I+ ID + ++ P+ E GE ++ R++SQ L
Sbjct: 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAE-LEGEMGDSHVGLQARLMSQAL 176
Query: 313 TLMDG 317
M G
Sbjct: 177 RKMTG 181
>pdb|3KYF|A Chain A, Crystal Structure Of P4397 Complexed With C-Di-Gmp
Length = 231
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 629 PLPDEAS---RLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN 685
PLP E + R F+A L+ S + D+ L +G + +I CK N
Sbjct: 105 PLPQEVTYHQRRNAFRAALKLSQLV-DIILDGAHLKGNGAMRGKLLDISATGCKLRFEGN 163
Query: 686 IEKDIERERSGKR-KRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQT 744
+E ++ + +R K NP + VD + E+ H+EE R + + A +R + L Q
Sbjct: 164 VEDRLQLGQVYERFKAGNPLGL-VDTMVELRHLHYEE-----RINTTFAGVRFHNLSGQA 217
Query: 745 LQQSRGF 751
++ F
Sbjct: 218 QRKIESF 224
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 423 EVLNSMAVTNEHFRTALEMSN--PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480
+++N +T +H T + + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 115 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 173
Query: 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGP----ELLTMWF 535
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 174 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 225
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258
+L YGPPGTGKT A+ E + GP++M
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531
+LFYGPPG GKT A+ E + GP+L+
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|3LHR|A Chain A, Crystal Structure Of The Scan Domain From Human Znf24
pdb|3LHR|B Chain B, Crystal Structure Of The Scan Domain From Human Znf24
Length = 93
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 160 APDTEIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLR 208
+PD EIF +R + GY D G R+ ++Q+REL L LR
Sbjct: 2 SPDPEIF-----------RQRFRQFGYQDSPGPREAVSQLRELCRLWLR 39
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 219 KPPKGILLYGPPGTGKTLIARAVANETGAFF 249
+P + +++ G G+GKT IA VA+ETG F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|4EZC|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZD|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
Length = 384
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 400 EAALQCIREKMD--VIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNV 457
+AL + K D V L + L++ N F PS L V VPNV
Sbjct: 156 SSALNSVLSKWDLPVFTLPFNMALSMYLSATGHYNPFF--------PSTLITPVTSVPNV 207
Query: 458 SWEDIGGLETVK 469
+W D+ L+ +K
Sbjct: 208 TWPDLSALQLLK 219
>pdb|3SOI|A Chain A, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
pdb|3SOI|B Chain B, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
Length = 258
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 423 EVLNSMAVTNEHFRTALEMSN--PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480
+++N +T +H T + + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 70 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 128
Query: 481 EHPEKFE 487
+PE+FE
Sbjct: 129 TNPERFE 135
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 498 LFYGPPGCGKTLLAKAIANECQANFV--SVKGPELLTM----------WFGESEANVREI 545
+ G PG GKT + + +A V +KG ++++ + GE E ++ +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 546 FDKARQS-APCVLFFDELDSI 565
+ QS +LF DEL ++
Sbjct: 118 IQEVVQSQGEVILFIDELHTV 138
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 225 LLYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKA 272
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 273 FEE-AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331
+E + I+FIDE+ ++ K G V+ ++ +R + ++GAT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVD------AGNMLKPALARGELRLIGATT 170
Query: 332 ----RPNSIDPAL-RRF 343
R DPAL RRF
Sbjct: 171 LDEYREIEKDPALERRF 187
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 225 LLYGPPGTGKTLIARAVANET--GAFFFLINGPEIMS----------KLAGESESNLRKA 272
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 273 FEE-AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331
+E + I+FIDE+ ++ K G V+ ++ +R + ++GAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAG------NMLKPALARGELRLIGATT 307
Query: 332 ----RPNSIDPAL-RRF 343
R DPAL RRF
Sbjct: 308 LDEYREIEKDPALERRF 324
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 498 LFYGPPGCGKTLLAKAIANECQANFV--SVKGPELLTM----------WFGESEANVREI 545
+ G PG GKT + + +A V +KG ++++ + GE E ++ +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 546 FDKARQS-APCVLFFDELDSI 565
+ QS +LF DEL ++
Sbjct: 255 IQEVVQSQGEVILFIDELHTV 275
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 39/145 (26%)
Query: 204 ELPLRHPQLFKSIGV-------KPPKGILLYGPPGTGKTLIARAVANETGAFFF------ 250
ELP R Q+ K + + P I +YG GTGKT + + V ++ F
Sbjct: 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80
Query: 251 ----------------LINGPEIMSKLAGESESNLRKAFEEAEKNAPS--IIFIDEIDS- 291
L+ ++ G S + L + +A ++ S +I +DEID+
Sbjct: 81 YINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140
Query: 292 -------IAPKREKTNGEVERRIVS 309
I K + N EV + +S
Sbjct: 141 VKKYNDDILYKLSRINSEVNKSKIS 165
>pdb|3FAJ|A Chain A, Structure Of The Structural Protein P131 Of The Archaeal
Virus Acidianus Two-Tailed Virus (Atv)
Length = 151
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 255 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301
PE+ KLAGE E+N R+A +E K A I D++ P R K +G
Sbjct: 50 PEVTLKLAGE-EANARRAGDERTKEAIHAIVKMISDAMKPYRNKGSG 95
>pdb|2GJG|A Chain A, Crystal Structure Of A Pilz-Containing Protein (Pp4397)
From Pseudomonas Putida Kt2440 At 2.25 A Resolution
Length = 248
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 629 PLPDEAS---RLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN 685
PLP E + R F+A L+ S + D+ L +G + +I CK N
Sbjct: 113 PLPQEVTYHQRRNAFRAALKLSQLV-DIILDGAHLKGNGAXRGKLLDISATGCKLRFEGN 171
Query: 686 IEKDIERERSGKR-KRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADI-----RKYQ 739
+E ++ + +R K NP + VD E+ H+EE + V ++ RK +
Sbjct: 172 VEDRLQLGQVYERFKAGNPLGL-VDTXVELRHLHYEERINTTFAGVRFHNLSGQAQRKIE 230
Query: 740 LFAQTLQ-QSRGFGSD 754
F LQ ++R F D
Sbjct: 231 SFVYQLQREARRFDKD 246
>pdb|2BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|2BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|4BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
pdb|4BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
Length = 265
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 423 EVLNSMAVTNEHFRTALEMSN--PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480
+++N +T +H T + + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 481 EHPEKFE 487
+PE+FE
Sbjct: 132 TNPERFE 138
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 229 PPGTGKTLIARAVANETGAF-FFLINGPEIM 258
PPGT + L+ARAVA E G F + + PE +
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 353 GVPDEVGRLEVFRIHTKNMK-LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMD 411
G PD R +F I+ + + D + T GY G+D+A + +A +Q IR+
Sbjct: 1 GSPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 60
Query: 412 VIDLEDETIDAEVLNSMAVTNEHFRTALEMS 442
+D + + + + + A+EMS
Sbjct: 61 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMS 91
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 631 PDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEICQRACKYAIRE 684
PD A+R +F+ + +P + D L T G+SG+DI + + A IR+
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 219 KPPKGILLYGPPGTGKTLIARAVANETG 246
K KG+ L+G G GKT + A+ANE
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANELA 79
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 448 RETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGK 507
R V +V + D+ L T++R L++ + +S +K VL G PGCGK
Sbjct: 127 RRVAVSSESVVYSDMAKLRTLRRLLKDGEPH------------VSSAKVVLVDGVPGCGK 174
Query: 508 T 508
T
Sbjct: 175 T 175
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN--AP 281
++ GPPG GK A+ +A E G F I+ +I+ + + +KA E E+ P
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 282 SIIFIDEIDSIAPK 295
+ I I+ + PK
Sbjct: 61 DDLIIALIEEVFPK 74
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 48/188 (25%)
Query: 201 ELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIM 258
+++E+ P++ KS K P +L+ G GTGK ++AR + +G F +N I
Sbjct: 137 KILEIKRLIPKIAKS---KAP--VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIP 191
Query: 259 SKLAGESE--SNLRKAFEEA--------EKNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308
+LA ESE + + AF A E +F+DE+ GE+++R+
Sbjct: 192 QELA-ESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV-----------GELDQRVQ 239
Query: 309 SQLLTLMD---------GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359
++LL +++ K + V+ ATN+ +++ +++ G F RE D
Sbjct: 240 AKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLEEEIKK-GNF-RE------DLYY 289
Query: 360 RLEVFRIH 367
RL VF+I+
Sbjct: 290 RLSVFQIY 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,019,924
Number of Sequences: 62578
Number of extensions: 923415
Number of successful extensions: 3293
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2962
Number of HSP's gapped (non-prelim): 254
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)