Query 042193
Match_columns 784
No_of_seqs 674 out of 5067
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 9E-116 2E-120 948.2 49.8 679 4-744 13-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 7E-112 1E-116 901.8 48.9 555 182-750 185-793 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-98 7E-103 887.8 73.2 723 7-747 2-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 5.8E-85 1.3E-89 712.2 52.4 615 112-746 304-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 5.5E-71 1.2E-75 596.8 55.3 498 220-749 430-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 2.7E-65 5.9E-70 583.3 42.2 489 205-741 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 1.3E-59 2.7E-64 493.7 38.1 603 8-641 10-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-58 6E-63 467.6 23.6 252 451-727 142-393 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 7E-54 1.5E-58 437.0 21.1 285 450-747 202-490 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 5.5E-50 1.2E-54 407.1 25.6 246 180-442 144-392 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 3.8E-49 8.2E-54 388.6 17.0 294 450-749 123-439 (439)
12 KOG0727 26S proteasome regulat 100.0 2.2E-47 4.8E-52 367.9 19.1 249 453-726 148-396 (408)
13 KOG0728 26S proteasome regulat 100.0 3E-47 6.5E-52 366.6 19.5 260 452-736 139-398 (404)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-46 8.8E-51 398.5 23.9 267 180-447 504-774 (802)
15 KOG0734 AAA+-type ATPase conta 100.0 1.4E-46 3.1E-51 395.8 17.6 244 454-726 298-541 (752)
16 KOG0730 AAA+-type ATPase [Post 100.0 7.5E-46 1.6E-50 403.4 23.4 251 181-446 428-678 (693)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 5.2E-44 1.1E-48 397.3 37.2 398 280-744 81-483 (489)
18 KOG0652 26S proteasome regulat 100.0 1.3E-45 2.9E-50 357.1 16.9 250 453-727 164-413 (424)
19 KOG0729 26S proteasome regulat 100.0 3.4E-45 7.5E-50 355.3 17.0 258 444-726 161-418 (435)
20 KOG0726 26S proteasome regulat 100.0 1.7E-45 3.7E-50 361.7 14.9 249 453-726 178-426 (440)
21 KOG0737 AAA+-type ATPase [Post 100.0 4.6E-43 9.9E-48 359.3 19.9 288 455-747 87-382 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 9.3E-43 2E-47 391.4 21.3 249 454-728 305-555 (774)
23 KOG0736 Peroxisome assembly fa 100.0 2.5E-42 5.4E-47 378.4 22.8 269 179-448 664-938 (953)
24 PTZ00454 26S protease regulato 100.0 2.7E-42 5.8E-47 376.4 22.7 253 452-729 137-389 (398)
25 COG1223 Predicted ATPase (AAA+ 100.0 6.8E-42 1.5E-46 331.8 15.5 245 453-730 114-359 (368)
26 COG0465 HflB ATP-dependent Zn 100.0 2.5E-41 5.5E-46 374.6 18.3 247 454-726 144-390 (596)
27 PRK03992 proteasome-activating 100.0 1.7E-40 3.8E-45 364.8 22.4 258 451-733 122-379 (389)
28 PTZ00361 26 proteosome regulat 100.0 7.3E-40 1.6E-44 358.8 20.4 249 453-726 176-424 (438)
29 KOG0727 26S proteasome regulat 100.0 3E-39 6.5E-44 311.7 20.2 244 181-441 149-395 (408)
30 COG1223 Predicted ATPase (AAA+ 100.0 1.7E-38 3.6E-43 308.2 24.6 302 111-441 50-354 (368)
31 KOG0728 26S proteasome regulat 100.0 3.2E-39 6.9E-44 311.2 19.1 245 179-441 139-387 (404)
32 KOG0740 AAA+-type ATPase [Post 100.0 9E-40 2E-44 348.3 16.0 281 450-748 143-426 (428)
33 KOG0726 26S proteasome regulat 100.0 9.9E-40 2.1E-44 321.1 14.9 246 180-442 178-426 (440)
34 KOG0652 26S proteasome regulat 100.0 9.2E-39 2E-43 309.7 21.1 259 152-410 131-397 (424)
35 KOG0738 AAA+-type ATPase [Post 100.0 1.2E-38 2.6E-43 325.7 22.1 263 181-447 206-474 (491)
36 KOG0734 AAA+-type ATPase conta 100.0 7.1E-39 1.5E-43 337.8 20.7 228 180-408 297-524 (752)
37 KOG0732 AAA+-type ATPase conta 100.0 1.9E-38 4.2E-43 364.9 22.3 444 182-644 260-726 (1080)
38 KOG0741 AAA+-type ATPase [Post 100.0 3.7E-39 8E-44 339.6 14.7 277 453-740 212-506 (744)
39 KOG0651 26S proteasome regulat 100.0 6.7E-39 1.5E-43 318.9 13.1 247 455-726 127-373 (388)
40 KOG0735 AAA+-type ATPase [Post 100.0 9.6E-38 2.1E-42 339.1 22.9 229 183-411 663-891 (952)
41 KOG0729 26S proteasome regulat 100.0 5.9E-38 1.3E-42 304.9 17.4 230 180-410 170-403 (435)
42 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-37 3.1E-42 353.7 22.8 250 452-727 47-296 (495)
43 TIGR01242 26Sp45 26S proteasom 100.0 7.7E-37 1.7E-41 335.1 22.1 250 452-726 114-363 (364)
44 TIGR03689 pup_AAA proteasome A 100.0 8.7E-37 1.9E-41 338.5 21.4 251 452-725 174-477 (512)
45 CHL00176 ftsH cell division pr 100.0 4.4E-36 9.5E-41 344.1 22.1 247 454-726 177-423 (638)
46 PTZ00454 26S protease regulato 100.0 2.2E-35 4.8E-40 322.1 25.5 246 180-442 138-386 (398)
47 KOG0739 AAA+-type ATPase [Post 100.0 6.2E-36 1.3E-40 295.3 16.1 228 181-411 127-356 (439)
48 KOG0737 AAA+-type ATPase [Post 100.0 2.9E-35 6.4E-40 302.0 19.5 228 182-411 87-317 (386)
49 KOG0731 AAA+-type ATPase conta 100.0 3.6E-35 7.9E-40 330.3 21.9 229 182-411 306-539 (774)
50 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.6E-35 1.9E-39 347.0 22.2 227 479-739 1615-1897(2281)
51 PRK10733 hflB ATP-dependent me 100.0 1.6E-34 3.5E-39 335.8 22.0 248 455-728 147-394 (644)
52 TIGR01243 CDC48 AAA family ATP 100.0 5.9E-34 1.3E-38 338.6 26.2 266 182-447 448-715 (733)
53 KOG0732 AAA+-type ATPase conta 100.0 4.3E-35 9.4E-40 337.4 15.5 267 454-732 259-531 (1080)
54 PRK03992 proteasome-activating 100.0 1.4E-33 3.1E-38 310.0 24.8 250 181-447 125-377 (389)
55 PTZ00361 26 proteosome regulat 100.0 9.6E-34 2.1E-38 310.6 23.1 246 180-442 176-424 (438)
56 COG0464 SpoVK ATPases of the A 100.0 1.6E-33 3.5E-38 321.8 25.2 249 181-445 236-486 (494)
57 TIGR02639 ClpA ATP-dependent C 100.0 4E-32 8.7E-37 321.7 31.6 440 181-686 176-716 (731)
58 COG0465 HflB ATP-dependent Zn 100.0 5E-33 1.1E-37 308.7 20.3 231 181-412 144-377 (596)
59 PLN00020 ribulose bisphosphate 100.0 1.4E-32 3E-37 285.4 22.1 218 459-684 114-354 (413)
60 PRK11034 clpA ATP-dependent Cl 100.0 4E-31 8.7E-36 308.2 32.7 448 184-686 183-720 (758)
61 CHL00195 ycf46 Ycf46; Provisio 100.0 3.7E-31 8E-36 294.6 25.5 242 182-446 223-467 (489)
62 KOG0651 26S proteasome regulat 100.0 2E-32 4.4E-37 272.8 12.8 230 179-408 124-356 (388)
63 TIGR01242 26Sp45 26S proteasom 100.0 8.4E-31 1.8E-35 287.4 24.5 245 180-441 115-362 (364)
64 TIGR01241 FtsH_fam ATP-depende 100.0 6.2E-31 1.3E-35 299.4 23.4 244 181-442 49-295 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 1.7E-30 3.7E-35 288.3 22.5 221 180-406 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 9.3E-30 2E-34 292.0 22.8 243 182-442 178-423 (638)
67 KOG0740 AAA+-type ATPase [Post 100.0 5.2E-29 1.1E-33 266.0 17.6 261 180-447 146-409 (428)
68 PLN00020 ribulose bisphosphate 100.0 3.4E-28 7.3E-33 252.8 21.4 188 216-406 143-352 (413)
69 CHL00095 clpC Clp protease ATP 100.0 2.8E-27 6.1E-32 283.5 31.3 453 184-686 176-786 (821)
70 PRK10733 hflB ATP-dependent me 100.0 5.3E-28 1.2E-32 281.3 23.8 242 184-443 149-393 (644)
71 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.2E-28 6.9E-33 291.3 20.4 198 208-411 1617-1863(2281)
72 TIGR03345 VI_ClpV1 type VI sec 100.0 2E-26 4.3E-31 274.3 35.4 449 181-686 181-835 (852)
73 TIGR03346 chaperone_ClpB ATP-d 100.0 1.6E-26 3.5E-31 277.7 34.7 459 181-686 167-830 (852)
74 PRK10865 protein disaggregatio 100.0 2.1E-26 4.5E-31 275.2 32.9 452 181-686 172-833 (857)
75 COG0542 clpA ATP-binding subun 99.9 1.4E-25 3E-30 255.4 30.2 454 183-685 166-758 (786)
76 KOG0744 AAA+-type ATPase [Post 99.9 5.5E-22 1.2E-26 199.3 9.5 186 459-646 141-342 (423)
77 KOG0743 AAA+-type ATPase [Post 99.9 4.5E-21 9.9E-26 203.2 15.6 221 457-687 198-429 (457)
78 CHL00181 cbbX CbbX; Provisiona 99.9 6.9E-21 1.5E-25 200.4 16.3 214 459-685 22-258 (287)
79 PF00004 AAA: ATPase family as 99.8 7.1E-21 1.5E-25 177.8 12.3 130 497-630 1-132 (132)
80 TIGR02881 spore_V_K stage V sp 99.8 2.3E-20 5E-25 195.3 15.6 213 459-685 5-242 (261)
81 KOG0742 AAA+-type ATPase [Post 99.8 2.4E-20 5.3E-25 192.2 14.5 180 491-677 381-588 (630)
82 TIGR02880 cbbX_cfxQ probable R 99.8 2.3E-20 5.1E-25 196.6 14.3 211 461-684 23-256 (284)
83 PF00004 AAA: ATPase family as 99.8 4.7E-19 1E-23 165.5 15.5 130 224-354 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 2.5E-17 5.3E-22 173.5 21.1 211 187-408 23-257 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.8 2.4E-17 5.2E-22 173.8 18.5 210 188-408 23-256 (284)
86 TIGR02881 spore_V_K stage V sp 99.7 8.6E-17 1.9E-21 168.4 19.4 176 186-372 5-195 (261)
87 PF05496 RuvB_N: Holliday junc 99.7 2.2E-17 4.8E-22 162.1 13.5 188 456-676 20-224 (233)
88 KOG0743 AAA+-type ATPase [Post 99.7 2E-16 4.4E-21 168.2 16.0 202 185-396 199-411 (457)
89 KOG0742 AAA+-type ATPase [Post 99.7 2.8E-16 6E-21 162.6 15.9 176 220-400 383-587 (630)
90 PRK00080 ruvB Holliday junctio 99.7 8E-16 1.7E-20 166.6 20.5 232 457-746 22-273 (328)
91 KOG0744 AAA+-type ATPase [Post 99.7 6E-17 1.3E-21 163.3 10.4 149 219-369 175-341 (423)
92 TIGR00763 lon ATP-dependent pr 99.7 1.8E-16 3.9E-21 189.5 15.6 203 460-683 320-556 (775)
93 TIGR00635 ruvB Holliday juncti 99.7 1.2E-15 2.6E-20 164.1 20.5 230 458-745 2-251 (305)
94 TIGR02639 ClpA ATP-dependent C 99.7 3.2E-16 7E-21 186.4 17.2 242 458-745 180-452 (731)
95 COG2255 RuvB Holliday junction 99.7 1.5E-15 3.3E-20 151.5 18.2 232 456-745 22-273 (332)
96 PF05496 RuvB_N: Holliday junc 99.7 4.4E-15 9.6E-20 146.0 17.5 183 179-390 16-215 (233)
97 PRK11034 clpA ATP-dependent Cl 99.6 1.6E-15 3.4E-20 178.0 15.9 176 493-680 206-408 (758)
98 COG2256 MGS1 ATPase related to 99.6 8.1E-15 1.8E-19 153.3 17.3 171 457-665 21-205 (436)
99 PRK07003 DNA polymerase III su 99.6 1.9E-14 4.1E-19 163.5 16.5 186 456-679 12-226 (830)
100 KOG1051 Chaperone HSP104 and r 99.6 1.4E-13 3E-18 159.9 23.7 161 187-370 186-365 (898)
101 KOG2004 Mitochondrial ATP-depe 99.6 8E-15 1.7E-19 161.8 12.5 164 460-644 411-596 (906)
102 TIGR00763 lon ATP-dependent pr 99.6 4.9E-14 1.1E-18 168.7 19.3 164 187-368 320-505 (775)
103 PRK12323 DNA polymerase III su 99.6 4.6E-14 1E-18 158.6 16.9 185 456-678 12-230 (700)
104 COG0466 Lon ATP-dependent Lon 99.6 3.8E-14 8.2E-19 157.7 15.9 162 460-644 323-508 (782)
105 PRK14956 DNA polymerase III su 99.6 3.6E-14 7.8E-19 156.0 15.6 185 456-678 14-227 (484)
106 PRK05342 clpX ATP-dependent pr 99.6 5.9E-14 1.3E-18 154.2 17.1 222 462-685 73-382 (412)
107 PRK00149 dnaA chromosomal repl 99.6 3.2E-14 6.9E-19 160.7 15.2 173 494-682 148-331 (450)
108 TIGR00362 DnaA chromosomal rep 99.6 4.6E-14 9.9E-19 157.5 16.0 173 494-683 136-320 (405)
109 COG2255 RuvB Holliday junction 99.6 5.6E-14 1.2E-18 140.3 14.3 182 180-390 19-217 (332)
110 PRK00080 ruvB Holliday junctio 99.5 4.7E-13 1E-17 145.0 20.9 192 180-401 18-226 (328)
111 PRK14962 DNA polymerase III su 99.5 4.4E-13 9.5E-18 150.2 20.0 183 456-676 10-221 (472)
112 TIGR02902 spore_lonB ATP-depen 99.5 1.7E-13 3.7E-18 156.7 16.4 210 456-725 61-331 (531)
113 TIGR00635 ruvB Holliday juncti 99.5 6.9E-13 1.5E-17 142.6 20.3 187 185-401 2-205 (305)
114 PRK10865 protein disaggregatio 99.5 9.1E-14 2E-18 167.0 14.4 164 458-647 176-357 (857)
115 PRK13342 recombination factor 99.5 3.8E-13 8.2E-18 150.1 18.4 180 457-678 9-201 (413)
116 PRK14949 DNA polymerase III su 99.5 5.2E-13 1.1E-17 154.9 19.4 185 456-678 12-225 (944)
117 PRK12422 chromosomal replicati 99.5 2.9E-13 6.3E-18 150.9 16.9 211 494-746 141-366 (445)
118 TIGR03345 VI_ClpV1 type VI sec 99.5 7.4E-14 1.6E-18 167.2 12.9 183 458-666 185-390 (852)
119 PRK14088 dnaA chromosomal repl 99.5 1.8E-13 3.9E-18 153.0 14.9 173 494-682 130-314 (440)
120 TIGR00382 clpX endopeptidase C 99.5 3E-13 6.6E-18 147.7 16.1 223 461-685 78-388 (413)
121 COG2256 MGS1 ATPase related to 99.5 4.2E-13 9.1E-18 140.6 16.3 174 179-390 16-206 (436)
122 TIGR02928 orc1/cdc6 family rep 99.5 4.4E-13 9.6E-18 148.0 17.7 202 460-684 15-257 (365)
123 PRK14960 DNA polymerase III su 99.5 5E-13 1.1E-17 150.7 18.1 185 456-678 11-224 (702)
124 PRK10787 DNA-binding ATP-depen 99.5 2.6E-13 5.6E-18 160.8 16.6 204 460-685 322-559 (784)
125 PRK07940 DNA polymerase III su 99.5 2.1E-13 4.6E-18 149.2 14.6 185 458-673 3-214 (394)
126 PRK14086 dnaA chromosomal repl 99.5 3.7E-13 8E-18 152.0 16.6 172 495-682 315-497 (617)
127 PRK06893 DNA replication initi 99.5 4.8E-13 1E-17 137.1 14.6 160 495-677 40-207 (229)
128 KOG2004 Mitochondrial ATP-depe 99.5 4.1E-13 8.9E-18 148.5 14.8 164 187-368 411-596 (906)
129 PRK00411 cdc6 cell division co 99.5 7E-13 1.5E-17 148.0 16.7 178 494-684 55-265 (394)
130 PRK07994 DNA polymerase III su 99.5 1.9E-12 4.1E-17 148.4 20.3 185 456-678 12-225 (647)
131 TIGR03346 chaperone_ClpB ATP-d 99.5 3E-13 6.5E-18 163.4 14.4 182 458-665 171-375 (852)
132 CHL00095 clpC Clp protease ATP 99.5 1.7E-13 3.7E-18 165.0 11.6 185 457-667 176-382 (821)
133 PTZ00112 origin recognition co 99.5 1.2E-12 2.5E-17 149.3 17.0 168 496-679 783-987 (1164)
134 PRK14961 DNA polymerase III su 99.5 1.7E-12 3.8E-17 142.2 18.1 185 456-678 12-225 (363)
135 PRK04195 replication factor C 99.5 7.4E-13 1.6E-17 150.7 15.7 189 456-679 10-205 (482)
136 PRK14958 DNA polymerase III su 99.5 5.8E-13 1.3E-17 150.8 14.4 185 456-678 12-225 (509)
137 PRK08691 DNA polymerase III su 99.4 1.2E-12 2.5E-17 149.2 15.9 187 456-680 12-227 (709)
138 PRK06645 DNA polymerase III su 99.4 2.6E-12 5.6E-17 144.5 18.5 189 455-681 16-237 (507)
139 TIGR00390 hslU ATP-dependent p 99.4 1.2E-12 2.7E-17 140.5 14.7 176 461-640 13-342 (441)
140 PF02359 CDC48_N: Cell divisio 99.4 6E-13 1.3E-17 113.9 9.4 80 8-89 1-85 (87)
141 PRK14087 dnaA chromosomal repl 99.4 1.3E-12 2.9E-17 146.2 14.5 173 494-683 141-329 (450)
142 PRK07764 DNA polymerase III su 99.4 1.3E-12 2.8E-17 154.7 14.9 185 456-678 11-226 (824)
143 PRK14959 DNA polymerase III su 99.4 3.8E-12 8.3E-17 144.6 18.2 183 456-676 12-223 (624)
144 PRK14964 DNA polymerase III su 99.4 4.5E-12 9.8E-17 141.3 17.5 187 456-680 9-224 (491)
145 PRK05563 DNA polymerase III su 99.4 9.3E-12 2E-16 143.0 20.3 186 456-679 12-226 (559)
146 PRK14952 DNA polymerase III su 99.4 2.1E-12 4.6E-17 147.3 14.9 186 456-679 9-225 (584)
147 COG0466 Lon ATP-dependent Lon 99.4 1.7E-12 3.7E-17 144.7 13.4 164 187-368 323-508 (782)
148 PRK08084 DNA replication initi 99.4 3.8E-12 8.2E-17 130.9 15.1 159 495-678 46-214 (235)
149 PRK14963 DNA polymerase III su 99.4 8.9E-12 1.9E-16 140.8 18.7 185 456-678 10-222 (504)
150 COG0593 DnaA ATPase involved i 99.4 4.4E-12 9.5E-17 136.8 15.2 176 493-685 112-298 (408)
151 PRK14951 DNA polymerase III su 99.4 6.9E-12 1.5E-16 143.6 17.6 186 456-679 12-231 (618)
152 KOG0989 Replication factor C, 99.4 2.2E-11 4.7E-16 123.3 18.6 189 455-679 31-236 (346)
153 PRK14969 DNA polymerase III su 99.4 8E-12 1.7E-16 142.5 17.7 186 456-679 12-226 (527)
154 PRK12402 replication factor C 99.4 8.9E-12 1.9E-16 136.1 17.0 186 456-677 11-227 (337)
155 TIGR03420 DnaA_homol_Hda DnaA 99.4 5.1E-12 1.1E-16 129.7 14.1 166 493-683 37-211 (226)
156 PRK13341 recombination factor 99.4 4.5E-12 9.7E-17 148.4 14.9 181 457-679 25-223 (725)
157 PRK08727 hypothetical protein; 99.4 8.5E-12 1.8E-16 128.1 15.3 159 495-678 42-209 (233)
158 PRK05201 hslU ATP-dependent pr 99.4 4E-12 8.8E-17 136.7 13.2 177 461-641 16-345 (443)
159 PRK05642 DNA replication initi 99.4 1.3E-11 2.8E-16 126.8 16.4 163 494-681 45-216 (234)
160 PRK05896 DNA polymerase III su 99.4 1.7E-11 3.6E-16 138.7 18.4 185 456-678 12-225 (605)
161 COG1474 CDC6 Cdc6-related prot 99.4 1.6E-11 3.4E-16 133.2 17.6 175 494-685 42-249 (366)
162 PLN03025 replication factor C 99.4 2.9E-11 6.4E-16 130.5 19.6 181 456-675 9-202 (319)
163 PRK14956 DNA polymerase III su 99.4 3.6E-11 7.9E-16 132.5 20.3 185 179-398 10-223 (484)
164 KOG2028 ATPase related to the 99.4 9.4E-12 2E-16 127.8 14.2 207 495-751 163-393 (554)
165 PRK08903 DnaA regulatory inact 99.4 1.4E-11 3.1E-16 126.4 15.9 175 493-724 41-224 (227)
166 PRK07133 DNA polymerase III su 99.3 2.5E-11 5.3E-16 140.0 19.0 192 455-678 13-224 (725)
167 PF05673 DUF815: Protein of un 99.3 1.4E-11 3.1E-16 123.1 14.7 190 453-675 20-243 (249)
168 PRK04195 replication factor C 99.3 1.6E-11 3.4E-16 139.9 17.1 182 179-389 6-195 (482)
169 PRK14957 DNA polymerase III su 99.3 3.2E-11 6.8E-16 136.5 19.0 186 456-679 12-226 (546)
170 PRK06305 DNA polymerase III su 99.3 2.8E-11 6E-16 135.7 18.4 183 456-676 13-225 (451)
171 PRK14962 DNA polymerase III su 99.3 4.1E-11 8.9E-16 134.4 19.7 176 179-389 6-211 (472)
172 TIGR02397 dnaX_nterm DNA polym 99.3 3.8E-11 8.1E-16 132.1 18.9 187 455-679 9-224 (355)
173 PRK12323 DNA polymerase III su 99.3 2.7E-11 5.8E-16 136.6 17.7 187 179-400 8-228 (700)
174 PRK14965 DNA polymerase III su 99.3 1.1E-11 2.3E-16 143.1 15.1 185 456-678 12-225 (576)
175 PRK07003 DNA polymerase III su 99.3 4.4E-11 9.6E-16 136.4 19.6 187 179-400 8-223 (830)
176 PHA02544 44 clamp loader, smal 99.3 1.4E-11 3E-16 133.2 14.7 154 457-643 18-172 (316)
177 TIGR02903 spore_lon_C ATP-depe 99.3 8.9E-11 1.9E-15 136.5 22.1 223 456-727 150-431 (615)
178 PF00308 Bac_DnaA: Bacterial d 99.3 6E-12 1.3E-16 127.7 10.7 169 495-680 35-215 (219)
179 PRK14953 DNA polymerase III su 99.3 3.4E-11 7.4E-16 135.7 17.7 186 456-679 12-226 (486)
180 PRK07940 DNA polymerase III su 99.3 5.6E-11 1.2E-15 130.3 18.8 185 185-397 3-214 (394)
181 TIGR02640 gas_vesic_GvpN gas v 99.3 1.6E-11 3.5E-16 128.4 13.9 132 494-644 21-198 (262)
182 PRK13342 recombination factor 99.3 7.5E-11 1.6E-15 131.8 19.0 172 179-389 4-189 (413)
183 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-10 3.1E-15 128.1 20.8 201 187-407 15-256 (365)
184 PRK06620 hypothetical protein; 99.3 2.2E-11 4.9E-16 122.9 12.9 144 495-677 45-193 (214)
185 PRK06647 DNA polymerase III su 99.3 6.3E-11 1.4E-15 135.6 17.6 186 455-678 11-225 (563)
186 PRK14970 DNA polymerase III su 99.3 8.7E-11 1.9E-15 129.6 18.1 192 455-678 12-214 (367)
187 PRK00411 cdc6 cell division co 99.3 2.4E-10 5.2E-15 127.6 21.4 220 187-442 30-282 (394)
188 PRK14961 DNA polymerase III su 99.3 1.5E-10 3.3E-15 127.0 19.3 193 179-400 8-223 (363)
189 PRK08451 DNA polymerase III su 99.3 9E-11 1.9E-15 132.1 17.8 188 456-681 10-226 (535)
190 PRK10787 DNA-binding ATP-depen 99.3 9E-11 2E-15 139.3 18.4 163 187-368 322-506 (784)
191 PF05621 TniB: Bacterial TniB 99.3 7.8E-11 1.7E-15 121.6 15.3 228 456-734 33-296 (302)
192 PRK14949 DNA polymerase III su 99.3 2.3E-10 5.1E-15 133.1 20.9 192 179-399 8-222 (944)
193 PRK14955 DNA polymerase III su 99.3 5.8E-11 1.3E-15 131.7 15.2 187 456-680 12-235 (397)
194 PLN03025 replication factor C 99.3 1.8E-10 4E-15 124.3 18.6 174 179-388 5-192 (319)
195 COG1224 TIP49 DNA helicase TIP 99.3 1.8E-10 3.8E-15 118.6 17.2 141 554-739 292-446 (450)
196 PRK14960 DNA polymerase III su 99.3 2.3E-10 5E-15 129.5 19.7 188 179-401 7-223 (702)
197 PRK00149 dnaA chromosomal repl 99.3 1.3E-10 2.8E-15 131.4 17.5 165 221-399 148-324 (450)
198 TIGR02902 spore_lonB ATP-depen 99.3 1.3E-10 2.7E-15 133.2 17.5 200 179-407 57-314 (531)
199 PRK07994 DNA polymerase III su 99.2 3.3E-10 7.2E-15 130.2 20.6 187 179-400 8-223 (647)
200 PRK05342 clpX ATP-dependent pr 99.2 3.4E-10 7.3E-15 124.7 19.7 216 189-406 73-379 (412)
201 PF05673 DUF815: Protein of un 99.2 5.7E-10 1.2E-14 111.7 19.2 167 180-374 20-213 (249)
202 PRK06645 DNA polymerase III su 99.2 4.7E-10 1E-14 126.4 20.4 195 179-402 13-234 (507)
203 TIGR03420 DnaA_homol_Hda DnaA 99.2 6.1E-10 1.3E-14 114.3 19.6 180 190-403 20-207 (226)
204 TIGR00390 hslU ATP-dependent p 99.2 6.2E-11 1.3E-15 127.5 12.4 176 188-365 13-343 (441)
205 PHA02544 44 clamp loader, smal 99.2 1.9E-10 4.1E-15 124.4 16.5 159 179-367 13-172 (316)
206 PRK09111 DNA polymerase III su 99.2 2.5E-10 5.5E-15 131.2 18.1 191 456-678 20-238 (598)
207 TIGR00362 DnaA chromosomal rep 99.2 2.3E-10 5E-15 127.8 17.3 168 221-401 136-314 (405)
208 KOG2028 ATPase related to the 99.2 4E-10 8.7E-15 116.0 17.0 189 179-405 130-345 (554)
209 PRK14948 DNA polymerase III su 99.2 4.2E-10 9.1E-15 130.3 19.5 183 456-676 12-225 (620)
210 PRK14958 DNA polymerase III su 99.2 3.4E-10 7.4E-15 128.4 18.4 188 179-401 8-224 (509)
211 PTZ00112 origin recognition co 99.2 4.2E-10 9.1E-15 128.8 18.9 181 187-387 755-969 (1164)
212 TIGR01650 PD_CobS cobaltochela 99.2 4.7E-11 1E-15 125.6 10.5 140 490-646 60-235 (327)
213 PRK14954 DNA polymerase III su 99.2 5E-10 1.1E-14 128.9 19.4 187 456-680 12-235 (620)
214 PRK09087 hypothetical protein; 99.2 1.2E-10 2.5E-15 118.8 12.6 172 495-726 45-222 (226)
215 PRK14964 DNA polymerase III su 99.2 7.4E-10 1.6E-14 123.7 19.4 189 179-402 5-222 (491)
216 COG2812 DnaX DNA polymerase II 99.2 7.2E-11 1.6E-15 131.2 11.1 194 456-681 12-228 (515)
217 PRK05201 hslU ATP-dependent pr 99.2 9.4E-11 2E-15 126.2 11.4 176 188-365 16-345 (443)
218 PRK12402 replication factor C 99.2 1.4E-09 3E-14 118.8 20.9 181 179-388 7-218 (337)
219 PRK08691 DNA polymerase III su 99.2 6.8E-10 1.5E-14 126.9 18.6 189 179-402 8-225 (709)
220 PRK00440 rfc replication facto 99.2 3.4E-10 7.4E-15 122.5 15.6 183 457-678 14-208 (319)
221 KOG0989 Replication factor C, 99.2 5.7E-10 1.2E-14 113.2 15.7 180 179-390 28-224 (346)
222 PRK13407 bchI magnesium chelat 99.2 1.7E-10 3.6E-15 123.4 12.7 160 456-644 4-216 (334)
223 PRK14950 DNA polymerase III su 99.2 5.4E-10 1.2E-14 129.8 17.9 185 456-678 12-226 (585)
224 PF00308 Bac_DnaA: Bacterial d 99.2 2.1E-09 4.6E-14 109.1 20.0 166 222-399 35-210 (219)
225 PRK14959 DNA polymerase III su 99.2 7.6E-10 1.7E-14 126.0 18.5 179 179-391 8-215 (624)
226 PRK14088 dnaA chromosomal repl 99.2 4.5E-10 9.8E-15 125.8 16.4 164 222-399 131-307 (440)
227 PRK14963 DNA polymerase III su 99.2 1.3E-09 2.8E-14 123.4 20.1 178 179-390 6-211 (504)
228 cd00009 AAA The AAA+ (ATPases 99.2 2.6E-10 5.6E-15 107.8 12.2 122 493-630 18-151 (151)
229 PRK06893 DNA replication initi 99.2 1.2E-09 2.5E-14 112.1 17.7 148 222-389 40-196 (229)
230 PRK08084 DNA replication initi 99.2 3.3E-09 7.2E-14 109.1 20.7 164 191-389 28-202 (235)
231 PRK14952 DNA polymerase III su 99.2 1.7E-09 3.7E-14 123.7 20.3 187 179-400 5-222 (584)
232 PRK07764 DNA polymerase III su 99.2 1.4E-09 2.9E-14 129.2 20.1 186 179-399 7-223 (824)
233 PRK05896 DNA polymerase III su 99.1 1.2E-09 2.6E-14 123.8 18.5 177 179-389 8-213 (605)
234 cd00009 AAA The AAA+ (ATPases 99.1 1.2E-09 2.5E-14 103.2 15.7 121 220-353 18-150 (151)
235 TIGR00382 clpX endopeptidase C 99.1 1.1E-09 2.4E-14 119.9 17.4 217 188-406 78-385 (413)
236 COG0488 Uup ATPase components 99.1 5.8E-10 1.2E-14 126.1 15.6 31 215-245 23-53 (530)
237 PRK14957 DNA polymerase III su 99.1 2.6E-09 5.5E-14 121.2 20.8 187 179-400 8-223 (546)
238 PRK14086 dnaA chromosomal repl 99.1 1E-09 2.2E-14 124.4 17.3 167 222-400 315-491 (617)
239 PRK14951 DNA polymerase III su 99.1 1.8E-09 4E-14 123.9 19.4 192 179-399 8-227 (618)
240 TIGR02640 gas_vesic_GvpN gas v 99.1 1.3E-09 2.9E-14 114.0 16.7 132 221-368 21-198 (262)
241 PRK07133 DNA polymerase III su 99.1 2.7E-09 5.9E-14 123.3 20.2 184 179-390 10-213 (725)
242 PRK14969 DNA polymerase III su 99.1 1.2E-09 2.7E-14 124.7 17.3 188 179-401 8-224 (527)
243 PRK14971 DNA polymerase III su 99.1 3E-09 6.5E-14 123.3 20.6 185 456-678 13-227 (614)
244 PRK14970 DNA polymerase III su 99.1 3.4E-09 7.4E-14 117.0 20.1 176 179-388 9-201 (367)
245 PRK12422 chromosomal replicati 99.1 1.4E-09 3.1E-14 121.4 16.8 156 221-388 141-305 (445)
246 TIGR02397 dnaX_nterm DNA polym 99.1 2.6E-09 5.7E-14 117.5 18.7 176 179-388 6-210 (355)
247 PRK05563 DNA polymerase III su 99.1 2.9E-09 6.2E-14 122.6 19.7 188 179-401 8-224 (559)
248 PRK13341 recombination factor 99.1 2.2E-09 4.9E-14 125.9 19.0 183 179-401 20-221 (725)
249 PRK08903 DnaA regulatory inact 99.1 6.8E-09 1.5E-13 106.6 20.3 170 190-400 23-202 (227)
250 PRK14953 DNA polymerase III su 99.1 5.1E-09 1.1E-13 118.2 19.7 194 179-401 8-224 (486)
251 CHL00081 chlI Mg-protoporyphyr 99.1 1.4E-09 3.1E-14 116.5 13.8 161 455-644 12-232 (350)
252 TIGR02030 BchI-ChlI magnesium 99.1 1.2E-09 2.6E-14 117.2 13.2 155 458-644 2-219 (337)
253 PRK06305 DNA polymerase III su 99.1 9.2E-09 2E-13 115.5 20.8 176 179-388 9-214 (451)
254 COG1219 ClpX ATP-dependent pro 99.1 6E-10 1.3E-14 113.1 10.0 131 461-594 62-203 (408)
255 PRK06647 DNA polymerase III su 99.1 6.4E-09 1.4E-13 119.2 19.6 187 179-400 8-223 (563)
256 PRK14965 DNA polymerase III su 99.1 4.6E-09 1E-13 121.4 18.6 185 179-398 8-221 (576)
257 KOG1969 DNA replication checkp 99.1 1.8E-09 3.9E-14 120.6 14.2 171 492-684 324-518 (877)
258 PRK08727 hypothetical protein; 99.0 9.5E-09 2.1E-13 105.6 18.2 147 221-389 41-197 (233)
259 PHA02244 ATPase-like protein 99.0 3E-09 6.4E-14 113.2 14.7 127 494-640 119-269 (383)
260 PRK00440 rfc replication facto 99.0 9.8E-09 2.1E-13 111.2 18.7 176 179-389 9-196 (319)
261 TIGR02903 spore_lon_C ATP-depe 99.0 1.9E-08 4.2E-13 117.1 22.1 166 180-372 147-370 (615)
262 PRK05642 DNA replication initi 99.0 9.8E-09 2.1E-13 105.5 17.6 146 221-388 45-200 (234)
263 TIGR00678 holB DNA polymerase 99.0 2E-09 4.4E-14 107.0 12.0 143 493-664 13-183 (188)
264 COG1474 CDC6 Cdc6-related prot 99.0 1.8E-08 3.9E-13 109.5 20.2 163 188-370 18-205 (366)
265 PRK08451 DNA polymerase III su 99.0 1.3E-08 2.7E-13 115.0 19.6 189 179-402 6-223 (535)
266 PRK09112 DNA polymerase III su 99.0 5.6E-09 1.2E-13 113.1 16.3 190 456-678 19-245 (351)
267 COG5271 MDN1 AAA ATPase contai 99.0 1.7E-08 3.7E-13 119.4 20.7 130 496-644 890-1047(4600)
268 smart00382 AAA ATPases associa 99.0 1.1E-09 2.4E-14 102.5 9.4 126 495-631 3-147 (148)
269 PF07728 AAA_5: AAA domain (dy 99.0 6.9E-10 1.5E-14 104.6 7.9 109 496-622 1-139 (139)
270 COG0714 MoxR-like ATPases [Gen 99.0 1.1E-09 2.4E-14 118.8 10.5 132 493-644 42-203 (329)
271 TIGR01650 PD_CobS cobaltochela 99.0 2.1E-09 4.6E-14 113.3 11.5 137 220-370 63-235 (327)
272 PRK14955 DNA polymerase III su 99.0 8.3E-09 1.8E-13 114.6 16.6 183 179-389 8-221 (397)
273 PRK14087 dnaA chromosomal repl 99.0 9.5E-09 2E-13 115.3 17.2 168 221-402 141-324 (450)
274 PRK09111 DNA polymerase III su 99.0 2.2E-08 4.7E-13 115.4 20.4 194 179-401 16-237 (598)
275 TIGR03015 pepcterm_ATPase puta 99.0 5.7E-09 1.2E-13 110.1 14.5 189 496-727 45-267 (269)
276 PF07724 AAA_2: AAA domain (Cd 99.0 9.6E-10 2.1E-14 106.8 7.9 110 493-609 2-130 (171)
277 COG5271 MDN1 AAA ATPase contai 99.0 2E-08 4.3E-13 118.9 19.5 133 221-368 888-1047(4600)
278 PRK14948 DNA polymerase III su 99.0 2.2E-08 4.8E-13 116.1 20.2 183 179-390 8-216 (620)
279 COG2607 Predicted ATPase (AAA+ 99.0 1.5E-08 3.3E-13 99.4 15.6 193 453-676 53-276 (287)
280 COG1123 ATPase components of v 99.0 1E-08 2.2E-13 114.1 16.3 33 216-248 30-62 (539)
281 PRK14954 DNA polymerase III su 99.0 2.1E-08 4.7E-13 115.6 19.6 184 179-390 8-222 (620)
282 PRK07471 DNA polymerase III su 99.0 3E-08 6.5E-13 108.0 19.8 185 456-675 15-240 (365)
283 COG0542 clpA ATP-binding subun 99.0 2.8E-09 6.1E-14 123.0 12.1 145 492-648 189-350 (786)
284 PRK11331 5-methylcytosine-spec 99.0 3.1E-09 6.7E-14 116.1 11.6 122 493-630 193-357 (459)
285 TIGR02442 Cob-chelat-sub cobal 99.0 4.4E-09 9.5E-14 123.3 13.7 155 458-644 2-214 (633)
286 TIGR00764 lon_rel lon-related 99.0 4E-09 8.6E-14 122.3 13.1 55 452-521 10-64 (608)
287 PRK05564 DNA polymerase III su 99.0 1E-08 2.2E-13 110.5 15.2 172 458-667 2-185 (313)
288 smart00382 AAA ATPases associa 99.0 3.6E-09 7.8E-14 99.0 10.3 128 221-355 2-147 (148)
289 PHA02244 ATPase-like protein 98.9 2.9E-08 6.2E-13 105.8 16.8 121 221-357 119-263 (383)
290 PRK13531 regulatory ATPase Rav 98.9 1.2E-08 2.7E-13 112.3 14.3 135 493-643 38-193 (498)
291 PRK14950 DNA polymerase III su 98.9 4.6E-08 9.9E-13 113.8 19.5 186 179-399 8-223 (585)
292 PRK06620 hypothetical protein; 98.9 2.2E-08 4.8E-13 101.2 14.0 132 222-389 45-182 (214)
293 PF07726 AAA_3: ATPase family 98.9 1E-09 2.3E-14 98.7 3.3 104 496-622 1-129 (131)
294 COG0593 DnaA ATPase involved i 98.9 7.5E-08 1.6E-12 104.4 17.6 157 220-388 112-278 (408)
295 PF07728 AAA_5: AAA domain (dy 98.9 1.5E-09 3.2E-14 102.3 4.0 109 223-346 1-139 (139)
296 PRK04132 replication factor C 98.9 3.1E-08 6.7E-13 116.9 15.7 156 497-678 567-736 (846)
297 COG2812 DnaX DNA polymerase II 98.9 1.9E-08 4.2E-13 112.0 13.2 194 180-402 9-225 (515)
298 PRK07399 DNA polymerase III su 98.9 1.4E-08 3.1E-13 108.4 11.8 183 458-675 2-223 (314)
299 COG0714 MoxR-like ATPases [Gen 98.8 1.8E-08 3.8E-13 109.4 11.9 129 220-365 42-200 (329)
300 PF07724 AAA_2: AAA domain (Cd 98.8 1.4E-08 3.1E-13 98.7 9.9 112 220-333 2-130 (171)
301 PRK05707 DNA polymerase III su 98.8 3.9E-08 8.4E-13 105.7 14.1 150 493-667 21-198 (328)
302 PRK13407 bchI magnesium chelat 98.8 2E-08 4.2E-13 107.6 11.4 158 183-367 4-215 (334)
303 PF06068 TIP49: TIP49 C-termin 98.8 1.6E-08 3.4E-13 106.5 10.3 65 459-531 23-89 (398)
304 PRK09112 DNA polymerase III su 98.8 2.2E-07 4.7E-12 100.8 19.4 183 181-392 17-236 (351)
305 KOG0745 Putative ATP-dependent 98.8 2E-08 4.2E-13 106.1 10.3 135 495-631 227-386 (564)
306 KOG0927 Predicted transporter 98.8 8.2E-08 1.8E-12 104.6 15.4 29 216-244 96-124 (614)
307 KOG1514 Origin recognition com 98.8 5.9E-08 1.3E-12 108.6 14.5 201 496-728 424-657 (767)
308 KOG1969 DNA replication checkp 98.8 1E-07 2.3E-12 106.8 16.4 163 219-400 324-510 (877)
309 PRK11331 5-methylcytosine-spec 98.8 6.5E-08 1.4E-12 105.9 14.6 121 221-354 194-357 (459)
310 COG2607 Predicted ATPase (AAA+ 98.8 4.4E-07 9.5E-12 89.4 18.6 168 180-375 53-246 (287)
311 PRK14971 DNA polymerase III su 98.8 2.2E-07 4.9E-12 107.9 19.6 177 179-389 9-215 (614)
312 TIGR00368 Mg chelatase-related 98.8 5.6E-08 1.2E-12 109.8 13.3 142 458-634 190-394 (499)
313 PF01078 Mg_chelatase: Magnesi 98.8 5.2E-09 1.1E-13 102.8 4.3 139 459-634 2-205 (206)
314 PRK09087 hypothetical protein; 98.8 7.8E-08 1.7E-12 98.1 13.1 140 221-388 44-187 (226)
315 COG0470 HolB ATPase involved i 98.8 4.3E-08 9.3E-13 106.4 12.0 126 495-641 25-178 (325)
316 TIGR02031 BchD-ChlD magnesium 98.8 9.9E-08 2.1E-12 110.7 15.5 131 495-644 17-174 (589)
317 KOG0991 Replication factor C, 98.8 7.6E-08 1.7E-12 93.8 11.9 136 179-342 19-162 (333)
318 COG1224 TIP49 DNA helicase TIP 98.8 5.8E-07 1.3E-11 93.2 18.9 61 187-258 39-104 (450)
319 PRK08058 DNA polymerase III su 98.8 3.9E-08 8.5E-13 106.3 11.0 149 458-642 3-180 (329)
320 smart00350 MCM minichromosome 98.8 8E-08 1.7E-12 110.1 14.1 164 461-645 204-401 (509)
321 TIGR00678 holB DNA polymerase 98.7 1.6E-07 3.4E-12 93.5 14.4 142 221-388 14-183 (188)
322 CHL00081 chlI Mg-protoporyphyr 98.7 1.1E-07 2.4E-12 102.0 12.8 159 183-367 13-231 (350)
323 PRK08116 hypothetical protein; 98.7 2.4E-08 5.3E-13 104.4 7.6 129 494-641 114-257 (268)
324 COG1220 HslU ATP-dependent pro 98.7 1.8E-07 3.8E-12 96.2 13.0 82 282-365 252-346 (444)
325 TIGR02030 BchI-ChlI magnesium 98.7 1.5E-07 3.3E-12 101.1 13.4 157 185-367 2-218 (337)
326 smart00763 AAA_PrkA PrkA AAA d 98.7 2.5E-07 5.5E-12 98.7 14.4 64 581-647 250-330 (361)
327 TIGR02974 phageshock_pspF psp 98.7 1.4E-07 3E-12 101.9 12.6 169 494-681 22-233 (329)
328 COG3829 RocR Transcriptional r 98.7 3.3E-08 7.1E-13 108.4 7.7 194 456-681 241-479 (560)
329 TIGR00602 rad24 checkpoint pro 98.7 3.8E-07 8.1E-12 105.3 16.7 190 179-388 76-315 (637)
330 PRK10636 putative ABC transpor 98.7 8.3E-08 1.8E-12 113.2 11.0 30 216-245 22-51 (638)
331 PF05621 TniB: Bacterial TniB 98.7 8.2E-07 1.8E-11 92.1 16.6 205 187-410 34-274 (302)
332 KOG1942 DNA helicase, TBP-inte 98.6 3.2E-07 6.8E-12 92.3 12.8 108 554-681 297-418 (456)
333 COG1219 ClpX ATP-dependent pro 98.6 8.5E-08 1.8E-12 97.8 8.9 98 221-318 97-203 (408)
334 PRK13549 xylose transporter AT 98.6 8E-08 1.7E-12 110.7 10.0 46 485-530 277-327 (506)
335 TIGR02655 circ_KaiC circadian 98.6 3.1E-06 6.6E-11 96.6 22.5 78 490-567 259-367 (484)
336 PRK05564 DNA polymerase III su 98.6 1.1E-06 2.4E-11 94.8 17.7 169 185-388 2-182 (313)
337 TIGR00602 rad24 checkpoint pro 98.6 3.6E-07 7.8E-12 105.4 14.1 200 456-682 80-329 (637)
338 PRK15424 propionate catabolism 98.6 1.4E-07 3E-12 107.3 10.5 192 458-680 217-464 (538)
339 PRK07471 DNA polymerase III su 98.6 1.7E-06 3.7E-11 94.4 18.6 179 182-391 14-233 (365)
340 KOG2227 Pre-initiation complex 98.6 1.4E-06 3.1E-11 93.6 17.4 181 491-685 172-383 (529)
341 PRK13531 regulatory ATPase Rav 98.6 4.1E-07 9E-12 100.4 13.5 135 219-367 37-193 (498)
342 PRK06964 DNA polymerase III su 98.6 1.9E-07 4.2E-12 100.3 10.7 133 492-643 19-203 (342)
343 PF07726 AAA_3: ATPase family 98.6 1.8E-08 3.9E-13 90.8 2.2 104 223-346 1-129 (131)
344 COG1220 HslU ATP-dependent pro 98.6 2.5E-07 5.5E-12 95.0 10.5 83 555-641 252-346 (444)
345 PRK11608 pspF phage shock prot 98.6 2E-07 4.4E-12 100.7 10.4 169 494-681 29-240 (326)
346 TIGR03269 met_CoM_red_A2 methy 98.6 2.8E-07 6E-12 106.7 12.2 30 216-245 21-50 (520)
347 TIGR01817 nifA Nif-specific re 98.6 2.6E-07 5.6E-12 107.1 11.6 196 457-682 193-429 (534)
348 COG3604 FhlA Transcriptional r 98.6 1.1E-07 2.4E-12 102.9 7.7 194 456-681 219-456 (550)
349 PRK09862 putative ATP-dependen 98.6 5.7E-07 1.2E-11 101.2 13.8 122 494-634 210-391 (506)
350 PRK15134 microcin C ABC transp 98.6 2.5E-07 5.3E-12 107.3 11.0 46 485-530 301-349 (529)
351 PRK10938 putative molybdenum t 98.6 2E-07 4.4E-12 107.1 10.2 31 216-246 24-54 (490)
352 COG1221 PspF Transcriptional r 98.6 1.9E-07 4.2E-12 100.9 9.3 172 495-685 102-313 (403)
353 PRK11147 ABC transporter ATPas 98.6 1.8E-07 3.9E-12 110.5 10.0 31 216-246 24-54 (635)
354 COG2204 AtoC Response regulato 98.6 1.6E-07 3.6E-12 103.2 8.7 197 459-687 140-380 (464)
355 PRK09700 D-allose transporter 98.5 3.6E-07 7.7E-12 105.5 11.6 46 485-530 278-327 (510)
356 COG0470 HolB ATPase involved i 98.5 6.4E-07 1.4E-11 97.2 12.9 147 189-364 3-177 (325)
357 PRK06871 DNA polymerase III su 98.5 1.3E-06 2.8E-11 93.3 14.7 129 492-643 22-178 (325)
358 PF13177 DNA_pol3_delta2: DNA 98.5 2.9E-07 6.3E-12 88.9 8.9 133 464-630 1-160 (162)
359 PRK07993 DNA polymerase III su 98.5 3.6E-06 7.9E-11 90.8 18.1 154 492-668 22-200 (334)
360 PRK05022 anaerobic nitric oxid 98.5 3.5E-07 7.6E-12 105.0 10.8 193 460-683 187-422 (509)
361 TIGR03015 pepcterm_ATPase puta 98.5 4E-06 8.6E-11 88.4 18.1 172 222-408 44-249 (269)
362 PRK05707 DNA polymerase III su 98.5 2.1E-06 4.5E-11 92.4 15.9 149 221-391 22-198 (328)
363 PRK10762 D-ribose transporter 98.5 3.4E-07 7.4E-12 105.4 10.3 45 486-530 268-316 (501)
364 PRK10982 galactose/methyl gala 98.5 2.4E-07 5.2E-12 106.5 9.0 46 485-530 263-312 (491)
365 TIGR02329 propionate_PrpR prop 98.5 4E-07 8.8E-12 103.7 10.5 196 457-681 209-450 (526)
366 PRK11388 DNA-binding transcrip 98.5 2.2E-07 4.8E-12 110.1 8.6 193 458-681 323-554 (638)
367 PRK07399 DNA polymerase III su 98.5 2.7E-06 5.9E-11 91.0 15.9 179 185-394 2-219 (314)
368 KOG0991 Replication factor C, 98.5 8.1E-07 1.7E-11 86.8 10.4 95 456-566 23-126 (333)
369 TIGR02633 xylG D-xylose ABC tr 98.5 5.2E-07 1.1E-11 103.9 11.0 46 485-530 275-325 (500)
370 PRK15064 ABC transporter ATP-b 98.5 6E-07 1.3E-11 104.1 11.5 30 216-245 22-51 (530)
371 TIGR02442 Cob-chelat-sub cobal 98.5 8E-07 1.7E-11 104.4 12.4 156 185-366 2-212 (633)
372 KOG0745 Putative ATP-dependent 98.5 4.2E-07 9.1E-12 96.3 8.9 97 221-317 226-331 (564)
373 PRK15439 autoinducer 2 ABC tra 98.5 2.5E-07 5.3E-12 106.7 8.0 45 486-530 279-327 (510)
374 PRK08769 DNA polymerase III su 98.5 1.9E-06 4.2E-11 91.8 13.9 156 492-671 24-207 (319)
375 KOG2680 DNA helicase TIP49, TB 98.5 3.4E-06 7.4E-11 85.4 14.6 140 554-738 289-442 (454)
376 PF00158 Sigma54_activat: Sigm 98.5 3.5E-07 7.6E-12 88.6 7.2 109 495-623 23-155 (168)
377 PLN03073 ABC transporter F fam 98.5 6E-07 1.3E-11 106.5 10.6 34 485-518 524-559 (718)
378 COG1116 TauB ABC-type nitrate/ 98.5 7.7E-07 1.7E-11 89.3 9.7 31 216-246 24-54 (248)
379 COG4172 ABC-type uncharacteriz 98.4 6.1E-06 1.3E-10 87.2 16.4 32 216-247 31-62 (534)
380 PRK15429 formate hydrogenlyase 98.4 1.7E-06 3.8E-11 103.2 14.4 194 457-682 373-610 (686)
381 PRK10820 DNA-binding transcrip 98.4 1E-06 2.2E-11 101.3 11.4 168 495-682 228-438 (520)
382 PRK08058 DNA polymerase III su 98.4 2.9E-06 6.3E-11 91.8 14.3 148 186-366 4-180 (329)
383 PRK08181 transposase; Validate 98.4 4.5E-07 9.9E-12 94.4 7.7 71 494-566 106-180 (269)
384 PF00158 Sigma54_activat: Sigm 98.4 8.7E-07 1.9E-11 85.9 9.0 131 189-347 1-155 (168)
385 PRK09302 circadian clock prote 98.4 1.4E-05 3.1E-10 92.1 20.6 78 490-567 269-377 (509)
386 PRK04132 replication factor C 98.4 4.4E-06 9.5E-11 99.0 16.5 152 221-394 564-729 (846)
387 KOG0062 ATPase component of AB 98.4 2.1E-05 4.6E-10 85.7 20.0 28 216-243 101-128 (582)
388 PF01078 Mg_chelatase: Magnesi 98.4 5.1E-07 1.1E-11 88.9 7.0 46 186-246 2-47 (206)
389 PRK08116 hypothetical protein; 98.4 1.4E-06 3E-11 91.3 10.8 100 221-332 114-220 (268)
390 PRK13409 putative ATPase RIL; 98.4 5.3E-07 1.1E-11 104.9 8.2 29 218-246 96-124 (590)
391 PRK11288 araG L-arabinose tran 98.4 5.8E-07 1.2E-11 103.5 8.2 46 485-530 268-317 (501)
392 PRK11819 putative ABC transpor 98.4 1.6E-06 3.4E-11 101.1 11.8 30 216-245 28-57 (556)
393 PRK13765 ATP-dependent proteas 98.4 1.9E-06 4.1E-11 99.9 12.0 53 452-519 23-75 (637)
394 PRK09183 transposase/IS protei 98.4 7.1E-07 1.5E-11 93.0 7.7 71 494-565 102-176 (259)
395 PRK06090 DNA polymerase III su 98.4 3.1E-06 6.8E-11 90.1 12.6 129 492-642 23-178 (319)
396 COG4619 ABC-type uncharacteriz 98.4 2.4E-06 5.2E-11 79.6 10.0 32 215-246 23-54 (223)
397 PRK08699 DNA polymerase III su 98.4 1.9E-06 4.2E-11 92.5 10.9 132 492-642 19-183 (325)
398 COG0606 Predicted ATPase with 98.4 4.7E-07 1E-11 98.2 6.1 48 456-518 175-222 (490)
399 PRK09183 transposase/IS protei 98.4 1.7E-06 3.6E-11 90.3 10.0 74 219-293 100-177 (259)
400 COG1239 ChlI Mg-chelatase subu 98.4 1.2E-05 2.7E-10 86.2 16.7 160 457-646 14-234 (423)
401 PRK10261 glutathione transport 98.3 9.6E-07 2.1E-11 104.1 8.9 46 485-530 339-388 (623)
402 PF01695 IstB_IS21: IstB-like 98.3 4.2E-07 9.1E-12 89.1 4.9 70 493-564 46-119 (178)
403 PRK06526 transposase; Provisio 98.3 6.1E-07 1.3E-11 93.0 6.1 71 494-566 98-172 (254)
404 PRK12377 putative replication 98.3 1.2E-06 2.5E-11 90.2 8.0 70 494-565 101-175 (248)
405 PRK08181 transposase; Validate 98.3 1.9E-06 4E-11 89.8 9.6 73 220-294 105-181 (269)
406 PRK06835 DNA replication prote 98.3 6.4E-07 1.4E-11 96.1 6.3 100 495-609 184-289 (329)
407 PF13401 AAA_22: AAA domain; P 98.3 3.1E-06 6.7E-11 78.6 10.2 98 221-330 4-125 (131)
408 PF13173 AAA_14: AAA domain 98.3 3.4E-06 7.4E-11 78.2 10.3 70 221-292 2-73 (128)
409 TIGR03719 ABC_ABC_ChvD ATP-bin 98.3 4E-06 8.6E-11 97.7 12.9 30 216-245 26-55 (552)
410 PF13401 AAA_22: AAA domain; P 98.3 4.2E-06 9.2E-11 77.6 10.2 98 495-607 5-126 (131)
411 PF03215 Rad17: Rad17 cell cyc 98.3 1E-05 2.3E-10 91.8 15.1 171 495-682 46-269 (519)
412 COG1484 DnaC DNA replication p 98.3 1.6E-06 3.6E-11 89.9 8.0 68 493-565 104-179 (254)
413 PRK08939 primosomal protein Dn 98.3 1.4E-06 3.1E-11 92.7 7.6 70 493-564 155-228 (306)
414 PRK06526 transposase; Provisio 98.3 1.9E-06 4.1E-11 89.3 8.2 72 220-293 97-172 (254)
415 COG3829 RocR Transcriptional r 98.3 2E-06 4.2E-11 94.8 8.5 155 183-365 241-427 (560)
416 PRK06921 hypothetical protein; 98.3 1E-06 2.2E-11 92.2 6.1 68 494-564 117-188 (266)
417 PF01637 Arch_ATPase: Archaeal 98.3 1.3E-05 2.8E-10 82.2 14.3 182 190-391 2-229 (234)
418 PRK15424 propionate catabolism 98.3 2.8E-06 6.1E-11 96.8 9.8 152 185-364 217-408 (538)
419 TIGR00368 Mg chelatase-related 98.3 9.8E-06 2.1E-10 91.8 13.9 48 184-246 189-236 (499)
420 COG1120 FepC ABC-type cobalami 98.2 2.1E-06 4.5E-11 87.7 7.4 31 216-246 23-53 (258)
421 PRK07952 DNA replication prote 98.2 1.2E-06 2.6E-11 89.9 5.7 69 495-565 100-174 (244)
422 PF13173 AAA_14: AAA domain 98.2 4.3E-06 9.3E-11 77.5 8.9 68 496-565 4-73 (128)
423 PRK06964 DNA polymerase III su 98.2 1.1E-05 2.3E-10 87.0 13.0 133 219-367 19-203 (342)
424 TIGR02974 phageshock_pspF psp 98.2 6.5E-06 1.4E-10 88.9 11.1 148 190-365 2-180 (329)
425 COG1484 DnaC DNA replication p 98.2 9.6E-06 2.1E-10 84.2 11.9 72 220-292 104-179 (254)
426 COG1221 PspF Transcriptional r 98.2 3.6E-06 7.8E-11 91.2 8.9 194 183-405 74-309 (403)
427 PF01637 Arch_ATPase: Archaeal 98.2 6.9E-06 1.5E-10 84.2 10.7 162 494-667 20-229 (234)
428 TIGR02031 BchD-ChlD magnesium 98.2 8.5E-06 1.8E-10 94.7 12.2 134 222-368 17-174 (589)
429 PRK05022 anaerobic nitric oxid 98.2 1.7E-05 3.6E-10 91.3 14.5 151 185-363 185-366 (509)
430 PRK11608 pspF phage shock prot 98.2 7.6E-06 1.6E-10 88.5 11.0 150 186-363 5-185 (326)
431 PRK12377 putative replication 98.2 7.5E-06 1.6E-10 84.3 10.4 70 221-292 101-175 (248)
432 smart00350 MCM minichromosome 98.2 5.1E-06 1.1E-10 95.3 10.0 131 221-368 236-400 (509)
433 PF13177 DNA_pol3_delta2: DNA 98.2 1.5E-05 3.3E-10 76.9 11.8 126 191-346 1-153 (162)
434 PRK06871 DNA polymerase III su 98.2 8.5E-05 1.8E-09 79.5 18.3 127 221-367 24-178 (325)
435 PF03215 Rad17: Rad17 cell cyc 98.2 3.9E-05 8.5E-10 87.2 16.6 65 179-251 11-75 (519)
436 PRK06921 hypothetical protein; 98.2 8.8E-06 1.9E-10 85.1 10.6 69 220-291 116-188 (266)
437 COG1239 ChlI Mg-chelatase subu 98.2 2.6E-05 5.7E-10 83.8 14.1 161 183-369 13-233 (423)
438 PF01695 IstB_IS21: IstB-like 98.2 2.6E-06 5.6E-11 83.5 6.0 70 219-290 45-118 (178)
439 KOG2035 Replication factor C, 98.2 0.00011 2.5E-09 74.1 17.4 177 181-391 7-223 (351)
440 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 5.9E-06 1.3E-10 84.1 8.4 58 270-338 147-204 (254)
441 PRK06835 DNA replication prote 98.2 6.1E-06 1.3E-10 88.6 8.8 100 221-332 183-288 (329)
442 cd03216 ABC_Carb_Monos_I This 98.1 6.5E-06 1.4E-10 79.7 8.3 108 216-334 21-143 (163)
443 PRK15429 formate hydrogenlyase 98.1 1.9E-05 4.1E-10 94.4 13.9 152 184-364 373-556 (686)
444 KOG0990 Replication factor C, 98.1 1.2E-05 2.6E-10 82.7 10.2 156 458-649 39-208 (360)
445 PRK10820 DNA-binding transcrip 98.1 2.6E-05 5.6E-10 89.7 14.2 153 182-362 199-382 (520)
446 PRK07952 DNA replication prote 98.1 6.8E-06 1.5E-10 84.4 8.2 70 222-293 100-175 (244)
447 KOG1942 DNA helicase, TBP-inte 98.1 9.5E-05 2.1E-09 74.9 15.8 28 220-247 63-90 (456)
448 COG3842 PotA ABC-type spermidi 98.1 6.1E-06 1.3E-10 88.2 7.9 108 216-333 26-197 (352)
449 COG1118 CysA ABC-type sulfate/ 98.1 9E-06 2E-10 83.4 8.7 109 216-334 23-199 (345)
450 PF05729 NACHT: NACHT domain 98.1 2.4E-05 5.2E-10 75.5 11.5 140 223-369 2-164 (166)
451 TIGR02329 propionate_PrpR prop 98.1 8E-06 1.7E-10 93.2 9.3 155 184-364 209-393 (526)
452 COG1124 DppF ABC-type dipeptid 98.1 1.2E-05 2.6E-10 80.1 9.2 30 216-245 28-57 (252)
453 PF14532 Sigma54_activ_2: Sigm 98.1 2.8E-06 6E-11 79.9 4.2 85 494-607 21-108 (138)
454 cd01120 RecA-like_NTPases RecA 98.1 2.3E-05 4.9E-10 75.4 10.7 111 497-611 2-139 (165)
455 PRK08939 primosomal protein Dn 98.1 1.3E-05 2.8E-10 85.4 9.6 71 220-292 155-229 (306)
456 KOG1514 Origin recognition com 98.1 0.00013 2.8E-09 82.6 17.6 172 221-403 422-626 (767)
457 COG3839 MalK ABC-type sugar tr 98.1 1.1E-05 2.4E-10 85.7 9.0 31 216-246 24-54 (338)
458 COG1126 GlnQ ABC-type polar am 98.1 1.7E-05 3.7E-10 77.6 9.4 29 216-244 23-51 (240)
459 TIGR01817 nifA Nif-specific re 98.1 6.8E-06 1.5E-10 95.3 7.9 125 184-333 193-341 (534)
460 cd03222 ABC_RNaseL_inhibitor T 98.1 8.1E-06 1.8E-10 79.8 7.1 74 217-290 21-99 (177)
461 COG2884 FtsE Predicted ATPase 98.1 1.9E-05 4.2E-10 75.4 9.3 31 215-245 22-52 (223)
462 KOG0066 eIF2-interacting prote 98.1 4E-05 8.7E-10 81.4 12.4 34 485-518 602-637 (807)
463 TIGR02915 PEP_resp_reg putativ 98.1 8.2E-06 1.8E-10 92.7 8.1 169 494-682 162-373 (445)
464 COG2204 AtoC Response regulato 98.0 1.1E-05 2.4E-10 89.0 8.3 152 185-365 139-322 (464)
465 PRK13406 bchD magnesium chelat 98.0 2.1E-05 4.5E-10 90.7 10.8 122 495-635 26-173 (584)
466 PRK08699 DNA polymerase III su 98.0 3.6E-05 7.8E-10 82.8 12.0 131 219-366 19-183 (325)
467 PRK07993 DNA polymerase III su 98.0 8.8E-05 1.9E-09 80.1 14.9 148 221-391 24-199 (334)
468 PTZ00111 DNA replication licen 98.0 1.3E-05 2.8E-10 94.6 9.0 132 492-643 490-656 (915)
469 PRK11388 DNA-binding transcrip 98.0 3.5E-05 7.6E-10 91.5 12.9 152 183-362 321-500 (638)
470 TIGR02237 recomb_radB DNA repa 98.0 3E-05 6.6E-10 78.4 10.6 78 217-294 8-111 (209)
471 COG1126 GlnQ ABC-type polar am 98.0 4.3E-06 9.4E-11 81.6 4.1 46 483-528 15-64 (240)
472 smart00763 AAA_PrkA PrkA AAA d 98.0 1.2E-05 2.7E-10 86.0 7.8 81 188-276 52-144 (361)
473 PF14532 Sigma54_activ_2: Sigm 98.0 1.4E-05 3E-10 75.1 7.3 59 221-293 21-82 (138)
474 COG1136 SalX ABC-type antimicr 98.0 2.8E-05 6.1E-10 78.0 9.8 31 215-245 25-55 (226)
475 PRK06851 hypothetical protein; 98.0 0.00013 2.8E-09 78.9 15.6 34 495-528 215-251 (367)
476 cd01120 RecA-like_NTPases RecA 98.0 2.9E-05 6.3E-10 74.6 9.7 72 224-295 2-100 (165)
477 PRK15115 response regulator Gl 98.0 2.6E-05 5.7E-10 88.6 10.8 163 495-681 158-367 (444)
478 KOG2035 Replication factor C, 98.0 7.1E-05 1.5E-09 75.5 12.3 151 495-664 35-220 (351)
479 cd03214 ABC_Iron-Siderophores_ 98.0 1.3E-05 2.8E-10 79.1 7.1 110 216-335 20-160 (180)
480 COG4608 AppF ABC-type oligopep 98.0 1.5E-05 3.3E-10 81.2 7.6 109 215-333 33-170 (268)
481 COG1618 Predicted nucleotide k 98.0 5.6E-05 1.2E-09 70.4 10.6 27 220-246 4-30 (179)
482 PRK10923 glnG nitrogen regulat 98.0 5.2E-05 1.1E-09 86.8 13.0 167 494-682 161-372 (469)
483 cd03228 ABCC_MRP_Like The MRP 98.0 1E-05 2.3E-10 79.0 6.2 109 216-336 23-158 (171)
484 PRK08769 DNA polymerase III su 98.0 0.00014 3.1E-09 77.6 15.1 150 221-391 26-203 (319)
485 COG1122 CbiO ABC-type cobalt t 98.0 1.2E-06 2.6E-11 89.3 -0.8 97 215-311 24-123 (235)
486 KOG2227 Pre-initiation complex 98.0 0.00023 5E-09 77.0 16.2 186 187-391 150-363 (529)
487 KOG0990 Replication factor C, 98.0 1.2E-05 2.6E-10 82.7 6.2 159 180-370 34-205 (360)
488 PF00910 RNA_helicase: RNA hel 98.0 2.1E-05 4.5E-10 70.4 7.0 94 497-608 1-107 (107)
489 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 1.7E-05 3.8E-10 75.0 6.8 76 216-291 21-99 (144)
490 PRK06090 DNA polymerase III su 97.9 0.00023 5E-09 76.0 16.0 127 221-366 25-178 (319)
491 COG1119 ModF ABC-type molybden 97.9 3.7E-05 8.1E-10 76.8 8.8 32 215-246 51-82 (257)
492 cd03246 ABCC_Protease_Secretio 97.9 3.2E-05 6.8E-10 75.8 8.4 108 216-334 23-157 (173)
493 cd03247 ABCC_cytochrome_bd The 97.9 3.5E-05 7.6E-10 75.8 8.7 77 215-291 22-127 (178)
494 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00018 4E-09 79.1 14.6 175 497-683 113-322 (634)
495 COG3604 FhlA Transcriptional r 97.9 1.9E-05 4.1E-10 86.0 7.0 128 184-333 220-368 (550)
496 PRK09862 putative ATP-dependen 97.9 4.1E-05 8.9E-10 86.4 9.9 125 218-358 207-391 (506)
497 PF09336 Vps4_C: Vps4 C termin 97.9 1.1E-05 2.3E-10 63.7 3.7 35 712-746 28-62 (62)
498 PF12775 AAA_7: P-loop contain 97.9 2.6E-05 5.5E-10 81.9 7.6 139 220-369 32-194 (272)
499 PF06068 TIP49: TIP49 C-termin 97.9 3.2E-05 7E-10 81.9 8.3 72 187-266 24-97 (398)
500 TIGR01818 ntrC nitrogen regula 97.9 4.2E-05 9E-10 87.4 9.9 170 495-683 158-369 (463)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-116 Score=948.18 Aligned_cols=679 Identities=60% Similarity=1.000 Sum_probs=627.9
Q ss_pred CCCceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCCee
Q 042193 4 KSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGDLV 83 (784)
Q Consensus 4 ~~~~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~v 83 (784)
..++.+.|.. .+++.+.+-+++..|..+++..| |.+.|+++...++.+...+. ....+.++...|.++.++.|+.|
T Consensus 13 ~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~~~~~~ 88 (693)
T KOG0730|consen 13 CPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSRSNLRLQLGRLL 88 (693)
T ss_pred cCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheeccchhhccccee
Confidence 4567788877 55555689999999999999999 99999876665544333333 66788899999999999999999
Q ss_pred eEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeCCCc
Q 042193 84 SVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDT 163 (784)
Q Consensus 84 ~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t 163 (784)
.++.++.+..+..+.+.++..+..++..+.++.+.+.|+....+++..|+++ ..+..+.|++.+..|.. +++++|
T Consensus 89 ~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~v~~~t 163 (693)
T KOG0730|consen 89 HSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELDPSP--QVTPDT 163 (693)
T ss_pred cccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccccch--hcCccc
Confidence 9999888888888999999988888888888888999998888899999988 34445678888887766 778889
Q ss_pred eEEEcCCCCccchhhhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 042193 164 EIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243 (784)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~ 243 (784)
.+.+.+.+...... + .++++ +++||+..++..+++++.+|+.+|..+.++|+++++++|+|||||||||.+++++|+
T Consensus 164 ~~~~~~~~~~~~~~-~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~ 240 (693)
T KOG0730|consen 164 ELSYLGEPAKREEE-E-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVAN 240 (693)
T ss_pred hhhhcCCCcccccc-c-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHH
Confidence 88888777765443 2 46677 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcC-CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 042193 244 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA 322 (784)
Q Consensus 244 ~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 322 (784)
+.+++++.++++++++++.|+++++++.+|+.+..++ |+++||||+|.+++++....+ +++|+..||+++|+++....
T Consensus 241 e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~ 319 (693)
T KOG0730|consen 241 EYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDA 319 (693)
T ss_pred HhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcC
Confidence 9999999999999999999999999999999999999 999999999999999987666 88999999999999999999
Q ss_pred cEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHH
Q 042193 323 HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAA 402 (784)
Q Consensus 323 ~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 402 (784)
+++|+++||+|+.||+++|| |||+++++++.|+..+|.+|++.+++.+.+.+++++..++..++||+|+|+.++|++|+
T Consensus 320 ~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~ 398 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREAS 398 (693)
T ss_pred cEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhhhhhhccccccccCC
Q 042193 403 LQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEH 482 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~ 482 (784)
+.+.++ +.++|..|+..+.|+++++..++.|+++|+||||++++|+.|++.+.||+++
T Consensus 399 ~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~ 456 (693)
T KOG0730|consen 399 LQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKH 456 (693)
T ss_pred HHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhc
Confidence 988765 4567889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEecc
Q 042193 483 PEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 562 (784)
Q Consensus 483 ~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEi 562 (784)
++.|.++|+++++|||||||||||||++|+++|++++.+|++|++++++++|+|++|+.++++|++|++..|||+|||||
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHH
Q 042193 563 DSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 563 d~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~ 642 (784)
|+++..|+.+. +++.+|++++||++|||+...++|+||||||||+.||+|++||||||+.||||+||.+.|.+||+.
T Consensus 537 Dsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 537 DALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred HhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHH
Confidence 99999998432 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHH
Q 042193 643 CLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEES 722 (784)
Q Consensus 643 ~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 722 (784)
+++++++++++|+.+||+.|+|||||||.++|++|++.|+++.++. ..|+.+||++|
T Consensus 614 ~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a-----------------------~~i~~~hf~~a 670 (693)
T KOG0730|consen 614 CAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA-----------------------TEITWQHFEEA 670 (693)
T ss_pred HHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc-----------------------ccccHHHHHHH
Confidence 9999999999999999999999999999999999999999998764 36999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHH
Q 042193 723 MKYARRSVSDADIRKYQLFAQT 744 (784)
Q Consensus 723 l~~~~~s~~~~~~~~~~~~~~~ 744 (784)
++..+++++.+++++|++|.++
T Consensus 671 l~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 671 LKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHhhcccCCHHHHHHHHHHhhc
Confidence 9999999999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-112 Score=901.77 Aligned_cols=555 Identities=48% Similarity=0.846 Sum_probs=509.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
..+.|.+|||+++++.++.+++.. ++||+.|.++|+.|++|||||||||||||+||+++|++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 356899999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccC----CcEEEEEEcCCCCCCC
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSR----AHVVVMGATNRPNSID 337 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~vivI~atn~~~~ld 337 (784)
.|+++++++.+|..|....|||+||||||++.++|...+.++++|++.||++.||++... ..|+||||||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998765 5799999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccc--
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 415 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 415 (784)
|+|||.|||+++|.+++|++.+|.+||+..++++.+..+.++..+|..|+||+|+|+.+||.+|+..++++..+...-
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886552210
Q ss_pred -----ccc---------h-----------------------------hhHhhhhcccccchhhhhhcccCCccccccccc
Q 042193 416 -----EDE---------T-----------------------------IDAEVLNSMAVTNEHFRTALEMSNPSALRETVV 452 (784)
Q Consensus 416 -----~~~---------~-----------------------------~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~ 452 (784)
.+. . ...+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 000 0 011223456688899999999999999999999
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
.+|+++|+|||++++++.+|..++.||.++++.|+.+|+..|.|+||+||||||||.||||+|++.+.+|+.|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|+|+||+.||.+|++||...||||||||||+|.++|+... ...+.|++||||++|||++...+|+||||||||+.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999997643 467899999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhc--cCCCCCccCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPISPDVDLSALARYTH--GFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
|||+|||||||+.+|+++|+.++|.+||+.+++ +.+++.++|++.||+.+. ||||+||.+||++|+..|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 889999999999999876 9999999999999999999998763
Q ss_pred HHHHHhhccccCCCCcccccc-CcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhccC
Q 042193 689 DIERERSGKRKRENPEAMEVD-DVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRG 750 (784)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~~~ 750 (784)
.... .. ..... ....+|..||++|++.++||+++++...|+...+.++-+.+
T Consensus 741 ~~~~---------~~-~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~ 793 (802)
T KOG0733|consen 741 IDSS---------ED-DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTA 793 (802)
T ss_pred cccc---------Cc-ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhccccc
Confidence 2110 00 00000 02258899999999999999999999999999888764443
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.1e-98 Score=887.84 Aligned_cols=723 Identities=50% Similarity=0.843 Sum_probs=637.2
Q ss_pred ceEEEecccC-C-CCcEEEECHHhHhhcCCCCCCEEEEe-eCCCceEEEEEEc--CCCCCCCeEEEcHHHHhhccccCCC
Q 042193 7 NRLVIDEAIN-D-DNSVITMHPNTMDKLQFFQGDTVLVK-GKKRKDTVCIVLG--DEQCEESKVGMNRVVRSNLRVRLGD 81 (784)
Q Consensus 7 ~~l~v~~~~~-~-~~~~v~l~~~~m~~Lgl~~gd~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~g~ 81 (784)
..++|.++.+ + |+++++|+|++|.+||+..||+|.|. |++ .+++.+|+ .++++.+.|+|++.+|.|+|+++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (733)
T TIGR01243 2 VELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGD 79 (733)
T ss_pred eEEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCC
Confidence 4688999965 4 99999999999999999999999999 544 45778886 3578899999999999999999999
Q ss_pred eeeEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeCC
Q 042193 82 LVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAP 161 (784)
Q Consensus 82 ~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~ 161 (784)
.|+|+++ .++.+..|.+.|..... .+..+..+++.++. .+++..|+.+.+........|+|+++.|..++.++.
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~ 153 (733)
T TIGR01243 80 TVTVERA-EVKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTE 153 (733)
T ss_pred eEEEeec-CCCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECC
Confidence 9999996 47789999988864321 12345567777775 478999999887654456789999999999999999
Q ss_pred CceEEEcCCCCccchhhhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHH
Q 042193 162 DTEIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAV 241 (784)
Q Consensus 162 ~t~i~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~l 241 (784)
.|.+.+...+...... ...++++|++|+|++++++.+++++.+|+.+|++++.+++.+++++||+||||||||++++++
T Consensus 154 ~t~~~~~~~~~~~~~~-~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~larai 232 (733)
T TIGR01243 154 ATEVEIREKPVREEIE-RKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAV 232 (733)
T ss_pred CceEEecCCccccccc-cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHH
Confidence 9988775544322111 235678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 042193 242 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSR 321 (784)
Q Consensus 242 a~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 321 (784)
|++++.+++.++++++.+.+.|+.+..++.+|+.+....|++|||||+|.++++++...+..+.++..+|+++++++..+
T Consensus 233 a~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 233 ANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred HHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999987777778889999999999999888
Q ss_pred CcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHH
Q 042193 322 AHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEA 401 (784)
Q Consensus 322 ~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a 401 (784)
..++||++||+++.+|+++++++||+..++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..++++|
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a 392 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEA 392 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHhhcc--ccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhhhhhhccccccc
Q 042193 402 ALQCIREKMD--VIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYP 479 (784)
Q Consensus 402 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~ 479 (784)
++.++++... ........+.........++..+|..++..+.|+..++...+.|++.|++++|++.+|+.|.+.+.||
T Consensus 393 ~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~ 472 (733)
T TIGR01243 393 AMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWP 472 (733)
T ss_pred HHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhh
Confidence 9988876543 22222223333444556788999999999999999998888899999999999999999999999999
Q ss_pred cCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEE
Q 042193 480 VEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFF 559 (784)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 559 (784)
+.+++.+..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||
T Consensus 473 ~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifi 552 (733)
T TIGR01243 473 LKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFF 552 (733)
T ss_pred hhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHH
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQI 639 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~i 639 (784)
||||++++.|+... .....++++++||.+||++....+++||+|||+|+.||+|++||||||++|+||+|+.++|.+|
T Consensus 553 DEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 553 DEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 99999999886432 2346789999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHH
Q 042193 640 FKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHF 719 (784)
Q Consensus 640 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 719 (784)
|+.++++.++..++++..+|+.|+||||+||.++|++|++.|+++.+......... . ..........|+++||
T Consensus 631 ~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~-----~--~~~~~~~~~~i~~~~f 703 (733)
T TIGR01243 631 FKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE-----V--GEEEFLKDLKVEMRHF 703 (733)
T ss_pred HHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh-----c--ccccccccCcccHHHH
Confidence 99999999999999999999999999999999999999999999875432100000 0 0000011247999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 042193 720 EESMKYARRSVSDADIRKYQLFAQTLQQ 747 (784)
Q Consensus 720 ~~al~~~~~s~~~~~~~~~~~~~~~~~~ 747 (784)
++|+++++||++++++.+|++|.++|+.
T Consensus 704 ~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 704 LEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999853
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-85 Score=712.16 Aligned_cols=615 Identities=36% Similarity=0.594 Sum_probs=495.1
Q ss_pred hhHHHHHHHhhccCCcccccCcEEEEeec------------------ceEEEEEEEEecCCc---eEEeCCCceEEEcCC
Q 042193 112 SLFDAYLKSYFTGSYRPVRKGDLFLVRGG------------------VRSVEFKVIETDPGE---YCIVAPDTEIFCEGE 170 (784)
Q Consensus 112 ~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~f~v~~~~p~~---~~~~~~~t~i~~~~~ 170 (784)
+.....++.||+ +.|.++.||+|++... ...++|+|++++|.. +++..+.|.+...+.
T Consensus 304 ~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~~ 382 (953)
T KOG0736|consen 304 GNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVGA 382 (953)
T ss_pred hHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEccc
Confidence 456678899997 6789999999987432 236899999999853 566667788876554
Q ss_pred CCccch--hhhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc
Q 042193 171 PVKRED--EEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF 248 (784)
Q Consensus 171 ~~~~~~--~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~ 248 (784)
...+.. ......-.++-..-+.+..+..+..++.-+ ..| ...++.-...+||+|+|||||||+++++|.+++.+
T Consensus 383 ~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~-~~~---s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 383 TSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQ-KQP---SGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred cccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCcc-cCc---chhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 332200 000000001222233344333333333221 111 12233445579999999999999999999999999
Q ss_pred EEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh---ccccCCcEE
Q 042193 249 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD---GLKSRAHVV 325 (784)
Q Consensus 249 ~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~vi 325 (784)
++.++|.++.....+..+.++...|+.++...|+|||+-++|.+.-++.. ....++.+.+..++. .-....+++
T Consensus 459 ~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~i 535 (953)
T KOG0736|consen 459 LLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVI 535 (953)
T ss_pred eEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999999999999999999999855433 334455555544443 333567899
Q ss_pred EEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHH
Q 042193 326 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQC 405 (784)
Q Consensus 326 vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 405 (784)
|+++|+..+.+++.+++ .|.++|.++.|++++|.+||+.++....+..++.+..++.+|.||+.+++.+++......+
T Consensus 536 vv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 536 VVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAA 613 (953)
T ss_pred EEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHH
Confidence 99999999999999998 6778899999999999999999999999999999999999999999999999988763333
Q ss_pred HHhhcccc---ccccchhhHhhhhcccccchhhhhhcccCCcccccc-cccccCCcccccccchhhhhhhhccccccccC
Q 042193 406 IREKMDVI---DLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRE-TVVEVPNVSWEDIGGLETVKRELQETVQYPVE 481 (784)
Q Consensus 406 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 481 (784)
..+..... ...+..-.........++++||.+++...+...... ....+|+++|+||||++++|..+.+.+..|++
T Consensus 614 ~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~ 693 (953)
T KOG0736|consen 614 KTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLK 693 (953)
T ss_pred HHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCccc
Confidence 22211110 111111111223457788999999998765443332 34568999999999999999999999999999
Q ss_pred ChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEec
Q 042193 482 HPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 561 (784)
Q Consensus 482 ~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDE 561 (784)
|+++|.. |+++..|+|||||||||||.+|||+|.++..+|++|+|+|++++|+|+||+++|++|++||..+||||||||
T Consensus 694 hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 694 HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDE 772 (953)
T ss_pred Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEecc
Confidence 9999987 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--CCCcEEEEEecCCCCCCCccccCCCCcccccccCCC-CHHHHHH
Q 042193 562 LDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLP-DEASRLQ 638 (784)
Q Consensus 562 id~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p-~~~~r~~ 638 (784)
+|++++.||.+ ++++++.+|+++|||.||||+. ..+.|||||||||||.|||||+||||||+.+|+.++ +.+.+..
T Consensus 773 LDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~ 851 (953)
T KOG0736|consen 773 LDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLR 851 (953)
T ss_pred ccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHH
Confidence 99999999987 6779999999999999999998 567899999999999999999999999999999988 5677899
Q ss_pred HHHHHhccCCCCCccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHH
Q 042193 639 IFKACLRKSPISPDVDLSALARYT-HGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAA 717 (784)
Q Consensus 639 il~~~~~~~~~~~~~~~~~la~~~-~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 717 (784)
+|+...+++.++.++|+.++|+.+ ..|||||+.++|..|.+.|+++.+......... ..........|+++
T Consensus 852 vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~--------~~e~~~~~v~V~~e 923 (953)
T KOG0736|consen 852 VLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTIS--------EEEQESSSVRVTME 923 (953)
T ss_pred HHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc--------ccccCCceEEEEHH
Confidence 999999999999999999999987 579999999999999999999987654322110 01111223479999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 042193 718 HFEESMKYARRSVSDADIRKYQLFAQTLQ 746 (784)
Q Consensus 718 ~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 746 (784)
||.++.++.+||+|++++.+||.++.+|.
T Consensus 924 Dflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 924 DFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999985
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-71 Score=596.83 Aligned_cols=498 Identities=36% Similarity=0.572 Sum_probs=421.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~----~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
.+.+|||+||+|||||.|+++++++.. +++..++|+.+.........+.+..+|..+..+.|+|+++|++|.|...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 346799999999999999999999874 4568899999887777777888999999999999999999999999873
Q ss_pred CCC---CchHHHHHHHHHHHHHhhccc-cCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC
Q 042193 296 REK---TNGEVERRIVSQLLTLMDGLK-SRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM 371 (784)
Q Consensus 296 ~~~---~~~~~~~~v~~~Ll~~ld~~~-~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~ 371 (784)
.+. ..+....++...+......+. .+..+.+|++.+....++|.|-.+++|+..+.++.|+..+|.+||+..+.+.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 222 223344444444434443333 3456799999999999999999999999999999999999999999877654
Q ss_pred Cc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCccccccc
Q 042193 372 KL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRET 450 (784)
Q Consensus 372 ~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~ 450 (784)
.. ....+++-++..|+||...|+..++.+|...++..... .....++.++|.++|+.+.|.++|..
T Consensus 590 ~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris-------------~~~klltke~f~ksL~~F~P~aLR~i 656 (952)
T KOG0735|consen 590 LSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS-------------NGPKLLTKELFEKSLKDFVPLALRGI 656 (952)
T ss_pred hhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-------------cCcccchHHHHHHHHHhcChHHhhhc
Confidence 42 12334556999999999999999999998877633211 01125788899999999999999986
Q ss_pred ccccC-CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 451 VVEVP-NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 451 ~~~~~-~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
....+ ++.|+||||+.++|+.|.+.+.||.+++..|...+++.+.|+|||||||||||+||.++|..++..||+|+|++
T Consensus 657 k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE 736 (952)
T KOG0735|consen 657 KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE 736 (952)
T ss_pred cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH
Confidence 55544 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
++++|+|.+|+++|.+|.+|+...|||+||||+|+++++||. ++.|+.+|++||||++|||.+...+|+|+|||.||
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh---DsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH---DSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC---CCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 999999999999999999999999999999999999999986 45689999999999999999999999999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKD 689 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 689 (784)
+.|||||+||||+|+.+++|+|+..+|.+|++.+.....++.++|++.+|..|+|||||||+.++..|.+.|+++.+...
T Consensus 814 dliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 814 DLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred cccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred HHHHhhccccCCCCccccccCcccccHHHHHHHH--hhccCCCCHHHHHHHHHHHHHHhhcc
Q 042193 690 IERERSGKRKRENPEAMEVDDVDEITAAHFEESM--KYARRSVSDADIRKYQLFAQTLQQSR 749 (784)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al--~~~~~s~~~~~~~~~~~~~~~~~~~~ 749 (784)
... +..+.++...+.... ...+|+.+.-+-+.+.+...+|-..+
T Consensus 894 ~~~----------------~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 894 DEE----------------GVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred Ccc----------------ccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 210 001123333333322 46688888777777777776665443
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-65 Score=583.35 Aligned_cols=489 Identities=56% Similarity=0.915 Sum_probs=450.1
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEE
Q 042193 205 LPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 284 (784)
Q Consensus 205 ~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 284 (784)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..++++++.+++.++.+..++.+|+.+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678889999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 042193 285 FIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVF 364 (784)
Q Consensus 285 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il 364 (784)
++||++.+.+.+........++++.+++..++++. +..+++++.+|++..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999988667788999999999999998 54588889999999999999999999999999999999999999
Q ss_pred HHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCc
Q 042193 365 RIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNP 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p 444 (784)
..+...+....+.+...++..+.||.++++..+++++.+...++.. ........++.+++..++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999999888888999999999999999999999999888877642 01123455777889999998888
Q ss_pred ccccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 445 SALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 445 s~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
+ +......+.+.|.++||++.+|+.+.+.+.+|+.+++.|...++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 525 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 525 v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
+++++++++|+|+++++++.+|+.|+...||||||||+|++++.|+.+. .+...+++++||.+|+++....+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 9999999999999999999999999999999999999999999987542 2234799999999999999999999999
Q ss_pred ecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC--CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 605 ATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 605 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
|||+|+.||+|++||||||.+++||+||.++|.+||+.+++... +..++++..+++.++||||+||..+|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998554 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHH
Q 042193 683 RENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLF 741 (784)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~ 741 (784)
++.. ...||.+||.+|++.++|+++ |++|
T Consensus 464 ~~~~------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 8863 125999999999999999999 7777
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-59 Score=493.72 Aligned_cols=603 Identities=28% Similarity=0.441 Sum_probs=449.3
Q ss_pred eEEEecccCC---CCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCCeee
Q 042193 8 RLVIDEAIND---DNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGDLVS 84 (784)
Q Consensus 8 ~l~v~~~~~~---~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~v~ 84 (784)
.++|.++..+ -.+.++++|.+.++-++ ..+... ..++.......+++|.|.++..+|+|+++++|+.|.
T Consensus 10 ~~~v~k~ps~e~altn~a~v~~~DF~~~~~-----~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~ 81 (744)
T KOG0741|consen 10 AFQVTKCPSNELALTNCAYVSPSDFRQFQV-----IIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVE 81 (744)
T ss_pred eeeeecCCchhhhccCcceeCcccccccee-----eEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeE
Confidence 3677777654 56678899988865442 122221 355566666788999999999999999999999999
Q ss_pred EEecCCC---CCCcEEEecc--cc---ccccccch-hhHHHHHHHhhccCCcccccCcEEEEeecc-eEEEEEEEEec--
Q 042193 85 VHACPDV---KYGRRVHILP--ID---DTIEGVTG-SLFDAYLKSYFTGSYRPVRKGDLFLVRGGV-RSVEFKVIETD-- 152 (784)
Q Consensus 85 v~~~~~~---~~~~~v~~~~--~~---~~~~~~~~-~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~-- 152 (784)
|+++... ++...+++.. .. .+...+.. ++..++...|- ..++.+|+.+.+...+ ..+.++|.+++
T Consensus 82 V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~ 158 (744)
T KOG0741|consen 82 VKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAF 158 (744)
T ss_pred EEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeee
Confidence 9986422 2223333321 11 11112222 23333434433 3568899988776543 45667776553
Q ss_pred -C--------------CceEEeCCCceEEEcCCCCcc----------chhhh-hcCCCCcc--cccChHHHHHHH-HHHH
Q 042193 153 -P--------------GEYCIVAPDTEIFCEGEPVKR----------EDEEE-RLNEVGYD--DVGGVRKQMAQI-RELV 203 (784)
Q Consensus 153 -p--------------~~~~~~~~~t~i~~~~~~~~~----------~~~~~-~~~~~~~~--~i~G~~~~~~~l-~~~~ 203 (784)
| ..+++++.+|.|.+.+..... ...+. .-++..|+ .|||+++++..| ++++
T Consensus 159 D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAF 238 (744)
T KOG0741|consen 159 DPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAF 238 (744)
T ss_pred ccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHH
Confidence 3 135788888988554322111 00000 11233333 589999999987 8888
Q ss_pred HcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-EEEEechhhhhhhcchhHHHHHHHHHHHHhc---
Q 042193 204 ELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF-FFLINGPEIMSKLAGESESNLRKAFEEAEKN--- 279 (784)
Q Consensus 204 ~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~-~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~--- 279 (784)
......|++.+++|+..-+|+|||||||||||.+||.|...|++. ...|||++++++|+|++++++|.+|++|++.
T Consensus 239 AsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~ 318 (744)
T KOG0741|consen 239 ASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR 318 (744)
T ss_pred HhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh
Confidence 888999999999999999999999999999999999999999864 5889999999999999999999999999763
Q ss_pred -----CCeEEEeehhhhhcCCCCCCch--HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 280 -----APSIIFIDEIDSIAPKREKTNG--EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 280 -----~p~il~iDEid~l~~~~~~~~~--~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
.-.|+++||||++|.+|++..+ .+.+.+++||+..||++.+-.+++|||.||+++.||+||.|||||...+++
T Consensus 319 ~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 319 LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 2379999999999999987644 578999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC----cccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcc
Q 042193 353 GVPDEVGRLEVFRIHTKNMK----LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSM 428 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~----~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (784)
..|++..|++||++|+.+|. +..++|+.++|..|.+|+|++++.+++.|...++.+....- .....+....+.+
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~l 476 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENL 476 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhe
Confidence 99999999999999998875 67899999999999999999999999999888887765432 1233445556788
Q ss_pred cccchhhhhhcccCCccccccc-----ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCC
Q 042193 429 AVTNEHFRTALEMSNPSALRET-----VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPP 503 (784)
Q Consensus 429 ~v~~~d~~~al~~~~ps~~~~~-----~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~ 503 (784)
.+++.||..||..+.|+..... .+...-+.|.... -+.+.+ ........+.-..++-.++||.|||
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v-----~~il~~----G~llv~qvk~s~~s~lvSvLl~Gp~ 547 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPV-----TRILDD----GKLLVQQVKNSERSPLVSVLLEGPP 547 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccH-----HHHHhh----HHHHHHHhhccccCcceEEEEecCC
Confidence 9999999999999998764321 1112224453211 111111 0011112222244556679999999
Q ss_pred CCChhHHHHHHHHHhCCcEEEEecccchhcccCcch----HHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCc
Q 042193 504 GCGKTLLAKAIANECQANFVSVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGA 579 (784)
Q Consensus 504 GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~----~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~ 579 (784)
|+|||+||..+|..+++||+.+-.++-+ +|-+| ..+..+|+.|+++.-+||++|+|+.|...-.- ....
T Consensus 548 ~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI----GPRf 620 (744)
T KOG0741|consen 548 GSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI----GPRF 620 (744)
T ss_pred CCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc----Cchh
Confidence 9999999999999999999999877654 34443 36899999999999999999999999865321 1245
Q ss_pred hHHHHHHHHHHhhCCCC-CCcEEEEEecCCCCCCCc-cccCCCCcccccccCCCCH-HHHHHHHH
Q 042193 580 ADRVLNQLLTEMDGMNA-KKTVFIIGATNRPDVIDP-ALLRPGRLDQLIYIPLPDE-ASRLQIFK 641 (784)
Q Consensus 580 ~~~~l~~ll~~ld~~~~-~~~v~vi~aTn~~~~ld~-allr~gRf~~~i~~~~p~~-~~r~~il~ 641 (784)
++.+++.|+..+...+. .++++|+|||.+.+.|.. .++. .|+..+++|.... ++..+++.
T Consensus 621 SN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 621 SNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 67778888888887654 468999999999888855 4555 8999999997654 55555554
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-58 Score=467.55 Aligned_cols=252 Identities=48% Similarity=0.823 Sum_probs=241.8
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
..+.|+++|+||||+++.++.|++.++.|+++|++|..+|+.||+|+|||||||||||+||||+|+..+++|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 610 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~ 610 (784)
..+|+|+..+.+|.+|+.|+..+||||||||||+++.+|..++.+......|++-+||++|||+....+|=||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999987766666678889999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDI 690 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 690 (784)
.|||||+||||||+.|+||+||.+.|.+||++|.+++.+..++|++.||+.++|+|||||+++|.+|++.|+|+.
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHhhccccCCCCccccccCcccccHHHHHHHHhhcc
Q 042193 691 ERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
...||++||.+|.+++.
T Consensus 377 --------------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 377 --------------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred --------------------cCeecHHHHHHHHHHHH
Confidence 23699999999998874
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-54 Score=437.03 Aligned_cols=285 Identities=42% Similarity=0.671 Sum_probs=258.1
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
.....|++.|+||.|+.++|+.|++++..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+++..|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 445678999999999999999999999999999999997 6788999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC----CCcEEEEEe
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGA 605 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~----~~~v~vi~a 605 (784)
+.++|-|+||+.+|.+|+.|+..+|++|||||||+|..+|+.+ +..++++|+.++||.+|||+.. .+.|+|+||
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999999876 4467899999999999999864 245999999
Q ss_pred cCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 606 TNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 606 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
||.||.||+|++| ||.+.||+|+|+.++|..+++..++..+++++++++.||+.++||||+||.++|++|++.++|+.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 042193 686 IEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQ 747 (784)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~ 747 (784)
+......+..... . ..-..+|+.+||++|+++++||++..++.+||+|.++|++
T Consensus 437 i~g~~~~ei~~la------k--E~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 437 IAGLTPREIRQLA------K--EEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhcCCcHHhhhhh------h--hccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 6543211111000 0 0011479999999999999999999999999999999975
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-50 Score=407.12 Aligned_cols=246 Identities=52% Similarity=0.864 Sum_probs=229.8
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||+++|+++|+|.+++|+.+|++|+.+|+.||+|||||||||||||.||+++|++.++.|+.+.|++++.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHH---HHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVE---RRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+....++.+|+-|+.+.|||+||||||++..+|......-+ +|..-+|++.|||+..+.+|-||+|||+++.+
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 999999999999999999999999999999999998865533333 34455788899999999999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
||||.||||||+.|+||.|+.+.|.+||++|+++|.+..++|++.++..++|++|+|+.++|.+|++.++++..
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R------ 377 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR------ 377 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cchhhHhhhhcccccchhhhhhcccC
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++++||.+|.+.+
T Consensus 378 -----------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 -----------DEVTMEDFLKAVEKV 392 (406)
T ss_pred -----------CeecHHHHHHHHHHH
Confidence 347888998887754
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-49 Score=388.64 Aligned_cols=294 Identities=36% Similarity=0.645 Sum_probs=261.2
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
.+.+.|++.|+|+.|++.+|+.|++++..|++.|++|.. +..|.+|+|||||||||||.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456889999999999999999999999999999999997 7888999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-CCCcEEEEEecCC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNR 608 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vi~aTn~ 608 (784)
|+++|.|++|+.++.+|+.||.+.|+||||||||++++.|+.. .+.+.+|+..+||.+|.|.. +..+++|+||||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999988753 35678999999999999985 4578999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 609 PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 609 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
||.||.|+.| ||++.||+|+|+..+|...|+.++...+.. .+.|+..|++.|+||||+||.-+++.|.+..+|..-.
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 999999999999999999999999776533 4568999999999999999999999999999998877
Q ss_pred HHHHHHhhccccCC------------CCccccc---------cCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 042193 688 KDIERERSGKRKRE------------NPEAMEV---------DDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQ 746 (784)
Q Consensus 688 ~~~~~~~~~~~~~~------------~~~~~~~---------~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 746 (784)
+.+.....+..+.. .+.++.. -..++||+.||..++..++|++++.++...++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 76655444422111 1111110 12458999999999999999999999999999999999
Q ss_pred hcc
Q 042193 747 QSR 749 (784)
Q Consensus 747 ~~~ 749 (784)
++|
T Consensus 437 qEg 439 (439)
T KOG0739|consen 437 QEG 439 (439)
T ss_pred cCC
Confidence 875
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-47 Score=367.91 Aligned_cols=249 Identities=44% Similarity=0.752 Sum_probs=237.3
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
+.|+++|.|+||++-.|+.+++.++.|+.+.++++.+|+.||+|+|+|||||||||+|++++|+.....||.|.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|.|+..+.++.+|..|+..+|+||||||||+++.+|-.....+.....|++-+||++|||+....+|-||++||+.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999997655555667788999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
|||++||||+|+.|+||+||..+++-+|.....++++++++|++.+..+.+..||+||.++|++|++.|++++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
.-.|...||++|.+..
T Consensus 381 ------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------------ceeeeHHHHHHHHHhh
Confidence 2368899999998875
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-47 Score=366.63 Aligned_cols=260 Identities=41% Similarity=0.722 Sum_probs=244.0
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
..+|+.+|+-+||++...+.+++.+..|.++|++|+.+|+..|+|+|||||||||||.||+++|+...+.|+.++++++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC
Q 042193 532 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV 611 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ 611 (784)
.+|+|+..+.++++|-.|+..+|+|||.||||++...|..+++..+....|.+-+||+++||++..+++-||+|||+.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999999876555555677888899999999999999999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 612 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 612 ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 691 (784)
||||++||||+|+.|+||+|+.++|.+||+.+.+++++...+++..+|+...|.||+++..+|.+|++.|+++.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHH
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIR 736 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~ 736 (784)
...||++||+-|..++-...++..+.
T Consensus 373 -------------------rvhvtqedfemav~kvm~k~~e~nms 398 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQKDSEKNMS 398 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHhccccccch
Confidence 13599999999999986666665444
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-46 Score=398.48 Aligned_cols=267 Identities=42% Similarity=0.760 Sum_probs=245.7
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
.+++++|+||||+++...++..++.+|.++|++|+.+|+..|.|||||||||||||.||+++|++.+.+|+.|.|+++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHH
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPA 339 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~a 339 (784)
+|+|+++..++.+|+.|+.+.|||||+||+|+|++.|+........|+++||++.|||+..+.+|.|||+||+|+.+||+
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHhcCCcceEEEeCCCCHHHHHHHHHHHHc--CCCcccchhhhHHHHhcC--CCcHHHHHHHHHHHHHHHHHhhcccccc
Q 042193 340 LRRFGRFDREIDIGVPDEVGRLEVFRIHTK--NMKLAEDVDLERVARDTH--GYVGADLAALCTEAALQCIREKMDVIDL 415 (784)
Q Consensus 340 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~~~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 415 (784)
+.|||||++.++++.|+..+|.+||+.+++ +.++.+++|+++|+..+. ||+|+|+..||++|.+.++++....++.
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~ 743 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS 743 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999 678899999999999887 9999999999999999999887654443
Q ss_pred ccchhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 416 EDETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
......... ....++..||+.|++.+.|+..
T Consensus 744 ~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 744 SEDDVTVRS-STIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred cCcccceee-eeeeecHHHHHHHHHhcCCCcc
Confidence 332221111 1345778899999999988753
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-46 Score=395.79 Aligned_cols=244 Identities=41% Similarity=0.711 Sum_probs=230.4
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
..+++|+|+-|.+++|++|.+.+.+ +++|..|.++|-+.|+|+||+||||||||+||+|+|++.+.||+...++++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 4578999999999999999999887 789999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
|+|...++||.+|+.|+..+||||||||||++.++|.... ....+..+||||.+|||+..+.+|+||||||.|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999997642 2278899999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERE 693 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 693 (784)
+||.||||||++|.+|.||...|.+||+.++++.+++.++|...||+-|.||||+||.|+++.|+..|..++
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-------- 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-------- 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 694 RSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
...|+++|++-|-.++
T Consensus 526 -----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------------cccccHHHHhhhhhhe
Confidence 2358899999887765
No 16
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-46 Score=403.36 Aligned_cols=251 Identities=48% Similarity=0.838 Sum_probs=239.4
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.++++|+||||+++.+.+|++.+.+|++||+.|..+|+.+++|||||||||||||++|+++|++.+.+|+.|.|++++++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
|+|+++..++.+|+.|+...|||+|+||||+++..|+...+.+.+|++++|++.|||+....+|+|||+||+|+.||+++
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~AL 587 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPAL 587 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHH
Confidence 99999999999999999999999999999999999987777889999999999999999999999999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchh
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETI 420 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~ 420 (784)
.||||||+.|+++.|+.+.|++||+.+++++++.+++|+++++..|+||+|+|+..+|++|++.++++..+
T Consensus 588 lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~--------- 658 (693)
T KOG0730|consen 588 LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE--------- 658 (693)
T ss_pred cCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred hHhhhhcccccchhhhhhcccCCccc
Q 042193 421 DAEVLNSMAVTNEHFRTALEMSNPSA 446 (784)
Q Consensus 421 ~~~~~~~~~v~~~d~~~al~~~~ps~ 446 (784)
...++.+||.++++...++-
T Consensus 659 ------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 659 ------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred ------cccccHHHHHHHHHhhcccC
Confidence 34577889999998876653
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.2e-44 Score=397.34 Aligned_cols=398 Identities=24% Similarity=0.389 Sum_probs=304.9
Q ss_pred CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHH
Q 042193 280 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359 (784)
Q Consensus 280 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 359 (784)
.|.++++.++|.++.+ .. +...|.++........+.+|+.+.+ -.+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~----~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----IS----ISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----hH----HHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 4789999999998832 11 2333333333333444455554432 347888875 55678999999999
Q ss_pred HHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhh
Q 042193 360 RLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTA 438 (784)
Q Consensus 360 R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~a 438 (784)
..++++........ .++.+++.++..+.|++..++..++..+.... ..++ ...+.. + .+.-.+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-----~~~~--~~~~~~-------i-~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-----KTID--ENSIPL-------I-LEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCCC--hhhHHH-------H-HHHHHHH
Confidence 99999877654332 24556889999999999999988876543210 0010 000000 0 0000011
Q ss_pred cccCCcccccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh
Q 042193 439 LEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 439 l~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 518 (784)
+. .... .....+..+|+++||++.+|+.+.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~---~~~~--le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 IS---QTEI--LEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hh---hhcc--ccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 11 0100 01113567899999999999998764332 2334567799999999999999999999999999999
Q ss_pred CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCC
Q 042193 519 QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKK 598 (784)
Q Consensus 519 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 598 (784)
+.+++.++++.+.++|+|+++++++.+|+.|+...||||||||||.++..+... ..++...+++++|++.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2345678999999999985 346
Q ss_pred cEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC--CCccCHHHHHHHcCCCCHHHHHHHHHH
Q 042193 599 TVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI--SPDVDLSALARYTHGFSGADITEICQR 676 (784)
Q Consensus 599 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~la~~~~g~sg~di~~l~~~ 676 (784)
+++||||||+++.|||+++||||||++++|++|+.++|.+||+.++++... ..+.++..+|+.|+||||+||.++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999988643 247889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCC--CCHHHHHHHHHHHHH
Q 042193 677 ACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS--VSDADIRKYQLFAQT 744 (784)
Q Consensus 677 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s--~~~~~~~~~~~~~~~ 744 (784)
|+..|..+. ..++.+||..|++.+.|+ ...++++.+++|...
T Consensus 440 A~~~A~~~~--------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 440 AMYIAFYEK--------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHcC--------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 998887543 358999999999999997 578899999999875
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=357.14 Aligned_cols=250 Identities=42% Similarity=0.722 Sum_probs=236.5
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
+.|.-.|+||||++...+.|.+++..|+.+++.|.++|+.||+|+|+|||||||||++|++.|...+..|+.+-++.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|+|+..+.+|..|..|+...|+||||||+|++..+|..+.........|.+-+||+++||+.+...+-||++||+.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997765555556778888999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
||||+|.||+|+.|+||.|+.+.|..|++++.+++++.+++.+++||+.|++|+|++.+++|-+|++.|+++.
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------- 396 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------- 396 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHHhhcc
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
...|+.+||.+++..++
T Consensus 397 ------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ------------------cccccHHHHHHHHHHHH
Confidence 23589999999987763
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-45 Score=355.30 Aligned_cols=258 Identities=39% Similarity=0.701 Sum_probs=239.1
Q ss_pred cccccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEE
Q 042193 444 PSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFV 523 (784)
Q Consensus 444 ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i 523 (784)
|+..--...+.|+++|.|+||..+..+.|++.++.|+.+|+.|..+|+.||+|+|+|||||||||.+|+++|+..+..||
T Consensus 161 psvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfi 240 (435)
T KOG0729|consen 161 PSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFI 240 (435)
T ss_pred CceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEE
Confidence 44333345678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 524 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 524 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
.|-++++..+|+|+..+.++++|+.|+....|+|||||||++.+.|-..+........|.+-+|+++|||+....++-|+
T Consensus 241 rvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 241 RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred eehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999986654444556677888899999999999999999
Q ss_pred EecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 604 GATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 604 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
++||+|+.|||||+||||+|+.++|.+||.+.|.+||+.+.+.+.+..++.++.||+++.+-+|++|+.+|.+|.+.|++
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 684 ENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
..- ...|..||.+|..++
T Consensus 401 arr-------------------------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 401 ARR-------------------------KVATEKDFLDAVNKV 418 (435)
T ss_pred HHh-------------------------hhhhHHHHHHHHHHH
Confidence 652 247899999998876
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=361.70 Aligned_cols=249 Identities=41% Similarity=0.724 Sum_probs=233.5
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
..|.-+|.||||++...+.+.+.++.|+.||+.+..+|++||+|++|||+||||||.||+|+|+.....|+.+-++++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|.|+..+.+|++|+-|...+|+|+||||||++..+|-.+.+.......|.+-+||+++||+.....|-||+|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999996554433445566777999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
||||+||||+|+.|.||.||..+++.||.++..++.+..++.++.+....+.+||+||.++|.+|.+.|+|+..
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999862
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
-.|+++||..|.+++
T Consensus 412 -------------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 -------------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred -------------------hhccHHHHHHHHHHH
Confidence 259999999998876
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-43 Score=359.32 Aligned_cols=288 Identities=36% Similarity=0.611 Sum_probs=246.2
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcc-cCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFG-LSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
-.++|+||||++.+++.|++.+.+|+.+|+.|...+ +.+++|+|||||||||||++|+++|.+.+.+|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 468999999999999999999999999999997544 5688999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCC--cEEEEEecCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKK--TVFIIGATNRPDV 611 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~--~v~vi~aTn~~~~ 611 (784)
|+|++++.++.+|..|.+..||||||||+|++++.|+. ...++...+-++|+...||+..+. +|+|+||||||..
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc---chHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 99999999999999999999999999999999999943 335678889999999999997655 4999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH--
Q 042193 612 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKD-- 689 (784)
Q Consensus 612 ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~-- 689 (784)
||.|++| |+.+.+++++|+..+|.+||+..+++..+++++|+..+|..|+||||+||.++|+.|+..++++.+...
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -HHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHH--HHHHHHHHHHHHhh
Q 042193 690 -IERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDA--DIRKYQLFAQTLQQ 747 (784)
Q Consensus 690 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~--~~~~~~~~~~~~~~ 747 (784)
.............+.+...-..++++++||..|+..+.++++.+ .....+.|.+.+++
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 00000000000111111111246899999999999988886543 34455667776654
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-43 Score=391.39 Aligned_cols=249 Identities=44% Similarity=0.774 Sum_probs=231.0
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
...+.|.|+.|.+++|+.|.+.+.+ +++|+.|.++|..+|+|+||+||||||||+||||+|++.+.||+.++++++..+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3468999999999999999999886 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcC-CCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-ASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~-~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
++|....+++.+|+.|+..+|||+|+||||++...|+ ...+..+...+..+||||.+|||+.....|+|+|+||+|+.|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 9999999999999999999999999999999999994 222234556778999999999999988999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 691 (784)
|+|++||||||+.|++++|+...|.+||+.|+++.+++ +++++..+|.+|.||+|+||.++|++|+..|.++..
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~----- 538 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL----- 538 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc-----
Confidence 99999999999999999999999999999999999985 778899999999999999999999999999999762
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhccC
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR 728 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 728 (784)
..|+..||+.|++.+..
T Consensus 539 --------------------~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 539 --------------------REIGTKDLEYAIERVIA 555 (774)
T ss_pred --------------------CccchhhHHHHHHHHhc
Confidence 35899999999995533
No 23
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-42 Score=378.37 Aligned_cols=269 Identities=43% Similarity=0.739 Sum_probs=240.8
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
.+.+++.|+||||+++.+..|.+.+.+|++||++|.+ |+.+..|||||||||||||.+|+++|.++...|+.|.|+++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 3578899999999999999999999999999999976 888899999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC--chHHHHHHHHHHHHHhhccc--cCCcEEEEEEcCCCC
Q 042193 259 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--NGEVERRIVSQLLTLMDGLK--SRAHVVVMGATNRPN 334 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~--~~~~vivI~atn~~~ 334 (784)
+.|+|++|+++|.+|+.|+...|||||+||+|+++|+|+.. .+.+-+|+++||+..||++. ....|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999754 46788999999999999998 456899999999999
Q ss_pred CCCHHHHhcCCcceEEEeCCCC-HHHHHHHHHHHHcCCCcccchhhhHHHHhcC-CCcHHHHHHHHHHHHHHHHHhhccc
Q 042193 335 SIDPALRRFGRFDREIDIGVPD-EVGRLEVFRIHTKNMKLAEDVDLERVARDTH-GYVGADLAALCTEAALQCIREKMDV 412 (784)
Q Consensus 335 ~ld~al~r~~rf~~~i~i~~p~-~~~R~~il~~~~~~~~~~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 412 (784)
.+||+|.||||||+-++++++. .+.+..+|+..++++.+.+++++.++|+.++ .|+|+|+.++|..|.+.++++....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 5678899999999999999999999999875 7999999999999999999987665
Q ss_pred cccccchhhHhhhhcccccchhhhhhcccCCccccc
Q 042193 413 IDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALR 448 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 448 (784)
++...............++++||.++.+.+.|+...
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 443211111122346778999999999999887543
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=376.38 Aligned_cols=253 Identities=44% Similarity=0.735 Sum_probs=234.5
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
.+.|+++|+||||++.+++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC
Q 042193 532 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV 611 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ 611 (784)
.+|+|++++.++.+|..|+...||||||||||.++..|............+++.+||+.||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999887543222233466889999999999888889999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 612 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 612 ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 691 (784)
||||++||||||..|+||+|+.++|..||+.+++++++..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhccCC
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS 729 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 729 (784)
...|+.+||++|++.+...
T Consensus 371 -------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 -------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -------------------CCccCHHHHHHHHHHHHhc
Confidence 1369999999999997554
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.8e-42 Score=331.79 Aligned_cols=245 Identities=38% Similarity=0.687 Sum_probs=221.6
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
..++++++|+.|++++|+..+-.+.| +++|+.|.+ ..|+++|||||||||||++|+++|++.+.|++.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 45788999999999999987666555 677877755 67889999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
.|+|+..++|+++|+.|++.+|||+||||+|+++-.|... +-.+....++|.||++|||+..+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 9999999999999999999999999999999999887653 33566788999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITE-ICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~-l~~~a~~~a~~~~~~~~~~ 691 (784)
|||+.+ ||...|.|.+|+.++|..|++.+++++|+.-+.++..+++.|.|+||+||.. +++.|...|+.++-
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~----- 340 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR----- 340 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----
Confidence 999998 9999999999999999999999999999999999999999999999999987 77777788887652
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhccCCC
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSV 730 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 730 (784)
..|+.+|++.|+++.++.-
T Consensus 341 --------------------e~v~~edie~al~k~r~~r 359 (368)
T COG1223 341 --------------------EKVEREDIEKALKKERKRR 359 (368)
T ss_pred --------------------hhhhHHHHHHHHHhhcccc
Confidence 2589999999999865543
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=374.61 Aligned_cols=247 Identities=44% Similarity=0.798 Sum_probs=233.4
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
..+++|.|+.|.+++|+.+.+.+.+ +++|..|..+|...|+|++|+||||||||+||+++|++.+.||+.++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4678999999999999999999875 788999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
|+|...+.+|.+|.+|++++|||+||||||++...|+...+.....-+..+||||.+|||+..+..|+||++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999986655445556679999999999999889999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERE 693 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 693 (784)
|||+||||||+.|.++.||...|.+|++.++++.+++.++++..+|+.|.||+|+|+.+++++|+..|.+++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 694 RSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
...|++.||++|..++
T Consensus 375 -----------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred -----------------CeeEeccchHHHHHHH
Confidence 2469999999999886
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.7e-40 Score=364.77 Aligned_cols=258 Identities=48% Similarity=0.814 Sum_probs=237.4
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
..+.|++.|++|+|++..++.+.+.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 610 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~ 610 (784)
.++|+|++++.++.+|+.++...||||||||||.++..|+...........+.+.+++.+++++....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988765433323345677888999999988888999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDI 690 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 690 (784)
.||++++||||||..|+||+|+.++|.+||+.++++.++..++++..+|+.|+||||+||.++|++|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999888999999999999999999999999999998864
Q ss_pred HHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHH
Q 042193 691 ERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDA 733 (784)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~ 733 (784)
...|+.+||.+|++.++++...+
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 23599999999999998876544
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=358.81 Aligned_cols=249 Identities=41% Similarity=0.722 Sum_probs=230.7
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
+.|..+|+||+|++..++.+.+.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|+|+.++.++.+|+.|+...||||||||||.++..|............+.+.+||+.||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998876432222234567788999999998877889999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
|++++||||||+.|+||+|+.++|.+||+.+++++.+..++++..++..++||||+||.++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
...|+.+||.+|+.++
T Consensus 409 ------------------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 ------------------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ------------------CCccCHHHHHHHHHHH
Confidence 2359999999999886
No 29
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-39 Score=311.71 Aligned_cols=244 Identities=45% Similarity=0.754 Sum_probs=224.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
-++++|.||||++-+++++++.+++|+.+.++++.+|+.||+|||+|||||||||+|++++|+.....|+.+.|+++..+
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHH---HHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVE---RRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
|.|+....++.+|.-|+.+.|+|+||||+|+++.++-......+ .+++-.|++.||++.+..+|-||.+||+.+.+|
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtld 308 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLD 308 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccC
Confidence 99999999999999999999999999999999988755433333 456667888999999999999999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
|+|.||||+++.|+||.|+..+++-++...+.+|.+.+++|++.+..+.+..+++|+.++|++|++.+.++..
T Consensus 309 pallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr------- 381 (408)
T KOG0727|consen 309 PALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR------- 381 (408)
T ss_pred HhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred chhhHhhhhcccccchhhhhhccc
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEM 441 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~ 441 (784)
..+...||+++.+.
T Consensus 382 ----------yvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 382 ----------YVVLQKDFEKAYKT 395 (408)
T ss_pred ----------eeeeHHHHHHHHHh
Confidence 34566677766553
No 30
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=308.24 Aligned_cols=302 Identities=35% Similarity=0.592 Sum_probs=256.5
Q ss_pred hhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeCCCceEEEcCCCCccchhhhhcCCCCccccc
Q 042193 111 GSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEEERLNEVGYDDVG 190 (784)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (784)
.++|+.|-++.|.+ ..++.|+.+.-.+......|+|+++.|.+.+++++.|.+.. ..+.. ...+..++++++|+.
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl-~~~~~--~~~e~~~~it~ddVi 124 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVL-ETPRE--EDREIISDITLDDVI 124 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEe-cCcch--hhhhhhccccHhhhh
Confidence 35888999999974 56899998877666677889999999999888776655543 22221 122467889999999
Q ss_pred ChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHH
Q 042193 191 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 270 (784)
Q Consensus 191 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~ 270 (784)
|+++++...+-++.. +..|+.|..| .|++||+|||||||||++|+++|++...+++.+++.++.+.++|+...+++
T Consensus 125 GqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ih 200 (368)
T COG1223 125 GQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIH 200 (368)
T ss_pred chHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHH
Confidence 999999998776665 7888888876 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEeehhhhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcce
Q 042193 271 KAFEEAEKNAPSIIFIDEIDSIAPKREKT--NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDR 348 (784)
Q Consensus 271 ~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~ 348 (784)
.+++.|....|||+||||+|+++-.|... .+++ ..+++.|++.||++..+..|+.|++||+|+.+|+++|+ ||..
T Consensus 201 ely~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEe 277 (368)
T COG1223 201 ELYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEE 277 (368)
T ss_pred HHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhh
Confidence 99999999999999999999998777543 2223 45789999999999999999999999999999999998 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHH-HHHHHHHHHHhhccccccccchhhHhhhhc
Q 042193 349 EIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAAL-CTEAALQCIREKMDVIDLEDETIDAEVLNS 427 (784)
Q Consensus 349 ~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (784)
+|+|..|+.++|.+|++.+.+.+++.-+.+++.++..|.|++|+||..- ++.|..+++.+..
T Consensus 278 EIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~----------------- 340 (368)
T COG1223 278 EIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR----------------- 340 (368)
T ss_pred eeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----------------
Confidence 9999999999999999999999999999999999999999999998754 4555556665432
Q ss_pred ccccchhhhhhccc
Q 042193 428 MAVTNEHFRTALEM 441 (784)
Q Consensus 428 ~~v~~~d~~~al~~ 441 (784)
..+..+|+..|+..
T Consensus 341 e~v~~edie~al~k 354 (368)
T COG1223 341 EKVEREDIEKALKK 354 (368)
T ss_pred hhhhHHHHHHHHHh
Confidence 33566777777764
No 31
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-39 Score=311.19 Aligned_cols=245 Identities=43% Similarity=0.795 Sum_probs=224.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
+..++-+|+-|||+++++++|++.+++|.+||++|+.+|+..|+|+|||||||||||.||+++|....+.|+.++|+++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch----HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC
Q 042193 259 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG----EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN 334 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~----~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~ 334 (784)
.+|.|+....++.+|--|+.+.|+|+|+||||++...+....+ ++. |..-.|++.+|++....++-||.+||+.+
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevq-rtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQ-RTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHH-HHHHHHHHhccccccccceEEEEeccccc
Confidence 9999999999999999999999999999999999987754332 233 33445778899999999999999999999
Q ss_pred CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccc
Q 042193 335 SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVID 414 (784)
Q Consensus 335 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 414 (784)
.+||++.|+||+++.|+||+|+++.|.+||++|.+++.+....++..+|+...|-+|+++..+|.+|++.+++++
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----- 372 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cccchhhHhhhhcccccchhhhhhccc
Q 042193 415 LEDETIDAEVLNSMAVTNEHFRTALEM 441 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~d~~~al~~ 441 (784)
...++++||+-|...
T Consensus 373 ------------rvhvtqedfemav~k 387 (404)
T KOG0728|consen 373 ------------RVHVTQEDFEMAVAK 387 (404)
T ss_pred ------------hccccHHHHHHHHHH
Confidence 356788888776554
No 32
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-40 Score=348.28 Aligned_cols=281 Identities=38% Similarity=0.642 Sum_probs=249.8
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
.....+++.|+|++|++.+|+.+.+.+.||...+++|.. -..+.+|+||.||||+|||+|++|+|.+++..|+.+++++
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g-lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG-LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhc-cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHH
Confidence 344567799999999999999999999999999999986 3456789999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC--CCcEEEEEecC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA--KKTVFIIGATN 607 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vi~aTn 607 (784)
+.++|+|++++.++.+|+-|+...|+|+|+||||+++..|.. .+.....++..++|.++++... .++|+||||||
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 999999999999999999999999999999999999999943 3456788999999999998754 56899999999
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC-CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 608 RPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI-SPDVDLSALARYTHGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 608 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
+||.+|.|++| ||.+++|+|+|+.++|..+|+.++++.+. ..+.++..|++.|+||||.||.++|++|++..++...
T Consensus 299 ~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 299 RPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELG 376 (428)
T ss_pred CchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcc
Confidence 99999999999 99999999999999999999999988743 3456899999999999999999999999998887653
Q ss_pred HHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 042193 687 EKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQS 748 (784)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~ 748 (784)
... ....+..+..+.|+..||+.+++.++|+++.+.++.|++|..+|+..
T Consensus 377 ~~~------------~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 377 GTT------------DLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred cch------------hhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 320 11223344567899999999999999999999999999999999754
No 33
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-40 Score=321.14 Aligned_cols=246 Identities=48% Similarity=0.795 Sum_probs=226.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..+..+|.||||++.|+++|++.+++|+.||+.++.+|+.||+||+|||+||||||.||+++|+...+.|+.+-|+++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHH---HHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVS---QLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~---~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+....++.+|+-|..+.|+|+||||||++..+|....+.-++.+.. .|++.+|++.++..|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999887655544444443 567778999999999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
||+|.||||+++.|+|+.|++..+..|+.+|+.+|.+..+++++.+....+.++|+||.++|.+|.+.+++...
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cchhhHhhhhcccccchhhhhhcccC
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
+.++.+||.++.+.+
T Consensus 412 -----------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 -----------MKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------hhccHHHHHHHHHHH
Confidence 457788888776543
No 34
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-39 Score=309.69 Aligned_cols=259 Identities=39% Similarity=0.717 Sum_probs=226.6
Q ss_pred cCCceEEeCCCceEEEcCCCCccc---hh--hhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEE
Q 042193 152 DPGEYCIVAPDTEIFCEGEPVKRE---DE--EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 226 (784)
Q Consensus 152 ~p~~~~~~~~~t~i~~~~~~~~~~---~~--~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL 226 (784)
.|.+.+-+..++-+.++.-|.... .. -+.-+...|+||||++++++++.+.+.+|+.|++.|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 356666667777665544332110 00 0123456799999999999999999999999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHH
Q 042193 227 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERR 306 (784)
Q Consensus 227 ~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 306 (784)
|||||||||.+||+.|...+..|+.+.|+.++..+.|+..+.++..|+-|....|+|+||||+|.+..+|-.....-++.
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875543222233
Q ss_pred H---HHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHH
Q 042193 307 I---VSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVA 383 (784)
Q Consensus 307 v---~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la 383 (784)
+ .-.|++.+|++.+...|-||++||+.+-+||+|.|.||+++.|+||.|+++.|..|+++|.++|.+.+++++++++
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 3 3456788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 042193 384 RDTHGYVGADLAALCTEAALQCIREKM 410 (784)
Q Consensus 384 ~~t~g~~~~dl~~l~~~a~~~~~~~~~ 410 (784)
+.|++|+|+...++|.+|+|.++++..
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhccc
Confidence 999999999999999999999998753
No 35
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=325.67 Aligned_cols=263 Identities=41% Similarity=0.663 Sum_probs=234.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.+.|+||.|+.++++-|.|++-+|+.+|+.|+.+ ..|=++||++||||||||+||+++|.+.+..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 456899999999999999999999999999999964 3566899999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc-hHHHHHHHHHHHHHhhccccC----CcEEEEEEcCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN-GEVERRIVSQLLTLMDGLKSR----AHVVVMGATNRPNS 335 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~----~~vivI~atn~~~~ 335 (784)
|.|++++.++.+|+-|+...|++|||||||+||.+|+... .+..+|+.+.|+-+||++... ..|+|+++||-|++
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 9999999999999999999999999999999999987654 456789999999999998653 24889999999999
Q ss_pred CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccc
Q 042193 336 IDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL 415 (784)
Q Consensus 336 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 415 (784)
||++++| ||.+.|+++.|+.+.|..+++..++...+.++++++.+++.++||+|+||..+|++|.+..+++....+.-
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999976654332
Q ss_pred ccc-hhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 416 EDE-TIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 416 ~~~-~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
.+. .+..+... ..++..||..|+..++|+..
T Consensus 443 ~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 443 REIRQLAKEEPK-MPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhhhhhhhccc-cccchhhHHHHHHHcCcCCC
Confidence 221 12222222 56899999999999988864
No 36
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-39 Score=337.81 Aligned_cols=228 Identities=43% Similarity=0.742 Sum_probs=218.5
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
...+++|+|+-|++++++++.|++++ ++.|+.|..+|-.-|+||||+||||||||+|||++|++.+.+|++..|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34567899999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHH
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPA 339 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~a 339 (784)
.++|....+++.+|+.|+...||||||||||++..+|........+..++||+..||++.++..|+|||+||.|+.+|++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999998776667888999999999999999999999999999999999
Q ss_pred HHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 340 LRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 340 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
|.||||||++|.++.||...|.+||..|+.+..+..++|+.-||+.|.||+|+|+.++++.|+..+...
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999877654
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=364.92 Aligned_cols=444 Identities=35% Similarity=0.534 Sum_probs=327.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEechh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE 256 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~~~v~~~~ 256 (784)
..++|++|||++..+.++++++.+|+.||+.|.++++.|++|||++||||||||..|+++|..+.. .++.-.|.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 457899999999999999999999999999999999999999999999999999999999988742 355667899
Q ss_pred hhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 257 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 257 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
..++|+|+.+..++.+|++|+..+|+|+|+||||-+++.+..........++..|+.+|+++..++.|+||||||+|+.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL 415 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 415 (784)
||++||+|||+++++++.|+.+.|.+|+.+|+++..-. ....+..++..+.||.|+|+.+||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999999887632 34457899999999999999999999999999887665443
Q ss_pred ccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcc-ccc-ccchhhhhhhhcccc-------------cccc
Q 042193 416 EDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVS-WED-IGGLETVKRELQETV-------------QYPV 480 (784)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~-~~~-i~g~~~~k~~l~~~i-------------~~~~ 480 (784)
....... ..+...+...+|..|+....|+..+........+. .-- +.+.......++..+ .+-+
T Consensus 500 s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred ccccccc-cchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 3222221 12334478889999999888877664322211111 000 110111111111111 1100
Q ss_pred CChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-CCcEEEEecccchhcc-cCcchHHHHHHHHHhhhCCCeEEE
Q 042193 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFVSVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 558 (784)
Q Consensus 481 ~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~vl~ 558 (784)
...+..-...+--...+++.|..|.|-+.+..++-+.+ +.+......+.+++.- .+..+..|..+|-.|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000001111122338899999999999999998876 4566555555555544 566788899999999999999999
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQ 638 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~ 638 (784)
|-.+|.+..... ..++..|+..++.......+..+-+-+.-+.-.+. .+..+..|..+.+..
T Consensus 659 ip~~d~w~~~~p----------~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~~--------~~~t~~~p~~~s~~~ 720 (1080)
T KOG0732|consen 659 IPNVDEWARVIP----------VSFLEEFLSSLDEKALSTPILELHTWDTSFESVNK--------SVVTLSKPSAESTGA 720 (1080)
T ss_pred ccchhhhhhcCc----------chhhhcchhcchhhhhccchhhhccccccccccCc--------cccccccchhhhhHH
Confidence 999999876432 23445555555433222222222221111000010 233555677777776
Q ss_pred HHHHHh
Q 042193 639 IFKACL 644 (784)
Q Consensus 639 il~~~~ 644 (784)
.|+..+
T Consensus 721 ff~r~I 726 (1080)
T KOG0732|consen 721 FFKRLI 726 (1080)
T ss_pred HHHHHH
Confidence 666555
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-39 Score=339.63 Aligned_cols=277 Identities=38% Similarity=0.663 Sum_probs=234.7
Q ss_pred ccCCccccc--ccchhhhh-hhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC-cEEEEecc
Q 042193 453 EVPNVSWED--IGGLETVK-RELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFVSVKGP 528 (784)
Q Consensus 453 ~~~~~~~~~--i~g~~~~k-~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-~~i~v~~~ 528 (784)
-.|+..|++ |||++.-- ...+.++....-.|+..+++|.+.-+|+|||||||||||.+|+.+...++. .--.|+|+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 346666766 67887543 334555555556688999999999999999999999999999999999874 33458999
Q ss_pred cchhcccCcchHHHHHHHHHhhh--------CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcE
Q 042193 529 ELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTV 600 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~--------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 600 (784)
+++++|+|++|.++|.+|..|.. +.--||+|||||+++.+||+..+ ..++++.++||||.-|||.....++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998853 23459999999999999997754 4678999999999999999999999
Q ss_pred EEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----CCCCccCHHHHHHHcCCCCHHHHHHHHHH
Q 042193 601 FIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PISPDVDLSALARYTHGFSGADITEICQR 676 (784)
Q Consensus 601 ~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~g~sg~di~~l~~~ 676 (784)
+|||-|||++.||+||||||||...+++.+||+..|.+|++++.+++ .++.++|+.+||.+|.+||||+|+.+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 47789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCC--CCHHHHHHHHH
Q 042193 677 ACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS--VSDADIRKYQL 740 (784)
Q Consensus 677 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s--~~~~~~~~~~~ 740 (784)
|.-.|+.+.+..... ..-++.+ .+.-.|+++||..||..++|. ++++++++|..
T Consensus 451 A~S~A~nR~vk~~~~-------~~~~~~~---~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGK-------VEVDPVA---IENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhhhccCcc-------eecCchh---hhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 999999988765311 1111111 123479999999999999996 78999988764
No 39
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=318.94 Aligned_cols=247 Identities=40% Similarity=0.729 Sum_probs=227.9
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMW 534 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 534 (784)
.+++|+.++|+..+...+++.+..|+.++++|..+|+++|+|++||||||+|||.+|+++|...+.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCc
Q 042193 535 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDP 614 (784)
Q Consensus 535 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~ 614 (784)
+|++.+.||+.|..|+...|||||+||||+++++|.......+....+.+-+|+++||+.....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998554444445566778888999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042193 615 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERER 694 (784)
Q Consensus 615 allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 694 (784)
+|+||||+|+.+.+|+|+...|..|++.+..........|.+.+.+..+||+|+|+.+.|++|.+.|+++.-.
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~------- 359 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD------- 359 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH-------
Confidence 9999999999999999999999999999998888888889999999999999999999999999999886521
Q ss_pred hccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 695 SGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
.+-.++|..+..+.
T Consensus 360 ------------------~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 360 ------------------EVLHEDFMKLVRKQ 373 (388)
T ss_pred ------------------HHhHHHHHHHHHHH
Confidence 35688888887665
No 40
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-38 Score=339.11 Aligned_cols=229 Identities=42% Similarity=0.717 Sum_probs=221.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhc
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 262 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~ 262 (784)
.++|+||||+.++++-+.+.+.+|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..++.|.|+++.++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHh
Q 042193 263 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRR 342 (784)
Q Consensus 263 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r 342 (784)
|.+++.+|.+|..|....|||+|+||+|+++|+|+.+...+.+|+++||++.|||...-.+|.|+|+|.+|+.+||||.|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 042193 343 FGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMD 411 (784)
Q Consensus 343 ~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 411 (784)
|||+++.++.+.|++.+|++|++.+...+.+..++|++.+|..|+||+|+|+..++..|-+.+..+...
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888776543
No 41
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-38 Score=304.94 Aligned_cols=230 Identities=46% Similarity=0.808 Sum_probs=213.7
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
.-++++|.|+||++++++++++.+++|+.||+.|-.+|+.||+|||+|||||||||.+||++|+..++.|+.+-|++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC----chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT----NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS 335 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ 335 (784)
+|+|+....++.+|+-|+....|++|+||||++...+-.. .+++.+ ..-.|++.+|++..++++-|+.+||+|+.
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqr-tmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQR-TMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHH-HHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 9999999999999999999999999999999998876433 233333 33456778899999999999999999999
Q ss_pred CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 042193 336 IDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKM 410 (784)
Q Consensus 336 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 410 (784)
+||+|.||||+++.++|..|+.+.|..|+++|.+.|.+..+..++-++..+.+-+|+++.++|.+|.|.+++...
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987643
No 42
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.4e-37 Score=353.73 Aligned_cols=250 Identities=45% Similarity=0.806 Sum_probs=228.1
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
.+.++++|+|++|++++|+.+.+.+.+ +.+++.+..+|..+++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 346789999999999999999998876 7888999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC
Q 042193 532 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV 611 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ 611 (784)
+.|+|.+++.++.+|+.++...||||||||||.+...|+...........+++++||.+||++....+++||+|||+|+.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999999999999999999999999999999999887653222233456899999999999988889999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 612 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 612 ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 691 (784)
|||+++||||||+.|++++|+.++|.+||+.+++..++..+.++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------ 279 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------ 279 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999998888788899999999999999999999999998887653
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhcc
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
...|+.+||++|+..+.
T Consensus 280 -------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 -------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred -------------------CCCCCHHHHHHHHHHHh
Confidence 23699999999999764
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=7.7e-37 Score=335.12 Aligned_cols=250 Identities=50% Similarity=0.845 Sum_probs=229.2
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
.+.|.+.|++++|++..++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.+.++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC
Q 042193 532 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV 611 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ 611 (784)
.+|+|+....++.+|+.++...|+||||||+|.+...|.....+......+.+.+++.+++++....+++||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877543322233456778889999998877778999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 612 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 612 ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 691 (784)
+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999888888899999999999999999999999999998864
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
...|+.+||.+|++.+
T Consensus 348 -------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 44
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=8.7e-37 Score=338.45 Aligned_cols=251 Identities=43% Similarity=0.759 Sum_probs=212.0
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC----------c
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA----------N 521 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------~ 521 (784)
.+.|+++|++|||++..++.+++.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++. .
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456889999999999999999999999999999999999999999999999999999999999999754 3
Q ss_pred EEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCC
Q 042193 522 FVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAK 597 (784)
Q Consensus 522 ~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 597 (784)
|+.++++++.++|+|++++.++.+|+.++.. .||||||||+|+++..|+... ++....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 7788899999999999999999999998864 699999999999998886431 2234567899999999999888
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-CCCCC---------ccCHHHHHHH------
Q 042193 598 KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-SPISP---------DVDLSALARY------ 661 (784)
Q Consensus 598 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~-~~~~~---------~~~~~~la~~------ 661 (784)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++.. ..++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34411 1122222221
Q ss_pred -----------------------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHH
Q 042193 662 -----------------------THGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAH 718 (784)
Q Consensus 662 -----------------------~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 718 (784)
++.+||++|.++|..|...|+++.+... ...|+.+|
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------~~~~~~~~ 470 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------QVGLRIEH 470 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------------CcCcCHHH
Confidence 4558888888888888888888775321 13588999
Q ss_pred HHHHHhh
Q 042193 719 FEESMKY 725 (784)
Q Consensus 719 ~~~al~~ 725 (784)
+..|+..
T Consensus 471 l~~a~~~ 477 (512)
T TIGR03689 471 LLAAVLD 477 (512)
T ss_pred HHHHHHH
Confidence 9988875
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.4e-36 Score=344.11 Aligned_cols=247 Identities=44% Similarity=0.783 Sum_probs=225.9
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
...++|+|++|++++++.+.+.+.+ ++.++.|..+|..+++|+||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3468899999999999999998765 678888999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
++|.....++.+|+.|+...||||||||||.+...|+...+........++++||.+||++....+++||+|||+|+.+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 99999999999999999999999999999999988865433334456688999999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERE 693 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 693 (784)
+|++||||||+.|+|++|+.++|.+||+.+++..++..++++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~-------- 407 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK-------- 407 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999999888888899999999999999999999999998887654
Q ss_pred hhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 694 RSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
...|+.+||++|+..+
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 2359999999999876
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=322.08 Aligned_cols=246 Identities=43% Similarity=0.728 Sum_probs=224.1
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++.+++.|++.+.+|+.+|++|+.+|+.+++++||+||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc---hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN---GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
.+.|+.+..++.+|+.+....|+|+||||+|.++.++.... +....+++.+++..++++....++.||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998764322 223346677888889988877889999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
|+++.|+|||+++|+++.|+.++|.+||+.++.++.+..++++..++..|+||+|+|+.++|++|++.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred cchhhHhhhhcccccchhhhhhcccC
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+||..|+..+
T Consensus 372 -----------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 347788888887764
No 47
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-36 Score=295.33 Aligned_cols=228 Identities=40% Similarity=0.702 Sum_probs=210.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
-+++.|+|+.|++.+++.|++.+.+|.++|++|.. +-.|-++||||||||||||.||+++|.+.+..|+.|+.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 36789999999999999999999999999999975 33456799999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCCCCCHH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPNSIDPA 339 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~~ld~a 339 (784)
|.|++++.++.+|+-|+.+.|+||||||||.+|..++...++..+|+...|+-.|.++.. ...|+|+|+||.|+.+|.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999998889999999999999988765 4579999999999999999
Q ss_pred HHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 042193 340 LRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMD 411 (784)
Q Consensus 340 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 411 (784)
+|| ||++.|++|.|+...|..+++.|+...+. ..+.|+.+++..|+||+|+|+..+++.|.|.-+++.+.
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 999 99999999999999999999999877663 35678999999999999999999999999888876543
No 48
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=301.95 Aligned_cols=228 Identities=45% Similarity=0.753 Sum_probs=213.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~-i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
-.++|+||||++..++.+++.+.+|+++|++|...+ ..+++||||+||||||||++|+++|++.+..|+-|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 356899999999999999999999999999996433 4688999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCc--EEEEEEcCCCCCCCH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAH--VVVMGATNRPNSIDP 338 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--vivI~atn~~~~ld~ 338 (784)
|.|+.++.++.+|.-|..-.|+++||||+|+++..|+....+....+.++++...|++..+.+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999777777788888999999999987654 999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMD 411 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 411 (784)
++.| |+.+.++++.|+..+|..||+..++.-.+.+++|+.++|..|.||+|+||..+|..|+...++....
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999988876543
No 49
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=330.28 Aligned_cols=229 Identities=46% Similarity=0.792 Sum_probs=214.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
..++|.|+.|+++++++|.|++.. |++|+.|..+|+..|+|+||+||||||||.||+++|++.+.+|+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCC---C-CchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE---K-TNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
.|....+++.+|+.++...|||+|+||||.+...++ . ..+.-....++||+..||++.....|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999899999999999999999999999999999884 1 233345667899999999999998999999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIREKMD 411 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 411 (784)
++++|||||++.|.+..|+..+|.+|++.|++...+. +++++..++..|+||+|+||..+|.+|+..+.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~ 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC
Confidence 9999999999999999999999999999999999885 7888999999999999999999999999998886543
No 50
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.6e-35 Score=347.02 Aligned_cols=227 Identities=21% Similarity=0.343 Sum_probs=187.6
Q ss_pred ccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcc----------cC------------
Q 042193 479 PVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMW----------FG------------ 536 (784)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~----------~g------------ 536 (784)
|........++|+.+++|+||+||||||||+||+|+|++++.||+.|++++++.+| +|
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566788999999999999999999999999999999999999999998655 12
Q ss_pred -------------------cchH--HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC
Q 042193 537 -------------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN 595 (784)
Q Consensus 537 -------------------~~~~--~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 595 (784)
.++. .++.+|+.|++++||||||||||+++... .....+++||++|++..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 2223 48999999999999999999999997641 11224899999999864
Q ss_pred ---CCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh--ccCCCCCc-cCHHHHHHHcCCCCHHH
Q 042193 596 ---AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL--RKSPISPD-VDLSALARYTHGFSGAD 669 (784)
Q Consensus 596 ---~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~--~~~~~~~~-~~~~~la~~~~g~sg~d 669 (784)
...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..++ ++..+..+ +++..+|+.|.||||||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 3568999999999999999999999999999999999999999998654 44455433 57999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc-------CCCCHHHHHHHH
Q 042193 670 ITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR-------RSVSDADIRKYQ 739 (784)
Q Consensus 670 i~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~-------~s~~~~~~~~~~ 739 (784)
|.++|++|+..|++++ ...|+..+++.|+.... .+..+.++..||
T Consensus 1846 LanLvNEAaliAirq~-------------------------ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yE 1897 (2281)
T CHL00206 1846 LVALTNEALSISITQK-------------------------KSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQ 1897 (2281)
T ss_pred HHHHHHHHHHHHHHcC-------------------------CCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhH
Confidence 9999999999999875 23588899999887541 234455666664
No 51
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.6e-34 Score=335.76 Aligned_cols=248 Identities=42% Similarity=0.786 Sum_probs=225.3
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMW 534 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 534 (784)
....|.++.|.+..++.+.+.+.+ ...+..+..++...++|++|+||||||||+++++++++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998877 4556777788888899999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCc
Q 042193 535 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDP 614 (784)
Q Consensus 535 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~ 614 (784)
+|.....++.+|+.++...||||||||||.+...|+...+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999888654333334556799999999999988889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042193 615 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERER 694 (784)
Q Consensus 615 allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 694 (784)
|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||.++|++|+..|.+++
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hccccCCCCccccccCcccccHHHHHHHHhhccC
Q 042193 695 SGKRKRENPEAMEVDDVDEITAAHFEESMKYARR 728 (784)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 728 (784)
...|+.+||++|+..+.+
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhc
Confidence 236999999999987644
No 52
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.9e-34 Score=338.59 Aligned_cols=266 Identities=51% Similarity=0.853 Sum_probs=236.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
+.++|++|+|++..++.|++.+.+|+.++++++.+++.++.++|||||||||||++|+++|++++.+++.++++++.++|
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC-chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
.|+++..++.+|+.+....|||+||||+|.+++.++.. .....++++++|+..|+++....+++||+|||+|+.+|+++
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 99999999999999999999999999999999988643 23466889999999999998888999999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc-ch
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED-ET 419 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~~ 419 (784)
.|+|||++.++++.|+.++|.+||+.+.+++++..++++..++..|+||+|+|+..+|++|++.++++......... ..
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~ 687 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV 687 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998886543221000 00
Q ss_pred hhHhhhhcccccchhhhhhcccCCcccc
Q 042193 420 IDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 420 ~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
...+......++.+||..++..+.|+..
T Consensus 688 ~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 688 GEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred ccccccccCcccHHHHHHHHHHcCCCCC
Confidence 0001122356889999999998888754
No 53
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-35 Score=337.39 Aligned_cols=267 Identities=37% Similarity=0.673 Sum_probs=228.2
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-----CcEEEEecc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFVSVKGP 528 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~i~v~~~ 528 (784)
...+.|+++||++.++.+|++++..|+.+|+.|..++++||+|+||+||||||||++|+++|..+. ..|+.-+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 357899999999999999999999999999999999999999999999999999999999999873 567778999
Q ss_pred cchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 529 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
+.+++|+|+.+++.+.+|+.|+...|+||||||||-|++.|+... ...+..++++||..|||+...+.|+|||||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 999999999999999999999999999999999999999986431 23567799999999999999999999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 609 PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 609 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
|+.+|||+.||||||+.++||+|+.+.|.+|+.++.++-.-. ...-+..||+.+.||-|+||+++|.+|++.++++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999998775411 2223778999999999999999999999999987532
Q ss_pred HHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCH
Q 042193 688 KDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSD 732 (784)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~ 732 (784)
.... ....-.++.. ...|+.+||..|+....|+.+.
T Consensus 496 q~y~--------s~~kl~~d~~-~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 496 QIYS--------SSDKLLIDVA-LIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eeec--------ccccccccch-hhhhhhHhhhhhhhccCCCCCc
Confidence 2110 0000011111 1248899999999888776544
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.4e-33 Score=310.03 Aligned_cols=250 Identities=50% Similarity=0.828 Sum_probs=224.6
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.+.|++|+|++++++.+++.+.+|+.+|+.|+.+|+.++++|||+||||||||++|+++|++++.+++.+++.++...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.|+.+..++.+|+.+....|++|||||+|.++..+..... ....+.+.+++..++++....++.||++||+++.+|
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999877654321 122345566777788877777899999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
+++.|+|||++.|+++.|+.++|.+||+.++.++.+..+.++..++..|+||+++|+..+|++|++.++++.
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~-------- 356 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD-------- 356 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999988888999999999999999999999999999888753
Q ss_pred chhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
...++.+||..|+..+.++..
T Consensus 357 ---------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 357 ---------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ---------CCCcCHHHHHHHHHHHhcccc
Confidence 234778899999988766543
No 55
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=9.6e-34 Score=310.63 Aligned_cols=246 Identities=50% Similarity=0.797 Sum_probs=221.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..+..+|+||||++++++.|++++.+|+.+|++++.+|+.++.++||+||||||||++|+++|++++..++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchH---HHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE---VERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
.+.|+.+..++.+|..+....|+|+||||+|.++.++...... ...+.+.+++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999876533221 1234456778888888777789999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..++||+++|+..+|.+|++.++++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999998899999999999999999999999999999887642
Q ss_pred cchhhHhhhhcccccchhhhhhcccC
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+||..|+..+
T Consensus 410 -----------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 347778888877754
No 56
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=321.83 Aligned_cols=249 Identities=52% Similarity=0.842 Sum_probs=232.0
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.+.|.++||++..++.+++.+.+++.+++.|...++.++.++||+||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
|.|+++++++.+|+.|+...|||+|+||+|++++.++...+....+++.+|+..|+++....+|+||++||+|+.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987766666899999999999999999999999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC--cccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccc
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK--LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 418 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 418 (784)
.|+|||+..++++.|+..+|.+|++.++.... +..++++..++..|+||+|+|+..+|++|++.++++..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998554 46789999999999999999999999999998887642
Q ss_pred hhhHhhhhcccccchhhhhhcccCCcc
Q 042193 419 TIDAEVLNSMAVTNEHFRTALEMSNPS 445 (784)
Q Consensus 419 ~~~~~~~~~~~v~~~d~~~al~~~~ps 445 (784)
...++.+||..+++...|+
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCC
Confidence 2357888999999887765
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=4e-32 Score=321.68 Aligned_cols=440 Identities=23% Similarity=0.347 Sum_probs=300.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++++.|.++++.++.+++.. ....+++|+||||||||++++.+|..+ +..++
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 3445678899999999987776643 235689999999999999999999987 66788
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMG 328 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 328 (784)
.++...+. .++.|+.+.+++.+|+.+....++||||||+|.++..+....+..+ +.+.|...+ .++.+.+||
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~Ig 316 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIG 316 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEE
Confidence 89888887 4788999999999999998878999999999999876543332221 223333333 357899999
Q ss_pred EcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC----c-ccchhhhHHHHhcCCCcHHH-----
Q 042193 329 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK----L-AEDVDLERVARDTHGYVGAD----- 393 (784)
Q Consensus 329 atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~----~-~~~~~l~~la~~t~g~~~~d----- 393 (784)
+|+..+ ..|+++.| ||. .|+++.|+.+++.+||+.....+. + ..+..+..++..++.|.+..
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 999643 56999999 996 699999999999999996554321 1 23444677777777775432
Q ss_pred HHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCccccc------------
Q 042193 394 LAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWED------------ 461 (784)
Q Consensus 394 l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~------------ 461 (784)
...++.+|+....-... ......++.+|+...+..... +....+.|++
T Consensus 394 ai~lld~a~a~~~~~~~-------------~~~~~~v~~~~i~~~i~~~tg-------iP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 394 AIDVIDEAGASFRLRPK-------------AKKKANVSVKDIENVVAKMAH-------IPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred HHHHHHHhhhhhhcCcc-------------cccccccCHHHHHHHHHHHhC-------CChhhhhhHHHHHHHHHHHHHh
Confidence 24455555432110000 001233566666666554321 1122233333
Q ss_pred --ccchhhhhhhhccccccccCChhhhhhcccC----CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh---
Q 042193 462 --IGGLETVKRELQETVQYPVEHPEKFEKFGLS----PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT--- 532 (784)
Q Consensus 462 --i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~--- 532 (784)
+.|++.+++.+...+.. .+.|+. |...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 44555555555444332 122332 2234899999999999999999999999999999988643
Q ss_pred --cccCcch-----HHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------C
Q 042193 533 --MWFGESE-----ANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------A 596 (784)
Q Consensus 533 --~~~g~~~-----~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~ 596 (784)
+.+|... ...+.+.+..+....+|+||||||.+. ..+.+.|++.||... +
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCcccC
Confidence 1222211 123345566667778999999999753 457889999998641 1
Q ss_pred CCcEEEEEecCCCC-------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-----
Q 042193 597 KKTVFIIGATNRPD-------------------------VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK----- 646 (784)
Q Consensus 597 ~~~v~vi~aTn~~~-------------------------~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~----- 646 (784)
..+.++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..++.
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l 669 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQL 669 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34688999998741 24667776 99999999999999999999887753
Q ss_pred --CCCC---CccCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 647 --SPIS---PDVDLSALARY--THGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 647 --~~~~---~~~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
.++. ++.-++.|++. ...+..+.|+.+++.-...++.+.+
T Consensus 670 ~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 670 NEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred HhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 1222 11225567764 3456678888888887777766554
No 58
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-33 Score=308.72 Aligned_cols=231 Identities=47% Similarity=0.782 Sum_probs=216.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
...++|.|+.|.++.++++.++++. ++.|..|..+|...|+||||+||||||||+||+++|++.+.+++.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3567899999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
++|-...++|.+|.++++++|||+||||+|++..+|+.. ..+..+...+||+..||++..+..|+++++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999998643 23334568899999999999888999999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDV 412 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 412 (784)
++|.|||||++.|.++.|+...|.+|++.|.++.++..++++..+|+.|.||+|+|+..++.+|++.+.++....
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999888775443
No 59
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.4e-32 Score=285.38 Aligned_cols=218 Identities=18% Similarity=0.255 Sum_probs=173.0
Q ss_pred cccc-cchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCc
Q 042193 459 WEDI-GGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGE 537 (784)
Q Consensus 459 ~~~i-~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~ 537 (784)
|+.+ ||+.-.+..+........++ .+...++++|.+++||||||||||++|+++|++++.+++.++++++.++|+|+
T Consensus 114 f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 114 FDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred hhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 4444 55554444444433322111 22235789999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhh-----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHH-HHHHHHhhCC------------CCCCc
Q 042193 538 SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGASVGDAGGAADRVL-NQLLTEMDGM------------NAKKT 599 (784)
Q Consensus 538 ~~~~i~~~f~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l-~~ll~~ld~~------------~~~~~ 599 (784)
+++.++++|+.|+. ..||||||||||++++.|+.. ......+++ .+||++||+. ....+
T Consensus 192 sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 192 PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 99999999999975 469999999999999988632 223445555 8999999863 23567
Q ss_pred EEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCC----CCHHHHHHHHH
Q 042193 600 VFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG----FSGADITEICQ 675 (784)
Q Consensus 600 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g----~sg~di~~l~~ 675 (784)
|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.++++.+++ ..++..|+....| |.|+--..+..
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999999864 5899999999999999998886 4778888888766 66765555666
Q ss_pred HHHHHHHHH
Q 042193 676 RACKYAIRE 684 (784)
Q Consensus 676 ~a~~~a~~~ 684 (784)
++...-+.+
T Consensus 346 ~~v~~~i~~ 354 (413)
T PLN00020 346 DEVRKWIAE 354 (413)
T ss_pred HHHHHHHHH
Confidence 655555443
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-31 Score=308.16 Aligned_cols=448 Identities=20% Similarity=0.291 Sum_probs=295.3
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 253 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~~v~ 253 (784)
-.++.+.|.++.+.++.+++.. ....++||+||||||||++++.++..+ +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3467899999999988876654 134678999999999999999999864 34455565
Q ss_pred chhhh--hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcC
Q 042193 254 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331 (784)
Q Consensus 254 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn 331 (784)
...+. ..+.|+.+.+++.+|..+....++||||||+|.++..+....+.. .+.+ ++..+..++.+.+||+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~--d~~n----lLkp~L~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--DAAN----LIKPLLSSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH--HHHH----HHHHHHhCCCeEEEecCC
Confidence 55555 357789999999999999888889999999999988764332222 1222 233333567899999999
Q ss_pred CCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchh-----hhHHHHhcCCC-----cHHHHHH
Q 042193 332 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVD-----LERVARDTHGY-----VGADLAA 396 (784)
Q Consensus 332 ~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~-----l~~la~~t~g~-----~~~dl~~ 396 (784)
.++ ..|+++.| ||. .|.++.|+.+++..||+.+...+....++. +...+..+..| .+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 865 46999998 995 699999999999999998766555433332 33444444443 4445667
Q ss_pred HHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCccccc-------ccccccCCcccccccchhhhh
Q 042193 397 LCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALR-------ETVVEVPNVSWEDIGGLETVK 469 (784)
Q Consensus 397 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~-------~~~~~~~~~~~~~i~g~~~~k 469 (784)
++.+|+....-... . .....++..++...+.....-... +........--..+.|+++++
T Consensus 401 lldea~a~~~~~~~---~----------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai 467 (758)
T PRK11034 401 VIDEAGARARLMPV---S----------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAI 467 (758)
T ss_pred HHHHHHHhhccCcc---c----------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHH
Confidence 78877653210000 0 001123444444433322110000 000001111113478888888
Q ss_pred hhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh-----cccCcchHH---
Q 042193 470 RELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT-----MWFGESEAN--- 541 (784)
Q Consensus 470 ~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~-----~~~g~~~~~--- 541 (784)
+.+.+.+...... +.. .-+|...+||+||||||||++|+++|..++.+++.++++++.. .++|.....
T Consensus 468 ~~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~ 543 (758)
T PRK11034 468 EALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_pred HHHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccc
Confidence 8888776532110 000 1123345999999999999999999999999999999887642 233322111
Q ss_pred --HHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC-
Q 042193 542 --VREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP- 609 (784)
Q Consensus 542 --i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~- 609 (784)
-+.+.+..+....+|+||||||.+. ..+++.|++.||... .-.+.++|+|||.-
T Consensus 544 ~~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 544 DQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred cccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 1234444556667999999999853 458899999998431 12578899999932
Q ss_pred ------------------------CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc-------cCCCCCccC---H
Q 042193 610 ------------------------DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-------KSPISPDVD---L 655 (784)
Q Consensus 610 ------------------------~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~-------~~~~~~~~~---~ 655 (784)
..+.|.++. |+|.+|.|++.+.++..+|+...++ ..++.-..+ +
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 125678887 9999999999999999999987653 223332222 5
Q ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 656 SALARYT--HGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 656 ~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
+.|++.. ..+-.+.|+.+++.-...++.+.+
T Consensus 688 ~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 688 DWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 5566543 345567888888877777766554
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=3.7e-31 Score=294.63 Aligned_cols=242 Identities=25% Similarity=0.417 Sum_probs=209.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
...+|++|||++..++.+++.... ++.....+|+.+++|+||+||||||||++|+++|++++.+++.+++..+.+.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 456789999999999888765432 23445678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCC-CchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-TNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
.|+++.+++.+|+.+....||||||||+|.++.++.. ..+....++..+++.+|+. ...+++||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 3445667888999999875 345799999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc--ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccc
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL--AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 418 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 418 (784)
.|+|||++.++++.|+.++|.+||+.++.+... ..+.++..++..|+||+|+||..+|.+|...+..+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999987643 247789999999999999999999999988776432
Q ss_pred hhhHhhhhcccccchhhhhhcccCCccc
Q 042193 419 TIDAEVLNSMAVTNEHFRTALEMSNPSA 446 (784)
Q Consensus 419 ~~~~~~~~~~~v~~~d~~~al~~~~ps~ 446 (784)
..++.+|+..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2367889999999888865
No 62
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-32 Score=272.82 Aligned_cols=230 Identities=43% Similarity=0.761 Sum_probs=210.4
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
+...+++|+.+||+-.++..+++.+.+|+..|++|..+|+.+|.+++||||||+|||.+|++++..++..++.+..+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHH---HHHhhccccCCcEEEEEEcCCCCC
Q 042193 259 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL---LTLMDGLKSRAHVVVMGATNRPNS 335 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L---l~~ld~~~~~~~vivI~atn~~~~ 335 (784)
+++.|++...++..|..|..+.||++|+||||++...+.+.....++.+..+| ++.|+++....+|-+|.|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999888554444445555554 555667777789999999999999
Q ss_pred CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 336 IDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 336 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
++|+|.|+||+++.+++|.|++..|..|++.|.+.+......+.+.+.+.+++|.|+|+...|++|.+.+++.
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 9999999999999999999999999999999999888888888999999999999999999999998766654
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=8.4e-31 Score=287.41 Aligned_cols=245 Identities=53% Similarity=0.868 Sum_probs=217.2
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..+.+.|++|+|++++++.|++.+.+|+.+|+.+..+|+.+++++||+||||||||++|++++++++.+++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
.+.++....++.+|+.+....|++|||||+|.+...+..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999876643321 12234456677777777666789999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
|+++.+++||++.++++.|+.++|.+|++.++..+.+..+.++..++..++||+++|+..+|.+|++.++++..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~------ 348 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER------ 348 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999998888888999999999999999999999999999887532
Q ss_pred cchhhHhhhhcccccchhhhhhccc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEM 441 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~ 441 (784)
..++.+||..|+..
T Consensus 349 -----------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 -----------DYVTMDDFIKAVEK 362 (364)
T ss_pred -----------CccCHHHHHHHHHH
Confidence 34677788877654
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=6.2e-31 Score=299.42 Aligned_cols=244 Identities=45% Similarity=0.755 Sum_probs=218.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.++|+||+|+++.++++++++.. +.+++.+..++..+++++||+||||||||++++++|++++.+++.+++.++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678899999999999999998886 889999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.|.....++.+|+.+....|+||||||+|.++.+++.. ......+++++|+..|+++.....++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999877542 12334577889999999998888999999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
++++|++||++.++++.|+.++|.+|++.++....+..+.++..++..+.||+++|+..+|++|+..+.++..
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~------- 280 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK------- 280 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999999999888877888899999999999999999999999887665421
Q ss_pred chhhHhhhhcccccchhhhhhcccC
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+++..++...
T Consensus 281 ----------~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 281 ----------TEITMNDIEEAIDRV 295 (495)
T ss_pred ----------CCCCHHHHHHHHHHH
Confidence 236667777777654
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.7e-30 Score=288.35 Aligned_cols=221 Identities=43% Similarity=0.716 Sum_probs=194.9
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------E
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF----------F 249 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~----------~ 249 (784)
..++++|++|||++++++++++.+.+|+.+|++|+.+|+.+++++|||||||||||++++++|++++.. +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457889999999999999999999999999999999999999999999999999999999999998543 5
Q ss_pred EEEechhhhhhhcchhHHHHHHHHHHHHhc----CCeEEEeehhhhhcCCCCCC-chHHHHHHHHHHHHHhhccccCCcE
Q 042193 250 FLINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-NGEVERRIVSQLLTLMDGLKSRAHV 324 (784)
Q Consensus 250 ~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v 324 (784)
+.+.++++.++|.|+.+..++.+|+.+... .|+|+||||+|.++.+++.. .++.+.+++.+|++.|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 567788899999999999999999988763 69999999999999887653 3456788899999999999888899
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC-CCcccchhhhHHHHhcCCCcHHHHHHHHHHHHH
Q 042193 325 VVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN-MKLAEDVDLERVARDTHGYVGADLAALCTEAAL 403 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 403 (784)
+||++||+++.||+++.|+|||+.+|+++.|+.++|.+||+.++.. +++ ......+.|+.++++..+++++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754 333 222345789999999999999865
Q ss_pred HHH
Q 042193 404 QCI 406 (784)
Q Consensus 404 ~~~ 406 (784)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 444
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=9.3e-30 Score=292.05 Aligned_cols=243 Identities=42% Similarity=0.733 Sum_probs=215.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
..++|+|++|+++.++.+.+++.. +..++.+..++...++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999999998876 7888999999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCH
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~ 338 (784)
.|.....++.+|+.+....||||||||+|.++..++.. .......++.+|+..++++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776532 223345677889999999888889999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 418 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 418 (784)
++.|+|||++.+.++.|+.++|.+||+.+++...+..+.++..++..+.||+++|+..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887788888999999999999999999999999887765432
Q ss_pred hhhHhhhhcccccchhhhhhcccC
Q 042193 419 TIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 419 ~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+++..|+..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 235666777776653
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-29 Score=266.00 Aligned_cols=261 Identities=41% Similarity=0.663 Sum_probs=219.9
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
...++.|+|++|++..++.+.+++.+|+..|.+|..+. .+.+++||.||||+|||+|+++||.+.+..|+.+.++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45678999999999999999999999999999998754 56679999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCcEEEEEEcCCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS--RAHVVVMGATNRPNSID 337 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~vivI~atn~~~~ld 337 (784)
+|+|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++... ..+|+||||||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 9999999999999999999999999999999999999666666777888777776665543 45899999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC-cccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK-LAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~-~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
.+++| ||.+.++++.|+.+.|..+|..++...+ ...+.++..+++.|+||++.|+.++|++|++.-++.......+
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~- 381 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL- 381 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh-
Confidence 99999 9999999999999999999998876653 3356789999999999999999999999998666544332000
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
..+. ......++..||..++..+.++..
T Consensus 382 -~~~~--~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 382 -EFID--ADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred -hhcc--hhccCCCCcchHHHHHHhhccccC
Confidence 0011 112345667788888777766543
No 68
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=3.4e-28 Score=252.78 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=160.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHh-----cCCeEEEeehhh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEID 290 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid 290 (784)
+++.+|.+++||||||||||++|+++|++++..++.++++++.++|.|++++.++.+|+.|.. ..||+|||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 678999999999999999999999999999999999999999999999999999999999975 469999999999
Q ss_pred hhcCCCCCCchHHHHHHH-HHHHHHhhcc------------ccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCH
Q 042193 291 SIAPKREKTNGEVERRIV-SQLLTLMDGL------------KSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDE 357 (784)
Q Consensus 291 ~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~ 357 (784)
.++++++.....+..+++ .+|++++|+. .....|+||+|||+|+.||++|+|+|||++.+ ..|+.
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 999998766556655555 8999999863 23467999999999999999999999999964 68999
Q ss_pred HHHHHHHHHHHcCCCcccchhhhHHHHhcCC----CcHHHHHHHHHHHHHHHH
Q 042193 358 VGRLEVFRIHTKNMKLAEDVDLERVARDTHG----YVGADLAALCTEAALQCI 406 (784)
Q Consensus 358 ~~R~~il~~~~~~~~~~~~~~l~~la~~t~g----~~~~dl~~l~~~a~~~~~ 406 (784)
++|.+||+.+++...+. ..++..++..+.| |.|+--..+..++....+
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 99999999999988776 4678888888776 556555555555544443
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=2.8e-27 Score=283.49 Aligned_cols=453 Identities=22% Similarity=0.346 Sum_probs=290.3
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 253 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~~v~ 253 (784)
-.++.+.|.+++++++.+++.. ...++++|+||||||||++++.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3578899999999999888754 235689999999999999999999986 35788899
Q ss_pred chhhh--hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcC
Q 042193 254 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331 (784)
Q Consensus 254 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn 331 (784)
...+. .+|.|+++.+++.+|+.+....++||||||+|.+...++...+ + .+.+.|. ....++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~~a~lLk----p~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--DAANILK----PALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--cHHHHhH----HHHhCCCcEEEEeCC
Confidence 88876 4678999999999999998888899999999999876543222 1 1222222 333467899999999
Q ss_pred CCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHc------CCCcccchhhhHHHHhcCCCcHH-----HHH
Q 042193 332 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTK------NMKLAEDVDLERVARDTHGYVGA-----DLA 395 (784)
Q Consensus 332 ~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~------~~~~~~~~~l~~la~~t~g~~~~-----dl~ 395 (784)
..+ ..|+++.+ ||.. +.++.|+.++...|++.... +..+ .+..+..++..+.+|.+. ...
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred HHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCccccCchHHH
Confidence 764 46899998 8864 78999999999999875432 1222 333477777888877653 233
Q ss_pred HHHHHHHHHH-HHhhcccccc------------------ccch-------------hhHhh--------------hhccc
Q 042193 396 ALCTEAALQC-IREKMDVIDL------------------EDET-------------IDAEV--------------LNSMA 429 (784)
Q Consensus 396 ~l~~~a~~~~-~~~~~~~~~~------------------~~~~-------------~~~~~--------------~~~~~ 429 (784)
.++.+|+... +........+ .+.. +.... .....
T Consensus 392 dlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (821)
T CHL00095 392 DLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPV 471 (821)
T ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 4555554322 1100000000 0000 00000 00012
Q ss_pred ccchhhhhhcccCCcccccc-------cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccC----CCceeE
Q 042193 430 VTNEHFRTALEMSNPSALRE-------TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLS----PSKGVL 498 (784)
Q Consensus 430 v~~~d~~~al~~~~ps~~~~-------~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~g~l 498 (784)
++.+++...+.....-.... ........--..+.|++.+++.+...+... +.|+. |...+|
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~l 543 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFL 543 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEE
Confidence 33333333332211000000 000000001134667777777776665432 11221 223489
Q ss_pred EEcCCCCChhHHHHHHHHHh---CCcEEEEecccchh-----c-------ccCcchHHHHHHHHHhhhCCCeEEEEeccc
Q 042193 499 FYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELD 563 (784)
Q Consensus 499 l~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~-----~-------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid 563 (784)
|+||+|+|||++|++||..+ +.+++.++++++.. + |+|..+ .+.+.+..+..+.+|++|||||
T Consensus 544 f~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeie 621 (821)
T CHL00095 544 FSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIE 621 (821)
T ss_pred EECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChh
Confidence 99999999999999999986 36789998887632 2 333221 2346666677777999999999
Q ss_pred hhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCCCC-----------------------
Q 042193 564 SIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPDV----------------------- 611 (784)
Q Consensus 564 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~~~----------------------- 611 (784)
.. ...+.+.|++.|+... ...+.++|+|||....
T Consensus 622 ka--------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~ 687 (821)
T CHL00095 622 KA--------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQY 687 (821)
T ss_pred hC--------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccH
Confidence 74 3568899999998532 2357899999986311
Q ss_pred --------------CCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-------CCCCCcc---CHHHHHHH--cCCC
Q 042193 612 --------------IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-------SPISPDV---DLSALARY--THGF 665 (784)
Q Consensus 612 --------------ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~~~~---~~~~la~~--~~g~ 665 (784)
+.|.++. |+|.+|.|.+.+.++..+|++..++. .++.-.. -...|++. ...+
T Consensus 688 ~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~ 765 (821)
T CHL00095 688 KRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLY 765 (821)
T ss_pred HHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCC
Confidence 2256676 99999999999999999998877643 2222111 25566664 2345
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 042193 666 SGADITEICQRACKYAIRENI 686 (784)
Q Consensus 666 sg~di~~l~~~a~~~a~~~~~ 686 (784)
-.+.|..+++.-...++.+.+
T Consensus 766 GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 766 GARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred ChhhHHHHHHHHHHHHHHHHH
Confidence 577888888777766666544
No 70
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=5.3e-28 Score=281.29 Aligned_cols=242 Identities=42% Similarity=0.711 Sum_probs=215.0
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcc
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 263 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g 263 (784)
..|+++.|++..++++.+++.+ +..+..+..++...++++||+||||||||+++++++++++.+++.+++.++...+.+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 4578999999999999999887 566777888888889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 264 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 264 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
.....++.+|+.+....|||+||||+|.++.+++.. ......+++++|+..||++.....++||++||+|+.+|+++
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al 307 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 307 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHH
Confidence 999999999999999999999999999999877542 22334567889999999998888999999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchh
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETI 420 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~ 420 (784)
.|++||++.+.++.|+.++|.+||+.++.+.++..+.++..++..+.||+++|+..+|++|+..+.++..
T Consensus 308 ~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~---------- 377 (644)
T PRK10733 308 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK---------- 377 (644)
T ss_pred hCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC----------
Confidence 9999999999999999999999999999999988889999999999999999999999999988876432
Q ss_pred hHhhhhcccccchhhhhhcccCC
Q 042193 421 DAEVLNSMAVTNEHFRTALEMSN 443 (784)
Q Consensus 421 ~~~~~~~~~v~~~d~~~al~~~~ 443 (784)
..++..|+..++..+.
T Consensus 378 -------~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 378 -------RVVSMVEFEKAKDKIM 393 (644)
T ss_pred -------CcccHHHHHHHHHHHh
Confidence 2356667777766543
No 71
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3.2e-28 Score=291.27 Aligned_cols=198 Identities=21% Similarity=0.280 Sum_probs=167.0
Q ss_pred CChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh----------cc--------------
Q 042193 208 RHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL----------AG-------------- 263 (784)
Q Consensus 208 ~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~----------~g-------------- 263 (784)
..+.....+|+.+++||||+||||||||.||++||++.+.+++.|++++++..+ .|
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 334566788999999999999999999999999999999999999999998643 11
Q ss_pred -----------------h--hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc---cC
Q 042193 264 -----------------E--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK---SR 321 (784)
Q Consensus 264 -----------------~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---~~ 321 (784)
. ...+++.+|+.|+..+||||||||||.++.+.. ....+.+|++.|++.. ..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCC
Confidence 1 123488999999999999999999999987621 1123688999998763 34
Q ss_pred CcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHH--HcCCCcccc-hhhhHHHHhcCCCcHHHHHHHH
Q 042193 322 AHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIH--TKNMKLAED-VDLERVARDTHGYVGADLAALC 398 (784)
Q Consensus 322 ~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~--~~~~~~~~~-~~l~~la~~t~g~~~~dl~~l~ 398 (784)
.+|+||||||+|+.+||||+|||||++.|.++.|+..+|.+++..+ ++++.+..+ ++++.+|..|.||+|+|++++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 5799999999999999999999999999999999999999988754 455555543 5789999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 042193 399 TEAALQCIREKMD 411 (784)
Q Consensus 399 ~~a~~~~~~~~~~ 411 (784)
.+|++.++++...
T Consensus 1851 NEAaliAirq~ks 1863 (2281)
T CHL00206 1851 NEALSISITQKKS 1863 (2281)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999887543
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=2e-26 Score=274.34 Aligned_cols=449 Identities=20% Similarity=0.273 Sum_probs=281.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG----------AFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~----------~~~~ 250 (784)
..+-.++++.|.++.+.++.+++.. ....+++|+||||||||++++.+|..+. ..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 3445678999999987777766543 2345789999999999999999999862 3456
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
.++...+. ..+.|+.+.+++.+|+.+.. ..+.||||||+|.+...++.... .+ ..+.|.. ...++.+.+|
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d--~~n~Lkp----~l~~G~l~~I 320 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GD--AANLLKP----ALARGELRTI 320 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-cc--HHHHhhH----HhhCCCeEEE
Confidence 66666655 36789999999999999865 46789999999999976543211 11 1222333 3356789999
Q ss_pred EEcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-----ccchhhhHHHHhcCCCcHH-----
Q 042193 328 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-----AEDVDLERVARDTHGYVGA----- 392 (784)
Q Consensus 328 ~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-----~~~~~l~~la~~t~g~~~~----- 392 (784)
|+|+..+ .+|++|.| ||. .|.++.|+.+++..||+.+...+.. ..+..+..++..+.+|...
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9998643 47999999 995 7999999999999998766544321 1344577888888887543
Q ss_pred HHHHHHHHHHHHH-HHhhcccccc------------------cc-----ch------hhHh------hhh---------c
Q 042193 393 DLAALCTEAALQC-IREKMDVIDL------------------ED-----ET------IDAE------VLN---------S 427 (784)
Q Consensus 393 dl~~l~~~a~~~~-~~~~~~~~~~------------------~~-----~~------~~~~------~~~---------~ 427 (784)
....++.+|+... +........+ .+ .. ...+ ... .
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEK 477 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445443211 1100000000 00 00 0000 000 0
Q ss_pred -------------------------------------------------ccccchhhhhhcccCCcccccccccccCCcc
Q 042193 428 -------------------------------------------------MAVTNEHFRTALEMSNPSALRETVVEVPNVS 458 (784)
Q Consensus 428 -------------------------------------------------~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~ 458 (784)
..++..++...+.. ++-+.+..+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~-------~tgip~~~~~ 550 (852)
T TIGR03345 478 ELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVAD-------WTGIPVGRMV 550 (852)
T ss_pred HHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHH-------HHCCCchhhc
Confidence 00001111110000 0000111111
Q ss_pred --------------cccccchhhhhhhhccccccccCChhhhhhcccC---CCce-eEEEcCCCCChhHHHHHHHHHh--
Q 042193 459 --------------WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLS---PSKG-VLFYGPPGCGKTLLAKAIANEC-- 518 (784)
Q Consensus 459 --------------~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~g-~ll~Gp~GtGKT~la~~la~~~-- 518 (784)
-..+.|++.+.+.+.+.+.... .|+. .|.| +||+||||+|||.+|+++|..+
T Consensus 551 ~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 551 RDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 1235566666665555543211 1222 2344 8999999999999999999987
Q ss_pred -CCcEEEEecccchh------------cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHH
Q 042193 519 -QANFVSVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLN 585 (784)
Q Consensus 519 -~~~~i~v~~~~l~~------------~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 585 (784)
...++.++++++.. .|+|..+. +.+.+..++.+++||+||||+.. ...+.+
T Consensus 623 ~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~ 686 (852)
T TIGR03345 623 GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLE 686 (852)
T ss_pred CCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHH
Confidence 45788999887642 24443221 23455556778899999999863 356788
Q ss_pred HHHHHhhCCC---------CCCcEEEEEecCCCC-----------------------------CCCccccCCCCcccccc
Q 042193 586 QLLTEMDGMN---------AKKTVFIIGATNRPD-----------------------------VIDPALLRPGRLDQLIY 627 (784)
Q Consensus 586 ~ll~~ld~~~---------~~~~v~vi~aTn~~~-----------------------------~ld~allr~gRf~~~i~ 627 (784)
.|++.||... .-.+.+||.|||... .+.|+++. |++ +|.
T Consensus 687 ~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~ 763 (852)
T TIGR03345 687 LFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIP 763 (852)
T ss_pred HHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEE
Confidence 8888888542 125688999999631 14577777 997 889
Q ss_pred cCCCCHHHHHHHHHHHhccC--------CCCCcc---CHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHH
Q 042193 628 IPLPDEASRLQIFKACLRKS--------PISPDV---DLSALARYTHG--FSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 628 ~~~p~~~~r~~il~~~~~~~--------~~~~~~---~~~~la~~~~g--~sg~di~~l~~~a~~~a~~~~~ 686 (784)
|.+.+.++..+|++..+... ++.-.+ -++.|++...+ |-.+.+..+++.-...++.+.+
T Consensus 764 F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 764 YLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998766431 322112 25667766533 5578888888877766666544
No 73
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=1.6e-26 Score=277.65 Aligned_cols=459 Identities=23% Similarity=0.349 Sum_probs=286.1
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++.+.|.++.+.++.+++.. ....+++|+||||||||++++.++..+ +..++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 3444678899999988888777644 234678999999999999999999886 45677
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHhc-CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
.++...+. ..|.|+.+.+++.+|..+... .+.||||||+|.+...+..... . ...+.| .....++.+.+|
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~--d~~~~L----k~~l~~g~i~~I 306 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-M--DAGNML----KPALARGELHCI 306 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-h--HHHHHh----chhhhcCceEEE
Confidence 77776665 467889999999999988653 5899999999999875433221 1 122222 233356789999
Q ss_pred EEcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-----cchhhhHHHHhcCCCcHH-----
Q 042193 328 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-----EDVDLERVARDTHGYVGA----- 392 (784)
Q Consensus 328 ~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-----~~~~l~~la~~t~g~~~~----- 392 (784)
|+|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+...+... .+..+...+..++.|...
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPd 383 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCch
Confidence 9999764 47999999 996 48999999999999999876665432 233466667777777543
Q ss_pred HHHHHHHHHHHHH-HH------------hhcccc-------ccc-cc-----------h--------------hhHhh--
Q 042193 393 DLAALCTEAALQC-IR------------EKMDVI-------DLE-DE-----------T--------------IDAEV-- 424 (784)
Q Consensus 393 dl~~l~~~a~~~~-~~------------~~~~~~-------~~~-~~-----------~--------------~~~~~-- 424 (784)
-...|+.+|+... +. +....+ ... +. . +..+.
T Consensus 384 kAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (852)
T TIGR03346 384 KAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAA 463 (852)
T ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444443221 10 000000 000 00 0 00000
Q ss_pred h----------h-------------------------------------------------cccccchhhhhhcccCC--
Q 042193 425 L----------N-------------------------------------------------SMAVTNEHFRTALEMSN-- 443 (784)
Q Consensus 425 ~----------~-------------------------------------------------~~~v~~~d~~~al~~~~-- 443 (784)
. . ...++.+++...+....
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgi 543 (852)
T TIGR03346 464 IQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGI 543 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCC
Confidence 0 0 00011111111111100
Q ss_pred ccc-cc----ccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccC----CCceeEEEcCCCCChhHHHHHH
Q 042193 444 PSA-LR----ETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLS----PSKGVLFYGPPGCGKTLLAKAI 514 (784)
Q Consensus 444 ps~-~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~g~ll~Gp~GtGKT~la~~l 514 (784)
|.. +. +........-...+.|++.+.+.+...+... ..|+. |...+||+||||||||++|++|
T Consensus 544 p~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~L 615 (852)
T TIGR03346 544 PVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKAL 615 (852)
T ss_pred CcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 000 00 0000000011234566666666665554421 11222 3345999999999999999999
Q ss_pred HHHh---CCcEEEEecccchh-----cccCcchH-----HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchH
Q 042193 515 ANEC---QANFVSVKGPELLT-----MWFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAAD 581 (784)
Q Consensus 515 a~~~---~~~~i~v~~~~l~~-----~~~g~~~~-----~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~ 581 (784)
|..+ +.+++.++++++.. ..+|.... ..+.+....+....+|+|||||+.+ ..
T Consensus 616 a~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka--------------~~ 681 (852)
T TIGR03346 616 AEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA--------------HP 681 (852)
T ss_pred HHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC--------------CH
Confidence 9986 46899999887632 22221111 1233445556666789999999874 35
Q ss_pred HHHHHHHHHhhCCC---------CCCcEEEEEecCCCC-------------------------CCCccccCCCCcccccc
Q 042193 582 RVLNQLLTEMDGMN---------AKKTVFIIGATNRPD-------------------------VIDPALLRPGRLDQLIY 627 (784)
Q Consensus 582 ~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~ld~allr~gRf~~~i~ 627 (784)
.+++.||+.|+... +-.+.+||+|||... .+.|.|+. |+|.++.
T Consensus 682 ~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Iiv 759 (852)
T TIGR03346 682 DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVV 759 (852)
T ss_pred HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEe
Confidence 67889999887532 135688999999832 13467776 9999999
Q ss_pred cCCCCHHHHHHHHHHHhcc-------CCCCCcc---CHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Q 042193 628 IPLPDEASRLQIFKACLRK-------SPISPDV---DLSALARYTH--GFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 628 ~~~p~~~~r~~il~~~~~~-------~~~~~~~---~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
|.+++.+...+|+...+.. .++...+ -++.|++... .+..+.|+++++......+.+.+
T Consensus 760 F~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 760 FHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999876632 2222112 2566776532 56789999999998888777654
No 74
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=2.1e-26 Score=275.24 Aligned_cols=452 Identities=21% Similarity=0.328 Sum_probs=272.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++++.|.++.+.++.++++. ....+++|+||||||||++++.+|..+ +..++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 3445678899999998888877654 234579999999999999999999987 56777
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
.++...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+....+ ++ ..+.| .....++.+.+|
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-~d--~~~~l----kp~l~~g~l~~I 311 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-MD--AGNML----KPALARGELHCV 311 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc-hh--HHHHh----cchhhcCCCeEE
Confidence 88777765 45789999999999998654 56889999999999877643322 21 12222 233356789999
Q ss_pred EEcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-----cchhhhHHHHhcCCCcH-----H
Q 042193 328 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-----EDVDLERVARDTHGYVG-----A 392 (784)
Q Consensus 328 ~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-----~~~~l~~la~~t~g~~~-----~ 392 (784)
|+|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+...+... .+..+...+..++.|.. .
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pd 388 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPD 388 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCCh
Confidence 9999876 47999999 997 58899999999999999776554322 12233444455555532 1
Q ss_pred HHHHHHHHHHHHH-------------HHhhc-------cccccccc------------h--------------hhHh--h
Q 042193 393 DLAALCTEAALQC-------------IREKM-------DVIDLEDE------------T--------------IDAE--V 424 (784)
Q Consensus 393 dl~~l~~~a~~~~-------------~~~~~-------~~~~~~~~------------~--------------~~~~--~ 424 (784)
....++..++... +.+.. ........ . +... .
T Consensus 389 kAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~e 468 (857)
T PRK10865 389 KAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKAS 468 (857)
T ss_pred HHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222221000 00000 00000000 0 0000 0
Q ss_pred h----------hc-----------------------------------------------ccccchhhhhhcccCCcccc
Q 042193 425 L----------NS-----------------------------------------------MAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 425 ~----------~~-----------------------------------------------~~v~~~d~~~al~~~~ps~~ 447 (784)
. .. ..++.+++...+..
T Consensus 469 l~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~------ 542 (857)
T PRK10865 469 LSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLAR------ 542 (857)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHH------
Confidence 0 00 00001111100000
Q ss_pred cccccccCCc--------------ccccccchhhhhhhhccccccccCChhhhhhcccC----CCceeEEEcCCCCChhH
Q 042193 448 RETVVEVPNV--------------SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLS----PSKGVLFYGPPGCGKTL 509 (784)
Q Consensus 448 ~~~~~~~~~~--------------~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~g~ll~Gp~GtGKT~ 509 (784)
++-+++..+ -...+.|++.+.+.+...+... ..|+. |...++|+||||||||+
T Consensus 543 -~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~ 613 (857)
T PRK10865 543 -WTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTE 613 (857)
T ss_pred -HHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHH
Confidence 000001111 1123455555555555444321 11222 12348999999999999
Q ss_pred HHHHHHHHh---CCcEEEEecccchhc-----ccCcchH-----HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCC
Q 042193 510 LAKAIANEC---QANFVSVKGPELLTM-----WFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDA 576 (784)
Q Consensus 510 la~~la~~~---~~~~i~v~~~~l~~~-----~~g~~~~-----~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~ 576 (784)
+|++||..+ +.+++.++++++... .+|.... .-+.+....+....+|+|||||+.+.
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~---------- 683 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH---------- 683 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC----------
Confidence 999999876 457899988876431 1221110 11223333344555899999998742
Q ss_pred CCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC-------------------------CCCCccccCCCCc
Q 042193 577 GGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------------------------DVIDPALLRPGRL 622 (784)
Q Consensus 577 ~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~-------------------------~~ld~allr~gRf 622 (784)
..+++.|++.|+... +..+.+||+|||.. ..+.|+|+. |+
T Consensus 684 ----~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rl 757 (857)
T PRK10865 684 ----PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RI 757 (857)
T ss_pred ----HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hC
Confidence 457788888887431 12456889999973 124578887 99
Q ss_pred ccccccCCCCHHHHHHHHHHHhccC-------CCCCccC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 623 DQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---LSALARYT--HGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 623 ~~~i~~~~p~~~~r~~il~~~~~~~-------~~~~~~~---~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
|.++.|.+++.+....|++..+... ++.-.++ +..|++.. ..|-.+.|+.+++.-....+.+.+
T Consensus 758 d~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 758 DEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888766431 2222222 45555432 223467888888887777666554
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-25 Score=255.38 Aligned_cols=454 Identities=22% Similarity=0.336 Sum_probs=294.2
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFFLI 252 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~~v 252 (784)
.-.++.++|-++++.++.+++... ..++-+|+|+||+|||.++..+|..+ +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 345788999999999998887652 24567899999999999999999875 3345666
Q ss_pred echhhh--hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc
Q 042193 253 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT 330 (784)
Q Consensus 253 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at 330 (784)
+-..+. .+|.|+.+.+++.++++.....+.||||||+|.+.......++.++ .. +++.....++.+-+||+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D--Aa----NiLKPaLARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD--AA----NLLKPALARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc--hh----hhhHHHHhcCCeEEEEec
Confidence 655554 3788999999999999999888899999999999987654321111 12 333333467788999998
Q ss_pred CCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCccc-----chhhhHHHHhcCCCcH-----HHHH
Q 042193 331 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAE-----DVDLERVARDTHGYVG-----ADLA 395 (784)
Q Consensus 331 n~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~-----~~~l~~la~~t~g~~~-----~dl~ 395 (784)
+.-+ .-|+||.| ||.. |.+..|+.++-..||+.....+.... +.-+...+..++.|.. .-..
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7432 34899999 9954 89999999999999997665544322 2234555555555433 2234
Q ss_pred HHHHHHHHHHHHhhccccc------------cccchhh-------Hhh------------------hhcccccchhhhhh
Q 042193 396 ALCTEAALQCIREKMDVID------------LEDETID-------AEV------------------LNSMAVTNEHFRTA 438 (784)
Q Consensus 396 ~l~~~a~~~~~~~~~~~~~------------~~~~~~~-------~~~------------------~~~~~v~~~d~~~a 438 (784)
.++.+|+.+..-....... .+..... ... ... .++.+++...
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~v 462 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEV 462 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHH
Confidence 4555554322111000000 0000000 000 000 1222333333
Q ss_pred cccCCcccc-------cccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccC----CCceeEEEcCCCCCh
Q 042193 439 LEMSNPSAL-------RETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLS----PSKGVLFYGPPGCGK 507 (784)
Q Consensus 439 l~~~~ps~~-------~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~g~ll~Gp~GtGK 507 (784)
+.....-.. ++.....+..--..+.|++++...+...+... +.|+. |-.++||.||+|+||
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGK 534 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGK 534 (786)
T ss_pred HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccH
Confidence 322211000 00111111112244778888888777766532 22332 233489999999999
Q ss_pred hHHHHHHHHHhC---CcEEEEecccchh------------cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCC
Q 042193 508 TLLAKAIANECQ---ANFVSVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGAS 572 (784)
Q Consensus 508 T~la~~la~~~~---~~~i~v~~~~l~~------------~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~ 572 (784)
|.||++||..+. ..++.+++++++. .|+|--+ =+.+-+..++.++|||+||||+.
T Consensus 535 TELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK-------- 604 (786)
T COG0542 535 TELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK-------- 604 (786)
T ss_pred HHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh--------
Confidence 999999999985 7899999999963 2444333 24566777888899999999987
Q ss_pred CCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC----------------------------CCCCcc
Q 042193 573 VGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP----------------------------DVIDPA 615 (784)
Q Consensus 573 ~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~----------------------------~~ld~a 615 (784)
++..+++-||+.||... .-++.+||+|||.- ..+.|.
T Consensus 605 ------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PE 678 (786)
T COG0542 605 ------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPE 678 (786)
T ss_pred ------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHH
Confidence 56889999999999643 13578999999953 113578
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhcc-------CCCCCcc---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Q 042193 616 LLRPGRLDQLIYIPLPDEASRLQIFKACLRK-------SPISPDV---DLSALARYT--HGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 616 llr~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~~~~---~~~~la~~~--~g~sg~di~~l~~~a~~~a~~ 683 (784)
++. |+|.+|.|.+.+.+...+|+...+.. .++.-.+ -...|++.. ..|-++-|..+++.-....+.
T Consensus 679 FLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 679 FLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHH
Confidence 887 99999999999999999999876642 2222111 145566554 346667777777766655554
Q ss_pred HH
Q 042193 684 EN 685 (784)
Q Consensus 684 ~~ 685 (784)
+.
T Consensus 757 ~~ 758 (786)
T COG0542 757 DE 758 (786)
T ss_pred HH
Confidence 44
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.5e-22 Score=199.31 Aligned_cols=186 Identities=30% Similarity=0.494 Sum_probs=147.5
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcc-cCCCceeEEEcCCCCChhHHHHHHHHHhC---------CcEEEEecc
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFG-LSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFVSVKGP 528 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~---------~~~i~v~~~ 528 (784)
|+.+.--..+|+.|..+....+...+.-..-. +...+-+||+||||||||+|+|++|+.+. ...+.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66666666777777665443221111100001 23345599999999999999999999863 457899999
Q ss_pred cchhcccCcchHHHHHHHHHhhhC-----CCeEEEEeccchhhhhcC-CCCCCCCCchHHHHHHHHHHhhCCCCCCcEEE
Q 042193 529 ELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRG-ASVGDAGGAADRVLNQLLTEMDGMNAKKTVFI 602 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~~~r~-~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 602 (784)
.++++|++++.+.+..+|++.... ..-.++|||+++|+..|. .+++.+....-|++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999987543 223567999999999983 34444455677999999999999999999999
Q ss_pred EEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc
Q 042193 603 IGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK 646 (784)
Q Consensus 603 i~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~ 646 (784)
++|+|.-+.||.|+.. |-|-+.|+++|+...+.+|++..+..
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999987743
No 77
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.5e-21 Score=203.24 Aligned_cols=221 Identities=21% Similarity=0.324 Sum_probs=167.2
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccC
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFG 536 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 536 (784)
.+|+.+.--.+.|+.|.+-+....+..+-+++.|....+|.|||||||||||+++.|+|+.++..++-+.-+++.
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 567777777788888887777777888889999999999999999999999999999999999999888776653
Q ss_pred cchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCC---CC-CchHHHHHHHHHHhhCCCCCC--cEEEEEecCCCC
Q 042193 537 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGD---AG-GAADRVLNQLLTEMDGMNAKK--TVFIIGATNRPD 610 (784)
Q Consensus 537 ~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~---~~-~~~~~~l~~ll~~ld~~~~~~--~v~vi~aTn~~~ 610 (784)
.... ++.+.-..... +||+|++||+-+..|+..... .. ....-.++-||+.+||+-+.. --+||.|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2222 77787776655 699999999977654432221 11 123457899999999986543 678899999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCC--CCHHHHHHHH-HH--HHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG--FSGADITEIC-QR--ACKYAIREN 685 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g--~sg~di~~l~-~~--a~~~a~~~~ 685 (784)
.|||||+||||+|.+|+++.-+.++-+.+++.++.-.. +..-+.++.+..++ .|+||+...+ .. .+..|++..
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999998885432 12224445444433 5999998733 21 344455544
Q ss_pred HH
Q 042193 686 IE 687 (784)
Q Consensus 686 ~~ 687 (784)
++
T Consensus 428 v~ 429 (457)
T KOG0743|consen 428 VE 429 (457)
T ss_pred HH
Confidence 33
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=6.9e-21 Score=200.35 Aligned_cols=214 Identities=23% Similarity=0.304 Sum_probs=163.2
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCCc---eeEEEcCCCCChhHHHHHHHHHhC-------CcEEEEecc
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSK---GVLFYGPPGCGKTLLAKAIANECQ-------ANFVSVKGP 528 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~---g~ll~Gp~GtGKT~la~~la~~~~-------~~~i~v~~~ 528 (784)
+.+++|++.+|+++.+.+.+ ..........|+.++. +++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35799999999999998876 3344556667776542 389999999999999999999752 368999999
Q ss_pred cchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 529 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
++.+.|+|+++..++.+|+.+.. +||||||+|.+...++ .......+++.|+..|+.. ..+++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999888889988753 5999999999875432 1235678889999999854 346788888764
Q ss_pred CC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHH------cCCCC-HHHHHHHHH
Q 042193 609 PD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARY------THGFS-GADITEICQ 675 (784)
Q Consensus 609 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~------~~g~s-g~di~~l~~ 675 (784)
.. .++|++.+ ||+.+|+|++|+.+++.+|++.++++....-+. ....+... ...|. ++++++++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 32 34799998 999999999999999999999999765433222 13333332 23444 899999999
Q ss_pred HHHHHHHHHH
Q 042193 676 RACKYAIREN 685 (784)
Q Consensus 676 ~a~~~a~~~~ 685 (784)
.|...-..+.
T Consensus 249 ~~~~~~~~r~ 258 (287)
T CHL00181 249 RARMRQANRI 258 (287)
T ss_pred HHHHHHHHHH
Confidence 8886655554
No 79
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=7.1e-21 Score=177.83 Aligned_cols=130 Identities=45% Similarity=0.789 Sum_probs=117.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCC-CeEEEEeccchhhhhcCCCCCC
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGASVGD 575 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~ 575 (784)
+||+||||||||++++.+|+.++.+++.++++++.+.+.+++++.+..+|+.+.... |+|+||||+|.+..... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999888 99999999999998761 22
Q ss_pred CCCchHHHHHHHHHHhhCCCCC-CcEEEEEecCCCCCCCccccCCCCcccccccCC
Q 042193 576 AGGAADRVLNQLLTEMDGMNAK-KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630 (784)
Q Consensus 576 ~~~~~~~~l~~ll~~ld~~~~~-~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~ 630 (784)
.......+++.|+..|+..... .+++||+|||.++.++++++| +||+..+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3456778999999999998765 679999999999999999998 89999999874
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=2.3e-20 Score=195.35 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=156.9
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCC---ceeEEEcCCCCChhHHHHHHHHHh-------CCcEEEEecc
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFVSVKGP 528 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~g~ll~Gp~GtGKT~la~~la~~~-------~~~~i~v~~~ 528 (784)
+++++|++.+|+.+.+.+.|+... ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999998876443 23334465533 348999999999999999999874 2478889999
Q ss_pred cchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 529 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
++.+.|+|+++..++.+|+.+. .+||||||+|.|... .........++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 369999999998631 11123466788999999865 334555555543
Q ss_pred CC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHH---------cCCCCHHHHHHH
Q 042193 609 PD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARY---------THGFSGADITEI 673 (784)
Q Consensus 609 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~---------~~g~sg~di~~l 673 (784)
.+ .++|++.+ ||+..|.||.|+.+++.+|++.+++..+..-+.+ +..+++. ...-+++.+.++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 36889988 9999999999999999999999998665432222 3444332 112457888888
Q ss_pred HHHHHHHHHHHH
Q 042193 674 CQRACKYAIREN 685 (784)
Q Consensus 674 ~~~a~~~a~~~~ 685 (784)
+..|......+.
T Consensus 231 ~e~a~~~~~~r~ 242 (261)
T TIGR02881 231 IEKAIRRQAVRL 242 (261)
T ss_pred HHHHHHHHHHHH
Confidence 887776554443
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-20 Score=192.24 Aligned_cols=180 Identities=29% Similarity=0.541 Sum_probs=143.2
Q ss_pred cCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCe-EEEEeccchhhhhc
Q 042193 491 LSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPC-VLFFDELDSIATQR 569 (784)
Q Consensus 491 ~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~-vl~iDEid~l~~~r 569 (784)
-.+.++++||||||||||++|+-||..+|..+-.+.+.++.-. -.+.-.+|.++|+.+.++... ++||||.|.++..|
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 3466779999999999999999999999999988888887432 233456899999999876544 78999999999988
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 649 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~ 649 (784)
... ..+...+..+|.||-.- .....+++++.+||+|..+|.|+-. |+|.+|+||+|..++|..++..++.++-+
T Consensus 460 nkt--ymSEaqRsaLNAlLfRT--GdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 460 NKT--YMSEAQRSALNALLFRT--GDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred chh--hhcHHHHHHHHHHHHHh--cccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 653 22345667788877442 3456688999999999999999998 99999999999999999999988855321
Q ss_pred C------------------------C---ccCHHHHHHHcCCCCHHHHHHHHHHH
Q 042193 650 S------------------------P---DVDLSALARYTHGFSGADITEICQRA 677 (784)
Q Consensus 650 ~------------------------~---~~~~~~la~~~~g~sg~di~~l~~~a 677 (784)
. . +..+.+.|+.|+||||++|..++-..
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 1 0 11267888999999999999886543
No 82
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=2.3e-20 Score=196.64 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=163.4
Q ss_pred cccchhhhhhhhccccccccCChhhhhhcccCC---CceeEEEcCCCCChhHHHHHHHHHhC-------CcEEEEecccc
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKFGLSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFVSVKGPEL 530 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~g~ll~Gp~GtGKT~la~~la~~~~-------~~~i~v~~~~l 530 (784)
+++|++++|+++.+.+.+ ...++.+...|+.+ ..+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998887 55666777778764 34699999999999999999998762 37999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC-
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP- 609 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~- 609 (784)
.+.|+|+++..++.+|+.+.. ++|||||++.+...++ .......+++.|++.|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998754 6999999999865332 1235677889999999853 3567888887643
Q ss_pred -C---CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHc------CC-CCHHHHHHHHHHH
Q 042193 610 -D---VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYT------HG-FSGADITEICQRA 677 (784)
Q Consensus 610 -~---~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~------~g-~sg~di~~l~~~a 677 (784)
+ .++|++.+ ||+..|+||+|+.+++.+|++.++++....-+. ....+..+. +. -+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3 24899999 999999999999999999999999875432122 233444431 22 3589999999888
Q ss_pred HHHHHHH
Q 042193 678 CKYAIRE 684 (784)
Q Consensus 678 ~~~a~~~ 684 (784)
......+
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 7655443
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=4.7e-19 Score=165.45 Aligned_cols=130 Identities=48% Similarity=0.830 Sum_probs=118.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcC-CeEEEeehhhhhcCCCCCCchH
Q 042193 224 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTNGE 302 (784)
Q Consensus 224 vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 302 (784)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++....+..+|+.+.... |+++||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998889999999999999998887 9999999999999887555666
Q ss_pred HHHHHHHHHHHHhhccccC-CcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCC
Q 042193 303 VERRIVSQLLTLMDGLKSR-AHVVVMGATNRPNSIDPALRRFGRFDREIDIGV 354 (784)
Q Consensus 303 ~~~~v~~~Ll~~ld~~~~~-~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~ 354 (784)
....+.++|+..++..... .++++|++||.++.+++.+.| +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999987765 569999999999999999998 89999998863
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=2.5e-17 Score=173.50 Aligned_cols=211 Identities=18% Similarity=0.304 Sum_probs=157.2
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCC---ceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEechh
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP---KGILLYGPPGTGKTLIARAVANETG-------AFFFLINGPE 256 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~---~~vLL~GppGtGKTtla~~la~~l~-------~~~~~v~~~~ 256 (784)
.+++|+++++++|++++.+ ...++..+..|+.++ .+++|+||||||||++|+++|+.+. .+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 445567777777543 4599999999999999999998752 3578999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC--
Q 042193 257 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN-- 334 (784)
Q Consensus 257 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~-- 334 (784)
+.+.+.|+++..+..+|+.+. +++|||||++.+...++. ......+...|+..|+... ..++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHH
Confidence 999999988888888888764 469999999999754322 2344677888888887543 4567777765321
Q ss_pred ---CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC--cccchhhhHHHH----h--cCCCc-HHHHHHHHHHHH
Q 042193 335 ---SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK--LAEDVDLERVAR----D--THGYV-GADLAALCTEAA 402 (784)
Q Consensus 335 ---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--~~~~~~l~~la~----~--t~g~~-~~dl~~l~~~a~ 402 (784)
.++|++++ ||+..++|+.++.+++.+|+..++.... +.++. ...+.. . ...|. ++++..++..+.
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34688988 9999999999999999999998876543 33332 222222 1 23444 688989888887
Q ss_pred HHHHHh
Q 042193 403 LQCIRE 408 (784)
Q Consensus 403 ~~~~~~ 408 (784)
.+...+
T Consensus 252 ~~~~~r 257 (287)
T CHL00181 252 MRQANR 257 (287)
T ss_pred HHHHHH
Confidence 765544
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=2.4e-17 Score=173.82 Aligned_cols=210 Identities=20% Similarity=0.304 Sum_probs=156.2
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEechhh
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGTGKTLIARAVANETG-------AFFFLINGPEI 257 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtla~~la~~l~-------~~~~~v~~~~l 257 (784)
+++|+++.+++|.+++.+ ...++.+..+|+.+ +.+++|+||||||||++|+++++.+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999888 56677777788764 45899999999999999999998763 26889999999
Q ss_pred hhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC--C-
Q 042193 258 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP--N- 334 (784)
Q Consensus 258 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~--~- 334 (784)
.+.+.|+++..++.+|+.+. +++|||||++.+.+.+.. ......+...|+..|+.. ...++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 88888988888888888764 369999999999654322 234456778888888753 3567777776532 2
Q ss_pred --CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc--ccchhhhHHHHh-----c-CCC-cHHHHHHHHHHHHH
Q 042193 335 --SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL--AEDVDLERVARD-----T-HGY-VGADLAALCTEAAL 403 (784)
Q Consensus 335 --~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~--~~~~~l~~la~~-----t-~g~-~~~dl~~l~~~a~~ 403 (784)
.++|++++ ||...|+++.++.+++.+|++.++..... ..+ ....+... . +.+ +++.+..++..+..
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~-a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE-AEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH-HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 24789988 99999999999999999999988766432 222 12233322 1 122 35778888887766
Q ss_pred HHHHh
Q 042193 404 QCIRE 408 (784)
Q Consensus 404 ~~~~~ 408 (784)
+...+
T Consensus 252 ~~~~r 256 (284)
T TIGR02880 252 RQANR 256 (284)
T ss_pred HHHHH
Confidence 55443
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=8.6e-17 Score=168.43 Aligned_cols=176 Identities=23% Similarity=0.318 Sum_probs=132.3
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCC---CCceEEEECCCCCcHHHHHHHHHHHh-------CCcEEEEech
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGTGKTLIARAVANET-------GAFFFLINGP 255 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtla~~la~~l-------~~~~~~v~~~ 255 (784)
+++++|+++++++|++++.++... ......|+. ...+++|+|||||||||+|+++|+.+ ...++.+++.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 222334543 23569999999999999999999875 2357888999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC--
Q 042193 256 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP-- 333 (784)
Q Consensus 256 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~-- 333 (784)
++.+.+.|+....++.+|+.+. +++|||||+|.+..... .......+..|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998764 46999999999974321 1233456677888887643 345555444322
Q ss_pred ---CCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC
Q 042193 334 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK 372 (784)
Q Consensus 334 ---~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~ 372 (784)
..++|++++ ||...+.++.++.+++.+|++.++....
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 236788887 8988999999999999999998876543
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=2.2e-17 Score=162.07 Aligned_cols=188 Identities=27% Similarity=0.393 Sum_probs=124.7
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 535 (784)
.-+++|+.|+++++..+.-.+..... .-.+..+++||||||+||||||+.+|++++.+|..++++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 34689999999999987655442111 112345799999999999999999999999999998887542
Q ss_pred CcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----------------CCCc
Q 042193 536 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----------------AKKT 599 (784)
Q Consensus 536 g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----------------~~~~ 599 (784)
....+..++..... ..||||||||++.. .+...|+..|+... +..+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12334445555443 46999999999753 35677788887532 1245
Q ss_pred EEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHH
Q 042193 600 VFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEICQR 676 (784)
Q Consensus 600 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~sg~di~~l~~~ 676 (784)
..+||||++...|.+.|.. ||..+..+..++.++..+|++...+..++.-+. ...++|..+.| +++=.-++++.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 8899999999999999998 999888999999999999999988887766433 36788888887 55444445554
No 88
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2e-16 Score=168.17 Aligned_cols=202 Identities=25% Similarity=0.331 Sum_probs=146.7
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcch
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 264 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~ 264 (784)
+|+.++=-.+.+++|.+-+....+..+.++..|....+|.|||||||||||+++.|+|+.++..++-++-.++...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n---- 274 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD---- 274 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc----
Confidence 4455554456677777777777788899999999999999999999999999999999999998887775544321
Q ss_pred hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---H----HHHHHHHHHHHHhhccccCC--cEEEEEEcCCCCC
Q 042193 265 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---E----VERRIVSQLLTLMDGLKSRA--HVVVMGATNRPNS 335 (784)
Q Consensus 265 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~vivI~atn~~~~ 335 (784)
. .++.++-... ..+||+|++||+-+.-++.... . ...-..+.||+.+|++.+.+ .-++|.|||.++.
T Consensus 275 -~-dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 275 -S-DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred -H-HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 1 2666665543 3479999999987653221111 0 11234678999999998766 6788889999999
Q ss_pred CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCC--CcHHHHHH
Q 042193 336 IDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHG--YVGADLAA 396 (784)
Q Consensus 336 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g--~~~~dl~~ 396 (784)
+||||.||||.|.+|+++.-+.++-..+...++..-. +..-..++.+..++ .+++++..
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 9999999999999999999999888877777664321 12223344443333 35666543
No 89
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.8e-16 Score=162.59 Aligned_cols=176 Identities=31% Similarity=0.559 Sum_probs=132.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCC-eEEEeehhhhhcCCCCC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP-SIIFIDEIDSIAPKREK 298 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p-~il~iDEid~l~~~~~~ 298 (784)
+-++||+|||||||||++|+.||...|..+-...|.++.- .-.+.-..+..+|+.+..... -+|||||.|.++-.++.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 4568999999999999999999999999887777766532 122445678999999987655 46799999988777655
Q ss_pred Cc-hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc---
Q 042193 299 TN-GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA--- 374 (784)
Q Consensus 299 ~~-~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~--- 374 (784)
.. ++..+..++.|+-.-. .+...++++.+||+|..+|-++.. |++..++|+.|.+++|..+|..++.++.+.
T Consensus 462 tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 32 3344444454442222 233467788899999999999987 999999999999999999998776543211
Q ss_pred ------------------------cchhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 375 ------------------------EDVDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 375 ------------------------~~~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
.+..+.+.+..|+||+|.+|..|+..
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 01125678899999999999988754
No 90
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=8e-16 Score=166.64 Aligned_cols=232 Identities=23% Similarity=0.311 Sum_probs=164.5
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccC
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFG 536 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 536 (784)
..|+++.|.+++++.+...+..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 4789999999999988776643111 123456799999999999999999999999888777766432
Q ss_pred cchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----------------CCCcE
Q 042193 537 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----------------AKKTV 600 (784)
Q Consensus 537 ~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----------------~~~~v 600 (784)
....+..++.... .++++||||||.+... .. +.|...|+... ...++
T Consensus 89 -~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~-----------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 -KPGDLAAILTNLE--EGDVLFIDEIHRLSPV-----------VE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -ChHHHHHHHHhcc--cCCEEEEecHhhcchH-----------HH---HHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 1223444555443 3579999999987531 12 22333343221 11347
Q ss_pred EEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 042193 601 FIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEICQRACK 679 (784)
Q Consensus 601 ~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~sg~di~~l~~~a~~ 679 (784)
.+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+...++.-+ ..+..+++.+.|.- +.+..+++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 889999999999999987 99999999999999999999998877655432 23788898888744 677778877665
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccC---CCCHHHHHHHHHHHHHHh
Q 042193 680 YAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR---SVSDADIRKYQLFAQTLQ 746 (784)
Q Consensus 680 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~---s~~~~~~~~~~~~~~~~~ 746 (784)
.|..+. ...|+.+++..+++.+.. .+++.+.+.+..+.+.|.
T Consensus 229 ~a~~~~-------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 229 FAQVKG-------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHcC-------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 554321 125888888888887644 356667776666766664
No 91
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6e-17 Score=163.29 Aligned_cols=149 Identities=31% Similarity=0.441 Sum_probs=125.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEechhhhhhhcchhHHHHHHHHHHHHhc---CC--eEE
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKN---AP--SII 284 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~---~p--~il 284 (784)
...+-+||+||||||||+|++++|+.+. ...+.+|+..++++|.+++.+.+..+|++.... .. -.+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 3456699999999999999999999874 346899999999999999999999999987552 22 346
Q ss_pred EeehhhhhcCCCCCC----chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHH
Q 042193 285 FIDEIDSIAPKREKT----NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 360 (784)
Q Consensus 285 ~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R 360 (784)
+|||++++...|... .....-|+++.+++++|.++...+|++++|+|-.+.+|.|+.. |-|-..++++|+...+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 799999998665221 1123468999999999999999999999999999999999976 8888899999999999
Q ss_pred HHHHHHHHc
Q 042193 361 LEVFRIHTK 369 (784)
Q Consensus 361 ~~il~~~~~ 369 (784)
.+|++....
T Consensus 333 ~~Ilkscie 341 (423)
T KOG0744|consen 333 YEILKSCIE 341 (423)
T ss_pred HHHHHHHHH
Confidence 999986543
No 92
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=1.8e-16 Score=189.50 Aligned_cols=203 Identities=27% Similarity=0.397 Sum_probs=142.5
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch--------
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-------- 531 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-------- 531 (784)
+++.|++.+++.+.+++..+... +-.....++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999998876543211 111223699999999999999999999999999998765432
Q ss_pred -hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC-----CC--------CC
Q 042193 532 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG-----MN--------AK 597 (784)
Q Consensus 532 -~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-----~~--------~~ 597 (784)
..|+|.....+.+.|..+....| |+||||||.+..... + ...+.||..||. +. ..
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-------~---~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-------G---DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-------C---CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 36788888888889988877666 899999999875321 1 123556666653 11 12
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh-----ccCCCCC------ccCHHHHHH-HcCCC
Q 042193 598 KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL-----RKSPISP------DVDLSALAR-YTHGF 665 (784)
Q Consensus 598 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~-----~~~~~~~------~~~~~~la~-~~~g~ 665 (784)
.++++|+|||.++.|++++++ ||+ +|.|+.|+.+++.+|++.++ +..++.. +..+..+++ ++..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 578999999999999999999 995 78999999999999998876 2223321 122445554 23334
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 042193 666 SGADITEICQRACKYAIR 683 (784)
Q Consensus 666 sg~di~~l~~~a~~~a~~ 683 (784)
..++|+..+...+..+..
T Consensus 539 g~R~l~r~i~~~~~~~~~ 556 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAV 556 (775)
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 445555555544444433
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=1.2e-15 Score=164.09 Aligned_cols=230 Identities=21% Similarity=0.289 Sum_probs=156.5
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCc
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGE 537 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~ 537 (784)
+|+++.|++++++.|...+..... .-..+.+++|+||||||||++|+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 588999999999998877643211 1123456999999999999999999999988876665543221
Q ss_pred chHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----------------CCCcEE
Q 042193 538 SEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----------------AKKTVF 601 (784)
Q Consensus 538 ~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----------------~~~~v~ 601 (784)
...+...+... ..+.++|||||+.+... ..+.|+..|+... ...+++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 11222333332 24579999999987542 2233444443221 123478
Q ss_pred EEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 042193 602 IIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 602 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~ 680 (784)
+|++||++..+++++.+ ||...+.+++|+.+++.++++..+...++.- +..+..+++.+.|+- +.+..++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 99999999999999988 9998999999999999999998887654432 233778898888855 5667787766554
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHH
Q 042193 681 AIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR---RSVSDADIRKYQLFAQTL 745 (784)
Q Consensus 681 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~---~s~~~~~~~~~~~~~~~~ 745 (784)
|.... ...|+.+++..++..+. ...++.+......+...+
T Consensus 209 a~~~~-------------------------~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~ 251 (305)
T TIGR00635 209 AQVRG-------------------------QKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQF 251 (305)
T ss_pred HHHcC-------------------------CCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh
Confidence 43221 12478888888887652 234455555444455555
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=3.2e-16 Score=186.39 Aligned_cols=242 Identities=21% Similarity=0.261 Sum_probs=165.2
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKG 527 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~ 527 (784)
.++++.|.++..+.+.+.+. .....+++|+||||||||++++++|..+ +..++.++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 45667777766665544332 2234579999999999999999999987 677888888
Q ss_pred ccch--hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEe
Q 042193 528 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA 605 (784)
Q Consensus 528 ~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~a 605 (784)
..+. .+|.|+.++.++.+|+.+....++||||||||.+.+.+..+. + ...+.+.|...|. .+.+.+||+
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~----~-~~~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG----G-SMDASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC----c-cHHHHHHHHHHHh----CCCeEEEEe
Confidence 8887 578999999999999999877889999999999987643211 1 1223344444443 457899999
Q ss_pred cCCC-----CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----CCC-CccCHHHHHHHcCCCCH-----HHH
Q 042193 606 TNRP-----DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PIS-PDVDLSALARYTHGFSG-----ADI 670 (784)
Q Consensus 606 Tn~~-----~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~~g~sg-----~di 670 (784)
||.. ..+|+|+.| ||. .|+++.|+.+++.+|++.....+ ++. .+..+..++..+..|-+ ..-
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 9974 357999999 997 79999999999999999766542 211 22335666666655432 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHH
Q 042193 671 TEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR----RSVSDADIRKYQLFAQTL 745 (784)
Q Consensus 671 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~----~s~~~~~~~~~~~~~~~~ 745 (784)
..++.+|+....-+ .. ......|+.+|+..++.... ..++.++...+..+.+.+
T Consensus 395 i~lld~a~a~~~~~---~~------------------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 395 IDVIDEAGASFRLR---PK------------------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHhhhhhhcC---cc------------------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 33555555321110 00 00123589999999988763 245566666666555554
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.5e-15 Score=151.46 Aligned_cols=232 Identities=23% Similarity=0.335 Sum_probs=164.7
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 535 (784)
.-.|++..|++++|++|.-++....... ...-++|||||||.||||||+.+|++++.++-..+++-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 3467889999999999987776533322 3345699999999999999999999999999888888652
Q ss_pred CcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----------------CCCc
Q 042193 536 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----------------AKKT 599 (784)
Q Consensus 536 g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----------------~~~~ 599 (784)
....+..++...... +|+||||||++.+ ... .-|...|+.+. ...+
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~-----------~vE---E~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSP-----------AVE---EVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcCh-----------hHH---HHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 233455566655444 6999999999864 223 33445555432 1346
Q ss_pred EEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 600 VFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 600 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
..+||||.+...|...|.. ||..+..+..++.++..+|+....+.+++.-+. ...++|+++.| +++=--.+++..-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999988 999999999999999999999999887766443 36788888887 4433334666655
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHH
Q 042193 679 KYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR---RSVSDADIRKYQLFAQTL 745 (784)
Q Consensus 679 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~---~s~~~~~~~~~~~~~~~~ 745 (784)
-.|.-++ ...|+.+-..+||+.+. --+.+-+.+..+.+.++|
T Consensus 229 Dfa~V~~-------------------------~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 229 DFAQVKG-------------------------DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HHHHHhc-------------------------CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 5554322 12466666666666652 234445555555555555
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=4.4e-15 Score=145.98 Aligned_cols=183 Identities=27% Similarity=0.430 Sum_probs=119.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
+.+.+-+++++.|+++.+..+.-++....... .+-.++|||||||+||||||+.||++++..+..++++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 46778899999999999998776554322111 2345899999999999999999999999999999886542
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----c-----------CC
Q 042193 259 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----S-----------RA 322 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~-----------~~ 322 (784)
. ...+..++.... ...||||||||.+.+ .+.+.|+..|+... . -.
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 2 122334444432 357999999998853 34556777776432 1 13
Q ss_pred cEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCccc-chhhhHHHHhcCCCc
Q 042193 323 HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAE-DVDLERVARDTHGYV 390 (784)
Q Consensus 323 ~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~-~~~l~~la~~t~g~~ 390 (784)
++.+||||++...+...|+. ||.....+..++.++-..|++.....+.+.- +....++|.++.|-.
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 68899999999999999987 9988888999999999999986665555432 233677888887753
No 97
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=1.6e-15 Score=177.96 Aligned_cols=176 Identities=24% Similarity=0.308 Sum_probs=128.5
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEecccch--hcccCcchHHHHHHHHHhhhCCCeEEEEe
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFFD 560 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iD 560 (784)
...++||+||||||||++++++|... +..++.++...++ .+|.|+.+.+++.+|+.+....++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 34568999999999999999999864 4456666666555 56889999999999999988888999999
Q ss_pred ccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC-----CCCccccCCCCcccccccCCCCHHH
Q 042193 561 ELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD-----VIDPALLRPGRLDQLIYIPLPDEAS 635 (784)
Q Consensus 561 Eid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~ 635 (784)
|||.+++.++.+ +....+.+.|...+ ....+.+||+||.++ .+|+|+.| ||+ .|.++.|+.++
T Consensus 286 EIh~L~g~g~~~-----~g~~d~~nlLkp~L----~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~ 353 (758)
T PRK11034 286 EIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEE 353 (758)
T ss_pred cHHHHhccCCCC-----CcHHHHHHHHHHHH----hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHH
Confidence 999998765321 11122333332222 456799999999875 57999999 996 79999999999
Q ss_pred HHHHHHHHhccCCCCCccC-----HHHHHHHcCC-----CCHHHHHHHHHHHHHH
Q 042193 636 RLQIFKACLRKSPISPDVD-----LSALARYTHG-----FSGADITEICQRACKY 680 (784)
Q Consensus 636 r~~il~~~~~~~~~~~~~~-----~~~la~~~~g-----~sg~di~~l~~~a~~~ 680 (784)
+..||+....++....++. +...+..+.. +-+.....++.+|+..
T Consensus 354 ~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 354 TVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred HHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHh
Confidence 9999998876655444443 3333333333 3344666788888753
No 98
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=8.1e-15 Score=153.29 Aligned_cols=171 Identities=26% Similarity=0.423 Sum_probs=119.4
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccC
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFG 536 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 536 (784)
-+++++.|++.+.-.- ..+.+-+.-....+++|||||||||||+|+.||+..+..|..+++..
T Consensus 21 ~~lde~vGQ~HLlg~~----------~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEG----------KPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------- 83 (436)
T ss_pred CCHHHhcChHhhhCCC----------chHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------
Confidence 4567888887663210 11111112223456999999999999999999999999999998753
Q ss_pred cchHHHHHHHHHhhhCC----CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec--CCCC
Q 042193 537 ESEANVREIFDKARQSA----PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--NRPD 610 (784)
Q Consensus 537 ~~~~~i~~~f~~a~~~~----p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT--n~~~ 610 (784)
.+-+.++.+|++|+... ..|||+||||++... -+..||-.|+ ++.+++|||| |..-
T Consensus 84 ~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTENPsF 145 (436)
T COG2256 84 SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTENPSF 145 (436)
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCCCCCe
Confidence 35678999999996543 379999999997542 2345665554 4567777776 4446
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHh--ccCCCC------CccCHHHHHHHcCCC
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL--RKSPIS------PDVDLSALARYTHGF 665 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~--~~~~~~------~~~~~~~la~~~~g~ 665 (784)
.|.+|+++ |. +++.+.+.+.++...+++..+ ...++. ++.-+..++..++|.
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 89999998 76 467888999999999998844 223333 222366778877773
No 99
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.9e-14 Score=163.48 Aligned_cols=186 Identities=21% Similarity=0.279 Sum_probs=134.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45689999999999999877652 134556899999999999999999998753
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.++..+ ...-..++.+.+.+. .....|+||||+|.|.. ...|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHH
Confidence 133333221 112234566666543 23457999999998742 356888
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s 666 (784)
|..|+.. ..++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..++|+..+++.++.- +..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988854 3467777788888888888887 88 5889999999999999998887666542 3347778888887 5
Q ss_pred HHHHHHHHHHHHH
Q 042193 667 GADITEICQRACK 679 (784)
Q Consensus 667 g~di~~l~~~a~~ 679 (784)
.++..+++..+..
T Consensus 214 mRdALsLLdQAia 226 (830)
T PRK07003 214 MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777666553
No 100
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.4e-13 Score=159.89 Aligned_cols=161 Identities=23% Similarity=0.360 Sum_probs=108.7
Q ss_pred ccc-cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CcEEEEech
Q 042193 187 DDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG----------AFFFLINGP 255 (784)
Q Consensus 187 ~~i-~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~----------~~~~~v~~~ 255 (784)
+.+ |+.++.++++.+++.. ...++-+|+|.||+|||.++.-+++.+- ..++.++-.
T Consensus 186 dPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 344 4458888888777654 2236789999999999999999998651 223444433
Q ss_pred hhh--hhhcchhHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 256 EIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 256 ~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
.+. .++.|+.+.+++.+...+.. ....|||+||++-+........ . -..+ +++.....+..+-+||||..
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~--~d~~----nlLkp~L~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-A--IDAA----NLLKPLLARGGLWCIGATTL 325 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-H--HHHH----HhhHHHHhcCCeEEEecccH
Confidence 222 35678899999999999884 4567889999999987765421 1 1122 22222234455889988773
Q ss_pred CC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 333 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 333 ~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
-. .-+|++.+ ||+. +.++.|..+.-..||......
T Consensus 326 e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 22 34899988 8865 678899887777777655444
No 101
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8e-15 Score=161.79 Aligned_cols=164 Identities=27% Similarity=0.430 Sum_probs=127.7
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch--------
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-------- 531 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-------- 531 (784)
+|.-|++++|+.+.+++..... + |-...+-++|+||||.|||++++.+|..++..|++++-..+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-----r--gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-----R--GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-----c--ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5677999999999888753211 1 112222389999999999999999999999999998754442
Q ss_pred -hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC---------C----CCC
Q 042193 532 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG---------M----NAK 597 (784)
Q Consensus 532 -~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~---------~----~~~ 597 (784)
..|+|...-++-+.++......| +++|||||.+.. +.. +... +.||..||- + -..
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~q-----GDPa---sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQ-----GDPA---SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCC-----CChH---HHHHHhcChhhccchhhhccccccch
Confidence 46899999999999999988888 899999999973 222 1111 344444442 1 235
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 042193 598 KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 598 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~ 644 (784)
.+|++|||.|..+.|+++|+. |+. +|.++-+..++..+|-+.++
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 689999999999999999999 995 89999999999999999887
No 102
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=4.9e-14 Score=168.69 Aligned_cols=164 Identities=22% Similarity=0.332 Sum_probs=123.0
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-------- 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~-------- 258 (784)
+++.|+++.++.|.+++....... -..+..++|+||||||||++|+++|+.++.+++.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 358899999999998776532221 12345799999999999999999999999999888654321
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc-----c--------cCCcE
Q 042193 259 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL-----K--------SRAHV 324 (784)
Q Consensus 259 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 324 (784)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..+|.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24556666677778887766666 89999999998653221 124455555531 1 11478
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 325 VVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
++|+|||.++.+++++++ ||. .|+++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 884 68999999999999998764
No 103
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.6e-14 Score=158.56 Aligned_cols=185 Identities=22% Similarity=0.319 Sum_probs=134.5
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 456899999999999998876531 23456899999999999999999998764
Q ss_pred --------------cEEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHH
Q 042193 521 --------------NFVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADR 582 (784)
Q Consensus 521 --------------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 582 (784)
.++.++... ...-..++++.+... .....|+||||+|.+.. .
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------H 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------H
Confidence 222332221 112344565555543 34467999999998742 3
Q ss_pred HHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHH
Q 042193 583 VLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARY 661 (784)
Q Consensus 583 ~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~ 661 (784)
..|.||..|+.- ..++++|.+||.++.|.+.+++ |+ ..+.|..++.++..+.++..+...++..+. .+..|++.
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 568899998853 3466777788888899899987 87 688999999999999988887766555333 36677887
Q ss_pred cCCCCHHHHHHHHHHHH
Q 042193 662 THGFSGADITEICQRAC 678 (784)
Q Consensus 662 ~~g~sg~di~~l~~~a~ 678 (784)
++| +.++..+++..+.
T Consensus 215 A~G-s~RdALsLLdQai 230 (700)
T PRK12323 215 AQG-SMRDALSLTDQAI 230 (700)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 776 6777777776554
No 104
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.8e-14 Score=157.71 Aligned_cols=162 Identities=30% Similarity=0.419 Sum_probs=128.0
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch------
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL------ 531 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~------ 531 (784)
.|.-|++++|+.+.+++..... . ...+| ++|+||||+|||+|++.+|..++..|++++-.-+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l--------~-~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKL--------T-KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHH--------h-ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 4567999999999887753211 1 11222 89999999999999999999999999999765442
Q ss_pred ---hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCC-------------C
Q 042193 532 ---TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGM-------------N 595 (784)
Q Consensus 532 ---~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~-------------~ 595 (784)
..|+|...-++-+-+.+|....| ++++||||.+...-. |.. -+.||..||-- .
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-------GDP---aSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-------GDP---ASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-------CCh---HHHHHhhcCHhhcCchhhccccCcc
Confidence 46899999999999999999988 999999999875311 111 14455555521 1
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 042193 596 AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 596 ~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~ 644 (784)
...+|++|+|.|..+.|+.+|+. |+. +|.++-+..++..+|-+.++
T Consensus 463 DLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 463 DLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred chhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 34689999999999999999999 995 99999999999999999887
No 105
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.6e-14 Score=156.04 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=132.5
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+.+.|...+.. -..+..+||+||+|||||++|+++|..++..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 45689999999999988776652 1234568999999999999999999987642
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+. ...++.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 23333211 111234555544433 3456799999999874 3467888
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s 666 (784)
|..|+. ....+++|.+|+.++.|.+++++ |+ .++.|.+++.++..+.++..++..++. .+..+..+++.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 988875 34577888888889999999988 87 367888888888888888888776654 23347788888887 5
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.++.-+++..+.
T Consensus 216 ~RdAL~lLeq~i 227 (484)
T PRK14956 216 VRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHH
Confidence 667777776554
No 106
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=5.9e-14 Score=154.23 Aligned_cols=222 Identities=20% Similarity=0.276 Sum_probs=146.8
Q ss_pred ccchhhhhhhhccccccccCChhh-hhh-ccc-CCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-hcccCc
Q 042193 462 IGGLETVKRELQETVQYPVEHPEK-FEK-FGL-SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-TMWFGE 537 (784)
Q Consensus 462 i~g~~~~k~~l~~~i~~~~~~~~~-~~~-~~~-~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g~ 537 (784)
|.|++.+++.|...+..+...... ... -.. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999887665322111100 000 011 1345699999999999999999999999999999998875 468887
Q ss_pred chH-HHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEE
Q 042193 538 SEA-NVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVF 601 (784)
Q Consensus 538 ~~~-~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~ 601 (784)
... .+..+++.+ ....++|+||||||.+...+...+....-....+++.||+.|++.. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 544 345555432 2346789999999999876433222222233568999999998631 122456
Q ss_pred EEEecCCCC----------------------------------------------------CCCccccCCCCcccccccC
Q 042193 602 IIGATNRPD----------------------------------------------------VIDPALLRPGRLDQLIYIP 629 (784)
Q Consensus 602 vi~aTn~~~----------------------------------------------------~ld~allr~gRf~~~i~~~ 629 (784)
+|.|+|... -+.|+++ ||+|.+++|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 777776510 0245555 4999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCCCc---cCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 630 LPDEASRLQIFKA----CLR-------KSPISPD---VDLSALARY--THGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 630 ~p~~~~r~~il~~----~~~-------~~~~~~~---~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
+.+.++..+|+.. .++ ..++.-. .-+..|++. ..++-.+.|+.+++......+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999973 222 2222211 225667764 345667888888888777776554
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.56 E-value=3.2e-14 Score=160.66 Aligned_cols=173 Identities=22% Similarity=0.345 Sum_probs=122.5
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 568 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~ 568 (784)
..+++||||+|+|||+|++++++++ +..++++++.++...+..........-|..... .+++|+||||+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3569999999999999999999986 466889999888766544332211222332222 4679999999998653
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHH
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~ 643 (784)
+....+|+..++.+....+.+||+++..|.. +++++.+ ||. .++.+++|+.++|.+|++..
T Consensus 227 ------------~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 ------------ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred ------------HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1234556666665544455677777777765 6788876 886 58999999999999999999
Q ss_pred hccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 644 LRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 644 ~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
++..++. ++.-++.||+...| +.++|..++......|.
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 8765543 22337778877665 77888888777665554
No 108
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.56 E-value=4.6e-14 Score=157.53 Aligned_cols=173 Identities=21% Similarity=0.339 Sum_probs=121.5
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchH-HHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+..+ .+.+|+||||+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3568999999999999999999976 5678899988876654432211 1222222222 256999999999864
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHH
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~il~~ 642 (784)
+ .....+|+..++.+....+.+||+++..|+. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~------------~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 K------------ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred C------------HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 3 1233455666655444445677777777755 5677776 886 5799999999999999999
Q ss_pred HhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 643 CLRKSPISP-DVDLSALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 643 ~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
.++..++.- +..+..||+...+ +.+++..++......|..
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 997765542 3337788877665 778888888877666543
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.55 E-value=5.6e-14 Score=140.34 Aligned_cols=182 Identities=24% Similarity=0.397 Sum_probs=136.3
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
.+.+-.+++..|.++.++++.=++.....+. ....++||+||||.||||||+.+|++++..+...+|+-+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 3456678999999999998876665432222 34568999999999999999999999999998888876632
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCc
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK----------------SRAH 323 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 323 (784)
...+..++.... ..+|+||||||.+.+. +.+.|...|+.+. .-++
T Consensus 91 ------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNLE--EGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcCC--cCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 233444555433 3479999999999754 3345556665432 1247
Q ss_pred EEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCccc-chhhhHHHHhcCCCc
Q 042193 324 VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAE-DVDLERVARDTHGYV 390 (784)
Q Consensus 324 vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~-~~~l~~la~~t~g~~ 390 (784)
+.+||||.+...+...|+. ||.....+..++.++-.+|+......+.+.- +....++|.++.|-.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 8999999999999999987 9999899999999999999987666555432 233667888888754
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.53 E-value=4.7e-13 Score=145.04 Aligned_cols=192 Identities=23% Similarity=0.375 Sum_probs=134.4
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
.+.+..|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 456668999999999999988777532111 134568999999999999999999999998887776654321
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCc
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK----------------SRAH 323 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 323 (784)
...+..++... ..++++||||+|.+... . .+.|...|+... ...+
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------V----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchH-------H----HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12333444432 34679999999988532 1 112333333211 1134
Q ss_pred EEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHH
Q 042193 324 VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEA 401 (784)
Q Consensus 324 vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 401 (784)
+.+|++|+++..+++.+++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.|.. ..+..+++.+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 7889999999999999987 888889999999999999999776654432 2334788888888875 3444444433
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.4e-13 Score=150.16 Aligned_cols=183 Identities=19% Similarity=0.303 Sum_probs=128.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+... ..+.++||+|||||||||+|+++|..++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 456899999999988887765531 24556999999999999999999998753
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.++++. ...-..++.+.+.+.. ....|+||||+|.+.. ..++.|
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHH
Confidence 344444421 1122345665555442 2346999999998743 245778
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s 666 (784)
+..|+... ..+++|++|+.|+.+.+++.+ |+. ++.|++|+.++...+++..++..++.- +..+..|++.+.| +
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 88887543 356666666678889999988 884 899999999999999998887655432 2337778887765 4
Q ss_pred HHHHHHHHHH
Q 042193 667 GADITEICQR 676 (784)
Q Consensus 667 g~di~~l~~~ 676 (784)
.+.+.+.+..
T Consensus 212 lR~aln~Le~ 221 (472)
T PRK14962 212 LRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 112
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.51 E-value=1.7e-13 Score=156.68 Aligned_cols=210 Identities=25% Similarity=0.339 Sum_probs=143.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSV 525 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v 525 (784)
..+|+++.|.+...+.+...+.. ..+.+++|+||||||||++|+++...+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 35688899999888887654321 124569999999999999999998753 3578888
Q ss_pred ecccc-------hhcccCcchHHH----------------HHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHH
Q 042193 526 KGPEL-------LTMWFGESEANV----------------REIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADR 582 (784)
Q Consensus 526 ~~~~l-------~~~~~g~~~~~i----------------~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 582 (784)
++... ....++.....+ ...+..+ ...+||||||+.+.. .
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~--------------~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP--------------V 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH--------------H
Confidence 87531 111111100000 0012222 235999999998753 3
Q ss_pred HHHHHHHHhhCCC---------------------------CCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHH
Q 042193 583 VLNQLLTEMDGMN---------------------------AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEAS 635 (784)
Q Consensus 583 ~l~~ll~~ld~~~---------------------------~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~ 635 (784)
.++.||..|+... ..+-.+|++|||.|+.|+|++++ |+. .++|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 5566666664310 11225566777889999999998 884 78899999999
Q ss_pred HHHHHHHHhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccc
Q 042193 636 RLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEI 714 (784)
Q Consensus 636 r~~il~~~~~~~~~~~~-~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 714 (784)
+.+|++..+++.++.-+ ..++.++.++ .+++++.++++.|+..|..+. ...|
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~-------------------------~~~I 320 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG-------------------------RKRI 320 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------------------------CcEE
Confidence 99999999987765422 2356666655 389999999999998776532 1258
Q ss_pred cHHHHHHHHhh
Q 042193 715 TAAHFEESMKY 725 (784)
Q Consensus 715 ~~~~~~~al~~ 725 (784)
+.+|++.++..
T Consensus 321 t~~dI~~vl~~ 331 (531)
T TIGR02902 321 LAEDIEWVAEN 331 (531)
T ss_pred cHHHHHHHhCC
Confidence 99999999864
No 113
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.51 E-value=6.9e-13 Score=142.63 Aligned_cols=187 Identities=24% Similarity=0.357 Sum_probs=128.9
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcch
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 264 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~ 264 (784)
+|+++.|.++.++.+..++......+ ..+.+++|+||||||||++|+++|++++..+..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 47889999999999988775422211 23567999999999999999999999988776665543221
Q ss_pred hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCcEEEEE
Q 042193 265 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK----------------SRAHVVVMG 328 (784)
Q Consensus 265 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~vivI~ 328 (784)
...+...+... ..+.++||||++.+.+.. .+.|...++... ...++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222223222 346799999999886431 122333433221 123478899
Q ss_pred EcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHH
Q 042193 329 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEA 401 (784)
Q Consensus 329 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 401 (784)
+|+++..+++++++ ||...+.+..|+.++..++++.......+. ++..++.++..+.|+. ..+..++..+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 99999999999987 888888999999999999999776543332 2334778889888876 3344555544
No 114
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.51 E-value=9.1e-14 Score=167.01 Aligned_cols=164 Identities=21% Similarity=0.353 Sum_probs=122.8
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKG 527 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~ 527 (784)
.++.+.|.+...+.+.+.+. .....+++|+||||||||++++.+|..+ +.+++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 35566777665444443322 2334568999999999999999999987 678888888
Q ss_pred ccch--hcccCcchHHHHHHHHHhhh-CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 528 PELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 528 ~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
..+. .+|.|+.++.++.+|+.... ..++||||||||.+.+.++.. +. ....+.|... ...+.+.+||
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----~~-~d~~~~lkp~----l~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GA-MDAGNMLKPA----LARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----cc-hhHHHHhcch----hhcCCCeEEE
Confidence 7765 56889999999999998644 568999999999998764321 11 1222333322 2456899999
Q ss_pred ecCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC
Q 042193 605 ATNRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 647 (784)
Q Consensus 605 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 647 (784)
||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+...+
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 999886 48999999 997 68899999999999998877554
No 115
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.51 E-value=3.8e-13 Score=150.13 Aligned_cols=180 Identities=27% Similarity=0.442 Sum_probs=124.5
Q ss_pred cccccccchhhhhhh---hccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 457 VSWEDIGGLETVKRE---LQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
-+++++.|++.+... |...+.. ....+++|+||||||||++|+++|...+..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 346778888877554 5554431 123469999999999999999999999999999887532
Q ss_pred ccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecC--
Q 042193 534 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN-- 607 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn-- 607 (784)
....++.+++.+. .....++||||+|.+.. ...+.|+..++. ..+++|++|+
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 2345566666553 22457999999998743 234566666653 3566666653
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC--CC-C-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 608 RPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--PI-S-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 608 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~--~~-~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
....+++++++ |+ .++.|++|+.++...+++..+... ++ . .+..+..+++.+.| ..+.+.+++..++
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34578999998 88 688999999999999999877542 21 1 12236677887755 5566666666654
No 116
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.2e-13 Score=154.86 Aligned_cols=185 Identities=21% Similarity=0.281 Sum_probs=130.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcE-------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 522 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~------------- 522 (784)
..+|++|.|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.+.+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 457899999999999988776521 3345579999999999999999999876431
Q ss_pred -----------EEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 523 -----------VSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 523 -----------i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
+.+++.+ ...-..+|.+.+... .....|+||||+|.+. ...++.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1121110 011233555544433 3345799999999873 4467899
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s 666 (784)
|..|+... ..+.+|.+|+.+..|-+.+++ |+ .++.|.+++.++....|+..++..++.-+ ..+..|++.+.| +
T Consensus 140 LKtLEEPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEEPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 355555567777778888887 77 57899999999999888887766554322 337778888777 6
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.+++.++|..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 677777876655
No 117
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=2.9e-13 Score=150.87 Aligned_cols=211 Identities=12% Similarity=0.194 Sum_probs=137.0
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcC
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 570 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 570 (784)
..+++||||+|+|||+|++++++++ +..+++++..++...+.......-...|..... .+++++||||+.+.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k-- 217 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK-- 217 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC--
Confidence 4569999999999999999999975 578888888777654432221111223444332 4579999999997642
Q ss_pred CCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC---CCCccccCCCCcc--cccccCCCCHHHHHHHHHHHhc
Q 042193 571 ASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---VIDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 645 (784)
Q Consensus 571 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~~~ 645 (784)
.....+|+..++.+....+.+|+++++.|. .+++.+.+ ||. .++.+++|+.++|..|++..++
T Consensus 218 ----------~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 218 ----------GATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred ----------hhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 112334444444433334567777766664 45788887 885 7889999999999999999988
Q ss_pred cCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHH
Q 042193 646 KSPISPDVD-LSALARYTHGFSGADITEICQRACKY-AIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESM 723 (784)
Q Consensus 646 ~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al 723 (784)
..++.-+.+ ++.|+....+ +.+++.+.+...+.. |.... . ...|+.+.+++++
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-~-----------------------~~~i~~~~~~~~l 340 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-S-----------------------HQLLYVDDIKALL 340 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-h-----------------------CCCCCHHHHHHHH
Confidence 766543333 5667776554 556777666655432 22211 1 1257888888888
Q ss_pred hhc---cC--CCCHHHHHHHHHHHHHHh
Q 042193 724 KYA---RR--SVSDADIRKYQLFAQTLQ 746 (784)
Q Consensus 724 ~~~---~~--s~~~~~~~~~~~~~~~~~ 746 (784)
+.+ .+ .++.+.|.. .+.+.|+
T Consensus 341 ~~~~~~~~~~~~t~~~I~~--~Va~~~~ 366 (445)
T PRK12422 341 HDVLEAAESVRLTPSKIIR--AVAQYYG 366 (445)
T ss_pred HHhhhcccCCCCCHHHHHH--HHHHHhC
Confidence 754 22 467776663 4555554
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.50 E-value=7.4e-14 Score=167.20 Aligned_cols=183 Identities=21% Similarity=0.316 Sum_probs=129.9
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC----------CcEEEEec
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFVSVKG 527 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~----------~~~i~v~~ 527 (784)
.++.+.|.++..+.+.+.+. .....+++|+||||||||++++.+|..+. ..++.++.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 45677777766444433322 22345689999999999999999999762 45677777
Q ss_pred ccch--hcccCcchHHHHHHHHHhhh-CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 528 PELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 528 ~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
..+. ..|.|+.++.++.+|+.+.. ..++||||||||.+.+.++..+ . ..+-+.|+..| ..+.+.+||
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-----~-~d~~n~Lkp~l----~~G~l~~Ig 321 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-----Q-GDAANLLKPAL----ARGELRTIA 321 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-----c-ccHHHHhhHHh----hCCCeEEEE
Confidence 6665 36889999999999999864 4678999999999987654221 1 11223333333 456789999
Q ss_pred ecCCC-----CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC----CC-CccCHHHHHHHcCCCC
Q 042193 605 ATNRP-----DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP----IS-PDVDLSALARYTHGFS 666 (784)
Q Consensus 605 aTn~~-----~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~la~~~~g~s 666 (784)
||+.. -.+|+||.| ||. .|.++.|+.+++..||+.+.+.+. +. .+..+..++..+.+|-
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99874 348999999 995 899999999999999876664432 21 2333667777776653
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=1.8e-13 Score=152.99 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=117.9
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcch-HHHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~-~~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
..+++||||+|+|||+|++++++++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3459999999999999999999975 457888888887665532211 11222 3333333578999999998865
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHH
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI---DPALLRPGRLD--QLIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~il~~ 642 (784)
. .....+|+..++.+....+.+||++++.|..+ ++.+.+ ||. .++.+++||.++|..|++.
T Consensus 209 ~------------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 209 K------------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred c------------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHH
Confidence 3 11234455555554444556777777777654 567776 664 6788999999999999999
Q ss_pred HhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 643 CLRKSPISP-DVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 643 ~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
.++..++.- +.-+..||+...| +.++|..++......+.
T Consensus 275 ~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 275 MLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 987554432 2237778877665 77788887776654443
No 120
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=3e-13 Score=147.65 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=146.9
Q ss_pred cccchhhhhhhhccccccccCChhh----hhhcccC-CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-hcc
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEK----FEKFGLS-PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-TMW 534 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~----~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-~~~ 534 (784)
.+.|++++++.+..++......... ...-+.. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3789999999887665211111000 0000111 134699999999999999999999999999999888765 358
Q ss_pred cCcc-hHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC-----------CC
Q 042193 535 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA-----------KK 598 (784)
Q Consensus 535 ~g~~-~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~-----------~~ 598 (784)
+|.. +..+..+++.+ ....++|+||||||.+..++...+....-....+++.||+.|+|... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8875 44455555433 23456899999999998765432211122234688999999986421 23
Q ss_pred cEEEEEecCCC---------------------------C-----------------------CCCccccCCCCccccccc
Q 042193 599 TVFIIGATNRP---------------------------D-----------------------VIDPALLRPGRLDQLIYI 628 (784)
Q Consensus 599 ~v~vi~aTn~~---------------------------~-----------------------~ld~allr~gRf~~~i~~ 628 (784)
+.++|.|+|.. + -+.|+++. |+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 56888888861 0 02366664 99999999
Q ss_pred CCCCHHHHHHHHHHH----hcc-------CCCCCc---cCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 629 PLPDEASRLQIFKAC----LRK-------SPISPD---VDLSALARY--THGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 629 ~~p~~~~r~~il~~~----~~~-------~~~~~~---~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
.+.+.++..+|+... ++. .++.-. .-+..||+. ...+-.+.|+.+++...+.++.+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998752 221 122211 225667765 345667888888888777766554
No 121
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.50 E-value=4.2e-13 Score=140.61 Aligned_cols=174 Identities=28% Similarity=0.463 Sum_probs=121.2
Q ss_pred hhcCCCCcccccChHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 042193 179 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP 255 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~ 255 (784)
+++.+-++++++|+++.+.. |+.++.. ..-.+++|||||||||||||+.||+.++..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 46677789999999887633 4555543 2334799999999999999999999999999999863
Q ss_pred hhhhhhcchhHHHHHHHHHHHHhc----CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcC
Q 042193 256 EIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331 (784)
Q Consensus 256 ~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn 331 (784)
. ..-+.++.+++.++.. ...|||+||||.+....+ ..|+..++ ++.+++||+|.
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATT 140 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccC
Confidence 2 2345788888888553 347999999999865432 24555553 46788887764
Q ss_pred --CCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH--cCCCcc------cchhhhHHHHhcCCCc
Q 042193 332 --RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT--KNMKLA------EDVDLERVARDTHGYV 390 (784)
Q Consensus 332 --~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~--~~~~~~------~~~~l~~la~~t~g~~ 390 (784)
+--.+.++|++..+ .+++...+.++-..+++.-+ ....+. ++.-++.++..+.|-.
T Consensus 141 ENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 141 ENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred CCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 44578999998433 36788888888888877522 111222 2333556666666643
No 122
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.50 E-value=4.4e-13 Score=147.99 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=127.1
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---------CcEEEEecccc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFVSVKGPEL 530 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---------~~~i~v~~~~l 530 (784)
+++.|-+...+.|...+..... + ..+.+++++||||||||+++++++..+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3566777766666655432111 1 2345699999999999999999998652 46788887654
Q ss_pred hhc----------cc--Cc-------c-hHHHHHHHHHhh-hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHH
Q 042193 531 LTM----------WF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLT 589 (784)
Q Consensus 531 ~~~----------~~--g~-------~-~~~i~~~f~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 589 (784)
.+. .. |. + .+....+++... ...+.|++|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 221 10 11 1 222344555443 345679999999999731 1235566655
Q ss_pred HhhCC-CCCCcEEEEEecCCCC---CCCccccCCCCcc-cccccCCCCHHHHHHHHHHHhccC---CCCCccCHHHHH--
Q 042193 590 EMDGM-NAKKTVFIIGATNRPD---VIDPALLRPGRLD-QLIYIPLPDEASRLQIFKACLRKS---PISPDVDLSALA-- 659 (784)
Q Consensus 590 ~ld~~-~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i~~~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la-- 659 (784)
..+.. ....++.+|+++|.++ .+++.+.+ ||. ..++|++|+.++..+|++..++.. ..-.+.-+..++
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 42211 2235789999999886 47888876 775 679999999999999999988631 111122233333
Q ss_pred -HHcCCCCHHHHHHHHHHHHHHHHHH
Q 042193 660 -RYTHGFSGADITEICQRACKYAIRE 684 (784)
Q Consensus 660 -~~~~g~sg~di~~l~~~a~~~a~~~ 684 (784)
..+.|. .+.+..+|+.|+..|..+
T Consensus 233 ~~~~~Gd-~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHGD-ARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHHHHc
Confidence 334453 345556888888777654
No 123
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5e-13 Score=150.71 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=132.8
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 35789999999999999887652 234567899999999999999999998754
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.+++++- ..-..+|.+...+. .....|+||||+|.+.. ...+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHHH
Confidence 2344443321 12345666655543 23457999999998743 356788
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s 666 (784)
+..|+... ..+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++.++.-+ ..+..+++.+.| +
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 345566666777778777776 77 58899999999999999988877665433 336778887766 7
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.+++.+++..+.
T Consensus 213 LRdALnLLDQaI 224 (702)
T PRK14960 213 LRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 124
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=2.6e-13 Score=160.76 Aligned_cols=204 Identities=23% Similarity=0.355 Sum_probs=140.6
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch--------
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-------- 531 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-------- 531 (784)
.++.|++.+|+.+.+++..... .+-.....++|+||||+|||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 3478999999999876653211 1112233599999999999999999999999999888755432
Q ss_pred -hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCC-------------CCC
Q 042193 532 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGM-------------NAK 597 (784)
Q Consensus 532 -~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~-------------~~~ 597 (784)
..|+|.....+.+.+..+....| |++|||||.+..... + ...+.|+..||.- ...
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-------g---~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-------G---DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-------C---CHHHHHHHHhccccEEEEecccccccccC
Confidence 24667766667777777665555 899999999865321 1 1346677777631 134
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-----CCCCC---ccC---HHHHHH-HcCCC
Q 042193 598 KTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-----SPISP---DVD---LSALAR-YTHGF 665 (784)
Q Consensus 598 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~~---~~~---~~~la~-~~~g~ 665 (784)
.++++|||+|.. .|+|+|++ ||+ +|.|+.++.++..+|.+.++.. .++.. ..+ +..+++ ++..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 689999999987 59999998 995 7899999999999999888731 12221 111 444443 23334
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 042193 666 SGADITEICQRACKYAIREN 685 (784)
Q Consensus 666 sg~di~~l~~~a~~~a~~~~ 685 (784)
-.+.|+.+++..+..++.+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 45777777777666555544
No 125
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=2.1e-13 Score=149.22 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=129.6
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc----------------
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 521 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 521 (784)
.|++|+|++.+++.|+..+..+..+. ..++...+.++||+||+|+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999987654322 22344567789999999999999999999975332
Q ss_pred -------EEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHH
Q 042193 522 -------FVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTE 590 (784)
Q Consensus 522 -------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 590 (784)
+..+.... . .-.-..++.+++.+.. ....|+||||+|.+.. ...|.||..
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHH
Confidence 11111110 0 1123457778877654 3356999999999743 245888998
Q ss_pred hhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHH
Q 042193 591 MDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADI 670 (784)
Q Consensus 591 ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di 670 (784)
|+.. ....++|++|+| ++.|.|++++ |+ ..++|++|+.++..+++... .+++ ......++..+.|..+..+
T Consensus 141 LEep-~~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEP-PPRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcC-CCCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 8864 334566666665 8999999988 87 58999999999887777632 2333 3346678888999877665
Q ss_pred HHH
Q 042193 671 TEI 673 (784)
Q Consensus 671 ~~l 673 (784)
.-+
T Consensus 212 ~l~ 214 (394)
T PRK07940 212 RLA 214 (394)
T ss_pred HHh
Confidence 543
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=3.7e-13 Score=152.00 Aligned_cols=172 Identities=14% Similarity=0.279 Sum_probs=120.4
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 569 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r 569 (784)
..++|||++|+|||+|++++++++ +..+++++..++...+...........|.+-.. .+++|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999976 467899999988876654433322334543333 35899999999986531
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC---CCCccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---VIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf--~~~i~~~~p~~~~r~~il~~~~ 644 (784)
.....|+..++.+...++.+||++...|. .+++.|.+ || ..++.+..||.+.|.+||+..+
T Consensus 394 ------------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ------------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ------------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 22344555555554444556665554454 46788887 77 4777999999999999999999
Q ss_pred ccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 645 RKSPISPDVD-LSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 645 ~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
+..++.-+.+ ++.|+....+ +.++|..++......+.
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 8766553333 6777776654 67788887776655444
No 127
>PRK06893 DNA replication initiation factor; Validated
Probab=99.48 E-value=4.8e-13 Score=137.10 Aligned_cols=160 Identities=11% Similarity=0.158 Sum_probs=103.9
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCC
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGA 571 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~ 571 (784)
..++||||||||||+|++++|++. +....+++..+.. .....+++..+ ...+++||||+.+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 348999999999999999999985 3344444443211 11123333333 34699999999876421
Q ss_pred CCCCCCCchHHHHHHHHHHhhCCCCCC-cEEEEEecCCCCCCC---ccccCCCCcccccccCCCCHHHHHHHHHHHhccC
Q 042193 572 SVGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDVID---PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 647 (784)
Q Consensus 572 ~~~~~~~~~~~~l~~ll~~ld~~~~~~-~v~vi~aTn~~~~ld---~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 647 (784)
... ..|+..++.....+ .++|++++..|..++ |.+.++.++..++.+++|+.++|.+|++..+...
T Consensus 108 -------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 112 23444444433333 456677777787664 7888745566888999999999999999888655
Q ss_pred CCCCc-cCHHHHHHHcCCCCHHHHHHHHHHH
Q 042193 648 PISPD-VDLSALARYTHGFSGADITEICQRA 677 (784)
Q Consensus 648 ~~~~~-~~~~~la~~~~g~sg~di~~l~~~a 677 (784)
++.-+ .-+..|++...| +.+.+.+++...
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 54322 237788887765 556666666543
No 128
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.1e-13 Score=148.48 Aligned_cols=164 Identities=24% Similarity=0.374 Sum_probs=127.2
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech------hhh--
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIM-- 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~------~l~-- 258 (784)
+|--|+++.+++|.|++...... |-..++-++|+||||+|||++++.||..++..|+.++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999998763332 223466799999999999999999999999999776542 332
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------------CCcE
Q 042193 259 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-------------RAHV 324 (784)
Q Consensus 259 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~v 324 (784)
..|+|....++-+.+.....+.| +++|||+|.+......+. .+.|+.++|.-+. -.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-------HHHHHHhcChhhccchhhhccccccchhhe
Confidence 25778888888888888888888 899999999984332222 2345666553322 2489
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 325 VVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
++|+|.|..+.|++.|+. |. ..|+++-+..++...|-+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999987 77 458999999999999988765
No 129
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=7e-13 Score=147.96 Aligned_cols=178 Identities=24% Similarity=0.329 Sum_probs=117.7
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchh----------cccC-------cc-hHHHHHHHHHhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLT----------MWFG-------ES-EANVREIFDKAR 550 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~----------~~~g-------~~-~~~i~~~f~~a~ 550 (784)
+.+++++||||+|||++++.+++.+ +..++.+++....+ ...+ .+ ......+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999876 46788888764321 1111 11 222333343333
Q ss_pred h-CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC---CCCccccCCCCcc-cc
Q 042193 551 Q-SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---VIDPALLRPGRLD-QL 625 (784)
Q Consensus 551 ~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~ 625 (784)
. ..+.||+|||+|.+...+ ....+..|+..++... ..++.+|+++|.++ .+++.+.+ ||. ..
T Consensus 135 ~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 346899999999987211 1346777777766553 23788888888764 46777765 563 67
Q ss_pred cccCCCCHHHHHHHHHHHhccCC---CCCccCHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHH
Q 042193 626 IYIPLPDEASRLQIFKACLRKSP---ISPDVDLSALARYTHGFSG--ADITEICQRACKYAIRE 684 (784)
Q Consensus 626 i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~g~sg--~di~~l~~~a~~~a~~~ 684 (784)
|+|++++.++..+|++..++... .-++..++.+++.+.+.+| +.+..+|+.|+..|..+
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 89999999999999998875421 1222336777777744333 44456777777776553
No 130
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.9e-12 Score=148.40 Aligned_cols=185 Identities=22% Similarity=0.320 Sum_probs=131.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 35789999999999988876653 1 234558999999999999999999987542
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+. ....|.|
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHH
Confidence 233333210 1123345554443 23456799999999874 3467899
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s 666 (784)
|..|+.- ...+.+|.+|+.++.|-+.+++ |+ ..++|.+++.++....++..++..++..+ ..+..|++.+.| +
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3456666667778888888887 86 68899999999999999888876555433 336678887776 6
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.++..+++..|.
T Consensus 214 ~R~Al~lldqai 225 (647)
T PRK07994 214 MRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHH
Confidence 667777776554
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=3e-13 Score=163.36 Aligned_cols=182 Identities=21% Similarity=0.360 Sum_probs=130.8
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKG 527 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~ 527 (784)
.++.+.|.+...+.+.+.+. .....+++|+||||||||++++.+|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 45566676665444444322 2334568999999999999999999975 567888887
Q ss_pred ccch--hcccCcchHHHHHHHHHhhhC-CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 528 PELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 528 ~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
..+. .+|.|+.++.++.+|+.+... .++||||||||.+.+.++.. +. ....+.|... .....+.+||
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~----l~~g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPA----LARGELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchh----hhcCceEEEE
Confidence 7765 578899999999999988653 58999999999998653221 11 2233333322 3456799999
Q ss_pred ecCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-----cCHHHHHHHcCCC
Q 042193 605 ATNRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-----VDLSALARYTHGF 665 (784)
Q Consensus 605 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-----~~~~~la~~~~g~ 665 (784)
+|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+..... ..+...+..+.+|
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 999874 47999999 996 5899999999999999987766544322 2355566666554
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=1.7e-13 Score=165.02 Aligned_cols=185 Identities=25% Similarity=0.373 Sum_probs=135.5
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVK 526 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~ 526 (784)
-.|+.+.|-++..+.+.+.+. ...+.+++|+||||||||++++.+|... +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 346777777777776665543 2345679999999999999999999976 36788999
Q ss_pred cccch--hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 527 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 527 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
...+. .+|.|+.+++++.+|+.+....++||||||||.+.+.++.. + . ..+.+.|...+ ..+.+.+||
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g----~-~~~a~lLkp~l----~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-G----A-IDAANILKPAL----ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-C----c-ccHHHHhHHHH----hCCCcEEEE
Confidence 88876 57899999999999999988888999999999998764321 1 1 11223232232 355788999
Q ss_pred ecCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc----CCCC-CccCHHHHHHHcCCCCH
Q 042193 605 ATNRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK----SPIS-PDVDLSALARYTHGFSG 667 (784)
Q Consensus 605 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~----~~~~-~~~~~~~la~~~~g~sg 667 (784)
+|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++. ++.-+..++..+.+|-+
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999764 47999999 996 5799999999999998765432 2222 22336677777766543
No 133
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.46 E-value=1.2e-12 Score=149.32 Aligned_cols=168 Identities=22% Similarity=0.328 Sum_probs=111.2
Q ss_pred eeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEecccchhcc---------c-------C-cchHHHHHHHHH
Q 042193 496 GVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKGPELLTMW---------F-------G-ESEANVREIFDK 548 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~~~l~~~~---------~-------g-~~~~~i~~~f~~ 548 (784)
.++++|+||||||++++.+..++ ...+++|++..+...+ + | .+...+..+|..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 35799999999999999998765 2567889885543221 0 1 123445666765
Q ss_pred hh--hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC---CCCCCccccCCCCcc
Q 042193 549 AR--QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR---PDVIDPALLRPGRLD 623 (784)
Q Consensus 549 a~--~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~---~~~ld~allr~gRf~ 623 (784)
.. .....||+|||||.|... ...++-.|+.... ....+++|||++|. ++.|+|.+.+ ||.
T Consensus 863 L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg 927 (1164)
T PTZ00112 863 NKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLA 927 (1164)
T ss_pred hhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccc
Confidence 42 233579999999998752 2345555555433 23457999999996 4567888876 665
Q ss_pred -cccccCCCCHHHHHHHHHHHhccCC-CCCccCHHHHHHHcCCCCHHHHH---HHHHHHHH
Q 042193 624 -QLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADIT---EICQRACK 679 (784)
Q Consensus 624 -~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~g~sg~di~---~l~~~a~~ 679 (784)
..|.|++|+.+++.+||+..++... +-.+.-++.+|+.....+| |++ .+|+.|+.
T Consensus 928 ~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgE 987 (1164)
T PTZ00112 928 FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFE 987 (1164)
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHh
Confidence 3588999999999999999887542 2223336677775544443 444 35555553
No 134
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=142.20 Aligned_cols=185 Identities=22% Similarity=0.310 Sum_probs=130.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|...+.. + +.+..++|+||+|+|||++|+++|..+...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999999998876642 1 245568999999999999999999987531
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+. ....+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 0123446666665432 234699999999863 2345778
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s 666 (784)
|..|+... ..+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++. ++..+..+++.+.| +
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 345556666778888888876 77 578999999999999999988776643 23346778887776 6
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.+++.+++..++
T Consensus 214 ~R~al~~l~~~~ 225 (363)
T PRK14961 214 MRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 135
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=7.4e-13 Score=150.70 Aligned_cols=189 Identities=25% Similarity=0.324 Sum_probs=130.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 535 (784)
..+++++.|.+.+++.|...+..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 34578899999999998887643111 2 23678999999999999999999999999999999876432
Q ss_pred CcchHHHHHHHHHhhh------CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 536 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 536 g~~~~~i~~~f~~a~~------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
...++.+...+.. ..+.+|||||+|.+... .....++.|+..++.. +..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----------~d~~~~~aL~~~l~~~----~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN----------EDRGGARAILELIKKA----KQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc----------cchhHHHHHHHHHHcC----CCCEEEeccCc
Confidence 1233333332221 24679999999998642 1112346666666632 23466678888
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACK 679 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~ 679 (784)
..+.+.-+| +....|.|++|+..+...+++..++..++. ++..+..|++.+.| |++.+++....
T Consensus 141 ~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 141 YDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred cccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 888773344 334689999999999999999988776654 22347778877655 77766665544
No 136
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.8e-13 Score=150.79 Aligned_cols=185 Identities=19% Similarity=0.258 Sum_probs=131.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
.-+|+++.|++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 44689999999999999887652 1335568999999999999999999987532
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHHHH
Confidence 44444331 122334566655443 23457999999998743 346889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s 666 (784)
|..|+.... .+.+|.+|+.+..+-+.+++ |+ ..+.|.+++.++....++..+++.++.-+ ..+..+++.+.| +
T Consensus 140 Lk~LEepp~--~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPPS--HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccCC--CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 999986533 45555566777777777776 77 57789988888888888888877665422 336778887765 7
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.+++.+++..+.
T Consensus 214 lR~al~lLdq~i 225 (509)
T PRK14958 214 VRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHH
Confidence 778888886664
No 137
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.2e-12 Score=149.23 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=134.5
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
.-+|+++.|++.+++.|...+.. -+.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 45789999999999999887653 1345679999999999999999999986432
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++.. ......++.+++.+.. ....|+||||+|.+. ...++.|
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NAL 139 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAM 139 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHH
Confidence 12222211 1223457777765432 335799999998753 3356889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s 666 (784)
|..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++...+++..+++.++.-+ ..+..|++.+.| +
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 99998643 345666677778888887775 77 56788899999999999998887765432 237788887765 7
Q ss_pred HHHHHHHHHHHHHH
Q 042193 667 GADITEICQRACKY 680 (784)
Q Consensus 667 g~di~~l~~~a~~~ 680 (784)
.+++.+++..+...
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888888766543
No 138
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.6e-12 Score=144.48 Aligned_cols=189 Identities=20% Similarity=0.287 Sum_probs=137.5
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc-------------
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 521 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~------------- 521 (784)
...+|+++.|++.+++.|...+.. -+.+.++||+||+|||||++|+++|+.+++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 445789999999999988775542 1345679999999999999999999987542
Q ss_pred ---------------EEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHH
Q 042193 522 ---------------FVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADR 582 (784)
Q Consensus 522 ---------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 582 (784)
++.+++.. ..+...++.+.+.+... ...|+||||+|.+.. .
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~ 143 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------G 143 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------H
Confidence 11111110 12345677777776543 346999999998742 3
Q ss_pred HHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHH
Q 042193 583 VLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARY 661 (784)
Q Consensus 583 ~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~ 661 (784)
.++.|+..|+.. ...+++|.+|+.++.+.+++++ |+ ..+.|.+++.++..++++..+++.++.-+ ..+..+++.
T Consensus 144 a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467888888853 3456666667778889998887 77 57889999999999999999987765433 336778887
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 042193 662 THGFSGADITEICQRACKYA 681 (784)
Q Consensus 662 ~~g~sg~di~~l~~~a~~~a 681 (784)
++| +.+++.+++..++..+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 776 7788888887776544
No 139
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.44 E-value=1.2e-12 Score=140.49 Aligned_cols=176 Identities=24% Similarity=0.390 Sum_probs=126.9
Q ss_pred cccchhhhhhhhccccccccCChhhhhhc-ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-hcccC-c
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKF-GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-TMWFG-E 537 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g-~ 537 (784)
.|.|++++|+.+..++............+ .-.+++++||+||||||||++|+++|..++.+|+.+++.++. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37889999988876655321111110110 122457899999999999999999999999999999999887 47888 5
Q ss_pred chHHHHHHHHHhh-------------------------------------------------------------------
Q 042193 538 SEANVREIFDKAR------------------------------------------------------------------- 550 (784)
Q Consensus 538 ~~~~i~~~f~~a~------------------------------------------------------------------- 550 (784)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777777777660
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 042193 551 ------------------------------------------------------------------------QSAPCVLF 558 (784)
Q Consensus 551 ------------------------------------------------------------------------~~~p~vl~ 558 (784)
.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------CCCcEEEEEecC----CCCCCCccccCCCCccccc
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATN----RPDVIDPALLRPGRLDQLI 626 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allr~gRf~~~i 626 (784)
|||||.++.+.+..+.+ -...-|++.||..++|-. +..++++||+-- .|+.|=|.|. |||+.++
T Consensus 253 iDEiDKIa~~~~~~~~D--vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGAD--VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCC--CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999764322222 223448899999999843 235677777753 4555666665 6999999
Q ss_pred ccCCCCHHHHHHHH
Q 042193 627 YIPLPDEASRLQIF 640 (784)
Q Consensus 627 ~~~~p~~~~r~~il 640 (784)
.+.+++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999998888
No 140
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.43 E-value=6e-13 Score=113.90 Aligned_cols=80 Identities=33% Similarity=0.560 Sum_probs=67.6
Q ss_pred eEEEecccCC---CCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCC--CCCeEEEcHHHHhhccccCCCe
Q 042193 8 RLVIDEAIND---DNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQC--EESKVGMNRVVRSNLRVRLGDL 82 (784)
Q Consensus 8 ~l~v~~~~~~---~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~g~~ 82 (784)
+|+|.++..+ ++++|+|||++|.+||+..||+|.|.|.+ .++|.+|+.... +++.|.||..+|+|+|+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~~--~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGKR--KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETTT--EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCCc--eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 6999999854 99999999999999999999999999943 489999986544 7899999999999999999999
Q ss_pred eeEEecC
Q 042193 83 VSVHACP 89 (784)
Q Consensus 83 v~v~~~~ 89 (784)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 141
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=1.3e-12 Score=146.18 Aligned_cols=173 Identities=17% Similarity=0.269 Sum_probs=120.0
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchH---HHHHHHHHhhhCCCeEEEEeccchh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~---~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+....+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999954 4678899998887665433222 222222222 24569999999987
Q ss_pred hhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHH
Q 042193 566 ATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV---IDPALLRPGRLD--QLIYIPLPDEASRLQIF 640 (784)
Q Consensus 566 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~il 640 (784)
.++ ......|...++.+...++.+|+++...|+. +++.+.+ ||. .++.+.+|+.++|.+|+
T Consensus 219 ~~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 542 2334555555555545555666666666654 4778877 774 77889999999999999
Q ss_pred HHHhccCCC---CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 641 KACLRKSPI---SPDVDLSALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 641 ~~~~~~~~~---~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
+..++..++ -++.-+..|++...| +.+.+.++|..+...+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 999977553 122337778877776 778888888877655543
No 142
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.3e-12 Score=154.68 Aligned_cols=185 Identities=19% Similarity=0.244 Sum_probs=128.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|++|.|++.+++.|...+.. -+.+..+||+||+|||||++|++||+.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 45789999999999998877652 134456899999999999999999998753
Q ss_pred -----------cEEEEecccchhcccCcchHHHHHH----HHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHH
Q 042193 521 -----------NFVSVKGPELLTMWFGESEANVREI----FDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLN 585 (784)
Q Consensus 521 -----------~~i~v~~~~l~~~~~g~~~~~i~~~----f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 585 (784)
.++.+++... ..-..++.+ +.........|+||||+|.|.. ...|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------------~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------------QGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------HHHH
Confidence 1233322211 012234443 3333345567999999999743 4568
Q ss_pred HHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCC
Q 042193 586 QLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHG 664 (784)
Q Consensus 586 ~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g 664 (784)
.||+.|+.... .+++|.+|+.++.|-+.+.+ |+ .++.|..++.++..++|+..+++.++..+. .+..+++...|
T Consensus 139 aLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999986543 55666666777778888876 76 578999999999999999888776665332 35667776665
Q ss_pred CCHHHHHHHHHHHH
Q 042193 665 FSGADITEICQRAC 678 (784)
Q Consensus 665 ~sg~di~~l~~~a~ 678 (784)
+.+++.+++...+
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6666666665544
No 143
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.8e-12 Score=144.57 Aligned_cols=183 Identities=21% Similarity=0.284 Sum_probs=126.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|++|.|++.+++.|..++.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 45789999999999999887653 1 234579999999999999999999987542
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHH----hhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~----a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++..- ..-..++.+.+. .......|+||||+|.+. ...++.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHHH
Confidence 333433210 111233333222 223345799999999874 2346888
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s 666 (784)
|..|+.. ...+++|.+||.++.+.+.+++ |+ .++.|++++.++...+|+..+++.++. ++..+..+++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888863 3457777788888888888876 77 478999999999999998888766643 23347778887765 4
Q ss_pred HHHHHHHHHH
Q 042193 667 GADITEICQR 676 (784)
Q Consensus 667 g~di~~l~~~ 676 (784)
.+++.+++..
T Consensus 214 lR~Al~lLeq 223 (624)
T PRK14959 214 VRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHH
Confidence 4454455543
No 144
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.5e-12 Score=141.29 Aligned_cols=187 Identities=19% Similarity=0.261 Sum_probs=136.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC----------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 519 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---------------- 519 (784)
..+|+|+.|++.+++.|...+.. + +.+.++||+||+|+||||+|+.+|..+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 35789999999999998876542 1 3456799999999999999999998642
Q ss_pred --------CcEEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 520 --------ANFVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 520 --------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
..++.+++++- .+-..++.+.+.+... ...|++|||+|.+. ...++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 23455554321 1234577777666433 35699999999874 2356889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s 666 (784)
|..|+... ..+.+|.+|+.++.|.+.+++ |+ ..+.|.+++.++..+.++..+++.++.- +..+..+++.++| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 355666666777778888887 77 4689999999999999999887766543 2347778887765 7
Q ss_pred HHHHHHHHHHHHHH
Q 042193 667 GADITEICQRACKY 680 (784)
Q Consensus 667 g~di~~l~~~a~~~ 680 (784)
.+++.+++..+...
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888777776643
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=9.3e-12 Score=142.99 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=134.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -..+..+||+||+|||||++|+.+|..+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 45789999999999999887653 134566899999999999999999998642
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
+++.+++.. +..-..++.+...+.. ....|++|||+|.+.. ...+.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHH
Confidence 234443321 2234567777766543 3357999999998742 356888
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s 666 (784)
|..|+... ..+++|.+|+.++.|.+.+++ |+. .+.|++|+.++...+++..+++.++.-+ ..+..++..+.| +
T Consensus 140 LKtLEepp--~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEPP--AHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCCC--CCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 98888643 345555566778889998887 774 6789999999999999998887765433 336777887776 7
Q ss_pred HHHHHHHHHHHHH
Q 042193 667 GADITEICQRACK 679 (784)
Q Consensus 667 g~di~~l~~~a~~ 679 (784)
.++..+++..+..
T Consensus 214 ~R~al~~Ldq~~~ 226 (559)
T PRK05563 214 MRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
No 146
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.1e-12 Score=147.31 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=129.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++|+++|..+.+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 34689999999999999887653 134456899999999999999999997652
Q ss_pred -----------cEEEEecccchhcccCcchHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHH
Q 042193 521 -----------NFVSVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLN 585 (784)
Q Consensus 521 -----------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 585 (784)
.++.+++... ..-..++.+-+.+ ......|+||||+|.+.. ...+
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------AGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------------HHHH
Confidence 1223332211 0123344443333 233457999999998742 3678
Q ss_pred HHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCC
Q 042193 586 QLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHG 664 (784)
Q Consensus 586 ~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g 664 (784)
.||..|+.. ...+++|.+|+.++.|-+.+++ |. .++.|..++.++..+.+...+++.++.-+. .+..+++.+.|
T Consensus 137 ALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999864 3356666677777888888887 75 578999999999898998888876654332 35566665554
Q ss_pred CCHHHHHHHHHHHHH
Q 042193 665 FSGADITEICQRACK 679 (784)
Q Consensus 665 ~sg~di~~l~~~a~~ 679 (784)
+.+++.+++..++.
T Consensus 212 -dlR~aln~Ldql~~ 225 (584)
T PRK14952 212 -SPRDTLSVLDQLLA 225 (584)
T ss_pred -CHHHHHHHHHHHHh
Confidence 67777777776553
No 147
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.7e-12 Score=144.69 Aligned_cols=164 Identities=24% Similarity=0.357 Sum_probs=127.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech------hhh--
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIM-- 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~------~l~-- 258 (784)
.|.-|+++.+++|.+++......+. ..+.-++|+||||+|||+|++.||+.++..|+.++-. ++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4678999999999998876322211 2344689999999999999999999999999887642 333
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------------CCcE
Q 042193 259 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-------------RAHV 324 (784)
Q Consensus 259 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~v 324 (784)
..|.|....++-+-+..+....| ++++||||.+...-..+.. +.|+..+|.-+. -..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 25778888888888888888888 9999999999876443332 345555553222 2489
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 325 VVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
++|+|.|..+.|+..|+. |. ..|++.-+++.+..+|-+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999986 77 458999999999999998775
No 148
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.40 E-value=3.8e-12 Score=130.90 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=102.4
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCC
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGA 571 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~ 571 (784)
..++|+||+|||||+|++++++... ..+.++...+... ....+.+.... ..+++||||+.+.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4699999999999999999998753 3445555443221 11122222222 2589999999875421
Q ss_pred CCCCCCCchHHHHHHHHHHhhCCCCCCc-EEEEEecCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhc
Q 042193 572 SVGDAGGAADRVLNQLLTEMDGMNAKKT-VFIIGATNRPDV---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 645 (784)
Q Consensus 572 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~-v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~~~ 645 (784)
... ..|...++.....++ .+++++++.|.. +.|.+.+ |+. .++.+.+|+.+++.++++..+.
T Consensus 114 -------~~~---~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 -------LWE---MAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHH---HHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 112 223333333222333 466666677655 5788887 875 8889999999999999998666
Q ss_pred cCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 646 KSPISPDV-DLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 646 ~~~~~~~~-~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
..++.-+. -++.|++..+| +.+.+.+++....
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 55443222 37788887776 6677777776643
No 149
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.9e-12 Score=140.85 Aligned_cols=185 Identities=23% Similarity=0.338 Sum_probs=131.3
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
...|+++.|++.+++.|...+.. -..+..+||+|||||||||+|+++|..+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 45799999999999999877653 123445799999999999999999998742
Q ss_pred --------cEEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 521 --------NFVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 521 --------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
.++.+++.. ..+-..++.+.+.+.. ..+.++||||+|.+. ...++.|+
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 133333321 1123345555444332 346799999998752 34578888
Q ss_pred HHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCCH
Q 042193 589 TEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSG 667 (784)
Q Consensus 589 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~sg 667 (784)
..|+.. ...+++|.+||.++.+.+.+.+ |+. ++.|++|+.++..+.++..+++.++.-+ ..+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888864 3356666677888899999887 774 7899999999999999998887766532 336778887776 55
Q ss_pred HHHHHHHHHHH
Q 042193 668 ADITEICQRAC 678 (784)
Q Consensus 668 ~di~~l~~~a~ 678 (784)
+++.++++.+.
T Consensus 212 R~aln~Lekl~ 222 (504)
T PRK14963 212 RDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 150
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.39 E-value=4.4e-12 Score=136.82 Aligned_cols=176 Identities=20% Similarity=0.325 Sum_probs=134.6
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
+...++||||.|+|||+|++|+++.. +..++++...++...++......-..-|++-+ .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34559999999999999999999975 34688888888887776655444455677766 446999999999876
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHH
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI---DPALLRPGRLD--QLIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~il~~ 642 (784)
+ ++...+|...++.+....+.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|..|++.
T Consensus 190 k------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 190 K------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred C------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 4 34567888888888777778888888888765 577777 876 7778999999999999999
Q ss_pred HhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 643 CLRKSPISPDVD-LSALARYTHGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 643 ~~~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
..+..++.-+.+ +..+|+... -+.+++..++......|....
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 887766553333 566776654 477888888877776665543
No 151
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.9e-12 Score=143.63 Aligned_cols=186 Identities=19% Similarity=0.294 Sum_probs=130.5
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 35689999999999999887653 133456899999999999999999998753
Q ss_pred --------------cEEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHH
Q 042193 521 --------------NFVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADR 582 (784)
Q Consensus 521 --------------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 582 (784)
.++.+++.. ...-..++.+.+.+... ...|++|||+|.+.. .
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~ 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------T 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------H
Confidence 122222211 11223566666654332 356999999998743 3
Q ss_pred HHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHH
Q 042193 583 VLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARY 661 (784)
Q Consensus 583 ~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~ 661 (784)
..|.||..|+... ..+.+|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+++.++.-+. .+..|++.
T Consensus 140 a~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4688888888633 345555566667777777776 77 688999999999999999888776655332 37778887
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 042193 662 THGFSGADITEICQRACK 679 (784)
Q Consensus 662 ~~g~sg~di~~l~~~a~~ 679 (784)
+.| +.+++.+++..+..
T Consensus 215 s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 215 ARG-SMRDALSLTDQAIA 231 (618)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 776 77777777655443
No 152
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.38 E-value=2.2e-11 Score=123.33 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=125.4
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC------cEEEEecc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFVSVKGP 528 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~------~~i~v~~~ 528 (784)
..-+++++.|++.+++.|...+.. .....+|||||||||||+.|+++|.++.. .+...+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 345689999999999999877652 22346999999999999999999998754 23333444
Q ss_pred cchhcccCcchHHHHHHHHHhhhC----------CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCC
Q 042193 529 ELLTMWFGESEANVREIFDKARQS----------APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKK 598 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~~----------~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 598 (784)
+-.+.-++. .++ +-|.+.... .+.|++|||.|++.. ...+.|.+.|+.. ..
T Consensus 98 derGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~~--s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMEDF--SR 158 (346)
T ss_pred ccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhcc--cc
Confidence 332221111 011 122222211 137999999998753 4568888899874 34
Q ss_pred cEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHH
Q 042193 599 TVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEICQRA 677 (784)
Q Consensus 599 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a 677 (784)
.+.+|..||.++.|.+-+.+ |.. .+.|+....+...+.|+....+.++.-+.+ +..+++.++| +-++-...++.+
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQSL 234 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 56667788999888777766 664 567877777777888888887777664433 7778887777 333434455555
Q ss_pred HH
Q 042193 678 CK 679 (784)
Q Consensus 678 ~~ 679 (784)
+.
T Consensus 235 s~ 236 (346)
T KOG0989|consen 235 SL 236 (346)
T ss_pred hc
Confidence 54
No 153
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8e-12 Score=142.50 Aligned_cols=186 Identities=24% Similarity=0.318 Sum_probs=130.7
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 35789999999999998877653 1234568999999999999999999987542
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+. ....|.|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naL 139 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAM 139 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHH
Confidence 22222211 1123456777666543 234699999999864 2356889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~s 666 (784)
|..|+... ..+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++..+.+...+++.++..+. .+..+++.+.| +
T Consensus 140 LK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s 213 (527)
T PRK14969 140 LKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S 213 (527)
T ss_pred HHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 355566666667777777776 77 688999999999888888888766654332 36777777765 6
Q ss_pred HHHHHHHHHHHHH
Q 042193 667 GADITEICQRACK 679 (784)
Q Consensus 667 g~di~~l~~~a~~ 679 (784)
.+++.+++..|..
T Consensus 214 lr~al~lldqai~ 226 (527)
T PRK14969 214 MRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777766654
No 154
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.38 E-value=8.9e-12 Score=136.08 Aligned_cols=186 Identities=22% Similarity=0.365 Sum_probs=119.3
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-----CcEEEEecccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFVSVKGPEL 530 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~i~v~~~~l 530 (784)
..+|+++.|.+.+++.|...+..+ ...+++|+||||||||++|+++++++. .+++.+++.++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 345788889999999888765421 123599999999999999999999873 35677777665
Q ss_pred hhcc-------------cCc-------chHHHHHHHHHhhh-----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHH
Q 042193 531 LTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLN 585 (784)
Q Consensus 531 ~~~~-------------~g~-------~~~~i~~~f~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 585 (784)
.... .+. ....++.+.+.... ..+.++|+||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHH
Confidence 3221 011 01223333322222 2246999999997632 2345
Q ss_pred HHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCC
Q 042193 586 QLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHG 664 (784)
Q Consensus 586 ~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 664 (784)
.|...|+.... ...+|+ +|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. ++..+..|++.+.|
T Consensus 144 ~L~~~le~~~~-~~~~Il-~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYSR-TCRFII-ATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhccC-CCeEEE-EeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56666665433 234444 45555666677766 76 478999999999999999988776654 23347778877644
Q ss_pred CCHHHHHHHHHHH
Q 042193 665 FSGADITEICQRA 677 (784)
Q Consensus 665 ~sg~di~~l~~~a 677 (784)
+++.++...
T Consensus 219 ----dlr~l~~~l 227 (337)
T PRK12402 219 ----DLRKAILTL 227 (337)
T ss_pred ----CHHHHHHHH
Confidence 444444433
No 155
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.38 E-value=5.1e-12 Score=129.69 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=109.2
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 569 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r 569 (784)
.+.+++|+||+|||||++|++++..+ +.+++.+++.++.... ..+++.... ..+|+|||+|.+...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~- 105 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQ- 105 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCC-
Confidence 35679999999999999999999876 4678888888775322 233333322 359999999987431
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC---ccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID---PALLRPGRL--DQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld---~allr~gRf--~~~i~~~~p~~~~r~~il~~~~ 644 (784)
......+...++........+|++++..+..++ +.+.+ |+ ...+.+|+|+.+++..+++..+
T Consensus 106 -----------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 106 -----------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred -----------hHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 011233333333322223345565555554443 66665 65 4789999999999999999877
Q ss_pred ccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 645 RKSPISP-DVDLSALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 645 ~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
.+.++.- +.-+..|++. -+-+.+++.++++.+...+..
T Consensus 173 ~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 173 ARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 6554432 2236777775 445888999998887655444
No 156
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.37 E-value=4.5e-12 Score=148.38 Aligned_cols=181 Identities=24% Similarity=0.377 Sum_probs=120.6
Q ss_pred cccccccchhhhhh---hhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 457 VSWEDIGGLETVKR---ELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 457 ~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
-+++++.|++.+.. .|...+.. ....+++|+|||||||||+|+++++..+..|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 45678888887763 34433321 123469999999999999999999999988888876421
Q ss_pred ccCcchHHHHHHHHHhh-----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 534 WFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~-----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
..+.++.++..+. .....++||||||.+... ..+.|+..++. ..+++|++|+.
T Consensus 89 ----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE~----g~IiLI~aTTe 146 (725)
T PRK13341 89 ----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVEN----GTITLIGATTE 146 (725)
T ss_pred ----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhcC----ceEEEEEecCC
Confidence 1122333443331 123569999999987431 23556655543 45677776643
Q ss_pred --CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc-------cCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 609 --PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-------KSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 609 --~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~-------~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
...+++++++ |. .++.|++++.+++..+++..+. ..++. ++.-+..|++...| +.+++.++++.|+
T Consensus 147 np~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3568899987 65 4689999999999999998886 22222 12236778887754 5677777777665
Q ss_pred H
Q 042193 679 K 679 (784)
Q Consensus 679 ~ 679 (784)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 157
>PRK08727 hypothetical protein; Validated
Probab=99.37 E-value=8.5e-12 Score=128.13 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=101.9
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCC
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGA 571 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~ 571 (784)
..++|+||+|||||+|+++++..+ +...++++..++. ..+...++.... ..+++|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~--~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEG--RSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhc--CCEEEEeCcccccCCh--
Confidence 449999999999999999998764 4555666654432 223344554433 3599999999876431
Q ss_pred CCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC---CccccCCCCc--ccccccCCCCHHHHHHHHHHHhcc
Q 042193 572 SVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI---DPALLRPGRL--DQLIYIPLPDEASRLQIFKACLRK 646 (784)
Q Consensus 572 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf--~~~i~~~~p~~~~r~~il~~~~~~ 646 (784)
... ..++..++.....+.-+|+++...|..+ +|++.+ || ..++.+++|+.+++.+|++..+..
T Consensus 110 -------~~~---~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDE---VALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHH---HHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 111 2333333333233334555555667655 788887 86 467899999999999999987755
Q ss_pred CCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 647 SPISP-DVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 647 ~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
.++.- +..+..|++.+.| +.+.+.+++....
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44432 2237788887764 3444444455433
No 158
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.37 E-value=4e-12 Score=136.65 Aligned_cols=177 Identities=24% Similarity=0.394 Sum_probs=127.4
Q ss_pred cccchhhhhhhhccccccccCChhhhhhcc-cCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh-cccC-c
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKFG-LSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT-MWFG-E 537 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g-~ 537 (784)
.|.|++++|+.+..++.............. -..+.++||+||||||||++|++||..++.+|+.+++.++.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 378999999988776643211110000000 012477999999999999999999999999999999998885 6888 4
Q ss_pred chHHHHHHHHHhh-------------------------------------------------------------------
Q 042193 538 SEANVREIFDKAR------------------------------------------------------------------- 550 (784)
Q Consensus 538 ~~~~i~~~f~~a~------------------------------------------------------------------- 550 (784)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777761
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 042193 551 ---Q--------------------------------------------------------------------SAPCVLFF 559 (784)
Q Consensus 551 ---~--------------------------------------------------------------------~~p~vl~i 559 (784)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 02249999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------CCCcEEEEEec----CCCCCCCccccCCCCcccccc
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDVIDPALLRPGRLDQLIY 627 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf~~~i~ 627 (784)
||||.++...+.+.. +-...-|++.||..++|-. +..++++||+- ..|+.|=|.|. |||+.++.
T Consensus 256 DEiDKIa~~~~~~~~--DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGP--DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCC--CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999976433211 2223458899999999842 23567777764 34666667776 59999999
Q ss_pred cCCCCHHHHHHHHH
Q 042193 628 IPLPDEASRLQIFK 641 (784)
Q Consensus 628 ~~~p~~~~r~~il~ 641 (784)
+.+++.++..+||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999998883
No 159
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=1.3e-11 Score=126.76 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=113.0
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcC
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 570 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 570 (784)
...++|+||+|+|||+|+++++++. +..+++++..++.... ..+.+..+.. .+++|||++.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC--
Confidence 3568999999999999999999764 5678888887775421 2233333332 48999999987542
Q ss_pred CCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHHHhc
Q 042193 571 ASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI---DPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 645 (784)
Q Consensus 571 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~il~~~~~ 645 (784)
.....+|+..++.....++.+|++++..|..+ .|.+.+ ||. .++.+.+|+.+++..+++..+.
T Consensus 113 ----------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 113 ----------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ----------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 12234566666666566677888888777544 678887 874 6778899999999999996665
Q ss_pred cCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 646 KSPISP-DVDLSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 646 ~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
..++.- +.-++.|++..++ +.+.+.+++......+
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 544432 2236777777665 7777777766554333
No 160
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.7e-11 Score=138.67 Aligned_cols=185 Identities=23% Similarity=0.292 Sum_probs=130.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|.+.+++.|...+.. -..+.++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45688999999999988876542 133467999999999999999999998642
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.+++.. ...-..++.+.+.+... ...|++|||+|.+.. ...+.|
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHH
Confidence 223333221 01223466666554432 346999999998732 245788
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s 666 (784)
|..|+... ..+++|.+|+.++.|.+++++ |+. ++.|++|+.++...+++..+++.++. ++..+..+++.+.| +
T Consensus 140 LKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhCC--CcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 88888643 356677777788999999887 774 78999999999999999888766543 22336778887776 5
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.+++.+++..++
T Consensus 214 lR~AlnlLekL~ 225 (605)
T PRK05896 214 LRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 161
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.6e-11 Score=133.25 Aligned_cols=175 Identities=27% Similarity=0.435 Sum_probs=121.4
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCc-----EEEEecccchhcc---------------cCcch-HHHHHHHHHhhh-
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FVSVKGPELLTMW---------------FGESE-ANVREIFDKARQ- 551 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~-----~i~v~~~~l~~~~---------------~g~~~-~~i~~~f~~a~~- 551 (784)
|.++++|||||||||++++.++.++... +++|++..+.+.| .|.+. +....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4459999999999999999999987433 8999987764332 12222 223333443333
Q ss_pred CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC---CCCCccccCCCCcc-cccc
Q 042193 552 SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP---DVIDPALLRPGRLD-QLIY 627 (784)
Q Consensus 552 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~---~~ld~allr~gRf~-~~i~ 627 (784)
...-|+++||+|.|..+. + .++..|+...+.. ..++.+|+.+|.. +.+||.+.+ +|. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~--------~---~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKD--------G---EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhcccc--------c---hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 345689999999998642 1 5777777776655 5688999999987 467898876 553 5699
Q ss_pred cCCCCHHHHHHHHHHHhccC----CCCCccCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 628 IPLPDEASRLQIFKACLRKS----PISPDVDLSALARY---THGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 628 ~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~---~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
||+++.++..+|++...+.. .+++++ ++.+|.. ..| +.+--..+|+.|+..|.++.
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999888643 222222 4444433 334 34444558999999998765
No 162
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=2.9e-11 Score=130.46 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=120.1
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-----CcEEEEecccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFVSVKGPEL 530 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~i~v~~~~l 530 (784)
..+++++.|.+++.+.|+..+.. + ...+++|+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-----------G--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 34678899999998888765432 1 123599999999999999999999862 23566666543
Q ss_pred hhcccCcchHHHHHHHHH---hh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 531 LTMWFGESEANVREIFDK---AR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~---a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
.+ ...++...+. .. ...+.+++|||+|.+.. ...+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcccC--CceEE
Confidence 21 1123332221 11 12357999999998753 234666777765433 23345
Q ss_pred EecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHH
Q 042193 604 GATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQ 675 (784)
Q Consensus 604 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 675 (784)
.+||.++.+.+++.+ |+ ..+.|++|+.++....++..+++.++. ++..+..+++.+.| +.+.+.+.++
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 567777788888887 77 488999999999999999888776554 23347777776665 3344444444
No 163
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=3.6e-11 Score=132.54 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=125.8
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|+++.|.+..+..|+.++... ..+..+||+||+||||||+|+.+|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4677889999999999999988877541 123468999999999999999999998753
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.. ...-..++.+.+.+ ......|+||||+|.+.. ...+.
T Consensus 78 C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NA 140 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNA 140 (484)
T ss_pred CcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHH
Confidence 12222211 01122344443333 234567999999998842 24566
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++. ....+++|.+|+.++.+.+.+++ |.. .+.+..++..+-.+.++..+....+. ++..+..++..+.|-
T Consensus 141 LLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 141 LLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 7777764 34578888889999999999987 663 46788888877777777666543332 344577888888875
Q ss_pred cHHHHHHHH
Q 042193 390 VGADLAALC 398 (784)
Q Consensus 390 ~~~dl~~l~ 398 (784)
. ++...++
T Consensus 216 ~-RdAL~lL 223 (484)
T PRK14956 216 V-RDMLSFM 223 (484)
T ss_pred H-HHHHHHH
Confidence 3 3333343
No 164
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.36 E-value=9.4e-12 Score=127.77 Aligned_cols=207 Identities=22% Similarity=0.395 Sum_probs=133.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCc---EEEEecccchhcccCcchHHHHHHHHHhhhC-----CCeEEEEeccchhh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQAN---FVSVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 566 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~---~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~ 566 (784)
.+++|+||||||||+||+.|+.....+ |+.++... ...+.+|.+|+.+... ...|||||||+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 459999999999999999999988755 77776643 2346788888887542 35799999999875
Q ss_pred hhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec-CCC-CCCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 042193 567 TQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT-NRP-DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 567 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT-n~~-~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~ 644 (784)
.. -+..||-.. ..+.+++|||| ..| -.|..||++ |+ +++.+.....++...||...+
T Consensus 236 ks--------------QQD~fLP~V----E~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KS--------------QQDTFLPHV----ENGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hh--------------hhhccccee----ccCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 42 123344332 34567777776 334 568899998 77 456677777888888887744
Q ss_pred c------c--CCCCC------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccC
Q 042193 645 R------K--SPISP------DVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDD 710 (784)
Q Consensus 645 ~------~--~~~~~------~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (784)
. + -++.. +--++.++..++|...+.|..+--.+.+...+++ +. .
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g-----------~~-----------~ 352 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSG-----------QS-----------S 352 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcC-----------Cc-----------c
Confidence 2 1 12222 1227788888998766655544333333333322 00 1
Q ss_pred cccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhccCC
Q 042193 711 VDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGF 751 (784)
Q Consensus 711 ~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 751 (784)
...++.+|+.++|+.-.---...--+.|.-+..-..++||=
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~ 393 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGS 393 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCC
Confidence 23688889988887765444444455666666666666653
No 165
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.35 E-value=1.4e-11 Score=126.38 Aligned_cols=175 Identities=13% Similarity=0.207 Sum_probs=114.6
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 569 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r 569 (784)
...+++|+||+|||||+||+++++.. +.+++.+++.++... +.. .....+++|||+|.+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~- 105 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA- 105 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch-
Confidence 45679999999999999999999875 567788877665321 111 223469999999986321
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCCCCCCc-EEEEEecCCCC--CCCccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGMNAKKT-VFIIGATNRPD--VIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~-v~vi~aTn~~~--~ld~allr~gRf--~~~i~~~~p~~~~r~~il~~~~ 644 (784)
....|+..++....... +++++++..|. .+.+.+.+ || ...+.+|+|+.+++..+++...
T Consensus 106 -------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 106 -------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred -------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 12334444443333334 34454444332 34566665 66 4789999999999999998877
Q ss_pred ccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHH
Q 042193 645 RKSPISPDV-DLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESM 723 (784)
Q Consensus 645 ~~~~~~~~~-~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al 723 (784)
...++.-+. -+..|++...| +.+++.++++.....|.... ..||...+++++
T Consensus 171 ~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~--------------------------~~i~~~~~~~~l 223 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK--------------------------RPVTLPLLREML 223 (227)
T ss_pred HHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC--------------------------CCCCHHHHHHHH
Confidence 655544322 36777775554 77788888876544443322 368888888887
Q ss_pred h
Q 042193 724 K 724 (784)
Q Consensus 724 ~ 724 (784)
.
T Consensus 224 ~ 224 (227)
T PRK08903 224 A 224 (227)
T ss_pred h
Confidence 5
No 166
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.5e-11 Score=139.99 Aligned_cols=192 Identities=23% Similarity=0.325 Sum_probs=133.2
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEE---------
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSV--------- 525 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v--------- 525 (784)
...+|+++.|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+.+.--..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3557999999999999988876531 3456689999999999999999999864321000
Q ss_pred ----ecccchh--cccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC
Q 042193 526 ----KGPELLT--MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN 595 (784)
Q Consensus 526 ----~~~~l~~--~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 595 (784)
...++.. .....+...++.+.+.+.. ....|++|||+|.+.. ..++.||..|+..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEEP- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEEP- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhcC-
Confidence 0001100 0000123457777766654 3457999999998642 3578899999864
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHH
Q 042193 596 AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEIC 674 (784)
Q Consensus 596 ~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~sg~di~~l~ 674 (784)
...+++|.+|+.++.|.+.+++ |+. ++.|.+|+.++...+++..+++.++.-+. .+..+|+.+.| +.+++..++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3456667777788899988887 884 88999999999999998888776654332 36677877775 556666666
Q ss_pred HHHH
Q 042193 675 QRAC 678 (784)
Q Consensus 675 ~~a~ 678 (784)
..++
T Consensus 221 ekl~ 224 (725)
T PRK07133 221 EQVS 224 (725)
T ss_pred HHHH
Confidence 6544
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.35 E-value=1.4e-11 Score=123.08 Aligned_cols=190 Identities=25% Similarity=0.386 Sum_probs=133.1
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEeccc
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPE 529 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~ 529 (784)
....+.++++.|++..|+.|.+.....+ . |. +..++||+|+.|||||++++++..+. +..+|.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-------~-G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL-------Q-GL-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH-------c-CC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3456789999999999999877654322 2 33 56779999999999999999999976 57788887776
Q ss_pred chhcccCcchHHHHHHHHHhhh-CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--CCCcEEEEEec
Q 042193 530 LLTMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGAT 606 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~v~vi~aT 606 (784)
+.. +..+++..+. ..+-|||+|++.. + ..+.-...|-..|||.- ...+|+|.+|+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsF----------e---~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSF----------E---EGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCC----------C---CCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 632 3334444332 2345999999753 1 11223466777788753 35689999999
Q ss_pred CCCCCCCc-----------------------cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CH----HHH
Q 042193 607 NRPDVIDP-----------------------ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DL----SAL 658 (784)
Q Consensus 607 n~~~~ld~-----------------------allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~----~~l 658 (784)
|+...+.+ +|.. ||...|.|.+|+.++-.+|++.+++..++.-+. ++ ...
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 98643321 2333 999999999999999999999999888776542 22 223
Q ss_pred HHHcCCCCHHHHHHHHH
Q 042193 659 ARYTHGFSGADITEICQ 675 (784)
Q Consensus 659 a~~~~g~sg~di~~l~~ 675 (784)
|..-.|.||+--.+.+.
T Consensus 227 a~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 34456778866555444
No 168
>PRK04195 replication factor C large subunit; Provisional
Probab=99.35 E-value=1.6e-11 Score=139.88 Aligned_cols=182 Identities=28% Similarity=0.402 Sum_probs=125.8
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
+.+.+.+++++.|.++.++.+++++..... | .++.++||+|||||||||+|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 356777899999999999999998864221 1 2367899999999999999999999999999999887643
Q ss_pred hhhcchhHHHHHHHHHHHHh------cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 259 SKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
.. ..++.+...+.. ..+.+|+|||+|.+..+.. ......|+..++. ....+|.++|.
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccC
Confidence 21 122332222221 2467999999999865321 1223455566652 22334556788
Q ss_pred CCCCCH-HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 333 PNSIDP-ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 333 ~~~ld~-al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
+..+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|-
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 877776 6664 33568999999999999998777544332 234477888877653
No 169
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.2e-11 Score=136.53 Aligned_cols=186 Identities=22% Similarity=0.281 Sum_probs=127.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 35689999999999988876653 133456899999999999999999997643
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.+++..- . .-..++.+.+.+. .....|+||||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2233332110 1 1223445554443 2345799999999863 3466889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~s 666 (784)
|..|+... ..+++|.+|+.+..+-+.+++ |+ ..++|.+++.++....++..+++.++..+. .+..+++.+.| +
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 345555555567777777776 77 688999999999888888888776654332 36677777765 6
Q ss_pred HHHHHHHHHHHHH
Q 042193 667 GADITEICQRACK 679 (784)
Q Consensus 667 g~di~~l~~~a~~ 679 (784)
.+++.+++..++.
T Consensus 214 lR~alnlLek~i~ 226 (546)
T PRK14957 214 LRDALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777766553
No 170
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.8e-11 Score=135.66 Aligned_cols=183 Identities=20% Similarity=0.290 Sum_probs=126.3
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46799999999999988877653 134566999999999999999999997642
Q ss_pred ----------cEEEEecccchhcccCcchHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHH
Q 042193 521 ----------NFVSVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQ 586 (784)
Q Consensus 521 ----------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 586 (784)
.++.+++... . +-..++.+-+.. ......|+||||+|.+.. ...+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHH
Confidence 2333333211 0 112333332222 234567999999998742 24688
Q ss_pred HHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCC
Q 042193 587 LLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 665 (784)
Q Consensus 587 ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~ 665 (784)
|+..|+... ..+++|.+||.++.|-+++.+ |+. .+.|++++.++...++...+++.++.- +..+..|+..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 899988643 355666677888888888887 774 789999999999999988887766542 2346778887765
Q ss_pred CHHHHHHHHHH
Q 042193 666 SGADITEICQR 676 (784)
Q Consensus 666 sg~di~~l~~~ 676 (784)
+.+.+.+.+..
T Consensus 215 dlr~a~~~Lek 225 (451)
T PRK06305 215 SLRDAESLYDY 225 (451)
T ss_pred CHHHHHHHHHH
Confidence 44455544443
No 171
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=4.1e-11 Score=134.39 Aligned_cols=176 Identities=18% Similarity=0.258 Sum_probs=121.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA----------- 247 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~----------- 247 (784)
+.+.+-+|+++.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 4677888999999999988888766531 23456999999999999999999998864
Q ss_pred -------------cEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 248 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 248 -------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
.++.+++.. ...-..++.+.+.+.. ....++|+||+|.+.. ...+.
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~ 136 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNA 136 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHH
Confidence 233343321 0112334554444332 2346999999998842 22355
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC--CCcccchhhhHHHHhcCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN--MKLAEDVDLERVARDTHG 388 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g 388 (784)
|+..++.. ...+++|++|+.+..+.+++++ |+ ..+.+..++.++...+++..+.. ..+. +..+..++..+.|
T Consensus 137 LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia~~s~G 210 (472)
T PRK14962 137 LLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIAKRASG 210 (472)
T ss_pred HHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCC
Confidence 66666643 2456777777777889999987 66 46899999999988888876643 3333 3347778877765
Q ss_pred C
Q 042193 389 Y 389 (784)
Q Consensus 389 ~ 389 (784)
-
T Consensus 211 d 211 (472)
T PRK14962 211 G 211 (472)
T ss_pred C
Confidence 3
No 172
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=3.8e-11 Score=132.13 Aligned_cols=187 Identities=24% Similarity=0.340 Sum_probs=132.0
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC--------------
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 520 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------------- 520 (784)
....|+++.|.+.+++.|.+.+.. -..+..+||+||||+|||++|++++..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 346799999999999998876642 123456899999999999999999988642
Q ss_pred ----------cEEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHH
Q 042193 521 ----------NFVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQ 586 (784)
Q Consensus 521 ----------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 586 (784)
.++.+++.+ ......++.+++.+... ...|++|||+|.+. ....+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHH
Confidence 233333321 12234567777766533 23599999998863 235678
Q ss_pred HHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCC
Q 042193 587 LLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 665 (784)
Q Consensus 587 ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~ 665 (784)
|+..++... ..+++|.+||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++.-+ ..+..+++.+.|
T Consensus 137 Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888887643 356666677888888888887 77 47899999999999999998887765422 336677777765
Q ss_pred CHHHHHHHHHHHHH
Q 042193 666 SGADITEICQRACK 679 (784)
Q Consensus 666 sg~di~~l~~~a~~ 679 (784)
+.+.+.+.+..+..
T Consensus 211 ~~~~a~~~lekl~~ 224 (355)
T TIGR02397 211 SLRDALSLLDQLIS 224 (355)
T ss_pred ChHHHHHHHHHHHh
Confidence 55566666655443
No 173
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.7e-11 Score=136.59 Aligned_cols=187 Identities=16% Similarity=0.242 Sum_probs=126.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+.+|++|.|++..++.|++++... ..+..+||+||+|+||||+++.+++.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 4677889999999999999998887641 123468999999999999999999998751
Q ss_pred -------------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHH
Q 042193 249 -------------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVER 305 (784)
Q Consensus 249 -------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~ 305 (784)
++.+++.+ ...-..++.+.+.. ......|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------
Confidence 12222110 01123345555443 234567999999998842
Q ss_pred HHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHH
Q 042193 306 RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVAR 384 (784)
Q Consensus 306 ~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~ 384 (784)
...+.|+..|+.- ..++++|.+|+.+..+.+.+++ |. ..+.|..++.++-.+.|+..+....+. ++..+..++.
T Consensus 139 ~AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2345677777653 3467788888999999999987 55 447888999888888877665443332 2233567777
Q ss_pred hcCCCcHHHHHHHHHH
Q 042193 385 DTHGYVGADLAALCTE 400 (784)
Q Consensus 385 ~t~g~~~~dl~~l~~~ 400 (784)
.+.|-.. +...++..
T Consensus 214 ~A~Gs~R-dALsLLdQ 228 (700)
T PRK12323 214 AAQGSMR-DALSLTDQ 228 (700)
T ss_pred HcCCCHH-HHHHHHHH
Confidence 7777543 44444443
No 174
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.1e-11 Score=143.14 Aligned_cols=185 Identities=23% Similarity=0.296 Sum_probs=132.1
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 45799999999999999877652 1345668999999999999999999986431
Q ss_pred ----------EEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 522 ----------FVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 522 ----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
++.+++.. ...-..++.+.+.+... ...|++|||+|.+.. ...+.|
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHH
Confidence 33333322 11234566666655432 346999999998742 356889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s 666 (784)
|..|+.. ...+++|.+|+.++.|.+.+++ |+ ..+.|..++.++....+...+++.++.- +..+..+++.+.| +
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3456677777888889888887 76 4788999999888888888887766542 2346778887776 5
Q ss_pred HHHHHHHHHHHH
Q 042193 667 GADITEICQRAC 678 (784)
Q Consensus 667 g~di~~l~~~a~ 678 (784)
.+++.+++..+.
T Consensus 214 lr~al~~Ldqli 225 (576)
T PRK14965 214 MRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHHHH
Confidence 566666665544
No 175
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.4e-11 Score=136.44 Aligned_cols=187 Identities=16% Similarity=0.237 Sum_probs=128.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|++..++.|+.++... ..+..+||+||+||||||+++.+++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 5678889999999999999998877531 124468999999999999999999998652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.++..+ ...-..++.+++.+. .....|+||||+|.|.. ...+.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHH
Confidence 22222211 111223555555432 23457999999998842 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..|+.. ..++.+|.+||.+..|.+.+++ |+ ..+.|..+..++-.+.|+..+....+. ++..+..|++...|-
T Consensus 139 LLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 139 MLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777653 3467788888899999989887 66 457889999988888888766543332 334477788888876
Q ss_pred cHHHHHHHHHH
Q 042193 390 VGADLAALCTE 400 (784)
Q Consensus 390 ~~~dl~~l~~~ 400 (784)
.. +...++..
T Consensus 214 mR-dALsLLdQ 223 (830)
T PRK07003 214 MR-DALSLTDQ 223 (830)
T ss_pred HH-HHHHHHHH
Confidence 43 33344333
No 176
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=1.4e-11 Score=133.23 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=106.4
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccC
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFG 536 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 536 (784)
.+++++.|.+.+++.+...+.. + ..+..++|+||||+|||++++++++..+.+++.+++.+ .. +.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 4678899999999988876642 1 23445777999999999999999999998888888876 11 11
Q ss_pred cchHHHHHHHHHh-hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCcc
Q 042193 537 ESEANVREIFDKA-RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPA 615 (784)
Q Consensus 537 ~~~~~i~~~f~~a-~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~a 615 (784)
.....+....... -...+.++||||+|.+.. ......|...|+... .++.+|.+||.++.++++
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAYS--KNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHhcC--CCceEEEEcCChhhchHH
Confidence 1112222211111 113468999999998622 112334444455433 345677788999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHH
Q 042193 616 LLRPGRLDQLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 616 llr~gRf~~~i~~~~p~~~~r~~il~~~ 643 (784)
+.+ ||. .+.|+.|+.+++.++++..
T Consensus 148 l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 148 LRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 988 885 7899999999998777654
No 177
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.33 E-value=8.9e-11 Score=136.47 Aligned_cols=223 Identities=26% Similarity=0.364 Sum_probs=136.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSV 525 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v 525 (784)
..+|+++.|.+...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45678888988887766544321 123469999999999999999998765 3578999
Q ss_pred ecccch-------hcccCcchHH----HHHHHHH----------hhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHH
Q 042193 526 KGPELL-------TMWFGESEAN----VREIFDK----------ARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVL 584 (784)
Q Consensus 526 ~~~~l~-------~~~~g~~~~~----i~~~f~~----------a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 584 (784)
++..+. ..++|..... .+..+.. .......+|||||++.+-. ..+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 887652 1122211110 1111110 0011235999999987643 344
Q ss_pred HHHHHHhhCCC--------------------------CCCcEEEEE-ecCCCCCCCccccCCCCcccccccCCCCHHHHH
Q 042193 585 NQLLTEMDGMN--------------------------AKKTVFIIG-ATNRPDVIDPALLRPGRLDQLIYIPLPDEASRL 637 (784)
Q Consensus 585 ~~ll~~ld~~~--------------------------~~~~v~vi~-aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~ 637 (784)
..|+..|+.-. ....+++|+ ||+.++.+++++.+ ||. .++|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 55555554310 112355555 55668889999887 987 5689999999999
Q ss_pred HHHHHHhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccH
Q 042193 638 QIFKACLRKSPISP-DVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITA 716 (784)
Q Consensus 638 ~il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 716 (784)
.|++..+++.++.- +.-+..|++++. .|+...+++..+...+..+..... .......|+.
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~-----------------~~~~~~~I~~ 420 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAG-----------------KENDKVTITQ 420 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhc-----------------cCCCCeeECH
Confidence 99999988765432 222455555442 556655666666544443321000 0001236899
Q ss_pred HHHHHHHhhcc
Q 042193 717 AHFEESMKYAR 727 (784)
Q Consensus 717 ~~~~~al~~~~ 727 (784)
+|++++++.-+
T Consensus 421 edv~~~l~~~r 431 (615)
T TIGR02903 421 DDVYEVIQISR 431 (615)
T ss_pred HHHHHHhCCCc
Confidence 99999988754
No 178
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=6e-12 Score=127.74 Aligned_cols=169 Identities=23% Similarity=0.380 Sum_probs=113.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchH-HHHHHHHHhhhCCCeEEEEeccchhhhh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 568 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~vl~iDEid~l~~~ 568 (784)
..++||||+|+|||+|+++++++. +..++++++.++...+...... .+..+....+ ...+++||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 458999999999999999999874 5678899998887655432221 2222223333 3469999999998653
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHHH
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI---DPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~il~~~ 643 (784)
......|...++.+...++.+|+++...|..+ ++.+.+ ||. .++.+.+|+.+.|.+|++..
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 34566777777766566677888888888765 566666 765 57888999999999999999
Q ss_pred hccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 042193 644 LRKSPISPDVD-LSALARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 644 ~~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~ 680 (784)
++..++.-+.+ +..|++...+ +.++|..++......
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAY 215 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 98776654433 5667776554 777888777765543
No 179
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.4e-11 Score=135.71 Aligned_cols=186 Identities=22% Similarity=0.322 Sum_probs=127.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -..+..+|||||+|+|||++|+.+|..+.+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 45789999999999998877652 133456899999999999999999998652
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+.. ...+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naL 139 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNAL 139 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHH
Confidence 111121110 0112335555544432 3457999999998642 345788
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~s 666 (784)
+..|+.... .+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++..++..++.-+. .+..+++.+.| +
T Consensus 140 Lk~LEepp~--~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEEPPP--RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhcCCC--CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888886432 34444455667778888877 774 78999999999999999988877765332 36777777765 5
Q ss_pred HHHHHHHHHHHHH
Q 042193 667 GADITEICQRACK 679 (784)
Q Consensus 667 g~di~~l~~~a~~ 679 (784)
.+++.+++..++.
T Consensus 214 lr~al~~Ldkl~~ 226 (486)
T PRK14953 214 MRDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666543
No 180
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=5.6e-11 Score=130.25 Aligned_cols=185 Identities=20% Similarity=0.308 Sum_probs=123.6
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE---------------
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF--------------- 249 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------------- 249 (784)
.|++|+|++..++.|++++..+..++. .++...+..+||+||||+|||++|+.+|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 377899999999999999987544322 22334567899999999999999999999875421
Q ss_pred --------EEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 042193 250 --------FLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG 317 (784)
Q Consensus 250 --------~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 317 (784)
..+.... ..-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..++.
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 1111100 01122346677766543 33469999999998532 23567777775
Q ss_pred cccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHH
Q 042193 318 LKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAAL 397 (784)
Q Consensus 318 ~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l 397 (784)
... ..++++ +|+.++.+.|.+++ |. ..+.++.|+.++..++|.... .+. ......++..++|..+..+..+
T Consensus 144 p~~-~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP-RTVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC-CCeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 422 334444 45558899999998 66 578999999988877776321 222 3346678888899887655443
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.32 E-value=1.6e-11 Score=128.44 Aligned_cols=132 Identities=25% Similarity=0.338 Sum_probs=93.7
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecc------cchhcccCcchHHH---------------------HHHH
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGP------ELLTMWFGESEANV---------------------REIF 546 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~------~l~~~~~g~~~~~i---------------------~~~f 546 (784)
...++|+||||||||++|+++|...+.+++.+++. ++++.|.+.....+ +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 35699999999999999999999999999998764 33343332221111 1122
Q ss_pred HHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------------CCCcEEEEEecCCCC--
Q 042193 547 DKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------------AKKTVFIIGATNRPD-- 610 (784)
Q Consensus 547 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------------~~~~v~vi~aTn~~~-- 610 (784)
..... ..+++||||+.+- ..+++.|+..|+... ...+..||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999843 346677777776421 113567999999763
Q ss_pred ---CCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 042193 611 ---VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 611 ---~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~ 644 (784)
.+++++++ || ..++++.|+.++..+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 98 588999999999999998865
No 182
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.30 E-value=7.5e-11 Score=131.76 Aligned_cols=172 Identities=28% Similarity=0.451 Sum_probs=118.1
Q ss_pred hhcCCCCcccccChHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 042193 179 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP 255 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~ 255 (784)
+++.+-+++++.|.++.+.. +++++.. ....+++|+|||||||||+|+++++.++..++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 45667788999999988766 6666643 1234799999999999999999999999999888864
Q ss_pred hhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcC
Q 042193 256 EIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331 (784)
Q Consensus 256 ~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn 331 (784)
.. ....++.+++.+. .....++||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCC
Confidence 32 1223444554442 235679999999987421 22345555542 4567776653
Q ss_pred --CCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC-----CcccchhhhHHHHhcCCC
Q 042193 332 --RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM-----KLAEDVDLERVARDTHGY 389 (784)
Q Consensus 332 --~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~-----~~~~~~~l~~la~~t~g~ 389 (784)
....+++++++ |+ ..+.+..++.++...+++..+... .+. +..+..++..+.|-
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~Gd 189 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANGD 189 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCCC
Confidence 34478889987 66 568899999999988888665431 222 23356677766553
No 183
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=1.4e-10 Score=128.07 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=123.3
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEechhh
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEI 257 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~~~v~~~~l 257 (784)
+++.|.+++++.|...+.-.+.. ..+.+++|+||||||||++++.+++.+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999998877532211 2346799999999999999999998753 45778887542
Q ss_pred hh----------hhc--c--------hhHHHHHHHHHHHH-hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 258 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 258 ~~----------~~~--g--------~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
.+ ... + .....+..+++... ...+.+++|||+|.+.... ..++.+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 0 01222344444443 2456789999999997321 113344444422
Q ss_pred ccc-cCCcEEEEEEcCCCC---CCCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHHHcC-C--CcccchhhhH---HHHh
Q 042193 317 GLK-SRAHVVVMGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVFRIHTKN-M--KLAEDVDLER---VARD 385 (784)
Q Consensus 317 ~~~-~~~~vivI~atn~~~---~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~-~--~~~~~~~l~~---la~~ 385 (784)
... ...++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+.. . ...++..+.. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 111 235788888998875 46777765 564 56899999999999999987652 1 1111221233 3344
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 042193 386 THGYVGADLAALCTEAALQCIR 407 (784)
Q Consensus 386 t~g~~~~dl~~l~~~a~~~~~~ 407 (784)
+.|... ....+|..|+..+..
T Consensus 236 ~~Gd~R-~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 236 EHGDAR-KAIDLLRVAGEIAER 256 (365)
T ss_pred hcCCHH-HHHHHHHHHHHHHHH
Confidence 455433 334456666554443
No 184
>PRK06620 hypothetical protein; Validated
Probab=99.29 E-value=2.2e-11 Score=122.90 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=96.6
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCC
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVG 574 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~ 574 (784)
+.++||||||||||+|+++++...+..++. .... ....++ ...+++|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~~-----~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEILE-----KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHHh-----cCCEEEEeccccch--------
Confidence 569999999999999999999887653322 1100 001111 23599999999531
Q ss_pred CCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC--CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhccCCCC
Q 042193 575 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV--IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPIS 650 (784)
Q Consensus 575 ~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~--ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~ 650 (784)
. ..|...++.+...++.+||+++..|.. + |++++ |+. .++.+.+|+.+.+..+++..++..++.
T Consensus 99 ------~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 133444444444556788888877764 4 67776 775 578999999999999999888755543
Q ss_pred C-ccCHHHHHHHcCCCCHHHHHHHHHHH
Q 042193 651 P-DVDLSALARYTHGFSGADITEICQRA 677 (784)
Q Consensus 651 ~-~~~~~~la~~~~g~sg~di~~l~~~a 677 (784)
- +.-++.|++...+ +.+.+.+++...
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 2 2237788887765 666777666653
No 185
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=6.3e-11 Score=135.60 Aligned_cols=186 Identities=20% Similarity=0.278 Sum_probs=130.3
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC--------------
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 520 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------------- 520 (784)
...+|+++.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+..
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 345789999999999998877652 124556999999999999999999998653
Q ss_pred ----------cEEEEecccchhcccCcchHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHH
Q 042193 521 ----------NFVSVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQ 586 (784)
Q Consensus 521 ----------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 586 (784)
+++.+++.. ...-..++.+.+.+ ......|++|||+|.+. ...++.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~na 138 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNA 138 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHH
Confidence 122232211 01123455554332 23456799999999863 335688
Q ss_pred HHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCC
Q 042193 587 LLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 665 (784)
Q Consensus 587 ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~ 665 (784)
||..|+.. ...+++|.+|+.++.|.+++.+ |+. .+.|.+++.++..++++..++..++.- +..+..|++.+.|
T Consensus 139 LLK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888853 3456666666778888888887 775 678999999999999998887666542 2336678877776
Q ss_pred CHHHHHHHHHHHH
Q 042193 666 SGADITEICQRAC 678 (784)
Q Consensus 666 sg~di~~l~~~a~ 678 (784)
+.+++.+++..++
T Consensus 213 dlR~alslLdkli 225 (563)
T PRK06647 213 SVRDAYTLFDQVV 225 (563)
T ss_pred CHHHHHHHHHHHH
Confidence 6667777776554
No 186
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=8.7e-11 Score=129.61 Aligned_cols=192 Identities=20% Similarity=0.281 Sum_probs=128.5
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc----
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL---- 530 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l---- 530 (784)
...+|+++.|.+.+++.+...+.. + ..+.++|||||||+|||++|+++++.+........+..+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 345789999999999888877653 1 345679999999999999999999987542111000000
Q ss_pred --hhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 531 --LTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 531 --~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
...........++.+++.+... .+.++++||+|.+.. ..++.|+..++... ...++|.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~~--~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEPP--AHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCCC--CceEEEE
Confidence 0000112235677777765432 356999999997642 24677888787532 2344555
Q ss_pred ecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 605 ATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 605 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
+|+.+..+.+++.+ |+. ++.|++|+.++...++...+++.++. ++..+..+++.+.| +.+.+.+.+....
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 56667888888877 663 68999999999999998888776653 23447778877665 5555555555544
No 187
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=2.4e-10 Score=127.57 Aligned_cols=220 Identities=25% Similarity=0.315 Sum_probs=133.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhh---
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIM--- 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~--- 258 (784)
+.+.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.+++.+ +..+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 45888999999888776432211 235679999999999999999999877 4567888885321
Q ss_pred -------hhhcc--------hhHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 042193 259 -------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA 322 (784)
Q Consensus 259 -------~~~~g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 322 (784)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+.+++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-CC
Confidence 11111 112223333333332 3567999999999973211 123445555554432 23
Q ss_pred cEEEEEEcCCCC---CCCHHHHhcCCc-ceEEEeCCCCHHHHHHHHHHHHcCC---CcccchhhhHHHHhcCCCcH--HH
Q 042193 323 HVVVMGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVFRIHTKNM---KLAEDVDLERVARDTHGYVG--AD 393 (784)
Q Consensus 323 ~vivI~atn~~~---~ld~al~r~~rf-~~~i~i~~p~~~~R~~il~~~~~~~---~~~~~~~l~~la~~t~g~~~--~d 393 (784)
++.+|+++|.++ .+++.+++ || ...+.+++++.++..+|++.++... ...++..++.+++.+.+..| +.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 677888887654 46677765 44 3568999999999999999776431 12233345666666643222 33
Q ss_pred HHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccC
Q 042193 394 LAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 394 l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
...++..|+..+..+. ...++.+++..++...
T Consensus 251 a~~ll~~a~~~a~~~~-----------------~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 251 AIDLLRRAGLIAEREG-----------------SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHH
Confidence 3455555554443321 2245666676666544
No 188
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.5e-10 Score=126.96 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=123.8
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL------- 251 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~------- 251 (784)
+++.+.+|++|.|++..++.++..+... ..+..+||+||||+||||+|+++|+.+.+....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 5677889999999999999988777531 124468999999999999999999988632100
Q ss_pred -Eechhhhhh----------hcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 252 -INGPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 252 -v~~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
.+|.++... .....-..++.+.+.+.. ....+++|||+|.+.. ...+.|+..++
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~lE 144 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTLE 144 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 001111000 000122345555554432 2346999999998742 23345676676
Q ss_pred ccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHH
Q 042193 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLA 395 (784)
Q Consensus 317 ~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~ 395 (784)
... ..+.+|.+|+.++.+.+.+++ |+ ..+++..|+.++..++++..++.... .++..+..++..+.|- .+++.
T Consensus 145 e~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~-~R~al 218 (363)
T PRK14961 145 EPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS-MRDAL 218 (363)
T ss_pred cCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 532 355566667778888888876 65 45899999999999998876655432 2334467777777763 33444
Q ss_pred HHHHH
Q 042193 396 ALCTE 400 (784)
Q Consensus 396 ~l~~~ 400 (784)
.++..
T Consensus 219 ~~l~~ 223 (363)
T PRK14961 219 NLLEH 223 (363)
T ss_pred HHHHH
Confidence 44433
No 189
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9e-11 Score=132.14 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=131.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45789999999999999877642 1 34556899999999999999999998631
Q ss_pred ---------cEEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 521 ---------NFVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 521 ---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
.++.+++..- ..-..++.+.+.... ....|++|||+|.+. ...++.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1222222110 112456665554322 234699999998863 3467889
Q ss_pred HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCC
Q 042193 588 LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 666 (784)
Q Consensus 588 l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s 666 (784)
|..|+..+. .+.+|.+|+.+..|.+++++ |. .+++|.+++.++..+.++..+++.++.- +..+..+++.+.| +
T Consensus 138 LK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 999987533 34445555667888899887 76 5889999999998888888887766543 2346778877766 7
Q ss_pred HHHHHHHHHHHHHHH
Q 042193 667 GADITEICQRACKYA 681 (784)
Q Consensus 667 g~di~~l~~~a~~~a 681 (784)
.+++.+++..|...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 778888887766544
No 190
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.27 E-value=9e-11 Score=139.30 Aligned_cols=163 Identities=22% Similarity=0.331 Sum_probs=117.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-------- 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~-------- 258 (784)
.++.|+++.+++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35899999999998877642211 112456799999999999999999999999998877654321
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc-----c--------cCCcE
Q 042193 259 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL-----K--------SRAHV 324 (784)
Q Consensus 259 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 324 (784)
..|.|.....+...+..+....| ++++||+|.+.+..... ..+.|+..+|.- . .-.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13445555555555555544445 89999999997653221 234566666531 1 12678
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 325 VVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
++|+|+|.. .++++|+. |+. .|.+..++.++..+|.+.++
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhh
Confidence 999999887 59999987 884 68999999999999988766
No 191
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.27 E-value=7.8e-11 Score=121.61 Aligned_cols=228 Identities=16% Similarity=0.238 Sum_probs=142.7
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---------CcEEEEe
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFVSVK 526 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---------~~~i~v~ 526 (784)
.-.|-+.....++.+.|.+.+.+|.. ....++||+|++|.|||++++.+..... .|++.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe
Confidence 33565555556666777777777632 3456799999999999999999998652 4677776
Q ss_pred cccchh--------------cc-cC-cchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHH
Q 042193 527 GPELLT--------------MW-FG-ESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTE 590 (784)
Q Consensus 527 ~~~l~~--------------~~-~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 590 (784)
++.--+ .| .. ...+.-..+..-.+...+.+|+|||++.++.- ..+-..++|+.
T Consensus 103 ~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-----------s~~~qr~~Ln~ 171 (302)
T PF05621_consen 103 MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-----------SYRKQREFLNA 171 (302)
T ss_pred cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-----------cHHHHHHHHHH
Confidence 643211 11 01 11222233444555667789999999997641 12234566666
Q ss_pred hhCCCCCC--cEEEEEecCCCCCC--CccccCCCCcccccccCCC-CHHHHHHHHHHHhccCCCCCc------cCHHHHH
Q 042193 591 MDGMNAKK--TVFIIGATNRPDVI--DPALLRPGRLDQLIYIPLP-DEASRLQIFKACLRKSPISPD------VDLSALA 659 (784)
Q Consensus 591 ld~~~~~~--~v~vi~aTn~~~~l--d~allr~gRf~~~i~~~~p-~~~~r~~il~~~~~~~~~~~~------~~~~~la 659 (784)
+..+.+.- .++.+||......+ |+.+.+ ||+ .+.+|.- ..++-..++..+-+..|+... .-...|-
T Consensus 172 LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~ 248 (302)
T PF05621_consen 172 LKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIH 248 (302)
T ss_pred HHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 66654433 45566655444444 788887 997 3344432 223345566665555554422 2245677
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHH
Q 042193 660 RYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDAD 734 (784)
Q Consensus 660 ~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~ 734 (784)
..++|..| ++..++..|+..|++.+- ..||.+++.. +..+.||-...+
T Consensus 249 ~~s~G~iG-~l~~ll~~aA~~AI~sG~-------------------------E~It~~~l~~-~~~~~ps~R~~~ 296 (302)
T PF05621_consen 249 ERSEGLIG-ELSRLLNAAAIAAIRSGE-------------------------ERITREILDK-IDWVPPSERRRQ 296 (302)
T ss_pred HHcCCchH-HHHHHHHHHHHHHHhcCC-------------------------ceecHHHHhh-CCCcChhhhhhh
Confidence 78999888 999999999999998762 3588877765 456666544433
No 192
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2.3e-10 Score=133.13 Aligned_cols=192 Identities=17% Similarity=0.223 Sum_probs=125.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE--------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFF-------- 250 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~-------- 250 (784)
+++.+.+|++|.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.+++...
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4678889999999999999988776531 12445799999999999999999999875310
Q ss_pred EEechhhhhh-------hcc---hhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 251 LINGPEIMSK-------LAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 251 ~v~~~~l~~~-------~~g---~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
.-.|..+... ..+ ..-..++.+.+... .....|+||||+|.|. ....+.|+..|+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLE 144 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLE 144 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHh
Confidence 0001111100 000 11223444444332 2345699999999884 234567788887
Q ss_pred ccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHH
Q 042193 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLA 395 (784)
Q Consensus 317 ~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~ 395 (784)
.. ...+.+|.+|+.+..+.+.+++ |. ..+.|..++.++-...|+..+....+. .+..+..++..+.|-.+ ++.
T Consensus 145 EP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~AL 218 (944)
T PRK14949 145 EP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DAL 218 (944)
T ss_pred cc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHH
Confidence 53 3356666678888888888876 55 457899999988888887766443222 23346778888777543 444
Q ss_pred HHHH
Q 042193 396 ALCT 399 (784)
Q Consensus 396 ~l~~ 399 (784)
.++.
T Consensus 219 nLLd 222 (944)
T PRK14949 219 SLTD 222 (944)
T ss_pred HHHH
Confidence 4443
No 193
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=5.8e-11 Score=131.72 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=124.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 45689999999999988776652 1 345679999999999999999999987542
Q ss_pred ------------------EEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCc
Q 042193 522 ------------------FVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGA 579 (784)
Q Consensus 522 ------------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~ 579 (784)
++.+++.+. ..-..++.+.+.+. .....|+||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 222222110 11245555544442 22346999999998742
Q ss_pred hHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHH
Q 042193 580 ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSAL 658 (784)
Q Consensus 580 ~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 658 (784)
...+.|+..++.... ..++|.+|+.+..+-+++.+ |.. ++.|++++.++..+.++..++..++. ++..+..+
T Consensus 142 --~~~~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 245678888875432 34444455566777777776 664 78999999999888888887765543 22337778
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 042193 659 ARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 659 a~~~~g~sg~di~~l~~~a~~~ 680 (784)
++.+.| +.+.+.+.+..+...
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 877765 555666666655443
No 194
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=1.8e-10 Score=124.28 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=115.8
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA-----FFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~~~v~ 253 (784)
+++.+-+++++.|.++.++.|+.++.. ....++||+|||||||||+|+++|+++.. .++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 456778899999999999988877643 11236999999999999999999999732 355666
Q ss_pred chhhhhhhcchhHHHHHHHHHHHH-------hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEE
Q 042193 254 GPEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVV 326 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 326 (784)
+++..+. ..++....... ...+.+++|||+|.+... ..+.|+..++..... ..+
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccCC--ceE
Confidence 5543221 12222222111 123579999999988532 234456666544332 334
Q ss_pred EEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC--CcccchhhhHHHHhcCC
Q 042193 327 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM--KLAEDVDLERVARDTHG 388 (784)
Q Consensus 327 I~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~--~~~~~~~l~~la~~t~g 388 (784)
+.+||.+..+.+++++ |. ..+.+..|+.++....++..++.. .+. +..+..++....|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 5567777888888887 54 357899999999988888766543 333 3346777776665
No 195
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.26 E-value=1.8e-10 Score=118.65 Aligned_cols=141 Identities=23% Similarity=0.223 Sum_probs=89.7
Q ss_pred CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC------------CCCCCccccCCCC
Q 042193 554 PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR------------PDVIDPALLRPGR 621 (784)
Q Consensus 554 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~------------~~~ld~allr~gR 621 (784)
|.||||||+|.|-- ..++-|-+.|+. .---+||.|||+ |.-|+..|+. |
T Consensus 292 pGVLFIDEvHmLDI--------------E~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDI--------------ECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhH--------------HHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 66888888877521 122333333432 222367778886 4456667776 6
Q ss_pred cccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 042193 622 LDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKR 700 (784)
Q Consensus 622 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 700 (784)
+ .+|...+++.++.++|++..++...+.-+. -++.|+....--|-+--.+++.-|...|.+++
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--------------- 416 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--------------- 416 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---------------
Confidence 6 467788899999999999999887665333 36777776665565655666666666666554
Q ss_pred CCCccccccCcccccHHHHHHHHhhcc-CCCCHHHHHHHH
Q 042193 701 ENPEAMEVDDVDEITAAHFEESMKYAR-RSVSDADIRKYQ 739 (784)
Q Consensus 701 ~~~~~~~~~~~~~v~~~~~~~al~~~~-~s~~~~~~~~~~ 739 (784)
...|..+|+++|-.-.. -+-|-+.++.|+
T Consensus 417 ----------~~~V~~~dVe~a~~lF~D~krSv~~v~~~~ 446 (450)
T COG1224 417 ----------SKRVEVEDVERAKELFLDVKRSVEYVEKYE 446 (450)
T ss_pred ----------CCeeehhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23688999999876542 223334444443
No 196
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.3e-10 Score=129.47 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=126.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 4677788999999999999998877531 224578999999999999999999998652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+- ..-..++.+...+ ......|+||||+|.+.. ...+.
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NA 137 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNA 137 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHH
Confidence 233332210 1123455555443 223457999999998843 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++... ..+.+|.+|+.+..+.+.+++ |. ..+.+..++..+-...++..+....+. ++..+..++..+.|
T Consensus 138 LLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777532 455666677888888877775 55 457889999988888887666543332 33346778877776
Q ss_pred cHHHHHHHHHHH
Q 042193 390 VGADLAALCTEA 401 (784)
Q Consensus 390 ~~~dl~~l~~~a 401 (784)
..+++..++..+
T Consensus 212 dLRdALnLLDQa 223 (702)
T PRK14960 212 SLRDALSLTDQA 223 (702)
T ss_pred CHHHHHHHHHHH
Confidence 344444444433
No 197
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.25 E-value=1.3e-10 Score=131.45 Aligned_cols=165 Identities=21% Similarity=0.392 Sum_probs=109.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
..+++|+||||||||+|++++++++ +..++++++.++...+..........-|..... .+++|+|||++.+..+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 455788998887665443322211122322222 4679999999998654
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHcC
Q 042193 296 REKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
.. ....++..++.+......++++++..|.. +++.+++ ||. ..+++..|+.+.|..|++..+..
T Consensus 227 ~~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 ER---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred HH---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 21 12345555555444445567766666655 5677776 775 57899999999999999988764
Q ss_pred C--CcccchhhhHHHHhcCCCcHHHHHHHHH
Q 042193 371 M--KLAEDVDLERVARDTHGYVGADLAALCT 399 (784)
Q Consensus 371 ~--~~~~~~~l~~la~~t~g~~~~dl~~l~~ 399 (784)
. .+.++ .++.++....+- .+.+...+.
T Consensus 296 ~~~~l~~e-~l~~ia~~~~~~-~R~l~~~l~ 324 (450)
T PRK00149 296 EGIDLPDE-VLEFIAKNITSN-VRELEGALN 324 (450)
T ss_pred cCCCCCHH-HHHHHHcCcCCC-HHHHHHHHH
Confidence 3 34444 377888877663 334444433
No 198
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.25 E-value=1.3e-10 Score=133.21 Aligned_cols=200 Identities=25% Similarity=0.384 Sum_probs=126.6
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCc
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAF 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~ 248 (784)
+.+.+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++.+.. +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 456677899999999999888765321 235689999999999999999997642 356
Q ss_pred EEEEechhhh-------hhhcchhHHHH---HHHHH----------HHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 249 FFLINGPEIM-------SKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 249 ~~~v~~~~l~-------~~~~g~~~~~l---~~vf~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
++.++|.... ....+.....+ ...|. ........+|||||++.+.+. ..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HH
Confidence 7888875311 00000000000 00000 011223469999999988543 23
Q ss_pred HHHHHHhhccc--------------------------cCCc-EEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHH
Q 042193 309 SQLLTLMDGLK--------------------------SRAH-VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361 (784)
Q Consensus 309 ~~Ll~~ld~~~--------------------------~~~~-vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~ 361 (784)
+.|+..++.-. .... .++.+||+.|+.+++++++ |+ .++.++.++.++..
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 34444442200 0112 3445667789999999998 76 46889999999999
Q ss_pred HHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 042193 362 EVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIR 407 (784)
Q Consensus 362 ~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~ 407 (784)
+|++..++...+. ++..++.++..+ +.++++..+++.|+..+..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Confidence 9999887665432 223355555544 3678898998888765543
No 199
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=3.3e-10 Score=130.16 Aligned_cols=187 Identities=18% Similarity=0.277 Sum_probs=127.2
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|++..++.|+..+... ..+..+||+||+|+||||+|+.+|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 4677889999999999999888777541 123458999999999999999999998663
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+ ...-..++.+.+.+ ......|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NA 138 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNA 138 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHH
Confidence 12222211 01122344444443 234557999999998852 24567
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++.- ...+.+|.+|+.+..+.+.+++ |. ..+.|..++.++-...|+..+....+. ++..+..++..+.|-
T Consensus 139 LLKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 139 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777753 3466777778888899999887 64 568899999998888888766433322 334467788887775
Q ss_pred cHHHHHHHHHH
Q 042193 390 VGADLAALCTE 400 (784)
Q Consensus 390 ~~~dl~~l~~~ 400 (784)
.+ +...++..
T Consensus 214 ~R-~Al~lldq 223 (647)
T PRK07994 214 MR-DALSLTDQ 223 (647)
T ss_pred HH-HHHHHHHH
Confidence 44 33344433
No 200
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.24 E-value=3.4e-10 Score=124.73 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=130.8
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhh--hCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcch
Q 042193 189 VGGVRKQMAQIRELVELPLRHPQLFKS--IGV-KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 264 (784)
Q Consensus 189 i~G~~~~~~~l~~~~~~~~~~~~~~~~--l~i-~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g~ 264 (784)
|.|++.+++.+...+..++..-..... -.+ .+..++||+||||||||++|+++|..++.+++.+++..+.. .|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999886665332211100000 011 23568999999999999999999999999999999987653 46665
Q ss_pred hH-HHHHHHHHH----HHhcCCeEEEeehhhhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-----------cCCcEE
Q 042193 265 SE-SNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTN---GEVERRIVSQLLTLMDGLK-----------SRAHVV 325 (784)
Q Consensus 265 ~~-~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~-----------~~~~vi 325 (784)
.. ..+..+++. .....++++||||||.+..+..... +.....+...|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 43 334444443 2334678999999999987632211 1112346778888887531 012345
Q ss_pred EEEEcCCCC-------C---------------------------------------------CCHHHHhcCCcceEEEeC
Q 042193 326 VMGATNRPN-------S---------------------------------------------IDPALRRFGRFDREIDIG 353 (784)
Q Consensus 326 vI~atn~~~-------~---------------------------------------------ld~al~r~~rf~~~i~i~ 353 (784)
+|.|+|... . +.|++. +|++..+.+.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 555555410 0 112222 6888888899
Q ss_pred CCCHHHHHHHHHH----HHc---------CCCcc-cchhhhHHHHh--cCCCcHHHHHHHHHHHHHHHH
Q 042193 354 VPDEVGRLEVFRI----HTK---------NMKLA-EDVDLERVARD--THGYVGADLAALCTEAALQCI 406 (784)
Q Consensus 354 ~p~~~~R~~il~~----~~~---------~~~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~ 406 (784)
..+.+...+|+.. ..+ +..+. ++.-++.+++. ..++-.+.+..++.......+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 9999988888862 221 11111 22235566654 344555666666665555444
No 201
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.24 E-value=5.7e-10 Score=111.68 Aligned_cols=167 Identities=22% Similarity=0.327 Sum_probs=117.1
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 256 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~ 256 (784)
.+..+.++++.|++.+++.|.+-....+.. .+..++||+|+.|||||++++++..+. +..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 356678899999999999987655432222 467899999999999999999999876 55677777655
Q ss_pred hhhhhcchhHHHHHHHHHHHH-hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCcEEEEEEcCCC
Q 042193 257 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS--RAHVVVMGATNRP 333 (784)
Q Consensus 257 l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~vivI~atn~~ 333 (784)
+.. +..+++... ...+-|||+|++.+=... .-...|...|++-.. ..+|++.+|+|+.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe~~d----------~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSFEEGD----------TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCCCCCc----------HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 532 333444433 234579999996532111 123566677776432 3578888999976
Q ss_pred CCCCHH---------------------HHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc
Q 042193 334 NSIDPA---------------------LRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA 374 (784)
Q Consensus 334 ~~ld~a---------------------l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~ 374 (784)
+.+.+. +.-..||.-.+.|..|+.++-++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 544322 22236899999999999999999999988755443
No 202
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=4.7e-10 Score=126.38 Aligned_cols=195 Identities=20% Similarity=0.270 Sum_probs=131.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL------- 251 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~------- 251 (784)
.++.+-.|+++.|++..++.++..+... ..+..+||+|||||||||+|+++|+.+++....
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 3567788999999999999888765431 234689999999999999999999998653210
Q ss_pred -----Eechhhhhh----------hcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHH
Q 042193 252 -----INGPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLL 312 (784)
Q Consensus 252 -----v~~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 312 (784)
-+|..+... ........++.+++.+.. ....+++|||+|.+.. ...+.|+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLL 149 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALL 149 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHH
Confidence 111111110 011223456777766643 2346999999998842 2345666
Q ss_pred HHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcH
Q 042193 313 TLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVG 391 (784)
Q Consensus 313 ~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 391 (784)
..++. ....+++|.+|+.++.+.+.+++ |. ..+++..++.++...+++..++..... ++..+..++..+.| ..
T Consensus 150 k~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 66664 23466777777888889888876 55 457899999999999998777654432 33447778888877 44
Q ss_pred HHHHHHHHHHH
Q 042193 392 ADLAALCTEAA 402 (784)
Q Consensus 392 ~dl~~l~~~a~ 402 (784)
+++..++..+.
T Consensus 224 R~al~~Ldkai 234 (507)
T PRK06645 224 RDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 203
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.23 E-value=6.1e-10 Score=114.25 Aligned_cols=180 Identities=17% Similarity=0.273 Sum_probs=111.8
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhH
Q 042193 190 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE 266 (784)
Q Consensus 190 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~ 266 (784)
++.+..++.+++++.. ..+.+++|+||+|||||++|+++++.+ +..++++++.++....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 4566777777776431 346789999999999999999999876 4567888887775432
Q ss_pred HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC---HHHHhc
Q 042193 267 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID---PALRRF 343 (784)
Q Consensus 267 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld---~al~r~ 343 (784)
..+++.. ....+|+|||++.+..... ....|..+++........++++++..+..++ +.+.+.
T Consensus 82 ---~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1222222 2245999999998854310 1233444444433333345554444444332 666652
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHHHcCCC--cccchhhhHHHHhcCCCcHHHHHHHHHHHHH
Q 042193 344 GRFDREIDIGVPDEVGRLEVFRIHTKNMK--LAEDVDLERVARDTHGYVGADLAALCTEAAL 403 (784)
Q Consensus 344 ~rf~~~i~i~~p~~~~R~~il~~~~~~~~--~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 403 (784)
..+...+.++.|+.+++..+++....... +..+ -+..++.. -+-+..++..+++.+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE-VADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 22346789999999999999987654333 3332 35666664 33355666666665543
No 204
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=6.2e-11 Score=127.54 Aligned_cols=176 Identities=27% Similarity=0.436 Sum_probs=120.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcc-h
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 264 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~-i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g-~ 264 (784)
-|.|+++++..+..++...+++..+...+. -.++.++||+||||||||+++++||+.++.+++.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999988766654433332221111 124589999999999999999999999999999998766553 4555 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 042193 265 SESNLRKAFEEA-------------------------------------------------------------------- 276 (784)
Q Consensus 265 ~~~~l~~vf~~a-------------------------------------------------------------------- 276 (784)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444444444333
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q 042193 277 -----------------------------------------------------------------------EKNAPSIIF 285 (784)
Q Consensus 277 -----------------------------------------------------------------------~~~~p~il~ 285 (784)
......|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012346999
Q ss_pred eehhhhhcCCCCCCchH-HHHHHHHHHHHHhhcccc--------CCcEEEEEEc----CCCCCCCHHHHhcCCcceEEEe
Q 042193 286 IDEIDSIAPKREKTNGE-VERRIVSQLLTLMDGLKS--------RAHVVVMGAT----NRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 286 iDEid~l~~~~~~~~~~-~~~~v~~~Ll~~ld~~~~--------~~~vivI~at----n~~~~ld~al~r~~rf~~~i~i 352 (784)
|||||.++.+..+...+ ...-+...||.++++-.- ..++++|++- ..|.++-|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999999765322222 223466778888876322 2466666332 24666777776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 042193 353 GVPDEVGRLEVFR 365 (784)
Q Consensus 353 ~~p~~~~R~~il~ 365 (784)
..++.++-..||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999988884
No 205
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.23 E-value=1.9e-10 Score=124.39 Aligned_cols=159 Identities=24% Similarity=0.365 Sum_probs=110.3
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
+++.+.+++++.|.++..+.++.++... ..+..+||+||||+|||++++++++.++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 3567778999999999999988877521 12445777999999999999999999988888888865
Q ss_pred hhhcchhHHHHHHHHHHH-HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 259 SKLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
.. .......+....... ....+.+++|||+|.+... .....|...++... ..+.+|.++|.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYS--KNCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcC--CCceEEEEcCChhhch
Confidence 11 111112222222111 1134689999999877321 12234445565543 3456677889888999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHH
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIH 367 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~ 367 (784)
+++++ |+. .+.++.|+.+++..+++..
T Consensus 146 ~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 99988 774 6889999999998887654
No 206
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=2.5e-10 Score=131.19 Aligned_cols=191 Identities=21% Similarity=0.230 Sum_probs=130.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEe-c-------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVK-G------- 527 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~-~------- 527 (784)
..+|+++.|++.+++.|...+.. -+.+.++||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 35789999999999999887653 134567999999999999999999998754221111 0
Q ss_pred -------------ccchhcc--cCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 528 -------------PELLTMW--FGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 528 -------------~~l~~~~--~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
++++... -.-.-..++.+.+.++.. ...|+||||+|.+.. ...+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHHH
Confidence 1111000 001134567776666433 357999999998742 3468888
Q ss_pred HHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCCH
Q 042193 589 TEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSG 667 (784)
Q Consensus 589 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~sg 667 (784)
..|+.... .+++|.+|+.++.+-+.+++ |+ ..+.|..|+.++...+++..+++.++.-+ ..+..|++.+.| +.
T Consensus 154 KtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88886433 34455555666667777776 77 47899999999999999998877765433 336677777766 66
Q ss_pred HHHHHHHHHHH
Q 042193 668 ADITEICQRAC 678 (784)
Q Consensus 668 ~di~~l~~~a~ 678 (784)
+++.+++..+.
T Consensus 228 r~al~~Ldkli 238 (598)
T PRK09111 228 RDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.22 E-value=2.3e-10 Score=127.84 Aligned_cols=168 Identities=23% Similarity=0.393 Sum_probs=108.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
..+++|+||||+|||+|++++++++ +..++++++.++...+...........|..... .+++|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCC
Confidence 4579999999999999999999987 466788998877654432221111111222111 3579999999998654
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHcC
Q 042193 296 REKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
. .....++..++.+......+|++++..|.. +++.+++ ||. ..+.+..|+.+.|..|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 112345555554444445566666666654 4566766 775 46899999999999999988765
Q ss_pred CCcc-cchhhhHHHHhcCCCcHHHHHHHHHHH
Q 042193 371 MKLA-EDVDLERVARDTHGYVGADLAALCTEA 401 (784)
Q Consensus 371 ~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 401 (784)
..+. ++..++.++....+- .+++...+...
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~l 314 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSN-VRELEGALNRL 314 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 4332 334477888776653 34555544443
No 208
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.21 E-value=4e-10 Score=115.96 Aligned_cols=189 Identities=26% Similarity=0.418 Sum_probs=118.5
Q ss_pred hhcCCCCcccccChHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc---EEEE
Q 042193 179 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---FFLI 252 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---~~~v 252 (784)
++..+-+++|.+|+++.+.+ |+.+++. ..-..++|+|||||||||||+.|+.....+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 45556677888888876544 3443332 233479999999999999999999887655 5666
Q ss_pred echhhhhhhcchhHHHHHHHHHHHHh-----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 253 NGPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 253 ~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
++.. .....++.+|+.+.. ....|||||||+.+....+ ..++... ..+.|++|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~V----E~G~I~lI 254 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHV----ENGDITLI 254 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hccccee----ccCceEEE
Confidence 5432 223467888887765 3568999999998864432 1223222 35678889
Q ss_pred EEcC--CCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHc----------CCCc----ccchhhhHHHHhcCCCcH
Q 042193 328 GATN--RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTK----------NMKL----AEDVDLERVARDTHGYVG 391 (784)
Q Consensus 328 ~atn--~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~----------~~~~----~~~~~l~~la~~t~g~~~ 391 (784)
|+|. +--.+..+|.+ |. +.+.+......+-..||..-.. .++. .++.-++.++..+.|-..
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7774 33356778876 33 2356667777777777764221 1221 123346778888888666
Q ss_pred HHHHHHHHHHHHHH
Q 042193 392 ADLAALCTEAALQC 405 (784)
Q Consensus 392 ~dl~~l~~~a~~~~ 405 (784)
..+..|--.+.+.+
T Consensus 332 ~aLN~Lems~~m~~ 345 (554)
T KOG2028|consen 332 AALNALEMSLSMFC 345 (554)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555533333333
No 209
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.2e-10 Score=130.31 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=126.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
...|+++.|.+.+++.|...+... +...++||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 457899999999999988776531 234569999999999999999999987542
Q ss_pred ------------EEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHH
Q 042193 522 ------------FVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLN 585 (784)
Q Consensus 522 ------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 585 (784)
++.++.. ....-..++.+...+... ...|+||||+|.+. ....+
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~n 139 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFN 139 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHH
Confidence 2222211 123345677777766532 34699999999863 34568
Q ss_pred HHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCC
Q 042193 586 QLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHG 664 (784)
Q Consensus 586 ~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g 664 (784)
.||..|+.. ...+++|++|+.++.+-+.+.+ |+ ..+.|+.++.++....+...+++.++.- +..+..+++.+.|
T Consensus 140 aLLK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 899999853 3456666677778888888876 77 4678888888887777777766654332 2337778887776
Q ss_pred CCHHHHHHHHHH
Q 042193 665 FSGADITEICQR 676 (784)
Q Consensus 665 ~sg~di~~l~~~ 676 (784)
+.+++.++++.
T Consensus 215 -~lr~A~~lLek 225 (620)
T PRK14948 215 -GLRDAESLLDQ 225 (620)
T ss_pred -CHHHHHHHHHH
Confidence 33455555544
No 210
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.4e-10 Score=128.38 Aligned_cols=188 Identities=17% Similarity=0.238 Sum_probs=124.9
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+.+|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 4678889999999999999998887541 123468999999999999999999998652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+ ...-..++.+.+.+. .....|++|||+|.+... ..+.
T Consensus 76 C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~na 138 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNA 138 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHH
Confidence 23333221 112223555554432 234569999999988532 3456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++... ..+.+|.+|+++..+.+.+++ |. ..+++..++..+-...++..+....+. ++..+..++..+.|
T Consensus 139 LLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777543 356666677888888888776 44 335778888777666666655443332 33346777777766
Q ss_pred cHHHHHHHHHHH
Q 042193 390 VGADLAALCTEA 401 (784)
Q Consensus 390 ~~~dl~~l~~~a 401 (784)
...++..++..+
T Consensus 213 slR~al~lLdq~ 224 (509)
T PRK14958 213 SVRDALSLLDQS 224 (509)
T ss_pred cHHHHHHHHHHH
Confidence 445555555444
No 211
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.21 E-value=4.2e-10 Score=128.83 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=115.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CcEEEEechh
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG----------AFFFLINGPE 256 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~----------~~~~~v~~~~ 256 (784)
+.|.|-++++++|..++.-.+. +-.++..++|+|+||||||++++.+.+++. ..+++|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5688888888888877653222 112333457999999999999999987761 4568899954
Q ss_pred hhhh----------h------cc-hhHHHHHHHHHHHHh--cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 042193 257 IMSK----------L------AG-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG 317 (784)
Q Consensus 257 l~~~----------~------~g-~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 317 (784)
+... . .+ .....+..+|..... ....||+|||||.|..+. ..++-.|..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 2211 0 01 122345556665422 235699999999997642 223334444332
Q ss_pred cccCCcEEEEEEcCC---CCCCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHHHcCCC-cccchhhhHHHHhcC
Q 042193 318 LKSRAHVVVMGATNR---PNSIDPALRRFGRFDR-EIDIGVPDEVGRLEVFRIHTKNMK-LAEDVDLERVARDTH 387 (784)
Q Consensus 318 ~~~~~~vivI~atn~---~~~ld~al~r~~rf~~-~i~i~~p~~~~R~~il~~~~~~~~-~~~~~~l~~la~~t~ 387 (784)
.....+++||++|. ++.+++.+++ ||.. ++.|++++.++..+||+..+.... +.++..+..+|+...
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 13457899999986 4556777776 5543 478899999999999998876532 223333555655443
No 212
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.21 E-value=4.7e-11 Score=125.64 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=98.9
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc--ccCcchHHH----------HHHHHHhhhCCCeEE
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM--WFGESEANV----------REIFDKARQSAPCVL 557 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~--~~g~~~~~i----------~~~f~~a~~~~p~vl 557 (784)
++...++++|.||||||||++++.+|..++.+++.|++...++. ++|...-.+ .-.+-.|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 44456679999999999999999999999999999987765544 444321110 112233332 35789
Q ss_pred EEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC------------CCCCCcEEEEEecCCCC------------CCC
Q 042193 558 FFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG------------MNAKKTVFIIGATNRPD------------VID 613 (784)
Q Consensus 558 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~------------~~~~~~v~vi~aTn~~~------------~ld 613 (784)
++||||..- ..+++.|...|+. +.......||||+|..+ .++
T Consensus 139 llDEin~a~--------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 139 CFDEYDAGR--------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred EechhhccC--------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 999999753 2344444444442 11234678999999864 468
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcc
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRK 646 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~ 646 (784)
+|++. ||-.++.+++|+.++-.+|+......
T Consensus 205 ~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 205 QAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred HHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 89998 99888899999999999999876543
No 213
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5e-10 Score=128.95 Aligned_cols=187 Identities=19% Similarity=0.256 Sum_probs=125.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|+..+.. -+.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 45789999999999998876542 2445679999999999999999999987542
Q ss_pred ------------------EEEEecccchhcccCcchHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCc
Q 042193 522 ------------------FVSVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGA 579 (784)
Q Consensus 522 ------------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~ 579 (784)
++.+++... ..-..|+.+.+.. ......|++|||+|.+..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------ 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------
Confidence 111211110 1123455554444 223456999999998742
Q ss_pred hHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHH
Q 042193 580 ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSAL 658 (784)
Q Consensus 580 ~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 658 (784)
...+.||..|+.... ..++|.+|+.++.|-+.+.+ |. .++.|.+++.++....+...+++.++. ++..+..|
T Consensus 142 --~a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~L 214 (620)
T PRK14954 142 --AAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLI 214 (620)
T ss_pred --HHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 246788888886533 34444455666777778776 66 588999999999888888877765543 23347778
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 042193 659 ARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 659 a~~~~g~sg~di~~l~~~a~~~ 680 (784)
++.+.| +.+++.+.+......
T Consensus 215 a~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 215 ARKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred HHHhCC-CHHHHHHHHHHHHHh
Confidence 887766 555555555544433
No 214
>PRK09087 hypothetical protein; Validated
Probab=99.20 E-value=1.2e-10 Score=118.77 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=111.6
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCC
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVG 574 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~ 574 (784)
+.++|+||+|+|||||+++++...+..+ ++..++... ++..... ..++|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhhc---CeEEEECCCCCCC-------
Confidence 3489999999999999999998765543 333222211 1111111 3889999997521
Q ss_pred CCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHHHhccCCC
Q 042193 575 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI---DPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPI 649 (784)
Q Consensus 575 ~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~ 649 (784)
. . .+|+..++.....++.+||+++..|..+ .+.+.+ ||. .++.+.+|+.++|.+|++..++..++
T Consensus 102 ----~-~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 ----D-E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred ----C-H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 0 1 3355555555555667888888777533 677776 775 88899999999999999999977655
Q ss_pred CCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 650 SPD-VDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 650 ~~~-~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
.-+ .-++.|++...+ +-+.+..++......++..+ ..||...++++++.+
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~--------------------------~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK--------------------------SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC--------------------------CCCCHHHHHHHHHhh
Confidence 432 237778887664 33444444444333332211 358888888888764
No 215
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=7.4e-10 Score=123.72 Aligned_cols=189 Identities=21% Similarity=0.258 Sum_probs=128.6
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
.++.+.+|+++.|++..++.++.++... ..+..+||+||+|+||||+|+.+|+.+++.
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 3567788999999999999888776541 235589999999999999999999976431
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+- ..-..++.+.+.+.. ....+++|||+|.+.. ...+.
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~Na 135 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNA 135 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHH
Confidence 233443211 122346666665532 3456999999998842 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++... ..+.+|.+|+.++.+.+.+++ |. ..+++..++.++....++..+....+. ++..+..++..+.|
T Consensus 136 LLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 136 LLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777533 456667777888888888877 55 347889999988888888766543332 33447778888776
Q ss_pred cHHHHHHHHHHHH
Q 042193 390 VGADLAALCTEAA 402 (784)
Q Consensus 390 ~~~dl~~l~~~a~ 402 (784)
...++..++..+.
T Consensus 210 slR~alslLdqli 222 (491)
T PRK14964 210 SMRNALFLLEQAA 222 (491)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555554443
No 216
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.19 E-value=7.2e-11 Score=131.16 Aligned_cols=194 Identities=25% Similarity=0.340 Sum_probs=140.1
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcE-------EE----
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------VS---- 524 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~-------i~---- 524 (784)
...|+++.|++.+.+.|...+... +...+.||.||.|+|||++||.+|..+++.- ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 456899999999999999887632 3456799999999999999999999875421 00
Q ss_pred --Eec---ccchh--cccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC
Q 042193 525 --VKG---PELLT--MWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG 593 (784)
Q Consensus 525 --v~~---~~l~~--~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 593 (784)
++. .++.. .-...+-..+|.+-+++. ...+.|.+|||+|.|. ....|.||..++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc
Confidence 100 11100 000112345666666654 3456799999999874 3467999999885
Q ss_pred CCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHcCCCCHHHHHH
Q 042193 594 MNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITE 672 (784)
Q Consensus 594 ~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~sg~di~~ 672 (784)
+...|++|.||..|+.+.+.+++ |+ ....|...+.++....|...+.+.++.-+.+ +..+|+..+| |.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 44578888888889999998886 55 3456888888899999999998887775544 6677777776 8889999
Q ss_pred HHHHHHHHH
Q 042193 673 ICQRACKYA 681 (784)
Q Consensus 673 l~~~a~~~a 681 (784)
++..|....
T Consensus 220 lLDq~i~~~ 228 (515)
T COG2812 220 LLDQAIAFG 228 (515)
T ss_pred HHHHHHHcc
Confidence 988887654
No 217
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.19 E-value=9.4e-11 Score=126.24 Aligned_cols=176 Identities=26% Similarity=0.414 Sum_probs=120.6
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcc-h
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 264 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i-~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g-~ 264 (784)
.|.|++++++.+..++...+++..+...+.. ..+.++||+||||||||++|+.||+.++.+++.+++.++.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999987776443322221111111 12578999999999999999999999999999999877664 4666 3
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 042193 265 SESNLRKAFEEAE------------------------------------------------------------------- 277 (784)
Q Consensus 265 ~~~~l~~vf~~a~------------------------------------------------------------------- 277 (784)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3444444444440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEe
Q 042193 278 -----------------------------------------------------------------------KNAPSIIFI 286 (784)
Q Consensus 278 -----------------------------------------------------------------------~~~p~il~i 286 (784)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ehhhhhcCCCCCCchH-HHHHHHHHHHHHhhccc--------cCCcEEEEEE--c--CCCCCCCHHHHhcCCcceEEEeC
Q 042193 287 DEIDSIAPKREKTNGE-VERRIVSQLLTLMDGLK--------SRAHVVVMGA--T--NRPNSIDPALRRFGRFDREIDIG 353 (784)
Q Consensus 287 DEid~l~~~~~~~~~~-~~~~v~~~Ll~~ld~~~--------~~~~vivI~a--t--n~~~~ld~al~r~~rf~~~i~i~ 353 (784)
||||.++.+.+....+ ...-+...||.++++-. ...++++|++ - ..|.++-|.|.. ||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 9999999775422212 22346677888887632 1246666633 2 246667788764 999999999
Q ss_pred CCCHHHHHHHHH
Q 042193 354 VPDEVGRLEVFR 365 (784)
Q Consensus 354 ~p~~~~R~~il~ 365 (784)
.++.++-..||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999988884
No 218
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.18 E-value=1.4e-09 Score=118.81 Aligned_cols=181 Identities=22% Similarity=0.328 Sum_probs=116.3
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA-----FFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~~~v~ 253 (784)
+++.+.+++++.|.+..++.+.+++..+ ...+++|+||||||||++|+++++++.. .++.++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 3566778899999999999988876531 1236999999999999999999998742 357778
Q ss_pred chhhhhhhc-------------ch-------hHHHHHHHHHHHHh-----cCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 254 GPEIMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 254 ~~~l~~~~~-------------g~-------~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
+.++..... +. ....++.+.+.... ..+.++++||++.+.+. ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQ 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HH
Confidence 766542210 00 11223333333322 22469999999877421 23
Q ss_pred HHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcC
Q 042193 309 SQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTH 387 (784)
Q Consensus 309 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~ 387 (784)
..|..+++..... . .+|.+++.+..+.+.+++ |. ..+.+.+|+.++...+++..+....+. ++..+..++..+.
T Consensus 143 ~~L~~~le~~~~~-~-~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQYSRT-C-RFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhccCC-C-eEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 3456666654332 2 333355555566677766 54 458899999999999998776544332 3344677777664
Q ss_pred C
Q 042193 388 G 388 (784)
Q Consensus 388 g 388 (784)
|
T Consensus 218 g 218 (337)
T PRK12402 218 G 218 (337)
T ss_pred C
Confidence 4
No 219
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=6.8e-10 Score=126.95 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=127.4
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE---------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF--------- 249 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------- 249 (784)
.++.+.+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+++++.+++..
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 4677889999999999999998887641 2345799999999999999999999876431
Q ss_pred ---------------EEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 250 ---------------FLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 250 ---------------~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
+.+++.. ......++.++..+. .....|+||||+|.+.. ...+.
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NA 138 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNA 138 (709)
T ss_pred cHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHH
Confidence 1121110 112234666665442 23457999999987631 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++-..+|+..+....+. ++..+..|+..+.|-
T Consensus 139 LLKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs 213 (709)
T PRK08691 139 MLKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS 213 (709)
T ss_pred HHHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC
Confidence 777777533 356666677888888888775 55 346788899988888888776654432 333467777777653
Q ss_pred cHHHHHHHHHHHH
Q 042193 390 VGADLAALCTEAA 402 (784)
Q Consensus 390 ~~~dl~~l~~~a~ 402 (784)
.+++..++..+.
T Consensus 214 -lRdAlnLLDqai 225 (709)
T PRK08691 214 -MRDALSLLDQAI 225 (709)
T ss_pred -HHHHHHHHHHHH
Confidence 455555554443
No 220
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=3.4e-10 Score=122.54 Aligned_cols=183 Identities=22% Similarity=0.264 Sum_probs=118.2
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-----CcEEEEecccch
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFVSVKGPELL 531 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~i~v~~~~l~ 531 (784)
.+|+++.|.+++++.+...+... ...+++|+||||||||++++++++++. .+++.++.++-.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 57888999999988888766421 112489999999999999999999863 344555443311
Q ss_pred hcccCcchHHHHHHHH-Hhhh-----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEe
Q 042193 532 TMWFGESEANVREIFD-KARQ-----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA 605 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~-~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~a 605 (784)
....++..+. .+.. ..+.+++|||+|.+.. ...+.|+..++..... ..+|.+
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~~--~~lIl~ 138 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQN--TRFILS 138 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCCC--CeEEEE
Confidence 1111222221 1211 2356999999998743 2245666677654432 344446
Q ss_pred cCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 606 TNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 606 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
+|.+..+.+++.+ |+. ++.|++|+.++...+++..+++.++. .+..+..+++.+.| +.+.+.+.++.++
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 6666667667776 765 58999999999999999988776653 23347788887765 4444444444433
No 221
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.17 E-value=5.7e-10 Score=113.20 Aligned_cols=180 Identities=19% Similarity=0.253 Sum_probs=116.4
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------EEEE
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF------FFLI 252 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~------~~~v 252 (784)
+.+.+-+++++.|.+..++.+...+.- ....++|||||||||||+.|+++|.+++.+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 467778899999999999988776643 124589999999999999999999998752 2334
Q ss_pred echhhhhhhcchhHHHHHHHHHHHHh---------cC-CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 042193 253 NGPEIMSKLAGESESNLRKAFEEAEK---------NA-PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA 322 (784)
Q Consensus 253 ~~~~l~~~~~g~~~~~l~~vf~~a~~---------~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 322 (784)
|.++..+.... ..++. -|..... +. +-|+++||.|.+.. .....|...|+....
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--
Confidence 44443332211 11111 1111111 12 26999999998863 244567788887554
Q ss_pred cEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 323 HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 323 ~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
.+.+|..||..+.+...+.+ |..+ +.|+....+.-...|+..+..-.+. ++..++.++..+.|-.
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 45566678999888777765 5433 4566666666666777665443332 2334777888877743
No 222
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.17 E-value=1.7e-10 Score=123.44 Aligned_cols=160 Identities=21% Similarity=0.381 Sum_probs=102.5
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-------C--cEEEEe
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-------A--NFVSVK 526 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-------~--~~i~v~ 526 (784)
.+.|.++.|++++++.|.-....+ ...++||+|+||+|||++|++++..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 456889999999988776432211 124699999999999999999999872 2 222111
Q ss_pred c-c--------cchh---------------cccCcc--hHHH---HHHHHHh--hhCCCeEEEEeccchhhhhcCCCCCC
Q 042193 527 G-P--------ELLT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGASVGD 575 (784)
Q Consensus 527 ~-~--------~l~~---------------~~~g~~--~~~i---~~~f~~a--~~~~p~vl~iDEid~l~~~r~~~~~~ 575 (784)
+ + ++.. ..+|.. ++.+ ...|+.- ....-.++|+|||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 0 1100 011100 0000 0012110 00111399999999853
Q ss_pred CCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCC-CCCccccCCCCcccccccCCCCH-HHHHHHHHH
Q 042193 576 AGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-VIDPALLRPGRLDQLIYIPLPDE-ASRLQIFKA 642 (784)
Q Consensus 576 ~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~~r~~il~~ 642 (784)
..+++.|+..|+... ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 457788888886432 234689999998754 58899998 9999999998866 899999987
Q ss_pred Hh
Q 042193 643 CL 644 (784)
Q Consensus 643 ~~ 644 (784)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 54
No 223
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=5.4e-10 Score=129.83 Aligned_cols=185 Identities=22% Similarity=0.309 Sum_probs=123.7
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------- 521 (784)
..+|+++.|++.+++.|...+.. + ..+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 45789999999999998776642 1 234558999999999999999999986421
Q ss_pred -----------EEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHH
Q 042193 522 -----------FVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQ 586 (784)
Q Consensus 522 -----------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 586 (784)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ..++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------AAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------HHHHH
Confidence 12222211 011233444443322 23356999999998642 34678
Q ss_pred HHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCC
Q 042193 587 LLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 665 (784)
Q Consensus 587 ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~ 665 (784)
||..|+.... ..++|.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++..++..++.- +..+..|++.+.|
T Consensus 140 LLk~LEepp~--~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPPP--HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCCC--CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888886542 34555555666667777766 664 688999999999999888887766542 2336778877766
Q ss_pred CHHHHHHHHHHHH
Q 042193 666 SGADITEICQRAC 678 (784)
Q Consensus 666 sg~di~~l~~~a~ 678 (784)
+.+++.+.++..+
T Consensus 214 dlr~al~~LekL~ 226 (585)
T PRK14950 214 SMRDAENLLQQLA 226 (585)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666543
No 224
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.17 E-value=2.1e-09 Score=109.12 Aligned_cols=166 Identities=24% Similarity=0.423 Sum_probs=103.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCC
Q 042193 222 KGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 296 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 296 (784)
..++||||+|+|||+|++++++++ +..++++++.++...+.......--.-|..-. ....+++||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc-
Confidence 468999999999999999999875 45678898888766543322211111222222 24579999999998633
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC---CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC-
Q 042193 297 EKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK- 372 (784)
Q Consensus 297 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~- 372 (784)
......|..+++.+...++.+|+++...|..+ ++.+++.-.....+.+..|+.+.|..|++..+....
T Consensus 113 --------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 113 --------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred --------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 23456677777777777777777776776654 677776222344788999999999999997765443
Q ss_pred -cccchhhhHHHHhcCCCcHHHHHHHHH
Q 042193 373 -LAEDVDLERVARDTHGYVGADLAALCT 399 (784)
Q Consensus 373 -~~~~~~l~~la~~t~g~~~~dl~~l~~ 399 (784)
+.+++ ++.++....+ ..+++..++.
T Consensus 185 ~l~~~v-~~~l~~~~~~-~~r~L~~~l~ 210 (219)
T PF00308_consen 185 ELPEEV-IEYLARRFRR-DVRELEGALN 210 (219)
T ss_dssp -S-HHH-HHHHHHHTTS-SHHHHHHHHH
T ss_pred CCcHHH-HHHHHHhhcC-CHHHHHHHHH
Confidence 43333 5566666543 3344444443
No 225
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=7.6e-10 Score=126.03 Aligned_cols=179 Identities=19% Similarity=0.232 Sum_probs=120.6
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+.+|++|.|++..++.|..++... .....+||+||+||||||+|+.+|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 4677888999999999999888877541 113479999999999999999999998652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHH----HHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++..- ..-..++.+.+. +......|+||||+|.+.. ...+.
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~na 138 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNA 138 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHH
Confidence 233333110 011223332222 2234457999999998842 23466
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+++|.+|+.+..+.+.+++ |+ ..+.|..++.++-..+|+..+....+ .++..+..++..+.|-
T Consensus 139 LLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 139 LLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777653 2467777788888888888776 55 35789999999888888876554332 2333467777777764
Q ss_pred cH
Q 042193 390 VG 391 (784)
Q Consensus 390 ~~ 391 (784)
..
T Consensus 214 lR 215 (624)
T PRK14959 214 VR 215 (624)
T ss_pred HH
Confidence 43
No 226
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=4.5e-10 Score=125.79 Aligned_cols=164 Identities=21% Similarity=0.352 Sum_probs=106.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhH-HHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 222 KGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
.+++||||||||||+|++++++++ +..++++++.++......... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 346788888877655432221 11222 22222235789999999988644
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC---CHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 296 REKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
.. ....+...++.+......+|+++.+.|..+ .+.+++ || ...+.+..|+.+.|..|++..+..
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 21 122344455544444556677666677654 445555 55 456789999999999999987754
Q ss_pred --CCcccchhhhHHHHhcCCCcHHHHHHHHH
Q 042193 371 --MKLAEDVDLERVARDTHGYVGADLAALCT 399 (784)
Q Consensus 371 --~~~~~~~~l~~la~~t~g~~~~dl~~l~~ 399 (784)
+.+.+++ +..++....+- .+.+...+.
T Consensus 279 ~~~~l~~ev-~~~Ia~~~~~~-~R~L~g~l~ 307 (440)
T PRK14088 279 EHGELPEEV-LNFVAENVDDN-LRRLRGAII 307 (440)
T ss_pred cCCCCCHHH-HHHHHhccccC-HHHHHHHHH
Confidence 4444443 77787777653 334444443
No 227
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.3e-09 Score=123.38 Aligned_cols=178 Identities=21% Similarity=0.285 Sum_probs=121.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+..|++|.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4677889999999999999998887641 224457999999999999999999988531
Q ss_pred -------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHH
Q 042193 249 -------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 311 (784)
Q Consensus 249 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 311 (784)
++.+++.+ ...-..++.+.+.+. ...+.++||||+|.+. ....+.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHH
Confidence 23333321 111233444433332 2356799999998663 2234566
Q ss_pred HHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 312 LTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 312 l~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
+..++.. ...+++|.+++.+..+.+.+++ |. ..+.+..|+.++-...++..+....+. ++..+..++..+.|-.
T Consensus 137 Lk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 137 LKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 6666643 2356666677888889998886 55 358999999999888888776543332 3334777888877643
No 228
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.16 E-value=2.6e-10 Score=107.76 Aligned_cols=122 Identities=46% Similarity=0.693 Sum_probs=84.3
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHH---HHHHHHHhhhCCCeEEEEeccchhh
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 566 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~---i~~~f~~a~~~~p~vl~iDEid~l~ 566 (784)
...+++++||||||||++++.++... +.+++.++..+....+....... ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34569999999999999999999998 78889888877654332221111 1222334445567899999999862
Q ss_pred hhcCCCCCCCCCchHHHHHHHHHHhhCCCC----CCcEEEEEecCCCC--CCCccccCCCCcccccccCC
Q 042193 567 TQRGASVGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGATNRPD--VIDPALLRPGRLDQLIYIPL 630 (784)
Q Consensus 567 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~----~~~v~vi~aTn~~~--~ld~allr~gRf~~~i~~~~ 630 (784)
. .....++..+..... ..++.+|++||... .+++.+.+ ||+..+.+++
T Consensus 98 ~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 2 223455555554432 35788889998877 67777776 9987777763
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=99.16 E-value=1.2e-09 Score=112.07 Aligned_cols=148 Identities=13% Similarity=0.237 Sum_probs=96.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCC
Q 042193 222 KGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 298 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 298 (784)
..++|+||||||||+|++++|+++ +....+++..+.. .....+++.. ....+++|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 2334444432211 1111223322 2357999999998865421
Q ss_pred CchHHHHHHHHHHHHHhhccccCC-cEEEEEEcCCCCCCC---HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHc--CCC
Q 042193 299 TNGEVERRIVSQLLTLMDGLKSRA-HVVVMGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVFRIHTK--NMK 372 (784)
Q Consensus 299 ~~~~~~~~v~~~Ll~~ld~~~~~~-~vivI~atn~~~~ld---~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~ 372 (784)
....|..+++...... .+++++++..|..++ +.+++..++...+.+..|+.++|.+|++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1223555555554444 355666666676654 78887555667889999999999999996664 344
Q ss_pred cccchhhhHHHHhcCCC
Q 042193 373 LAEDVDLERVARDTHGY 389 (784)
Q Consensus 373 ~~~~~~l~~la~~t~g~ 389 (784)
+.+++ ++.++....+-
T Consensus 181 l~~~v-~~~L~~~~~~d 196 (229)
T PRK06893 181 LSDEV-ANFLLKRLDRD 196 (229)
T ss_pred CCHHH-HHHHHHhccCC
Confidence 44443 67777777654
No 230
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.15 E-value=3.3e-09 Score=109.14 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=101.0
Q ss_pred ChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhhcchhHH
Q 042193 191 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSKLAGESES 267 (784)
Q Consensus 191 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---~~~~~v~~~~l~~~~~g~~~~ 267 (784)
+....+..++++... ....+++|+||||||||+|++++++.+. ....+++..+....
T Consensus 28 ~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~------- 87 (235)
T PRK08084 28 DNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF------- 87 (235)
T ss_pred ccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-------
Confidence 455556666655432 1235799999999999999999998764 33455554432211
Q ss_pred HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCc-EEEEEEcCCCCC---CCHHHHhc
Q 042193 268 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAH-VVVMGATNRPNS---IDPALRRF 343 (784)
Q Consensus 268 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~-vivI~atn~~~~---ld~al~r~ 343 (784)
...+++.... ..+++|||++.+..+. . ....|...++.....++ -+++++++.|.. +.|.+++
T Consensus 88 -~~~~~~~~~~--~dlliiDdi~~~~~~~-----~----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S- 154 (235)
T PRK08084 88 -VPEVLEGMEQ--LSLVCIDNIECIAGDE-----L----WEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS- 154 (235)
T ss_pred -hHHHHHHhhh--CCEEEEeChhhhcCCH-----H----HHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH-
Confidence 1122222222 2589999999885432 1 12234444444333333 355555566655 5788988
Q ss_pred CCcc--eEEEeCCCCHHHHHHHHHHHHcC--CCcccchhhhHHHHhcCCC
Q 042193 344 GRFD--REIDIGVPDEVGRLEVFRIHTKN--MKLAEDVDLERVARDTHGY 389 (784)
Q Consensus 344 ~rf~--~~i~i~~p~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g~ 389 (784)
|+. ..+.+..|+.+++.++++..... +.+.+++ ++.++....+-
T Consensus 155 -Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~d 202 (235)
T PRK08084 155 -RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDRE 202 (235)
T ss_pred -HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcCC
Confidence 664 67899999999999999875543 3444443 67777777764
No 231
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.7e-09 Score=123.68 Aligned_cols=187 Identities=17% Similarity=0.237 Sum_probs=122.4
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 4567788999999999999998887541 123458999999999999999999987642
Q ss_pred ----------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 249 ----------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 249 ----------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
++.+++... ..-..++.+.+.+ ......|++|||+|.+.. ...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHH
Confidence 122222110 0122333333332 233456999999998842 245
Q ss_pred HHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcC
Q 042193 309 SQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTH 387 (784)
Q Consensus 309 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~ 387 (784)
+.|+..|+.. ...+++|.+|+.++.+.+.+++ |. ..++|..++..+-.+.+...+....+. ++..+..++..+.
T Consensus 136 NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 136 NALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6677777753 3467777777888889888887 53 468889998888888887766554332 2333555666555
Q ss_pred CCcHHHHHHHHHH
Q 042193 388 GYVGADLAALCTE 400 (784)
Q Consensus 388 g~~~~dl~~l~~~ 400 (784)
| ..++...++..
T Consensus 211 G-dlR~aln~Ldq 222 (584)
T PRK14952 211 G-SPRDTLSVLDQ 222 (584)
T ss_pred C-CHHHHHHHHHH
Confidence 4 33444444443
No 232
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.4e-09 Score=129.23 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=122.2
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+.+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+.||+.+++.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4677889999999999999988877541 123458999999999999999999998642
Q ss_pred ----------------EEEEechhhhhhhcchhHHHHHHHHHH----HHhcCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 249 ----------------FFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 249 ----------------~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 122222110 011233333322 3334567999999999853 235
Q ss_pred HHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcC
Q 042193 309 SQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTH 387 (784)
Q Consensus 309 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~ 387 (784)
+.|+..|+... ..+++|.+|+.++.|-+.+++ |. ..+.|..+..++-..+|+..++...+. ++..+..++....
T Consensus 138 NaLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67888887643 356666677778888888887 54 457888888888888887766543332 2333566666666
Q ss_pred CCcHHHHHHHHH
Q 042193 388 GYVGADLAALCT 399 (784)
Q Consensus 388 g~~~~dl~~l~~ 399 (784)
|- ..++..++.
T Consensus 213 Gd-lR~Al~eLE 223 (824)
T PRK07764 213 GS-VRDSLSVLD 223 (824)
T ss_pred CC-HHHHHHHHH
Confidence 53 333333333
No 233
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.2e-09 Score=123.79 Aligned_cols=177 Identities=18% Similarity=0.247 Sum_probs=120.5
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+.+.+-.|+++.|++..++.+..++... ..+..+||+||+|+||||+|+.+|+.+.+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4677888999999999999888776431 224579999999999999999999987531
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.. ...-..++.+...+.. ....+++|||+|.+.. ...+.
T Consensus 76 C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~Na 138 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNA 138 (605)
T ss_pred cHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHH
Confidence 12222211 0112235555544432 2346999999998842 13456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+++|.+|+.+..+.+.+++ |.. .+++..++..+...+++..+..... .++..+..++..+.|-
T Consensus 139 LLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 139 LLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 77777753 3356777778888899988887 553 5789999999888888876544332 2233467777777764
No 234
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=1.2e-09 Score=103.25 Aligned_cols=121 Identities=48% Similarity=0.753 Sum_probs=79.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHHH---HHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
.+.+++|+||||||||++++.+++.+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 77888888876654332221111 1222333444567899999998772
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccc----CCcEEEEEEcCCCC--CCCHHHHhcCCcceEEEeC
Q 042193 294 PKREKTNGEVERRIVSQLLTLMDGLKS----RAHVVVMGATNRPN--SIDPALRRFGRFDREIDIG 353 (784)
Q Consensus 294 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~vivI~atn~~~--~ld~al~r~~rf~~~i~i~ 353 (784)
. .....++..+..... ...+.+|++++... .+++.+.. |++..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 112334444444332 35677888888776 56777765 777666554
No 235
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.14 E-value=1.1e-09 Score=119.92 Aligned_cols=217 Identities=24% Similarity=0.343 Sum_probs=130.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhh----hhhhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hh
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQL----FKSIGV-KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KL 261 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~----~~~l~i-~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~ 261 (784)
-|.|++++++.+...+...+..-.. ...-++ ....++||+||||||||++|+++|..++.++..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3899999999887665321111000 000011 12358999999999999999999999999999888877642 46
Q ss_pred cchh-HHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCc---hHHHHHHHHHHHHHhhcccc-----------CC
Q 042193 262 AGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTN---GEVERRIVSQLLTLMDGLKS-----------RA 322 (784)
Q Consensus 262 ~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~-----------~~ 322 (784)
.|.. +..+...++.+ ....++++||||+|.+.++..... +.....+.+.|+..|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 34444444422 234678999999999987543221 11112466778888865421 12
Q ss_pred cEEEEEEcCCCC--------------------------C------------------------CCHHHHhcCCcceEEEe
Q 042193 323 HVVVMGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDI 352 (784)
Q Consensus 323 ~vivI~atn~~~--------------------------~------------------------ld~al~r~~rf~~~i~i 352 (784)
+.++|.|+|-.- . +.|++ .+|++..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeec
Confidence 456666666510 0 11222 2688888888
Q ss_pred CCCCHHHHHHHHHHH----Hc---------CCCcc-cchhhhHHHHh--cCCCcHHHHHHHHHHHHHHHH
Q 042193 353 GVPDEVGRLEVFRIH----TK---------NMKLA-EDVDLERVARD--THGYVGADLAALCTEAALQCI 406 (784)
Q Consensus 353 ~~p~~~~R~~il~~~----~~---------~~~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~ 406 (784)
...+.+...+|+... .+ +..+. ++.-++.+++. ...|-++.+..+++...+..+
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 899999888887642 11 11111 22235566654 334555667666666655444
No 236
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.14 E-value=5.8e-10 Score=126.13 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
++.+.++..+.|+|++|+|||||++.|++..
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456788999999999999999999999886
No 237
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.6e-09 Score=121.18 Aligned_cols=187 Identities=16% Similarity=0.248 Sum_probs=121.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+..|+++.|++..++.+...+... ..+..+||+||+|+||||+|+.+|+.+.+.
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 4677888999999999999888777541 123458999999999999999999988641
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++..- ..-..++.+++.+. .....|++|||+|.+.. ...+.
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~na 138 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNA 138 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHH
Confidence 222222110 01123344444332 23457999999988742 24456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+.+|.+|+.+..+.+.+++ |. ..+++..++.++-...++..+....+. ++..+..++..+.|-
T Consensus 139 LLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 139 LLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777753 2456666667778888878776 55 558899999988777777655543322 333466777777653
Q ss_pred cHHHHHHHHHH
Q 042193 390 VGADLAALCTE 400 (784)
Q Consensus 390 ~~~dl~~l~~~ 400 (784)
.+++..++..
T Consensus 214 -lR~alnlLek 223 (546)
T PRK14957 214 -LRDALSLLDQ 223 (546)
T ss_pred -HHHHHHHHHH
Confidence 3344344433
No 238
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=1e-09 Score=124.36 Aligned_cols=167 Identities=16% Similarity=0.296 Sum_probs=108.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCC
Q 042193 222 KGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 296 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 296 (784)
+.++|||++|||||+|++++++.+ +..++++++.++...+...........|..-.. .+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999986 456788998887766544332222223433222 36899999999987543
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC---CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC-
Q 042193 297 EKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK- 372 (784)
Q Consensus 297 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~- 372 (784)
. ....|..+++.+.....-+||++...|. .+++.|++.......+.+..|+.+.|..||+.++....
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1234555555554544445554444443 46788887333355678999999999999998776543
Q ss_pred -cccchhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 373 -LAEDVDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 373 -~~~~~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
+..+ -++.|+....+- ...|..++..
T Consensus 465 ~l~~e-Vi~yLa~r~~rn-vR~LegaL~r 491 (617)
T PRK14086 465 NAPPE-VLEFIASRISRN-IRELEGALIR 491 (617)
T ss_pred CCCHH-HHHHHHHhccCC-HHHHHHHHHH
Confidence 3333 367777766543 3444444433
No 239
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=1.8e-09 Score=123.86 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=124.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE---------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF--------- 249 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------- 249 (784)
+++.+-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.-
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 4677889999999999999998877641 1234689999999999999999999986521
Q ss_pred ----EEEechhhhh----------hhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHH
Q 042193 250 ----FLINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 311 (784)
Q Consensus 250 ----~~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 311 (784)
..-+|..+.. ......-..++.+.+.+.. ....|++|||+|.+... ..+.|
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaL 144 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAM 144 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHH
Confidence 0001111110 0000112345555554322 23469999999988532 24556
Q ss_pred HHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 312 LTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 312 l~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
+..++.. ...+.+|.+|+++..+.+.+++ |. ..+++..++.++....|+..+....+. ++..+..++..+.| .
T Consensus 145 LKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6666652 3456666677788888888776 55 457899999988888887766543332 23346777887776 3
Q ss_pred HHHHHHHHH
Q 042193 391 GADLAALCT 399 (784)
Q Consensus 391 ~~dl~~l~~ 399 (784)
.+++..++.
T Consensus 219 lR~al~lLd 227 (618)
T PRK14951 219 MRDALSLTD 227 (618)
T ss_pred HHHHHHHHH
Confidence 344444443
No 240
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.13 E-value=1.3e-09 Score=113.99 Aligned_cols=132 Identities=25% Similarity=0.316 Sum_probs=90.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech------hhhhhhcchhHHHH---------------------HHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIMSKLAGESESNL---------------------RKAF 273 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~------~l~~~~~g~~~~~l---------------------~~vf 273 (784)
+.++||+||||||||++|+++|..++.+++.++|. ++.+.+.+.....+ +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 56899999999999999999999999999998874 33333322111110 0112
Q ss_pred HHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc--------------ccCCcEEEEEEcCCCC-----
Q 042193 274 EEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL--------------KSRAHVVVMGATNRPN----- 334 (784)
Q Consensus 274 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~--------------~~~~~vivI~atn~~~----- 334 (784)
. +.. .+.++++||++.+.+ .+.+.|+..++.- ..+..+.+|+|+|+..
T Consensus 101 ~-A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred H-HHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2 222 346999999997642 2345566666431 1224667899999753
Q ss_pred CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 335 SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 335 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
.+++++.+ || ..+.++.|+.+.-.+|++.+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 55888887 87 568999999999999998764
No 241
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=2.7e-09 Score=123.31 Aligned_cols=184 Identities=19% Similarity=0.294 Sum_probs=123.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE---Eech
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL---INGP 255 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~---v~~~ 255 (784)
..+.+.+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 4677889999999999999998877541 124568999999999999999999988653110 0011
Q ss_pred hh---hhh------hcc---hhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 042193 256 EI---MSK------LAG---ESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK 319 (784)
Q Consensus 256 ~l---~~~------~~g---~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 319 (784)
.. ... ..+ .....++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+..
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP- 145 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP- 145 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC-
Confidence 00 000 000 123346666665543 3456999999998742 2356677777753
Q ss_pred cCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 320 SRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 320 ~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
...+++|.+|+.++.+.+.+++ |+. .+.+..++.++...+++..+....+. ++..+..++..+.|-.
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 3466777778888899988887 663 68999999998888887765443332 2233667777777643
No 242
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.2e-09 Score=124.68 Aligned_cols=188 Identities=16% Similarity=0.254 Sum_probs=123.6
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|++..++.+..++... ..+..+||+||+|+||||+|+.+|+.+++.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567788999999999999988877541 123468999999999999999999998652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.. ...-..++.++..+.. ....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~na 138 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNA 138 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHH
Confidence 11122110 1123346666665532 2346999999987742 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+.+|.+|+.+..+.+.+++ |. ..++|..++.++-...+...+....+. ++..+..++..+.|-
T Consensus 139 LLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs 213 (527)
T PRK14969 139 MLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS 213 (527)
T ss_pred HHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777653 3456677777778888877766 44 447888998888877777655433322 233466777776664
Q ss_pred cHHHHHHHHHHH
Q 042193 390 VGADLAALCTEA 401 (784)
Q Consensus 390 ~~~dl~~l~~~a 401 (784)
..+...++..+
T Consensus 214 -lr~al~lldqa 224 (527)
T PRK14969 214 -MRDALSLLDQA 224 (527)
T ss_pred -HHHHHHHHHHH
Confidence 34455555444
No 243
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=3e-09 Score=123.28 Aligned_cols=185 Identities=21% Similarity=0.314 Sum_probs=129.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 520 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------------- 520 (784)
..+|+++.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 35789999999999998877652 134566999999999999999999997642
Q ss_pred ----------cEEEEecccchhcccCcchHHHHHHHHHhhhC----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHH
Q 042193 521 ----------NFVSVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQ 586 (784)
Q Consensus 521 ----------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 586 (784)
+++.+++.+. .+...++.+...+... ...|++|||+|.+. ....+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHH
Confidence 2333333211 1234566666555332 34699999999873 235688
Q ss_pred HHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCC
Q 042193 587 LLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGF 665 (784)
Q Consensus 587 ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~ 665 (784)
|+..|+.... ..++|.+|+.+..|-+++++ |+ .++.|.+++.++....++..+++.++.-+. .+..|++.+.|
T Consensus 141 LLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999986433 34455555566778888877 77 468999999999999998888777765333 37778887765
Q ss_pred CHHHHHHHHHHHH
Q 042193 666 SGADITEICQRAC 678 (784)
Q Consensus 666 sg~di~~l~~~a~ 678 (784)
+.+++.+++...+
T Consensus 215 dlr~al~~Lekl~ 227 (614)
T PRK14971 215 GMRDALSIFDQVV 227 (614)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666655544
No 244
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=3.4e-09 Score=116.98 Aligned_cols=176 Identities=21% Similarity=0.285 Sum_probs=118.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE---------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF--------- 249 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------- 249 (784)
+++.+.+|+++.|++..++.+++.+... ..+.++|||||||+|||++++++++.+....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 5678889999999999999888877541 2346899999999999999999999875421
Q ss_pred ---EEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 042193 250 ---FLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA 322 (784)
Q Consensus 250 ---~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 322 (784)
+.+++. .......++.+++.+.. ..+.++++||++.+.. ...+.|+..++.. ..
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~ 137 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PA 137 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CC
Confidence 112111 11123456666665432 2356999999987742 1245566666542 23
Q ss_pred cEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCC
Q 042193 323 HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHG 388 (784)
Q Consensus 323 ~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g 388 (784)
..++|.+++.+..+.+++++ |. ..+++..|+.++...++...+....+ .++..+..++..+.|
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 44555566677788888876 44 34789999998888888766654443 233446677776654
No 245
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.11 E-value=1.4e-09 Score=121.45 Aligned_cols=156 Identities=18% Similarity=0.342 Sum_probs=100.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 297 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 297 (784)
.++++||||+|+|||+|++++++.+ +..++++++.++...........-...|.... ..+++|+|||++.+..+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999976 56778888776654433222111112233332 3467999999999864321
Q ss_pred CCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC---CCCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHcCCC
Q 042193 298 KTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTKNMK 372 (784)
Q Consensus 298 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~---~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~~ 372 (784)
....+...++.+......++++++..|. .+++.+++ ||. ..+.+..|+.+.|..||+..+....
T Consensus 220 ---------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 220 ---------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred ---------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 1223444444333334556666655554 45677777 774 6788999999999999998776544
Q ss_pred cc-cchhhhHHHHhcCC
Q 042193 373 LA-EDVDLERVARDTHG 388 (784)
Q Consensus 373 ~~-~~~~l~~la~~t~g 388 (784)
+. ++.-++.++....+
T Consensus 289 ~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 289 IRIEETALDFLIEALSS 305 (445)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 32 22335667776654
No 246
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.11 E-value=2.6e-09 Score=117.50 Aligned_cols=176 Identities=22% Similarity=0.340 Sum_probs=119.9
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+..|+++.|.++.++.+.+.+... ..+..+||+||||+|||++++.+++.+...
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567788999999999999998877531 234578999999999999999999987432
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+ ......++.+++.+.. ....++++||+|.+.. ...+.
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~ 136 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNA 136 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHH
Confidence 23333221 1123345666666543 2335999999987742 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHG 388 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 388 (784)
|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..++++.|+..+...+++..++...+. ++..+..++..+.|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777653 2356666677888878888877 55 468999999999999998776554332 22345666666655
No 247
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2.9e-09 Score=122.58 Aligned_cols=188 Identities=21% Similarity=0.316 Sum_probs=127.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
..+.+.+|+++.|.+..++.++..+... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4567788999999999999998877541 234568999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.. ...-..++.+...+. .....|++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 22232211 122344666665543 23457999999998842 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+++|.+|+.++.+.+.+++ |.. .++|..|+..+-..+++..+....+. ++..+..++..+.|
T Consensus 139 LLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77777653 3456666677788899998876 553 47889999988888888766544432 23346677777766
Q ss_pred cHHHHHHHHHHH
Q 042193 390 VGADLAALCTEA 401 (784)
Q Consensus 390 ~~~dl~~l~~~a 401 (784)
..++...++..+
T Consensus 213 ~~R~al~~Ldq~ 224 (559)
T PRK05563 213 GMRDALSILDQA 224 (559)
T ss_pred CHHHHHHHHHHH
Confidence 444554444443
No 248
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.11 E-value=2.2e-09 Score=125.92 Aligned_cols=183 Identities=23% Similarity=0.354 Sum_probs=117.7
Q ss_pred hhcCCCCcccccChHHHHH---HHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 042193 179 ERLNEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP 255 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~---~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~ 255 (784)
+++.+-+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++.++..++.+++.
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 4566778999999998875 34554432 1234799999999999999999999999888888764
Q ss_pred hhhhhhcchhHHHHHHHHHHHH-----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc
Q 042193 256 EIMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT 330 (784)
Q Consensus 256 ~l~~~~~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at 330 (784)
... ...++.++..+. .....++||||+|.+... ..+.|+..++ ...+++|++|
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEec
Confidence 311 112233333321 134569999999987422 1234454443 3467777766
Q ss_pred CC--CCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC---------CCcccchhhhHHHHhcCCCcHHHHHHHHH
Q 042193 331 NR--PNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN---------MKLAEDVDLERVARDTHGYVGADLAALCT 399 (784)
Q Consensus 331 n~--~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~---------~~~~~~~~l~~la~~t~g~~~~dl~~l~~ 399 (784)
+. ...+++++.+ |. ..+.++.++.++...+++..+.. ..+. +..+..++....|- .+.+..++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~-deaL~~La~~s~GD-~R~lln~Le 219 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE-PEAEKHLVDVANGD-ARSLLNALE 219 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC-HHHHHHHHHhCCCC-HHHHHHHHH
Confidence 43 2457888876 43 34889999999999999876651 2222 33367777776553 334444444
Q ss_pred HH
Q 042193 400 EA 401 (784)
Q Consensus 400 ~a 401 (784)
.+
T Consensus 220 ~a 221 (725)
T PRK13341 220 LA 221 (725)
T ss_pred HH
Confidence 43
No 249
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.10 E-value=6.8e-09 Score=106.55 Aligned_cols=170 Identities=15% Similarity=0.291 Sum_probs=104.2
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhH
Q 042193 190 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE 266 (784)
Q Consensus 190 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~ 266 (784)
++....+..++++.. +.....+++|+||+|||||+|++++++.+ +..++.+++.++...
T Consensus 23 ~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------ 84 (227)
T PRK08903 23 GENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------ 84 (227)
T ss_pred CCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------
Confidence 345555566665543 12345689999999999999999999875 556788887665321
Q ss_pred HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcE-EEEEEcCCCC--CCCHHHHhc
Q 042193 267 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHV-VVMGATNRPN--SIDPALRRF 343 (784)
Q Consensus 267 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-ivI~atn~~~--~ld~al~r~ 343 (784)
+. ......+++|||++.+... ....|...++........ ++++++..+. .+.+.+.+
T Consensus 85 ------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s- 144 (227)
T PRK08903 85 ------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT- 144 (227)
T ss_pred ------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH-
Confidence 11 1224569999999987421 123455555554444443 4444433332 24566665
Q ss_pred CCc--ceEEEeCCCCHHHHHHHHHHHHcCC--CcccchhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 344 GRF--DREIDIGVPDEVGRLEVFRIHTKNM--KLAEDVDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 344 ~rf--~~~i~i~~p~~~~R~~il~~~~~~~--~~~~~~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
|| ...+.+++|+...+..+++...... .+..+ -++.++....| +...+..+++.
T Consensus 145 -r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 145 -RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred -HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHH
Confidence 44 4678999999998888888765443 33332 36666664443 33445455544
No 250
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=5.1e-09 Score=118.24 Aligned_cols=194 Identities=21% Similarity=0.264 Sum_probs=122.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE--------E
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF--------F 250 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------~ 250 (784)
..+.+..|+++.|++..++.++..+... ..+..+||+||+|+||||+|+.+|+.+++.- .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 3567778999999999999988877541 1234689999999999999999999886310 0
Q ss_pred EEechhhhhh----------hcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 251 LINGPEIMSK----------LAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 251 ~v~~~~l~~~----------~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
..+|..+... .....-..++.+.+.+. ...+.+++|||+|.+.. ...+.|+..++
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LE 144 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLE 144 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 0111111110 00011223444444432 23457999999997742 13456777776
Q ss_pred ccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHH
Q 042193 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLA 395 (784)
Q Consensus 317 ~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~ 395 (784)
.. ...+++|.+|+.++.+.+++++ |+. .+.+..++..+...++...++...+. ++..+..++..+.|- .+++.
T Consensus 145 ep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al 218 (486)
T PRK14953 145 EP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAA 218 (486)
T ss_pred cC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 53 2345555566777788888876 553 58899999999998988877654433 223356677766653 33444
Q ss_pred HHHHHH
Q 042193 396 ALCTEA 401 (784)
Q Consensus 396 ~l~~~a 401 (784)
.++..+
T Consensus 219 ~~Ldkl 224 (486)
T PRK14953 219 SLLDQA 224 (486)
T ss_pred HHHHHH
Confidence 444333
No 251
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.07 E-value=1.4e-09 Score=116.49 Aligned_cols=161 Identities=23% Similarity=0.360 Sum_probs=105.2
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-------CcEEEE-e
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFVSV-K 526 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-------~~~i~v-~ 526 (784)
+...|.+|.|++++|..|.-....| ...|+||.|++|||||+++++++..+. .+|... +
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4567899999999999987665543 125799999999999999999988753 122200 0
Q ss_pred cccch-----h---------------cc----cCcchHH------HHHHHHHhh---------hCCCeEEEEeccchhhh
Q 042193 527 GPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 567 (784)
Q Consensus 527 ~~~l~-----~---------------~~----~g~~~~~------i~~~f~~a~---------~~~p~vl~iDEid~l~~ 567 (784)
.++.. . .+ .|.++.. +...|.... ...-.+||+|||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 00100 0 00 1112221 111121111 1112499999999864
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCC-CCCccccCCCCcccccccCCCC-HH
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-VIDPALLRPGRLDQLIYIPLPD-EA 634 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~-~~ 634 (784)
..+++.|+..|+... ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 158 -------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 -------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred -------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 346677777775411 134688888888665 68999999 999999999997 69
Q ss_pred HHHHHHHHHh
Q 042193 635 SRLQIFKACL 644 (784)
Q Consensus 635 ~r~~il~~~~ 644 (784)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 252
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.06 E-value=1.2e-09 Score=117.17 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=100.1
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-------CcEE-------
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFV------- 523 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-------~~~i------- 523 (784)
.|..|.|++++|..|.-....| ...+++|.|+||+||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3677899999998875544332 134699999999999999999998762 2111
Q ss_pred ------EE--ec-------------ccchh-----cccCcc--hHHH--------HHHHHHhhhCCCeEEEEeccchhhh
Q 042193 524 ------SV--KG-------------PELLT-----MWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 524 ------~v--~~-------------~~l~~-----~~~g~~--~~~i--------~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
.. .. .++-. ..+|.. ++.+ .-++..|. ..++|+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 00 00 01100 112211 0000 00122222 2499999999863
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCC-CCCccccCCCCcccccccCCCCH-H
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-VIDPALLRPGRLDQLIYIPLPDE-A 634 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~ 634 (784)
..+++.|+..|+... ...++++|+++|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 456777888776421 124688888888655 68899999 9999999998865 8
Q ss_pred HHHHHHHHHh
Q 042193 635 SRLQIFKACL 644 (784)
Q Consensus 635 ~r~~il~~~~ 644 (784)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 8999998743
No 253
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=9.2e-09 Score=115.45 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=118.5
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+.+|++|.|++..++.++..+... ..+..+||+||||+|||++|+++|+.+.+.
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 5677889999999999999888877541 224569999999999999999999987532
Q ss_pred ---------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHH
Q 042193 249 ---------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVS 309 (784)
Q Consensus 249 ---------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 309 (784)
++.+++... . .-..++.+.+.. ......+++|||+|.+.. ...+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n 139 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFN 139 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHH
Confidence 222332111 0 012233332222 224567999999998842 1345
Q ss_pred HHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCC
Q 042193 310 QLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHG 388 (784)
Q Consensus 310 ~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g 388 (784)
.|+..++.. ...+++|.+|+.+..+.+.+++ |. ..+++..++.++-..++...++...+ .++..+..++..+.|
T Consensus 140 ~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 677777763 2356666677888888888887 55 35899999998888888766544332 233346777777765
No 254
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6e-10 Score=113.12 Aligned_cols=131 Identities=24% Similarity=0.392 Sum_probs=92.2
Q ss_pred cccchhhhhhhhccccccccCChhhhhhc----ccCC-CceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-hcc
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKF----GLSP-SKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-TMW 534 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~----~~~~-~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-~~~ 534 (784)
-+.|++..|+.|.-++.. |...+... .+.. ..++||.||+|||||.||+.||..++.||-.-++..|. ..|
T Consensus 62 YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred heecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 377888888888765532 21122111 1222 24599999999999999999999999999998888775 578
Q ss_pred cCcchHH-HHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCC
Q 042193 535 FGESEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGM 594 (784)
Q Consensus 535 ~g~~~~~-i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 594 (784)
+|+--.+ +-.+.+.|. +....|++|||||.++.+-...+-..+-..+-+++.||..++|.
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 9987444 556666653 22245999999999987643333322334567899999999985
No 255
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=6.4e-09 Score=119.22 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=124.9
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
.++.+-.|++|.|++..++.++..+... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 4677888999999999999998877531 124569999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~na 138 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNA 138 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHH
Confidence 12222111 01123344444332 234557999999998842 23456
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++. ....+++|.+|+.+..+.+++++ |.. .+++..++.++...+++..+....+. ++..+..++..+.|
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 7777764 33467777777778888888887 654 47899999998888888766443322 23346677777776
Q ss_pred cHHHHHHHHHH
Q 042193 390 VGADLAALCTE 400 (784)
Q Consensus 390 ~~~dl~~l~~~ 400 (784)
..+++..++..
T Consensus 213 dlR~alslLdk 223 (563)
T PRK06647 213 SVRDAYTLFDQ 223 (563)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 256
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=4.6e-09 Score=121.44 Aligned_cols=185 Identities=20% Similarity=0.299 Sum_probs=123.2
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+-+|++|.|++..++.|+..+... ..+..+||+||+|+||||+|+++++.+++.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 4677889999999999999998877541 224568999999999999999999998642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+ ...-..++.+.+.+.. ....|++|||+|.+.. ...+.
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~na 138 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNA 138 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHH
Confidence 22233221 1112345555554432 2346999999998852 23467
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..|+.. ...+++|.+|+.++.+.+.+++ |. ..++|..++..+-...+...++...+. ++..+..++..+.|-
T Consensus 139 LLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 139 LLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 78888753 3467777778888899888876 44 346788888877777776655443322 233467777777763
Q ss_pred cHHHHHHHH
Q 042193 390 VGADLAALC 398 (784)
Q Consensus 390 ~~~dl~~l~ 398 (784)
. .+...++
T Consensus 214 l-r~al~~L 221 (576)
T PRK14965 214 M-RDSLSTL 221 (576)
T ss_pred H-HHHHHHH
Confidence 3 3333333
No 257
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=1.8e-09 Score=120.59 Aligned_cols=171 Identities=25% Similarity=0.334 Sum_probs=112.8
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhh
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 567 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~ 567 (784)
++.+-+||+||||.||||||+.+|+.+|..++.|++++-.+. ......|..+.++-. ...|.++++||||--
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-- 399 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-- 399 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC--
Confidence 344458999999999999999999999999999999884321 111222333332221 256899999999842
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhC-------CCCC------------CcEEEEEecCCCCCCCccccCCCCccccccc
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDG-------MNAK------------KTVFIIGATNRPDVIDPALLRPGRLDQLIYI 628 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~-------~~~~------------~~v~vi~aTn~~~~ld~allr~gRf~~~i~~ 628 (784)
....++.++..+.. -... -.--|||.+|. ..-|||.----|-.+|+|
T Consensus 400 ------------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 400 ------------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAF 465 (877)
T ss_pred ------------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEe
Confidence 23344555555441 1110 12358888885 446776421147889999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 042193 629 PLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEICQRACKYAIRE 684 (784)
Q Consensus 629 ~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 684 (784)
++|......+=|+..+...++.-+. -+..|++++++ ||++.++.....|.+.
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 9999888888888877776665221 25555555554 9999998888877654
No 258
>PRK08727 hypothetical protein; Validated
Probab=99.04 E-value=9.5e-09 Score=105.62 Aligned_cols=147 Identities=26% Similarity=0.379 Sum_probs=94.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 297 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 297 (784)
...++|+||+|||||+|+++++..+ +....+++..+.. ..+..+++.. ....+|+|||++.+..+..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH
Confidence 3569999999999999999998765 4445566544432 2233344433 2346999999998864431
Q ss_pred CCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC---CHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHHHc--C
Q 042193 298 KTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVFRIHTK--N 370 (784)
Q Consensus 298 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~--~ 370 (784)
. ...+..+++....+..-+++.+...|..+ ++.+++ || ...+.++.|+.+++.++++.++. +
T Consensus 111 ~---------~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 D---------EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred H---------HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 12344445444333333444455566655 688887 64 55689999999999999997654 3
Q ss_pred CCcccchhhhHHHHhcCCC
Q 042193 371 MKLAEDVDLERVARDTHGY 389 (784)
Q Consensus 371 ~~~~~~~~l~~la~~t~g~ 389 (784)
+.+.. ..+..++..+.|-
T Consensus 180 l~l~~-e~~~~La~~~~rd 197 (233)
T PRK08727 180 LALDE-AAIDWLLTHGERE 197 (233)
T ss_pred CCCCH-HHHHHHHHhCCCC
Confidence 33433 3467788877643
No 259
>PHA02244 ATPase-like protein
Probab=99.04 E-value=3e-09 Score=113.18 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=82.1
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh---cccCcchH-HHHHHHHHhhhCCCeEEEEeccchhhhhc
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT---MWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQR 569 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~---~~~g~~~~-~i~~~f~~a~~~~p~vl~iDEid~l~~~r 569 (784)
...++|+||||||||++|+++|..++.+|+.++.-.-.. .++..... .-..+++..+ ...+++||||+.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcCCH--
Confidence 445999999999999999999999999999987421000 11111111 1112333222 346999999997533
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCC---------CCCCcEEEEEecCCC-----------CCCCccccCCCCcccccccC
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGM---------NAKKTVFIIGATNRP-----------DVIDPALLRPGRLDQLIYIP 629 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~---------~~~~~v~vi~aTn~~-----------~~ld~allr~gRf~~~i~~~ 629 (784)
.++..|...++.. ....+.-+|+|+|.+ ..+++|++. ||- .|+|+
T Consensus 195 ------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 195 ------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred ------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 2334444444321 123578899999974 567999999 995 79999
Q ss_pred CCCHHHHHHHH
Q 042193 630 LPDEASRLQIF 640 (784)
Q Consensus 630 ~p~~~~r~~il 640 (784)
.|+..+ ..|.
T Consensus 260 yp~~~E-~~i~ 269 (383)
T PHA02244 260 YDEKIE-HLIS 269 (383)
T ss_pred CCcHHH-HHHh
Confidence 998433 3444
No 260
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.03 E-value=9.8e-09 Score=111.17 Aligned_cols=176 Identities=22% Similarity=0.280 Sum_probs=113.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA-----FFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~~~v~ 253 (784)
+.+.+..++++.|.+++++.++.++... ...+++|+||||||||++++++++++.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3566778899999999999988877431 1236899999999999999999998732 234444
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHh------cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 254 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
+.+... ...++..+..... ..+.++++||++.+... ....|...++..... ..+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 332111 1112222222111 23469999999877421 234566666654443 3344
Q ss_pred EEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCC
Q 042193 328 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGY 389 (784)
Q Consensus 328 ~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 389 (784)
.+++.+..+.+.+++ |+. .+++..++.++...+++..+....+ .++..+..++..+.|.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 456666667666766 554 4799999999998888877755443 2334577787777664
No 261
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.02 E-value=1.9e-08 Score=117.09 Aligned_cols=166 Identities=27% Similarity=0.463 Sum_probs=105.0
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcE
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFF 249 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~ 249 (784)
.+.+-+|+++.|.+..+..+.+.+.. ..+.+++|+|||||||||+|+++.+.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 44566889999999998887655432 124579999999999999999998765 2457
Q ss_pred EEEechhhh-------hhhcchhHH----HHHHHHHH----------HHhcCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 250 FLINGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 250 ~~v~~~~l~-------~~~~g~~~~----~l~~vf~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
+.++|..+. ....+.... ..+..+.. .......+||+||++.+.+. ..
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HH
Confidence 888886542 111111100 01111110 01123469999998877422 22
Q ss_pred HHHHHHhhcc--------------------------ccCCcEEEEEE-cCCCCCCCHHHHhcCCcceEEEeCCCCHHHHH
Q 042193 309 SQLLTLMDGL--------------------------KSRAHVVVMGA-TNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 361 (784)
Q Consensus 309 ~~Ll~~ld~~--------------------------~~~~~vivI~a-tn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~ 361 (784)
..|+..++.- .....++++++ |+.+..+++++++ |+. .+.++.++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3333333211 01234566654 5568889999987 775 5788999999999
Q ss_pred HHHHHHHcCCC
Q 042193 362 EVFRIHTKNMK 372 (784)
Q Consensus 362 ~il~~~~~~~~ 372 (784)
+|++..+....
T Consensus 360 ~Il~~~a~~~~ 370 (615)
T TIGR02903 360 LIVLNAAEKIN 370 (615)
T ss_pred HHHHHHHHHcC
Confidence 99998776543
No 262
>PRK05642 DNA replication initiation factor; Validated
Probab=99.02 E-value=9.8e-09 Score=105.51 Aligned_cols=146 Identities=16% Similarity=0.292 Sum_probs=99.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 297 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 297 (784)
..+++|+||+|||||+|++++++++ +...++++..++.... ..+.+.... ..+++|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3679999999999999999999764 4567888877765421 122222222 2589999999885442
Q ss_pred CCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC---CHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHHHcCC-
Q 042193 298 KTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVFRIHTKNM- 371 (784)
Q Consensus 298 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~~~- 371 (784)
.....|..+++........++++++..|..+ .+.+++ || ...+.+..|+.+.+..+++..+...
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1224566677666666677888777766543 577877 65 4567789999999999998555433
Q ss_pred -CcccchhhhHHHHhcCC
Q 042193 372 -KLAEDVDLERVARDTHG 388 (784)
Q Consensus 372 -~~~~~~~l~~la~~t~g 388 (784)
.+.+ .-++.++....+
T Consensus 184 ~~l~~-ev~~~L~~~~~~ 200 (234)
T PRK05642 184 LHLTD-EVGHFILTRGTR 200 (234)
T ss_pred CCCCH-HHHHHHHHhcCC
Confidence 3333 336666666655
No 263
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.02 E-value=2e-09 Score=107.02 Aligned_cols=143 Identities=24% Similarity=0.309 Sum_probs=97.5
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCCc------------------------EEEEecccchhcccCcchHHHHHHHHH
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FVSVKGPELLTMWFGESEANVREIFDK 548 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~------------------------~i~v~~~~l~~~~~g~~~~~i~~~f~~ 548 (784)
.+..+||+||+|+|||++|+.++..+... +..+.... . .-....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45669999999999999999999986321 12211110 0 0122456555655
Q ss_pred hhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCccc
Q 042193 549 ARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQ 624 (784)
Q Consensus 549 a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 624 (784)
+.. ....|+||||+|.+.. ..++.||..|+... ...++|.+||.++.|.+++.+ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-E
Confidence 543 3457999999998743 34677888888633 344555566677899999987 77 4
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCC
Q 042193 625 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 664 (784)
Q Consensus 625 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 664 (784)
++.|++|+.++..++++.. ++++ ..+..+++.+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 8999999999988888776 3432 346677776665
No 264
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.8e-08 Score=109.55 Aligned_cols=163 Identities=22% Similarity=0.378 Sum_probs=111.2
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-----EEEEechhhhhhh-
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIMSKL- 261 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~-----~~~v~~~~l~~~~- 261 (784)
.+.+-+.+++++...+.-.+.. ..|.+++++|+||||||++++.+++++... +++|||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 4778889999888775433322 345579999999999999999999988543 7999995443211
Q ss_pred --------------cchhH-HHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEE
Q 042193 262 --------------AGESE-SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVV 325 (784)
Q Consensus 262 --------------~g~~~-~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vi 325 (784)
.|... ..+..+++.... ....|+++||+|.|..+.+ .++-.|..+.+.. ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 11111 222333333333 3456889999999987754 3444555544443 56788
Q ss_pred EEEEcCCCC---CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 326 VMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 326 vI~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
+|+.+|..+ .+++.+.+.-.. .+|.|++.+.++-..|++...+.
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHh
Confidence 999998764 668888763222 34899999999999999977653
No 265
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=1.3e-08 Score=114.99 Aligned_cols=189 Identities=17% Similarity=0.213 Sum_probs=125.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+.+|+++.|++..++.++..+... ..+..+||+||+|+|||++|+++++.+.+.
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4677889999999999999998877531 234567999999999999999999987421
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.+ ...-..++.+.+... .....|++|||+|.+.. ...+.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NA 136 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNA 136 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 22222211 001234555554422 12336999999987742 24566
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++... ..+.+|.+|+.+..+.+.+++ |. ..+++..++.++-...++..+....+. ++..+..++..+.|
T Consensus 137 LLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 137 LLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777887653 345555566778889999987 64 468899999888888877665543322 33446777777776
Q ss_pred cHHHHHHHHHHHH
Q 042193 390 VGADLAALCTEAA 402 (784)
Q Consensus 390 ~~~dl~~l~~~a~ 402 (784)
..+++..++..+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4455555555443
No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=5.6e-09 Score=113.06 Aligned_cols=190 Identities=18% Similarity=0.159 Sum_probs=121.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC-------cEEEE---
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFVSV--- 525 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------~~i~v--- 525 (784)
...++++.|.+.+++.|...+.. -..+..+||+||+|+|||++|+.+|+.+.. +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 34578899999999998877653 134557999999999999999999998643 11000
Q ss_pred -e-----------cccch---hcc-c--C-----cchHHHHHHHHH----hhhCCCeEEEEeccchhhhhcCCCCCCCCC
Q 042193 526 -K-----------GPELL---TMW-F--G-----ESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGASVGDAGG 578 (784)
Q Consensus 526 -~-----------~~~l~---~~~-~--g-----~~~~~i~~~f~~----a~~~~p~vl~iDEid~l~~~r~~~~~~~~~ 578 (784)
. .+++. ..+ . + -+-..++.+-+. +......|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 0 01111 000 0 0 011234443332 2334567999999998743
Q ss_pred chHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHH
Q 042193 579 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 658 (784)
Q Consensus 579 ~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 658 (784)
...+.||..|+.... +.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++......+++ +..+..+
T Consensus 156 ---~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 156 ---NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred ---HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 345788999986433 34444456778888888876 88 599999999999999998744322222 2236677
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 042193 659 ARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 659 a~~~~g~sg~di~~l~~~a~ 678 (784)
++.+.| +.+...+++....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 777776 4444444554444
No 267
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.02 E-value=1.7e-08 Score=119.38 Aligned_cols=130 Identities=20% Similarity=0.260 Sum_probs=85.8
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc------hhcccCcc----hHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL------LTMWFGES----EANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l------~~~~~g~~----~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
.+|+-||+.+|||++...+|.+.|..|++++..+- ++.|+-.. .-+-+-+....|+. .-|++||+.-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELNL- 966 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELNL- 966 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeecccc-
Confidence 49999999999999999999999999999986543 34444222 11222333333433 3899999863
Q ss_pred hhhcCCCCCCCCCchHHHHHHHHHHhhCCC------------CCCcEEEEEecCCCC------CCCccccCCCCcccccc
Q 042193 566 ATQRGASVGDAGGAADRVLNQLLTEMDGMN------------AKKTVFIIGATNRPD------VIDPALLRPGRLDQLIY 627 (784)
Q Consensus 566 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------------~~~~v~vi~aTn~~~------~ld~allr~gRf~~~i~ 627 (784)
++ ..++..|=+.+|... +..+..++||-|.|. -|..|+.. ||- .++
T Consensus 967 Ap-------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~h 1030 (4600)
T COG5271 967 AP-------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMH 1030 (4600)
T ss_pred Cc-------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhh
Confidence 22 334555544555421 345678888889884 46778887 884 556
Q ss_pred cCCCCHHHHHHHHHHHh
Q 042193 628 IPLPDEASRLQIFKACL 644 (784)
Q Consensus 628 ~~~p~~~~r~~il~~~~ 644 (784)
|.--..++...||+..+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 65555666677776544
No 268
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=1.1e-09 Score=102.46 Aligned_cols=126 Identities=33% Similarity=0.477 Sum_probs=82.3
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCc---EEEEecccchhc--------------ccCcchHHHHHHHHHhhhCCCeEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQAN---FVSVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 557 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~---~i~v~~~~l~~~--------------~~g~~~~~i~~~f~~a~~~~p~vl 557 (784)
..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 468999999999999999999998764 788877654322 123445677788999998888999
Q ss_pred EEeccchhhhhcCCCCCCCCCchHHHHHHH--HHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCC
Q 042193 558 FFDELDSIATQRGASVGDAGGAADRVLNQL--LTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLP 631 (784)
Q Consensus 558 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~l--l~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 631 (784)
|+||++.+..... ....... ..............+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999998765311 1110000 00111112344567888888733334444443 88888877654
No 269
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.01 E-value=6.9e-10 Score=104.59 Aligned_cols=109 Identities=28% Similarity=0.411 Sum_probs=72.8
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch------hccc---CcchHHHHHHHHHhhhCCCeEEEEeccchhh
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL------TMWF---GESEANVREIFDKARQSAPCVLFFDELDSIA 566 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~------~~~~---g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~ 566 (784)
+|+|+||||||||++++.+|..++.+++.+.+.... ..|. +..+..-..+.+..+ .++++|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 489999999999999999999999999888776532 2221 111000000111111 4579999999873
Q ss_pred hhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCC------cEEEEEecCCCC----CCCccccCCCCc
Q 042193 567 TQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKK------TVFIIGATNRPD----VIDPALLRPGRL 622 (784)
Q Consensus 567 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~------~v~vi~aTn~~~----~ld~allr~gRf 622 (784)
...+++.|+..++.-. ... +..+|+|+|..+ .+++|+++ ||
T Consensus 78 -------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2567777888777531 011 389999999998 89999999 87
No 270
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=118.82 Aligned_cols=132 Identities=29% Similarity=0.424 Sum_probs=91.8
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh--cccCcchHH------------HHHHHHHhhhCCCeEEE
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT--MWFGESEAN------------VREIFDKARQSAPCVLF 558 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~--~~~g~~~~~------------i~~~f~~a~~~~p~vl~ 558 (784)
..+++||.||||||||++|+.+|..++.+|+.+.+..-+. ..+|...-. -+.+|...+ ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3456999999999999999999999999999998764321 112221111 112232222 4999
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC----------CCCCCcEEEEEecCC-----CCCCCccccCCCCcc
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG----------MNAKKTVFIIGATNR-----PDVIDPALLRPGRLD 623 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~----------~~~~~~v~vi~aTn~-----~~~ld~allr~gRf~ 623 (784)
+|||+.. ...+++.||..|+. ..-....+||+|+|. -..|.+|+++ ||.
T Consensus 118 ~DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 118 LDEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EeccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 9999873 35678888888875 222356888888893 3567899999 999
Q ss_pred cccccCCC-CHHHHHHHHHHHh
Q 042193 624 QLIYIPLP-DEASRLQIFKACL 644 (784)
Q Consensus 624 ~~i~~~~p-~~~~r~~il~~~~ 644 (784)
..+++++| +..+...++....
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEecCCCCchHHHHHHHHhCc
Confidence 89999999 4444444444433
No 271
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.00 E-value=2.1e-09 Score=113.26 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=94.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh--hcchhHHH----------HHHHHHHHHhcCCeEEEee
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFID 287 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~--~~g~~~~~----------l~~vf~~a~~~~p~il~iD 287 (784)
.+++|||.||||||||++++.+|..++.+++.|++...... ..|..... ....+..|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 35789999999999999999999999999999988654332 22321100 011222333 346789999
Q ss_pred hhhhhcCCCCCCchHHHHHHHHHHHHHhh------------ccccCCcEEEEEEcCCCC------------CCCHHHHhc
Q 042193 288 EIDSIAPKREKTNGEVERRIVSQLLTLMD------------GLKSRAHVVVMGATNRPN------------SIDPALRRF 343 (784)
Q Consensus 288 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld------------~~~~~~~vivI~atn~~~------------~ld~al~r~ 343 (784)
|++..-+. +...|..+++ .+..++.+.||+|+|+.+ .+++++..
T Consensus 142 Ein~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99977433 2233333333 122445788999999864 34777776
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 344 GRFDREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 344 ~rf~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
||...+.+..|+.+.-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999866433
No 272
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=8.3e-09 Score=114.58 Aligned_cols=183 Identities=15% Similarity=0.212 Sum_probs=113.3
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL------- 251 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~------- 251 (784)
+++.+..|++|.|++..++.|+.++... ..+..+||+||||+||||+|+++|+.+.+....
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 5677888999999999999888777531 224569999999999999999999998652100
Q ss_pred ---Ee------chhhhh-------hhcc---hhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 252 ---IN------GPEIMS-------KLAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 252 ---v~------~~~l~~-------~~~g---~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
-. |..+.. ...+ ..-..++.+.+.+. .....++||||+|.+... ..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-----------~~ 144 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-----------AF 144 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------HH
Confidence 00 000000 0001 11234555444442 223469999999988521 23
Q ss_pred HHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcC
Q 042193 309 SQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTH 387 (784)
Q Consensus 309 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~ 387 (784)
+.|+..++... ...++|.+|+.+..+-+.+++ |.. .+++..++..+-...++..++.... .++..+..++..+.
T Consensus 145 ~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 145 NAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 45666666432 344555555666777777775 442 4778888888777777765543332 22334667777776
Q ss_pred CC
Q 042193 388 GY 389 (784)
Q Consensus 388 g~ 389 (784)
|.
T Consensus 220 g~ 221 (397)
T PRK14955 220 GS 221 (397)
T ss_pred CC
Confidence 63
No 273
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.99 E-value=9.5e-09 Score=115.32 Aligned_cols=168 Identities=15% Similarity=0.246 Sum_probs=108.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHH---HHHHHHHHHHhcCCeEEEeehhhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESES---NLRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~---~l~~vf~~a~~~~p~il~iDEid~l 292 (784)
.++++|+|++|+|||+|++++++.+ +..++++++.++...+...... .+....+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999865 3567889888877655433222 121111111 34679999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC---CCHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHH
Q 042193 293 APKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS---IDPALRRFGRF--DREIDIGVPDEVGRLEVFRIH 367 (784)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~---ld~al~r~~rf--~~~i~i~~p~~~~R~~il~~~ 367 (784)
..+. .....|..+++.+......+|+++...|.. +++.+++ || ...+.+..|+.++|.+|++..
T Consensus 219 ~~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 219 SYKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred cCCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHH
Confidence 5432 123445555555545455556555555543 4677776 66 355679999999999999988
Q ss_pred HcCCCc---ccchhhhHHHHhcCCCcHHHHHHHHHHHH
Q 042193 368 TKNMKL---AEDVDLERVARDTHGYVGADLAALCTEAA 402 (784)
Q Consensus 368 ~~~~~~---~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 402 (784)
++...+ .++.-+..++....|- .+.+..++....
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l~ 324 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDD-VRKIKGSVSRLN 324 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 765321 2333467777777763 345555555443
No 274
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=2.2e-08 Score=115.38 Aligned_cols=194 Identities=19% Similarity=0.193 Sum_probs=126.5
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe-----
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLIN----- 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~----- 253 (784)
+++.+-+|++|.|++..++.|..++... ..+..+||+||+|+||||+|+++|+.+++.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 4677788999999999999998877531 23557999999999999999999999865321111
Q ss_pred --------chhhhhhh----------cchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHH
Q 042193 254 --------GPEIMSKL----------AGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 311 (784)
Q Consensus 254 --------~~~l~~~~----------~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 311 (784)
|..+.... ....-..++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naL 152 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNAL 152 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHH
Confidence 11111100 00112346666665532 2357999999998842 234567
Q ss_pred HHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 312 LTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 312 l~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
+..|+... ..+.+|.+|+.++.+.+.+++ |. ..+++..++.++-..+++..++...+. ++..+..++..+.|.
T Consensus 153 LKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd- 226 (598)
T PRK09111 153 LKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS- 226 (598)
T ss_pred HHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77776543 345555566777778788876 55 458899999998888888766544332 233466777777764
Q ss_pred HHHHHHHHHHH
Q 042193 391 GADLAALCTEA 401 (784)
Q Consensus 391 ~~dl~~l~~~a 401 (784)
..++..++..+
T Consensus 227 lr~al~~Ldkl 237 (598)
T PRK09111 227 VRDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 275
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=5.7e-09 Score=110.12 Aligned_cols=189 Identities=20% Similarity=0.306 Sum_probs=113.7
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCC-cEEE--Eecc-----cchh---cccCcc-----h-HHHHHHH----HHhhhCCC
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQA-NFVS--VKGP-----ELLT---MWFGES-----E-ANVREIF----DKARQSAP 554 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~-~~i~--v~~~-----~l~~---~~~g~~-----~-~~i~~~f----~~a~~~~p 554 (784)
-++|+||+|+||||+++.++..+.. .+.. +... ++.. ...|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 3889999999999999999998752 2221 1111 1110 011211 1 1112222 22335567
Q ss_pred eEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-CCCcEEEEEecCCCC---CCC-c---cccCCCCccccc
Q 042193 555 CVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNRPD---VID-P---ALLRPGRLDQLI 626 (784)
Q Consensus 555 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vi~aTn~~~---~ld-~---allr~gRf~~~i 626 (784)
.++++||++.+... .+..+ ..+-... .....+.|..+..|+ .+. + .+.+ |+...+
T Consensus 125 ~vliiDe~~~l~~~--------------~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 125 ALLVVDEAQNLTPE--------------LLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred eEEEEECcccCCHH--------------HHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 89999999986421 12222 2222111 122222222233332 222 2 2334 777888
Q ss_pred ccCCCCHHHHHHHHHHHhccCCC-----CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 042193 627 YIPLPDEASRLQIFKACLRKSPI-----SPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRE 701 (784)
Q Consensus 627 ~~~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 701 (784)
++++.+.++..+++...++..+. -.+..++.|++.+.|... .|..+|..+...|..++
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~---------------- 250 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE---------------- 250 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC----------------
Confidence 99999999999999888865432 123457888999999865 59999999888877654
Q ss_pred CCccccccCcccccHHHHHHHHhhcc
Q 042193 702 NPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 702 ~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
...|+.+++++++..++
T Consensus 251 ---------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 ---------KREIGGEEVREVIAEID 267 (269)
T ss_pred ---------CCCCCHHHHHHHHHHhh
Confidence 23699999999998764
No 276
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=9.6e-10 Score=106.83 Aligned_cols=110 Identities=26% Similarity=0.410 Sum_probs=75.1
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCC----cEEEEecccchhcccCcchHHHHHHHHHh------hhCCCeEEEEecc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFVSVKGPELLTMWFGESEANVREIFDKA------RQSAPCVLFFDEL 562 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~----~~i~v~~~~l~~~~~g~~~~~i~~~f~~a------~~~~p~vl~iDEi 562 (784)
|...++|+||+|+|||.+|+++|..+.. +++.++++++... ++.+..+..+...+ ... .|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHH
Confidence 3455999999999999999999999985 9999999988651 11122222222211 112 29999999
Q ss_pred chhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC
Q 042193 563 DSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP 609 (784)
Q Consensus 563 d~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~ 609 (784)
|...+..+ ...+-....+++.||+.|++.. +-+++++|+|+|.-
T Consensus 78 dKa~~~~~---~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 78 DKAHPSNS---GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GGCSHTTT---TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hhcccccc---ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99887511 1122234578999999998642 13578999999964
No 277
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.98 E-value=2e-08 Score=118.86 Aligned_cols=133 Identities=23% Similarity=0.337 Sum_probs=87.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh------hhhhcchhHHH---HHHHHHHHHhcCCeEEEeehhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI------MSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l------~~~~~g~~~~~---l~~vf~~a~~~~p~il~iDEid~ 291 (784)
...+||.||..||||+.+..+|.+.+..++.||..+- .+.|+...... -..++-+|.+.. -.+++||+..
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecccc
Confidence 3469999999999999999999999999999987543 22222111111 123344444443 3789999864
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhc------------cccCCcEEEEEEcCCCC------CCCHHHHhcCCcceEEEeC
Q 042193 292 IAPKREKTNGEVERRIVSQLLTLMDG------------LKSRAHVVVMGATNRPN------SIDPALRRFGRFDREIDIG 353 (784)
Q Consensus 292 l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~vivI~atn~~~------~ld~al~r~~rf~~~i~i~ 353 (784)
.+. .+++.|-.++|. +..++.+.+++|.|+|. .+..|+|. ||- +++|.
T Consensus 967 ApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFd 1032 (4600)
T COG5271 967 APT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFD 1032 (4600)
T ss_pred CcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcc
Confidence 431 255666666653 23456788889989885 45677776 774 46666
Q ss_pred CCCHHHHHHHHHHHH
Q 042193 354 VPDEVGRLEVFRIHT 368 (784)
Q Consensus 354 ~p~~~~R~~il~~~~ 368 (784)
-..+.+-..||+..+
T Consensus 1033 dipedEle~ILh~rc 1047 (4600)
T COG5271 1033 DIPEDELEEILHGRC 1047 (4600)
T ss_pred cCcHHHHHHHHhccC
Confidence 666677777776443
No 278
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=2.2e-08 Score=116.14 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=119.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLI------ 252 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v------ 252 (784)
+++.+..|+++.|++..++.|..++... ..+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4567778999999999999998887641 1234799999999999999999999986521100
Q ss_pred -ech-----------hhh--hhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHH
Q 042193 253 -NGP-----------EIM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTL 314 (784)
Q Consensus 253 -~~~-----------~l~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 314 (784)
.|. ++. .......-..++.++..+.. ....|+||||+|.+.. ...+.|+..
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~ 144 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKT 144 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHH
Confidence 010 000 00111233466777765542 2346999999998842 234667777
Q ss_pred hhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC--CcccchhhhHHHHhcCCCc
Q 042193 315 MDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM--KLAEDVDLERVARDTHGYV 390 (784)
Q Consensus 315 ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~--~~~~~~~l~~la~~t~g~~ 390 (784)
++.. ...+++|++|+++..+-+.+++ |. ..++|..+..++-...+...+... .+.. ..+..++..+.|-.
T Consensus 145 LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~-~al~~La~~s~G~l 216 (620)
T PRK14948 145 LEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEP-EALTLVAQRSQGGL 216 (620)
T ss_pred HhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCCH
Confidence 7752 3456777777888888888876 55 447788888777666666554432 3322 33677777777643
No 279
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.98 E-value=1.5e-08 Score=99.44 Aligned_cols=193 Identities=22% Similarity=0.346 Sum_probs=130.9
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEeccc
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPE 529 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~ 529 (784)
..+.+...++.|.+..++.|.+.... |.. | .|..++||+|..|||||+|+||+-++. +...+.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34567889999999999998765443 221 3 346779999999999999999999876 46788888877
Q ss_pred chhcccCcchHHHHHHHHHhhhCC-CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC--CCcEEEEEec
Q 042193 530 LLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA--KKTVFIIGAT 606 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vi~aT 606 (784)
+.. +-.+++..+... .-|||.|++-. +. .+.-...|-..|||... ..+|++-+|+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e~---gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF----------EE---GDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC----------CC---CchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 642 223343333222 24899999754 11 12234555566787543 4589999999
Q ss_pred CCCCCCC--------------------ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHH----HHHHH
Q 042193 607 NRPDVID--------------------PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLS----ALARY 661 (784)
Q Consensus 607 n~~~~ld--------------------~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~----~la~~ 661 (784)
|+...|. +.+.-..||...+.|++++.++...|+..+++..+++-+. .+. .-|..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9875442 1111123999999999999999999999999998877532 222 22333
Q ss_pred cCCCCHHHHHHHHHH
Q 042193 662 THGFSGADITEICQR 676 (784)
Q Consensus 662 ~~g~sg~di~~l~~~ 676 (784)
-.|-||+--.+.++.
T Consensus 262 rg~RSGR~A~QF~~~ 276 (287)
T COG2607 262 RGGRSGRVAWQFIRD 276 (287)
T ss_pred cCCCccHhHHHHHHH
Confidence 466777655554443
No 280
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.97 E-value=1e-08 Score=114.05 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=28.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF 248 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~ 248 (784)
+.+.+++-+.|+|.+||||||++++|-+.+...
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788999999999999999999999887543
No 281
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=2.1e-08 Score=115.58 Aligned_cols=184 Identities=15% Similarity=0.243 Sum_probs=117.2
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL------- 251 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~------- 251 (784)
+++.+-+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+.+|+.+.+....
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4677889999999999999988876531 224469999999999999999999998662100
Q ss_pred ---Ee------chhhhh-------hhcc---hhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHH
Q 042193 252 ---IN------GPEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIV 308 (784)
Q Consensus 252 ---v~------~~~l~~-------~~~g---~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 308 (784)
-. |..+.. ...+ ..-..++.+.+.. ......+++|||+|.+.. ...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~ 144 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAF 144 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHH
Confidence 00 000100 0011 1123455544443 223456999999988842 124
Q ss_pred HHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcC
Q 042193 309 SQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTH 387 (784)
Q Consensus 309 ~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~ 387 (784)
+.|+..++... ..+++|.+|+.+..+-+.+++ |. ..+++..++..+-...+...+....+ .++..++.++..+.
T Consensus 145 naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 56777776533 245555556667788888876 43 45789999888877777765543332 23344677787777
Q ss_pred CCc
Q 042193 388 GYV 390 (784)
Q Consensus 388 g~~ 390 (784)
|..
T Consensus 220 Gdl 222 (620)
T PRK14954 220 GSM 222 (620)
T ss_pred CCH
Confidence 643
No 282
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=3e-08 Score=108.02 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=119.9
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcE-------------
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 522 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~------------- 522 (784)
...+++|.|.+.+++.|...+.. -+.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 34678999999999999877653 13456799999999999999999999752100
Q ss_pred EEEe-------------cccchhccc---Cc--------chHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCC
Q 042193 523 VSVK-------------GPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVG 574 (784)
Q Consensus 523 i~v~-------------~~~l~~~~~---g~--------~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~ 574 (784)
+.+. -+++.--.. +. .-..||.+-+.. ....+.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0000 011110000 00 123455554443 34567899999999863
Q ss_pred CCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccC
Q 042193 575 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD 654 (784)
Q Consensus 575 ~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~ 654 (784)
....|.||..++... .+.++|.+|+.++.+.|.+.+ |+ ..+.|++|+.++-.+++...... ..+..
T Consensus 155 ------~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 346688999988543 345666688888888888776 77 48899999999988888765421 11122
Q ss_pred HHHHHHHcCCCCHHHHHHHHH
Q 042193 655 LSALARYTHGFSGADITEICQ 675 (784)
Q Consensus 655 ~~~la~~~~g~sg~di~~l~~ 675 (784)
+..++..+.|--+ ...+++.
T Consensus 221 ~~~l~~~s~Gsp~-~Al~ll~ 240 (365)
T PRK07471 221 RAALAALAEGSVG-RALRLAG 240 (365)
T ss_pred HHHHHHHcCCCHH-HHHHHhc
Confidence 3567777777444 3333443
No 283
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-09 Score=122.97 Aligned_cols=145 Identities=23% Similarity=0.378 Sum_probs=109.8
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEecccch--hcccCcchHHHHHHHHHhhhCCCeEEEE
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFF 559 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~i 559 (784)
+...+-+|+|+||+|||.++.-+|... +...+.++...+. .+|-|+.|.+++.+.+......+.||||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 334557899999999999999999875 3566777776664 6789999999999999999888999999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC-----CCCccccCCCCcccccccCCCCHH
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD-----VIDPALLRPGRLDQLIYIPLPDEA 634 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~ 634 (784)
||||.+.+..+..+ + .-..-|-|--.| ....+-+||||..-+ +-|+||-| ||. .|++..|+.+
T Consensus 269 DEiHtiVGAG~~~G----~-a~DAaNiLKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e 336 (786)
T COG0542 269 DEIHTIVGAGATEG----G-AMDAANLLKPAL----ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVE 336 (786)
T ss_pred echhhhcCCCcccc----c-ccchhhhhHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHH
Confidence 99999998643221 1 111222222222 345678899987543 34999999 995 8899999999
Q ss_pred HHHHHHHHHhccCC
Q 042193 635 SRLQIFKACLRKSP 648 (784)
Q Consensus 635 ~r~~il~~~~~~~~ 648 (784)
+-..||+-.-.++.
T Consensus 337 ~ti~ILrGlk~~yE 350 (786)
T COG0542 337 DTIAILRGLKERYE 350 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987665543
No 284
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.97 E-value=3.1e-09 Score=116.06 Aligned_cols=122 Identities=26% Similarity=0.477 Sum_probs=77.3
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCC--c-----EEEEec----ccchhcc----cCcc--hHHHHHHHHHhhhC--C
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQA--N-----FVSVKG----PELLTMW----FGES--EANVREIFDKARQS--A 553 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~--~-----~i~v~~----~~l~~~~----~g~~--~~~i~~~f~~a~~~--~ 553 (784)
..++++|+||||||||++|+.+|..+.. . ++.+.. .+++..+ +|-. ......+.+.|... .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 3567999999999999999999998742 1 222221 1222222 1110 01223344556543 4
Q ss_pred CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC--------------------CCCCCcEEEEEecCCCC---
Q 042193 554 PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG--------------------MNAKKTVFIIGATNRPD--- 610 (784)
Q Consensus 554 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--------------------~~~~~~v~vi~aTn~~~--- 610 (784)
|+++|||||++.. ..++..++++.|+. +.-..++.||||+|..+
T Consensus 273 ~~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 273 KYVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred CcEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 7999999998743 24455555555542 22346899999999987
Q ss_pred -CCCccccCCCCcccccccCC
Q 042193 611 -VIDPALLRPGRLDQLIYIPL 630 (784)
Q Consensus 611 -~ld~allr~gRf~~~i~~~~ 630 (784)
.+|.|++| ||. .|.+.+
T Consensus 340 ~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hhccHHHHh--hhh-eEEecC
Confidence 79999999 995 444543
No 285
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.96 E-value=4.4e-09 Score=123.28 Aligned_cols=155 Identities=25% Similarity=0.348 Sum_probs=102.1
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC------------------
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ------------------ 519 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------------------ 519 (784)
.|.+|.|++.++..|.-....| ...|+||.|++|||||++|++++..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3678999999988775443322 124699999999999999999999872
Q ss_pred -----------------CcEEEEecccchhcccCcc--hHHHH--------HHHHHhhhCCCeEEEEeccchhhhhcCCC
Q 042193 520 -----------------ANFVSVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDELDSIATQRGAS 572 (784)
Q Consensus 520 -----------------~~~i~v~~~~l~~~~~g~~--~~~i~--------~~f~~a~~~~p~vl~iDEid~l~~~r~~~ 572 (784)
.+|+.+...-.....+|.. ++.+. -++..| .-.++|||||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 3555543332222223321 11110 011111 12499999999864
Q ss_pred CCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCC-CCCCccccCCCCcccccccCCC-CHHHHHHH
Q 042193 573 VGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP-DVIDPALLRPGRLDQLIYIPLP-DEASRLQI 639 (784)
Q Consensus 573 ~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~-~~ld~allr~gRf~~~i~~~~p-~~~~r~~i 639 (784)
..+++.|+..|+... ...++.+|+|+|.. ..+.++|+. ||+..|.++.| +.+++.++
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 456788888886421 12468999999954 367889998 99999999877 46778888
Q ss_pred HHHHh
Q 042193 640 FKACL 644 (784)
Q Consensus 640 l~~~~ 644 (784)
++...
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87543
No 286
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.96 E-value=4e-09 Score=122.32 Aligned_cols=55 Identities=29% Similarity=0.495 Sum_probs=44.8
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN 521 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~ 521 (784)
+.+|..-|+++.|.+++++.+...+.. ..+++|+||||||||+++++++..++..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 446677889999999999888766542 2378999999999999999999988643
No 287
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1e-08 Score=110.54 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=114.8
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC--------cEEEEeccc
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFVSVKGPE 529 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------~~i~v~~~~ 529 (784)
+|+++.|++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+-+ .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999998877642 234556899999999999999999997532 222222210
Q ss_pred chhcccCcchHHHHHHHHH----hhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEe
Q 042193 530 LLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA 605 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~----a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~a 605 (784)
++. -.-..++.+.+. +......|++||++|.+. ....|.||..|+..+ .++++|.+
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEepp--~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEPP--KGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCCC--CCeEEEEE
Confidence 000 112345555543 334456799999998763 335688999999643 34444445
Q ss_pred cCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCH
Q 042193 606 TNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSG 667 (784)
Q Consensus 606 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg 667 (784)
|+.++.+-|.+.+ |. .+++|++|+.++....+..... .++ ...+..++..+.|-.+
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN--DIK-EEEKKSAIAFSDGIPG 185 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc--CCC-HHHHHHHHHHcCCCHH
Confidence 5678888888887 77 4889999999888877776543 222 2335567777766444
No 288
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=3.6e-09 Score=99.00 Aligned_cols=128 Identities=36% Similarity=0.505 Sum_probs=80.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc---EEEEechhhhhh--------------hcchhHHHHHHHHHHHHhcCCeE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 283 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~---~~~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 283 (784)
+..++|+|||||||||+++.++..+... ++.+++...... ...........+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999998765 777776543221 12234456678888888877899
Q ss_pred EEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC-CCCCCHHHHhcCCcceEEEeCCC
Q 042193 284 IFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR-PNSIDPALRRFGRFDREIDIGVP 355 (784)
Q Consensus 284 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~-~~~ld~al~r~~rf~~~i~i~~p 355 (784)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654311100 00000001111122345677778875 3344555554 77777766543
No 289
>PHA02244 ATPase-like protein
Probab=98.93 E-value=2.9e-08 Score=105.77 Aligned_cols=121 Identities=25% Similarity=0.358 Sum_probs=78.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcc---hhHH-HHHHHHHHHHhcCCeEEEeehhhhhcCCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG---ESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPKR 296 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g---~~~~-~l~~vf~~a~~~~p~il~iDEid~l~~~~ 296 (784)
+.+|||+||||||||++|+++|..++.+++.+++..-.....| .... .-..++... ....+++|||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~- 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE- 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH-
Confidence 5689999999999999999999999999998885311000011 0000 001222222 34579999999877532
Q ss_pred CCCchHHHHHHHHHHHHHhh---------ccccCCcEEEEEEcCCC-----------CCCCHHHHhcCCcceEEEeCCCC
Q 042193 297 EKTNGEVERRIVSQLLTLMD---------GLKSRAHVVVMGATNRP-----------NSIDPALRRFGRFDREIDIGVPD 356 (784)
Q Consensus 297 ~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~vivI~atn~~-----------~~ld~al~r~~rf~~~i~i~~p~ 356 (784)
+...|...++ ....+.++.+|+|+|.+ ..++++++. ||- .+++..|.
T Consensus 196 ----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~ 262 (383)
T PHA02244 196 ----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDE 262 (383)
T ss_pred ----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCc
Confidence 2223333332 22234678999999973 467888887 885 58899987
Q ss_pred H
Q 042193 357 E 357 (784)
Q Consensus 357 ~ 357 (784)
.
T Consensus 263 ~ 263 (383)
T PHA02244 263 K 263 (383)
T ss_pred H
Confidence 4
No 290
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.92 E-value=1.2e-08 Score=112.28 Aligned_cols=135 Identities=19% Similarity=0.285 Sum_probs=81.3
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecc-cchhcccCcc-hHHH--HHHHHHhhhC---CCeEEEEeccc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDELD 563 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~-~l~~~~~g~~-~~~i--~~~f~~a~~~---~p~vl~iDEid 563 (784)
...++||+||||||||++|++++..++. +|..+... ......+|.. -... ..-|...... ...++|+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 3456999999999999999999997653 33332221 0111222311 0110 1112211111 23499999997
Q ss_pred hhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------CCCcEEEEEecCCCC---CCCccccCCCCcccccccCCCC
Q 042193 564 SIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATNRPD---VIDPALLRPGRLDQLIYIPLPD 632 (784)
Q Consensus 564 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~~~p~ 632 (784)
.+ ...+++.||..|+.-. .....++++|||... ...++++. ||-..+.+|+|+
T Consensus 118 ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 118 KA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred cC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 53 3668899999985321 122345666667432 23458888 998899999997
Q ss_pred -HHHHHHHHHHH
Q 042193 633 -EASRLQIFKAC 643 (784)
Q Consensus 633 -~~~r~~il~~~ 643 (784)
.++-.+++...
T Consensus 182 ~~~~e~~lL~~~ 193 (498)
T PRK13531 182 DKANFRSMLTSQ 193 (498)
T ss_pred chHHHHHHHHcc
Confidence 45557787654
No 291
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=4.6e-08 Score=113.82 Aligned_cols=186 Identities=18% Similarity=0.262 Sum_probs=118.9
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE---------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF--------- 249 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------- 249 (784)
+++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+||||+|+.+++.+++..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4677889999999999999988776531 1244689999999999999999999886421
Q ss_pred ----------------EEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHH
Q 042193 250 ----------------FLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVS 309 (784)
Q Consensus 250 ----------------~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 309 (784)
+.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~n 138 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFN 138 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHH
Confidence 1111110 011223444443332 23346999999998742 2345
Q ss_pred HHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCC
Q 042193 310 QLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHG 388 (784)
Q Consensus 310 ~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 388 (784)
.|+..++... ..+++|.+++.++.+.+.+++ |. ..++|..++..+...+++..+....+. ++..+..++..+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777776543 345555566777777777776 44 347888898888888877665443322 23346677777766
Q ss_pred CcHHHHHHHHH
Q 042193 389 YVGADLAALCT 399 (784)
Q Consensus 389 ~~~~dl~~l~~ 399 (784)
...++...+.
T Consensus 214 -dlr~al~~Le 223 (585)
T PRK14950 214 -SMRDAENLLQ 223 (585)
T ss_pred -CHHHHHHHHH
Confidence 3344444433
No 292
>PRK06620 hypothetical protein; Validated
Probab=98.89 E-value=2.2e-08 Score=101.17 Aligned_cols=132 Identities=15% Similarity=0.290 Sum_probs=87.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 301 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~ 301 (784)
..++||||||||||+|++++++..+..+ +..... . ...+ ...++++|||++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~-------~----~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFF-------N----EEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhh-------c----hhHH-----hcCCEEEEeccccch--------
Confidence 6799999999999999999998876432 221110 0 0111 133689999999441
Q ss_pred HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC--CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHcC--CCccc
Q 042193 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS--IDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTKN--MKLAE 375 (784)
Q Consensus 302 ~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~--ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~--~~~~~ 375 (784)
. ..|..+++.+...+..++++++..|.. + +.+++ |+. ..+.+..|+.+.+..+++..... +.+.+
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 0 134555555555667788888776664 4 77877 654 35899999999999999877653 33443
Q ss_pred chhhhHHHHhcCCC
Q 042193 376 DVDLERVARDTHGY 389 (784)
Q Consensus 376 ~~~l~~la~~t~g~ 389 (784)
+ -++.++....+-
T Consensus 170 e-v~~~L~~~~~~d 182 (214)
T PRK06620 170 Q-IIDFLLVNLPRE 182 (214)
T ss_pred H-HHHHHHHHccCC
Confidence 3 367777776653
No 293
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.88 E-value=1e-09 Score=98.68 Aligned_cols=104 Identities=32% Similarity=0.441 Sum_probs=60.9
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEEecc-cch-hcccCc---------chHHHHHHHHHhhhCCCeEEEEeccch
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSVKGP-ELL-TMWFGE---------SEANVREIFDKARQSAPCVLFFDELDS 564 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~-~l~-~~~~g~---------~~~~i~~~f~~a~~~~p~vl~iDEid~ 564 (784)
++||.|+||+|||++|+++|..++..|..|... +++ +...|. .+-.-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999988653 442 111111 111112233 24999999986
Q ss_pred hhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCCC-----CCCccccCCCCc
Q 042193 565 IATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD-----VIDPALLRPGRL 622 (784)
Q Consensus 565 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~~-----~ld~allr~gRf 622 (784)
+..++++.||..|.... -....+||||-|..+ .|++|++. ||
T Consensus 74 --------------appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 --------------APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------------S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------------CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 34678899999987431 235689999999876 57788887 77
No 294
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.86 E-value=7.5e-08 Score=104.38 Aligned_cols=157 Identities=21% Similarity=0.391 Sum_probs=107.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
+...++||||+|+|||+|++++++.. +..++++...++...........-..-|.+-. .-.+++||+++++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35679999999999999999999876 23567777777766555444333334455544 456999999999986
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC---CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC
Q 042193 295 KREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM 371 (784)
Q Consensus 295 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~ 371 (784)
+.. ....+...+..+...++-+|+.+...|..+ .+.|++.......+.+.+|+.+.|..||+......
T Consensus 190 k~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 190 KER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred Chh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 632 234566666666666666777776777655 57887722334557899999999999999865443
Q ss_pred --CcccchhhhHHHHhcCC
Q 042193 372 --KLAEDVDLERVARDTHG 388 (784)
Q Consensus 372 --~~~~~~~l~~la~~t~g 388 (784)
.+.+++ +..++.....
T Consensus 261 ~~~i~~ev-~~~la~~~~~ 278 (408)
T COG0593 261 GIEIPDEV-LEFLAKRLDR 278 (408)
T ss_pred CCCCCHHH-HHHHHHHhhc
Confidence 344433 5566655443
No 295
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.86 E-value=1.5e-09 Score=102.30 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=68.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh------hhhcch---hHHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM------SKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~------~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
+|+|+||||||||++++.+|..++.+++.+++.... ..+.-. ..-.-..+.+.. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 589999999999999999999999999888875422 221110 000000000011 146899999998653
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccc-----------cCC------cEEEEEEcCCCC----CCCHHHHhcCCc
Q 042193 294 PKREKTNGEVERRIVSQLLTLMDGLK-----------SRA------HVVVMGATNRPN----SIDPALRRFGRF 346 (784)
Q Consensus 294 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~vivI~atn~~~----~ld~al~r~~rf 346 (784)
..+...|+.+++.-. ... ++.+|+|+|+.+ .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 235555666654311 111 389999999988 88999988 65
No 296
>PRK04132 replication factor C small subunit; Provisional
Probab=98.86 E-value=3.1e-08 Score=116.91 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=114.6
Q ss_pred eEEEc--CCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchHHHHHHHHHhhhC------CCeEEEEeccc
Q 042193 497 VLFYG--PPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 563 (784)
Q Consensus 497 ~ll~G--p~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~------~p~vl~iDEid 563 (784)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 56899999987422 23555555443322 23699999999
Q ss_pred hhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 042193 564 SIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 564 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~ 643 (784)
.+.. ..++.|+..|+... .++.+|.+||.++.+-+++.+ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt~--------------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCH--------------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 8743 35688888888643 467788889999999888887 87 58899999999988888888
Q ss_pred hccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 644 LRKSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 644 ~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
+++.++. ++..+..++..++| +.+..-++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7765554 33458888888887 3344445555544
No 297
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.9e-08 Score=112.05 Aligned_cols=194 Identities=22% Similarity=0.281 Sum_probs=130.1
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE--------E
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFF--------L 251 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~--------~ 251 (784)
++.+-.|+++.|.+.....|..++..- ......||.||.||||||+||.+|+.+++.-- .
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 567778999999999999999888652 12346899999999999999999999876420 1
Q ss_pred Eechhhhhh-h---------cchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 042193 252 INGPEIMSK-L---------AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG 317 (784)
Q Consensus 252 v~~~~l~~~-~---------~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 317 (784)
..|.++... + ....-..+|.+.+.+ ....+-|++|||+|.+.. ...+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 111222111 0 011223456666554 334567999999998853 244566666654
Q ss_pred cccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCccc-chhhhHHHHhcCCCcHHHHHH
Q 042193 318 LKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAE-DVDLERVARDTHGYVGADLAA 396 (784)
Q Consensus 318 ~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~-~~~l~~la~~t~g~~~~dl~~ 396 (784)
...+|++|.+|..++.+++.+.+ |.. .+.+...+.+.-...|...+....+.. +.-+..+++..+| +.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 34578899999999999998876 432 246777788777777777666555443 3346667777776 4466666
Q ss_pred HHHHHH
Q 042193 397 LCTEAA 402 (784)
Q Consensus 397 l~~~a~ 402 (784)
++..+.
T Consensus 220 lLDq~i 225 (515)
T COG2812 220 LLDQAI 225 (515)
T ss_pred HHHHHH
Confidence 666654
No 298
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.4e-08 Score=108.39 Aligned_cols=183 Identities=18% Similarity=0.266 Sum_probs=121.5
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc----------EEEEec
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FVSVKG 527 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~----------~i~v~~ 527 (784)
.|++|.|++.+++.|...+.. -+.+..+||+||+|+||+++|.++|..+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 478999999999999887753 1345679999999999999999999975211 111222
Q ss_pred ccchhcc-----cCc--------------------chHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCC
Q 042193 528 PELLTMW-----FGE--------------------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGG 578 (784)
Q Consensus 528 ~~l~~~~-----~g~--------------------~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~ 578 (784)
+|+.--+ -|. .-..++.+-+.+. .....|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 3322000 010 0124555554443 3456799999998864
Q ss_pred chHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHH
Q 042193 579 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 658 (784)
Q Consensus 579 ~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 658 (784)
....|.||..|+... ..+ +|..|+.++.|-|.+.+ |. ..+.|++|+.++..+++.......... .+...+
T Consensus 138 --~~aaNaLLK~LEEPp--~~~-fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~~--~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG--NGT-LILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEILN--INFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC--CCe-EEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccch--hHHHHH
Confidence 335689999998754 334 45566788999999887 87 588999999999988888764322211 224677
Q ss_pred HHHcCCCCHHHHHHHHH
Q 042193 659 ARYTHGFSGADITEICQ 675 (784)
Q Consensus 659 a~~~~g~sg~di~~l~~ 675 (784)
+....|--+.- .++++
T Consensus 208 ~~~a~Gs~~~a-l~~l~ 223 (314)
T PRK07399 208 LALAQGSPGAA-IANIE 223 (314)
T ss_pred HHHcCCCHHHH-HHHHH
Confidence 88777744433 33443
No 299
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=109.39 Aligned_cols=129 Identities=28% Similarity=0.425 Sum_probs=87.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh--hhcchhHHHH------------HHHHHHHHhcCCeEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS--KLAGESESNL------------RKAFEEAEKNAPSIIF 285 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~--~~~g~~~~~l------------~~vf~~a~~~~p~il~ 285 (784)
.+.++||.||||||||++++.+|..++.+++.++|..-.. ...|...-.. +-+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3678999999999999999999999999999998853321 1111111110 11111111 4999
Q ss_pred eehhhhhcCCCCCCchHHHHHHHHHHHHHhhc----------cccCCcEEEEEEcC-----CCCCCCHHHHhcCCcceEE
Q 042193 286 IDEIDSIAPKREKTNGEVERRIVSQLLTLMDG----------LKSRAHVVVMGATN-----RPNSIDPALRRFGRFDREI 350 (784)
Q Consensus 286 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~vivI~atn-----~~~~ld~al~r~~rf~~~i 350 (784)
+|||+...+ .+.+.|+..|+. +.-...++|++|.| ....+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999986643 355667777764 33446788999889 34567889988 898888
Q ss_pred EeCCCCHH-HHHHHHH
Q 042193 351 DIGVPDEV-GRLEVFR 365 (784)
Q Consensus 351 ~i~~p~~~-~R~~il~ 365 (784)
.++.|+.+ +...++.
T Consensus 185 ~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 185 YVDYPDSEEEERIILA 200 (329)
T ss_pred ecCCCCchHHHHHHHH
Confidence 99999544 4444433
No 300
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.84 E-value=1.4e-08 Score=98.67 Aligned_cols=112 Identities=24% Similarity=0.357 Sum_probs=74.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC----cEEEEechhhhhhhcchhHHHHHHHHHH----HHhcCCeEEEeehhhh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDS 291 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~----~~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~ 291 (784)
|..++||+||+|||||.+|+++|..+.. +++.+++.++.... +....+...+.. .......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457999999999999999999999985 89999998876511 101111111111 1111123999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCcEEEEEEcCCC
Q 042193 292 IAPKREKTNGEVERRIVSQLLTLMDGLK---------SRAHVVVMGATNRP 333 (784)
Q Consensus 292 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivI~atn~~ 333 (784)
+.+..+...+.....+.+.|+..+++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9987444444455677888888886422 12468888888854
No 301
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=3.9e-08 Score=105.66 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=101.9
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCC------------------------cEEEEecccchhcccCcchHHHHHHHHH
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFVSVKGPELLTMWFGESEANVREIFDK 548 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 548 (784)
.+.++||+||+|+|||++|+++|..+.+ .+..+...+- ++ .-+-..+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 4567999999999999999999997632 1222221110 00 0123455655544
Q ss_pred h----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCccc
Q 042193 549 A----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQ 624 (784)
Q Consensus 549 a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 624 (784)
+ ......|++||++|.+. ....|.||..|+.- ..+.++|.+|+.++.|-|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-
Confidence 4 33456799999999864 34669999999964 3567788889999999999987 885
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCH
Q 042193 625 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSG 667 (784)
Q Consensus 625 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg 667 (784)
.+.|++|+.++-.+.+..... ...+.+...++..+.|--+
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHH
Confidence 589999999888888775431 1223334566666766443
No 302
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.82 E-value=2e-08 Score=107.63 Aligned_cols=158 Identities=25% Similarity=0.416 Sum_probs=97.8
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCC-ceEEEECCCCCcHHHHHHHHHHHhCCc---------EEEE
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGTGKTLIARAVANETGAF---------FFLI 252 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~-~~vLL~GppGtGKTtla~~la~~l~~~---------~~~v 252 (784)
...|.+|.|+++.+..+.-... .++ .++||.|+|||||||+++++++.++.. +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4568899999998887653221 122 579999999999999999999998421 1111
Q ss_pred ec-hhh--------hhh-------hcchhHHHH-H-----H-------HHHHH--HhcCCeEEEeehhhhhcCCCCCCch
Q 042193 253 NG-PEI--------MSK-------LAGESESNL-R-----K-------AFEEA--EKNAPSIIFIDEIDSIAPKREKTNG 301 (784)
Q Consensus 253 ~~-~~l--------~~~-------~~g~~~~~l-~-----~-------vf~~a--~~~~p~il~iDEid~l~~~~~~~~~ 301 (784)
.+ ++. ... ..+.++..+ + . .|+.- ......+||+||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 10 000 000 000000000 0 0 11100 001125899999998742
Q ss_pred HHHHHHHHHHHHHhhccc-----------cCCcEEEEEEcCCCC-CCCHHHHhcCCcceEEEeCCCCH-HHHHHHHHHH
Q 042193 302 EVERRIVSQLLTLMDGLK-----------SRAHVVVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVFRIH 367 (784)
Q Consensus 302 ~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-~ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~ 367 (784)
.+.+.|+..|+.-. ...++++++++|..+ .+++++.. ||...+.++.|.. ++|.+|++..
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 35566777775321 234788999988755 57888877 9999999998877 8889998864
No 303
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.82 E-value=1.6e-08 Score=106.48 Aligned_cols=65 Identities=35% Similarity=0.556 Sum_probs=45.1
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccch
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPELL 531 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l~ 531 (784)
-+.+.|+.++++..--.+.. .+. +.-..+++||.||||||||.||-++|.++| .||+.++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik~-~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IKE-GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HHT-T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHH-------Hhc-ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 35678888887775443332 111 334467899999999999999999999997 799999998885
No 304
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.2e-07 Score=100.77 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=114.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-------EEEE-
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF-------FFLI- 252 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~-------~~~v- 252 (784)
+.+-.++++.|+++..+.+...+... ..+..+||+||+|+||||+|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 34456778999999999998877541 124469999999999999999999987541 1000
Q ss_pred ---ech-----------hhh---hh--h------cchhHHHHHHHHHH----HHhcCCeEEEeehhhhhcCCCCCCchHH
Q 042193 253 ---NGP-----------EIM---SK--L------AGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTNGEV 303 (784)
Q Consensus 253 ---~~~-----------~l~---~~--~------~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~ 303 (784)
.|. ++. .. . ..-.-..++.+.+. +......|++|||+|.+...
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-------- 156 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-------- 156 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH--------
Confidence 111 110 00 0 00011233433332 22344579999999988422
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHH
Q 042193 304 ERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVA 383 (784)
Q Consensus 304 ~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la 383 (784)
..+.|+..++.... +.++|..|+.++.+.+.+++ |. ..+.++.|+.++-.++|........+ ++..+..++
T Consensus 157 ---aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 157 ---AANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred ---HHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 34567788876433 44545556778888899987 66 57999999999999998864322221 122355666
Q ss_pred HhcCCCcHH
Q 042193 384 RDTHGYVGA 392 (784)
Q Consensus 384 ~~t~g~~~~ 392 (784)
..+.|-...
T Consensus 228 ~~s~G~pr~ 236 (351)
T PRK09112 228 QRSKGSVRK 236 (351)
T ss_pred HHcCCCHHH
Confidence 666665443
No 305
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2e-08 Score=106.13 Aligned_cols=135 Identities=27% Similarity=0.422 Sum_probs=97.2
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-hcccCcc-hHHHHHHHHHhh----hCCCeEEEEeccchhhhh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQ 568 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~ 568 (784)
.++||.||+|+|||.||+.||+-++.||...++..+. ..|+|+- |.-+..+++.|. +....|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4599999999999999999999999999999998886 4689886 566777877763 223459999999999844
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCC-------CCCCccccCCCCc-ccccccC
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP-------DVIDPALLRPGRL-DQLIYIP 629 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~-------~~ld~allr~gRf-~~~i~~~ 629 (784)
-.......+-..+-++..||..++|-. .....+.|-|||-. ..||.-+.| |. |..+-|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGFg 384 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGFG 384 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhcccC
Confidence 322111112234668899999998741 12345666666643 456777776 55 4677888
Q ss_pred CC
Q 042193 630 LP 631 (784)
Q Consensus 630 ~p 631 (784)
.|
T Consensus 385 ~~ 386 (564)
T KOG0745|consen 385 AP 386 (564)
T ss_pred CC
Confidence 77
No 306
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.80 E-value=8.2e-08 Score=104.55 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=25.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~ 244 (784)
+.+.+++.+.|+||+||||||+++++++.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 34567889999999999999999999975
No 307
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.80 E-value=5.9e-08 Score=108.60 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=131.8
Q ss_pred eeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEecccchhc----------ccCcch------HHHHHHHHHh
Q 042193 496 GVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKGPELLTM----------WFGESE------ANVREIFDKA 549 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~~~l~~~----------~~g~~~------~~i~~~f~~a 549 (784)
.+.+.|-||||||.++..+..++ .+.++.|++-.+.+. +.|+.- ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 48899999999999999988854 367888888776432 223321 1233333311
Q ss_pred -hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-CCCcEEEEEecCCCCCCCccccC--CCCcc-c
Q 042193 550 -RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNRPDVIDPALLR--PGRLD-Q 624 (784)
Q Consensus 550 -~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vi~aTn~~~~ld~allr--~gRf~-~ 624 (784)
....++|++|||+|.|..++ . .-|.+.+|... .+.+++||+..|..+.....+.. .+|++ .
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------Q---dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------Q---DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------H---HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 24467999999999998642 2 33444555433 45689999999988765544431 23666 6
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 042193 625 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSG--ADITEICQRACKYAIRENIEKDIERERSGKRKREN 702 (784)
Q Consensus 625 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg--~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 702 (784)
.|.|.+++.++.++|+...++........-++.+|+.-...|| +....+|+.|+..|-.+....
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~-------------- 635 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG-------------- 635 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc--------------
Confidence 7899999999999999999987643333335555555555555 233348999998887655310
Q ss_pred CccccccCcccccHHHHHHHHhhccC
Q 042193 703 PEAMEVDDVDEITAAHFEESMKYARR 728 (784)
Q Consensus 703 ~~~~~~~~~~~v~~~~~~~al~~~~~ 728 (784)
..+....|+..|+.+|+..+.-
T Consensus 636 ----k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 636 ----KLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred ----cccccceeehHHHHHHHHHHhh
Confidence 0112236888888888887633
No 308
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.80 E-value=1e-07 Score=106.79 Aligned_cols=163 Identities=25% Similarity=0.368 Sum_probs=104.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcC
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~ 294 (784)
++.+-+||+||||-||||||+.+|++.|..++.+|+++-.+. .....++..+.+.- ....|..|++||||--.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 344558999999999999999999999999999999875432 22333443333321 12679999999998332
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc-------ccc---------C---CcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCC
Q 042193 295 KREKTNGEVERRIVSQLLTLMDG-------LKS---------R---AHVVVMGATNRPNSIDPALRRFGRFDREIDIGVP 355 (784)
Q Consensus 295 ~~~~~~~~~~~~v~~~Ll~~ld~-------~~~---------~---~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p 355 (784)
...+..++.++.. -.. + -.--||+.||+. .-|+|+-..-|...+.|..|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCC
Confidence 2234444444431 000 0 122467778875 57888876678888999999
Q ss_pred CHHHHHHHHHHHHcCCCcccc-hhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 356 DEVGRLEVFRIHTKNMKLAED-VDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 356 ~~~~R~~il~~~~~~~~~~~~-~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
....-.+-|+..+.+-.+..+ ..+..+.+.+++ |+...+..
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINt 510 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINT 510 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHH
Confidence 888777777766654443322 235566666654 55444443
No 309
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=6.5e-08 Score=105.85 Aligned_cols=121 Identities=27% Similarity=0.457 Sum_probs=74.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc-------EEEEec----hhhhhhhcch-h-----HHHHHHHHHHHHh--cCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF-------FFLING----PEIMSKLAGE-S-----ESNLRKAFEEAEK--NAP 281 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~-------~~~v~~----~~l~~~~~g~-~-----~~~l~~vf~~a~~--~~p 281 (784)
+.+++|+||||||||++|+.+|..+... .+.+.. .+++..+... . ...+..+++.|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5789999999999999999999987531 122221 2333222100 0 1122334455544 357
Q ss_pred eEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh--------------------ccccCCcEEEEEEcCCCC----CCC
Q 042193 282 SIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD--------------------GLKSRAHVVVMGATNRPN----SID 337 (784)
Q Consensus 282 ~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld--------------------~~~~~~~vivI~atn~~~----~ld 337 (784)
.++||||++.....+ +...++.+++ .+....++.+|||+|..+ .+|
T Consensus 274 ~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccCHHH----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 999999998654322 1112222222 234456899999999887 789
Q ss_pred HHHHhcCCcceEEEeCC
Q 042193 338 PALRRFGRFDREIDIGV 354 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~ 354 (784)
.|++| ||.. |++.+
T Consensus 344 ~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 344 YALRR--RFSF-IDIEP 357 (459)
T ss_pred HHHHh--hhhe-EEecC
Confidence 99999 8844 55554
No 310
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.80 E-value=4.4e-07 Score=89.37 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=115.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 256 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~ 256 (784)
..+.+.+.+|.|++.+++.+.+--.... + -.|.++|||+|..|||||+|++++-++. +..++.|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~------~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA------E---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH------c---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3566788899999999988754332211 1 1456789999999999999999998887 45678888776
Q ss_pred hhhhhcchhHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc-cc-CCcEEEEEEcCCC
Q 042193 257 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL-KS-RAHVVVMGATNRP 333 (784)
Q Consensus 257 l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~-~~~vivI~atn~~ 333 (784)
+.. +-.+++..+. ...-|+|+|++.+=.. ..-...|...+++- .. ..+|++-+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~g----------d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEEG----------DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCCC----------chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 643 2333443332 3346999999743211 11234566666653 33 3578888999987
Q ss_pred CCCCHHH--------------------HhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCccc
Q 042193 334 NSIDPAL--------------------RRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAE 375 (784)
Q Consensus 334 ~~ld~al--------------------~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~ 375 (784)
+.|+..+ .-..||.-.+.|..++.++-+.|+..+++...+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6554322 12368999999999999999999998887776653
No 311
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=2.2e-07 Score=107.86 Aligned_cols=177 Identities=18% Similarity=0.273 Sum_probs=119.3
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+++.+.+|++|.|++..++.|...+... ..+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 5677889999999999999998877531 124469999999999999999999987532
Q ss_pred ---------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHH
Q 042193 249 ---------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVS 309 (784)
Q Consensus 249 ---------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 309 (784)
++.+++.+ ......++.+...+.. ....+++|||+|.+.. ...+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~n 139 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFN 139 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHH
Confidence 12222211 0112345666555432 2345999999988842 2345
Q ss_pred HHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCC
Q 042193 310 QLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHG 388 (784)
Q Consensus 310 ~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 388 (784)
.|+..++... ...++|.+|+.+..+-+.+++ |. ..+++..++.++-...++..+....+. +...+..++..+.|
T Consensus 140 aLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777787643 345556666667788888887 44 347899998888887877665544433 22346777777765
Q ss_pred C
Q 042193 389 Y 389 (784)
Q Consensus 389 ~ 389 (784)
-
T Consensus 215 d 215 (614)
T PRK14971 215 G 215 (614)
T ss_pred C
Confidence 3
No 312
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.77 E-value=5.6e-08 Score=109.83 Aligned_cols=142 Identities=25% Similarity=0.375 Sum_probs=87.3
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecccch----
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGPELL---- 531 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~~l~---- 531 (784)
.+.++.|+..+++.+.-.+ .....++|+||||||||++++++++.+.. .-..+....+.
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 5778888888876654332 22345999999999999999999975421 01111111110
Q ss_pred ----------------------hcccCcc-hHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 532 ----------------------TMWFGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 532 ----------------------~~~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
...+|.. ....+ .+..|.. .+|||||++.+. ..+++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG-~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG-EISLAHN---GVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchh-hhhccCC---CeEecCChhhCC--------------HHHHHHHH
Confidence 0011111 01111 2333333 499999998753 45667777
Q ss_pred HHhhCCC-----------CCCcEEEEEecCCC-----C------------------CCCccccCCCCcccccccCCCCHH
Q 042193 589 TEMDGMN-----------AKKTVFIIGATNRP-----D------------------VIDPALLRPGRLDQLIYIPLPDEA 634 (784)
Q Consensus 589 ~~ld~~~-----------~~~~v~vi~aTn~~-----~------------------~ld~allr~gRf~~~i~~~~p~~~ 634 (784)
+.|+... ...++.+|+++|.- . .|...++. |||..+.++.++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7775432 12467899999852 1 47788888 99999999977544
No 313
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.77 E-value=5.2e-09 Score=102.85 Aligned_cols=139 Identities=28% Similarity=0.434 Sum_probs=65.2
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC----------cEEEEec-
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA----------NFVSVKG- 527 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------~~i~v~~- 527 (784)
|.+|.|++.+|+.|.-+.. | ..++||+||||||||++|+.+...+.. ...++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999998865543 2 357999999999999999999986521 0000000
Q ss_pred ---------ccchhcccCcchHHHHHH-----------HHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHH
Q 042193 528 ---------PELLTMWFGESEANVREI-----------FDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQL 587 (784)
Q Consensus 528 ---------~~l~~~~~g~~~~~i~~~-----------f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 587 (784)
..+... ..+.. ...+ +..|.. .|||+||+-.+ .+.+++.|
T Consensus 67 ~~~~~~~~~~Pfr~p--hhs~s-~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~L 126 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAP--HHSAS-EAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDAL 126 (206)
T ss_dssp S---EEEE---EEEE---TT---HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHH
T ss_pred CCCCceecCCCcccC--CCCcC-HHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHH
Confidence 000000 00000 1111 112222 49999998653 46789999
Q ss_pred HHHhhCCC-----------CCCcEEEEEecCCC-----------------------CCCCccccCCCCcccccccCCCCH
Q 042193 588 LTEMDGMN-----------AKKTVFIIGATNRP-----------------------DVIDPALLRPGRLDQLIYIPLPDE 633 (784)
Q Consensus 588 l~~ld~~~-----------~~~~v~vi~aTn~~-----------------------~~ld~allr~gRf~~~i~~~~p~~ 633 (784)
+.-|+... -..+.++|+|+|.= ..|...++. |||..+.++..+.
T Consensus 127 r~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 127 RQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHHHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 98887432 12357899999841 235667777 8888888877655
Q ss_pred H
Q 042193 634 A 634 (784)
Q Consensus 634 ~ 634 (784)
+
T Consensus 205 ~ 205 (206)
T PF01078_consen 205 E 205 (206)
T ss_dssp -
T ss_pred C
Confidence 4
No 314
>PRK09087 hypothetical protein; Validated
Probab=98.76 E-value=7.8e-08 Score=98.05 Aligned_cols=140 Identities=23% Similarity=0.294 Sum_probs=90.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN 300 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 300 (784)
...++|+||+|||||+|+++++...+.. +++..++... ++..... .++++||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-----
Confidence 3459999999999999999999876544 3433222111 1111111 47999999976311
Q ss_pred hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC---CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccc
Q 042193 301 GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AED 376 (784)
Q Consensus 301 ~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~ 376 (784)
...|...++.+......++++++..|..+ .+.+++.-.....+++..|+.+.|.++++..++...+ .++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12356666666565667777777666533 5677762223467899999999999999988765433 223
Q ss_pred hhhhHHHHhcCC
Q 042193 377 VDLERVARDTHG 388 (784)
Q Consensus 377 ~~l~~la~~t~g 388 (784)
.-++.++....+
T Consensus 176 ev~~~La~~~~r 187 (226)
T PRK09087 176 HVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHhhh
Confidence 336777777664
No 315
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.76 E-value=4.3e-08 Score=106.38 Aligned_cols=126 Identities=29% Similarity=0.420 Sum_probs=88.3
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhC------------------------CcEEEEecccchhcccCcchHHHHHHHHHhh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQ------------------------ANFVSVKGPELLTMWFGESEANVREIFDKAR 550 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~------------------------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~ 550 (784)
..+||+||||+|||++|.++|+.+. ..++.++.++....- .....++.+-+...
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~ 102 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLS 102 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhc
Confidence 3699999999999999999999875 467777777653321 12344555544433
Q ss_pred h----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCccccc
Q 042193 551 Q----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLI 626 (784)
Q Consensus 551 ~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i 626 (784)
. ....|++|||+|.+.. ...+.++..|+. ...+..+|.+||.++.|=+.+.+ |. ..+
T Consensus 103 ~~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i 163 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RC-QRI 163 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cc-eee
Confidence 2 3467999999999754 456888888875 34567788888999888777766 66 467
Q ss_pred ccCCCCHHHHHHHHH
Q 042193 627 YIPLPDEASRLQIFK 641 (784)
Q Consensus 627 ~~~~p~~~~r~~il~ 641 (784)
.|++|+........+
T Consensus 164 ~f~~~~~~~~i~~~e 178 (325)
T COG0470 164 RFKPPSRLEAIAWLE 178 (325)
T ss_pred ecCCchHHHHHHHhh
Confidence 787766555444333
No 316
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.76 E-value=9.9e-08 Score=110.67 Aligned_cols=131 Identities=23% Similarity=0.304 Sum_probs=89.7
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecccchhcccCcch--HHHH---H-----HHHHhhhCCCeEEEEecc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGPELLTMWFGESE--ANVR---E-----IFDKARQSAPCVLFFDEL 562 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~~~--~~i~---~-----~f~~a~~~~p~vl~iDEi 562 (784)
.++||.|+||||||++|++++..+.. +|+.+.........+|... ..+. . ++..|. -.++|+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~---~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAP---RGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCC---CCcEeccch
Confidence 45999999999999999999998764 5887764322222233210 0000 0 011121 149999999
Q ss_pred chhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCC---CCCccccCCCCccccccc
Q 042193 563 DSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---VIDPALLRPGRLDQLIYI 628 (784)
Q Consensus 563 d~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~ 628 (784)
+.+. ..+++.|+..|+.-. ...++.||+|+|..+ .+.++++. ||+.+|.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9864 457788888887432 123578899999875 68899998 99988776
Q ss_pred C-CCCHHHHHHHHHHHh
Q 042193 629 P-LPDEASRLQIFKACL 644 (784)
Q Consensus 629 ~-~p~~~~r~~il~~~~ 644 (784)
. +|+.++|.+|++..+
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 6 457788999998765
No 317
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.76 E-value=7.6e-08 Score=93.82 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=83.4
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CC----cEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-GA----FFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-~~----~~~~v~ 253 (784)
+++.+..+.||+|.++.++++.-+..- ..-.+++|.|||||||||-+.++|+++ |. .++.+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 356777789999999999988755432 123479999999999999999999986 32 246666
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHhc---CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc
Q 042193 254 GPEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT 330 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at 330 (784)
+++-.+- .-...+++..-|.--.. .-.|+++||+|++... ....|...|+-+....++.+ +|
T Consensus 86 ASdeRGI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRFal--aC 150 (333)
T KOG0991|consen 86 ASDERGI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRFAL--AC 150 (333)
T ss_pred Ccccccc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchhhh--hh
Confidence 6553221 11222333322222122 2259999999988522 22344455655555444444 67
Q ss_pred CCCCCCCHHHHh
Q 042193 331 NRPNSIDPALRR 342 (784)
Q Consensus 331 n~~~~ld~al~r 342 (784)
|..+.+-+.+.+
T Consensus 151 N~s~KIiEPIQS 162 (333)
T KOG0991|consen 151 NQSEKIIEPIQS 162 (333)
T ss_pred cchhhhhhhHHh
Confidence 776666444443
No 318
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=5.8e-07 Score=93.17 Aligned_cols=61 Identities=38% Similarity=0.630 Sum_probs=43.9
Q ss_pred ccccChHHHHHHH---HHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhhh
Q 042193 187 DDVGGVRKQMAQI---RELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIM 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l---~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~--~~~~~v~~~~l~ 258 (784)
+.++|+.++-+.. .+++.. |-..+++||+.||||||||.||-.+|++|| .+|+.++++++.
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 4577777665542 333322 334688999999999999999999999997 467777765443
No 319
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=3.9e-08 Score=106.31 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=101.2
Q ss_pred ccccccc-hhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc---------------
Q 042193 458 SWEDIGG-LETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 521 (784)
Q Consensus 458 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~--------------- 521 (784)
.|+.|.| ++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777766 88888888776542 2345668999999999999999999975321
Q ss_pred ---------EEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 522 ---------FVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 522 ---------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
+..+... +.. -.-..++.+.+... .....|++|||+|.+. ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 2222111 000 11234555544432 2345699999998863 34668999
Q ss_pred HHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHH
Q 042193 589 TEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 589 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~ 642 (784)
..|+..+ ..+++|.+|+.++.|-|.+.+ |. .+++|++|+.++..++++.
T Consensus 132 K~LEEPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9999643 355555677778888888887 77 4789999998887777753
No 320
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.75 E-value=8e-08 Score=110.05 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=96.3
Q ss_pred cccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc-EEEE---ecccchhc---
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FVSV---KGPELLTM--- 533 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-~i~v---~~~~l~~~--- 533 (784)
.|.|.+.+|..+.-.+..... +..-....+....++||+|+||||||++|++++..+... |... ++..+...
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 355677777666443322110 000111122333469999999999999999999987543 2221 11112110
Q ss_pred --ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcE
Q 042193 534 --WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTV 600 (784)
Q Consensus 534 --~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v 600 (784)
..|+..-..+.++ .|. ..++++||++.+. ...++.|+..|+.-. -..+.
T Consensus 283 ~~~~g~~~~~~G~l~-~A~---~Gil~iDEi~~l~--------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 283 DPETREFTLEGGALV-LAD---NGVCCIDEFDKMD--------------DSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred ccCcceEEecCccEE-ecC---CCEEEEechhhCC--------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 0111000001111 222 2499999999864 335566666675421 12467
Q ss_pred EEEEecCCCC-------------CCCccccCCCCccccc-ccCCCCHHHHHHHHHHHhc
Q 042193 601 FIIGATNRPD-------------VIDPALLRPGRLDQLI-YIPLPDEASRLQIFKACLR 645 (784)
Q Consensus 601 ~vi~aTn~~~-------------~ld~allr~gRf~~~i-~~~~p~~~~r~~il~~~~~ 645 (784)
.||||+|..+ .|++++++ |||.+. ....|+.+...+|.+..++
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 8999999752 58999999 999765 5578999999999887653
No 321
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.75 E-value=1.6e-07 Score=93.46 Aligned_cols=142 Identities=17% Similarity=0.263 Sum_probs=91.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 276 (784)
+..+||+||+|+|||++++.+++.+... +..+... .. .-.-..++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4579999999999999999999987432 1111110 00 01123455555554
Q ss_pred Hh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 277 EK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 277 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
.. ....++++||+|.+... ..+.|+..++... ....+|.+|+.+..+.+++++ |. ..+.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 33 34579999999888432 2456777777633 244555556677889999987 55 46899
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCC
Q 042193 353 GVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHG 388 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g 388 (784)
..|+.++..+++... + +. +..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g--i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--IS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C--CC-HHHHHHHHHHcCC
Confidence 999999988888765 1 22 2335555555554
No 322
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.71 E-value=1.1e-07 Score=102.01 Aligned_cols=159 Identities=23% Similarity=0.357 Sum_probs=99.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-------EE-EEec
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF-------FF-LING 254 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~-------~~-~v~~ 254 (784)
-..|.+|.|+++.+..|.-....| ...+|||.|++||||||++|.+++.+... |. .-+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 457899999999887765443321 12479999999999999999998876421 11 0000
Q ss_pred hh-----hhhhh-------------------cchhHHH------HHHHHHHHH---------hcCCeEEEeehhhhhcCC
Q 042193 255 PE-----IMSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 255 ~~-----l~~~~-------------------~g~~~~~------l~~vf~~a~---------~~~p~il~iDEid~l~~~ 295 (784)
++ ..... .+.++.. +...|.... .....+||+||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 00 00000 0111221 111222111 112369999999988532
Q ss_pred CCCCchHHHHHHHHHHHHHhhcc-----------ccCCcEEEEEEcCCCC-CCCHHHHhcCCcceEEEeCCCC-HHHHHH
Q 042193 296 REKTNGEVERRIVSQLLTLMDGL-----------KSRAHVVVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLE 362 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~vivI~atn~~~-~ld~al~r~~rf~~~i~i~~p~-~~~R~~ 362 (784)
+.+.|+..|+.- ....+++++++.|..+ .+.+++.. ||...+.+..|. .+.+.+
T Consensus 160 -----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 160 -----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred -----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 445566666431 1234788888888665 58888887 999999999997 589999
Q ss_pred HHHHH
Q 042193 363 VFRIH 367 (784)
Q Consensus 363 il~~~ 367 (784)
|++..
T Consensus 227 il~~~ 231 (350)
T CHL00081 227 IVEQR 231 (350)
T ss_pred HHHhh
Confidence 99764
No 323
>PRK08116 hypothetical protein; Validated
Probab=98.71 E-value=2.4e-08 Score=104.44 Aligned_cols=129 Identities=24% Similarity=0.267 Sum_probs=78.4
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhccc----CcchHHHHHHHHHhhhCCCeEEEEeccchhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 566 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~----g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~ 566 (784)
..|++|+|++|||||+||.++++++ +.+++.++.++++..+. +.+......+++.... ..+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 4579999999999999999999975 67888888888765432 1111222234443332 3599999996421
Q ss_pred hhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC-CC----CCccccCCCCc---ccccccCCCCHHHHHH
Q 042193 567 TQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP-DV----IDPALLRPGRL---DQLIYIPLPDEASRLQ 638 (784)
Q Consensus 567 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~-~~----ld~allr~gRf---~~~i~~~~p~~~~r~~ 638 (784)
..+..+..|...++....... .+|.|||.+ +. ++.++.+ |+ -..|.++.||. |..
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 123445666666665433333 355566654 33 4666665 64 23455556654 444
Q ss_pred HHH
Q 042193 639 IFK 641 (784)
Q Consensus 639 il~ 641 (784)
+.+
T Consensus 255 ~~~ 257 (268)
T PRK08116 255 IAK 257 (268)
T ss_pred HHH
Confidence 443
No 324
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.8e-07 Score=96.18 Aligned_cols=82 Identities=24% Similarity=0.483 Sum_probs=60.9
Q ss_pred eEEEeehhhhhcCCCCCCchHH-HHHHHHHHHHHhhcccc--------CCcEEEEEEc----CCCCCCCHHHHhcCCcce
Q 042193 282 SIIFIDEIDSIAPKREKTNGEV-ERRIVSQLLTLMDGLKS--------RAHVVVMGAT----NRPNSIDPALRRFGRFDR 348 (784)
Q Consensus 282 ~il~iDEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~~--------~~~vivI~at----n~~~~ld~al~r~~rf~~ 348 (784)
.|+||||||.++.+.+.+.+++ ..-+...|+.++++..- ..++++|++- ..|.++-|.|+. ||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 6999999999998876443233 34455677777776432 2467788543 367888899875 9999
Q ss_pred EEEeCCCCHHHHHHHHH
Q 042193 349 EIDIGVPDEVGRLEVFR 365 (784)
Q Consensus 349 ~i~i~~p~~~~R~~il~ 365 (784)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998888875
No 325
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.70 E-value=1.5e-07 Score=101.08 Aligned_cols=157 Identities=22% Similarity=0.310 Sum_probs=95.2
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe-----------
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLIN----------- 253 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~----------- 253 (784)
.|..|.|+++.+..+.-..-.| ...+++|.|+||+||||+++++++.+......++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999887664322111 1357999999999999999999988742111111
Q ss_pred -----chhh----------------hhhhcchhHHHH------HHH-------HHH--HHhcCCeEEEeehhhhhcCCCC
Q 042193 254 -----GPEI----------------MSKLAGESESNL------RKA-------FEE--AEKNAPSIIFIDEIDSIAPKRE 297 (784)
Q Consensus 254 -----~~~l----------------~~~~~g~~~~~l------~~v-------f~~--a~~~~p~il~iDEid~l~~~~~ 297 (784)
|... ..--.+.++..+ ... |+. .......++|+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 1100 000000011110 110 110 0011236999999998742
Q ss_pred CCchHHHHHHHHHHHHHhhccc-----------cCCcEEEEEEcCCCC-CCCHHHHhcCCcceEEEeCCCCH-HHHHHHH
Q 042193 298 KTNGEVERRIVSQLLTLMDGLK-----------SRAHVVVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVF 364 (784)
Q Consensus 298 ~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-~ld~al~r~~rf~~~i~i~~p~~-~~R~~il 364 (784)
.+...|+..|+.-. ...++++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 34556666664311 124688888888655 68888887 8999999998876 8888998
Q ss_pred HHH
Q 042193 365 RIH 367 (784)
Q Consensus 365 ~~~ 367 (784)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 754
No 326
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.69 E-value=2.5e-07 Score=98.72 Aligned_cols=64 Identities=28% Similarity=0.348 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhCCC----C-----CCcEEEEEecCCCC-------CCCccccCCCCcccccccCCC-CHHHHHHHHHHH
Q 042193 581 DRVLNQLLTEMDGMN----A-----KKTVFIIGATNRPD-------VIDPALLRPGRLDQLIYIPLP-DEASRLQIFKAC 643 (784)
Q Consensus 581 ~~~l~~ll~~ld~~~----~-----~~~v~vi~aTn~~~-------~ld~allr~gRf~~~i~~~~p-~~~~r~~il~~~ 643 (784)
.++++.||+.++... . .-..+||++||..+ ...+|+++ |+. .+++|.| +..+-.+|.+..
T Consensus 250 ~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~ 326 (361)
T smart00763 250 IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKL 326 (361)
T ss_pred HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHH
Confidence 568889999888432 1 12468999999873 55789999 998 8899977 677888999888
Q ss_pred hccC
Q 042193 644 LRKS 647 (784)
Q Consensus 644 ~~~~ 647 (784)
+...
T Consensus 327 ~~~s 330 (361)
T smart00763 327 LRNS 330 (361)
T ss_pred hccC
Confidence 8653
No 327
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.69 E-value=1.4e-07 Score=101.89 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=100.3
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc-----cCcch-------HHHHHHHHHhhhCCCeEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 558 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~~~-------~~i~~~f~~a~~~~p~vl~ 558 (784)
...|||+|++||||+++|+++...+ +.+|+.+++..+.... +|... ..-.-.|..|. ..+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 3459999999999999999998765 3799999997653211 11100 00011244443 34999
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC-------CCCCccccCCCCc
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------DVIDPALLRPGRL 622 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allr~gRf 622 (784)
||||+.|. ..++..|+..++... ...++-+|++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATAS--------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCC--------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 99999874 346677777775432 12357888888864 233455554 66
Q ss_pred c-cccccCCCC--HHHHHHHHHHHhc----cCCCC-----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 623 D-QLIYIPLPD--EASRLQIFKACLR----KSPIS-----PDVDLSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 623 ~-~~i~~~~p~--~~~r~~il~~~~~----~~~~~-----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
. ..|.+|+.. .++...+++.++. +.+.. .+.-+..|..+.---+-++|++++..|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3 345555543 2333344444432 22211 1122455555543346689999998888765
No 328
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=3.3e-08 Score=108.41 Aligned_cols=194 Identities=25% Similarity=0.376 Sum_probs=119.0
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccch-
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELL- 531 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~- 531 (784)
..++++|.|-......+.+.... .-.....+|+.|.+||||..+|+++-+.+ +.||+.+||.-+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 44677777776665554443321 22345569999999999999999999877 4799999997552
Q ss_pred ------------hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----
Q 042193 532 ------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---- 595 (784)
Q Consensus 532 ------------~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---- 595 (784)
+.|.|....--.-+|+.|... -||+|||..+. ..++..||+.|..-.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 122333322123467777665 89999997653 457788888876421
Q ss_pred -----CCCcEEEEEecCCCCCCCccccCCCCcc-------cccccCCCCHHHHH--------HHHHHHhccCC-----CC
Q 042193 596 -----AKKTVFIIGATNRPDVIDPALLRPGRLD-------QLIYIPLPDEASRL--------QIFKACLRKSP-----IS 650 (784)
Q Consensus 596 -----~~~~v~vi~aTn~~~~ld~allr~gRf~-------~~i~~~~p~~~~r~--------~il~~~~~~~~-----~~ 650 (784)
-.-+|-||||||+. +..++-. |||- .++.+..|...+|. .+++.+.++++ ++
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 12368899999984 3233322 4443 34555555555543 23333333332 22
Q ss_pred CccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 651 PDVDLSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 651 ~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
++ -+..|.++.---+-++|+|++..+...+
T Consensus 450 ~~-a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 450 PD-ALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HH-HHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 22 2455555443335699999999988633
No 329
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=3.8e-07 Score=105.27 Aligned_cols=190 Identities=12% Similarity=0.147 Sum_probs=106.6
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE-Eechh-
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL-INGPE- 256 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~-v~~~~- 256 (784)
+++.+..++++.|+++.++.++.++.-. .++..+++.++|+|||||||||+++.+|++++..+.. ++...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4677888999999999999988876531 1123455679999999999999999999988754322 11110
Q ss_pred --hhhh------------hcchhHHHHHHHHHHHHh----------cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHH
Q 042193 257 --IMSK------------LAGESESNLRKAFEEAEK----------NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLL 312 (784)
Q Consensus 257 --l~~~------------~~g~~~~~l~~vf~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 312 (784)
.... ........++.++..+.. ....||||||++.+.... ......++
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lL 219 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEIL 219 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHH
Confidence 0000 001122334444444431 245799999999776431 11222333
Q ss_pred H-HhhccccCCcEEEEEEcC-CCC--------------CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC--C--
Q 042193 313 T-LMDGLKSRAHVVVMGATN-RPN--------------SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM--K-- 372 (784)
Q Consensus 313 ~-~ld~~~~~~~vivI~atn-~~~--------------~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~--~-- 372 (784)
. ... ....+.+|++++ .+. .+.++++...|. ..|.|.+.....-...|+..+... .
T Consensus 220 r~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 3 221 122333333333 121 123566542344 368999999888665555444321 1
Q ss_pred ----cccchhhhHHHHhcCC
Q 042193 373 ----LAEDVDLERVARDTHG 388 (784)
Q Consensus 373 ----~~~~~~l~~la~~t~g 388 (784)
+.....+..++....|
T Consensus 296 ~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cccccCCHHHHHHHHHhCCC
Confidence 1122345666665555
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=8.3e-08 Score=113.17 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|+||+|||||||++.|++.+
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889999999999999999999975
No 331
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.65 E-value=8.2e-07 Score=92.10 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=114.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEechh-
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPE- 256 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~~~v~~~~- 256 (784)
+...|+....+-+..+..+ +.+|.. ....++||+|++|.|||++++......+ .+++.+..+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~L-l~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEEL-LEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred CCeecCHHHHHHHHHHHHH-HhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 3456666665544443333 333321 2245799999999999999999987653 2445554421
Q ss_pred -----hhh--------hh--cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 042193 257 -----IMS--------KL--AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSR 321 (784)
Q Consensus 257 -----l~~--------~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 321 (784)
+.. .+ ..........+..-.+...+.+|+|||+|.++.... ...+. +++.+..+...
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~----~Ln~LK~L~Ne 178 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQRE----FLNALKFLGNE 178 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHH----HHHHHHHHhhc
Confidence 111 00 011222233444555667788999999999864321 11222 33333333333
Q ss_pred --CcEEEEEEcCCCCC--CCHHHHhcCCcceEEEeCCCCH-HHHHHHHHHHHcCCCccc------chhhhHHHHhcCCCc
Q 042193 322 --AHVVVMGATNRPNS--IDPALRRFGRFDREIDIGVPDE-VGRLEVFRIHTKNMKLAE------DVDLERVARDTHGYV 390 (784)
Q Consensus 322 --~~vivI~atn~~~~--ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~~~~~~~~~------~~~l~~la~~t~g~~ 390 (784)
-.++.+|+..-... -|+.+.+ ||.. +.++.... ++-..++..+...+++.. ..-...+-..+.|..
T Consensus 179 L~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 179 LQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred cCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 34555565432222 2677776 8865 34443222 233445665555555432 222356677888877
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 042193 391 GADLAALCTEAALQCIREKM 410 (784)
Q Consensus 391 ~~dl~~l~~~a~~~~~~~~~ 410 (784)
| ++..++..|+..+++...
T Consensus 256 G-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 256 G-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred H-HHHHHHHHHHHHHHhcCC
Confidence 6 678888899888887654
No 332
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.65 E-value=3.2e-07 Score=92.33 Aligned_cols=108 Identities=28% Similarity=0.304 Sum_probs=64.2
Q ss_pred CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC-------------CCCCCccccCCC
Q 042193 554 PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR-------------PDVIDPALLRPG 620 (784)
Q Consensus 554 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~-------------~~~ld~allr~g 620 (784)
|.|+||||++.|-- +.+..|-+.++. .-.-+||.|||+ |.-+.+.++.
T Consensus 297 PGVLFIDEVhMLDi--------------EcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI--------------ECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhhhh--------------HHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 77899999887631 233444444443 222366777776 3345667776
Q ss_pred CcccccccCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 621 RLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 621 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
|+ .+|..-+++.++.++|++...+..++.-+.+ +..|++....-|-+-...++.-|...|
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 66 3566667888999999999988777654333 556665544334333333444333333
No 333
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.5e-08 Score=97.78 Aligned_cols=98 Identities=33% Similarity=0.522 Sum_probs=72.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcchhHH-HHHHHHHHHH----hcCCeEEEeehhhhhcC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGESES-NLRKAFEEAE----KNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g~~~~-~l~~vf~~a~----~~~p~il~iDEid~l~~ 294 (784)
..+|||+||+|||||.||+.||+.++.+|..-++..+.. .|+|+--. -+..++|.+. .....|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 347999999999999999999999999998888877764 57776544 4455666542 23457999999999997
Q ss_pred CCCCCc---hHHHHHHHHHHHHHhhcc
Q 042193 295 KREKTN---GEVERRIVSQLLTLMDGL 318 (784)
Q Consensus 295 ~~~~~~---~~~~~~v~~~Ll~~ld~~ 318 (784)
+...++ +-...-+...|+..+++.
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 754332 112345667788888764
No 334
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=8e-08 Score=110.73 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=33.8
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l 530 (784)
.+..+++....| +.|.||+|+|||||++++++... .+-+.+++.++
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV 327 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC
Confidence 445556665555 88999999999999999998753 45566665443
No 335
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.64 E-value=3.1e-06 Score=96.56 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=55.4
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhccc------C----------------------cc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWF------G----------------------ES 538 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~------g----------------------~~ 538 (784)
|+.+...+|+.||||+|||+|+..++... +-+.+++...+-...+. | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 66666669999999999999999888754 45667776554321110 0 01
Q ss_pred hHHHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 539 EANVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 539 ~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
+..+..+.+......|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45566777788888899999999987753
No 336
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.1e-06 Score=94.78 Aligned_cols=169 Identities=12% Similarity=0.182 Sum_probs=107.5
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--------EEEEechh
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF--------FFLINGPE 256 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--------~~~v~~~~ 256 (784)
+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+.+++.+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 4788999999999988876431 224468999999999999999999986332 12222100
Q ss_pred hhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 257 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 257 l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
+. .-.-..++.+.+.+ ......|++||++|.+.. ...+.|+..++.. ...+++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEep--p~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEP--PKGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCC--CCCeEEEEEeCC
Confidence 00 01123455555433 233456999999987732 2346788888753 334455555577
Q ss_pred CCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCC
Q 042193 333 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHG 388 (784)
Q Consensus 333 ~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g 388 (784)
++.+-+.+++ |. ..+++..|+.++-...+....... +...+..++..+.|
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCC
Confidence 8899999987 54 468899999888777776543321 12224445555554
No 337
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=3.6e-07 Score=105.43 Aligned_cols=200 Identities=14% Similarity=0.191 Sum_probs=110.7
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEE-Eeccc-----
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVS-VKGPE----- 529 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~-v~~~~----- 529 (784)
...++++.+.++..+.+...+.... ++..+..-++|+||||||||++++++|++++..++. ++...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 4456788888877777766543210 122333449999999999999999999988754433 11100
Q ss_pred --------c---hhcccCcchHHHHHHHHHhhh----------CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 530 --------L---LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 530 --------l---~~~~~g~~~~~i~~~f~~a~~----------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
+ +..+ .......+.+...+.. ....|||||||+.+... ....+..+|
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lL 219 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEIL 219 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHH
Confidence 0 0011 1112233444444431 24569999999987642 122455555
Q ss_pred H-HhhCCCCCCcEEEEEecCCCC--------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC--C--
Q 042193 589 T-EMDGMNAKKTVFIIGATNRPD--------------VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--I-- 649 (784)
Q Consensus 589 ~-~ld~~~~~~~v~vi~aTn~~~--------------~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~--~-- 649 (784)
. .... ...-.+|+++|..|. .|.++++..-|. .+|.|++.........|+..++... .
T Consensus 220 r~~~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 220 RWKYVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHhhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 5 2221 222223333332221 133667631244 3789999999997777777665421 1
Q ss_pred ----CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 650 ----SPDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 650 ----~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
.....+..|+....| |++.++...-..+.
T Consensus 297 ~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~ 329 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSS 329 (637)
T ss_pred ccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHh
Confidence 112245666665444 88777665554443
No 338
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.61 E-value=1.4e-07 Score=107.35 Aligned_cols=192 Identities=22% Similarity=0.344 Sum_probs=110.3
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHH-----------hCCcEEEEe
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFVSVK 526 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~-----------~~~~~i~v~ 526 (784)
.++++.|.....+.+.+.+... . .....+||+|++||||+++|+++-.. .+.+|+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~----------A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY----------A-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4667777777666665554311 1 12345999999999999999999887 357999999
Q ss_pred cccchhc-----ccCcchH--------HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhC
Q 042193 527 GPELLTM-----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDG 593 (784)
Q Consensus 527 ~~~l~~~-----~~g~~~~--------~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 593 (784)
+..+... .+|..+. .-.-+|+.|.. ..||||||+.+. ..++..|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP--------------LPLQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC--------------HHHHHHHHhhhhc
Confidence 9876321 1121100 01124555543 389999999874 3456777777764
Q ss_pred CC-----C----CCcEEEEEecCCCCCCCccccCCCCcc-------cccccCCCCHHHHH----HHHHHHhcc----CCC
Q 042193 594 MN-----A----KKTVFIIGATNRPDVIDPALLRPGRLD-------QLIYIPLPDEASRL----QIFKACLRK----SPI 649 (784)
Q Consensus 594 ~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~-------~~i~~~~p~~~~r~----~il~~~~~~----~~~ 649 (784)
.. + .-++-||++||.. +...+ ..|+|. ..+.+..|...+|. .+++.++++ .+.
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 21 1 1245788888874 22222 123333 13445555555543 344445443 222
Q ss_pred CCccC-H-------HHHHHHcCCCCHHHHHHHHHHHHHH
Q 042193 650 SPDVD-L-------SALARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 650 ~~~~~-~-------~~la~~~~g~sg~di~~l~~~a~~~ 680 (784)
.-..+ + ..|..+.---+-++|++++..++..
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 21111 1 2333333223568999999988864
No 339
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.7e-06 Score=94.41 Aligned_cols=179 Identities=16% Similarity=0.193 Sum_probs=113.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE-----------
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFF----------- 250 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~----------- 250 (784)
.+-.+++|.|++..++.+.+.+... ..+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4456788999999999998877541 22446999999999999999999998732110
Q ss_pred --EE--ec-----------hhhhhh-----hcc------hhHHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCc
Q 042193 251 --LI--NG-----------PEIMSK-----LAG------ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTN 300 (784)
Q Consensus 251 --~v--~~-----------~~l~~~-----~~g------~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~ 300 (784)
.+ .| +++.-- ..+ -.-..++.+.+.. ....+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 00 01 011000 000 0123345544433 234678999999997742
Q ss_pred hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhh
Q 042193 301 GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLE 380 (784)
Q Consensus 301 ~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~ 380 (784)
...+.|+..++.. ....++|.+|+.++.+.+.+++ |. ..+.++.|+.++-.++|...... ..+..+.
T Consensus 156 -----~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 156 -----NAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred -----HHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 3455677777653 2355666688888888888876 55 45899999999888888764321 1111224
Q ss_pred HHHHhcCCCcH
Q 042193 381 RVARDTHGYVG 391 (784)
Q Consensus 381 ~la~~t~g~~~ 391 (784)
.++..+.|-.+
T Consensus 223 ~l~~~s~Gsp~ 233 (365)
T PRK07471 223 ALAALAEGSVG 233 (365)
T ss_pred HHHHHcCCCHH
Confidence 55666666443
No 340
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.4e-06 Score=93.58 Aligned_cols=181 Identities=25% Similarity=0.330 Sum_probs=118.6
Q ss_pred cCCCceeEEEcCCCCChhHHHHHHHHHh----CC-cEEEEecccch----------hcc----c-CcchHHHHHHHHHhh
Q 042193 491 LSPSKGVLFYGPPGCGKTLLAKAIANEC----QA-NFVSVKGPELL----------TMW----F-GESEANVREIFDKAR 550 (784)
Q Consensus 491 ~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~-~~i~v~~~~l~----------~~~----~-g~~~~~i~~~f~~a~ 550 (784)
.+.+.++.+.|-||||||.+..-+-... .. ..+++++..+. +.+ + +..+......|+.-.
T Consensus 172 ~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~ 251 (529)
T KOG2227|consen 172 LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT 251 (529)
T ss_pred cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3445669999999999999888665433 22 45778877542 111 1 112333344454433
Q ss_pred hC--CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccC----CCCccc
Q 042193 551 QS--APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLR----PGRLDQ 624 (784)
Q Consensus 551 ~~--~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr----~gRf~~ 624 (784)
.+ .+-++++||+|.|..++ ..++.++ -++..+ ...++++||..|..+.-|-.|.| .+--..
T Consensus 252 ~q~k~~~llVlDEmD~L~tr~-----------~~vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~ 318 (529)
T KOG2227|consen 252 KQSKFMLLLVLDEMDHLITRS-----------QTVLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPK 318 (529)
T ss_pred hcccceEEEEechhhHHhhcc-----------cceeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCc
Confidence 22 36799999999998532 1222222 223333 35678999999998877765543 223457
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCcc--CHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHH
Q 042193 625 LIYIPLPDEASRLQIFKACLRKSPISPDV--DLSALARYTHGFSGADITE---ICQRACKYAIREN 685 (784)
Q Consensus 625 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~sg~di~~---l~~~a~~~a~~~~ 685 (784)
.+.|++|+.++..+||+..+......... -++..|+...|.|| |++. +|+.|...|..+.
T Consensus 319 ~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 319 LLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred eeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999877654333 37778888899998 6654 6777776665544
No 341
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.60 E-value=4.1e-07 Score=100.44 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=75.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEec-----hhhhhhhcchhHHHHHHHHHHHHhc---CCeEEEeeh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGA--FFFLING-----PEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDE 288 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~-----~~l~~~~~g~~~~~l~~vf~~a~~~---~p~il~iDE 288 (784)
..+.+|||.||||||||++|++++...+. +|..+.+ .++++.... ....-...|...... ...++|+||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i-~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSI-QALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHH-hhhhhcCchhhhcCCccccccEEeecc
Confidence 34678999999999999999999997653 3333322 233221100 000001112211111 234899999
Q ss_pred hhhhcCCCCCCchHHHHHHHHHHHHHhhccc--------cCCcEEEEEEcCCCCC---CCHHHHhcCCcceEEEeCCCCH
Q 042193 289 IDSIAPKREKTNGEVERRIVSQLLTLMDGLK--------SRAHVVVMGATNRPNS---IDPALRRFGRFDREIDIGVPDE 357 (784)
Q Consensus 289 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~vivI~atn~~~~---ld~al~r~~rf~~~i~i~~p~~ 357 (784)
|..+. ....+.|+..|..-. .-+..++++|||.... ..+++.. ||...+.+++|+.
T Consensus 116 I~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 116 IWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred cccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 97443 335567777773211 1122344455564322 2235554 8888899999974
Q ss_pred -HHHHHHHHHH
Q 042193 358 -VGRLEVFRIH 367 (784)
Q Consensus 358 -~~R~~il~~~ 367 (784)
+.-.+++...
T Consensus 183 ~~~e~~lL~~~ 193 (498)
T PRK13531 183 KANFRSMLTSQ 193 (498)
T ss_pred hHHHHHHHHcc
Confidence 5557777653
No 342
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.9e-07 Score=100.25 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=93.2
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCCc-------------------------EEEEecccch---------------
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FVSVKGPELL--------------- 531 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-------------------------~i~v~~~~l~--------------- 531 (784)
+.+.++||+||+|+||+++|+++|..+.+. +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 566789999999999999999999875321 1122111000
Q ss_pred ---hc----c-cCcchHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCc
Q 042193 532 ---TM----W-FGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKT 599 (784)
Q Consensus 532 ---~~----~-~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 599 (784)
++ + -.-.-..|+.+.+.. ......|++||++|.+. ....|.||..|+. ...+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCcC
Confidence 00 0 001123555555443 33445699999999874 3456899999994 5567
Q ss_pred EEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 042193 600 VFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 600 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~ 643 (784)
+++|.+|+.|+.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8888899999999999988 88 58999999999888888653
No 343
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.59 E-value=1.8e-08 Score=90.75 Aligned_cols=104 Identities=29% Similarity=0.406 Sum_probs=56.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEech-hh-----hhhhcchhHH-----HHHHHHHHHHhcCCeEEEeehhhh
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLINGP-EI-----MSKLAGESES-----NLRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~-~l-----~~~~~g~~~~-----~l~~vf~~a~~~~p~il~iDEid~ 291 (784)
+|||.|+||+|||++++++|+.++..+..|.+. ++ .+...-.... .-.-+| ..++++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888763 22 2211100000 001122 25999999986
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCcEEEEEEcCCCC-----CCCHHHHhcCCc
Q 042193 292 IAPKREKTNGEVERRIVSQLLTLMDGLK---------SRAHVVVMGATNRPN-----SIDPALRRFGRF 346 (784)
Q Consensus 292 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivI~atn~~~-----~ld~al~r~~rf 346 (784)
..+ ++.+.|++.|..-+ -...+.||+|.|+.+ .+++++.. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 653 35667777775321 224688999999865 45666654 55
No 344
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.5e-07 Score=95.03 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=60.4
Q ss_pred eEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------CCCcEEEEEec----CCCCCCCccccCCCCc
Q 042193 555 CVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDVIDPALLRPGRL 622 (784)
Q Consensus 555 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf 622 (784)
.|+||||||.++.+.+.++. +-.-.-++..||-.++|-. ..+.+++||+- ..|+.|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 39999999999986542211 1223347788888888743 23567888875 46777777775 699
Q ss_pred ccccccCCCCHHHHHHHHH
Q 042193 623 DQLIYIPLPDEASRLQIFK 641 (784)
Q Consensus 623 ~~~i~~~~p~~~~r~~il~ 641 (784)
+-.+++...+.+.-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999988777774
No 345
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.58 E-value=2e-07 Score=100.67 Aligned_cols=169 Identities=23% Similarity=0.321 Sum_probs=99.1
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchh-----cccCcch-------HHHHHHHHHhhhCCCeEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLT-----MWFGESE-------ANVREIFDKARQSAPCVLF 558 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~-----~~~g~~~-------~~i~~~f~~a~~~~p~vl~ 558 (784)
...|+|+|++||||+++|+++...+. .+|+.+++..+.. .++|... ......|..+. ...||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccC---CCeEE
Confidence 34599999999999999999987653 6899999987531 1122110 00011234443 24899
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----C-----CCcEEEEEecCCC-------CCCCccccCCCCc
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----A-----KKTVFIIGATNRP-------DVIDPALLRPGRL 622 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----~-----~~~v~vi~aTn~~-------~~ld~allr~gRf 622 (784)
||||+.+.. .++..|+..++... . ..++-||++|+.. ..+.+.|.. ||
T Consensus 106 l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l 169 (326)
T PRK11608 106 LDELATAPM--------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL 169 (326)
T ss_pred eCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc
Confidence 999998753 35667777775422 0 1257788888764 234555665 66
Q ss_pred c-cccccCCCCH--HHHHHHHHHHh----ccCCCC--CccC---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 623 D-QLIYIPLPDE--ASRLQIFKACL----RKSPIS--PDVD---LSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 623 ~-~~i~~~~p~~--~~r~~il~~~~----~~~~~~--~~~~---~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
. ..|.+|+... ++...+++.++ ++.+.. ..++ +..|..+.---+-++|+++++.|+..+
T Consensus 170 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 170 AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 3 4555555422 23334444443 222211 1122 445555443345689999888887654
No 346
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.58 E-value=2.8e-07 Score=106.69 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=26.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|+||+|||||||+++|++.+
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456778889999999999999999999985
No 347
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.57 E-value=2.6e-07 Score=107.08 Aligned_cols=196 Identities=22% Similarity=0.288 Sum_probs=112.5
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM 533 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~ 533 (784)
..++++.|.....+.+.+.+... ......|+|+|++|||||++|+++...+ +.+|+.+++..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 34566777776666655544321 1224459999999999999999999875 469999999876321
Q ss_pred c-----cCcchH-------HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C
Q 042193 534 W-----FGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A 596 (784)
Q Consensus 534 ~-----~g~~~~-------~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~ 596 (784)
. +|.... ...-.|..+. ..+||||||+.+.. .++..|+..++... .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECCC
Confidence 1 111100 0000122222 35999999998743 46677777776432 1
Q ss_pred ----CCcEEEEEecCCC-------CCCCccccCCCCcc-cccccCCCC--HHHHHHHHHHHhcc----CCCCCcc---CH
Q 042193 597 ----KKTVFIIGATNRP-------DVIDPALLRPGRLD-QLIYIPLPD--EASRLQIFKACLRK----SPISPDV---DL 655 (784)
Q Consensus 597 ----~~~v~vi~aTn~~-------~~ld~allr~gRf~-~~i~~~~p~--~~~r~~il~~~~~~----~~~~~~~---~~ 655 (784)
..++-+|++|+.. ..+.+.|.. |+. ..|.+|+.. .++...+++.+++. .+..... -+
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1246788888764 122333333 443 345565543 23344455554432 2211112 25
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 656 SALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 656 ~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
..|..+.---+-++|+++++.|+..+-
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~~ 429 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLSR 429 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 556555433467899999998886553
No 348
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.57 E-value=1.1e-07 Score=102.89 Aligned_cols=194 Identities=24% Similarity=0.325 Sum_probs=119.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchh
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLT 532 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~ 532 (784)
......|+|......++.+.+..- ......|||.|.+||||..+|++|-..+ ..||+.+||+-+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 344566777777777666655421 1234459999999999999999999887 47999999976631
Q ss_pred c-----cc--------CcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----
Q 042193 533 M-----WF--------GESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---- 595 (784)
Q Consensus 533 ~-----~~--------g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---- 595 (784)
. .+ |....+ +--|+.|... -+|+|||..+. -.++..||..+...+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r-~GrFElAdGG---TLFLDEIGelP--------------L~lQaKLLRvLQegEieRv 349 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTR-RGRFELADGG---TLFLDEIGELP--------------LALQAKLLRVLQEGEIERV 349 (550)
T ss_pred HHHHHHHhcccccccccchhcc-CcceeecCCC---eEechhhccCC--------------HHHHHHHHHHHhhcceeec
Confidence 1 11 111111 1134555444 89999997653 446677887776432
Q ss_pred -C----CCcEEEEEecCCCCCCCccccCCCCcc-------cccccCCCCHHHHH--------HHHHHHhccCCCCC-ccC
Q 042193 596 -A----KKTVFIIGATNRPDVIDPALLRPGRLD-------QLIYIPLPDEASRL--------QIFKACLRKSPISP-DVD 654 (784)
Q Consensus 596 -~----~~~v~vi~aTn~~~~ld~allr~gRf~-------~~i~~~~p~~~~r~--------~il~~~~~~~~~~~-~~~ 654 (784)
+ .-.|-||||||+ .|..++.. |+|- .++.+..|-..+|. .+++.+.++.+... ...
T Consensus 350 G~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 350 GGDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred CCCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 1 125889999998 55555554 5654 23334445444442 33444444455421 112
Q ss_pred ---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 655 ---LSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 655 ---~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
++.|.++.---+-+++++++..|+..|
T Consensus 427 ~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 444444433335699999999999988
No 349
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.57 E-value=5.7e-07 Score=101.20 Aligned_cols=122 Identities=27% Similarity=0.409 Sum_probs=77.5
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecccchh--------------c------------ccCcchHHHHHH
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGPELLT--------------M------------WFGESEANVREI 545 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~~l~~--------------~------------~~g~~~~~i~~~ 545 (784)
...++|+||||||||++++.+++.+.. .-..+....+.+ . .+|.....-.-.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 345999999999999999999986531 111111111110 0 112111011124
Q ss_pred HHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCC----
Q 042193 546 FDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---- 610 (784)
Q Consensus 546 f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~---- 610 (784)
+..|... ++|+||++.+ ...+++.|++.|+.-. ...++.+|+|+|...
T Consensus 290 l~~A~gG---vLfLDEi~e~--------------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 290 ISLAHNG---VLFLDELPEF--------------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhhccCC---EEecCCchhC--------------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 5555554 9999999764 2457778887775422 124689999999752
Q ss_pred -----------------CCCccccCCCCcccccccCCCCHH
Q 042193 611 -----------------VIDPALLRPGRLDQLIYIPLPDEA 634 (784)
Q Consensus 611 -----------------~ld~allr~gRf~~~i~~~~p~~~ 634 (784)
.|..+++. |||..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36778998 99999999988644
No 350
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.56 E-value=2.5e-07 Score=107.32 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=33.4
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC-CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ-ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~-~~~i~v~~~~l 530 (784)
.++.+++....| +.|.||+|+|||||++++++... ..-+.+++.++
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i 349 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL 349 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEc
Confidence 455556666666 88999999999999999998752 34455555443
No 351
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.56 E-value=2e-07 Score=107.06 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567788999999999999999999998763
No 352
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.56 E-value=1.9e-07 Score=100.91 Aligned_cols=172 Identities=24% Similarity=0.297 Sum_probs=105.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh----CCcEEEEecccchhc-------------ccCcchHHHHHHHHHhhhCCCeEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC----QANFVSVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVL 557 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~----~~~~i~v~~~~l~~~-------------~~g~~~~~i~~~f~~a~~~~p~vl 557 (784)
..+|++|++||||+.+|++|...+ ..|||.+||..+... |.| ....-.-+|+.|... .|
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tL 177 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TL 177 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCCC---EE
Confidence 349999999999999999997543 569999999876422 233 122223466666655 99
Q ss_pred EEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC--CCCCc--cccCCCCccc
Q 042193 558 FFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP--DVIDP--ALLRPGRLDQ 624 (784)
Q Consensus 558 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~--~~ld~--allr~gRf~~ 624 (784)
|+|||+.+.. ..+..|++.||... -..+|-+|+|||-. +.+-. .+.+. |+..
T Consensus 178 fLDEI~~LP~--------------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~ 242 (403)
T COG1221 178 FLDEIHRLPP--------------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNIL 242 (403)
T ss_pred ehhhhhhCCH--------------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCc
Confidence 9999998754 35678888888632 13468888998852 22222 33331 5555
Q ss_pred ccccCCCCH--HHHHHHHHH----HhccCCCCCccC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 625 LIYIPLPDE--ASRLQIFKA----CLRKSPISPDVD----LSALARYTHGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 625 ~i~~~~p~~--~~r~~il~~----~~~~~~~~~~~~----~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
.|.+|+... +++..+.+. .+++.+.....+ +..|-.+.---+-++++++++.++..+-...
T Consensus 243 ~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 243 TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 666665533 223333333 334444443332 2233333222255899999999998875443
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.56 E-value=1.8e-07 Score=110.50 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|+||+|||||||+++|++.+.
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4567788899999999999999999999753
No 354
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.55 E-value=1.6e-07 Score=103.22 Aligned_cols=197 Identities=23% Similarity=0.343 Sum_probs=118.6
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchhc--
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLTM-- 533 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~~-- 533 (784)
+.++.|.....+++.+.+..- -.....||++|++||||-++|++|-..+. .||+.+||..+-..
T Consensus 140 ~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred cCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 345666666666665554320 12234599999999999999999998774 69999999766321
Q ss_pred ---cc--------CcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C-
Q 042193 534 ---WF--------GESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A- 596 (784)
Q Consensus 534 ---~~--------g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~- 596 (784)
.+ |...++.+ .|+.|... .||+|||..+. ..++..||..+..-. +
T Consensus 209 ESELFGhekGAFTGA~~~r~G-~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIG-RFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHhhcccccCcCCcccccCc-ceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCCC
Confidence 11 22222221 56666554 99999998753 457778888877422 1
Q ss_pred ---CCcEEEEEecCCCCCCCccccCCCCcc-------cccccCCCCHHHHH--------HHHHHHhccCCCC-CccCHHH
Q 042193 597 ---KKTVFIIGATNRPDVIDPALLRPGRLD-------QLIYIPLPDEASRL--------QIFKACLRKSPIS-PDVDLSA 657 (784)
Q Consensus 597 ---~~~v~vi~aTn~~~~ld~allr~gRf~-------~~i~~~~p~~~~r~--------~il~~~~~~~~~~-~~~~~~~ 657 (784)
.-+|=||+|||+. |...+-. |||- .++.+..|...+|. .+++.+.+..+.. ....-+.
T Consensus 271 ~~i~vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 2357899999984 3332222 4443 35566666665554 3333333434322 2233333
Q ss_pred HHHH-cCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 042193 658 LARY-THGF--SGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 658 la~~-~~g~--sg~di~~l~~~a~~~a~~~~~~ 687 (784)
+... +..+ +-++|+|++..++..+-...+.
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~ 380 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSEGPEIE 380 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCCccccc
Confidence 3332 2334 4489999999998777654433
No 355
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.54 E-value=3.6e-07 Score=105.53 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.0
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
.++.+++....| +.|.||+|+|||||++++++... .+-+.+++.++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 355556666666 89999999999999999999753 34566665443
No 356
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.54 E-value=6.4e-07 Score=97.19 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=92.4
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------------------
Q 042193 189 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---------------------- 246 (784)
Q Consensus 189 i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---------------------- 246 (784)
+.|.+.....+.......- ..+..+||+||||+|||++|.++|+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred cccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 4555566565555443211 1122599999999999999999999986
Q ss_pred --CcEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 042193 247 --AFFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320 (784)
Q Consensus 247 --~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 320 (784)
..++.++.++..... .....++.+.+.... ...-+++|||+|.+.. ...+.++..++...
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~- 137 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP- 137 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC-
Confidence 356667665543321 123345555444322 3457999999998864 23456666666533
Q ss_pred CCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 042193 321 RAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVF 364 (784)
Q Consensus 321 ~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il 364 (784)
.+..+|.+||.+..+-+.+++ |. ..+.|.+|........+
T Consensus 138 -~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 138 -KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred -CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 456677788899988888887 54 33667665554443333
No 357
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.3e-06 Score=93.25 Aligned_cols=129 Identities=20% Similarity=0.314 Sum_probs=90.0
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC------------------------cEEEEecccchhcccCcchHHHHHHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFVSVKGPELLTMWFGESEANVREIFD 547 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~~~~~i~~~f~ 547 (784)
..+.++||+||.|+||+++|+++|..+-+ .+..+...+ ++.+ .-..+|.+-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34567999999999999999999987521 122222110 1111 2334555444
Q ss_pred ----HhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 042193 548 ----KARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLD 623 (784)
Q Consensus 548 ----~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 623 (784)
.+......|++||++|.+. ....|.||..|+. +..++++|.+|+.++.|-|.+++ |.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC- 158 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC- 158 (325)
T ss_pred HHhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-
Confidence 3444556799999999864 3456999999996 44566777788889999999887 77
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 042193 624 QLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 624 ~~i~~~~p~~~~r~~il~~~ 643 (784)
..+.|++|+.++..+.+...
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHH
Confidence 47789999988877777654
No 358
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.53 E-value=2.9e-07 Score=88.88 Aligned_cols=133 Identities=26% Similarity=0.363 Sum_probs=84.6
Q ss_pred chhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC-----------------------
Q 042193 464 GLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 520 (784)
Q Consensus 464 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------------- 520 (784)
|++.+.+.|...+.. -+.+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 456666666665542 244567999999999999999999997521
Q ss_pred cEEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC
Q 042193 521 NFVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA 596 (784)
Q Consensus 521 ~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 596 (784)
.+..++..+-.. .-.-..++.+.+.... ....|++|||+|.+. ....|.||..|+..
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEP-- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCC--
Confidence 233333222100 1123566666665543 346799999999864 45779999999964
Q ss_pred CCcEEEEEecCCCCCCCccccCCCCcccccccCC
Q 042193 597 KKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630 (784)
Q Consensus 597 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~ 630 (784)
..++++|.+|+.++.|-|.+++ |.- .+.|++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 3567777788888888888887 763 455544
No 359
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.6e-06 Score=90.79 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=100.9
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC------------------------cEEEEecccc-hhcccCcchHHHHHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFVSVKGPEL-LTMWFGESEANVREIF 546 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~i~v~~~~l-~~~~~g~~~~~i~~~f 546 (784)
+.+..+||+||+|+||+++|.++|..+-+ .+..+....- .+-.+.+....+..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 45567999999999999999999987521 1222221100 0001122222333344
Q ss_pred HHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCccccc
Q 042193 547 DKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLI 626 (784)
Q Consensus 547 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i 626 (784)
..+......|++||++|.+. ....|.||..|+. +..+.++|-+|+.|+.|-|.+++ |.. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 44555566799999999874 3456999999996 44567777788889999999987 886 67
Q ss_pred ccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHH
Q 042193 627 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGA 668 (784)
Q Consensus 627 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~ 668 (784)
.|++|+.++..+.+... .+++. .+...++..+.|--+.
T Consensus 163 ~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAGAPGA 200 (334)
T ss_pred cCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCCCHHH
Confidence 99999988877776532 23332 2355666777774443
No 360
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.52 E-value=3.5e-07 Score=105.05 Aligned_cols=193 Identities=22% Similarity=0.290 Sum_probs=110.2
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc---
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM--- 533 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~--- 533 (784)
.++.|.....+.+.+.+..- . .....|||+|++|||||++|+++...+ +.+|+.+++..+...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~----------a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV----------A-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CceeecCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 45566655555554443321 1 224469999999999999999999875 479999998876321
Q ss_pred --ccCcch-------HHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------
Q 042193 534 --WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------- 595 (784)
Q Consensus 534 --~~g~~~-------~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------- 595 (784)
.+|... ....-.|+.|.. ..||||||+.|. ..++..|+..++...
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGELP--------------LALQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhCC--------------HHHHHHHHHHHhcCCEeeCCCCcc
Confidence 112110 000113444432 489999999875 345677777776422
Q ss_pred CCCcEEEEEecCCCC-------CCCccccCCCCcccccccCCCCHHHHH----HHHHHHhc----cCC---CC-CccCHH
Q 042193 596 AKKTVFIIGATNRPD-------VIDPALLRPGRLDQLIYIPLPDEASRL----QIFKACLR----KSP---IS-PDVDLS 656 (784)
Q Consensus 596 ~~~~v~vi~aTn~~~-------~ld~allr~gRf~~~i~~~~p~~~~r~----~il~~~~~----~~~---~~-~~~~~~ 656 (784)
...++-||++||..- .+.+.|.. |+. .+.+..|...+|. .+++.+++ +.+ +. .+.-+.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 112578888988741 23333333 443 2334444444443 33333332 222 11 111245
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 657 ALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 657 ~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
.|..+.---+-++|++++..|+..+..
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 555554334669999999999887654
No 361
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.52 E-value=4e-06 Score=88.42 Aligned_cols=172 Identities=17% Similarity=0.308 Sum_probs=96.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC-cEEE---Eec----hhhh----hhh----cchh-H---HHHHHHH-HHHHhcC
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGA-FFFL---ING----PEIM----SKL----AGES-E---SNLRKAF-EEAEKNA 280 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~-~~~~---v~~----~~l~----~~~----~g~~-~---~~l~~vf-~~a~~~~ 280 (784)
..++|+||+|+||||+++.+++.+.. .+.. ++. .++. ..+ .+.. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998763 2211 111 1111 110 0111 1 1122222 2233456
Q ss_pred CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCC---CC-C---HHHHhcCCcceEEEe
Q 042193 281 PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPN---SI-D---PALRRFGRFDREIDI 352 (784)
Q Consensus 281 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~---~l-d---~al~r~~rf~~~i~i 352 (784)
+.++++||++.+.+. ....+..+.+.... ...+.++. +..++ .+ + ..+.+ |+...+++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl-~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFL-VGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEE-cCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 789999999876321 12222222221111 12222222 22222 11 1 12333 66777899
Q ss_pred CCCCHHHHHHHHHHHHcCCC-----cccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 353 GVPDEVGRLEVFRIHTKNMK-----LAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~-----~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
+..+.++-.+++...+.... ...+..++.+.+.+.|+... +..+|..+...+...
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 99999998888887665322 12344688899999998654 888888887766554
No 362
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.1e-06 Score=92.41 Aligned_cols=149 Identities=15% Similarity=0.252 Sum_probs=96.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 276 (784)
+..+||+||+|+|||++|+.+|+.+.+. ++.+...+- + ..-.-..++.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHHH
Confidence 4579999999999999999999987542 111211000 0 001224555555444
Q ss_pred H----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 277 E----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 277 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
. .....|++||++|.+.. ...+.|+..++.- ..++++|.+|+.++.+.|.+++ |... +.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQQ-QAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hcee-eeC
Confidence 3 34456899999998853 3456788888763 3467777889999999999998 6644 889
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcH
Q 042193 353 GVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVG 391 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~ 391 (784)
++|+.++-.+.|...... ..+.....++...+|-.+
T Consensus 163 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred CCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 999998888777654311 122233445555555443
No 363
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.51 E-value=3.4e-07 Score=105.40 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=32.7
Q ss_pred hhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 486 FEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 486 ~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
++.+++....| +.|.||+|+|||||++++++... ..-+.+++.++
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i 316 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 34445555555 88999999999999999998753 34566666443
No 364
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.51 E-value=2.4e-07 Score=106.45 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=33.7
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
.++.+++....| +.|.||+|+|||||+++|++... .+-+.+++.++
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 312 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI 312 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEEC
Confidence 345555555555 89999999999999999998753 45566666444
No 365
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.50 E-value=4e-07 Score=103.71 Aligned_cols=196 Identities=21% Similarity=0.317 Sum_probs=109.5
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM 533 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~ 533 (784)
..|+++.|.....+.+.+.+... . .....+||+|++||||+++|+++...+ +.+|+.+++..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------A-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45677778777666665554311 1 123469999999999999999998765 479999999766321
Q ss_pred -----ccCcch--------HHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----
Q 042193 534 -----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----- 595 (784)
Q Consensus 534 -----~~g~~~--------~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----- 595 (784)
.+|..+ ..-.-+|+.|.. ..||||||+.|. ..++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP--------------LPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC--------------HHHHHHHHHHHhcCcEEecC
Confidence 112110 011224554443 489999999874 345677777776421
Q ss_pred C----CCcEEEEEecCCC--CCCCccccCC---CCcccccccCCCCHHHH----HHHHHHHhccC----CCCCccC-HHH
Q 042193 596 A----KKTVFIIGATNRP--DVIDPALLRP---GRLDQLIYIPLPDEASR----LQIFKACLRKS----PISPDVD-LSA 657 (784)
Q Consensus 596 ~----~~~v~vi~aTn~~--~~ld~allr~---gRf~~~i~~~~p~~~~r----~~il~~~~~~~----~~~~~~~-~~~ 657 (784)
. .-++-+|++||.. +.++....|+ .|+. .+.+..|...+| ..++..++++. ++.-+.+ +..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1 1235688888874 2222221111 0332 234444444444 34444444332 2211111 222
Q ss_pred -------HHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 658 -------LARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 658 -------la~~~~g~sg~di~~l~~~a~~~a 681 (784)
|..+.---+-++|++++..++..+
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 444333335589999998887654
No 366
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.50 E-value=2.2e-07 Score=110.07 Aligned_cols=193 Identities=20% Similarity=0.262 Sum_probs=107.1
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccch---
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELL--- 531 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~--- 531 (784)
.|+++.|.....+.+.+.+... ......+||+|++||||+++|+++...+. .+|+.+++..+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4566666655544443332210 12234599999999999999999998753 699999987652
Q ss_pred --hcccCcc----hHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----CC----
Q 042193 532 --TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----AK---- 597 (784)
Q Consensus 532 --~~~~g~~----~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----~~---- 597 (784)
+.++|.. .....-.|+.|. ...||||||+.+. ..++..|+..++.-. +.
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~--------------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLS--------------PELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceE
Confidence 1222211 000001233332 3589999999864 345667777776421 11
Q ss_pred -CcEEEEEecCCCCCCCccccCCCCcc-------cccccCCCCHHHHH----HHHHHHhcc----CCCC---CccCHHHH
Q 042193 598 -KTVFIIGATNRPDVIDPALLRPGRLD-------QLIYIPLPDEASRL----QIFKACLRK----SPIS---PDVDLSAL 658 (784)
Q Consensus 598 -~~v~vi~aTn~~~~ld~allr~gRf~-------~~i~~~~p~~~~r~----~il~~~~~~----~~~~---~~~~~~~l 658 (784)
-++-||+|||..- .. +...|+|. ..+.+..|...+|. .+++.++++ .+.. .+.-+..|
T Consensus 455 ~~~~riI~~t~~~l--~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADL--AM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCH--HH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1567899988641 11 11123332 13344455554543 334444332 1111 11225555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 042193 659 ARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 659 a~~~~g~sg~di~~l~~~a~~~a 681 (784)
.++.---+-++|+++++.|+..+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC
Confidence 55553346789999999887654
No 367
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.7e-06 Score=91.04 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=114.5
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE----------EEEec
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF----------FLING 254 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~----------~~v~~ 254 (784)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|.++|+.+.+.- ...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4778999999999998887541 1245899999999999999999998863211 01111
Q ss_pred hhhh---------hh--------hcc--------hhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHH
Q 042193 255 PEIM---------SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVER 305 (784)
Q Consensus 255 ~~l~---------~~--------~~g--------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 305 (784)
+|+. ++ ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1111 00 000 01123455544433 23457999999987742
Q ss_pred HHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHh
Q 042193 306 RIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARD 385 (784)
Q Consensus 306 ~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~ 385 (784)
...+.|+..++... +.++|..|+.++.+-|.+++ |. ..+.+..++.++-.++|......-. .+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 24567888887654 33455567788999999988 65 4588999999988888876532111 11124566666
Q ss_pred cCCCcHHHH
Q 042193 386 THGYVGADL 394 (784)
Q Consensus 386 t~g~~~~dl 394 (784)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 666554433
No 368
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.49 E-value=8.1e-07 Score=86.82 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=61.3
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-C----CcEEEEecccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFVSVKGPEL 530 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~----~~~i~v~~~~l 530 (784)
...+.||+|.++..+.|.-.... | -.++++|.||||+||||-+.++|+++ | -.++.+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 44578899999998887654432 1 12459999999999999999999986 3 34566666553
Q ss_pred hhcccCcchHHHHHHHHHhhhCC----CeEEEEeccchhh
Q 042193 531 LTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIA 566 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~----p~vl~iDEid~l~ 566 (784)
.+ +. .-++--..|..-+-.. -.|+++||.|++.
T Consensus 90 RG--ID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 90 RG--ID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred cc--cH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 21 01 1122223444333222 2599999999864
No 369
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.49 E-value=5.2e-07 Score=103.94 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=33.9
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l 530 (784)
.++.+++....| +.|.||+|+|||||++++++... .+-+.+++.++
T Consensus 275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 445556555555 89999999999999999998753 35566665443
No 370
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=6e-07 Score=104.15 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|+||+|||||||++.|++.+
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889999999999999999999876
No 371
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.48 E-value=8e-07 Score=104.37 Aligned_cols=156 Identities=25% Similarity=0.355 Sum_probs=93.7
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC------------------
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG------------------ 246 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~------------------ 246 (784)
.|.+|.|++..+..+.-....+ ...+|||.|++|||||++|++|++.++
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999998776654332221 123699999999999999999999883
Q ss_pred -----------------CcEEEEechhhhhhhcchh--HHHHH---HHHHH--HHhcCCeEEEeehhhhhcCCCCCCchH
Q 042193 247 -----------------AFFFLINGPEIMSKLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKREKTNGE 302 (784)
Q Consensus 247 -----------------~~~~~v~~~~l~~~~~g~~--~~~l~---~vf~~--a~~~~p~il~iDEid~l~~~~~~~~~~ 302 (784)
.+++.+.+........|.. ...+. ..++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2333333221111111211 10010 00100 0011235999999998853
Q ss_pred HHHHHHHHHHHHhhcc-----------ccCCcEEEEEEcCCCC-CCCHHHHhcCCcceEEEeCCCC-HHHHHHHHHH
Q 042193 303 VERRIVSQLLTLMDGL-----------KSRAHVVVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLEVFRI 366 (784)
Q Consensus 303 ~~~~v~~~Ll~~ld~~-----------~~~~~vivI~atn~~~-~ld~al~r~~rf~~~i~i~~p~-~~~R~~il~~ 366 (784)
.+.+.|+..|+.- ....++.+|+++|..+ .+.++|.. ||...+.++.+. .+++.++++.
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456677776521 1124688999988643 57788877 898888887664 4667777764
No 372
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.2e-07 Score=96.27 Aligned_cols=97 Identities=34% Similarity=0.563 Sum_probs=72.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcch-hHHHHHHHHHHHH----hcCCeEEEeehhhhhcC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~il~iDEid~l~~ 294 (784)
..+|||.||+|+|||.||+.||+.++.++..-+|..+.. .|+|+ .+.-+..++++|. ..+-.|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 358999999999999999999999999999999988764 56775 4556777777653 23457999999999984
Q ss_pred CCCCCc---hHHHHHHHHHHHHHhhc
Q 042193 295 KREKTN---GEVERRIVSQLLTLMDG 317 (784)
Q Consensus 295 ~~~~~~---~~~~~~v~~~Ll~~ld~ 317 (784)
....-. +--..-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 432211 11124466678888875
No 373
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.48 E-value=2.5e-07 Score=106.71 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=32.7
Q ss_pred hhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 486 FEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 486 ~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
++.+.+....| +.|.||+|+|||||+++|++... .+-+.+++.++
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 327 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEI 327 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEC
Confidence 34445555555 89999999999999999998753 34566666543
No 374
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.9e-06 Score=91.82 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=99.7
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC---------------------cEEEEe-cccchh-cc-cCcchHHHHHHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA---------------------NFVSVK-GPELLT-MW-FGESEANVREIFD 547 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~---------------------~~i~v~-~~~l~~-~~-~g~~~~~i~~~f~ 547 (784)
..+..+||+||+|+||+++|.++|..+-+ .+..+. .++-.+ +. ..-.-..||.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34567999999999999999999986521 122221 010000 00 0012345666655
Q ss_pred Hhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 042193 548 KAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLD 623 (784)
Q Consensus 548 ~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 623 (784)
.+. .....|++||++|.+. ....|.||..|+.- ..++++|-+|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEEP--SPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhCC--CCCCeEEEEECChhhCchHHHh--hhe
Confidence 443 3345799999999874 34568999999964 3456666677888888899887 884
Q ss_pred cccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHH
Q 042193 624 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADIT 671 (784)
Q Consensus 624 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~ 671 (784)
.+.|++|+.++-.+.+... +++. .+...++..+.|--+..+.
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCCHHHHHH
Confidence 7789999988777777542 3332 2344667777775554443
No 375
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.47 E-value=3.4e-06 Score=85.36 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=84.9
Q ss_pred CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC------------CCCCCccccCCCC
Q 042193 554 PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR------------PDVIDPALLRPGR 621 (784)
Q Consensus 554 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~------------~~~ld~allr~gR 621 (784)
|.||||||++.|--. .-.++| ..+++ .-.-++|.+||+ |.-|+-.++. |
T Consensus 289 pGVLFIDEvHMLDIE-----------cFsFlN---rAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIE-----------CFSFLN---RALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhhhhH-----------HHHHHH---HHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 678888888875320 111222 22222 222366677776 3445556665 5
Q ss_pred cccccccCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 042193 622 LDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKR 700 (784)
Q Consensus 622 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 700 (784)
+ .+|.-.+++.++.++||+..+....+.-+.+ ++.|......-|-+--.+++..|.+.|.++.
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--------------- 413 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--------------- 413 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc---------------
Confidence 5 4667778899999999999997765543333 4455555555555666678888888887764
Q ss_pred CCCccccccCcccccHHHHHHHHhhc-cCCCCHHHHHHH
Q 042193 701 ENPEAMEVDDVDEITAAHFEESMKYA-RRSVSDADIRKY 738 (784)
Q Consensus 701 ~~~~~~~~~~~~~v~~~~~~~al~~~-~~s~~~~~~~~~ 738 (784)
...|..+|++.+..-. ...-+.+.+..|
T Consensus 414 ----------~~~v~~~di~r~y~LFlD~~Rs~~yl~E~ 442 (454)
T KOG2680|consen 414 ----------GKVVEVDDIERVYRLFLDEKRSMKYLTEY 442 (454)
T ss_pred ----------CceeehhHHHHHHHHHhhhhhhhHHHHHh
Confidence 2357888888887654 223333444433
No 376
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.46 E-value=3.5e-07 Score=88.64 Aligned_cols=109 Identities=28% Similarity=0.490 Sum_probs=70.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc-----ccCcc-------hHHHHHHHHHhhhCCCeEEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM-----WFGES-------EANVREIFDKARQSAPCVLFF 559 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g~~-------~~~i~~~f~~a~~~~p~vl~i 559 (784)
..|||+|++||||+++|+++...+ +.||+.|+++.+... .+|.. ...-.-+|+.|... .|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 569999999999999999999875 479999999876322 12221 11112467777665 9999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C----CCcEEEEEecCCCCCCCccccCCCCcc
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDVIDPALLRPGRLD 623 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~ 623 (784)
|||+.|. ..++..|++.|+.-. . .-++-||++|+. .+...+.. |+|.
T Consensus 100 d~I~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~-g~fr 155 (168)
T PF00158_consen 100 DEIEDLP--------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQ-GRFR 155 (168)
T ss_dssp ETGGGS---------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT-TSS-
T ss_pred cchhhhH--------------HHHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHc-CCCh
Confidence 9999975 346777888877321 1 136889999986 34444443 5665
No 377
>PLN03073 ABC transporter F family; Provisional
Probab=98.45 E-value=6e-07 Score=106.46 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=28.4
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHh
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 518 (784)
.++.+++....| +.|.||||+|||||+++|++..
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 566666666666 8999999999999999999975
No 378
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=7.7e-07 Score=89.27 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.+++.|-|.||||||||||.+.||+...
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567788899999999999999999998753
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.45 E-value=6.1e-06 Score=87.20 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=27.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.+++.+-|+|.+|||||..+.++.+.+..
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 35677899999999999999999999988754
No 380
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.45 E-value=1.7e-06 Score=103.17 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=112.5
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchh-
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLT- 532 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~- 532 (784)
..++++.|.....+.+.+.+..- ......+||+|++|||||++|+++...+ +.+|+.+++..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 34566777776666655444321 1123459999999999999999998865 46999999876532
Q ss_pred ----cccCc--------chHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----
Q 042193 533 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----- 595 (784)
Q Consensus 533 ----~~~g~--------~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----- 595 (784)
..+|. ...... .|+.+.. .++|||||+.+. ..++..|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a~~---GtL~Ldei~~L~--------------~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELADK---SSLFLDEVGDMP--------------LELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhcCC---CeEEEechhhCC--------------HHHHHHHHHHHHhCCEEeCC
Confidence 11221 112222 3444433 599999999864 345677777775421
Q ss_pred ----CCCcEEEEEecCCCC--CCC-----ccccCCCCcccccccCCCCHHHHH----HHHHHHhc----cCCCC----Cc
Q 042193 596 ----AKKTVFIIGATNRPD--VID-----PALLRPGRLDQLIYIPLPDEASRL----QIFKACLR----KSPIS----PD 652 (784)
Q Consensus 596 ----~~~~v~vi~aTn~~~--~ld-----~allr~gRf~~~i~~~~p~~~~r~----~il~~~~~----~~~~~----~~ 652 (784)
...++-+|++|+..- .+. +.+.. |+. .+.+..|...+|. .+++.+++ +.+.. .+
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 123577888888741 122 22222 332 3344555555553 33444332 22211 11
Q ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 653 VDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 653 ~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
.-+..|..+.---+-++|+++++.|+..+-
T Consensus 581 ~al~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 224555555433466899999999887553
No 381
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.43 E-value=1e-06 Score=101.35 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=95.1
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc-----ccCcch-------HHHHHHHHHhhhCCCeEEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 559 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g~~~-------~~i~~~f~~a~~~~p~vl~i 559 (784)
..++|+|++||||+++|+++...+ ..+|+.+++..+... .+|... ..-.-+|+.|.. ..+||
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~L 304 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLL 304 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEE
Confidence 449999999999999999987665 368999999876321 112110 001123554433 48999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC-------CCCCccccCCCCcc
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------DVIDPALLRPGRLD 623 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allr~gRf~ 623 (784)
|||+.+.. .++..|++.++... ...++-||+||+.+ ..+.+.|.. |+.
T Consensus 305 deI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~ 368 (520)
T PRK10820 305 DEIGEMSP--------------RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN 368 (520)
T ss_pred eChhhCCH--------------HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC
Confidence 99998743 35566777665421 11356788888764 123344444 553
Q ss_pred cccccCCCCHHHHH----HHHHHHh----ccCCCC-CccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 624 QLIYIPLPDEASRL----QIFKACL----RKSPIS-PDVD---LSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 624 ~~i~~~~p~~~~r~----~il~~~~----~~~~~~-~~~~---~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
.+.+..|...+|. .+++.++ .+.+.. .... +..|..+.---+-++|++++..|+..+-
T Consensus 369 -~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 369 -VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred -eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 2344444444443 3333333 333221 1122 3444443322355888888888876543
No 382
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=2.9e-06 Score=91.84 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=96.9
Q ss_pred cccccC-hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------------
Q 042193 186 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------------- 248 (784)
Q Consensus 186 ~~~i~G-~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------------- 248 (784)
|+.|.| ++..++.++..+... ..+..+||+||+|+|||++|+.+++.+.+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 455655 888888888776431 234568999999999999999999886421
Q ss_pred --------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 249 --------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 249 --------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
+..+... +. .-.-..++.+.+... .....|++|||+|.+.. ...+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 1111100 00 011234555544432 23346999999987742 24567888887
Q ss_pred ccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 042193 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRI 366 (784)
Q Consensus 317 ~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~ 366 (784)
.. ...+++|.+|+.+..+-+.+++ |. ..+++..|+.++-.++|+.
T Consensus 136 EP--p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EP--SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CC--CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 63 3455666677788899999988 55 4478999998887777653
No 383
>PRK08181 transposase; Validated
Probab=98.43 E-value=4.5e-07 Score=94.39 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=50.2
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccC-cchHHHHHHHHHhhhCCCeEEEEeccchhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 566 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~ 566 (784)
..+++|+||||||||+|+.+++.++ +..++.++.++++..+.. ........+++... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4569999999999999999999754 667888888887764421 11122334444443 34699999998754
No 384
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.42 E-value=8.7e-07 Score=85.90 Aligned_cols=131 Identities=27% Similarity=0.486 Sum_probs=75.9
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh----
Q 042193 189 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL---- 261 (784)
Q Consensus 189 i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~---- 261 (784)
|.|.+..++++++.+..... .+.+|||+|++||||+++|++|-+.. +.+|+.+||..+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 45666777777666544222 24689999999999999999998865 4689999997653221
Q ss_pred -cchhH-------HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCcE
Q 042193 262 -AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK---------SRAHV 324 (784)
Q Consensus 262 -~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v 324 (784)
.|... ..-...|+.|.. ..||||||+.|.+. +...|+..++.-. ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccc
Confidence 11100 001245555544 49999999988532 4455666665211 12368
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcc
Q 042193 325 VVMGATNRPNSIDPALRRFGRFD 347 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~ 347 (784)
-+|++|+.+ +...+. .|+|.
T Consensus 136 RiI~st~~~--l~~~v~-~g~fr 155 (168)
T PF00158_consen 136 RIIASTSKD--LEELVE-QGRFR 155 (168)
T ss_dssp EEEEEESS---HHHHHH-TTSS-
T ss_pred eEEeecCcC--HHHHHH-cCCCh
Confidence 888888853 333333 35663
No 385
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.42 E-value=1.4e-05 Score=92.07 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=49.8
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc--------------c--------c------Ccc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM--------------W--------F------GES 538 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~--------------~--------~------g~~ 538 (784)
|+.....++++|+||+|||+++..++.+. +.+.++++..+-... + . ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887643 556666654322100 0 0 001
Q ss_pred hHHHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 539 EANVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 539 ~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22334444455566788999999988764
No 386
>PRK04132 replication factor C small subunit; Provisional
Probab=98.42 E-value=4.4e-06 Score=99.03 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=107.6
Q ss_pred CceEEEEC--CCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhc------CCeEEEee
Q 042193 221 PKGILLYG--PPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN------APSIIFID 287 (784)
Q Consensus 221 ~~~vLL~G--ppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~------~p~il~iD 287 (784)
+-+-+..| |++.||||+|++||+++ +..++.+|+++..+. ..++.+...+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33456679 99999999999999998 456899999874321 2455555443322 23699999
Q ss_pred hhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHH
Q 042193 288 EIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIH 367 (784)
Q Consensus 288 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~ 367 (784)
|+|.+.. ...+.|+..|+... ..+.+|.+||++..+.+++++ |. ..+.|..|+.++-...|+..
T Consensus 638 EaD~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9998853 23456778887543 366788889999999999987 65 55889999988888888766
Q ss_pred HcCCCcc-cchhhhHHHHhcCCCcHHHH
Q 042193 368 TKNMKLA-EDVDLERVARDTHGYVGADL 394 (784)
Q Consensus 368 ~~~~~~~-~~~~l~~la~~t~g~~~~dl 394 (784)
+....+. ++..+..++..+.|-...-+
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 6543322 34457888888888554443
No 387
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.1e-05 Score=85.72 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVAN 243 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~ 243 (784)
+.+..++..-|+|++|+|||||+|+|++
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 101 LTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4456678899999999999999999998
No 388
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.41 E-value=5.1e-07 Score=88.92 Aligned_cols=46 Identities=33% Similarity=0.585 Sum_probs=34.7
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
|.+|.|++..+..+.-... | +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 6789999998887654332 1 35899999999999999999998775
No 389
>PRK08116 hypothetical protein; Validated
Probab=98.41 E-value=1.4e-06 Score=91.26 Aligned_cols=100 Identities=20% Similarity=0.390 Sum_probs=60.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcch----hHHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
+.+++|+|++|||||+||.++++.+ +.+++.++.+++....... .......+++.. ....+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 5677888888776543221 111122333332 234699999985421
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 294 PKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 294 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
. . .....+|..+++........ +|.|||.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~-~IiTsN~ 220 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLP-TIVTTNL 220 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCC-EEEECCC
Confidence 1 1 22345566666654333333 4445664
No 390
>PRK13409 putative ATPase RIL; Provisional
Probab=98.40 E-value=5.3e-07 Score=104.92 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.++..+.|.||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45677899999999999999999999764
No 391
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.39 E-value=5.8e-07 Score=103.52 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=33.2
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
.++.++++...| +.|.||+|+|||||++++++... .+-+.+++.++
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~ 317 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI 317 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC
Confidence 344555555555 89999999999999999998753 34555655443
No 392
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.39 E-value=1.6e-06 Score=101.08 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|+||+|||||||+++|++.+
T Consensus 28 ~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 28 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356778889999999999999999999976
No 393
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.38 E-value=1.9e-06 Score=99.86 Aligned_cols=53 Identities=30% Similarity=0.519 Sum_probs=43.4
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ 519 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 519 (784)
...|...|+++.|++++++.|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456677899999999999888765442 13699999999999999999998764
No 394
>PRK09183 transposase/IS protein; Provisional
Probab=98.38 E-value=7.1e-07 Score=93.02 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=49.9
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCc-chHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
..+++|+||||||||+|+.+++... +..+..++.+++...+... ....+..+|+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4569999999999999999998763 5667777777776443211 112345566654 245679999999864
No 395
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.1e-06 Score=90.10 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=89.5
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC-----------------------cEEEEecccchhcccCcchHHHHHHHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFVSVKGPELLTMWFGESEANVREIFDK 548 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~-----------------------~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 548 (784)
+.+.++||+||.|+||+++|+++|..+-. .+..+...+ .++.+ +-..||.+-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 45567999999999999999999986521 122232211 00111 22345555444
Q ss_pred h----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCccc
Q 042193 549 A----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQ 624 (784)
Q Consensus 549 a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 624 (784)
+ ......|++||++|.+. ....|.||..++. +..++++|..|+.++.|-|.+++ |..
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 3 33446799999999874 3456899999996 44567777788888888888887 884
Q ss_pred ccccCCCCHHHHHHHHHH
Q 042193 625 LIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 625 ~i~~~~p~~~~r~~il~~ 642 (784)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 789999999888777754
No 396
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.37 E-value=2.4e-06 Score=79.64 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
++.+.++..++|+||+|||||||.+.+|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 45678899999999999999999999998754
No 397
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.9e-06 Score=92.55 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=88.8
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC-------------------------cEEEEecccc---hhcc-cCcchHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFVSVKGPEL---LTMW-FGESEANV 542 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------------------------~~i~v~~~~l---~~~~-~g~~~~~i 542 (784)
+.+.++||+||+|+|||++|+.+|..+.+ .|+.+....- .++. -.-+-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45667999999999999999999997521 2333332110 0000 00123456
Q ss_pred HHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccC
Q 042193 543 REIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLR 618 (784)
Q Consensus 543 ~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr 618 (784)
|.+.+.+.. ....|+++|+++.+- ....+.|+..|+.... +..+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH
Confidence 666655543 445699999998864 3456778888887642 35566688888888888876
Q ss_pred CCCcccccccCCCCHHHHHHHHHH
Q 042193 619 PGRLDQLIYIPLPDEASRLQIFKA 642 (784)
Q Consensus 619 ~gRf~~~i~~~~p~~~~r~~il~~ 642 (784)
|. ..+.|++|+.++..+.+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 77 5788999999887777754
No 398
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.7e-07 Score=98.24 Aligned_cols=48 Identities=33% Similarity=0.588 Sum_probs=39.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 518 (784)
...+.||.|++..|+.+.-... -..++|++||||||||++|+.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3467899999999998875543 23569999999999999999988764
No 399
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=1.7e-06 Score=90.29 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=51.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcch-hHHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
..+.+++|+||||||||+|+.+++..+ +..+..+++.++....... ....+..+++.. ...+.+++|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 457789999999999999999998764 5566677777766443211 112344556554 2456799999997653
No 400
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.36 E-value=1.2e-05 Score=86.23 Aligned_cols=160 Identities=24% Similarity=0.356 Sum_probs=103.4
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEec--------c
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKG--------P 528 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~--------~ 528 (784)
+.+..+.|++..|..|.-...- +.-.|+|+.|+.|+||||++++|+..+.---+...+ +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4456678888887766432221 122469999999999999999999987422211111 0
Q ss_pred ------------------------cchhcccCcchHH-HH-----HHHH----------HhhhCCCeEEEEeccchhhhh
Q 042193 529 ------------------------ELLTMWFGESEAN-VR-----EIFD----------KARQSAPCVLFFDELDSIATQ 568 (784)
Q Consensus 529 ------------------------~l~~~~~g~~~~~-i~-----~~f~----------~a~~~~p~vl~iDEid~l~~~ 568 (784)
.+...-.|.++.. ++ ++.+ .|+. ...|+++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccccc--
Confidence 0111112333331 11 1111 0111 12499999998763
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCC-----------CCCCcEEEEEecCCC-CCCCccccCCCCcccccccCCC-CHHH
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGM-----------NAKKTVFIIGATNRP-DVIDPALLRPGRLDQLIYIPLP-DEAS 635 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~-----------~~~~~v~vi~aTn~~-~~ld~allr~gRf~~~i~~~~p-~~~~ 635 (784)
+.+++.||..+... ...-++++|||+|.- ..|-|.|+. ||...|.+..| +.++
T Consensus 158 ------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 158 ------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred ------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 56888888887642 123478999999975 478899998 99999988866 7899
Q ss_pred HHHHHHHHhcc
Q 042193 636 RLQIFKACLRK 646 (784)
Q Consensus 636 r~~il~~~~~~ 646 (784)
|.+|.+..+..
T Consensus 224 rv~Ii~r~~~f 234 (423)
T COG1239 224 RVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999887764
No 401
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.35 E-value=9.6e-07 Score=104.09 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=35.7
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
.++.+++....| +.|.||+|+|||||+++|++... .+-+.+++.++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 456667766666 88999999999999999999763 45666666554
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.35 E-value=4.2e-07 Score=89.12 Aligned_cols=70 Identities=31% Similarity=0.542 Sum_probs=46.7
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCc-chHHHHHHHHHhhhCCCeEEEEeccch
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 564 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~vl~iDEid~ 564 (784)
...+++|+||+|+|||+||.+++.++ +..+..++.++++...-.. ........++.... +.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 35679999999999999999999865 6788888988887543211 11122334444443 35999999864
No 403
>PRK06526 transposase; Provisional
Probab=98.34 E-value=6.1e-07 Score=92.98 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=46.3
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCc-chHHHHHHHHHhhhCCCeEEEEeccchhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 566 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~vl~iDEid~l~ 566 (784)
..+++|+||||||||+||.+++.++ +..+..++.++++...... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4579999999999999999999875 5566666666665433110 011122223322 235799999998754
No 404
>PRK12377 putative replication protein; Provisional
Probab=98.34 E-value=1.2e-06 Score=90.24 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=48.0
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCc--chHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~--~~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
..+++|+||||||||+||.++++.+ +..++.++.++++...-.. .......+++... ...+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3579999999999999999999986 5677888888876533110 0001123344432 3469999999764
No 405
>PRK08181 transposase; Validated
Probab=98.34 E-value=1.9e-06 Score=89.85 Aligned_cols=73 Identities=23% Similarity=0.454 Sum_probs=50.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcch-hHHHHHHHHHHHHhcCCeEEEeehhhhhcC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
.+.+++|+||||||||+|+.+++.++ +..+++++..+++...... ........+... ..+.+|+|||+.....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 46789999999999999999999765 5567778877776644211 111222334333 3457999999987643
No 406
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.33 E-value=6.4e-07 Score=96.06 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=61.9
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccC---cchHHHHHHHHHhhhCCCeEEEEeccchhhhh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 568 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g---~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~ 568 (784)
.+++|+||+|+|||+|+.++|.++ +..++.++.++++..... .........++... ...+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 679999999999999999999986 678888888887654311 01111111233333 336999999976422
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
.....+.|...++......+- +|.|||.+
T Consensus 261 -----------t~~~~~~Lf~iin~R~~~~k~-tIiTSNl~ 289 (329)
T PRK06835 261 -----------TEFSKSELFNLINKRLLRQKK-MIISTNLS 289 (329)
T ss_pred -----------CHHHHHHHHHHHHHHHHCCCC-EEEECCCC
Confidence 123345555555544332233 45566653
No 407
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=3.1e-06 Score=78.56 Aligned_cols=98 Identities=22% Similarity=0.411 Sum_probs=59.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh--------CCcEEEEechhhhh----------h----hcc--hhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET--------GAFFFLINGPEIMS----------K----LAG--ESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l--------~~~~~~v~~~~l~~----------~----~~g--~~~~~l~~vf~~a 276 (784)
...++++||||+|||++++.++..+ ...++.++++...+ . ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999987 56677777654321 0 001 1222334444444
Q ss_pred HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc
Q 042193 277 EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT 330 (784)
Q Consensus 277 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at 330 (784)
......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44544599999999975 1 345566666666 334456666643
No 408
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=3.4e-06 Score=78.15 Aligned_cols=70 Identities=31% Similarity=0.408 Sum_probs=47.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~--~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 292 (784)
.+.++|+||.||||||+++.+++.+. ..+++++..+.......... +...+.+.....+.++||||++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998876 67788887655432211111 222222222235679999999877
No 409
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.31 E-value=4e-06 Score=97.71 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|+||+|+|||||++.|++.+
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345778889999999999999999999876
No 410
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=4.2e-06 Score=77.63 Aligned_cols=98 Identities=24% Similarity=0.382 Sum_probs=61.5
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh--------CCcEEEEecccchhc----------c----cC--cchHHHHHHHHHhh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC--------QANFVSVKGPELLTM----------W----FG--ESEANVREIFDKAR 550 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~--------~~~~i~v~~~~l~~~----------~----~g--~~~~~i~~~f~~a~ 550 (784)
+.++++||+|+|||++++.++... ..+++.++.+...+. + .. ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999986 677777776544310 0 01 12233344455555
Q ss_pred hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 551 QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 551 ~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
.....+|+|||+|.+. . ..+++.|...++ ...-+++++|+.+
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5555699999999964 1 456666666555 3334566666654
No 411
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.29 E-value=1e-05 Score=91.82 Aligned_cols=171 Identities=18% Similarity=0.251 Sum_probs=94.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-------hcccCcch------HHHHHHHH-----Hhhh-----
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-------TMWFGESE------ANVREIFD-----KARQ----- 551 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-------~~~~g~~~------~~i~~~f~-----~a~~----- 551 (784)
+-+||+|||||||||++++||.+++..+.....+... ..|.+... ..+ ..|+ .++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~ 124 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSM 124 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchh-hhhccccccccccccccc
Confidence 3488999999999999999999999877765433221 11111100 011 1121 1121
Q ss_pred ------CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEe-cC------CC--------C
Q 042193 552 ------SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA-TN------RP--------D 610 (784)
Q Consensus 552 ------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~a-Tn------~~--------~ 610 (784)
..+.||++||+=.+... ...++.+.|.+.+..-... .+++|.+ +. .. .
T Consensus 125 ~g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 125 SGSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred cCCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhhh
Confidence 24679999998765432 1234444444444432111 5566555 11 11 1
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC--------CCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--------PISPDVD-LSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~--------~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
.+.+.++.-.++ ..|.|.+-.....+..|+..+... ....... ++.|++.+.| ||+.++......+
T Consensus 194 L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~ 268 (519)
T PF03215_consen 194 LFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWC 268 (519)
T ss_pred ccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHh
Confidence 345666542233 578888777766555555554332 1111122 6667765544 9999998888777
Q ss_pred H
Q 042193 682 I 682 (784)
Q Consensus 682 ~ 682 (784)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 7
No 412
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.29 E-value=1.6e-06 Score=89.85 Aligned_cols=68 Identities=29% Similarity=0.467 Sum_probs=49.1
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhccc-----CcchHHHHHHHHHhhhCCCeEEEEeccch
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWF-----GESEANVREIFDKARQSAPCVLFFDELDS 564 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~-----g~~~~~i~~~f~~a~~~~p~vl~iDEid~ 564 (784)
...+++|+||||+|||+||-|+++++ |..++.+..+++++..- |..+..+... .. ...+|||||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~--~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LK--KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hh--cCCEEEEecccC
Confidence 46779999999999999999999986 67888899998875432 1222222222 22 235999999976
Q ss_pred h
Q 042193 565 I 565 (784)
Q Consensus 565 l 565 (784)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 413
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.28 E-value=1.4e-06 Score=92.70 Aligned_cols=70 Identities=31% Similarity=0.483 Sum_probs=49.1
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCc-chHHHHHHHHHhhhCCCeEEEEeccch
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 564 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~vl~iDEid~ 564 (784)
..+|++|+||+|+|||+|+.++|+++ +.++..+..++++...... ........++... ...+|+||||..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 34789999999999999999999987 6777888888775443211 0111233444433 346999999975
No 414
>PRK06526 transposase; Provisional
Probab=98.28 E-value=1.9e-06 Score=89.32 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=46.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcch-hHHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
.+.+++|+||||||||+|+.+|+.++ +..+..++..+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46789999999999999999998875 4455555565555433211 011122223322 346799999998764
No 415
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.28 E-value=2e-06 Score=94.76 Aligned_cols=155 Identities=29% Similarity=0.396 Sum_probs=97.5
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhh-
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM- 258 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~- 258 (784)
..+|++|.|-..++.++.+.... .......|||.|.+||||..+|++|-+.. +.+|+.+||..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 35688999999888887776654 12345689999999999999999998765 5789999996442
Q ss_pred --------hhhcchhHHHH----HHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc--------c
Q 042193 259 --------SKLAGESESNL----RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG--------L 318 (784)
Q Consensus 259 --------~~~~g~~~~~l----~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~--------~ 318 (784)
+...|...... ...|+.|.. ..||+|||..+.. .+...|+..+.. .
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCC
Confidence 22222211111 234444433 4899999977642 234455555532 1
Q ss_pred c-cCCcEEEEEEcCCCCCCCHHHHhcCCcc-------eEEEeCCCCHHHHHHHHH
Q 042193 319 K-SRAHVVVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEVFR 365 (784)
Q Consensus 319 ~-~~~~vivI~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~il~ 365 (784)
. .+..|-||+|||+. +..++. -|+|. ..+.+..|...+|.+-+.
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~ 427 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIP 427 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHH
Confidence 1 13478899999974 323332 13332 125677888777765443
No 416
>PRK06921 hypothetical protein; Provisional
Probab=98.28 E-value=1e-06 Score=92.16 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=45.2
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh----CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccch
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 564 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~ 564 (784)
..+++|+||||+|||+|+.++|+++ +..++++...+++...... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4679999999999999999999975 4567777776665432111 11112222332 2346999999954
No 417
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.28 E-value=1.3e-05 Score=82.17 Aligned_cols=182 Identities=27% Similarity=0.397 Sum_probs=94.5
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE---EEEec-h--------hh
Q 042193 190 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF---FLING-P--------EI 257 (784)
Q Consensus 190 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~---~~v~~-~--------~l 257 (784)
.|-+++++.|.+++.. .+...++|+||.|+|||+|++.+...+.... +++.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 3556667777665532 2356899999999999999999999873211 11111 0 00
Q ss_pred -------------hhh-h------------cchhHHHHHHHHHHHHhcC-CeEEEeehhhhhc-CCCCCCchHHHHHHHH
Q 042193 258 -------------MSK-L------------AGESESNLRKAFEEAEKNA-PSIIFIDEIDSIA-PKREKTNGEVERRIVS 309 (784)
Q Consensus 258 -------------~~~-~------------~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~-~~~~~~~~~~~~~v~~ 309 (784)
... . .......+..+++...... ..+++|||++.+. ... . ...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~----~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E----DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T----THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c----hHHHHH
Confidence 000 0 0112344556666655443 3799999999998 211 1 134556
Q ss_pred HHHHHhhccccCCcEEEEEEcCCCCCC----CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCC-c-ccchhhhHHH
Q 042193 310 QLLTLMDGLKSRAHVVVMGATNRPNSI----DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMK-L-AEDVDLERVA 383 (784)
Q Consensus 310 ~Ll~~ld~~~~~~~vivI~atn~~~~l----d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~-~-~~~~~l~~la 383 (784)
.|.+.++......++.+|.+....... +..-.-.+|+.. +.++..+.++..+++........ + .++.+++.+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 666777664444454444333321100 111112357766 99999999999999988765541 1 2556678888
Q ss_pred HhcCCCcH
Q 042193 384 RDTHGYVG 391 (784)
Q Consensus 384 ~~t~g~~~ 391 (784)
..+.|+.+
T Consensus 222 ~~~gG~P~ 229 (234)
T PF01637_consen 222 SLTGGNPR 229 (234)
T ss_dssp HHHTT-HH
T ss_pred HHhCCCHH
Confidence 88888643
No 418
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.27 E-value=2.8e-06 Score=96.81 Aligned_cols=152 Identities=28% Similarity=0.403 Sum_probs=91.8
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH-----------hCCcEEEEe
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANE-----------TGAFFFLIN 253 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~-----------l~~~~~~v~ 253 (784)
.|++|.|....++++++.+...- ....+|||+|++||||+++|++|... .+.+|+.+|
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57789999999998887765311 23568999999999999999999876 356899999
Q ss_pred chhhhhhh-----cchhHH--------HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-
Q 042193 254 GPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK- 319 (784)
Q Consensus 254 ~~~l~~~~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~- 319 (784)
|..+.... .|.... .-...|+.+ ....||||||+.+... +...|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP-----------LQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH-----------HHHHHHhhhhcCeE
Confidence 97653211 110000 001133333 2358999999988532 3445555554311
Q ss_pred --------cCCcEEEEEEcCCCCCCCHHHHhcCCcc-------eEEEeCCCCHHHHHHHH
Q 042193 320 --------SRAHVVVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEVF 364 (784)
Q Consensus 320 --------~~~~vivI~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~il 364 (784)
....+-+|++|+.. +.... ..|+|. ..+.+..|...+|.+-+
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI 408 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADI 408 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHH
Confidence 11245678787753 21111 112222 12567777777776533
No 419
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.26 E-value=9.8e-06 Score=91.81 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=36.0
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
..|.++.|....++.+.-. +..+.+++|+|||||||||+++.+++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 3677888877765443321 23457899999999999999999998654
No 420
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.25 E-value=2.1e-06 Score=87.75 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+++++-+.|.||+|||||||+|++++.+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456778899999999999999999999775
No 421
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.25 E-value=1.2e-06 Score=89.85 Aligned_cols=69 Identities=25% Similarity=0.402 Sum_probs=50.0
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCc---chHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~---~~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
.+++|+|+||||||+|+.++|..+ +..++.++.+++....... .......+++... .+++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 479999999999999999999987 6778888888887543221 1112234455433 4579999999874
No 422
>PF13173 AAA_14: AAA domain
Probab=98.25 E-value=4.3e-06 Score=77.47 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=46.1
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
-++|+||.|+||||+++.++.... ..++.++..+.......... +...+.+.....+.++|||||+.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 489999999999999999998876 77788877765432111111 223333322225679999999986
No 423
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.1e-05 Score=86.97 Aligned_cols=133 Identities=15% Similarity=0.231 Sum_probs=90.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcE-------------------------EEEechhhh---------------
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGAFF-------------------------FLINGPEIM--------------- 258 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~-------------------------~~v~~~~l~--------------- 258 (784)
..+..+||+||+|+||+++|+.+|+.+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3456899999999999999999998874421 111100000
Q ss_pred ---hh----h-cchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEE
Q 042193 259 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVV 326 (784)
Q Consensus 259 ---~~----~-~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 326 (784)
++ . ..-.-..++.+.+... .....|++||++|.+.. ...+.|+..++. ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0011234555554432 23346999999998853 345778888885 4557788
Q ss_pred EEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHH
Q 042193 327 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIH 367 (784)
Q Consensus 327 I~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~ 367 (784)
|.+|+.++.+.|.+++ |. ..+.++.|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8889999999999998 76 56899999998888888653
No 424
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.23 E-value=6.5e-06 Score=88.94 Aligned_cols=148 Identities=22% Similarity=0.257 Sum_probs=85.1
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhc----
Q 042193 190 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLA---- 262 (784)
Q Consensus 190 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~---- 262 (784)
.|....++++.+.+..-. .....|||+|++||||+++|++|.... +.+|+.+||..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 455666666655544311 235679999999999999999997654 36899999975532111
Q ss_pred -chhH-------HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCcEE
Q 042193 263 -GESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK---------SRAHVV 325 (784)
Q Consensus 263 -g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vi 325 (784)
|... ..-...|+.+ ...+||||||+.+... +...|+..++.-. ....+-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-----------VQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-----------HHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0000113322 3469999999988532 3445555554311 123567
Q ss_pred EEEEcCCC-------CCCCHHHHhcCCcceEEEeCCCCHHHHHHHHH
Q 042193 326 VMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEVFR 365 (784)
Q Consensus 326 vI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~ 365 (784)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+-+.
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~ 180 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIM 180 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHH
Confidence 88887653 122333332 443 24567777777765433
No 425
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.22 E-value=9.6e-06 Score=84.15 Aligned_cols=72 Identities=31% Similarity=0.547 Sum_probs=50.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHH-HHHHHHHHHHhcCCeEEEeehhhhh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l 292 (784)
.+.+++|+||||+|||+||-+|++++ |..+..+..++++......... ....-+.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCc
Confidence 57899999999999999999999987 5677888888887654322211 1111122211 23469999998655
No 426
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.22 E-value=3.6e-06 Score=91.18 Aligned_cols=194 Identities=23% Similarity=0.310 Sum_probs=111.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH----hCCcEEEEechhhh
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANE----TGAFFFLINGPEIM 258 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~----l~~~~~~v~~~~l~ 258 (784)
...++++.|.+..++++++-+.. ++ ..+.+||++|++||||+.+|++|... ...+|+.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~---~a--------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA---YA--------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh---hC--------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34567899999888888877654 21 34678999999999999999999743 35689999998765
Q ss_pred hhhcch------------hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc-----ccc-
Q 042193 259 SKLAGE------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG-----LKS- 320 (784)
Q Consensus 259 ~~~~g~------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~~- 320 (784)
...... ....-..+|+.|.. ..||+|||+.+.+. ....|+..++. +..
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCCC
Confidence 432110 00111223444433 49999999988654 23456667664 111
Q ss_pred ---CCcEEEEEEcCCCCCCCHHHHh---cC--CcceEEEeCCCCHHHHHHHHH--------HHHcCCCcccchhhhHHHH
Q 042193 321 ---RAHVVVMGATNRPNSIDPALRR---FG--RFDREIDIGVPDEVGRLEVFR--------IHTKNMKLAEDVDLERVAR 384 (784)
Q Consensus 321 ---~~~vivI~atn~~~~ld~al~r---~~--rf~~~i~i~~p~~~~R~~il~--------~~~~~~~~~~~~~l~~la~ 384 (784)
...|.+|+||+.. ++.++.. .- ++. +.+..|.-.+|.+-+. ..++.+......+..+...
T Consensus 209 ~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 209 QPRPVDVRLICATTED--LEEAVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCcCCCceeeeccccC--HHHHHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 2367788777642 3333322 00 333 3455666666643222 2233333322222222333
Q ss_pred hcCCC----cHHHHHHHHHHHHHHH
Q 042193 385 DTHGY----VGADLAALCTEAALQC 405 (784)
Q Consensus 385 ~t~g~----~~~dl~~l~~~a~~~~ 405 (784)
.-..| +-+++.+++..++..+
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 32333 3367777777776554
No 427
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.22 E-value=6.9e-06 Score=84.22 Aligned_cols=162 Identities=22% Similarity=0.363 Sum_probs=90.1
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCC-c--EEEEec-ccc---------------------hhc-------------cc
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQA-N--FVSVKG-PEL---------------------LTM-------------WF 535 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~-~--~i~v~~-~~l---------------------~~~-------------~~ 535 (784)
...++|+||.|+|||+|++.+...... . .+.+.. ... ... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999998732 1 111111 000 000 00
Q ss_pred CcchHHHHHHHHHhhhCC-CeEEEEeccchhh-hhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcE-EEEEecCC--C-
Q 042193 536 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTV-FIIGATNR--P- 609 (784)
Q Consensus 536 g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~-~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v-~vi~aTn~--~- 609 (784)
......+..+++...... ..+|+|||++.+. ..+ ....++..|...++......++ +|+++++. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 122345566666655443 3899999999988 221 2356777787777775444444 44444432 1
Q ss_pred C--CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-CC-CCccCHHHHHHHcCCCCH
Q 042193 610 D--VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-PI-SPDVDLSALARYTHGFSG 667 (784)
Q Consensus 610 ~--~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~-~~-~~~~~~~~la~~~~g~sg 667 (784)
+ .-+..+. +|+.. +++++.+.++..++++..++.. .+ .++.+++.+...+.|..+
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 1 1123333 37877 9999999999999999987765 11 245668888888888554
No 428
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.20 E-value=8.5e-06 Score=94.73 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=85.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhhcchhH--HHHH---HHHHH--HHhcCCeEEEeehhhhh
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESE--SNLR---KAFEE--AEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~~~l~~~~~g~~~--~~l~---~vf~~--a~~~~p~il~iDEid~l 292 (784)
.+|||.|+||||||+++++++..++. +|+.+..........|... ..+. ..|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998764 4776664222222222210 0000 00000 00112259999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhccc-----------cCCcEEEEEEcCCCC---CCCHHHHhcCCcceEEEeC-CCCH
Q 042193 293 APKREKTNGEVERRIVSQLLTLMDGLK-----------SRAHVVVMGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 357 (784)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~atn~~~---~ld~al~r~~rf~~~i~i~-~p~~ 357 (784)
.+ .+.+.|+..|+.-. ....+.+|+++|..+ .+.+++.. ||...+.+. .|..
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 53 35566777775321 124678889888765 67888877 888877665 4567
Q ss_pred HHHHHHHHHHH
Q 042193 358 VGRLEVFRIHT 368 (784)
Q Consensus 358 ~~R~~il~~~~ 368 (784)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
No 429
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.20 E-value=1.7e-05 Score=91.28 Aligned_cols=151 Identities=25% Similarity=0.359 Sum_probs=91.9
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL 261 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~ 261 (784)
.+.++.|....++++.+.+..- ...+.+|||+|++||||+++|++|.... +.+++.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5667899999888887766541 1235689999999999999999998874 4689999997653211
Q ss_pred -----cchhHH-------HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc---------c
Q 042193 262 -----AGESES-------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK---------S 320 (784)
Q Consensus 262 -----~g~~~~-------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 320 (784)
.|.... .-...|+.+ ....||||||+.+... +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 110000 000123332 3468999999988532 3445555554211 1
Q ss_pred CCcEEEEEEcCCCC-------CCCHHHHhcCCcceEEEeCCCCHHHHHHH
Q 042193 321 RAHVVVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLEV 363 (784)
Q Consensus 321 ~~~vivI~atn~~~-------~ld~al~r~~rf~~~i~i~~p~~~~R~~i 363 (784)
...+-+|++|+..- .+.+.|.. |+. .+.+..|...+|.+-
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eD 366 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDD 366 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhh
Confidence 13567888887541 12233322 332 245677777777653
No 430
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.20 E-value=7.6e-06 Score=88.48 Aligned_cols=150 Identities=23% Similarity=0.273 Sum_probs=89.2
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh--
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-- 260 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~-- 260 (784)
++++.|.+..++++++.+..-. ....+|||+|++||||+++|++|.... +.+++.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4567888888888877664311 235679999999999999999998664 357999999765321
Q ss_pred ---hcchhH-------HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc--c-------C
Q 042193 261 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK--S-------R 321 (784)
Q Consensus 261 ---~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 321 (784)
..|... ......|+.+ ....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 0001122222 3468999999988532 3445555554311 1 1
Q ss_pred CcEEEEEEcCCC-------CCCCHHHHhcCCcceEEEeCCCCHHHHHHH
Q 042193 322 AHVVVMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEV 363 (784)
Q Consensus 322 ~~vivI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~~i 363 (784)
..+-+|++|+.. ..+.+.|.. ||.. +.+..|...+|.+-
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~-~~i~lPpLReR~eD 185 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAF-DVVQLPPLRERQSD 185 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCC-CEEECCChhhhhhh
Confidence 246777777653 233344443 4532 45666777777553
No 431
>PRK12377 putative replication protein; Provisional
Probab=98.20 E-value=7.5e-06 Score=84.30 Aligned_cols=70 Identities=27% Similarity=0.454 Sum_probs=47.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhH--HHHHHHHHHHHhcCCeEEEeehhhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~il~iDEid~l 292 (784)
..+++|+||||||||+||.++++.+ +..++.++..++......... .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999987 455677777777654321110 0112233332 35679999998654
No 432
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.19 E-value=5.1e-06 Score=95.32 Aligned_cols=131 Identities=19% Similarity=0.211 Sum_probs=80.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE----echhhhhhh-----cchhHHHHHHHHHHHHhcCCeEEEeehhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v----~~~~l~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 291 (784)
..+|||+|+||||||++|+.+++..+...+.. ++..+.... .|+..-.-+. +.. ....++++||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~-l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGA-LVL---ADNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCcc-EEe---cCCCEEEEechhh
Confidence 44799999999999999999999876443221 111111100 0110000000 111 1235999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhccc-----------cCCcEEEEEEcCCCC-------------CCCHHHHhcCCcc
Q 042193 292 IAPKREKTNGEVERRIVSQLLTLMDGLK-----------SRAHVVVMGATNRPN-------------SIDPALRRFGRFD 347 (784)
Q Consensus 292 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~atn~~~-------------~ld~al~r~~rf~ 347 (784)
+.+. ....|+..|+.-. -..++.||+++|+.+ .+++++.. ||+
T Consensus 312 l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 7532 3445566664321 124678999999753 57888887 997
Q ss_pred eEE-EeCCCCHHHHHHHHHHHH
Q 042193 348 REI-DIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 348 ~~i-~i~~p~~~~R~~il~~~~ 368 (784)
..+ ....|+.+.+.+|.+..+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHH
Confidence 754 457899998888887644
No 433
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.19 E-value=1.5e-05 Score=76.94 Aligned_cols=126 Identities=24% Similarity=0.384 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------------------
Q 042193 191 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------------------- 248 (784)
Q Consensus 191 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------------------- 248 (784)
|+++.++.|.+++..- ..+..+||+||+|+||+++|+.+|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6677777777766541 234579999999999999999999886321
Q ss_pred -EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCc
Q 042193 249 -FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAH 323 (784)
Q Consensus 249 -~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 323 (784)
++.++...-.. .-.-..++.+..... ....-|++|||+|.+. ....+.|+..|+... ..
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTT--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCC--CC
Confidence 22222211100 112345555555432 2345799999999885 235677888888643 46
Q ss_pred EEEEEEcCCCCCCCHHHHhcCCc
Q 042193 324 VVVMGATNRPNSIDPALRRFGRF 346 (784)
Q Consensus 324 vivI~atn~~~~ld~al~r~~rf 346 (784)
+.+|.+|+.++.+-+.+++ |.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc 153 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC 153 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS
T ss_pred EEEEEEECChHHChHHHHh--hc
Confidence 7777788999999999988 65
No 434
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=8.5e-05 Score=79.48 Aligned_cols=127 Identities=16% Similarity=0.286 Sum_probs=87.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 276 (784)
+..+||+||+|+||+++|+.+|+.+.+. ++.+...+ ++ .-.-..+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHH
Confidence 4579999999999999999999887431 11121100 00 01233455554443
Q ss_pred ----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 277 ----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 277 ----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
......|++||++|.+.. ...+.|+..++. ....+++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 234456999999998853 345678888876 44567778888999999999987 65 34789
Q ss_pred CCCCHHHHHHHHHHH
Q 042193 353 GVPDEVGRLEVFRIH 367 (784)
Q Consensus 353 ~~p~~~~R~~il~~~ 367 (784)
.+|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999988887777654
No 435
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.18 E-value=3.9e-05 Score=87.20 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=51.0
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
+++.+.+.+++.-+++-++++++++...+. +-.+.+-+||+|||||||||++++||++++..+..
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 356777888999999999999988864221 12334568899999999999999999999876654
No 436
>PRK06921 hypothetical protein; Provisional
Probab=98.18 E-value=8.8e-06 Score=85.11 Aligned_cols=69 Identities=28% Similarity=0.387 Sum_probs=45.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 291 (784)
...+++|+||||+|||+|+.++++++ +..++++...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999986 34556777666544321111 1112222222 3457999999954
No 437
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.17 E-value=2.6e-05 Score=83.77 Aligned_cols=161 Identities=26% Similarity=0.432 Sum_probs=98.5
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech-------
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP------- 255 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~------- 255 (784)
.+.|.-+.|.+..+..|. +.--.| .-.++||.|+.|+||||++|+|+..|+...+...|.
T Consensus 13 ~~pf~aivGqd~lk~aL~----l~av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALG----LNAVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHh----hhhccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 345667888887555432 211111 235799999999999999999999986544333330
Q ss_pred ------hh-------------------hhhhcchhHHHH------HHHHH-HHHh--------cCCeEEEeehhhhhcCC
Q 042193 256 ------EI-------------------MSKLAGESESNL------RKAFE-EAEK--------NAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 256 ------~l-------------------~~~~~g~~~~~l------~~vf~-~a~~--------~~p~il~iDEid~l~~~ 295 (784)
+. ...-.+.++.++ ..+.. .... ....|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 00 111112233311 11111 1111 123599999997664
Q ss_pred CCCCchHHHHHHHHHHHHHhhc-----------cccCCcEEEEEEcCCCC-CCCHHHHhcCCcceEEEeCCC-CHHHHHH
Q 042193 296 REKTNGEVERRIVSQLLTLMDG-----------LKSRAHVVVMGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLE 362 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~vivI~atn~~~-~ld~al~r~~rf~~~i~i~~p-~~~~R~~ 362 (784)
..++..|+..+.. +....++++|||+|+-+ .|-|-|+- ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4567777776643 12235799999999764 56677765 89999987765 5678888
Q ss_pred HHHHHHc
Q 042193 363 VFRIHTK 369 (784)
Q Consensus 363 il~~~~~ 369 (784)
|.+....
T Consensus 227 Ii~r~~~ 233 (423)
T COG1239 227 IIRRRLA 233 (423)
T ss_pred HHHHHHH
Confidence 8875543
No 438
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.17 E-value=2.6e-06 Score=83.54 Aligned_cols=70 Identities=27% Similarity=0.608 Sum_probs=46.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchh-HHHHHHHHHHHHhcCCeEEEeehhh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEID 290 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid 290 (784)
..+.+++|+||||||||+||.++++++ +..+..++..+++....... .......++... .+.+|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 346799999999999999999999875 66778888888776432211 111223344433 34699999985
No 439
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.16 E-value=0.00011 Score=74.06 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=109.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCc-----------
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-GAF----------- 248 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-~~~----------- 248 (784)
+.+-.++.+.+.++....++.+..- ..-.++++|||+|+||-|.+.++-+++ |..
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 4444556666677766666544321 112479999999999999999988876 211
Q ss_pred -----------------EEEEechhhhhhhcchh-HHHHHHHHHHHHhcC---------CeEEEeehhhhhcCCCCCCch
Q 042193 249 -----------------FFLINGPEIMSKLAGES-ESNLRKAFEEAEKNA---------PSIIFIDEIDSIAPKREKTNG 301 (784)
Q Consensus 249 -----------------~~~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~---------p~il~iDEid~l~~~~~~~~~ 301 (784)
.+.++.++ .|-. ..-++.++.+..+.. ..+++|-|+|.|...
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d------ 142 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD------ 142 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH------
Confidence 01122222 1211 122444444443322 368999999888532
Q ss_pred HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhh
Q 042193 302 EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLE 380 (784)
Q Consensus 302 ~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~ 380 (784)
....|...|+.+....++ |..+|....+-+++++ |. ..+.++.|+.++-..++...+.+-.+. +..-+.
T Consensus 143 -----AQ~aLRRTMEkYs~~~Rl--Il~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 143 -----AQHALRRTMEKYSSNCRL--ILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred -----HHHHHHHHHHHHhcCceE--EEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 344566677776664444 4467888888888887 43 237899999999999998776554332 233467
Q ss_pred HHHHhcCCCcH
Q 042193 381 RVARDTHGYVG 391 (784)
Q Consensus 381 ~la~~t~g~~~ 391 (784)
++++.+.|-..
T Consensus 213 rIa~kS~~nLR 223 (351)
T KOG2035|consen 213 RIAEKSNRNLR 223 (351)
T ss_pred HHHHHhcccHH
Confidence 78887776543
No 440
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=5.9e-06 Score=84.07 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCH
Q 042193 270 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 270 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~ 338 (784)
|-.++.|..+.|.++++|| +...++..-...++.++..++.. ...|+..|++...+..
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh
Confidence 5567788889999999999 33334444556677778777777 6667777787655433
No 441
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.15 E-value=6.1e-06 Score=88.62 Aligned_cols=100 Identities=22% Similarity=0.386 Sum_probs=60.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcch---hHHHHHHHHHHHHhcCCeEEEeehhhhhcC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
..+++|+||+|||||+|+.++|+++ +..+++++..++....... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999987 5667888887776543211 001111123332 2347999999876532
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 295 KREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 295 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
. ......|..+++.......-++| +||.
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSNl 288 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STNL 288 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 1 12234555666544333333444 5553
No 442
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.15 E-value=6.5e-06 Score=79.71 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=64.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh--------hhcc-----hhHHHHHHHHHHHHhcC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS--------KLAG-----ESESNLRKAFEEAEKNA 280 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~--------~~~g-----~~~~~l~~vf~~a~~~~ 280 (784)
+.+.++..+.|.||+|+|||||++.|++..... -+.+++.++.. ...+ ....+-+..+..+....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999986432 24444433211 1010 11224455677777888
Q ss_pred CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC
Q 042193 281 PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN 334 (784)
Q Consensus 281 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~ 334 (784)
|.++++||-..-+ +......+...+..+..+ ...+|.+|++++
T Consensus 101 p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~ 143 (163)
T cd03216 101 ARLLILDEPTAAL----------TPAEVERLFKVIRRLRAQ-GVAVIFISHRLD 143 (163)
T ss_pred CCEEEEECCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 9999999954332 222233444444444333 334444666654
No 443
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.15 E-value=1.9e-05 Score=94.40 Aligned_cols=152 Identities=26% Similarity=0.387 Sum_probs=91.6
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 260 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~ 260 (784)
..|+++.|....++.+.+.+..-. ....+|||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 356788898888888776654311 234589999999999999999998764 468899999765321
Q ss_pred -----hcch--------hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc--------
Q 042193 261 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-------- 319 (784)
Q Consensus 261 -----~~g~--------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 319 (784)
..|. ..... ..|+.+ ...+|||||++.+.. .+...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 11111 123332 346999999998853 23445555554311
Q ss_pred -cCCcEEEEEEcCCCC-------CCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 042193 320 -SRAHVVVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLEVF 364 (784)
Q Consensus 320 -~~~~vivI~atn~~~-------~ld~al~r~~rf~~~i~i~~p~~~~R~~il 364 (784)
....+-+|++|+..- .+...+-. |+. .+.+..|...+|.+-+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di 556 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDI 556 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHH
Confidence 123567888876541 11122211 332 3567778777776543
No 444
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.14 E-value=1.2e-05 Score=82.73 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=96.0
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--E----EEEecccch
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN--F----VSVKGPELL 531 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~--~----i~v~~~~l~ 531 (784)
..+++.+.+++...+.+.... ...+++|+|||||+|||+...+.|..+-.+ + ...+.++-
T Consensus 39 ~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~- 104 (360)
T KOG0990|consen 39 FLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD- 104 (360)
T ss_pred hhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc-
Confidence 445666666666665554322 222379999999999999999999987543 1 11111111
Q ss_pred hcccC-cchHHHHHHHHHhhh-------CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 532 TMWFG-ESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 532 ~~~~g-~~~~~i~~~f~~a~~-------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
.| ...+.-...|..++. ..+..+++||.|+... ..+++|-+.+..+..+.++.
T Consensus 105 ---rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~n~rF~-- 165 (360)
T KOG0990|consen 105 ---RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTANTRFA-- 165 (360)
T ss_pred ---cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhccceEEE--
Confidence 11 112333456666653 3678999999998643 34556656666555444433
Q ss_pred EecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC
Q 042193 604 GATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 649 (784)
Q Consensus 604 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~ 649 (784)
...|.|..+-|++.. ||. .+.|.+.+.......+..+.+..++
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 557999999999886 664 3456666666666666666654433
No 445
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.13 E-value=2.6e-05 Score=89.75 Aligned_cols=153 Identities=22% Similarity=0.352 Sum_probs=91.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 258 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~ 258 (784)
...+|+++.|....++++.+.+..-. .....|||+|++||||+++|+++.... ..+|+.+||..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 44578899999988887766553211 124569999999999999999986654 3578999997653
Q ss_pred hhh-----cchhH-------HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-------
Q 042193 259 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK------- 319 (784)
Q Consensus 259 ~~~-----~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 319 (784)
... .|... ..-...|+.+ ....|||||++.+.+. +...|+..+..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11000 0001123333 2468999999988532 3344555553311
Q ss_pred --cCCcEEEEEEcCCC-C------CCCHHHHhcCCcceEEEeCCCCHHHHHH
Q 042193 320 --SRAHVVVMGATNRP-N------SIDPALRRFGRFDREIDIGVPDEVGRLE 362 (784)
Q Consensus 320 --~~~~vivI~atn~~-~------~ld~al~r~~rf~~~i~i~~p~~~~R~~ 362 (784)
....+-+|++|+.+ . .+.+.|.. |+.. +.+..|...+|.+
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~ 382 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQ 382 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChh
Confidence 12356677777653 1 23333433 4433 5667777776664
No 446
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.12 E-value=6.8e-06 Score=84.36 Aligned_cols=70 Identities=29% Similarity=0.480 Sum_probs=49.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchh---HHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 222 KGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~---~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
.+++|+|+||||||+|+.+++..+ +..++.++..++........ ......+++... .+++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 489999999999999999999987 56677788777765433211 112233444432 46799999997653
No 447
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.12 E-value=9.5e-05 Score=74.88 Aligned_cols=28 Identities=50% Similarity=0.860 Sum_probs=25.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
.++.+||.||||||||.||-+++.++|.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 5789999999999999999999998863
No 448
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.11 E-value=6.1e-06 Score=88.24 Aligned_cols=108 Identities=23% Similarity=0.371 Sum_probs=68.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------------------------------h--
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS-------------------------------K-- 260 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~-------------------------------~-- 260 (784)
+.+.+++-+-|.|||||||||++|+||+.-... -+.++|.++.. +
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 455677779999999999999999999864221 23333311100 0
Q ss_pred --hc-chhH--------------------------HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHH
Q 042193 261 --LA-GESE--------------------------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 311 (784)
Q Consensus 261 --~~-g~~~--------------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 311 (784)
.. .+.. ++-|-.+..|....|.++++|| +.+..+..+..++
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~m 175 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQM 175 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHHH
Confidence 00 0011 1124566677778899999999 4444556666666
Q ss_pred HHHhhccccCCcEEEEEEcCCC
Q 042193 312 LTLMDGLKSRAHVVVMGATNRP 333 (784)
Q Consensus 312 l~~ld~~~~~~~vivI~atn~~ 333 (784)
...+..+.....+.+|-.|++.
T Consensus 176 r~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 176 RKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHHHHHHHhcCCeEEEEECCH
Confidence 6666666666677777777765
No 449
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=9e-06 Score=83.35 Aligned_cols=109 Identities=21% Similarity=0.370 Sum_probs=70.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEech---hhhh-------------------------------
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGP---EIMS------------------------------- 259 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~---~l~~------------------------------- 259 (784)
+.+..++-+.|.||+|+||||++|.||+..... .+.+++. +...
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 456678889999999999999999999865321 2333332 1000
Q ss_pred ------------------------------hhcch--hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHH
Q 042193 260 ------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRI 307 (784)
Q Consensus 260 ------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 307 (784)
.|+.+ ..++-+-.+..|..-.|.+|++|| +.+..+..+
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~v 172 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAKV 172 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHHH
Confidence 01000 011123456666777899999999 455556667
Q ss_pred HHHHHHHhhccccCCcEEEEEEcCCCC
Q 042193 308 VSQLLTLMDGLKSRAHVVVMGATNRPN 334 (784)
Q Consensus 308 ~~~Ll~~ld~~~~~~~vivI~atn~~~ 334 (784)
.+.|-.++..+..+.++.++..|++++
T Consensus 173 r~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 173 RKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 777777777776776777777787753
No 450
>PF05729 NACHT: NACHT domain
Probab=98.11 E-value=2.4e-05 Score=75.55 Aligned_cols=140 Identities=19% Similarity=0.321 Sum_probs=74.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCC---------cEEEEechhhhhhh------------cchhHHHHHHHHH-HHHhcC
Q 042193 223 GILLYGPPGTGKTLIARAVANETGA---------FFFLINGPEIMSKL------------AGESESNLRKAFE-EAEKNA 280 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~---------~~~~v~~~~l~~~~------------~g~~~~~l~~vf~-~a~~~~ 280 (784)
-++|+|+||+|||++++.++..+.. ..+.+...+..... ...........+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4799999999999999999976521 12333333322110 0111111122222 223345
Q ss_pred CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc-cccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHH
Q 042193 281 PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG-LKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359 (784)
Q Consensus 281 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 359 (784)
..++++|.+|.+...... .........+..++.. ...+.++++. +. +..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~liit--~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLIIT--SR-PRAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEEE--Ec-CChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678899999999865332 1122333444445543 2223333333 32 222222 33311222557888899999
Q ss_pred HHHHHHHHHc
Q 042193 360 RLEVFRIHTK 369 (784)
Q Consensus 360 R~~il~~~~~ 369 (784)
..++++.+..
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9998887654
No 451
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.11 E-value=8e-06 Score=93.21 Aligned_cols=155 Identities=28% Similarity=0.402 Sum_probs=90.9
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 260 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~ 260 (784)
-.|+++.|....++++++.+..-- ....+|||+|++||||+++|++|.... +.+|+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 457889999999988887764311 234689999999999999999998754 468999999765321
Q ss_pred h-----cchhHH--------HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----c--
Q 042193 261 L-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----S-- 320 (784)
Q Consensus 261 ~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~-- 320 (784)
. .|.... .-...|+.+ ....||||||+.+... +...|+..++.-. .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP-----------LQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH-----------HHHHHHHHHhcCcEEecCCCc
Confidence 1 110000 011223333 2358999999988532 3445555554211 0
Q ss_pred --CCcEEEEEEcCCCC--CCCH-HHHh--cCCcceEEEeCCCCHHHHHHHH
Q 042193 321 --RAHVVVMGATNRPN--SIDP-ALRR--FGRFDREIDIGVPDEVGRLEVF 364 (784)
Q Consensus 321 --~~~vivI~atn~~~--~ld~-al~r--~~rf~~~i~i~~p~~~~R~~il 364 (784)
...+-+|++|+..- .+.. .++. ..|+. .+.+..|...+|.+-+
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI 393 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDI 393 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHH
Confidence 12346777776541 1111 1111 11332 2466677777776543
No 452
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.11 E-value=1.2e-05 Score=80.15 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+-|+|++|||||||+|++++..
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 456788899999999999999999999865
No 453
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.09 E-value=2.8e-06 Score=79.90 Aligned_cols=85 Identities=26% Similarity=0.473 Sum_probs=54.9
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCC---cEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcC
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQA---NFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 570 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~---~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 570 (784)
...++|+|++||||+++|+++....+. +|+.+++..+. ..+++.+ ....+||+|||.+..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~--- 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP--- 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H---
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH---
Confidence 345999999999999999999997653 55555555432 4466665 345999999998753
Q ss_pred CCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 571 ASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 571 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
..+..|+..++... ..++-+|+++.
T Consensus 84 -----------~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 84 -----------EAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp -----------HHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred -----------HHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 34566666666543 22334444443
No 454
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.09 E-value=2.3e-05 Score=75.41 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=62.7
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc----------------------cCc--chHHHHHHHHHh
Q 042193 497 VLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW----------------------FGE--SEANVREIFDKA 549 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~----------------------~g~--~~~~i~~~f~~a 549 (784)
++++||||+|||+++..++... +.+.+.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 4566666554332100 000 111122334556
Q ss_pred hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC
Q 042193 550 RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV 611 (784)
Q Consensus 550 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ 611 (784)
....|.++++||+..+................+.+..++..+. ..++.+|.+++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6778899999999998754211000111222344444444443 235566666665543
No 455
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.08 E-value=1.3e-05 Score=85.43 Aligned_cols=71 Identities=27% Similarity=0.513 Sum_probs=48.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhH-HHHHHHHHHHHhcCCeEEEeehhhhh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l 292 (784)
.++|++|+||+|||||+|+.++|+++ +..+..+..++++........ ..+...++.. ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999997 566777777776554322111 1123333333 24569999998643
No 456
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.08 E-value=0.00013 Score=82.56 Aligned_cols=172 Identities=24% Similarity=0.318 Sum_probs=102.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----------CcEEEEechhhhh----------hhcchh------HHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETG----------AFFFLINGPEIMS----------KLAGES------ESNLRKAFE 274 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~----------~~~~~v~~~~l~~----------~~~g~~------~~~l~~vf~ 274 (784)
+..+.+.|-||||||..++.+.++|. ..++.|||-.+.+ .+.|+. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 34699999999999999999988652 3568888855432 122221 111222233
Q ss_pred HH-HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCcEEEEEEcCCCCCCCHHHH--hcCCcc-eE
Q 042193 275 EA-EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-SRAHVVVMGATNRPNSIDPALR--RFGRFD-RE 349 (784)
Q Consensus 275 ~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~vivI~atn~~~~ld~al~--r~~rf~-~~ 349 (784)
.+ ....++|++|||+|.|+...+ +-|.++++... .+.+++||+..|..+.....|- -..|++ .+
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQ-----------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccH-----------HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 11 224568999999999986532 23556665443 3457888888777653322221 112332 34
Q ss_pred EEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHH--HHHHHHHHHHH
Q 042193 350 IDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGA--DLAALCTEAAL 403 (784)
Q Consensus 350 i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~--dl~~l~~~a~~ 403 (784)
+.|.+.+..+..+|+...+.+.......-++-+|+.....+|. ....+|+.|+.
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 7899999999999999888776433333334444444444432 22344555543
No 457
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.08 E-value=1.1e-05 Score=85.74 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+..++.+.|.||+||||||++|.||+...
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788899999999999999999998653
No 458
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.08 E-value=1.7e-05 Score=77.55 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=25.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~ 244 (784)
+.+..+.-+.|+||+|||||||+|+|.+.
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34567888999999999999999999864
No 459
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.07 E-value=6.8e-06 Score=95.32 Aligned_cols=125 Identities=27% Similarity=0.417 Sum_probs=78.7
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 260 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~ 260 (784)
..++++.|.+..++++.+.+.... .....|||+|++||||+++|++|.... +.+++.+||..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 457789999999888877665421 235679999999999999999998875 468999999765321
Q ss_pred hc-----chhHHH----H---HHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc--c------
Q 042193 261 LA-----GESESN----L---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK--S------ 320 (784)
Q Consensus 261 ~~-----g~~~~~----l---~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~------ 320 (784)
.. |..... . ...|+. ....+|||||++.+... +...|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCCce
Confidence 10 100000 0 001221 23468999999988532 3445666554311 0
Q ss_pred -CCcEEEEEEcCCC
Q 042193 321 -RAHVVVMGATNRP 333 (784)
Q Consensus 321 -~~~vivI~atn~~ 333 (784)
...+-+|++|+..
T Consensus 328 ~~~~~riI~~s~~~ 341 (534)
T TIGR01817 328 LKVDVRLVAATNRD 341 (534)
T ss_pred EeecEEEEEeCCCC
Confidence 1246777777653
No 460
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.07 E-value=8.1e-06 Score=79.83 Aligned_cols=74 Identities=23% Similarity=0.150 Sum_probs=48.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhh--hhhc-chhHHHHHHHHHHHHhcCCeEEEeehhh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIM--SKLA-GESESNLRKAFEEAEKNAPSIIFIDEID 290 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~--~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 290 (784)
.+.++..+.|.||+|+|||||++.|++.+... -+.+++..+. .... -....+-+..+..+....|.++++||--
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 45778899999999999999999999976432 2334432210 0100 1112234455666777889999999953
No 461
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.06 E-value=1.9e-05 Score=75.42 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=27.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
++.+.++..+.|+||+|+||||+++.|..+.
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3456788889999999999999999999875
No 462
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=4e-05 Score=81.40 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=27.6
Q ss_pred hhhhc--ccCCCceeEEEcCCCCChhHHHHHHHHHh
Q 042193 485 KFEKF--GLSPSKGVLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 485 ~~~~~--~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 518 (784)
+|.++ |+.....+.++||+|+|||||.+.|.+.+
T Consensus 602 LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred hhhcccccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 55543 55666679999999999999999998875
No 463
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.06 E-value=8.2e-06 Score=92.72 Aligned_cols=169 Identities=24% Similarity=0.279 Sum_probs=96.8
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc-----cCcch-------HHHHHHHHHhhhCCCeEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 558 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~~~-------~~i~~~f~~a~~~~p~vl~ 558 (784)
...++++|++||||+++|+++...+ +.+|+.+++..+.... +|... ....-.|..+ ....||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEE
Confidence 3458999999999999999998875 3689999988763221 11000 0000012222 235899
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----C-----CCcEEEEEecCCC-------CCCCccccCCCCc
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----A-----KKTVFIIGATNRP-------DVIDPALLRPGRL 622 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----~-----~~~v~vi~aTn~~-------~~ld~allr~gRf 622 (784)
||||+.+.. .++..|+..++... + ..++-+|+||+.. ..+.+.|.. |+
T Consensus 239 l~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 302 (445)
T TIGR02915 239 LDEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI 302 (445)
T ss_pred EechhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh
Confidence 999998753 45667777765421 0 1256788888764 223343433 44
Q ss_pred ccccccCCCCHHHHH----HHHHHHhc----cCCCC----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 623 DQLIYIPLPDEASRL----QIFKACLR----KSPIS----PDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 623 ~~~i~~~~p~~~~r~----~il~~~~~----~~~~~----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
. .+.+..|...+|. .+++.+++ ..+.. .+.-+..|..+.---+-++|++++..|+..+-
T Consensus 303 ~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 303 A-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred c-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 2 2344445444443 23333332 22211 11225556555534467899999998886554
No 464
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.04 E-value=1.1e-05 Score=89.02 Aligned_cols=152 Identities=25% Similarity=0.407 Sum_probs=95.0
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh--
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS-- 259 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~-- 259 (784)
...++.|....++++++.+..- ......|||+|++||||-++||+|-... +.+|+.+||..+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567999999999998877531 1234579999999999999999998765 45899999965432
Q ss_pred -------hhcchhHHHH---HHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc-----cc----c
Q 042193 260 -------KLAGESESNL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG-----LK----S 320 (784)
Q Consensus 260 -------~~~g~~~~~l---~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~----~ 320 (784)
...|...... ...|+.|.. ..||+|||..+... +...|+..+.. +. -
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-----------~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-----------LQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-----------HHHHHHHHHHcCeeEecCCCccc
Confidence 1122111111 124444433 59999999877522 33344444431 11 1
Q ss_pred CCcEEEEEEcCCCCCCCHHHHhcC--------CcceEEEeCCCCHHHHHHHHH
Q 042193 321 RAHVVVMGATNRPNSIDPALRRFG--------RFDREIDIGVPDEVGRLEVFR 365 (784)
Q Consensus 321 ~~~vivI~atn~~~~ld~al~r~~--------rf~~~i~i~~p~~~~R~~il~ 365 (784)
+..|-||++||.. +...+.. | |+. .+.+..|...+|.+-+-
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLn-V~~i~iPpLRER~EDIp 322 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVAA-GRFREDLYYRLN-VVPLRLPPLRERKEDIP 322 (464)
T ss_pred ceeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhc-cceecCCcccccchhHH
Confidence 2467899999864 3222221 2 332 35677888777765443
No 465
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.03 E-value=2.1e-05 Score=90.67 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=82.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecccchhcccCcc--hHHHH--------HHHHHhhhCCCeEEEEecc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDEL 562 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~~--~~~i~--------~~f~~a~~~~p~vl~iDEi 562 (784)
.|++|.|+.|++||+++++++..+.. +|+.+...--....+|.. +..++ -++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 57999999999999999999999754 776654332223333322 11111 11222322 49999999
Q ss_pred chhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCC---CCCCccccCCCCccccccc
Q 042193 563 DSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP---DVIDPALLRPGRLDQLIYI 628 (784)
Q Consensus 563 d~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~---~~ld~allr~gRf~~~i~~ 628 (784)
..+ .+.+++.|+..|+... -..+.++||+-|.. ..|.++++. ||+..|.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 764 3678999999998532 12467788874432 348889999 99999999
Q ss_pred CCCCHHH
Q 042193 629 PLPDEAS 635 (784)
Q Consensus 629 ~~p~~~~ 635 (784)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 466
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=3.6e-05 Score=82.78 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=84.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCc-------------------------EEEEechhhhhhhcc-----hhHHH
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGAF-------------------------FFLINGPEIMSKLAG-----ESESN 268 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~~-------------------------~~~v~~~~l~~~~~g-----~~~~~ 268 (784)
..+..+||+||+|+|||++|+.+|+.+.+. ++.+....- ....| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 345579999999999999999999987421 222221100 00001 12345
Q ss_pred HHHHHHHHHh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcC
Q 042193 269 LRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFG 344 (784)
Q Consensus 269 l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~ 344 (784)
++.+.+.+.. ....|+++|+++.+-+ ...+.|+..++.... .+.+|.+|+.++.+.+.+++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--
Confidence 6666655542 3346888998887742 244567777776542 35566688888899999887
Q ss_pred CcceEEEeCCCCHHHHHHHHHH
Q 042193 345 RFDREIDIGVPDEVGRLEVFRI 366 (784)
Q Consensus 345 rf~~~i~i~~p~~~~R~~il~~ 366 (784)
|. ..+.++.|+.++-.+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 44 3467888988887777753
No 467
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=8.8e-05 Score=80.13 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=94.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 276 (784)
+..+||+||+|+||+++|.++|..+-+. +..+.. +-.+ ..-.-..++.+.+.+
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-~~~~--~~I~idqiR~l~~~~ 100 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP-EKGK--SSLGVDAVREVTEKL 100 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-cccc--ccCCHHHHHHHHHHH
Confidence 4579999999999999999999887321 111211 0000 001223455544443
Q ss_pred ----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 277 ----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 277 ----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
......|++||++|.+.. ...+.|+..++. ...+.++|..|+.++.+-|.+++ |.. .+.+
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred hhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 334557999999998853 345778888876 34577888888999999999998 664 3788
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcH
Q 042193 353 GVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVG 391 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~ 391 (784)
+.|+.++-.+.|... .... ......++..+.|-.+
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHH
Confidence 899888777766532 1222 1223445555665443
No 468
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.03 E-value=1.3e-05 Score=94.63 Aligned_cols=132 Identities=21% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC-------cEEEEecccchhcc---cCcchHHHHHHHHHhhhCCCeEEEEec
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFVSVKGPELLTMW---FGESEANVREIFDKARQSAPCVLFFDE 561 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------~~i~v~~~~l~~~~---~g~~~~~i~~~f~~a~~~~p~vl~iDE 561 (784)
+...++||+|+||||||.+|++++..... ++..+......... .|+.....+ .+..|.. .+++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G-aLvlAdg---GtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPG-AVVLANG---GVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCC-cEEEcCC---CeEEecc
Confidence 33446999999999999999999986542 33332222111000 010000000 1112222 4999999
Q ss_pred cchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCC-------------CCCcccc
Q 042193 562 LDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-------------VIDPALL 617 (784)
Q Consensus 562 id~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~all 617 (784)
++.+. ......|+..|+.-. -..+.-||||+|..+ .|.++++
T Consensus 566 idkms--------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 566 LDKCH--------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhhCC--------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 99864 334566666665321 124688999999741 3578999
Q ss_pred CCCCccccc-ccCCCCHHHHHHHHHHH
Q 042193 618 RPGRLDQLI-YIPLPDEASRLQIFKAC 643 (784)
Q Consensus 618 r~gRf~~~i-~~~~p~~~~r~~il~~~ 643 (784)
. |||.+. .++.|+.+.-..|-+..
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHH
Confidence 8 999664 55677776655554433
No 469
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.02 E-value=3.5e-05 Score=91.48 Aligned_cols=152 Identities=24% Similarity=0.354 Sum_probs=89.9
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhhhh
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMS 259 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---~~~~~v~~~~l~~ 259 (784)
..+|+++.|.+..++++.+.+..-. .....|||+|++||||+++|++|..... .+|+.+||..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3467889998888887766554311 2345799999999999999999988653 6899999976532
Q ss_pred -----hhcchh----HHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----c----C
Q 042193 260 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----S----R 321 (784)
Q Consensus 260 -----~~~g~~----~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~ 321 (784)
...|.. .......|+. .....||||||+.+... +...|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 111111 0000001222 23468999999988532 3344555554211 0 1
Q ss_pred CcEEEEEEcCCCCCCCHHHHhcCCcc-------eEEEeCCCCHHHHHH
Q 042193 322 AHVVVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 362 (784)
Q Consensus 322 ~~vivI~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~ 362 (784)
..+-+|++|+.. +.. +...++|. ..+.+.+|...+|.+
T Consensus 456 ~~~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 256688887753 111 11123331 135677777777754
No 470
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.02 E-value=3e-05 Score=78.40 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=51.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh--------hc---------------chhHHHHH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK--------LA---------------GESESNLR 270 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~--------~~---------------g~~~~~l~ 270 (784)
|+..+.-++|+||||||||+++..++... +...++++..++... .. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 67888889999999999999999887643 455677766431100 00 01111233
Q ss_pred HHHHHHHhcCCeEEEeehhhhhcC
Q 042193 271 KAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 271 ~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
.+........+++++||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344444555789999999998864
No 471
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.02 E-value=4.3e-06 Score=81.59 Aligned_cols=46 Identities=30% Similarity=0.531 Sum_probs=36.2
Q ss_pred hhhhhhcccCCCce--eEEEcCCCCChhHHHHHHHHH--hCCcEEEEecc
Q 042193 483 PEKFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANE--CQANFVSVKGP 528 (784)
Q Consensus 483 ~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~--~~~~~i~v~~~ 528 (784)
.+.++.++++..+| +.+.||+|||||||.+++... ...+.|.+++.
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 34566667777777 899999999999999999875 45667777774
No 472
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.01 E-value=1.2e-05 Score=85.97 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=57.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCC-CCceEEEECCCCCcHHHHHHHHHHHhCC-------cEEEEec----h
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGTGKTLIARAVANETGA-------FFFLING----P 255 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~-~~~~vLL~GppGtGKTtla~~la~~l~~-------~~~~v~~----~ 255 (784)
++.|+++.++++.+.+.... .|.. ..+.++|+|||||||||||++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999888877664322 1222 3466899999999999999999999976 6788877 4
Q ss_pred hhhhhhcchhHHHHHHHHHHH
Q 042193 256 EIMSKLAGESESNLRKAFEEA 276 (784)
Q Consensus 256 ~l~~~~~g~~~~~l~~vf~~a 276 (784)
.+.....+-.....+..|.+.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCccCCcccCCHHHHHHHHHH
Confidence 444444444555566666443
No 473
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.01 E-value=1.4e-05 Score=75.10 Aligned_cols=59 Identities=31% Similarity=0.599 Sum_probs=41.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC---cEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~---~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
...|+|+|++||||+++|++|....+. +++.++|..+. ...++.+ ....++|+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 567999999999999999999987653 34555554322 2344443 55699999999885
No 474
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.01 E-value=2.8e-05 Score=77.97 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=26.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
++.+.+++.+.|.||+|||||||+..+++..
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3456788899999999999999999999754
No 475
>PRK06851 hypothetical protein; Provisional
Probab=98.01 E-value=0.00013 Score=78.92 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=27.0
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGP 528 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~ 528 (784)
+-++|.|+||||||||++.++.++ |..+....++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 448999999999999999999876 4555555554
No 476
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.00 E-value=2.9e-05 Score=74.65 Aligned_cols=72 Identities=28% Similarity=0.426 Sum_probs=46.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----------------------hc--chhHHHHHHHHHHH
Q 042193 224 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK----------------------LA--GESESNLRKAFEEA 276 (784)
Q Consensus 224 vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~----------------------~~--g~~~~~l~~vf~~a 276 (784)
++|+||||+|||+++..++... +...+.++....... .. .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 345555554321110 00 00111122334555
Q ss_pred HhcCCeEEEeehhhhhcCC
Q 042193 277 EKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 277 ~~~~p~il~iDEid~l~~~ 295 (784)
....|.++++||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999988654
No 477
>PRK15115 response regulator GlrR; Provisional
Probab=98.00 E-value=2.6e-05 Score=88.55 Aligned_cols=163 Identities=23% Similarity=0.362 Sum_probs=98.1
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHh---------------hhCCCeE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKA---------------RQSAPCV 556 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a---------------~~~~p~v 556 (784)
..++++|++|||||++|+++.... +.+|+.+++..+..... -..+|..+ .......
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 358999999999999999998875 47899999887532111 11222211 1112358
Q ss_pred EEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C----CCcEEEEEecCCCCCCCccccCCCCcc----
Q 042193 557 LFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDVIDPALLRPGRLD---- 623 (784)
Q Consensus 557 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~---- 623 (784)
||||||+.|.. ..+..|+..++... . ..++-+|+||+.. ++..+.+ |+|.
T Consensus 232 l~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~ 294 (444)
T PRK15115 232 LFLDEIGDMPA--------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLY 294 (444)
T ss_pred EEEEccccCCH--------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHH
Confidence 99999998753 35566777765421 1 1257888888863 4444433 4552
Q ss_pred ---cccccCCCCHHHHH----HHHHHHhcc----CC-----CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 624 ---QLIYIPLPDEASRL----QIFKACLRK----SP-----ISPDVDLSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 624 ---~~i~~~~p~~~~r~----~il~~~~~~----~~-----~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
..+.+..|...+|. .+++.+++. .+ ++ +.-+..|..+.-.-+.++++++++.|+..+
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFS-TDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcC-HHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 12344455555553 233333322 11 22 222666666664457789999999887654
No 478
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.00 E-value=7.1e-05 Score=75.49 Aligned_cols=151 Identities=18% Similarity=0.294 Sum_probs=96.5
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh-C--CcEEEEecccc-------------hhcc--------cCcchHH-HHHHHHHh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC-Q--ANFVSVKGPEL-------------LTMW--------FGESEAN-VREIFDKA 549 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~-~--~~~i~v~~~~l-------------~~~~--------~g~~~~~-i~~~f~~a 549 (784)
.++++|||+|+||-|.+.++-+++ | ..-+.+....+ .+.| .|...+. +..+.+..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 569999999999999999998875 2 11111111111 1111 2333222 33444333
Q ss_pred hh---------CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCC
Q 042193 550 RQ---------SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPG 620 (784)
Q Consensus 550 ~~---------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~g 620 (784)
.+ ....|++|-|.|.|.. ..+..|-+.|+...+.- -+|..+|..+.|=+++.+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~--------------dAQ~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS-- 176 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTR--------------DAQHALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS-- 176 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhH--------------HHHHHHHHHHHHHhcCc--eEEEEecCcccchhHHhh--
Confidence 22 2357999999998753 34566677777665543 344456776677667765
Q ss_pred CcccccccCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHcCC
Q 042193 621 RLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHG 664 (784)
Q Consensus 621 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g 664 (784)
|. ..|.+|-|+.++...++...+++.++.-+.+ +..+|+.++|
T Consensus 177 RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 177 RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 55 4689999999999999999998887664433 5667776655
No 479
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.99 E-value=1.3e-05 Score=79.07 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=62.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh---------------------------hhcch--
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS---------------------------KLAGE-- 264 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~---------------------------~~~g~-- 264 (784)
+.+.++..+.|.||+|+|||||++.|++.+... -+.+++.++.. .....
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 456788899999999999999999999976432 24444432210 00000
Q ss_pred hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC
Q 042193 265 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS 335 (784)
Q Consensus 265 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ 335 (784)
...+-+..+..+....|.++++||--.-+ +......+...+..+.......+|.+|++++.
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 01122344556666789999999954332 22223344444444433212344556666543
No 480
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.99 E-value=1.5e-05 Score=81.15 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=71.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------------------------hhcchh--
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS-------------------------KLAGES-- 265 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~-------------------------~~~g~~-- 265 (784)
++.+..++.+.|+|.+||||||++|.|.+..... -+..++.++.. +|..+.
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 3456778999999999999999999999877533 24445443321 121111
Q ss_pred HHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC
Q 042193 266 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP 333 (784)
Q Consensus 266 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~ 333 (784)
.++-+-.++.|..-.|.+++.||.-+.+. -.+..|.++++..++...++-.+-.+++.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLD----------vSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALD----------VSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcc----------hhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 11224456677778899999999765542 34567777888777766555555555543
No 481
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=5.6e-05 Score=70.40 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
....++++|+||+||||++.-++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 356799999999999999999998774
No 482
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.99 E-value=5.2e-05 Score=86.78 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=99.9
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHh---------------hhCCCe
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKA---------------RQSAPC 555 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a---------------~~~~p~ 555 (784)
...+++.|++|||||++|+++...+ +.+|+.+++..+.... .-..+|... ......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 3459999999999999999999876 4699999998763211 111222211 011234
Q ss_pred EEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C----CCcEEEEEecCCC-------CCCCccccCC
Q 042193 556 VLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DVIDPALLRP 619 (784)
Q Consensus 556 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~ 619 (784)
.+|||||+.+.. .++..|+..++... . ..++-+|+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 299 (469)
T PRK10923 235 TLFLDEIGDMPL--------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH- 299 (469)
T ss_pred EEEEeccccCCH--------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH-
Confidence 899999998753 35567777776432 1 1246788888764 134455554
Q ss_pred CCc-ccccccCCCCH--HHHHHHHHHHhcc----CCCC----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 620 GRL-DQLIYIPLPDE--ASRLQIFKACLRK----SPIS----PDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 620 gRf-~~~i~~~~p~~--~~r~~il~~~~~~----~~~~----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
|| ...|.+|+... ++...+++.+++. .+.. .+.-+..|..+.---+-++|+++++.|+..+-
T Consensus 300 -~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 300 -RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred -HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 55 35555665432 3334444444432 2111 12225556655544466899999998886553
No 483
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=1e-05 Score=78.99 Aligned_cols=109 Identities=22% Similarity=0.361 Sum_probs=63.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------h---hcc---------------hhHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS-------K---LAG---------------ESESN 268 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~-------~---~~g---------------~~~~~ 268 (784)
+.+.++..+.|.||+|+|||||++.|++.+... -+.+++..+.. . +.. ....+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 456788899999999999999999999986432 23344322210 0 000 00112
Q ss_pred HHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 269 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 269 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
-+-.+..+....|.++++||--.-+ +......+..++..+.. . ..+|.+|++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSAL----------DPETEALILEALRALAK-G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhcC-C-CEEEEEecCHHHH
Confidence 2344566667789999999943322 22233444455544433 2 4555567766544
No 484
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00014 Score=77.62 Aligned_cols=150 Identities=18% Similarity=0.288 Sum_probs=92.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc---------------------EEEEe-chhhhh-h-hcchhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF---------------------FFLIN-GPEIMS-K-LAGESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~---------------------~~~v~-~~~l~~-~-~~g~~~~~l~~vf~~a 276 (784)
+..+||+||+|+||+++|.++|..+.+. +..+. .++-.+ + ...-.-..++.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4469999999999999999999876321 11111 000000 0 0001133455555544
Q ss_pred Hh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 277 EK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 277 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
.. ....|++||++|.+.. ...+.|+..++.-. .++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 2346999999998842 34567888887643 356666678889999999998 66 34788
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcH
Q 042193 353 GVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVG 391 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~ 391 (784)
..|+.++-.+.|... ... ..+...++..+.|-.+
T Consensus 170 ~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred CCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 899988777777532 111 1223355566666544
No 485
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=1.2e-06 Score=89.34 Aligned_cols=97 Identities=21% Similarity=0.275 Sum_probs=75.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-hhcchhHHHHHHHHHHHHhcCCeEEEeehhhh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS-KLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~-~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 291 (784)
++.+.+++.++|+|++|||||||++.+++.+... .+.+++..+.. ....+..+++..+||++..+.-+-.+.||+.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 3456778899999999999999999999987544 35667665542 33445566778899999988777889999999
Q ss_pred hcCCCCCCchHHHHHHHHHH
Q 042193 292 IAPKREKTNGEVERRIVSQL 311 (784)
Q Consensus 292 l~~~~~~~~~~~~~~v~~~L 311 (784)
.+.+.+....++..++...+
T Consensus 104 g~~n~g~~~~e~~~rv~~~l 123 (235)
T COG1122 104 GLENLGLPREEIEERVAEAL 123 (235)
T ss_pred chhhcCCCHHHHHHHHHHHH
Confidence 99998887777777766554
No 486
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.00023 Score=77.03 Aligned_cols=186 Identities=18% Similarity=0.268 Sum_probs=118.8
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----C-cEEEEechhhhh--
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG----A-FFFLINGPEIMS-- 259 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~----~-~~~~v~~~~l~~-- 259 (784)
..+.|-+.++..+++++..++. .+.+..+.+.|-||||||.+..-+-..+. . ..+++||.++..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4578888888888888876443 34567799999999999999886655442 2 347888864321
Q ss_pred ----hhc---------chhHHHHHHHHHHHHh-c-CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcE
Q 042193 260 ----KLA---------GESESNLRKAFEEAEK-N-APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHV 324 (784)
Q Consensus 260 ----~~~---------g~~~~~l~~vf~~a~~-~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 324 (784)
+.. ...+......|+.-.. . .+-++++||+|.|+..... ++-.|..|-. ....++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~--------vLy~lFewp~--lp~sr~ 290 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT--------VLYTLFEWPK--LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc--------eeeeehhccc--CCccee
Confidence 111 1112222333443322 2 3578899999999844321 2222222211 134578
Q ss_pred EEEEEcCCCCCCCHHHHh----cCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccc--hhhhHHHHhcCCCcH
Q 042193 325 VVMGATNRPNSIDPALRR----FGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAED--VDLERVARDTHGYVG 391 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r----~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~--~~l~~la~~t~g~~~ 391 (784)
++||..|..+.-|..|-+ .+.-...+.|++++.++-.+||+..+...+.... ..+.-.|+...+-+|
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 899999987765655533 3445667899999999999999988776654332 335667777777766
No 487
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.96 E-value=1.2e-05 Score=82.73 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=95.5
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE------EEEe
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFF------FLIN 253 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~------~~v~ 253 (784)
...+-.+.++.+.++....+.+..+. ..-.+.|+|||||+|||+...+.|..+..+. ...+
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 44555677888888887777776433 1223899999999999999999998875531 1122
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHh-------cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEE
Q 042193 254 GPEIMSKLAGESESNLRKAFEEAEK-------NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVV 326 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 326 (784)
.++-.+- + ....--..|+.+.. ..+.++++||.|.+..+ ..++|......+..+.++.
T Consensus 101 aSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-----------AQnALRRviek~t~n~rF~- 165 (360)
T KOG0990|consen 101 ASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-----------AQNALRRVIEKYTANTRFA- 165 (360)
T ss_pred ccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-----------HHHHHHHHHHHhccceEEE-
Confidence 2211110 0 11111223443332 25679999999988533 2344445555555555555
Q ss_pred EEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 327 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 327 I~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
..+|.+..+.|+++. |+.+ +.+...+..+-...+..+...
T Consensus 166 -ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 166 -TISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred -EeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhc
Confidence 456899999998876 5433 345555555555556555543
No 488
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.95 E-value=2.1e-05 Score=70.37 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=52.1
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCC
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDA 576 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~ 576 (784)
|.|+||||+|||++|+.|+..+...+-.-....+.. . ..-...|.....+ .++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~---~---~~~~~~w~gY~~q--~vvi~DD~~~~~~--------- 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT---R---NPGDKFWDGYQGQ--PVVIIDDFGQDND--------- 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe---C---CCccchhhccCCC--cEEEEeecCcccc---------
Confidence 579999999999999999987642221111111110 0 0011233333322 4899999876432
Q ss_pred CCchHHHHHHHHHHhhCCC---------C----CCcEEEEEecCC
Q 042193 577 GGAADRVLNQLLTEMDGMN---------A----KKTVFIIGATNR 608 (784)
Q Consensus 577 ~~~~~~~l~~ll~~ld~~~---------~----~~~v~vi~aTn~ 608 (784)
.. ......++++.++... . -...+||+|||.
T Consensus 64 ~~-~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 64 GY-NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cc-chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 11 2335677777776532 1 122678888883
No 489
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.95 E-value=1.7e-05 Score=74.99 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=48.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhhhc-chhHHHHHHHHHHHHhcCCeEEEeehhhh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLA-GESESNLRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~ 291 (784)
+.+.+++.+.|.||+|+|||||++++++.+... -+.+++........ -.....-+..+..+....|.++++||-..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456788899999999999999999999986432 13333311000000 01112334455666778899999999543
No 490
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00023 Score=75.95 Aligned_cols=127 Identities=14% Similarity=0.224 Sum_probs=86.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc-----------------------EEEEechhhhhhhcchhHHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF-----------------------FFLINGPEIMSKLAGESESNLRKAFEEAE 277 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~-----------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~ 277 (784)
+..+||+||.|+||+++|+.+|+.+.+. ++.+.... .++ .-.-..++.+.+.+.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHHHHh
Confidence 4579999999999999999999876321 11221100 000 012234555444332
Q ss_pred ----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeC
Q 042193 278 ----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIG 353 (784)
Q Consensus 278 ----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~ 353 (784)
.....|++||++|.+.. ...+.|+..++. ...++++|..|+.++.+-|.+++ |.. .+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEeCC
Confidence 23457999999998852 245678888876 34567888888999999999998 663 57899
Q ss_pred CCCHHHHHHHHHH
Q 042193 354 VPDEVGRLEVFRI 366 (784)
Q Consensus 354 ~p~~~~R~~il~~ 366 (784)
.|+.++-.+.|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888777754
No 491
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.93 E-value=3.7e-05 Score=76.76 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+|.++++.+..|+||+|+|||||++.++++..
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 34678899999999999999999999998753
No 492
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.93 E-value=3.2e-05 Score=75.76 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=62.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh--------h--hcc---------------hhHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS--------K--LAG---------------ESESN 268 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~--------~--~~g---------------~~~~~ 268 (784)
+.+.++..+.|.||+|+|||||++.|++.+... -+.+++.++.. . +.. ....+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 445678889999999999999999999976422 23344322110 0 000 11223
Q ss_pred HHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC
Q 042193 269 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN 334 (784)
Q Consensus 269 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~ 334 (784)
-+..+..+....|.++++||--.-+ +......+...+..+... ...+|.+|++++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 3455666777889999999954332 222333444444444332 334555666543
No 493
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.92 E-value=3.5e-05 Score=75.79 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=50.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh------h---hcc------------------hh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS------K---LAG------------------ES 265 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~------~---~~g------------------~~ 265 (784)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++.. . +.. ..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3456788899999999999999999999986421 23444432210 0 000 00
Q ss_pred HHHHHHHHHHHHhcCCeEEEeehhhh
Q 042193 266 ESNLRKAFEEAEKNAPSIIFIDEIDS 291 (784)
Q Consensus 266 ~~~l~~vf~~a~~~~p~il~iDEid~ 291 (784)
..+-+..+..+....|.++++||...
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~ 127 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTV 127 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 12334556667778899999999543
No 494
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.91 E-value=0.00018 Score=79.12 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=92.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc-------hhcccCcchH---HHH---HHHHHh------------hh
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL-------LTMWFGESEA---NVR---EIFDKA------------RQ 551 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l-------~~~~~g~~~~---~i~---~~f~~a------------~~ 551 (784)
+||+||+||||||.++.|+.+++..++....+-. .+.-.+.... .+. .....+ ..
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~ 192 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLR 192 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccc
Confidence 8899999999999999999999987776652211 1100011100 011 011111 12
Q ss_pred CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCC------Ccccc
Q 042193 552 SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPG------RLDQL 625 (784)
Q Consensus 552 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~g------Rf~~~ 625 (784)
..+.+|++||+=..+.. . ..+.+...|.++-......-||+|.-.+.++..++-.+.|- |+ ..
T Consensus 193 ~~~~liLveDLPn~~~~---------d-~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~ 261 (634)
T KOG1970|consen 193 TDKKLILVEDLPNQFYR---------D-DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SN 261 (634)
T ss_pred cCceEEEeeccchhhhh---------h-hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ce
Confidence 23669999999766542 0 23344555555443333333444433444444443322211 44 36
Q ss_pred cccCCCCHHHHHHHHHHHhccC--CCCC-c-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 626 IYIPLPDEASRLQIFKACLRKS--PISP-D-VDLSALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 626 i~~~~p~~~~r~~il~~~~~~~--~~~~-~-~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
|.|.+-...-.+..|+..++.. ++.. . -+...+-.++.| +++||+..+....+.+..
T Consensus 262 IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 262 ISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSSSK 322 (634)
T ss_pred EeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhccc
Confidence 7777777766677776666433 2221 0 112223333333 334999888887777643
No 495
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.91 E-value=1.9e-05 Score=86.00 Aligned_cols=128 Identities=27% Similarity=0.391 Sum_probs=82.5
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 042193 184 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 260 (784)
Q Consensus 184 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~ 260 (784)
....+|+|....+.++.+.++.- ......|||.|.+||||..+||+|-... ..+++.+||..+-..
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 35668999999999888877651 1235689999999999999999998765 467999999655332
Q ss_pred hc-chhHHHHHHHHHHHHhc--------CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc-----ccc----CC
Q 042193 261 LA-GESESNLRKAFEEAEKN--------APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG-----LKS----RA 322 (784)
Q Consensus 261 ~~-g~~~~~l~~vf~~a~~~--------~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~~----~~ 322 (784)
.. .+.-...+..|.-|... ....||+|||..+... +...|+..+.. +.+ +.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~-----------lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA-----------LQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH-----------HHHHHHHHHhhcceeecCCCceeEE
Confidence 11 01111223333333322 2358999999776432 33445554432 111 24
Q ss_pred cEEEEEEcCCC
Q 042193 323 HVVVMGATNRP 333 (784)
Q Consensus 323 ~vivI~atn~~ 333 (784)
.|-||+|||+-
T Consensus 358 DVRiIAATNRD 368 (550)
T COG3604 358 DVRVIAATNRD 368 (550)
T ss_pred EEEEEeccchh
Confidence 68899999973
No 496
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.90 E-value=4.1e-05 Score=86.43 Aligned_cols=125 Identities=23% Similarity=0.361 Sum_probs=73.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcE--EEEechhhhh------------------hhcchhHH-HH-------
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETGAFF--FLINGPEIMS------------------KLAGESES-NL------- 269 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~~~~--~~v~~~~l~~------------------~~~g~~~~-~l------- 269 (784)
+..+.+++|+|||||||||+++.+++.+...- ..+.+..+.+ .....+.. .+
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 34567899999999999999999998765321 1122222111 00000000 01
Q ss_pred HHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----------cCCcEEEEEEcCCCC----
Q 042193 270 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----------SRAHVVVMGATNRPN---- 334 (784)
Q Consensus 270 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~atn~~~---- 334 (784)
...+..|. ..++|+||++.+. ..+.+.|++.|+.-. ...++.+|+++|+..
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11223332 3599999997653 345566666663211 134688999999742
Q ss_pred -----------------CCCHHHHhcCCcceEEEeCCCCHH
Q 042193 335 -----------------SIDPALRRFGRFDREIDIGVPDEV 358 (784)
Q Consensus 335 -----------------~ld~al~r~~rf~~~i~i~~p~~~ 358 (784)
.+...+.. ||+..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24445544 89999999888765
No 497
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.90 E-value=1.1e-05 Score=63.73 Aligned_cols=35 Identities=34% Similarity=0.586 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 042193 712 DEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQ 746 (784)
Q Consensus 712 ~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 746 (784)
++|+++||++||++++||||+++|.+|++|.++|+
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 37999999999999999999999999999999985
No 498
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.90 E-value=2.6e-05 Score=81.86 Aligned_cols=139 Identities=22% Similarity=0.294 Sum_probs=74.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcE---EEEechhhhhhhcchhHHHHHHHHHHH-----------HhcCCeEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAGESESNLRKAFEEA-----------EKNAPSIIF 285 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~---~~v~~~~l~~~~~g~~~~~l~~vf~~a-----------~~~~p~il~ 285 (784)
.+.++||+||+|||||++++..-..+...- ..++.+.. .....+..+++.. ......++|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 477999999999999999988776664332 23333221 1122232222221 112347999
Q ss_pred eehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-------cCCcEEEEEEcCCCC---CCCHHHHhcCCcceEEEeCCC
Q 042193 286 IDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-------SRAHVVVMGATNRPN---SIDPALRRFGRFDREIDIGVP 355 (784)
Q Consensus 286 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------~~~~vivI~atn~~~---~ld~al~r~~rf~~~i~i~~p 355 (784)
+||+..-.++...... .-.++.|++..-.-+. .-..+.++++++++. .+++.+.| .-..+.++.|
T Consensus 106 iDDlN~p~~d~ygtq~--~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r---~f~i~~~~~p 180 (272)
T PF12775_consen 106 IDDLNMPQPDKYGTQP--PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR---HFNILNIPYP 180 (272)
T ss_dssp EETTT-S---TTS--H--HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT---TEEEEE----
T ss_pred ecccCCCCCCCCCCcC--HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh---heEEEEecCC
Confidence 9999876655433222 1234444443221111 113677888888653 34555554 4456889999
Q ss_pred CHHHHHHHHHHHHc
Q 042193 356 DEVGRLEVFRIHTK 369 (784)
Q Consensus 356 ~~~~R~~il~~~~~ 369 (784)
+.+.-..|+...+.
T Consensus 181 ~~~sl~~If~~il~ 194 (272)
T PF12775_consen 181 SDESLNTIFSSILQ 194 (272)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh
Confidence 99988888876543
No 499
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.90 E-value=3.2e-05 Score=81.94 Aligned_cols=72 Identities=39% Similarity=0.555 Sum_probs=48.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhhhcch
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGE 264 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~--~~~~~v~~~~l~~~~~g~ 264 (784)
+.++|+.++-+..--++++- +. +--.++++||.||||||||.||-++|++|| .||+.++++++.+.....
T Consensus 24 ~GlVGQ~~AReAagiiv~mI-------k~-~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI-------KE-GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH-------HT-T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred ccccChHHHHHHHHHHHHHH-------hc-ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 46888887766654344331 11 223578999999999999999999999997 689999999998766544
Q ss_pred hH
Q 042193 265 SE 266 (784)
Q Consensus 265 ~~ 266 (784)
++
T Consensus 96 TE 97 (398)
T PF06068_consen 96 TE 97 (398)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 500
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.89 E-value=4.2e-05 Score=87.42 Aligned_cols=170 Identities=20% Similarity=0.292 Sum_probs=98.2
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc-----cCcch----HHH---HHHHHHhhhCCCeEEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW-----FGESE----ANV---REIFDKARQSAPCVLFF 559 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~~~----~~i---~~~f~~a~~~~p~vl~i 559 (784)
..+++.|.+||||+++|+++.... +.+|+.+++..+...+ +|... ... ...|.. .....|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 234 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFL 234 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEE
Confidence 458999999999999999998875 4689999987663221 11100 000 001222 22468999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C----CCcEEEEEecCCC-------CCCCccccCCCCcc
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DVIDPALLRPGRLD 623 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~gRf~ 623 (784)
|||+.+.. .++..|+..++... + ..++-||++|+.. ..+.+.|.. |+.
T Consensus 235 ~ei~~l~~--------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~ 298 (463)
T TIGR01818 235 DEIGDMPL--------------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN 298 (463)
T ss_pred EchhhCCH--------------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC
Confidence 99998753 34566666665321 0 1246788888764 123334443 443
Q ss_pred -cccccCCCC--HHHHHHHHHHHhcc----CCCC----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 042193 624 -QLIYIPLPD--EASRLQIFKACLRK----SPIS----PDVDLSALARYTHGFSGADITEICQRACKYAIR 683 (784)
Q Consensus 624 -~~i~~~~p~--~~~r~~il~~~~~~----~~~~----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 683 (784)
..|++|+.. .++...+++.+++. .+.. .+.-+..|.++.---+-++|++++..|+..+-.
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 356666654 34445555544432 2111 122245555543223458999999998876643
Done!