Query 042193
Match_columns 784
No_of_seqs 674 out of 5067
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 05:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1E-131 4E-136 1159.6 49.4 783 1-784 18-806 (806)
2 1ypw_A Transitional endoplasmi 100.0 3E-105 9E-110 957.1 36.6 780 1-784 18-806 (806)
3 3hu3_A Transitional endoplasmi 100.0 6.5E-62 2.2E-66 548.9 46.8 468 1-468 18-485 (489)
4 4b4t_J 26S protease regulatory 100.0 4E-55 1.4E-59 472.8 21.9 274 443-741 131-404 (405)
5 4b4t_I 26S protease regulatory 100.0 5E-53 1.7E-57 456.7 21.3 261 450-735 172-432 (437)
6 4b4t_L 26S protease subunit RP 100.0 6E-52 2.1E-56 455.9 25.0 269 447-740 168-436 (437)
7 4b4t_H 26S protease regulatory 100.0 7.7E-52 2.6E-56 451.8 22.9 266 451-741 200-466 (467)
8 4b4t_M 26S protease regulatory 100.0 2.4E-51 8.2E-56 450.8 24.9 258 450-732 171-428 (434)
9 4b4t_K 26S protease regulatory 100.0 3.9E-51 1.3E-55 449.0 21.1 263 451-738 163-427 (428)
10 3cf0_A Transitional endoplasmi 100.0 2.7E-44 9.1E-49 383.9 26.9 297 447-746 2-301 (301)
11 4b4t_J 26S protease regulatory 100.0 3.2E-44 1.1E-48 387.8 26.4 248 180-444 141-391 (405)
12 4b4t_I 26S protease regulatory 100.0 2.8E-43 9.6E-48 380.6 22.7 249 180-445 175-426 (437)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-42 5.5E-47 373.1 24.9 292 452-749 4-322 (322)
14 4b4t_M 26S protease regulatory 100.0 2.4E-42 8.3E-47 379.3 24.9 251 180-447 174-427 (434)
15 4b4t_H 26S protease regulatory 100.0 4.2E-42 1.4E-46 375.2 26.0 246 180-442 202-450 (467)
16 3cf2_A TER ATPase, transitiona 100.0 7.8E-43 2.7E-47 409.0 21.6 284 453-747 197-491 (806)
17 4b4t_L 26S protease subunit RP 100.0 2E-42 6.8E-47 380.3 23.3 249 180-445 174-425 (437)
18 2x8a_A Nuclear valosin-contain 100.0 3.8E-42 1.3E-46 361.1 20.4 266 453-735 3-273 (274)
19 4b4t_K 26S protease regulatory 100.0 2.7E-41 9.2E-46 370.9 26.3 245 180-441 165-413 (428)
20 3eie_A Vacuolar protein sortin 100.0 6.9E-41 2.4E-45 361.2 21.7 294 450-749 8-321 (322)
21 2qp9_X Vacuolar protein sortin 100.0 4.4E-40 1.5E-44 358.9 23.8 293 451-749 42-354 (355)
22 2zan_A Vacuolar protein sortin 100.0 1.3E-39 4.5E-44 365.4 18.3 293 451-749 125-444 (444)
23 2ce7_A Cell division protein F 100.0 6.3E-36 2.2E-40 334.0 23.4 249 454-728 10-258 (476)
24 1lv7_A FTSH; alpha/beta domain 100.0 1.1E-34 3.9E-39 302.5 26.4 249 454-728 6-254 (257)
25 3h4m_A Proteasome-activating n 100.0 4.2E-35 1.4E-39 310.6 22.5 271 453-748 10-282 (285)
26 3d8b_A Fidgetin-like protein 1 100.0 3.9E-35 1.3E-39 320.4 20.9 277 452-747 76-355 (357)
27 3b9p_A CG5977-PA, isoform A; A 100.0 4.2E-35 1.4E-39 312.6 20.2 278 452-748 13-294 (297)
28 2x8a_A Nuclear valosin-contain 100.0 1.6E-34 5.5E-39 303.1 22.9 262 181-448 4-270 (274)
29 2dhr_A FTSH; AAA+ protein, hex 100.0 2.2E-34 7.5E-39 323.4 21.8 265 455-745 26-299 (499)
30 3hu3_A Transitional endoplasmi 100.0 7.1E-35 2.4E-39 328.6 16.4 264 455-731 199-464 (489)
31 1ixz_A ATP-dependent metallopr 100.0 1.1E-33 3.8E-38 294.5 22.2 247 451-723 7-253 (254)
32 3vfd_A Spastin; ATPase, microt 100.0 1.9E-33 6.6E-38 311.0 24.1 280 450-748 105-387 (389)
33 1r6b_X CLPA protein; AAA+, N-t 100.0 5E-33 1.7E-37 334.0 28.0 438 181-687 180-721 (758)
34 3qwz_A Transitional endoplasmi 100.0 3.3E-33 1.1E-37 274.8 19.5 190 2-191 22-211 (211)
35 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.7E-32 5.8E-37 294.9 26.5 227 181-410 6-235 (322)
36 3pxi_A Negative regulator of g 100.0 3.7E-32 1.3E-36 325.9 29.9 444 181-686 174-729 (758)
37 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.8E-33 9.5E-38 292.7 15.8 249 455-729 1-252 (262)
38 3cf0_A Transitional endoplasmi 100.0 1.6E-32 5.6E-37 292.7 21.1 266 181-446 9-285 (301)
39 1iy2_A ATP-dependent metallopr 100.0 4.6E-32 1.6E-36 286.1 22.6 245 453-723 33-277 (278)
40 3eie_A Vacuolar protein sortin 100.0 1.2E-31 4.1E-36 288.9 23.4 266 180-448 11-304 (322)
41 2qp9_X Vacuolar protein sortin 100.0 3.3E-31 1.1E-35 288.8 24.3 264 181-447 45-336 (355)
42 2r62_A Cell division protease 100.0 1.9E-33 6.3E-38 295.2 4.1 255 453-733 4-260 (268)
43 1qvr_A CLPB protein; coiled co 100.0 1.4E-30 4.9E-35 315.4 27.0 458 181-688 164-826 (854)
44 2ce7_A Cell division protein F 100.0 1E-30 3.5E-35 292.0 22.0 246 181-444 10-258 (476)
45 3tiw_A Transitional endoplasmi 100.0 2E-30 6.8E-35 250.5 20.3 168 2-169 19-186 (187)
46 2zan_A Vacuolar protein sortin 100.0 3.2E-30 1.1E-34 289.2 19.6 227 181-410 128-357 (444)
47 3h4m_A Proteasome-activating n 100.0 6.7E-29 2.3E-33 262.9 24.6 245 181-442 11-258 (285)
48 1lv7_A FTSH; alpha/beta domain 100.0 8.4E-29 2.9E-33 258.1 24.6 244 181-442 6-252 (257)
49 2dhr_A FTSH; AAA+ protein, hex 100.0 2.6E-29 8.9E-34 282.2 18.3 246 182-445 26-274 (499)
50 1ypw_A Transitional endoplasmi 100.0 1.1E-28 3.8E-33 295.1 20.8 265 454-729 198-462 (806)
51 1ixz_A ATP-dependent metallopr 100.0 1.6E-27 5.6E-32 247.8 25.6 227 181-408 10-239 (254)
52 2qz4_A Paraplegin; AAA+, SPG7, 100.0 5.9E-28 2E-32 252.2 18.8 243 183-443 2-250 (262)
53 3b9p_A CG5977-PA, isoform A; A 100.0 1.7E-27 5.8E-32 253.7 20.2 260 181-448 15-278 (297)
54 3d8b_A Fidgetin-like protein 1 99.9 6.1E-27 2.1E-31 255.6 23.7 259 181-447 78-339 (357)
55 1iy2_A ATP-dependent metallopr 99.9 2.8E-26 9.5E-31 241.8 27.5 226 182-408 35-263 (278)
56 2c9o_A RUVB-like 1; hexameric 99.9 1.1E-27 3.7E-32 270.1 9.0 360 183-726 33-437 (456)
57 3vfd_A Spastin; ATPase, microt 99.9 5.9E-26 2E-30 251.0 21.8 258 180-445 108-368 (389)
58 2r62_A Cell division protease 99.9 7E-28 2.4E-32 252.7 1.7 249 181-447 5-258 (268)
59 3t15_A Ribulose bisphosphate c 99.9 4.3E-26 1.5E-30 241.7 12.1 176 490-672 32-222 (293)
60 1g41_A Heat shock protein HSLU 99.9 5.1E-24 1.7E-28 234.3 19.4 389 187-738 15-442 (444)
61 1cz4_A VCP-like ATPase; double 99.9 7.6E-23 2.6E-27 198.5 17.7 161 6-173 6-178 (185)
62 2c9o_A RUVB-like 1; hexameric 99.9 2.4E-25 8.3E-30 250.9 -2.2 205 454-676 31-262 (456)
63 3cmw_A Protein RECA, recombina 99.9 1.2E-24 4.2E-29 270.7 2.4 155 454-609 1014-1218(1706)
64 3t15_A Ribulose bisphosphate c 99.9 3.4E-22 1.2E-26 211.7 14.7 174 217-396 32-222 (293)
65 3syl_A Protein CBBX; photosynt 99.8 1.1E-20 3.6E-25 202.2 13.0 216 459-687 30-268 (309)
66 3uk6_A RUVB-like 2; hexameric 99.8 1.5E-19 5E-24 198.3 14.0 234 455-740 39-345 (368)
67 1g41_A Heat shock protein HSLU 99.8 8.3E-21 2.8E-25 208.8 3.6 169 460-640 15-188 (444)
68 3m6a_A ATP-dependent protease 99.8 1.6E-19 5.5E-24 207.0 7.3 231 456-727 77-342 (543)
69 1d2n_A N-ethylmaleimide-sensit 99.8 4E-18 1.4E-22 178.7 14.3 177 490-678 60-246 (272)
70 1ofh_A ATP-dependent HSL prote 99.8 3.1E-18 1E-22 182.9 12.9 245 460-727 15-300 (310)
71 3pfi_A Holliday junction ATP-d 99.7 4.1E-17 1.4E-21 176.6 19.3 194 456-682 25-235 (338)
72 3syl_A Protein CBBX; photosynt 99.7 3.1E-17 1.1E-21 175.2 17.8 211 188-408 32-265 (309)
73 3hws_A ATP-dependent CLP prote 99.7 4.5E-18 1.5E-22 186.1 11.2 222 462-685 17-326 (363)
74 1wlf_A PEX1, peroxisome biogen 99.7 2.7E-17 9.2E-22 158.6 13.8 157 7-168 13-176 (179)
75 1hqc_A RUVB; extended AAA-ATPa 99.7 1.5E-16 5.1E-21 171.0 18.3 193 457-681 9-218 (324)
76 2z4s_A Chromosomal replication 99.7 7.7E-17 2.6E-21 180.1 14.9 193 494-728 130-334 (440)
77 2v1u_A Cell division control p 99.7 1.5E-15 5E-20 167.1 21.3 237 460-743 19-301 (387)
78 3pvs_A Replication-associated 99.7 2.3E-16 7.9E-21 176.0 13.2 208 457-729 23-247 (447)
79 1l8q_A Chromosomal replication 99.7 5.9E-16 2E-20 166.5 15.8 170 493-680 36-214 (324)
80 3cmw_A Protein RECA, recombina 99.7 3.4E-16 1.2E-20 195.4 15.8 149 183-332 1016-1217(1706)
81 1um8_A ATP-dependent CLP prote 99.7 3.2E-16 1.1E-20 172.2 12.4 245 460-725 21-364 (376)
82 3m6a_A ATP-dependent protease 99.6 5.5E-16 1.9E-20 177.7 13.0 165 186-368 80-266 (543)
83 1d2n_A N-ethylmaleimide-sensit 99.6 2E-15 6.9E-20 158.0 15.9 195 186-389 32-229 (272)
84 1ofh_A ATP-dependent HSL prote 99.6 5.7E-15 2E-19 157.4 18.9 215 187-403 15-271 (310)
85 1g8p_A Magnesium-chelatase 38 99.6 2.6E-15 8.9E-20 163.1 15.5 216 454-726 18-322 (350)
86 1r6b_X CLPA protein; AAA+, N-t 99.6 4.1E-15 1.4E-19 178.3 18.3 242 457-744 183-455 (758)
87 1in4_A RUVB, holliday junction 99.6 2.7E-14 9.1E-19 154.0 22.7 230 458-745 23-272 (334)
88 3pfi_A Holliday junction ATP-d 99.6 3.2E-14 1.1E-18 153.8 22.4 195 180-404 22-233 (338)
89 3uk6_A RUVB-like 2; hexameric 99.6 1.6E-14 5.6E-19 158.0 19.8 200 185-408 42-313 (368)
90 3bos_A Putative DNA replicatio 99.6 4.4E-15 1.5E-19 151.9 13.8 181 493-724 51-241 (242)
91 3te6_A Regulatory protein SIR3 99.6 4.7E-15 1.6E-19 156.8 13.5 179 492-688 43-293 (318)
92 1sxj_A Activator 1 95 kDa subu 99.6 2.5E-15 8.7E-20 171.6 12.3 201 455-677 34-252 (516)
93 4fcw_A Chaperone protein CLPB; 99.6 1.5E-15 5.1E-20 162.2 9.3 209 460-688 17-285 (311)
94 2qby_B CDC6 homolog 3, cell di 99.6 1.6E-14 5.3E-19 159.0 17.2 193 460-681 20-252 (384)
95 3cmu_A Protein RECA, recombina 99.6 2.4E-15 8.4E-20 189.3 11.7 173 437-609 655-869 (2050)
96 2chg_A Replication factor C sm 99.6 3.2E-14 1.1E-18 143.2 17.6 201 455-724 12-224 (226)
97 3hws_A ATP-dependent CLP prote 99.6 3.4E-14 1.2E-18 155.2 18.8 219 188-408 16-325 (363)
98 2r44_A Uncharacterized protein 99.6 5.9E-15 2E-19 159.1 12.3 155 460-647 27-201 (331)
99 3u61_B DNA polymerase accessor 99.6 1.4E-14 4.9E-19 155.6 14.9 185 456-678 22-220 (324)
100 1jbk_A CLPB protein; beta barr 99.6 2.8E-15 9.7E-20 147.3 8.5 158 457-640 19-194 (195)
101 3pxg_A Negative regulator of g 99.6 9.4E-15 3.2E-19 164.7 13.6 184 457-681 177-385 (468)
102 1njg_A DNA polymerase III subu 99.6 4E-14 1.4E-18 144.5 17.0 184 457-678 20-232 (250)
103 1jbk_A CLPB protein; beta barr 99.6 1.2E-14 4E-19 142.9 12.4 161 181-364 16-194 (195)
104 4akg_A Glutathione S-transfera 99.6 1.1E-13 3.8E-18 180.3 24.4 327 220-562 1266-1676(2695)
105 2qby_A CDC6 homolog 1, cell di 99.6 7.2E-14 2.5E-18 153.4 19.1 201 459-683 19-254 (386)
106 1l8q_A Chromosomal replication 99.5 4.1E-13 1.4E-17 144.2 21.2 192 184-402 8-212 (324)
107 1qvr_A CLPB protein; coiled co 99.5 3E-14 1E-18 172.5 13.7 201 456-682 166-393 (854)
108 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.2E-14 7.4E-19 161.4 11.1 173 495-685 42-270 (500)
109 1hqc_A RUVB; extended AAA-ATPa 99.5 1.6E-13 5.3E-18 147.4 17.4 193 180-401 5-214 (324)
110 3pxi_A Negative regulator of g 99.5 1.9E-14 6.4E-19 172.4 11.1 184 457-681 177-385 (758)
111 3pxg_A Negative regulator of g 99.5 8.1E-14 2.8E-18 157.0 15.4 186 181-404 174-384 (468)
112 1fnn_A CDC6P, cell division co 99.5 2.9E-13 1E-17 148.9 19.4 201 459-684 16-257 (389)
113 3cmu_A Protein RECA, recombina 99.5 2.1E-13 7.3E-18 171.9 18.9 118 490-607 1423-1562(2050)
114 1sxj_D Activator 1 41 kDa subu 99.5 2.6E-13 8.8E-18 147.4 15.6 188 455-681 32-242 (353)
115 2p65_A Hypothetical protein PF 99.5 2.2E-14 7.6E-19 140.3 5.9 150 458-632 20-187 (187)
116 2p65_A Hypothetical protein PF 99.5 9.6E-14 3.3E-18 135.8 10.3 155 180-356 15-187 (187)
117 2z4s_A Chromosomal replication 99.5 1E-12 3.6E-17 146.6 18.9 172 221-405 130-313 (440)
118 2v1u_A Cell division control p 99.5 1.7E-12 5.7E-17 142.6 19.8 201 186-405 18-256 (387)
119 3u61_B DNA polymerase accessor 99.5 7.6E-13 2.6E-17 142.1 16.6 180 179-392 18-211 (324)
120 1um8_A ATP-dependent CLP prote 99.4 1.6E-12 5.5E-17 142.6 18.8 218 188-407 22-341 (376)
121 4fcw_A Chaperone protein CLPB; 99.4 2E-12 7E-17 137.7 18.7 201 187-407 17-280 (311)
122 1sxj_B Activator 1 37 kDa subu 99.4 1.1E-12 3.7E-17 140.5 16.0 184 456-678 17-213 (323)
123 1sxj_A Activator 1 95 kDa subu 99.4 5.3E-13 1.8E-17 152.4 14.1 197 179-390 31-245 (516)
124 2chg_A Replication factor C sm 99.4 9.5E-12 3.3E-16 125.0 21.7 175 180-390 10-197 (226)
125 3bos_A Putative DNA replicatio 99.4 5E-12 1.7E-16 129.0 19.8 187 184-405 25-224 (242)
126 3pvs_A Replication-associated 99.4 2.6E-12 8.8E-17 143.2 18.8 185 179-402 18-219 (447)
127 3te6_A Regulatory protein SIR3 99.4 9.5E-13 3.2E-17 139.1 14.1 159 189-370 22-213 (318)
128 2chq_A Replication factor C sm 99.4 1.1E-12 3.8E-17 140.1 14.9 188 456-678 13-208 (319)
129 1jr3_A DNA polymerase III subu 99.4 1.9E-12 6.6E-17 141.6 15.7 185 457-679 13-226 (373)
130 3f9v_A Minichromosome maintena 99.4 1.2E-13 4.2E-18 159.5 6.3 164 460-646 295-492 (595)
131 2qby_B CDC6 homolog 3, cell di 99.4 9.9E-12 3.4E-16 136.5 20.8 189 187-402 20-249 (384)
132 1iqp_A RFCS; clamp loader, ext 99.4 3.7E-12 1.3E-16 136.5 17.0 189 455-678 20-216 (327)
133 1njg_A DNA polymerase III subu 99.4 1E-11 3.6E-16 126.4 18.0 188 179-401 15-231 (250)
134 1sxj_E Activator 1 40 kDa subu 99.4 3.5E-12 1.2E-16 138.6 15.0 187 456-679 10-242 (354)
135 3aji_B S6C, proteasome (prosom 99.4 4.3E-13 1.5E-17 113.0 5.9 82 632-739 2-83 (83)
136 3vlf_B 26S protease regulatory 99.4 1.1E-12 3.7E-17 111.5 8.0 86 632-742 2-88 (88)
137 2bjv_A PSP operon transcriptio 99.3 1.1E-12 3.8E-17 136.5 8.9 194 458-681 4-240 (265)
138 2qby_A CDC6 homolog 1, cell di 99.3 3.6E-11 1.2E-15 131.8 21.1 200 185-405 18-252 (386)
139 2r44_A Uncharacterized protein 99.3 1E-11 3.5E-16 133.7 16.3 153 185-370 25-200 (331)
140 1fnn_A CDC6P, cell division co 99.3 3.6E-11 1.2E-15 132.1 21.0 198 186-406 16-255 (389)
141 1in4_A RUVB, holliday junction 99.3 7.6E-11 2.6E-15 126.9 21.8 195 181-405 19-230 (334)
142 2krk_A 26S protease regulatory 99.3 2.5E-12 8.5E-17 108.5 7.8 78 627-729 7-84 (86)
143 1sxj_D Activator 1 41 kDa subu 99.3 2.1E-11 7.2E-16 132.2 17.1 178 179-391 29-229 (353)
144 1g8p_A Magnesium-chelatase 38 99.3 3.1E-11 1.1E-15 130.7 17.7 160 181-366 18-230 (350)
145 1iqp_A RFCS; clamp loader, ext 99.3 9.4E-11 3.2E-15 125.5 21.2 181 179-390 17-205 (327)
146 3kw6_A 26S protease regulatory 99.3 4.5E-12 1.5E-16 105.3 8.0 75 629-728 1-75 (78)
147 1ojl_A Transcriptional regulat 99.3 2.4E-12 8.1E-17 136.6 7.9 169 493-681 24-235 (304)
148 1sxj_B Activator 1 37 kDa subu 99.3 5.2E-11 1.8E-15 127.3 18.3 178 179-392 13-204 (323)
149 2chq_A Replication factor C sm 99.3 2E-11 6.8E-16 130.3 14.9 180 180-390 10-197 (319)
150 1sxj_C Activator 1 40 kDa subu 99.2 7E-12 2.4E-16 135.5 8.5 171 456-664 21-203 (340)
151 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 5.6E-11 1.9E-15 133.6 15.7 151 188-368 23-196 (500)
152 1sxj_E Activator 1 40 kDa subu 99.2 1E-10 3.4E-15 127.0 16.7 178 180-390 7-230 (354)
153 1a5t_A Delta prime, HOLB; zinc 99.2 1.6E-10 5.5E-15 124.3 17.7 159 492-677 22-208 (334)
154 1jr3_A DNA polymerase III subu 99.2 2.5E-10 8.7E-15 124.6 19.1 188 179-401 8-224 (373)
155 3n70_A Transport activator; si 99.2 1E-11 3.5E-16 116.6 6.2 90 494-609 24-116 (145)
156 2dzn_B 26S protease regulatory 99.2 4.8E-12 1.6E-16 106.1 3.1 81 634-739 1-82 (82)
157 3k1j_A LON protease, ATP-depen 99.2 2.2E-11 7.4E-16 141.7 9.4 229 453-739 34-387 (604)
158 4akg_A Glutathione S-transfera 99.2 2.9E-10 9.9E-15 148.5 20.8 128 221-365 645-790 (2695)
159 2bjv_A PSP operon transcriptio 99.2 1.2E-10 4E-15 121.1 14.0 149 185-361 4-183 (265)
160 1w5s_A Origin recognition comp 99.2 4.8E-10 1.6E-14 124.1 19.4 205 460-683 22-275 (412)
161 3co5_A Putative two-component 99.1 7.8E-12 2.7E-16 117.2 2.3 111 462-609 6-116 (143)
162 1sxj_C Activator 1 40 kDa subu 99.1 1.6E-09 5.3E-14 117.0 20.5 174 179-388 17-203 (340)
163 3n70_A Transport activator; si 99.1 1.6E-10 5.5E-15 108.4 8.6 112 188-333 2-116 (145)
164 3co5_A Putative two-component 99.1 1.1E-10 3.8E-15 109.3 7.2 112 188-333 5-116 (143)
165 2gno_A DNA polymerase III, gam 99.1 4.1E-10 1.4E-14 119.0 12.3 125 494-644 18-152 (305)
166 1ojl_A Transcriptional regulat 99.1 5.5E-10 1.9E-14 118.4 12.6 145 188-360 3-178 (304)
167 3vkg_A Dynein heavy chain, cyt 99.0 6.6E-09 2.3E-13 136.5 20.2 323 220-563 1303-1714(3245)
168 1a5t_A Delta prime, HOLB; zinc 99.0 2.7E-08 9.3E-13 106.9 20.5 148 221-391 24-199 (334)
169 3ec2_A DNA replication protein 98.9 3.8E-09 1.3E-13 102.8 9.8 100 181-292 4-112 (180)
170 2gno_A DNA polymerase III, gam 98.9 2E-08 6.8E-13 106.1 15.5 142 191-368 1-152 (305)
171 3f9v_A Minichromosome maintena 98.9 9.2E-10 3.1E-14 127.1 4.9 163 187-369 295-491 (595)
172 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.8E-09 6E-14 112.9 5.5 122 490-616 119-242 (331)
173 1w5s_A Origin recognition comp 98.8 7.4E-08 2.5E-12 106.4 19.0 204 187-405 22-273 (412)
174 2kjq_A DNAA-related protein; s 98.8 5.8E-09 2E-13 98.1 6.1 101 494-625 36-142 (149)
175 3vkg_A Dynein heavy chain, cyt 98.7 1.5E-07 5.2E-12 123.9 19.9 128 221-365 604-750 (3245)
176 2kjq_A DNAA-related protein; s 98.7 1.8E-08 6.2E-13 94.7 8.0 101 220-348 35-141 (149)
177 2krk_A 26S protease regulatory 98.7 1.1E-08 3.7E-13 86.1 5.4 76 352-444 8-83 (86)
178 3k1j_A LON protease, ATP-depen 98.7 7E-08 2.4E-12 112.1 14.2 53 180-247 34-86 (604)
179 1svm_A Large T antigen; AAA+ f 98.7 3.2E-09 1.1E-13 115.0 2.6 119 490-630 165-284 (377)
180 3ec2_A DNA replication protein 98.7 9.3E-09 3.2E-13 100.0 5.2 105 490-609 34-143 (180)
181 3kw6_A 26S protease regulatory 98.6 3E-08 1E-12 82.0 6.1 73 353-442 1-73 (78)
182 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.9E-08 6.5E-13 105.1 5.2 120 217-340 119-242 (331)
183 1tf7_A KAIC; homohexamer, hexa 98.6 1E-06 3.6E-11 100.4 19.4 76 490-565 277-383 (525)
184 3vlf_B 26S protease regulatory 98.6 6.5E-08 2.2E-12 81.8 5.9 74 356-446 2-75 (88)
185 3f8t_A Predicted ATPase involv 98.5 2.2E-07 7.5E-12 101.4 11.0 208 462-726 215-483 (506)
186 2fna_A Conserved hypothetical 98.5 3.1E-06 1.1E-10 91.1 18.4 165 495-676 31-252 (357)
187 3ozx_A RNAse L inhibitor; ATP 98.5 1.3E-07 4.4E-12 107.5 7.7 27 219-245 23-49 (538)
188 2w58_A DNAI, primosome compone 98.5 1.4E-07 4.9E-12 93.3 6.9 69 495-565 55-127 (202)
189 1ny5_A Transcriptional regulat 98.5 1.9E-07 6.5E-12 102.2 8.3 166 495-681 161-370 (387)
190 3aji_B S6C, proteasome (prosom 98.4 1.3E-07 4.5E-12 79.1 4.6 74 356-446 2-75 (83)
191 2qen_A Walker-type ATPase; unk 98.4 1E-05 3.4E-10 86.8 20.6 181 187-391 12-240 (350)
192 2r2a_A Uncharacterized protein 98.4 1.8E-07 6.3E-12 92.1 5.9 126 496-633 7-155 (199)
193 3j16_B RLI1P; ribosome recycli 98.4 5.6E-07 1.9E-11 103.5 9.3 28 218-245 100-127 (608)
194 2w58_A DNAI, primosome compone 98.4 5.1E-07 1.7E-11 89.3 7.5 71 221-293 54-128 (202)
195 2fna_A Conserved hypothetical 98.4 9.9E-06 3.4E-10 87.1 18.3 178 186-391 12-244 (357)
196 2qen_A Walker-type ATPase; unk 98.3 8.4E-06 2.9E-10 87.4 16.8 166 495-675 32-247 (350)
197 2qgz_A Helicase loader, putati 98.3 2.4E-07 8E-12 98.2 4.2 70 494-565 152-226 (308)
198 3dzd_A Transcriptional regulat 98.3 1.9E-06 6.5E-11 93.5 11.0 166 495-680 153-360 (368)
199 1cr5_A SEC18P (residues 22 - 2 98.3 1.8E-05 6.1E-10 76.7 15.5 150 8-168 7-186 (189)
200 1qcs_A N-ethylmaleimide sensit 98.2 1.5E-05 5E-10 78.8 14.9 154 9-169 10-191 (211)
201 2r2a_A Uncharacterized protein 98.2 1.2E-06 4E-11 86.3 6.9 125 222-356 6-154 (199)
202 1yqt_A RNAse L inhibitor; ATP- 98.2 1.7E-06 5.7E-11 98.7 8.5 28 218-245 44-71 (538)
203 1svm_A Large T antigen; AAA+ f 98.2 2.2E-07 7.4E-12 100.6 0.9 120 215-354 163-284 (377)
204 2iw3_A Elongation factor 3A; a 98.2 4.8E-07 1.7E-11 108.2 3.5 42 485-526 688-733 (986)
205 3bk7_A ABC transporter ATP-bin 98.2 1.8E-06 6.3E-11 99.4 8.2 28 218-245 114-141 (607)
206 2jv2_A Putative uncharacterize 98.2 8.2E-06 2.8E-10 67.1 9.4 71 93-169 11-81 (83)
207 1ye8_A Protein THEP1, hypothet 98.1 1.8E-05 6.2E-10 76.4 12.9 26 223-248 2-27 (178)
208 2dzn_B 26S protease regulatory 98.1 9.5E-07 3.2E-11 73.6 2.7 69 358-443 1-69 (82)
209 2qgz_A Helicase loader, putati 98.1 7.4E-06 2.5E-10 86.6 10.3 70 221-292 152-226 (308)
210 1tue_A Replication protein E1; 98.1 1.9E-06 6.6E-11 83.9 4.9 33 490-522 54-86 (212)
211 1tue_A Replication protein E1; 98.0 4.4E-06 1.5E-10 81.3 6.2 32 218-249 55-86 (212)
212 3ux8_A Excinuclease ABC, A sub 98.0 1.1E-05 3.8E-10 94.8 10.1 30 486-515 338-369 (670)
213 1ny5_A Transcriptional regulat 98.0 2.7E-05 9.2E-10 85.1 12.5 122 187-333 137-282 (387)
214 1ye8_A Protein THEP1, hypothet 98.0 2.2E-05 7.7E-10 75.8 10.1 25 497-521 3-27 (178)
215 4g1u_C Hemin import ATP-bindin 98.0 5E-06 1.7E-10 85.8 5.1 31 216-246 32-62 (266)
216 1n0w_A DNA repair protein RAD5 98.0 1.5E-05 5.2E-10 80.8 8.6 79 217-295 20-134 (243)
217 3rlf_A Maltose/maltodextrin im 97.9 1.4E-05 4.8E-10 86.1 7.9 31 216-246 24-54 (381)
218 3gfo_A Cobalt import ATP-bindi 97.9 5.4E-06 1.9E-10 85.8 4.4 32 216-247 29-60 (275)
219 1zc1_A Ubiquitin fusion degrad 97.9 0.00021 7.2E-09 68.9 14.8 141 20-167 46-196 (208)
220 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.6E-05 1.2E-09 77.3 10.1 37 217-253 19-58 (235)
221 3dzd_A Transcriptional regulat 97.9 4.5E-05 1.5E-09 82.7 11.2 121 188-333 130-273 (368)
222 4a74_A DNA repair and recombin 97.9 1.8E-05 6.1E-10 79.5 7.3 29 217-245 21-49 (231)
223 3fvq_A Fe(3+) IONS import ATP- 97.9 2.4E-05 8.2E-10 83.7 8.5 31 216-246 25-55 (359)
224 2yuj_A Ubiquitin fusion degrad 97.9 0.00026 9E-09 67.3 14.6 141 18-163 39-184 (190)
225 3tif_A Uncharacterized ABC tra 97.8 1.6E-05 5.4E-10 80.5 6.2 32 216-247 26-57 (235)
226 3tui_C Methionine import ATP-b 97.8 2.6E-05 9E-10 83.5 8.2 32 216-247 49-80 (366)
227 4gp7_A Metallophosphoesterase; 97.8 1.3E-05 4.3E-10 77.0 4.7 25 216-240 4-28 (171)
228 3hr8_A Protein RECA; alpha and 97.8 8.1E-05 2.8E-09 79.7 11.4 113 217-329 57-194 (356)
229 3hr8_A Protein RECA; alpha and 97.8 6.9E-05 2.4E-09 80.2 10.8 116 490-606 57-195 (356)
230 2yyz_A Sugar ABC transporter, 97.8 3.2E-05 1.1E-09 83.0 8.1 31 216-246 24-54 (359)
231 1z47_A CYSA, putative ABC-tran 97.8 2.8E-05 9.7E-10 83.2 7.5 31 216-246 36-66 (355)
232 2cvh_A DNA repair and recombin 97.8 4.8E-05 1.7E-09 75.7 8.6 39 217-255 16-54 (220)
233 2it1_A 362AA long hypothetical 97.8 3.4E-05 1.2E-09 82.9 7.7 31 216-246 24-54 (362)
234 2ehv_A Hypothetical protein PH 97.7 0.00011 3.7E-09 74.7 10.7 38 217-254 26-67 (251)
235 2cvh_A DNA repair and recombin 97.7 6.7E-05 2.3E-09 74.6 8.8 40 490-529 16-55 (220)
236 2pcj_A ABC transporter, lipopr 97.7 3.1E-05 1E-09 77.8 6.0 31 216-246 25-55 (224)
237 1v43_A Sugar-binding transport 97.7 3.4E-05 1.2E-09 83.2 6.4 31 216-246 32-62 (372)
238 3d31_A Sulfate/molybdate ABC t 97.7 4.7E-05 1.6E-09 81.4 7.2 31 216-246 21-51 (348)
239 2olj_A Amino acid ABC transpor 97.7 3.9E-05 1.3E-09 78.9 6.3 32 216-247 45-76 (263)
240 1vpl_A ABC transporter, ATP-bi 97.7 0.0001 3.5E-09 75.4 9.4 31 216-246 36-66 (256)
241 2ehv_A Hypothetical protein PH 97.7 0.00013 4.5E-09 74.1 10.0 114 490-612 26-185 (251)
242 1pzn_A RAD51, DNA repair and r 97.7 6.6E-05 2.3E-09 80.7 7.9 40 216-255 126-174 (349)
243 2zr9_A Protein RECA, recombina 97.7 4.7E-05 1.6E-09 81.7 6.7 78 490-567 57-153 (349)
244 3lda_A DNA repair protein RAD5 97.6 8.4E-05 2.9E-09 81.0 8.6 116 217-332 174-327 (400)
245 2zr9_A Protein RECA, recombina 97.6 6.6E-05 2.3E-09 80.6 7.7 78 217-294 57-153 (349)
246 1u0j_A DNA replication protein 97.6 5.1E-05 1.7E-09 77.4 6.2 29 492-520 102-130 (267)
247 1n0w_A DNA repair protein RAD5 97.6 6.6E-05 2.3E-09 76.0 7.1 78 490-567 20-133 (243)
248 1xp8_A RECA protein, recombina 97.6 0.00014 4.8E-09 78.3 9.8 118 490-607 70-209 (366)
249 1jr3_D DNA polymerase III, del 97.6 0.00032 1.1E-08 75.2 12.7 158 493-678 17-189 (343)
250 2w0m_A SSO2452; RECA, SSPF, un 97.6 7.7E-05 2.6E-09 74.8 7.3 38 490-527 19-59 (235)
251 1v5w_A DMC1, meiotic recombina 97.6 0.00011 3.8E-09 78.7 9.0 115 217-331 118-272 (343)
252 2eyu_A Twitching motility prot 97.6 3E-05 1E-09 79.7 4.3 79 212-290 16-108 (261)
253 2ixe_A Antigen peptide transpo 97.6 7.7E-05 2.6E-09 77.1 7.4 31 216-246 40-70 (271)
254 1xp8_A RECA protein, recombina 97.6 0.00021 7.2E-09 77.0 10.9 113 217-329 70-207 (366)
255 3nh6_A ATP-binding cassette SU 97.6 3.5E-05 1.2E-09 80.9 4.7 32 216-247 75-106 (306)
256 2yz2_A Putative ABC transporte 97.6 0.00013 4.5E-09 75.2 9.0 31 216-246 28-58 (266)
257 1g6h_A High-affinity branched- 97.6 0.0001 3.5E-09 75.6 7.9 30 217-246 29-58 (257)
258 2z43_A DNA repair and recombin 97.6 8.3E-05 2.9E-09 79.1 7.0 78 217-294 103-217 (324)
259 1g29_1 MALK, maltose transport 97.6 0.0001 3.6E-09 79.5 7.7 31 216-246 24-54 (372)
260 2qi9_C Vitamin B12 import ATP- 97.5 5.8E-05 2E-09 76.9 5.3 32 216-247 21-52 (249)
261 2onk_A Molybdate/tungstate ABC 97.5 6.4E-05 2.2E-09 76.2 5.5 30 216-246 20-49 (240)
262 2ff7_A Alpha-hemolysin translo 97.5 0.0001 3.6E-09 75.0 7.1 31 216-246 30-60 (247)
263 1qhx_A CPT, protein (chloramph 97.5 0.00025 8.6E-09 68.0 9.2 36 221-256 3-38 (178)
264 1u94_A RECA protein, recombina 97.5 0.00019 6.5E-09 77.1 8.5 78 217-294 59-155 (356)
265 1oxx_K GLCV, glucose, ABC tran 97.5 7.4E-05 2.5E-09 80.1 5.2 31 216-246 26-56 (353)
266 2nq2_C Hypothetical ABC transp 97.5 0.00024 8.3E-09 72.5 8.7 31 216-246 26-56 (253)
267 3gd7_A Fusion complex of cysti 97.5 0.00021 7.1E-09 77.5 8.6 30 216-245 42-71 (390)
268 4a74_A DNA repair and recombin 97.5 0.00011 3.9E-09 73.6 5.9 40 490-529 21-69 (231)
269 1u94_A RECA protein, recombina 97.4 0.00016 5.4E-09 77.7 7.2 118 490-607 59-198 (356)
270 3io5_A Recombination and repai 97.4 0.00027 9.3E-09 73.5 8.7 78 217-295 25-126 (333)
271 1sgw_A Putative ABC transporte 97.4 6.2E-05 2.1E-09 74.8 3.8 31 216-246 30-60 (214)
272 2cbz_A Multidrug resistance-as 97.4 0.00025 8.6E-09 71.7 8.1 30 216-245 26-55 (237)
273 2ghi_A Transport protein; mult 97.4 0.00011 3.6E-09 75.6 5.4 31 216-246 41-71 (260)
274 1ji0_A ABC transporter; ATP bi 97.4 0.0001 3.5E-09 74.8 5.2 31 216-246 27-57 (240)
275 3jvv_A Twitching mobility prot 97.4 9.5E-05 3.2E-09 79.4 5.0 72 219-290 121-206 (356)
276 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4E-09 72.0 5.1 36 217-252 21-56 (199)
277 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00024 8.2E-09 72.5 7.5 29 216-244 24-52 (250)
278 1zp6_A Hypothetical protein AT 97.4 0.0001 3.4E-09 71.7 4.4 41 217-257 5-45 (191)
279 2ihy_A ABC transporter, ATP-bi 97.4 5E-05 1.7E-09 78.8 1.9 30 217-246 43-72 (279)
280 3f8t_A Predicted ATPase involv 97.3 0.00029 9.9E-09 77.1 7.6 118 223-359 241-385 (506)
281 1pzn_A RAD51, DNA repair and r 97.3 0.00037 1.3E-08 74.8 8.0 40 490-529 127-175 (349)
282 4g1u_C Hemin import ATP-bindin 97.3 0.0002 6.9E-09 73.7 5.7 43 485-527 26-72 (266)
283 2pjz_A Hypothetical protein ST 97.3 0.00041 1.4E-08 71.2 7.9 29 216-245 26-54 (263)
284 1v5w_A DMC1, meiotic recombina 97.3 0.00086 3E-08 71.8 10.7 116 490-608 118-273 (343)
285 2pze_A Cystic fibrosis transme 97.3 0.00062 2.1E-08 68.4 9.0 31 216-246 29-59 (229)
286 1nlf_A Regulatory protein REPA 97.3 0.00046 1.6E-08 71.6 8.1 29 217-245 26-54 (279)
287 2z43_A DNA repair and recombin 97.3 0.00032 1.1E-08 74.5 6.9 115 490-607 103-256 (324)
288 2eyu_A Twitching motility prot 97.2 0.00037 1.3E-08 71.6 6.8 79 485-563 16-108 (261)
289 3gfo_A Cobalt import ATP-bindi 97.2 0.00021 7E-09 73.9 4.9 44 485-528 23-70 (275)
290 3jvv_A Twitching mobility prot 97.2 0.0011 3.7E-08 71.2 10.6 97 495-612 124-234 (356)
291 3rlf_A Maltose/maltodextrin im 97.2 0.00022 7.7E-09 76.8 5.2 44 485-528 18-65 (381)
292 3io5_A Recombination and repai 97.2 0.00046 1.6E-08 71.8 7.3 115 490-605 25-168 (333)
293 2dr3_A UPF0273 protein PH0284; 97.2 0.0016 5.5E-08 65.7 11.1 38 217-254 19-59 (247)
294 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00035 1.2E-08 74.7 6.2 44 485-528 19-66 (359)
295 2ewv_A Twitching motility prot 97.2 0.00023 8E-09 77.0 4.8 80 211-290 126-219 (372)
296 3qf4_A ABC transporter, ATP-bi 97.2 0.0004 1.4E-08 80.0 6.9 32 216-247 364-395 (587)
297 2p5t_B PEZT; postsegregational 97.2 0.00072 2.5E-08 69.0 8.1 40 218-257 29-68 (253)
298 1qhx_A CPT, protein (chloramph 97.1 0.00074 2.5E-08 64.6 7.5 35 495-529 4-38 (178)
299 3trf_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 67.8 4.7 32 221-252 5-36 (185)
300 1kag_A SKI, shikimate kinase I 97.1 0.00031 1E-08 67.0 4.4 35 221-257 4-38 (173)
301 2rhm_A Putative kinase; P-loop 97.1 0.00039 1.3E-08 67.5 5.2 34 218-251 2-35 (193)
302 1z6t_A APAF-1, apoptotic prote 97.1 0.0058 2E-07 70.4 16.0 47 186-243 123-169 (591)
303 3qf4_B Uncharacterized ABC tra 97.1 0.00048 1.7E-08 79.6 6.8 33 215-247 375-407 (598)
304 3lda_A DNA repair protein RAD5 97.1 0.00044 1.5E-08 75.3 6.1 116 490-608 174-327 (400)
305 2i1q_A DNA repair and recombin 97.1 0.00055 1.9E-08 72.6 6.6 28 217-244 94-121 (322)
306 3tui_C Methionine import ATP-b 97.0 0.00053 1.8E-08 73.3 5.8 45 485-529 43-91 (366)
307 3uie_A Adenylyl-sulfate kinase 97.0 0.00052 1.8E-08 67.3 5.4 39 219-257 23-64 (200)
308 1y63_A LMAJ004144AAA protein; 97.0 0.00032 1.1E-08 67.8 3.8 32 219-250 8-40 (184)
309 1nlf_A Regulatory protein REPA 97.0 0.0012 4.1E-08 68.4 8.4 29 490-518 26-54 (279)
310 4a82_A Cystic fibrosis transme 97.0 0.0004 1.4E-08 79.9 4.9 33 215-247 361-393 (578)
311 1z47_A CYSA, putative ABC-tran 97.0 0.00055 1.9E-08 73.2 5.6 43 485-527 30-76 (355)
312 2yyz_A Sugar ABC transporter, 97.0 0.00059 2E-08 73.1 5.7 43 485-527 18-64 (359)
313 3ozx_A RNAse L inhibitor; ATP 97.0 0.00072 2.5E-08 76.7 6.5 29 217-245 290-318 (538)
314 3vaa_A Shikimate kinase, SK; s 97.0 0.00053 1.8E-08 67.2 4.8 33 493-525 24-56 (199)
315 2b8t_A Thymidine kinase; deoxy 97.0 0.0012 4.1E-08 65.8 7.3 73 220-293 11-102 (223)
316 1htw_A HI0065; nucleotide-bind 97.0 0.00052 1.8E-08 64.6 4.5 31 215-245 27-57 (158)
317 1gvn_B Zeta; postsegregational 97.0 0.0013 4.5E-08 68.5 8.0 39 219-257 31-69 (287)
318 1zp6_A Hypothetical protein AT 97.0 0.00036 1.2E-08 67.7 3.4 38 493-530 8-45 (191)
319 2r6a_A DNAB helicase, replicat 97.0 0.0023 7.9E-08 71.2 10.5 38 217-254 199-240 (454)
320 4eun_A Thermoresistant glucoki 97.0 0.0006 2.1E-08 66.9 5.1 37 219-257 27-63 (200)
321 3b5x_A Lipid A export ATP-bind 97.0 0.00095 3.2E-08 76.9 7.5 32 215-246 363-394 (582)
322 2ius_A DNA translocase FTSK; n 97.0 0.0054 1.8E-07 68.6 13.3 76 280-365 296-374 (512)
323 3b60_A Lipid A export ATP-bind 97.0 0.00051 1.7E-08 79.2 5.1 33 215-247 363-395 (582)
324 2orw_A Thymidine kinase; TMTK, 96.9 0.00066 2.3E-08 65.7 5.1 24 221-244 3-26 (184)
325 3iij_A Coilin-interacting nucl 96.9 0.00066 2.3E-08 65.2 5.1 32 220-251 10-41 (180)
326 2orw_A Thymidine kinase; TMTK, 96.9 0.0011 3.6E-08 64.2 6.5 29 497-525 6-37 (184)
327 1knq_A Gluconate kinase; ALFA/ 96.9 0.00062 2.1E-08 65.1 4.8 36 220-257 7-42 (175)
328 3kb2_A SPBC2 prophage-derived 96.9 0.00056 1.9E-08 64.9 4.5 31 223-253 3-33 (173)
329 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0002 6.9E-09 76.2 1.2 73 218-290 168-250 (330)
330 3thx_B DNA mismatch repair pro 96.9 0.0015 5.1E-08 78.3 8.7 28 217-244 669-696 (918)
331 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0023 7.9E-08 65.5 9.1 38 221-258 4-44 (260)
332 1via_A Shikimate kinase; struc 96.9 0.00061 2.1E-08 65.2 4.3 29 223-251 6-34 (175)
333 2dr3_A UPF0273 protein PH0284; 96.9 0.0042 1.4E-07 62.6 10.7 39 490-528 19-60 (247)
334 1zuh_A Shikimate kinase; alpha 96.9 0.00073 2.5E-08 64.1 4.6 31 221-251 7-37 (168)
335 2pez_A Bifunctional 3'-phospho 96.8 0.001 3.5E-08 63.8 5.6 38 220-257 4-44 (179)
336 1z6t_A APAF-1, apoptotic prote 96.8 0.0077 2.6E-07 69.4 14.0 45 461-516 125-169 (591)
337 3trf_A Shikimate kinase, SK; a 96.8 0.00079 2.7E-08 64.9 4.8 32 494-525 5-36 (185)
338 3cm0_A Adenylate kinase; ATP-b 96.8 0.00069 2.4E-08 65.3 4.3 30 221-250 4-33 (186)
339 2it1_A 362AA long hypothetical 96.8 0.00097 3.3E-08 71.5 5.7 44 485-528 18-65 (362)
340 2iut_A DNA translocase FTSK; n 96.8 0.0048 1.6E-07 69.6 11.5 74 555-641 345-420 (574)
341 1u0j_A DNA replication protein 96.8 0.0007 2.4E-08 69.0 4.3 29 219-247 102-130 (267)
342 2ius_A DNA translocase FTSK; n 96.8 0.0043 1.5E-07 69.4 11.0 77 553-642 296-375 (512)
343 1vma_A Cell division protein F 96.8 0.0036 1.2E-07 65.5 9.7 37 218-254 101-140 (306)
344 2iyv_A Shikimate kinase, SK; t 96.8 0.00083 2.8E-08 64.7 4.5 30 222-251 3-32 (184)
345 2ewv_A Twitching motility prot 96.8 0.0011 3.8E-08 71.7 5.8 79 485-563 127-219 (372)
346 3sfz_A APAF-1, apoptotic pepti 96.8 0.014 4.6E-07 73.5 16.5 168 186-390 123-321 (1249)
347 4gp7_A Metallophosphoesterase; 96.8 0.0007 2.4E-08 64.7 3.6 19 495-513 10-28 (171)
348 3nwj_A ATSK2; P loop, shikimat 96.8 0.00066 2.3E-08 69.0 3.6 31 221-251 48-78 (250)
349 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4E-08 64.8 5.1 32 220-251 19-50 (201)
350 3tr0_A Guanylate kinase, GMP k 96.7 0.00086 3E-08 65.7 4.2 29 218-246 4-32 (205)
351 3t61_A Gluconokinase; PSI-biol 96.7 0.0011 3.7E-08 65.1 4.8 31 221-251 18-48 (202)
352 3upu_A ATP-dependent DNA helic 96.7 0.0039 1.3E-07 69.5 9.9 23 223-245 47-69 (459)
353 2ze6_A Isopentenyl transferase 96.7 0.00087 3E-08 68.4 4.2 32 223-254 3-34 (253)
354 2p5t_B PEZT; postsegregational 96.7 0.0023 7.8E-08 65.3 7.4 37 494-530 32-68 (253)
355 1tev_A UMP-CMP kinase; ploop, 96.7 0.0011 3.9E-08 64.1 4.9 30 221-250 3-32 (196)
356 1aky_A Adenylate kinase; ATP:A 96.7 0.0012 4E-08 65.8 5.1 32 220-251 3-34 (220)
357 2c95_A Adenylate kinase 1; tra 96.7 0.001 3.5E-08 64.6 4.6 32 220-251 8-39 (196)
358 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.9E-08 64.1 4.9 32 493-524 4-35 (193)
359 1v43_A Sugar-binding transport 96.7 0.00096 3.3E-08 71.8 4.6 43 485-527 26-72 (372)
360 3umf_A Adenylate kinase; rossm 96.7 0.0013 4.6E-08 65.2 5.2 40 218-259 26-65 (217)
361 1kag_A SKI, shikimate kinase I 96.7 0.0012 4.1E-08 62.8 4.7 29 495-523 5-33 (173)
362 1g5t_A COB(I)alamin adenosyltr 96.7 0.0085 2.9E-07 57.9 10.6 100 497-609 31-163 (196)
363 1cr0_A DNA primase/helicase; R 96.7 0.0014 4.8E-08 68.5 5.6 114 489-608 30-196 (296)
364 2i1q_A DNA repair and recombin 96.7 0.0015 5E-08 69.3 5.7 114 490-606 94-256 (322)
365 1ly1_A Polynucleotide kinase; 96.7 0.00095 3.2E-08 63.8 3.7 26 221-246 2-28 (181)
366 1z6g_A Guanylate kinase; struc 96.6 0.00091 3.1E-08 66.6 3.6 31 216-246 18-48 (218)
367 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.1E-08 62.8 4.3 30 222-251 3-32 (173)
368 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00081 2.8E-08 71.5 3.4 71 493-563 170-250 (330)
369 2vli_A Antibiotic resistance p 96.6 0.0009 3.1E-08 64.3 3.4 30 221-250 5-34 (183)
370 3lw7_A Adenylate kinase relate 96.6 0.0012 4.2E-08 62.5 4.4 28 223-251 3-30 (179)
371 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.3E-08 62.5 4.4 30 496-525 3-32 (173)
372 1kht_A Adenylate kinase; phosp 96.6 0.0012 4.1E-08 63.8 4.2 26 221-246 3-28 (192)
373 2zts_A Putative uncharacterize 96.6 0.0039 1.3E-07 63.0 8.2 37 217-253 26-66 (251)
374 1qf9_A UMP/CMP kinase, protein 96.6 0.0016 5.6E-08 62.9 5.1 30 221-250 6-35 (194)
375 2v9p_A Replication protein E1; 96.6 0.0012 4.2E-08 68.9 4.4 31 215-245 120-150 (305)
376 1zd8_A GTP:AMP phosphotransfer 96.6 0.0013 4.4E-08 65.9 4.4 32 220-251 6-37 (227)
377 3e1s_A Exodeoxyribonuclease V, 96.6 0.0025 8.5E-08 73.0 7.3 25 221-245 204-228 (574)
378 1via_A Shikimate kinase; struc 96.6 0.0013 4.5E-08 62.8 4.3 29 496-524 6-34 (175)
379 3d31_A Sulfate/molybdate ABC t 96.6 0.0013 4.5E-08 70.2 4.7 45 485-529 15-63 (348)
380 3crm_A TRNA delta(2)-isopenten 96.6 0.0039 1.3E-07 65.5 8.1 35 221-255 5-39 (323)
381 3tlx_A Adenylate kinase 2; str 96.6 0.0017 5.8E-08 65.8 5.2 32 220-251 28-59 (243)
382 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.7E-08 65.1 3.6 28 218-245 3-30 (207)
383 3j16_B RLI1P; ribosome recycli 96.6 0.003 1E-07 72.6 7.7 24 222-245 379-402 (608)
384 2b8t_A Thymidine kinase; deoxy 96.6 0.0024 8.1E-08 63.6 6.0 68 497-565 15-101 (223)
385 2iut_A DNA translocase FTSK; n 96.6 0.013 4.4E-07 66.0 12.7 73 282-364 345-419 (574)
386 3iij_A Coilin-interacting nucl 96.6 0.0014 4.8E-08 62.9 4.2 31 494-524 11-41 (180)
387 3dm5_A SRP54, signal recogniti 96.6 0.009 3.1E-07 65.5 11.0 71 220-290 99-192 (443)
388 2bwj_A Adenylate kinase 5; pho 96.6 0.0016 5.4E-08 63.4 4.6 30 221-250 12-41 (199)
389 1kgd_A CASK, peripheral plasma 96.5 0.0015 5.1E-08 62.9 4.2 27 220-246 4-30 (180)
390 3sfz_A APAF-1, apoptotic pepti 96.5 0.017 5.8E-07 72.6 15.1 166 461-666 125-321 (1249)
391 1cke_A CK, MSSA, protein (cyti 96.5 0.0017 6E-08 64.7 4.9 29 222-250 6-34 (227)
392 1y63_A LMAJ004144AAA protein; 96.5 0.0013 4.6E-08 63.4 3.9 30 495-524 11-41 (184)
393 3bk7_A ABC transporter ATP-bin 96.5 0.002 6.9E-08 74.1 5.9 28 218-245 379-406 (607)
394 1ak2_A Adenylate kinase isoenz 96.5 0.0019 6.7E-08 64.9 5.2 31 221-251 16-46 (233)
395 2pt5_A Shikimate kinase, SK; a 96.5 0.0019 6.5E-08 61.1 4.8 29 223-251 2-30 (168)
396 1znw_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 64.7 3.9 30 217-246 16-45 (207)
397 3dl0_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 64.4 4.6 30 223-252 2-31 (216)
398 3nh6_A ATP-binding cassette SU 96.5 0.0015 5.2E-08 68.4 4.4 44 485-528 69-116 (306)
399 3bh0_A DNAB-like replicative h 96.5 0.011 3.8E-07 62.2 11.2 38 217-254 64-104 (315)
400 3fb4_A Adenylate kinase; psych 96.5 0.0017 5.7E-08 64.3 4.5 30 223-252 2-31 (216)
401 2ze6_A Isopentenyl transferase 96.5 0.0016 5.4E-08 66.5 4.3 32 496-527 3-34 (253)
402 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0022 7.6E-08 72.8 5.9 29 218-246 309-337 (538)
403 1ukz_A Uridylate kinase; trans 96.5 0.002 7E-08 63.0 5.0 31 221-251 15-45 (203)
404 2a5y_B CED-4; apoptosis; HET: 96.5 0.029 9.8E-07 64.0 15.3 166 190-390 131-330 (549)
405 4f4c_A Multidrug resistance pr 96.5 0.0035 1.2E-07 79.0 8.2 46 485-530 1094-1143(1321)
406 2r8r_A Sensor protein; KDPD, P 96.5 0.028 9.6E-07 55.6 13.1 32 496-527 8-42 (228)
407 2yl4_A ATP-binding cassette SU 96.5 0.0015 5.2E-08 75.4 4.6 33 215-247 364-396 (595)
408 3thx_A DNA mismatch repair pro 96.5 0.0042 1.4E-07 74.6 8.5 26 218-243 659-684 (934)
409 3sr0_A Adenylate kinase; phosp 96.5 0.0018 6.3E-08 63.7 4.5 34 223-258 2-35 (206)
410 1g29_1 MALK, maltose transport 96.5 0.0018 6.3E-08 69.7 4.9 43 485-527 18-64 (372)
411 1jr3_D DNA polymerase III, del 96.5 0.053 1.8E-06 57.6 16.4 142 221-388 18-176 (343)
412 3gd7_A Fusion complex of cysti 96.5 0.0065 2.2E-07 65.8 9.1 34 485-518 36-71 (390)
413 3dm5_A SRP54, signal recogniti 96.5 0.01 3.5E-07 65.0 10.7 71 494-564 100-193 (443)
414 1zak_A Adenylate kinase; ATP:A 96.5 0.0014 4.9E-08 65.2 3.7 31 220-250 4-34 (222)
415 3kl4_A SRP54, signal recogniti 96.5 0.0062 2.1E-07 66.7 9.0 71 220-290 96-189 (433)
416 2q6t_A DNAB replication FORK h 96.5 0.009 3.1E-07 66.2 10.5 38 217-254 196-237 (444)
417 2jeo_A Uridine-cytidine kinase 96.5 0.0017 5.7E-08 65.9 4.2 31 217-247 21-51 (245)
418 3be4_A Adenylate kinase; malar 96.5 0.0018 6.2E-08 64.3 4.4 32 221-252 5-36 (217)
419 3uie_A Adenylyl-sulfate kinase 96.4 0.0017 5.8E-08 63.6 4.0 37 494-530 25-64 (200)
420 2iyv_A Shikimate kinase, SK; t 96.4 0.0021 7.1E-08 61.9 4.4 29 496-524 4-32 (184)
421 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.4E-08 65.1 4.7 30 221-250 27-56 (246)
422 2zts_A Putative uncharacterize 96.4 0.013 4.3E-07 59.1 10.4 38 490-527 26-67 (251)
423 3upu_A ATP-dependent DNA helic 96.4 0.0044 1.5E-07 69.1 7.6 96 496-608 47-166 (459)
424 4e22_A Cytidylate kinase; P-lo 96.4 0.0023 8E-08 65.2 4.9 31 220-250 26-56 (252)
425 2fz4_A DNA repair protein RAD2 96.4 0.011 3.7E-07 59.6 9.7 33 222-254 109-141 (237)
426 3c8u_A Fructokinase; YP_612366 96.4 0.0019 6.3E-08 63.8 3.9 28 219-246 20-47 (208)
427 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0053 1.8E-07 62.8 7.5 37 495-531 5-44 (260)
428 1zuh_A Shikimate kinase; alpha 96.4 0.0023 7.8E-08 60.6 4.4 30 496-525 9-38 (168)
429 2gxq_A Heat resistant RNA depe 96.4 0.011 3.6E-07 57.8 9.4 19 495-513 39-57 (207)
430 1nks_A Adenylate kinase; therm 96.4 0.0021 7.2E-08 62.1 4.2 24 223-246 3-26 (194)
431 2fz4_A DNA repair protein RAD2 96.4 0.0062 2.1E-07 61.4 7.7 33 496-528 110-142 (237)
432 4a82_A Cystic fibrosis transme 96.4 0.0037 1.3E-07 71.9 6.7 46 484-529 355-404 (578)
433 4eun_A Thermoresistant glucoki 96.3 0.0027 9.2E-08 62.1 4.8 34 495-530 30-63 (200)
434 1lvg_A Guanylate kinase, GMP k 96.3 0.0018 6E-08 63.4 3.5 27 220-246 3-29 (198)
435 3g5u_A MCG1178, multidrug resi 96.3 0.0026 8.9E-08 79.9 5.7 46 485-530 1048-1097(1284)
436 3umf_A Adenylate kinase; rossm 96.3 0.0025 8.6E-08 63.2 4.4 40 491-532 26-65 (217)
437 2jaq_A Deoxyguanosine kinase; 96.3 0.0026 8.9E-08 62.1 4.5 28 223-250 2-29 (205)
438 3r20_A Cytidylate kinase; stru 96.3 0.003 1E-07 63.3 4.9 30 221-250 9-38 (233)
439 3crm_A TRNA delta(2)-isopenten 96.3 0.003 1E-07 66.3 5.1 36 495-530 6-41 (323)
440 1b0u_A Histidine permease; ABC 96.3 0.0015 5.2E-08 66.9 2.8 32 216-247 27-58 (262)
441 3lw7_A Adenylate kinase relate 96.3 0.0025 8.7E-08 60.3 4.2 29 496-525 3-31 (179)
442 3cm0_A Adenylate kinase; ATP-b 96.3 0.0024 8.4E-08 61.4 4.1 28 496-523 6-33 (186)
443 2yvu_A Probable adenylyl-sulfa 96.3 0.0052 1.8E-07 59.2 6.4 38 219-256 11-51 (186)
444 2pbr_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 60.9 4.9 31 223-253 2-35 (195)
445 1e6c_A Shikimate kinase; phosp 96.3 0.0028 9.4E-08 60.2 4.4 29 496-524 4-32 (173)
446 3t61_A Gluconokinase; PSI-biol 96.3 0.0031 1.1E-07 61.7 4.9 30 495-524 19-48 (202)
447 2oap_1 GSPE-2, type II secreti 96.3 0.0017 5.8E-08 73.1 3.2 71 219-289 258-342 (511)
448 2v54_A DTMP kinase, thymidylat 96.3 0.0031 1E-07 61.7 4.8 34 220-253 3-37 (204)
449 1knq_A Gluconate kinase; ALFA/ 96.3 0.0032 1.1E-07 60.0 4.8 33 496-530 10-42 (175)
450 3tau_A Guanylate kinase, GMP k 96.3 0.0023 7.9E-08 63.1 3.8 28 220-247 7-34 (208)
451 2r6a_A DNAB helicase, replicat 96.3 0.0052 1.8E-07 68.4 7.2 38 490-527 199-240 (454)
452 1e4v_A Adenylate kinase; trans 96.3 0.0028 9.6E-08 62.7 4.5 29 223-251 2-30 (214)
453 2if2_A Dephospho-COA kinase; a 96.3 0.0025 8.7E-08 62.4 4.1 28 223-251 3-30 (204)
454 1p9r_A General secretion pathw 96.3 0.0037 1.3E-07 68.4 5.7 70 220-290 166-246 (418)
455 1m7g_A Adenylylsulfate kinase; 96.2 0.003 1E-07 62.4 4.5 40 218-257 22-65 (211)
456 3sr0_A Adenylate kinase; phosp 96.2 0.0029 1E-07 62.3 4.4 33 497-531 3-35 (206)
457 1mv5_A LMRA, multidrug resista 96.2 0.0013 4.3E-08 66.8 1.8 31 216-246 23-53 (243)
458 3nwj_A ATSK2; P loop, shikimat 96.2 0.002 6.9E-08 65.4 3.3 30 495-524 49-78 (250)
459 2plr_A DTMP kinase, probable t 96.2 0.0028 9.6E-08 62.3 4.3 28 221-248 4-31 (213)
460 2px0_A Flagellar biosynthesis 96.2 0.011 3.7E-07 61.7 9.0 35 220-254 104-142 (296)
461 1aky_A Adenylate kinase; ATP:A 96.2 0.0033 1.1E-07 62.4 4.8 31 495-525 5-35 (220)
462 2cdn_A Adenylate kinase; phosp 96.2 0.0035 1.2E-07 61.2 5.0 30 496-525 22-51 (201)
463 2c95_A Adenylate kinase 1; tra 96.2 0.0031 1.1E-07 61.2 4.5 32 494-525 9-40 (196)
464 1gvn_B Zeta; postsegregational 96.2 0.0027 9.3E-08 66.0 4.3 37 494-530 33-69 (287)
465 1qf9_A UMP/CMP kinase, protein 96.2 0.0036 1.2E-07 60.4 4.9 31 495-525 7-37 (194)
466 2qor_A Guanylate kinase; phosp 96.2 0.0028 9.4E-08 62.3 4.0 29 219-247 10-38 (204)
467 3asz_A Uridine kinase; cytidin 96.2 0.0023 7.9E-08 63.0 3.5 35 219-253 4-38 (211)
468 3e1s_A Exodeoxyribonuclease V, 96.2 0.0043 1.5E-07 71.0 6.2 97 495-608 205-317 (574)
469 1htw_A HI0065; nucleotide-bind 96.2 0.0025 8.6E-08 59.9 3.5 30 489-518 26-57 (158)
470 4f4c_A Multidrug resistance pr 96.2 0.0096 3.3E-07 74.9 9.9 46 483-528 431-480 (1321)
471 1jjv_A Dephospho-COA kinase; P 96.2 0.0024 8.3E-08 62.7 3.6 32 223-257 4-35 (206)
472 2xb4_A Adenylate kinase; ATP-b 96.2 0.0033 1.1E-07 62.7 4.5 28 223-250 2-29 (223)
473 1tev_A UMP-CMP kinase; ploop, 96.2 0.0034 1.2E-07 60.7 4.6 30 495-524 4-33 (196)
474 1w4r_A Thymidine kinase; type 96.2 0.021 7.1E-07 55.2 9.9 66 497-565 23-103 (195)
475 4a1f_A DNAB helicase, replicat 96.2 0.0056 1.9E-07 64.9 6.5 38 217-254 42-82 (338)
476 2bdt_A BH3686; alpha-beta prot 96.2 0.0031 1.1E-07 61.0 4.2 35 222-257 3-37 (189)
477 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0034 1.2E-07 66.6 4.7 29 222-250 25-53 (359)
478 1s96_A Guanylate kinase, GMP k 96.2 0.003 1E-07 62.8 4.1 29 218-246 13-41 (219)
479 3lnc_A Guanylate kinase, GMP k 96.2 0.0015 5.1E-08 65.6 1.9 31 216-246 22-53 (231)
480 2z0h_A DTMP kinase, thymidylat 96.2 0.004 1.4E-07 60.4 4.9 31 223-253 2-35 (197)
481 3kl4_A SRP54, signal recogniti 96.2 0.012 4.2E-07 64.4 9.2 71 494-564 97-190 (433)
482 3a00_A Guanylate kinase, GMP k 96.2 0.0025 8.7E-08 61.5 3.4 25 222-246 2-26 (186)
483 1zd8_A GTP:AMP phosphotransfer 96.1 0.0034 1.2E-07 62.7 4.4 31 494-524 7-37 (227)
484 3qf4_A ABC transporter, ATP-bi 96.1 0.0067 2.3E-07 69.8 7.3 48 483-530 356-407 (587)
485 2oap_1 GSPE-2, type II secreti 96.1 0.0024 8.2E-08 71.9 3.5 71 492-562 258-342 (511)
486 2zu0_C Probable ATP-dependent 96.1 0.0019 6.3E-08 66.5 2.4 30 216-245 41-70 (267)
487 3dl0_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 62.0 4.3 29 497-525 3-31 (216)
488 3fb4_A Adenylate kinase; psych 96.1 0.0036 1.2E-07 61.8 4.4 29 497-525 3-31 (216)
489 2pt5_A Shikimate kinase, SK; a 96.1 0.0038 1.3E-07 58.9 4.4 28 497-524 3-30 (168)
490 3ney_A 55 kDa erythrocyte memb 96.1 0.0037 1.3E-07 60.8 4.3 31 216-246 14-44 (197)
491 2pez_A Bifunctional 3'-phospho 96.1 0.004 1.4E-07 59.6 4.5 35 496-530 7-44 (179)
492 1tf7_A KAIC; homohexamer, hexa 96.1 0.02 6.7E-07 64.9 11.0 77 217-293 277-384 (525)
493 3be4_A Adenylate kinase; malar 96.1 0.004 1.4E-07 61.7 4.6 30 496-525 7-36 (217)
494 2vli_A Antibiotic resistance p 96.1 0.0031 1.1E-07 60.4 3.6 28 496-523 7-34 (183)
495 1kht_A Adenylate kinase; phosp 96.1 0.0031 1.1E-07 60.8 3.6 24 496-519 5-28 (192)
496 2gza_A Type IV secretion syste 96.1 0.0023 8E-08 68.9 2.9 75 216-290 170-262 (361)
497 1z6g_A Guanylate kinase; struc 96.1 0.0029 1E-07 62.9 3.4 34 485-518 12-47 (218)
498 1wb9_A DNA mismatch repair pro 96.1 0.015 5.1E-07 68.9 10.0 26 219-244 605-630 (800)
499 2qt1_A Nicotinamide riboside k 96.0 0.0032 1.1E-07 61.8 3.6 28 218-245 18-45 (207)
500 1cke_A CK, MSSA, protein (cyti 96.0 0.004 1.4E-07 62.0 4.3 29 496-524 7-35 (227)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-131 Score=1159.60 Aligned_cols=783 Identities=77% Similarity=1.234 Sum_probs=627.6
Q ss_pred CCCCCCceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCC
Q 042193 1 SKKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLG 80 (784)
Q Consensus 1 ~~~~~~~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g 80 (784)
+++|.|++|+|++|.++++++|||+|++|++|||.+||+|+|+|+++..+++|++++++++++.|+||+.+|+|+|+++|
T Consensus 18 ~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~g 97 (806)
T 3cf2_A 18 KQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (806)
T ss_dssp ---CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTT
T ss_pred hccCCCceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCC
Confidence 46889999999999998999999999999999999999999999988888999999899999999999999999999999
Q ss_pred CeeeEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeC
Q 042193 81 DLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVA 160 (784)
Q Consensus 81 ~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~ 160 (784)
|.|+|+++++++.+++|++.|+..+.....+..+..+++.||....+||.+||+|.+.+++..+.|+|++++|.++++++
T Consensus 98 d~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~v~ 177 (806)
T 3cf2_A 98 DVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177 (806)
T ss_dssp CEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEECC
T ss_pred CEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeEEC
Confidence 99999998788999999999998877767777888899999988889999999999998888899999999999999999
Q ss_pred CCceEEEcCCCCccchhhhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHH
Q 042193 161 PDTEIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARA 240 (784)
Q Consensus 161 ~~t~i~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~ 240 (784)
++|.|.+.+.+..........+.++|+||||+++++++|++++.+|+.||++|..+|+.+++|||||||||||||+||++
T Consensus 178 ~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 178 PDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp TTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 99999888777655444356788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 042193 241 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320 (784)
Q Consensus 241 la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 320 (784)
+|++++.+++.++++++.+++.|+++..++.+|+.|..+.||||||||+|.++++++...++.+++++++|+.+|+++..
T Consensus 258 iA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred HHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999888788889999999999999999
Q ss_pred CCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 321 RAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 321 ~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
+.+|+||++||+++.+|++++|+|||+++|+++.|+..+|.+||+.+++++.+..++++..+|..|+||+++|+..+|++
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhhhhhhcccccccc
Q 042193 401 AALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480 (784)
Q Consensus 401 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~ 480 (784)
|++.++++....+.........+......++.+||..|+..+.|+.+++...+.|+++|++++|++++|+.|.+.+.||+
T Consensus 418 A~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~ 497 (806)
T 3cf2_A 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPV 497 (806)
T ss_dssp HHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTT
T ss_pred HHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhh
Confidence 99999988777666655555566667788999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEe
Q 042193 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 560 (784)
Q Consensus 481 ~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iD 560 (784)
.+++.|.++|+++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|+.|+...|||||||
T Consensus 498 ~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiD 577 (806)
T 3cf2_A 498 EHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp TCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECS
T ss_pred hCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHH
Q 042193 561 ELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIF 640 (784)
Q Consensus 561 Eid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il 640 (784)
|||++++.|+...++.++..++++++||++|||+....+|+||||||+|+.||||++||||||++|+||+|+.++|.+||
T Consensus 578 EiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il 657 (806)
T 3cf2_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 657 (806)
T ss_dssp CGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTT
T ss_pred hhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHH
Confidence 99999999976555556778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHH
Q 042193 641 KACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFE 720 (784)
Q Consensus 641 ~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 720 (784)
+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.++.....................+..+.|+++||+
T Consensus 658 ~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~ 737 (806)
T 3cf2_A 658 KANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 737 (806)
T ss_dssp TTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCT
T ss_pred HHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHH
Confidence 99999999999999999999999999999999999999999999876643322211110001111112234579999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccC------CCCCCCCCCCCCCCCCCC
Q 042193 721 ESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSDFRFPDRTESATA------GAADFFSSAIADDDDLYN 784 (784)
Q Consensus 721 ~al~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 784 (784)
+|++.++||+|++++++|++|.++|++++||++ |.+|..+....+ |.+.--...-.+|||||.
T Consensus 738 ~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (806)
T 3cf2_A 738 EAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 806 (806)
T ss_dssp TTC---------------CCCC------------------------------------------------
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHhcccCccc-cccCCCCcCCCCCCCCCCCcccccccCCCCcccccC
Confidence 999999999999999999999999999999998 999986653321 111111112257899993
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.5e-105 Score=957.07 Aligned_cols=780 Identities=77% Similarity=1.241 Sum_probs=638.2
Q ss_pred CCCCCCceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCC
Q 042193 1 SKKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLG 80 (784)
Q Consensus 1 ~~~~~~~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g 80 (784)
+++|+|++|+|++|.+++.|+|||+|++|++|||.+||+|.|+|++++.++|.+|+++.++.+.|+|++.+|.|+|+++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (806)
T 1ypw_A 18 KQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (806)
T ss_dssp CCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTT
T ss_pred hccCCCceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCC
Confidence 57899999999999998889999999999999999999999999987778899999888999999999999999999999
Q ss_pred CeeeEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeC
Q 042193 81 DLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVA 160 (784)
Q Consensus 81 ~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~ 160 (784)
|.|+|+++.+++.+++|+++|...++..+.+.++..+++++|....+||.+|+++.+..++..+.|+|++++|..+++++
T Consensus 98 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~ 177 (806)
T 1ypw_A 98 DVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177 (806)
T ss_dssp CEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCC
T ss_pred CEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceec
Confidence 99999998678899999999987776656666677799999987789999999999988888899999999999999999
Q ss_pred CCceEEEcCCCCccchhhhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHH
Q 042193 161 PDTEIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARA 240 (784)
Q Consensus 161 ~~t~i~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~ 240 (784)
++|.+.+.+.+.......+..+.++|++|+|+++++++|++++.+|+.+|++++++++.++.+|||+|||||||||||++
T Consensus 178 ~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 178 PDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp SSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHH
T ss_pred CCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 99999888777655433345678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 042193 241 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320 (784)
Q Consensus 241 la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 320 (784)
|+++++.+++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||+|.++++++...++...++..+|+.++++...
T Consensus 258 la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998877788889999999999999998
Q ss_pred CCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 321 RAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 321 ~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
+..+++|++||+++.+++++++++||+..+.++.|+.++|.+|++.+++++.+..+.++..++..++||+++++..++.+
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~e 417 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHH
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhhhhhhcccccccc
Q 042193 401 AALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPV 480 (784)
Q Consensus 401 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~ 480 (784)
+++.++++....+......+.........++..++..++....|+..++.....+.+.|++++|++.+++.|.+.+.+|.
T Consensus 418 a~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~ 497 (806)
T 1ypw_A 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPV 497 (806)
T ss_dssp HHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSS
T ss_pred HHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhh
Confidence 99988887665554444334444455667888899999999989888888889999999999999999999999999999
Q ss_pred CChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEe
Q 042193 481 EHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 560 (784)
Q Consensus 481 ~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iD 560 (784)
.+++.+..+++.++.++||+||||||||+||+++|++++.+|+.++++++.++|+|++++.++.+|+.++...|||+|||
T Consensus 498 ~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iD 577 (806)
T 1ypw_A 498 EHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp SSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCS
T ss_pred hchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHH
Q 042193 561 ELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIF 640 (784)
Q Consensus 561 Eid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il 640 (784)
|||++...|+...++..+...+++++||++||++....+++||+|||+|+.||+|++|||||+..|+||+|+.++|.+||
T Consensus 578 Eid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il 657 (806)
T 1ypw_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 657 (806)
T ss_dssp SHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHT
T ss_pred ChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHH
Confidence 99999988865433333467899999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHH
Q 042193 641 KACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFE 720 (784)
Q Consensus 641 ~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 720 (784)
+.++++.++..++++..+++.+.||||+||.++|++|++.|+++.++..........................|+.+||+
T Consensus 658 ~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~ 737 (806)
T 1ypw_A 658 KANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 737 (806)
T ss_dssp TTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSC
T ss_pred HHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHH
Confidence 99999999988999999999999999999999999999999998776543322111110000000111234579999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCC---------CccccCCCCCCCCCCCCCCCCCCC
Q 042193 721 ESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSDFRFPDR---------TESATAGAADFFSSAIADDDDLYN 784 (784)
Q Consensus 721 ~al~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 784 (784)
+|++.++|+++++++++|++|.++|+.++||++ |.+|.. -+..++|...|= -.|||||||
T Consensus 738 ~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 806 (806)
T 1ypw_A 738 EAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYT---EDNDDDLYG 806 (806)
T ss_dssp CCCCC--------------------------------------------------------------------
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHhhccCCc-eecCCcccccCCCCCCCCCCCCCCCCC---cccchhhcC
Confidence 999999999999999999999999999999998 887543 222233333332 578899997
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.5e-62 Score=548.95 Aligned_cols=468 Identities=78% Similarity=1.260 Sum_probs=415.4
Q ss_pred CCCCCCceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCC
Q 042193 1 SKKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLG 80 (784)
Q Consensus 1 ~~~~~~~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g 80 (784)
+++|+|++|+|+++.+++.++|||||++|.+|||.+||+|.|+|++++.++||+||+++++++.|+||+.+|.|+|+++|
T Consensus 18 ~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~g 97 (489)
T 3hu3_A 18 KQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (489)
T ss_dssp CCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTT
T ss_pred hcccCCCeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCC
Confidence 57899999999999998889999999999999999999999999988889999999988999999999999999999999
Q ss_pred CeeeEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeC
Q 042193 81 DLVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVA 160 (784)
Q Consensus 81 ~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~ 160 (784)
|+|+|+++..++.+++|++.|+...+..+....++.+.+++.....+++..|+.+.+.++++.+.|++...+|..++.++
T Consensus 98 d~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (489)
T 3hu3_A 98 DVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVA 177 (489)
T ss_dssp CEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEEC
T ss_pred CEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEEc
Confidence 99999998789999999999988776655555777788888877778889999999998888899999999999999999
Q ss_pred CCceEEEcCCCCccchhhhhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHH
Q 042193 161 PDTEIFCEGEPVKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARA 240 (784)
Q Consensus 161 ~~t~i~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~ 240 (784)
++|.+.+.+.+.......+....++|++|+|+++++++|++++..++.+|+++..+++.++.++||+||||||||++|++
T Consensus 178 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 178 PDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp TTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHH
Confidence 99999888777654433345677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 042193 241 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320 (784)
Q Consensus 241 la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 320 (784)
++++++.+++.++|.++.+.+.|+.+..++.+|+.+....|++|||||+|.++++++...++...++..+|+..|++...
T Consensus 258 ia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp HHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999998877778889999999999999888
Q ss_pred CCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHH
Q 042193 321 RAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTE 400 (784)
Q Consensus 321 ~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~ 400 (784)
...++||++||+++.+++++++++||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+.||+++|+..+|++
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~ 417 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhh
Q 042193 401 AALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETV 468 (784)
Q Consensus 401 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~ 468 (784)
|++.++++....++........+......++.+||..++..+.|+.+++...+.|+++|+||||....
T Consensus 418 A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred HHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 99999988777666655555555556678999999999999999999999999999999999998653
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-55 Score=472.82 Aligned_cols=274 Identities=39% Similarity=0.690 Sum_probs=247.7
Q ss_pred CcccccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcE
Q 042193 443 NPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANF 522 (784)
Q Consensus 443 ~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 522 (784)
.|........+.|+++|+||||++++|+.|++.+.+|+.+|+.|..+|+++++|+|||||||||||++|+++|++++.+|
T Consensus 131 ~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 131 DPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp SCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 35555566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEE
Q 042193 523 VSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFI 602 (784)
Q Consensus 523 i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 602 (784)
+.++++++.++|+|++++.++.+|+.|+...||||||||||++++.|....+.......+++++||++||++....+|+|
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 99999999999999999999999999999999999999999999988765444444567899999999999999999999
Q ss_pred EEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 603 IGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 603 i~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
|||||+|+.||||++||||||+.|+||+|+.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHH
Q 042193 683 RENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLF 741 (784)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~ 741 (784)
++. ...|+++||+.|++++.++..+..+..++.|
T Consensus 371 r~~-------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 371 RER-------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HTT-------------------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HcC-------------------------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 864 2369999999999998766555556555554
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-53 Score=456.66 Aligned_cols=261 Identities=37% Similarity=0.666 Sum_probs=244.8
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
...+.|+++|+||||++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
+.++|+|++++.++.+|..|+...||||||||||+++..|............+++++||++||+.....+++||||||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999997665555566788999999999999999999999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKD 689 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 689 (784)
+.||||++||||||+.|+||+||.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred HHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHH
Q 042193 690 IERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADI 735 (784)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~ 735 (784)
...|+.+||++|++++.++.+++.+
T Consensus 408 ---------------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 ---------------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp ---------------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------------------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 2369999999999998776665443
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-52 Score=455.88 Aligned_cols=269 Identities=40% Similarity=0.678 Sum_probs=245.1
Q ss_pred ccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEe
Q 042193 447 LRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVK 526 (784)
Q Consensus 447 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~ 526 (784)
......+.|+++|+||||++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.++
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec
Q 042193 527 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 606 (784)
Q Consensus 527 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT 606 (784)
++++.++|+|++++.++.+|..|+...||||||||||++++.|............+++++||++|||+....+++|||||
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 99999999999999999999999999999999999999999987655555566788999999999999998999999999
Q ss_pred CCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 607 NRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 607 n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
|+|+.||||++||||||+.|+||+|+.++|.+||+.++++.++..++|+..+|+.|+||||+||.++|++|++.|+++.
T Consensus 328 Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~- 406 (437)
T 4b4t_L 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD- 406 (437)
T ss_dssp SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHH
Q 042193 687 EKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQL 740 (784)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~ 740 (784)
...|+.+||..|++++.|+...+....|++
T Consensus 407 ------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 407 ------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp ------------------------CSSBCHHHHHHHHHHHHHTCC---------
T ss_pred ------------------------CCCCCHHHHHHHHHHHHhccCcccchhhhc
Confidence 236999999999999988877766666654
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-52 Score=451.80 Aligned_cols=266 Identities=34% Similarity=0.657 Sum_probs=239.2
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
..+.|+++|+||||++++|+.|++.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 610 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~ 610 (784)
.++|+|++++.++.+|..|+...||||||||+|.++..|+...........+++++||++||+.....+|+||||||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999876544444556788999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDI 690 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 690 (784)
.||||++||||||+.|+||+|+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCC-HHHHHHHHHH
Q 042193 691 ERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVS-DADIRKYQLF 741 (784)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~-~~~~~~~~~~ 741 (784)
...|+.+||+.|++++.++.. .....+|.+|
T Consensus 435 --------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 435 --------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp --------------------CSSBCHHHHHHHHHHHHHHHCC----------
T ss_pred --------------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 236999999999998744322 2344556665
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-51 Score=450.76 Aligned_cols=258 Identities=38% Similarity=0.654 Sum_probs=242.6
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
...+.|+++|+||||++++|+.|.+.+.+|+.+++.|.++|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
+.++|+|++++.++.+|..|+...||||||||||++++.|..+.........+++++||++||++....+|+||||||+|
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999987654433445678899999999999988999999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKD 689 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 689 (784)
+.||||++||||||+.|+||+|+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCH
Q 042193 690 IERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSD 732 (784)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~ 732 (784)
...|+.+||.+|+++++|+.+.
T Consensus 407 ---------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 ---------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp ---------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred ---------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 2369999999999999998763
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-51 Score=448.95 Aligned_cols=263 Identities=40% Similarity=0.675 Sum_probs=245.8
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
..+.|+++|+||||++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 610 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~ 610 (784)
.++|+|++++.++.+|..|+...|||+||||+|+++..|............+++++||++|||+....+++||||||+|+
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999999976655556677899999999999999889999999999999
Q ss_pred CCCccccCCCCcccccccC-CCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIP-LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKD 689 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~-~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 689 (784)
.||||++||||||+.|+|| +|+.++|..||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~---- 398 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---- 398 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
Confidence 9999999999999999997 89999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHhhccccCCCCccccccCcccccHHHHHHHHhh-ccCCCCHHHHHHH
Q 042193 690 IERERSGKRKRENPEAMEVDDVDEITAAHFEESMKY-ARRSVSDADIRKY 738 (784)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~-~~~s~~~~~~~~~ 738 (784)
...|+.+||++|+.. ++++.+.+++++|
T Consensus 399 ---------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 ---------------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred ---------------------CCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 236999999999976 6777776665544
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.7e-44 Score=383.95 Aligned_cols=297 Identities=80% Similarity=1.276 Sum_probs=260.5
Q ss_pred ccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEe
Q 042193 447 LRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVK 526 (784)
Q Consensus 447 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~ 526 (784)
+++...+.|.++|++++|++.+++.|.+.+.+|+.+++.|..+++.+++++||+||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec
Q 042193 527 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 606 (784)
Q Consensus 527 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT 606 (784)
++++.++|+|++++.++.+|+.++...|++|||||||.+...|+....+..+...+++++||..|+++....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999886554444556788999999999998888899999999
Q ss_pred CCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 607 NRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 607 n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
|+|+.||++++|||||+..+++++|+.++|.+||+.++++.++..++++..++..+.||+|+||.++|++|++.|+++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999876
Q ss_pred HHHHHHHhhccccCCCCcccc---ccCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 042193 687 EKDIERERSGKRKRENPEAME---VDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQ 746 (784)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 746 (784)
........... ..+..++ ......|+++||+.|++.++|+++++++.+|++|.++|.
T Consensus 242 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQ---TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC-----------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred Hhhhhhhhhcc---cccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 54321110000 0000010 112347999999999999999999999999999999983
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-44 Score=387.77 Aligned_cols=248 Identities=43% Similarity=0.766 Sum_probs=230.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++++++.|++.+.+|+.||++|+.+|+.+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+++..++.+|+.|....||||||||+|.+++++....+ ....+++.+|++.||++....+|+||+|||+|+.+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 999999999999999999999999999999999998765432 23467889999999999999999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
||+++|+|||++.|+++.|+.++|.+||+.+++++++..++++..+|..|+||+|+||..+|++|++.++++.
T Consensus 301 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~------- 373 (405)
T 4b4t_J 301 DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER------- 373 (405)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNP 444 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~p 444 (784)
...++.+||..|+..+.+
T Consensus 374 ----------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 374 ----------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp ----------CSBCCHHHHHHHHHHHHH
T ss_pred ----------CCCcCHHHHHHHHHHHhC
Confidence 234778899888876543
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-43 Score=380.62 Aligned_cols=249 Identities=45% Similarity=0.746 Sum_probs=230.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++++++.|++.+.+|+.+|++|+.+|+.+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+++..++.+|+.|....||||||||+|.++.++..... ....+++.+|++.+|++....+|+||+|||+|+.|
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 999999999999999999999999999999999998854332 23456788999999999988999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
|++++|+|||++.|+++.|+.++|.+||+.+++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~------ 408 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR------ 408 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCcc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNPS 445 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps 445 (784)
..++.+||..|++.+.++
T Consensus 409 -----------~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 409 -----------MQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -----------SCBCHHHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHhCC
Confidence 347788999888766544
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=373.07 Aligned_cols=292 Identities=34% Similarity=0.629 Sum_probs=249.4
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-CCcEEEEecccc
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFVSVKGPEL 530 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~~~~i~v~~~~l 530 (784)
.+.|+++|+||+|++.+|+.|.+.+.+|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4678999999999999999999999999999999885 46778999999999999999999999999 899999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-CCCcEEEEEecCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNRP 609 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vi~aTn~~ 609 (784)
.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++|+..|+++. ...+++||+|||+|
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 999999999999999999999999999999999999877543 23567899999999999986 36789999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
+.||++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..|++.++||||+||.++|++|++.|+++....
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999887654 56789999999999999999999999999999987543
Q ss_pred HHHHHhhccccC---------------CCCc-------ccccc--CcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 042193 689 DIERERSGKRKR---------------ENPE-------AMEVD--DVDEITAAHFEESMKYARRSVSDADIRKYQLFAQT 744 (784)
Q Consensus 689 ~~~~~~~~~~~~---------------~~~~-------~~~~~--~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~ 744 (784)
.......+.... ..+. .+..+ ....|+++||+.|++.++||++++++++|++|.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~ 317 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTED 317 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 110000000000 0000 00111 12479999999999999999999999999999999
Q ss_pred Hhhcc
Q 042193 745 LQQSR 749 (784)
Q Consensus 745 ~~~~~ 749 (784)
|+.+|
T Consensus 318 ~~~~~ 322 (322)
T 1xwi_A 318 FGQEG 322 (322)
T ss_dssp TCSCC
T ss_pred HccCC
Confidence 98764
No 14
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-42 Score=379.28 Aligned_cols=251 Identities=38% Similarity=0.664 Sum_probs=232.9
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchH---HHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE---VERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+++..++.+|+.|....||||||||+|.++.++...... ...+++.+|++.||++....+|+||+|||+|+.+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999999988654332 3356778899999999998999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
||++.|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|..|+||+|+||..+|++|++.++++..
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~------ 407 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ------ 407 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
..++.+||..|+..+.|+..
T Consensus 408 -----------~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 -----------SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp -----------SSBCHHHHHHHHHSCSSSCC
T ss_pred -----------CCcCHHHHHHHHHHHhCCCC
Confidence 34778899999998877643
No 15
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-42 Score=375.16 Aligned_cols=246 Identities=43% Similarity=0.740 Sum_probs=228.1
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+++..++.+|..|....||||||||+|.++.+|..... ....+...+++..|+++....+|+||+|||+|+.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 999999999999999999999999999999999998865432 23456778899999999989999999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
|++++|+|||++.|+++.|+.++|.+||+.+++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~------ 435 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------ 435 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHhhhhcccccchhhhhhcccC
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+||..|++.+
T Consensus 436 -----------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 436 -----------KVATEKDFLKAVDKV 450 (467)
T ss_dssp -----------SSBCHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 236778888887765
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.8e-43 Score=408.97 Aligned_cols=284 Identities=38% Similarity=0.660 Sum_probs=248.1
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
..+.++|+||||++++++.|++.+.+|+.+++.|..+|..+++|+|||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|+|+++++++.+|+.|+...||||||||||+|++.|+... +....+++++||.+||++....+|+||+|||+|+.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999886532 346789999999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
|++++||||||+.|++++|+.++|.+||+.++++.++..++++..+|..|+||+|+||.++|++|++.|+++........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875432100
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHHhhccCC-----------CCHHHHHHHHHHHHHHhh
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS-----------VSDADIRKYQLFAQTLQQ 747 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s-----------~~~~~~~~~~~~~~~~~~ 747 (784)
.............|+.+||..|++.++|+ ++++++--+++..+++.+
T Consensus 434 --------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e 491 (806)
T 3cf2_A 434 --------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQE 491 (806)
T ss_dssp --------CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTT
T ss_pred --------ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHH
Confidence 00000000112368999999999998775 344444444555555543
No 17
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=380.32 Aligned_cols=249 Identities=40% Similarity=0.738 Sum_probs=230.4
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc---hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN---GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+++..++.+|..|....||||||||+|.++.++.... +....+++.+|++.||++....+++||+|||+|+.+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999999875432 233456788999999999988899999999999999
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 337 DPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
||+++|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|..|+||+|+||..+|++|++.++++..
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~------ 407 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR------ 407 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCcc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNPS 445 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps 445 (784)
..++.+||..|+..+.++
T Consensus 408 -----------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 -----------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -----------SSBCHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 246788898888876554
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=361.08 Aligned_cols=266 Identities=48% Similarity=0.870 Sum_probs=218.9
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
..|+++|+||||++++|+.|.+.+.+|+.+++.++.+++.+++|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
+|.|++++.++.+|+.++...|+++|+||+|.+...|+.. ..+...+++++++.+|++......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 9999999999999999999999999999999988766432 1223457889999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcc---CCCCCccCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK---SPISPDVDLSALARYT--HGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
|++++||||||+.|++++|+.++|.+||+.+++. .++..++++..+|..+ +||||+||.++|++|++.|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854 3566788999999874 5999999999999999999987643
Q ss_pred HHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHH
Q 042193 688 KDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADI 735 (784)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~ 735 (784)
..... .......|+++||++|++.++||++.+++
T Consensus 240 ~~~~~--------------~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKSG--------------NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hcccc--------------ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 32100 00112369999999999999999998764
No 19
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-41 Score=370.89 Aligned_cols=245 Identities=43% Similarity=0.686 Sum_probs=227.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|+||||++++++.|++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|++++.+++.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc---hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN---GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSI 336 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~l 336 (784)
+|.|+++..++.+|..|....|||+||||+|.++..+.... +....+++.+|++.||++....+++||+|||+|+.+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999998874432 234567899999999999998999999999999999
Q ss_pred CHHHHhcCCcceEEEeC-CCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccc
Q 042193 337 DPALRRFGRFDREIDIG-VPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL 415 (784)
Q Consensus 337 d~al~r~~rf~~~i~i~-~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 415 (784)
||+++|+|||++.|+++ .|+..+|.+||+.+++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~----- 399 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----- 399 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 99999999999999996 899999999999999999999999999999999999999999999999999987632
Q ss_pred ccchhhHhhhhcccccchhhhhhccc
Q 042193 416 EDETIDAEVLNSMAVTNEHFRTALEM 441 (784)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~d~~~al~~ 441 (784)
..++.+||..|+..
T Consensus 400 ------------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 400 ------------YVILQSDLEEAYAT 413 (428)
T ss_dssp ------------SSBCHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHH
Confidence 34677888888764
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6.9e-41 Score=361.16 Aligned_cols=294 Identities=35% Similarity=0.633 Sum_probs=246.3
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
...+.|+++|++++|++.+++.|.+.+.+|..+++.+.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 455678999999999999999999999999999988887 5677889999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-CCCcEEEEEecCC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNR 608 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vi~aTn~ 608 (784)
+.++|+|++++.++.+|+.++...|+||||||||.+...|+.. ......+++++|+..|+++. ...+++||+|||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999999877542 23467889999999999884 5678999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 609 PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 609 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
|+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..|++.++||+|+||.++|++|++.|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999887654 5678999999999999999999999999999998754
Q ss_pred HHHHHHh----hccc-----cCCCCc-------cccc--cCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcc
Q 042193 688 KDIERER----SGKR-----KRENPE-------AMEV--DDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSR 749 (784)
Q Consensus 688 ~~~~~~~----~~~~-----~~~~~~-------~~~~--~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~~ 749 (784)
....... .... ....+. .+.. .....|+++||.+|++.++||++.+++++|++|.++|+.+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 321 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3100000 0000 000000 0001 11247999999999999999999999999999999999876
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=4.4e-40 Score=358.91 Aligned_cols=293 Identities=35% Similarity=0.632 Sum_probs=237.1
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
....+.+.|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34567899999999999999999999999999998887 66778899999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC-CCcEEEEEecCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA-KKTVFIIGATNRP 609 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vi~aTn~~ 609 (784)
.+.|+|++++.++.+|..++...|+||||||||.+...|+.. ......+++++||..|+++.. ..+++||+|||+|
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999999877542 235678899999999998864 5689999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
+.||++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..|++.++||+|+||.++|++|++.|+++....
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999887653 56789999999999999999999999999999986532
Q ss_pred HHHHHhhcc--------c-cCCCCc-------cccc--cCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcc
Q 042193 689 DIERERSGK--------R-KRENPE-------AMEV--DDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSR 749 (784)
Q Consensus 689 ~~~~~~~~~--------~-~~~~~~-------~~~~--~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~~ 749 (784)
.......+. . ....+. .+.. .....|+++||..|++.++||++.+++..|++|.++|+.+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~~ 354 (355)
T 2qp9_X 276 THFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 354 (355)
T ss_dssp SEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC---
T ss_pred hhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 100000000 0 000000 0000 12346999999999999999999999999999999998775
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.3e-39 Score=365.44 Aligned_cols=293 Identities=34% Similarity=0.626 Sum_probs=239.7
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-CCcEEEEeccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFVSVKGPE 529 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~~~~i~v~~~~ 529 (784)
....+.+.|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 44578899999999999999999999999999988875 45677899999999999999999999999 89999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC-CCcEEEEEecCC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA-KKTVFIIGATNR 608 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vi~aTn~ 608 (784)
+.+.|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++||..|+++.. ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998876543 245678999999999999753 578999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 609 PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 609 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
|+.||++++| ||+..+++++|+.++|..||+.+++..+.. .+.++..|++.++||||+||.++|++|++.|+++.+.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887653 5678999999999999999999999999999998754
Q ss_pred HHHHHHhhcccc---------------CCCCc-------ccccc--CcccccHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 042193 688 KDIERERSGKRK---------------RENPE-------AMEVD--DVDEITAAHFEESMKYARRSVSDADIRKYQLFAQ 743 (784)
Q Consensus 688 ~~~~~~~~~~~~---------------~~~~~-------~~~~~--~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~ 743 (784)
........+... ...+. .++.+ ...+|+++||..|++.++||++++++..|++|.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~ 438 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 311000000000 00000 00111 1247999999999999999999999999999999
Q ss_pred HHhhcc
Q 042193 744 TLQQSR 749 (784)
Q Consensus 744 ~~~~~~ 749 (784)
+|+.+|
T Consensus 439 ~~~~~~ 444 (444)
T 2zan_A 439 DFGQEG 444 (444)
T ss_dssp SCTTTC
T ss_pred HHcCCC
Confidence 998764
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.3e-36 Score=333.98 Aligned_cols=249 Identities=41% Similarity=0.772 Sum_probs=221.4
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
.+.++|+|++|++++++.+.+.+.+ +.++..+..++.++++|+||+||||||||++|+++|++.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4578899999999999999998775 567888999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
|+|.++..++.+|..++...||||||||||.+...|+...+.......+++++||.+|+++....+++||+|||+|+.||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999987754322223445678999999999987778899999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERE 693 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 693 (784)
++++|||||++.|++++|+.++|.+|++.++++.++..++++..+++.+.||+|+||.++|++|+..|.+++
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-------- 240 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG-------- 240 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999988888999999999999999999999999999887543
Q ss_pred hhccccCCCCccccccCcccccHHHHHHHHhhccC
Q 042193 694 RSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR 728 (784)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 728 (784)
...|+.+||.+|+..+.+
T Consensus 241 -----------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 -----------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -----------------CSSBCHHHHHHHHHHHC-
T ss_pred -----------------CCeecHHHHHHHHHHHhc
Confidence 236999999999998743
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.1e-34 Score=302.53 Aligned_cols=249 Identities=41% Similarity=0.781 Sum_probs=219.1
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
.+...|++++|++.+++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|+.++.+++.++++++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4678899999999999999988765 667778888899999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
+.|..++.++.+|+.+....|+++||||+|.+...++...........++++++|..|++.....+++||+|||+++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 99999999999999999999999999999999887654322223344578999999999988888899999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERE 693 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 693 (784)
++++|+|||++.+++++|+.++|.+|++.+++..++..+.++..++..+.|||++||.++|++|+..|.++.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-------- 236 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 236 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999999888888889999999999999999999999999887643
Q ss_pred hhccccCCCCccccccCcccccHHHHHHHHhhccC
Q 042193 694 RSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR 728 (784)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 728 (784)
...|+.+||++|++.+..
T Consensus 237 -----------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 -----------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -----------------CSSBCHHHHHHHHHHHTT
T ss_pred -----------------CCcccHHHHHHHHHHHhc
Confidence 236999999999988753
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.2e-35 Score=310.64 Aligned_cols=271 Identities=45% Similarity=0.770 Sum_probs=230.1
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
..+.+.|++++|++.+++.|.+.+..++.+++.+..+++.++.++||+||||||||++|+++|..++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
.+.|..+..++.+|..++...|+||||||+|.+...|............+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999998775432222334567788889999988877899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
|++++|++||+..+++++|+.++|.+||+.+++..++..+.++..++..+.|+++++|.++|+.|...|+.+.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------- 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------- 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999888888899999999999999999999999999998754
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHhhc
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR--SVSDADIRKYQLFAQTLQQS 748 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~--s~~~~~~~~~~~~~~~~~~~ 748 (784)
...|+.+||.+|++.+.+ +.+...-..|..|..+|++-
T Consensus 243 ------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 243 ------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp ------------------CSSBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred ------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 236999999999998743 34445567777888887654
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=320.42 Aligned_cols=277 Identities=36% Similarity=0.664 Sum_probs=234.6
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
...+.+.|++++|++.+++.|.+.+.+|+.+++.+...+ .+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT 154 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhh
Confidence 345678999999999999999999999988888887654 5678899999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC--CCcEEEEEecCCC
Q 042193 532 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA--KKTVFIIGATNRP 609 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vi~aTn~~ 609 (784)
+.|.|+.++.++.+|..++...|+||||||||.+...|... ......+++++||..|++... ..+++||+|||++
T Consensus 155 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 155 SKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999998876432 234677899999999998753 4689999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 610 DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 610 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
+.||++++| ||+..+++++|+.++|.+|++.+++..++. .+.++..+++.+.||+|+||..+|+.|+..++++....
T Consensus 232 ~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 232 QEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999 999999999999999999999999776543 34568899999999999999999999999998864211
Q ss_pred HHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 042193 689 DIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQ 747 (784)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~ 747 (784)
.. ..........|+.+||..|++.++|+++.++++.|++|.++|+.
T Consensus 310 ~~-------------~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 310 DI-------------ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp ----------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred hh-------------ccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 10 00111223579999999999999999999999999999999975
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-35 Score=312.57 Aligned_cols=278 Identities=35% Similarity=0.641 Sum_probs=230.8
Q ss_pred cccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 452 VEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 452 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
...+.+.|++++|++.+++.|.+.+.+|..+++.+..++ .++.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345788999999999999999999999988888887655 4578899999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCC---CcEEEEEecCC
Q 042193 532 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAK---KTVFIIGATNR 608 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~---~~v~vi~aTn~ 608 (784)
+.|.|..+..++.+|..+....|++|||||+|.+...+... ......+++++|+..+++.... .+++||++||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 99999999999999999999999999999999998876532 1335578889999999987643 57999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 609 PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 609 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
|+.+|++++| ||+..+++++|+.++|..|++.+++..+.. .+.++..+++.+.|++|++|.++|++|+..|+++...
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999998876543 3456889999999999999999999999999886422
Q ss_pred HHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 042193 688 KDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQS 748 (784)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~ 748 (784)
.... .........|+.+||..|++.++||++.+++..|++|.++|+..
T Consensus 247 ~~~~-------------~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 247 EQVK-------------CLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp --------------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred hhcc-------------cccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 1100 01111234799999999999999999999999999999999754
No 28
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=303.10 Aligned_cols=262 Identities=40% Similarity=0.704 Sum_probs=213.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.++|+||||++++++.|++.+.+|+.+++.++.+++..++|++|+||||||||||+++||++++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
+.++.+..++.+|+.+....|+++|+||++.++..++........++.++++..|++......++++++||+|+.+|+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 88999999999999998889999999999999876543222223456788999999988888899999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHHcC---CCcccchhhhHHHHhc--CCCcHHHHHHHHHHHHHHHHHhhcccccc
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHTKN---MKLAEDVDLERVARDT--HGYVGADLAALCTEAALQCIREKMDVIDL 415 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~---~~~~~~~~l~~la~~t--~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 415 (784)
+|+|||++.|+++.|+.++|.+||+.++++ .++..++++..++..+ +||+|+|+..+|++|++.++++.......
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998854 4456788899999875 59999999999999999988764321110
Q ss_pred ccchhhHhhhhcccccchhhhhhcccCCccccc
Q 042193 416 EDETIDAEVLNSMAVTNEHFRTALEMSNPSALR 448 (784)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 448 (784)
........++.+||..|+..+.|+..+
T Consensus 244 ------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 244 ------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCCCC--
T ss_pred ------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 011124578999999999999887654
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-34 Score=323.41 Aligned_cols=265 Identities=41% Similarity=0.748 Sum_probs=230.2
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMW 534 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 534 (784)
+.++|++++|++++++.+.+.+.+ +.++..+..+++..++|++|+||||||||+||+++|++++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999988765 5677889999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCc
Q 042193 535 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDP 614 (784)
Q Consensus 535 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~ 614 (784)
+|...+.++.+|+.++...||++||||||.+...|+...+.......+.++++|.+|++......++++++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999998776532111223445789999999999988788999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042193 615 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERER 694 (784)
Q Consensus 615 allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 694 (784)
+++||||||+.|+|++|+.++|.+||+.+++..++..++++..+|..+.|++|+||.++|++|+..|.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999998888889999999999999999999999999998886532
Q ss_pred hccccCCCCccccccCcccccHHHHHHHHhhccCC-------CC--HHHHHHHHHHHHHH
Q 042193 695 SGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS-------VS--DADIRKYQLFAQTL 745 (784)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s-------~~--~~~~~~~~~~~~~~ 745 (784)
...|+.+||++|++.+.+. ++ +..+..|++.....
T Consensus 256 ----------------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av 299 (499)
T 2dhr_A 256 ----------------RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHAL 299 (499)
T ss_dssp ----------------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHH
T ss_pred ----------------CCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHH
Confidence 2369999999999987543 22 33455566544443
No 30
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.1e-35 Score=328.56 Aligned_cols=264 Identities=39% Similarity=0.701 Sum_probs=233.3
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMW 534 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 534 (784)
+.+.|++++|++..++.|.+.+.+++.+++.|..++..++.++||+||||||||++|++++.+++.+|+.++++++.+.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCc
Q 042193 535 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDP 614 (784)
Q Consensus 535 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~ 614 (784)
+|+++..++.+|+.+....|++|||||||.+.+.|... ......+++++||..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876532 234567899999999999888889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042193 615 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERER 694 (784)
Q Consensus 615 allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 694 (784)
+++|+|||+..+++++|+.++|.+||+.+++..++..+.++..++..+.||+++||.++|++|++.|+++.....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i----- 430 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI----- 430 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC-----
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc-----
Confidence 999999999999999999999999999999999988888999999999999999999999999999988753210
Q ss_pred hccccCCCCcccc--ccCcccccHHHHHHHHhhccCCCC
Q 042193 695 SGKRKRENPEAME--VDDVDEITAAHFEESMKYARRSVS 731 (784)
Q Consensus 695 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~al~~~~~s~~ 731 (784)
........ ......|+++||+.|++.++|+..
T Consensus 431 -----~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 431 -----DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp -----CTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred -----cccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 00000000 011236999999999999877643
No 31
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.1e-33 Score=294.52 Aligned_cols=247 Identities=42% Similarity=0.790 Sum_probs=214.8
Q ss_pred ccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 451 VVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 451 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
....|.++|++++|++.++..+.+...+ ...+..+..+++..++|++|+||||||||||++++++.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456789999999999999999887664 456778899999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC
Q 042193 531 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 610 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~ 610 (784)
...+.+...+.++.+|+.+....|+++|+||+|.+...++...+.......+.+++++.+|++......++++++||.|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888899999999998888999999999999876643211122345678899999999988878899999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDI 690 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 690 (784)
.||++++|+|||++.+++++|+.++|.+||+.+++..++..++++..+++.+.|++|+||.++|++|+..|.++.
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~----- 240 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG----- 240 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999988888888899999999999999999999999998887643
Q ss_pred HHHhhccccCCCCccccccCcccccHHHHHHHH
Q 042193 691 ERERSGKRKRENPEAMEVDDVDEITAAHFEESM 723 (784)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al 723 (784)
...|+.+||++|+
T Consensus 241 --------------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 --------------------RRKITMKDLEEAA 253 (254)
T ss_dssp --------------------CSSBCHHHHHHHT
T ss_pred --------------------CCCcCHHHHHHHh
Confidence 1359999999886
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=311.04 Aligned_cols=280 Identities=35% Similarity=0.616 Sum_probs=228.0
Q ss_pred cccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 450 TVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 450 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
.....+.+.|++++|++.+++.|.+.+.++..+++.+..++ .++.++||+||||||||++|+++|.+++.+|+.+++.+
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34456788999999999999999999999988888887766 45788999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC--CCcEEEEEecC
Q 042193 530 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA--KKTVFIIGATN 607 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vi~aTn 607 (784)
+.+.|+|+.+..++.+|..++...|+||||||||.+...+... ......+++++|+..|++... ..+++||+|||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998876432 234578899999999998764 46799999999
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 608 RPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 608 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
+++.||++++| ||+..++|++|+.++|.+||+.++...+.. .+.++..+++.+.||++++|..+|+.|+..++++..
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999999776543 344688999999999999999999999999987632
Q ss_pred HHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 042193 687 EKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDADIRKYQLFAQTLQQS 748 (784)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~~~ 748 (784)
... ...+.......|+.+||..+++.++|+++.+.++.|++|.++|+..
T Consensus 339 ~~~-------------~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 339 PEQ-------------VKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp CC----------------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred hhh-------------hhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 110 0011112234799999999999999999999999999999999763
No 33
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=5e-33 Score=334.00 Aligned_cols=438 Identities=21% Similarity=0.308 Sum_probs=299.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++++.|.+++++.+.+.+.. ..+.++||+||||||||++++++++.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 3445688999999999988877643 246789999999999999999999987 55667
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMG 328 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 328 (784)
.++...+. ..+.|..+..++.+|+.+....+++|||||++.+.+.+....+.. ...+.+..+..+..+.+|+
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~------~~~~~L~~~l~~~~~~~I~ 320 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV------DAANLIKPLLSSGKIRVIG 320 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH------HHHHHHSSCSSSCCCEEEE
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH------HHHHHHHHHHhCCCeEEEE
Confidence 77766665 356788899999999999887889999999999987765432221 1223444444567788899
Q ss_pred EcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC------CCcccchhhhHHHHhcCCC-----cHH
Q 042193 329 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN------MKLAEDVDLERVARDTHGY-----VGA 392 (784)
Q Consensus 329 atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~------~~~~~~~~l~~la~~t~g~-----~~~ 392 (784)
+|+.++ .+|+++.+ ||. .+.++.|+.+++.+||+.+... ..+. +..+..++..+.+| .+.
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCch
Confidence 988643 56888988 897 6999999999999999876543 2222 22355566655554 444
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCccccc-----------
Q 042193 393 DLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWED----------- 461 (784)
Q Consensus 393 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~----------- 461 (784)
.+..++.+++......... .....++.+++..++..... +....+.|++
T Consensus 397 ~~i~lld~a~~~~~~~~~~-------------~~~~~v~~~di~~~~~~~~~-------ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVS-------------KRKKTVNVADIESVVARIAR-------IPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSC-------------CCCCSCCHHHHHHHHHHHSC-------CCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc-------------ccCCccCHHHHHHHHHHhcC-------CCccccchhHHHHHHHHHHHH
Confidence 5667777665432211000 01223555566555543211 1122333443
Q ss_pred ---ccchhhhhhhhccccccccCChhhhhhcccC----CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc-
Q 042193 462 ---IGGLETVKRELQETVQYPVEHPEKFEKFGLS----PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM- 533 (784)
Q Consensus 462 ---i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~- 533 (784)
+.|++.+++.+...+.. ...|+. +..++||+||||||||++|+++|..++.+++.++++++...
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~ 528 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH 528 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSS
T ss_pred HhhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchh
Confidence 44555555544443321 112332 33469999999999999999999999999999999987643
Q ss_pred -----------ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-------
Q 042193 534 -----------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN------- 595 (784)
Q Consensus 534 -----------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------- 595 (784)
|+|..+. +.+....+...++|+|||||+.+. ..+++.|++.|+...
T Consensus 529 ~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 529 TVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp CCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTE
T ss_pred hHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCC
Confidence 3332211 234455556667999999999752 568899999998531
Q ss_pred --CCCcEEEEEecCCCC-------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-
Q 042193 596 --AKKTVFIIGATNRPD-------------------------VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS- 647 (784)
Q Consensus 596 --~~~~v~vi~aTn~~~-------------------------~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~- 647 (784)
...+++||+|||.+. .++|++++ ||+.+|.|++|+.+++..|++.+++..
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~ 670 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQ 670 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHH
Confidence 124688999999854 57888888 999999999999999999999887532
Q ss_pred ------CC--C-CccCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 042193 648 ------PI--S-PDVDLSALARYT--HGFSGADITEICQRACKYAIRENIE 687 (784)
Q Consensus 648 ------~~--~-~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~~ 687 (784)
++ . .+.-+..|++.. .+++.+++.++++.+...++.+.+-
T Consensus 671 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 671 VQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp HHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 11 1 122266677654 4566899999999998877766543
No 34
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=100.00 E-value=3.3e-33 Score=274.84 Aligned_cols=190 Identities=68% Similarity=1.263 Sum_probs=162.7
Q ss_pred CCCCCceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCC
Q 042193 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGD 81 (784)
Q Consensus 2 ~~~~~~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 81 (784)
++|+||+|+|++|.++++|+|||||++|++|||.+||+|+|+|++++.++|.+||.++++.+.|+|++.+|+|+|+++||
T Consensus 22 ~~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 101 (211)
T 3qwz_A 22 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 101 (211)
T ss_dssp ----CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred cccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 68999999999999988999999999999999999999999998877899999998899999999999999999999999
Q ss_pred eeeEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeCC
Q 042193 82 LVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAP 161 (784)
Q Consensus 82 ~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~ 161 (784)
.|+|+++++++.|++|+|+|...++.++.++++..+|++||...++||.+||.|.+.+.++.+.|+|++++|.++|+|++
T Consensus 102 ~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~g~viV~~ 181 (211)
T 3qwz_A 102 VISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAP 181 (211)
T ss_dssp EEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESSSEEEECT
T ss_pred EEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCCCCEEECC
Confidence 99999986789999999999987766566677889999999866899999999999888888999999999999999999
Q ss_pred CceEEEcCCCCccchhhhhcCCCCcccccC
Q 042193 162 DTEIFCEGEPVKREDEEERLNEVGYDDVGG 191 (784)
Q Consensus 162 ~t~i~~~~~~~~~~~~~~~~~~~~~~~i~G 191 (784)
+|.|.+.++|+.++..++..+.++|+||||
T Consensus 182 ~T~I~~~~~pv~~~~~e~~~~~VtYeDIGG 211 (211)
T 3qwz_A 182 DTVIHCEGEPIKREDEEESLNEVGYDDIGG 211 (211)
T ss_dssp TCEEECCSCCBCCCGGGSCCC---------
T ss_pred CcEEEEcCcccccccccccCCCcceeCCCC
Confidence 999999999887654434678899999998
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=294.92 Aligned_cols=227 Identities=39% Similarity=0.691 Sum_probs=208.0
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEechhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS 259 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-~~~~~~v~~~~l~~ 259 (784)
.+.++|+||+|++++++.|++.+.+|+.+|++|.. +..+++++||+||||||||++|+++|+++ +.+++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999999999999999999999999999875 35678999999999999999999999999 88999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCCCCCH
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~~ld~ 338 (784)
.+.|+.+..++.+|+.+....|++|||||+|.+++++.........++.++++..++++.. ..+++||++||+++.+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 9999999999999999999999999999999999988776666778899999999998763 578999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIREKM 410 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 410 (784)
+++| ||+..++++.|+.++|.+|++.++...... .+.++..++..++||+++|+..+|++|++.++++..
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999877653 677899999999999999999999999998887653
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.7e-32 Score=325.90 Aligned_cols=444 Identities=19% Similarity=0.291 Sum_probs=280.4
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++++.|.+++++++.+++.. ....++||+||||||||++|+++|+.+ +..++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3445688999999999998887654 235689999999999999999999997 66777
Q ss_pred EEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc
Q 042193 251 LINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT 330 (784)
Q Consensus 251 ~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at 330 (784)
.+++ ...+.|+.+..++.+|+.+....+++|||| . . ....+.|+.. ..+..+.+|++|
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-----~-----~~~~~~L~~~----l~~~~v~~I~at 298 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----A-----IDASNILKPS----LARGELQCIGAT 298 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCC----TTSSSCEEEEEC
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-----c-----hhHHHHHHHH----HhcCCEEEEeCC
Confidence 7776 456778888899999999999899999999 0 0 0112223322 335678999999
Q ss_pred CCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-----cchhhhHHHHhcC-----CCcHHHHH
Q 042193 331 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-----EDVDLERVARDTH-----GYVGADLA 395 (784)
Q Consensus 331 n~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-----~~~~l~~la~~t~-----g~~~~dl~ 395 (784)
|..+ .+++++++ || ..+.++.|+.+++.+||+.+...+... .+..+..++..+. ++.+....
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9888 78999999 99 459999999999999999776653321 2223455555443 45556666
Q ss_pred HHHHHHHHHHHHhhcc-cccccc--ch---h-------------------------------------hH-hhhhccccc
Q 042193 396 ALCTEAALQCIREKMD-VIDLED--ET---I-------------------------------------DA-EVLNSMAVT 431 (784)
Q Consensus 396 ~l~~~a~~~~~~~~~~-~~~~~~--~~---~-------------------------------------~~-~~~~~~~v~ 431 (784)
.++.+|+......... ...+.. .. + .. .......++
T Consensus 376 ~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 455 (758)
T 3pxi_A 376 DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVT 455 (758)
T ss_dssp HHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CC
T ss_pred HHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccC
Confidence 6777665433211110 000000 00 0 00 000011223
Q ss_pred chhhhhhcccCCccc---cc----ccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCC
Q 042193 432 NEHFRTALEMSNPSA---LR----ETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPG 504 (784)
Q Consensus 432 ~~d~~~al~~~~ps~---~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~G 504 (784)
.+++...+.....-. .. +........-..++.|++.+++.+...+....... . ..-.+..++||+||||
T Consensus 456 ~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~---~-~~~~p~~~~Ll~Gp~G 531 (758)
T 3pxi_A 456 VDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL---K-DPKRPIGSFIFLGPTG 531 (758)
T ss_dssp THHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC---S-CTTSCSEEEEEESCTT
T ss_pred HHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc---C-CCCCCceEEEEECCCC
Confidence 333333222211000 00 00000111113457788888777776655321100 0 0112223599999999
Q ss_pred CChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchH
Q 042193 505 CGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAAD 581 (784)
Q Consensus 505 tGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~ 581 (784)
||||++|+++|..+ +.+|+.++++++...+... .+.++...+...++|+|||||+.+. .
T Consensus 532 tGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~--------------~ 593 (758)
T 3pxi_A 532 VGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH--------------P 593 (758)
T ss_dssp SSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC--------------H
T ss_pred CCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC--------------H
Confidence 99999999999987 6799999999998776554 2334445556677899999998752 5
Q ss_pred HHHHHHHHHhhCCC---------CCCcEEEEEecCCCCC------------CCccccCCCCcccccccCCCCHHHHHHHH
Q 042193 582 RVLNQLLTEMDGMN---------AKKTVFIIGATNRPDV------------IDPALLRPGRLDQLIYIPLPDEASRLQIF 640 (784)
Q Consensus 582 ~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~~~------------ld~allr~gRf~~~i~~~~p~~~~r~~il 640 (784)
.+++.|++.|+... ...++++|+|||.+.. +.|++++ ||+.+|.|++|+.+++.+|+
T Consensus 594 ~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~ 671 (758)
T 3pxi_A 594 DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIV 671 (758)
T ss_dssp HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHH
T ss_pred HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHH
Confidence 68889999988632 2346799999997654 7888887 99999999999999999999
Q ss_pred HHHhccC-------CCC---CccCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 042193 641 KACLRKS-------PIS---PDVDLSALARY--THGFSGADITEICQRACKYAIRENI 686 (784)
Q Consensus 641 ~~~~~~~-------~~~---~~~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~~ 686 (784)
+.+++.. +.. .+.-+..|++. ...++.++|+++++.+...++.+.+
T Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 672 SLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 8877442 111 12225566653 3456778999999998887776654
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=292.66 Aligned_cols=249 Identities=39% Similarity=0.715 Sum_probs=199.0
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMW 534 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 534 (784)
|++.|++++|++.+++.+.+.+.+ ..+++.+..+|...++++||+||||||||++|+++|++++.+++.++++++...|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999988776 6677888888999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCC-CCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 535 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGD-AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 535 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~-~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
.+.++..++.+|+.+....|++|||||+|.+...|+..... ........++.++..+++.....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998776432111 12234567899999999887778999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD--LSALARYTHGFSGADITEICQRACKYAIRENIEKDIE 691 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 691 (784)
++++|+|||+..+++++|+.++|.+||+.+++..++..+.+ +..+++.+.|+++++|.++|++|+..|.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------ 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999998887765443 4789999999999999999999999887654
Q ss_pred HHhhccccCCCCccccccCcccccHHHHHHHHhhccCC
Q 042193 692 RERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS 729 (784)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 729 (784)
...|+.+||.+|++.+.++
T Consensus 234 -------------------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 234 -------------------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ----------------------CCBCCHHHHHHHHHHH
T ss_pred -------------------CCCCCHHHHHHHHHHhccC
Confidence 1258899999999887543
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=292.71 Aligned_cols=266 Identities=40% Similarity=0.730 Sum_probs=226.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.++|++|+|++++++.|++++.+|+.+|+.|.++++.++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.|+.+..++.+|+.+....|+++||||+|.+++.++.. .+....++..+|+..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 999999999999999999999999999999998765321 12233567788999999887778899999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
+++.|+|||+..++++.|+.++|.+|++.+++...+..++++..++..++||+|+|+..+|++|++.++++.........
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~ 248 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 248 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999998888777888999999999999999999999999888766432110000
Q ss_pred ch-------hhH-hhhhcccccchhhhhhcccCCccc
Q 042193 418 ET-------IDA-EVLNSMAVTNEHFRTALEMSNPSA 446 (784)
Q Consensus 418 ~~-------~~~-~~~~~~~v~~~d~~~al~~~~ps~ 446 (784)
.. ... .......++.+||..|+..+.|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 249 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp -----------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 00 000 001124688899999999887754
No 39
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=4.6e-32 Score=286.11 Aligned_cols=245 Identities=42% Similarity=0.794 Sum_probs=213.3
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
..+.++|++++|++++++.+.+...+ ...+..+..+++..++|++|+||||||||||++++++.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34788999999999999999887664 45677888899999999999999999999999999999999999999999988
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
.+.+...+.++.+|+.+....|+++|+||+|.+...+............+.+++++.+|++......++++++||.|+.|
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 88888888999999999988899999999999887654211111223467889999999998877789999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 613 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIER 692 (784)
Q Consensus 613 d~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 692 (784)
|++++|++||++.++|++|+.++|.+||+.+++..++..++++..++..+.|++|+||.++|++|+..|.++.
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------- 264 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------- 264 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999988888888899999999999999999999999998886542
Q ss_pred HhhccccCCCCccccccCcccccHHHHHHHH
Q 042193 693 ERSGKRKRENPEAMEVDDVDEITAAHFEESM 723 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al 723 (784)
...|+.+||++|+
T Consensus 265 ------------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ------------------RRKITMKDLEEAA 277 (278)
T ss_dssp ------------------CCSBCHHHHHHHT
T ss_pred ------------------CCCcCHHHHHHHh
Confidence 1359999999886
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.98 E-value=1.2e-31 Score=288.93 Aligned_cols=266 Identities=37% Similarity=0.639 Sum_probs=223.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
..++++|++|+|++++++.|++++.+|+.+|+.+.. +..++.++||+||||||||++|+++|++++.+++.+++.++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 357788999999999999999999999999998876 5567889999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCcEEEEEEcCCCCCCCH
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-SRAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~vivI~atn~~~~ld~ 338 (784)
.+.|+.+..++.+|+.+....|++|||||+|.+.+++.........++..+++..++++. ....++||++||.++.+|+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 999999999999999999999999999999999988765555566788899999999885 4568999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
++++ ||+..++++.|+.++|.+|++.++...... .+.++..++..++||+++|+..+|++|.+.++++.........
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 999999999999999999999999877643 5678999999999999999999999999888877543321100
Q ss_pred --------------------------chhhHhhhhcccccchhhhhhcccCCccccc
Q 042193 418 --------------------------ETIDAEVLNSMAVTNEHFRTALEMSNPSALR 448 (784)
Q Consensus 418 --------------------------~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 448 (784)
..+..+......++.+||..|++.+.|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 304 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 304 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCT
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCH
Confidence 0000111122458889999999988887543
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.98 E-value=3.3e-31 Score=288.82 Aligned_cols=264 Identities=37% Similarity=0.628 Sum_probs=217.0
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.++|++|+|++.+++.|++.+.+|+.+|+++.. +..++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999999999886 56778899999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCCCCCHH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPNSIDPA 339 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~~ld~a 339 (784)
+.|+.+..++.+|..+....|++|||||+|.+.+.+........+++..+|+..++++.. ...++||++||+++.++++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999999887665556678889999999998754 4679999999999999999
Q ss_pred HHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccc---
Q 042193 340 LRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL--- 415 (784)
Q Consensus 340 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~--- 415 (784)
++| ||+..++++.|+.++|.+||+.++..... ..+.++..++..++||+++|+..+|++|++.++++.......
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 99999999999999999999999987764 357789999999999999999999999999988764321100
Q ss_pred -----------------------ccchhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 416 -----------------------EDETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 416 -----------------------~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
....+..+......++.+||..|+..+.|+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 00001111122345888999999999888754
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=1.9e-33 Score=295.22 Aligned_cols=255 Identities=38% Similarity=0.700 Sum_probs=217.1
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
+.+.+.|++++|++.+++.+.+.+.+ +.+++.+..++...++++||+||||||||++|+++|.+++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 35678899999999999999998775 67888999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCC-CCCCCchHHHHHHHHHHhhCCCC-CCcEEEEEecCCCC
Q 042193 533 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASV-GDAGGAADRVLNQLLTEMDGMNA-KKTVFIIGATNRPD 610 (784)
Q Consensus 533 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vi~aTn~~~ 610 (784)
.+.|.++..++.+|+.+....|++|||||+|.+...|.... ........+++++|+..|++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99999888889999999999999999999999987653211 01112233467888888887654 34699999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDI 690 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 690 (784)
.+|++++|+|||+..++|++|+.++|.+||+.+++..++..+.++..+++.+.|++|+||.++|+.|+..|..+.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~----- 237 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN----- 237 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999998888888889999999999999999999999998775422
Q ss_pred HHHhhccccCCCCccccccCcccccHHHHHHHHhhccCCCCHH
Q 042193 691 ERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRSVSDA 733 (784)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~ 733 (784)
...|+.+||.+|++.+.|+...+
T Consensus 238 --------------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 238 --------------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp --------------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred --------------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 23699999999999998887654
No 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.97 E-value=1.4e-30 Score=315.37 Aligned_cols=458 Identities=23% Similarity=0.324 Sum_probs=279.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++++.|.++.+.++.+++.. ..+.+++|+||||||||++++.+|+.+ +..++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 3456788999999999888877643 235679999999999999999999987 77889
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHhc-CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
.+++..+. ..+.|+.+..++.+|..+... .|++|||||+|.+.+....... ..+.+.|...+ .+..+.+|
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l----~~~~i~~I 303 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPAL----ARGELRLI 303 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEE
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHH----hCCCeEEE
Confidence 99988876 467788899999999998875 6899999999999866533211 12223344444 34567788
Q ss_pred EEcCCCC----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC------CcccchhhhHHHHhcC-----CCcHH
Q 042193 328 GATNRPN----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM------KLAEDVDLERVARDTH-----GYVGA 392 (784)
Q Consensus 328 ~atn~~~----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~------~~~~~~~l~~la~~t~-----g~~~~ 392 (784)
++|+.++ .+++++.+ ||.. +.++.|+.+++.+||+.+...+ .+. +..+..++..+. .|.+.
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChH
Confidence 8888764 47899988 8986 9999999999999998665432 222 233455555443 45555
Q ss_pred HHHHHHHHHHHHHHHhhc-------------cc-------ccccc--------------------------chhhHhh--
Q 042193 393 DLAALCTEAALQCIREKM-------------DV-------IDLED--------------------------ETIDAEV-- 424 (784)
Q Consensus 393 dl~~l~~~a~~~~~~~~~-------------~~-------~~~~~--------------------------~~~~~~~-- 424 (784)
....++.+|+........ .. ..... ..+..+.
T Consensus 380 kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREI 459 (854)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655432211100 00 00000 0000000
Q ss_pred h--------------------------------------------------------hcccccchhhhhhcccCCccc--
Q 042193 425 L--------------------------------------------------------NSMAVTNEHFRTALEMSNPSA-- 446 (784)
Q Consensus 425 ~--------------------------------------------------------~~~~v~~~d~~~al~~~~ps~-- 446 (784)
. -...+..+++...+.....-.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~ 539 (854)
T 1qvr_A 460 LRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVS 539 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChH
Confidence 0 000111111211111110000
Q ss_pred -c----cccccccCCcccccccchhhhhhhhccccccccCChhhhhhccc----CCCceeEEEcCCCCChhHHHHHHHHH
Q 042193 447 -L----RETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGL----SPSKGVLFYGPPGCGKTLLAKAIANE 517 (784)
Q Consensus 447 -~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~g~ll~Gp~GtGKT~la~~la~~ 517 (784)
+ .......+..-|.++.|.+.+++.+...+.... .|+ .+..++||+||||||||++|++++..
T Consensus 540 ~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 540 KLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 0 000000111224556777777777666554211 122 12246999999999999999999999
Q ss_pred h---CCcEEEEecccchhc------------ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHH
Q 042193 518 C---QANFVSVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADR 582 (784)
Q Consensus 518 ~---~~~~i~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 582 (784)
+ +.+|+.++++++... |+|..+ .+.+....+...+++||||||+.+. ..
T Consensus 612 ~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~ 675 (854)
T 1qvr_A 612 LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--------------PD 675 (854)
T ss_dssp HHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC--------------HH
T ss_pred hcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC--------------HH
Confidence 8 789999999877543 223221 1334444555667899999998752 56
Q ss_pred HHHHHHHHhhCCC---------CCCcEEEEEecCCC--------------------------CCCCccccCCCCcccccc
Q 042193 583 VLNQLLTEMDGMN---------AKKTVFIIGATNRP--------------------------DVIDPALLRPGRLDQLIY 627 (784)
Q Consensus 583 ~l~~ll~~ld~~~---------~~~~v~vi~aTn~~--------------------------~~ld~allr~gRf~~~i~ 627 (784)
+++.|++.|+... ...+++||+|||.+ ..+.|+|+. ||+.++.
T Consensus 676 ~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~ 753 (854)
T 1qvr_A 676 VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVV 753 (854)
T ss_dssp HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCB
T ss_pred HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEe
Confidence 8899999998542 12478899999972 246677777 9999999
Q ss_pred cCCCCHHHHHHHHHHHhccC-------CCC---CccCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 628 IPLPDEASRLQIFKACLRKS-------PIS---PDVDLSALARYTH--GFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 628 ~~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
|++|+.++...|++.+++.. ++. .+.-+..|+++.. .++.++|.++++.+...++.+.+..
T Consensus 754 ~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 826 (854)
T 1qvr_A 754 FRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 826 (854)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998877521 111 1223667777665 5788999999999998888776543
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=1e-30 Score=291.98 Aligned_cols=246 Identities=44% Similarity=0.745 Sum_probs=214.6
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+.++|++|+|++++++.+++++.. +.++..+..+++..++++||+||||||||++|++++++++.+++.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567899999999999999999876 678889999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.|.....++.+|+.+....|++|||||+|.+..+++.. ......+++.+|+..|+++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999999877532 12234567889999999887777899999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
+++.|++||++.+.++.|+.++|.+|++.+++..++..++++..++..+.||+++|+..+|++|+..+.++..
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~------- 241 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR------- 241 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999999999998888888899999999999999999999999887765421
Q ss_pred chhhHhhhhcccccchhhhhhcccCCc
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEMSNP 444 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~~~p 444 (784)
..++.+++..++..+.+
T Consensus 242 ----------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 ----------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ----------SSBCHHHHHHHHHHHC-
T ss_pred ----------CeecHHHHHHHHHHHhc
Confidence 23566777777766543
No 45
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.97 E-value=2e-30 Score=250.53 Aligned_cols=168 Identities=67% Similarity=1.253 Sum_probs=151.3
Q ss_pred CCCCCceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCC
Q 042193 2 KKKSPNRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGD 81 (784)
Q Consensus 2 ~~~~~~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 81 (784)
++|+||+|+|++|.++++|+|||||++|++|||.+||+|+|+|++++.++|.+||..+++.+.|+||+.+|+|+|+++||
T Consensus 19 ~~~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 98 (187)
T 3tiw_A 19 QKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 98 (187)
T ss_dssp ---CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred cccCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 68999999999999988999999999999999999999999999877899999998899999999999999999999999
Q ss_pred eeeEEecCCCCCCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeCC
Q 042193 82 LVSVHACPDVKYGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAP 161 (784)
Q Consensus 82 ~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~ 161 (784)
.|+|+++++++.|++|+|+|...++.++.++++..||++||.+.++||.+||.|.+.++++.+.|+|++++|.++|+|++
T Consensus 99 ~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~~~v~V~~ 178 (187)
T 3tiw_A 99 VISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAP 178 (187)
T ss_dssp EEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESSSEEECCT
T ss_pred EEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCCCCEEECC
Confidence 99999986789999999999977665566667889999999877899999999999988889999999999999999999
Q ss_pred CceEEEcC
Q 042193 162 DTEIFCEG 169 (784)
Q Consensus 162 ~t~i~~~~ 169 (784)
+|.|.+++
T Consensus 179 ~T~I~~eg 186 (187)
T 3tiw_A 179 DTVIHCEG 186 (187)
T ss_dssp TCEEECCC
T ss_pred CcEEEecC
Confidence 99998865
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=3.2e-30 Score=289.19 Aligned_cols=227 Identities=39% Similarity=0.697 Sum_probs=197.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEechhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS 259 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-~~~~~~v~~~~l~~ 259 (784)
.+.++|++|+|++.+++.|++++.+|+.+|++|.. +..++.++||+||||||||++|+++|+++ +.+++.++++++.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 46788999999999999999999999999998875 34677899999999999999999999999 88999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCCCCCH
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~~ld~ 338 (784)
.+.|+.+..++.+|+.+....|+||||||+|.+++.+.........++.++|+..++++.. ..+++||++||+++.+++
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~ 286 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCH
Confidence 9999998999999999999999999999999999887766666678899999999998753 568999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIREKM 410 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 410 (784)
+++| ||+..+.++.|+.++|..|++.++...+.. .+.++..++..+.||+++|+..+|++|++.++++..
T Consensus 287 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 287 AIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999877653 577899999999999999999999999998887653
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=6.7e-29 Score=262.87 Aligned_cols=245 Identities=54% Similarity=0.893 Sum_probs=216.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+++.|++|+|++++++.|++.+..++.+++.+..+++.++.++||+||||||||++|+++++.++.+++.+++.++...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCch---HHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG---EVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.+.....++.+|..+....|++|||||+|.+++++..... ......+..++..++++....++++|++||.++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 99999999999999999999999999999999887654322 222345556667777777777899999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
+++.+++||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++++..+|+.|...++.+..
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~------- 243 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR------- 243 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------
Confidence 9999999999999999999999999999999888888888899999999999999999999999988876532
Q ss_pred chhhHhhhhcccccchhhhhhcccC
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+|+..++..+
T Consensus 244 ----------~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 244 ----------DYVTMDDFRKAVEKI 258 (285)
T ss_dssp ----------SSBCHHHHHHHHHHH
T ss_pred ----------CcCCHHHHHHHHHHH
Confidence 235666777766654
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=8.4e-29 Score=258.06 Aligned_cols=244 Identities=41% Similarity=0.704 Sum_probs=208.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.++.+|++|+|+++.++.+.+++.. +.+++.++.++...+.+++|+|||||||||+++++++.++.+++.+++.++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4567899999999999999998876 778888888888899999999999999999999999999999999999999888
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..++++....+++||++||+++.++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 888899999999999998899999999999998876532 11223467788889999887778899999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
+++.+++||++.+.++.|+.++|.+|++.+++..++..+.++..++..+.||+++|+..+|.+|+..+..+..
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------- 237 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------- 237 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999888888888889999999999999999999999887765421
Q ss_pred chhhHhhhhcccccchhhhhhcccC
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEMS 442 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~~ 442 (784)
..++.+|+..++..+
T Consensus 238 ----------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 238 ----------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp ----------SSBCHHHHHHHHHHH
T ss_pred ----------CcccHHHHHHHHHHH
Confidence 235667777666543
No 49
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=2.6e-29 Score=282.22 Aligned_cols=246 Identities=42% Similarity=0.702 Sum_probs=215.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
+.++|++|+|+++++..+++++.. +.++..+..+++..++++||+||||||||+|+++|+++++.+++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 567899999999999999998875 6778889999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCH
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~ 338 (784)
.+.....++.+|+.+....|+++||||+|.+...++.. ......+.+++++..|++......++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888899999999988889999999999998776532 122335677889999998877778999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 418 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 418 (784)
++.|++||++.+.++.|+.++|.+||+.++++..+..++++..++..+.||+++|+..+|++|+..+.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999988888888899999999999999999999999987665421
Q ss_pred hhhHhhhhcccccchhhhhhcccCCcc
Q 042193 419 TIDAEVLNSMAVTNEHFRTALEMSNPS 445 (784)
Q Consensus 419 ~~~~~~~~~~~v~~~d~~~al~~~~ps 445 (784)
...++.+|+..++..+.+.
T Consensus 256 --------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 256 --------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp --------CSSCCSHHHHHHHHHHTTC
T ss_pred --------CCccCHHHHHHHHHHHhcc
Confidence 1246777888887766544
No 50
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.1e-28 Score=295.08 Aligned_cols=265 Identities=38% Similarity=0.696 Sum_probs=230.8
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
.+.++|++|+|++.+++.|.+.+.+|+.+++.|..+++.++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCC
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVID 613 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld 613 (784)
+.|+.+..++.+|+.+....|+++|+||||.+...|+.. ......+++++|+..|++......+++|+|||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 999999999999999999999999999999999876542 23356788999999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042193 614 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERE 693 (784)
Q Consensus 614 ~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 693 (784)
+++.|+|||+..+.++.|+.++|.+||+.+++...+..+.++..++..+.||+++++..+|++|+..++++.........
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999999888889999999999999999999999999988876432100000
Q ss_pred hhccccCCCCccccccCcccccHHHHHHHHhhccCC
Q 042193 694 RSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS 729 (784)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 729 (784)
.. ... .......++.++|..++....|+
T Consensus 435 ~~-----~~~---~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 435 ET-----IDA---EVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HH-----CCH---HHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hc-----cch---hhhhhhhhhhhhhhccccccCch
Confidence 00 000 00012357888999999887764
No 51
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=1.6e-27 Score=247.85 Aligned_cols=227 Identities=45% Similarity=0.761 Sum_probs=197.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.+..+|++++|+++.+..++++... +.++..+..+++..++|++|+||||||||||++++++.++..++.+++.++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 4667899999999999999887765 567788899999999999999999999999999999999999999999998888
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld 337 (784)
+.+.....++.+|+.+....|+++++||+|.+...+... ......+.+.+++..+++......++++++||.|+.+|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 888888889999999988889999999999998765431 12233556778888888877777789999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
+++.|++||++.++++.|+.++|.+||+.+.+...+..+.++..++..+.||+++|+..++++|+..+.++
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888888888999999999999999999999998877653
No 52
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=252.19 Aligned_cols=243 Identities=40% Similarity=0.666 Sum_probs=188.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhc
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 262 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~ 262 (784)
+++|++|+|+++.++.+++++.. +.+++.+..+++..+.++||+||||||||++|++++++++.+++.+++.++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46789999999999999998876 77888888899999999999999999999999999999999999999999988888
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc----hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCH
Q 042193 263 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN----GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 263 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~ 338 (784)
+.....++.+|+.+....|++|||||+|.+..++.... .......+..++..+++.....++++|++||.++.+++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88888999999999998999999999999987664321 11223456677777887766778999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccch--hhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDV--DLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~--~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
++.+++||+..++++.|+.++|.+|++.++....+..+. ....++..+.||+++++..++++|+..+.++.
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------- 233 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------- 233 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 999999999999999999999999999988776654433 35789999999999999999999987665432
Q ss_pred cchhhHhhhhcccccchhhhhhcccCC
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSN 443 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 443 (784)
...++.+|+..++..+.
T Consensus 234 ----------~~~i~~~d~~~a~~~~~ 250 (262)
T 2qz4_A 234 ----------HTSVHTLNFEYAVERVL 250 (262)
T ss_dssp -------------CCBCCHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHhc
Confidence 12356667776666543
No 53
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=1.7e-27 Score=253.68 Aligned_cols=260 Identities=37% Similarity=0.577 Sum_probs=211.6
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.++.+|++|+|++.+++.+++.+..+..+|+++..++ .++.++||+||||||||++|+++++.++.+++.+++.++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4567899999999999999999999999998887665 467899999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccC---CcEEEEEEcCCCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSR---AHVVVMGATNRPNSID 337 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~---~~vivI~atn~~~~ld 337 (784)
+.+.....++.+|..+....|++|||||+|.++..+.........++..+|+..+++.... ..+++|++||.++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 9999999999999999999999999999999998775443344466777888888876543 5699999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
+++++ ||+..+.++.|+.++|..|++.++..... ..+.++..++..+.||+++++..+|++|+..++++.......
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~- 250 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK- 250 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence 99998 99999999999999999999988876543 245568899999999999999999999988887654221100
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCccccc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNPSALR 448 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 448 (784)
.. .......++.+||..++..+.|+...
T Consensus 251 --~~--~~~~~~~i~~~d~~~a~~~~~~s~~~ 278 (297)
T 3b9p_A 251 --CL--DISAMRAITEQDFHSSLKRIRRSVAP 278 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCCCSSCH
T ss_pred --cc--cccccCCcCHHHHHHHHHHcCCCCCH
Confidence 00 00122458889999999988876543
No 54
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=255.56 Aligned_cols=259 Identities=36% Similarity=0.606 Sum_probs=211.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.++.+|++|+|++.+++.|++++.+|+.+++.+...+ .++.++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4567899999999999999999999999998877654 567899999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCcEEEEEEcCCCCCCCH
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS--RAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~vivI~atn~~~~ld~ 338 (784)
+.++.+..++.+|..+....|++|||||+|.+...+.........++..+++..+++... ..+++||++||.++.+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 999999999999999999999999999999999877655555667788889988887653 467999999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLED 417 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 417 (784)
++++ ||...++++.|+.++|.++++.++...... .+.++..++..+.||+++++..+|++|...++++......
T Consensus 237 ~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~--- 311 (357)
T 3d8b_A 237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI--- 311 (357)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC------
T ss_pred HHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh---
Confidence 9999 999999999999999999999888765432 4567899999999999999999999998888775321110
Q ss_pred chhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 418 ETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 418 ~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
..+. ......++.+||..++..+.|+..
T Consensus 312 ~~~~--~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 312 ATIT--PDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGGCC
T ss_pred cccc--ccccCCcCHHHHHHHHHhcCCCCC
Confidence 0000 112346788899999988877644
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=2.8e-26 Score=241.80 Aligned_cols=226 Identities=45% Similarity=0.766 Sum_probs=196.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 042193 182 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 261 (784)
Q Consensus 182 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~ 261 (784)
++.+|++++|+++.++.+.++... +.++..+..+++..+.+++|+||||||||||++++++.++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 567899999999999999887764 5667888899999999999999999999999999999999999999999988877
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCH
Q 042193 262 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDP 338 (784)
Q Consensus 262 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~ 338 (784)
.+.....++.+|+.+....|+++++||++.+...+... ......+.+.+++..+++......++++++||.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 78888889999999988889999999999987665321 112234566778888888776667899999999999999
Q ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 339 ALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 339 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
++.|++||+..++++.|+.++|.+||+.+.+...+..+.++..++..++||+++|+..++++|+..+..+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888888888999999999999999999999998876643
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.94 E-value=1.1e-27 Score=270.10 Aligned_cols=360 Identities=21% Similarity=0.236 Sum_probs=236.0
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhh
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSK 260 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~--~~~~~v~~~~l~~~ 260 (784)
...|++++|+++.++.+.+++... ..+..++.++||+||||||||++|+++|++++ .+++.++++++.+.
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 345789999999999988877531 12455778999999999999999999999999 89999999999999
Q ss_pred hcchhHHHHHHHHHHH---HhcCCeEEEeehhhhhcCCCCCCchHH----HH---------------HHHHHHHHHhh--
Q 042193 261 LAGESESNLRKAFEEA---EKNAPSIIFIDEIDSIAPKREKTNGEV----ER---------------RIVSQLLTLMD-- 316 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a---~~~~p~il~iDEid~l~~~~~~~~~~~----~~---------------~v~~~Ll~~ld-- 316 (784)
+.++.+. ++.+|+.+ ....|+++|+||+|.+++++....... .. ++...++..++
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 99999998 778899999999999998875442110 01 11122444443
Q ss_pred ccccCCcEEEEEEcCCCCCCCHHHHhcCCcce--EEEeCCCC--HHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHH
Q 042193 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDR--EIDIGVPD--EVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGA 392 (784)
Q Consensus 317 ~~~~~~~vivI~atn~~~~ld~al~r~~rf~~--~i~i~~p~--~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 392 (784)
+......++|+++||+++.+|+++.|++||++ .+.++.|+ ...|.+|++.++ ..+++.++..++| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LHDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HHHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HHHHHHHHHhCCC--hh
Confidence 22333446666999999999999999999998 55667774 467777776443 2368888888988 88
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhhhhhh
Q 042193 393 DLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKREL 472 (784)
Q Consensus 393 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l 472 (784)
|+.++|......... .+. ..+
T Consensus 255 dl~~l~~~i~~p~~~--------------------------~I~---------------------------------~~l 275 (456)
T 2c9o_A 255 DILSMMGQLMKPKKT--------------------------EIT---------------------------------DKL 275 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhcccchh--------------------------hHH---------------------------------HHH
Confidence 888877432100000 000 000
Q ss_pred ccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhh-
Q 042193 473 QETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQ- 551 (784)
Q Consensus 473 ~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~- 551 (784)
.+ ...+.+...++....
T Consensus 276 r~--------------------------------------------------------------~I~~~l~~~~~~g~~~ 293 (456)
T 2c9o_A 276 RG--------------------------------------------------------------EINKVVNKYIDQGIAE 293 (456)
T ss_dssp -C--------------------------------------------------------------HHHHHHHHHHHTTSEE
T ss_pred HH--------------------------------------------------------------HHHHHHHHHHHhcccc
Confidence 00 000001111111111
Q ss_pred CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEe---------cC---CCCCCCccccCC
Q 042193 552 SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA---------TN---RPDVIDPALLRP 619 (784)
Q Consensus 552 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~a---------Tn---~~~~ld~allr~ 619 (784)
..|.|+||||+|.+. ....+.|+..|+.... +++|+++ |+ .|+.|+|.+++
T Consensus 294 v~~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 294 LVPGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp EEECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred ccceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh-
Confidence 112599999999873 4578999999986543 3666666 33 26788999998
Q ss_pred CCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042193 620 GRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYT-HGFSGADITEICQRACKYAIRENIEKDIERERSGK 697 (784)
Q Consensus 620 gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~-~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 697 (784)
||.. +.|++|+.++..+|++..++..++. ++..+..+++.+ .| +.+....+++.|...|..++
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~------------ 421 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING------------ 421 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT------------
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC------------
Confidence 9976 5999999999999999887544432 222366777777 55 77777888888877776543
Q ss_pred ccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 698 RKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 698 ~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
...|+.+|+.+++..+
T Consensus 422 -------------~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 422 -------------KDSIEKEHVEEISELF 437 (456)
T ss_dssp -------------CSSBCHHHHHHHHHHS
T ss_pred -------------CCccCHHHHHHHHHHh
Confidence 2369999999999876
No 57
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=250.98 Aligned_cols=258 Identities=36% Similarity=0.575 Sum_probs=201.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
...++.|++|+|++.+++.|.+++.+++.+++++..++ .++.++||+||||||||++|+++|.+++.+++.+++.++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34567899999999999999999999999888887765 45789999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCcEEEEEEcCCCCCCC
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS--RAHVVVMGATNRPNSID 337 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~vivI~atn~~~~ld 337 (784)
.+.+..+..++.+|..+....|++|||||+|.++..+.........++...|+..+++... ...++||++||+++.++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 9999999999999999999999999999999998877655455567788889988887765 45799999999999999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 042193 338 PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLE 416 (784)
Q Consensus 338 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 416 (784)
+++++ ||...++++.|+.++|.+||+.++..... ..+.++..++..+.||+++++..+++.|...++++........
T Consensus 267 ~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~ 344 (389)
T 3vfd_A 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344 (389)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C
T ss_pred HHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999 99999999999999999999988866433 2345688999999999999999999999888776532211000
Q ss_pred cchhhHhhhhcccccchhhhhhcccCCcc
Q 042193 417 DETIDAEVLNSMAVTNEHFRTALEMSNPS 445 (784)
Q Consensus 417 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps 445 (784)
. .......++.+||..++....++
T Consensus 345 ---~--~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 345 ---M--SASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp ---C--SSSCCCCCCHHHHHHHHHHCCCS
T ss_pred ---c--chhhcCCcCHHHHHHHHHHcCCC
Confidence 0 00122356778888888776654
No 58
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=7e-28 Score=252.69 Aligned_cols=249 Identities=43% Similarity=0.695 Sum_probs=203.6
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
.++..|++|+|++++++.+++++.. +.+++.+..++...+.++||+||||||||++|+++++.++.+++.+++.++...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4567899999999999999998876 788999999999999999999999999999999999999999999999998888
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc----hHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCCC
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN----GEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPNS 335 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~~ 335 (784)
+.+.....++.+|+.+....|++|||||+|.+...+.... .....+...+|+..+++... ...+++|++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 7777777778899999888999999999999987652211 00111234456666666543 345899999999999
Q ss_pred CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhcccccc
Q 042193 336 IDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDL 415 (784)
Q Consensus 336 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 415 (784)
+++++.+++||+..++++.|+.++|.++|+.+++.+.+..+.++..++..+.||+++++..++..|+..+..+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999988887778888999999999999999999999877553211
Q ss_pred ccchhhHhhhhcccccchhhhhhcccCCcccc
Q 042193 416 EDETIDAEVLNSMAVTNEHFRTALEMSNPSAL 447 (784)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 447 (784)
...++.+++..++....++..
T Consensus 238 -----------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 -----------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp -----------CCSCCHHHHHTSCTTCCCCCC
T ss_pred -----------cCCcCHHHHHHHHHHHhhcch
Confidence 224667778888777666543
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=4.3e-26 Score=241.74 Aligned_cols=176 Identities=21% Similarity=0.326 Sum_probs=140.8
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHh----hhCCCeEEEEeccchh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 565 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l 565 (784)
+.+++.++|||||||||||++|+++|++++.+++.++++++.+.|+|+++..++.+|+.+ +...||||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567788999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHH
Q 042193 566 ATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEA 634 (784)
Q Consensus 566 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~ 634 (784)
.+.++.. ........++++.|++.||+.. ...+++||+|||+++.||++++|||||+..++ .|+.+
T Consensus 112 ~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 112 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred cCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 8865432 1112245678899999998543 45679999999999999999999999999887 46999
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHH
Q 042193 635 SRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITE 672 (784)
Q Consensus 635 ~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~ 672 (784)
+|.+|++.++... +++...+++.+.||++++|..
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999888654 456889999999999998864
No 60
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=5.1e-24 Score=234.32 Aligned_cols=389 Identities=20% Similarity=0.262 Sum_probs=191.9
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCC-CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcch
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 264 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~-~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g~ 264 (784)
.+|+|+++.++.+..++..++++++++..+... ++.++||+||||||||++|+++|+.++.+++.++++.+.+ .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 369999999999998887777776665555433 5678999999999999999999999999999999998887 58885
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEE-cCCCCCCCHHHHh
Q 042193 265 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGA-TNRPNSIDPALRR 342 (784)
Q Consensus 265 -~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~a-tn~~~~ld~al~r 342 (784)
.+..++.+|+.+... +++||++.+... ..+..+++++++|+..||++.....+ +++ ||+++.+|++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 789999999988764 358998876533 44557789999999999998776554 444 9999999999999
Q ss_pred cCCcceEEEeCCCCHH-HHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhh
Q 042193 343 FGRFDREIDIGVPDEV-GRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 421 (784)
Q Consensus 343 ~~rf~~~i~i~~p~~~-~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~ 421 (784)
++||+++|+++.|+.. .|.+|+.. .++ .++ +.++..++...
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~~--~g~--------~~~--------~~~~~~~~~~~-------------------- 207 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMAP--PGM--------EEM--------TNQLQSLFQNL-------------------- 207 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhcC--CCh--------HHH--------HHHHHHHHHhh--------------------
Confidence 9999999999999987 67777653 110 000 00000000000
Q ss_pred HhhhhcccccchhhhhhcccCCcccccccccccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEc
Q 042193 422 AEVLNSMAVTNEHFRTALEMSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYG 501 (784)
Q Consensus 422 ~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~G 501 (784)
.|.... ...++. .+.++.|.
T Consensus 208 ---------------------~~~~~~-----~~~~~v------~~a~~~l~---------------------------- 227 (444)
T 1g41_A 208 ---------------------GSDKTK-----KRKMKI------KDALKALI---------------------------- 227 (444)
T ss_dssp --------------------------------------------------CC----------------------------
T ss_pred ---------------------cCCCCc-----ceeeeH------HHHHHHHH----------------------------
Confidence 000000 000000 00000000
Q ss_pred CCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCc-h
Q 042193 502 PPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGA-A 580 (784)
Q Consensus 502 p~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~-~ 580 (784)
.+-..+. -..+...+...+.+... .++++||||.++...+.. .... .
T Consensus 228 --------------------------~~e~~~l-~~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~---~~D~s~ 275 (444)
T 1g41_A 228 --------------------------DDEAAKL-INPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEYS---GADVSR 275 (444)
T ss_dssp --------------------------GGGSCSS-CCHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCS---SSHHHH
T ss_pred --------------------------HHHHHHc-cCHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCCC---CCCchH
Confidence 0000111 12344455566666433 399999999998643211 1122 2
Q ss_pred HHHHHHHHHHhhCCC--------CCCcEEEEEec----CCCCCCCccccCCCCcccccccCCCCHHHHHHHHHH------
Q 042193 581 DRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKA------ 642 (784)
Q Consensus 581 ~~~l~~ll~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~------ 642 (784)
.-+++.||..|++.. ...++++|||. +.|..+-|.|+. ||+.+|.|+.++.++..+|+..
T Consensus 276 egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~ 353 (444)
T 1g41_A 276 EGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLT 353 (444)
T ss_dssp HHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHH
T ss_pred HHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHH
Confidence 348889999999742 34678888886 234334477876 9999999999999999999941
Q ss_pred -----HhccCCCC---CccCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 042193 643 -----CLRKSPIS---PDVDLSALAR-------YTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAME 707 (784)
Q Consensus 643 -----~~~~~~~~---~~~~~~~la~-------~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (784)
.+...+.. .+.-+..+++ +|...-.+.|+.++..++..+..+....
T Consensus 354 ~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~------------------- 414 (444)
T 1g41_A 354 EQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM------------------- 414 (444)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-------------------
T ss_pred HHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-------------------
Confidence 11111211 1122455554 3455556777777766665555443110
Q ss_pred ccCcccccHHHHHHHHhhccCCCCHHHHHHH
Q 042193 708 VDDVDEITAAHFEESMKYARRSVSDADIRKY 738 (784)
Q Consensus 708 ~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~ 738 (784)
......|+.+.+.+.+ .+.+..+++.+|
T Consensus 415 ~~~~~~i~~~~v~~~l---~~~~~~~dl~~~ 442 (444)
T 1g41_A 415 NGQTVNIDAAYVADAL---GEVVENEDLSRF 442 (444)
T ss_dssp TTCEEEECHHHHHHHH---TTTTTCHHHHHH
T ss_pred CCCeEEEeHHHHHHhc---CccccCCChhcc
Confidence 0112368999888765 456677778777
No 61
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.90 E-value=7.6e-23 Score=198.48 Aligned_cols=161 Identities=24% Similarity=0.308 Sum_probs=139.3
Q ss_pred CceEEEecccCC--CCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcC--CCCCCCeEEEcHHHHhhccccCCC
Q 042193 6 PNRLVIDEAIND--DNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGD--EQCEESKVGMNRVVRSNLRVRLGD 81 (784)
Q Consensus 6 ~~~l~v~~~~~~--~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~g~ 81 (784)
..+|+|++|.++ |+++|||||++|++|||.+||+|+|+|++ .++|.+||. ++++.+.|+||+.+|+|+|+++||
T Consensus 6 ~i~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r--~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD 83 (185)
T 1cz4_A 6 GIILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVR--KTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGD 83 (185)
T ss_dssp EEEEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSS--EEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTC
T ss_pred cEEEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCC--eEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCC
Confidence 579999999886 79999999999999999999999999976 577777874 688999999999999999999999
Q ss_pred eeeEEecCCCCCCcEEEecccc---ccccccchhhHHHHHHHhhccCCcccccCcEEEEee---cce-EEEEEEEEecCC
Q 042193 82 LVSVHACPDVKYGRRVHILPID---DTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRG---GVR-SVEFKVIETDPG 154 (784)
Q Consensus 82 ~v~v~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~---~~~-~~~f~v~~~~p~ 154 (784)
.|+|++ .+++.|++|+++|.. .+.. +.+ .+..+|+++|.+ +||.+||.|.+.. .++ .+.|+|++++|.
T Consensus 84 ~V~V~~-~~~~~A~~V~l~P~~~~~~~~~-~~~-~~~~~l~~~l~~--rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~ 158 (185)
T 1cz4_A 84 KVKVRK-VRTEIAKKVTLAPIIRKDQRLK-FGE-GIEEYVQRALIR--RPMLEQDNISVPGLTLAGQTGLLFKVVKTLPS 158 (185)
T ss_dssp EEEEEE-ECCCBCSEEEEEEECSTTCCSC-CCS-SHHHHHHHHHTT--CEECTTCEECCSSCCCSSCCCCEEEEEEESSS
T ss_pred EEEEEE-CCCCCccEEEEecccccccccc-ccc-chHHHHHHHHCC--CcccCCCEEEEeeeccCCCeEEEEEEEEEcCC
Confidence 999999 468999999999985 4432 322 346799999974 7999999999863 446 789999999999
Q ss_pred c-eEEeCCCceEEEcCCCCc
Q 042193 155 E-YCIVAPDTEIFCEGEPVK 173 (784)
Q Consensus 155 ~-~~~~~~~t~i~~~~~~~~ 173 (784)
+ +++++++|.|.+.++|..
T Consensus 159 ~~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 159 KVPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SSCEECCTTCEEEECSCCST
T ss_pred CceEEEcCCeEEEECCccch
Confidence 9 999999999999877653
No 62
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2.4e-25 Score=250.85 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=148.0
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccch
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPELL 531 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l~ 531 (784)
.+...|++++|++++++.+...+.+. ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35667999999999999888766431 12566778999999999999999999999998 899999999999
Q ss_pred hcccCcchHHHHHHHHHh---hhCCCeEEEEeccchhhhhcCCCCCCCC-C---------------chHHHHHHHHHHhh
Q 042193 532 TMWFGESEANVREIFDKA---RQSAPCVLFFDELDSIATQRGASVGDAG-G---------------AADRVLNQLLTEMD 592 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a---~~~~p~vl~iDEid~l~~~r~~~~~~~~-~---------------~~~~~l~~ll~~ld 592 (784)
++|+|+++. ++.+|+.+ +...||||||||+|.+++.|+....... . ...++.++++..|+
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999998 99999999 8888999999999999998864321100 0 01123345666665
Q ss_pred --CCCCCCcEEEEEecCCCCCCCccccCCCCccc--ccccCCCC--HHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCC
Q 042193 593 --GMNAKKTVFIIGATNRPDVIDPALLRPGRLDQ--LIYIPLPD--EASRLQIFKACLRKSPISPDVDLSALARYTHGFS 666 (784)
Q Consensus 593 --~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~--~i~~~~p~--~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s 666 (784)
+......++|++|||+++.+|+++.||||||+ .+++|.|+ .++|.+|++.+.. .+++.+++.+.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 44455567778999999999999999999998 67778884 4778888775553 268889999999
Q ss_pred HHHHHHHHHH
Q 042193 667 GADITEICQR 676 (784)
Q Consensus 667 g~di~~l~~~ 676 (784)
|+|+.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 63
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.89 E-value=1.2e-24 Score=270.68 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=115.1
Q ss_pred cCCcccccccchhhhhhhhccccccccCC----------hhhhhh------cccC----------CCce--eEEEcCCCC
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEH----------PEKFEK------FGLS----------PSKG--VLFYGPPGC 505 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~g--~ll~Gp~Gt 505 (784)
.+.+.|.+++|++++|+.+.+.+.||+.+ ++.++. .|.. +|+| +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999998844 445554 2322 4455 999999999
Q ss_pred ChhHHHHHHHHHh---CCcEEEEecccch------------hcccCc----chHHHHHHHHHhhhCCCeEEEEeccchhh
Q 042193 506 GKTLLAKAIANEC---QANFVSVKGPELL------------TMWFGE----SEANVREIFDKARQSAPCVLFFDELDSIA 566 (784)
Q Consensus 506 GKT~la~~la~~~---~~~~i~v~~~~l~------------~~~~g~----~~~~i~~~f~~a~~~~p~vl~iDEid~l~ 566 (784)
|||+||++++.+. +.+.+.|+.++.+ ++|+++ +|+.++.+|..|+...||++|+||+++|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 3455555555433 778888 89999999999999999999999999999
Q ss_pred hhc---CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 567 TQR---GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 567 ~~r---~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
+.+ +..+....+...|+++++|.+|+++....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 984 3332222367889999999999998888888888 66664
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=3.4e-22 Score=211.73 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=137.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCeEEEeehhhhh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSI 292 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l 292 (784)
+..++.++||+||||||||++|+++|++++.+++.+++.++.+.+.|..+..++.+|+.+ ....|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999988 4678999999999999
Q ss_pred cCCCCCCc--hHHHHHHHHHHHHHhhccc-----------cCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHH
Q 042193 293 APKREKTN--GEVERRIVSQLLTLMDGLK-----------SRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 359 (784)
Q Consensus 293 ~~~~~~~~--~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 359 (784)
++.+.... ....+.+...|++++|+.. ...+++||+|||+++.+|++++|++||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 98554221 1234567788999988443 44579999999999999999999999998886 579999
Q ss_pred HHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHH
Q 042193 360 RLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAA 396 (784)
Q Consensus 360 R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~ 396 (784)
|.+|++.+... .+.+...++..+.+|+++++..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999977653 3456788999999999998864
No 65
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=1.1e-20 Score=202.16 Aligned_cols=216 Identities=22% Similarity=0.286 Sum_probs=169.6
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCC---ceeEEEcCCCCChhHHHHHHHHHh-------CCcEEEEecc
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFVSVKGP 528 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~g~ll~Gp~GtGKT~la~~la~~~-------~~~~i~v~~~ 528 (784)
+.+++|++.+++.+.+.+.++. .+..+..+|+... .++||+||||||||++|+++|+.+ ..+++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4479999999999998887643 2445555565443 359999999999999999999987 3489999999
Q ss_pred cchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 529 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
++.+.|+|.....+..+|..+. +++|||||+|.+...++. ......+++.|+..|+.. ..++++|++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 9999999999999999998874 569999999999865432 234578899999999864 356788889987
Q ss_pred CC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHH-------cCCCCHHHHHHHHH
Q 042193 609 PD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARY-------THGFSGADITEICQ 675 (784)
Q Consensus 609 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~-------~~g~sg~di~~l~~ 675 (784)
++ .++|++++ ||+.+++|++|+.+++.+|++.+++..++.-+. .+..+++. ....+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 53 35899998 999999999999999999999999876544222 25556655 22335899999999
Q ss_pred HHHHHHHHHHHH
Q 042193 676 RACKYAIRENIE 687 (784)
Q Consensus 676 ~a~~~a~~~~~~ 687 (784)
.|...+..+.+.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999877766543
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=1.5e-19 Score=198.31 Aligned_cols=234 Identities=21% Similarity=0.276 Sum_probs=166.6
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecccchh
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGPELLT 532 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~~l~~ 532 (784)
|...|+++.|.+.+++.+...... +.. +..++.++||+||||||||++|+++|..++. +++.+++.++.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------IRE-GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HHT-TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------HHc-CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 455699999999998876554332 111 4445678999999999999999999999874 888888777544
Q ss_pred cccC-------------------------------------------------cchHHHHHHHHHhhh---------CCC
Q 042193 533 MWFG-------------------------------------------------ESEANVREIFDKARQ---------SAP 554 (784)
Q Consensus 533 ~~~g-------------------------------------------------~~~~~i~~~f~~a~~---------~~p 554 (784)
.+.+ +....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 3332 223445555554432 126
Q ss_pred eEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec-----------CCCCCCCccccCCCCcc
Q 042193 555 CVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT-----------NRPDVIDPALLRPGRLD 623 (784)
Q Consensus 555 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT-----------n~~~~ld~allr~gRf~ 623 (784)
+||||||+|.+. ...++.|+..++... ..+++++++ |.++.+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~--------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB--------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC--------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 799999999874 346677888777533 245555554 357889999999 997
Q ss_pred cccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 042193 624 QLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKREN 702 (784)
Q Consensus 624 ~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 702 (784)
. +.|++|+.+++.+|++..++..++. ++..+..+++.+.+.+.+++.++|+.|+..|..++
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~----------------- 314 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK----------------- 314 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------
Confidence 6 7999999999999999988765443 22347888888885699999999999998886543
Q ss_pred CccccccCcccccHHHHHHHHhhc-cCCCCHHHHHHHHH
Q 042193 703 PEAMEVDDVDEITAAHFEESMKYA-RRSVSDADIRKYQL 740 (784)
Q Consensus 703 ~~~~~~~~~~~v~~~~~~~al~~~-~~s~~~~~~~~~~~ 740 (784)
...|+.+|+++++..+ ..+.+.+.+..|++
T Consensus 315 --------~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~ 345 (368)
T 3uk6_A 315 --------GTEVQVDDIKRVYSLFLDESRSTQYMKEYQD 345 (368)
T ss_dssp --------CSSBCHHHHHHHHHHSBCHHHHHHHHC----
T ss_pred --------CCCCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 2369999999999874 33344455554443
No 67
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=8.3e-21 Score=208.78 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=82.7
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccC-CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh-cccCc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLS-PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT-MWFGE 537 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g~ 537 (784)
++|+|++++|+.|...+.++..+...+..+... +++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999998887665544444433332 4678999999999999999999999999999999999988 59995
Q ss_pred -chHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEe-cCCCCCCCcc
Q 042193 538 -SEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA-TNRPDVIDPA 615 (784)
Q Consensus 538 -~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~a-Tn~~~~ld~a 615 (784)
.++.++.+|+.+... +++||++.+... ......++++++||.+||++.....+ +++ ||+|+.||+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~------~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR------AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc------chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 799999999998775 358998876432 12345689999999999999765554 455 9999999999
Q ss_pred ccCCCCcccccccCCCCHH-HHHHHH
Q 042193 616 LLRPGRLDQLIYIPLPDEA-SRLQIF 640 (784)
Q Consensus 616 llr~gRf~~~i~~~~p~~~-~r~~il 640 (784)
|+||||||+.|++++|+.. .|.+||
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 677776
No 68
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=1.6e-19 Score=206.98 Aligned_cols=231 Identities=23% Similarity=0.322 Sum_probs=154.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccC-CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh--
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLS-PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT-- 532 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~-- 532 (784)
..-++++.|++.+++.+.+.+... .+... +...++|+||||||||++|+++|+.++.+++.++...+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 445678999999999887655432 11222 3456999999999999999999999999999998776543
Q ss_pred -------cccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC---------
Q 042193 533 -------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA--------- 596 (784)
Q Consensus 533 -------~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--------- 596 (784)
.|+|.....+...|..+....| ++||||||.+...+. ...++.||..||....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCC
Confidence 6778888888889998877766 999999999876432 1245677777775321
Q ss_pred ----CCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh-----ccCCCCC------ccCHHHHHH-
Q 042193 597 ----KKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL-----RKSPISP------DVDLSALAR- 660 (784)
Q Consensus 597 ----~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~-----~~~~~~~------~~~~~~la~- 660 (784)
..++++|+|||+++.|+|+|++ ||+ +|+|++|+.+++.+|++.++ +..++.. +..+..+++
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 1578999999999999999999 995 78999999999999999876 2233321 122455555
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc
Q 042193 661 YTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 661 ~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
++...+.++|++.+..++..+..+.+... .....|+.+++++++...+
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~-------------------~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEE-------------------RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTC-------------------CSCCEECTTTTHHHHCSCC
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcC-------------------CcceecCHHHHHHHhCCcc
Confidence 33334557777766666655544432210 1123688888888886543
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=4e-18 Score=178.70 Aligned_cols=177 Identities=23% Similarity=0.336 Sum_probs=133.1
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcc----hHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGES----EANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~----~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
+..++.++||+||||||||++|+++|...+.+++.+++++. +.|.. ...++.+|+.+....+++|||||||.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 45667789999999999999999999999999999988763 34433 357888999998888999999999999
Q ss_pred hhhcCCCCCCCCCchHHHHHHHHHHhhCCC-CCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCH-HHHHHHHHHH
Q 042193 566 ATQRGASVGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDE-ASRLQIFKAC 643 (784)
Q Consensus 566 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~-~~r~~il~~~ 643 (784)
++.+..+ ......+++.|+..+++.. ...+++||+|||.++.+|+..++ +||+..+++|+++. ++...++.
T Consensus 137 ~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~-- 209 (272)
T 1d2n_A 137 LDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALE-- 209 (272)
T ss_dssp TTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHH--
T ss_pred hccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHH--
Confidence 8765422 2345677888888888764 34578899999999999884333 39999999887765 44444443
Q ss_pred hccCCCCCccCHHHHHHHcCCC----CHHHHHHHHHHHH
Q 042193 644 LRKSPISPDVDLSALARYTHGF----SGADITEICQRAC 678 (784)
Q Consensus 644 ~~~~~~~~~~~~~~la~~~~g~----sg~di~~l~~~a~ 678 (784)
+...+ .+.++..+++.+.|+ +.+++.++++.|.
T Consensus 210 -~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 210 -LLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp -HHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred -hcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 33333 345688899999887 5666666666554
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=3.1e-18 Score=182.88 Aligned_cols=245 Identities=19% Similarity=0.276 Sum_probs=165.8
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhc-ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh-cccCc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKF-GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT-MWFGE 537 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g~ 537 (784)
+++.|++.+++.+...+..+.........+ .-..+.+++|+||||||||++|++++..++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 457889999888887765432211111111 1134567999999999999999999999999999999998875 56664
Q ss_pred c-hHHHHHHHHHhh-----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------CCCcEEEE
Q 042193 538 S-EANVREIFDKAR-----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------AKKTVFII 603 (784)
Q Consensus 538 ~-~~~i~~~f~~a~-----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~v~vi 603 (784)
. ...++.+|..+. ...++|+||||+|.+...+... ........+++.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 455667666431 1235799999999997654321 011112335788999998642 23467888
Q ss_pred Ee----cCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH-----------hccCCC---CCccCHHHHHHHc---
Q 042193 604 GA----TNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC-----------LRKSPI---SPDVDLSALARYT--- 662 (784)
Q Consensus 604 ~a----Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~-----------~~~~~~---~~~~~~~~la~~~--- 662 (784)
++ ++.+..+++++++ ||+..++|++|+.+++.+|++.. ++..+. -++..++.|++.+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 5678889999998 99988999999999999999831 111221 1223366777765
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc
Q 042193 663 ----HGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 663 ----~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
.+.+.+++.++++.+...+..+.... ......|+.+|++++++...
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~-------------------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDM-------------------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGC-------------------TTCEEEECHHHHHHHTCSSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccc-------------------cCCEEEEeeHHHHHHHHhhh
Confidence 24678899999988776554322100 01122599999999998763
No 71
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=4.1e-17 Score=176.62 Aligned_cols=194 Identities=20% Similarity=0.289 Sum_probs=148.1
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 535 (784)
..+|+++.|.+.+++.+...+..... .-.+..++||+||||||||++|++++..++.+|+.++++.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 34789999999999998877653211 123456799999999999999999999999999999987652
Q ss_pred CcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCC----------------CCc
Q 042193 536 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNA----------------KKT 599 (784)
Q Consensus 536 g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~----------------~~~ 599 (784)
....+..++.. ...++++|||||+.+. ...++.|+..|+...- ..+
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC--------------HHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 23344444543 2356899999999864 3456777777775421 124
Q ss_pred EEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 600 VFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 600 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
+++|++||++..+++++++ ||+.++.+++|+.+++..+++..++..++. .+..+..+++.+.| +.+++.++++.+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 8999999999999999998 999999999999999999999998876643 22336677775555 6788888888877
Q ss_pred HHHH
Q 042193 679 KYAI 682 (784)
Q Consensus 679 ~~a~ 682 (784)
..|.
T Consensus 232 ~~a~ 235 (338)
T 3pfi_A 232 DFAD 235 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 72
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=3.1e-17 Score=175.17 Aligned_cols=211 Identities=17% Similarity=0.232 Sum_probs=158.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEechhh
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGTGKTLIARAVANETG-------AFFFLINGPEI 257 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtla~~la~~l~-------~~~~~v~~~~l 257 (784)
+|+|+++.++.+.+++.... .+..++.+|+.. +.++||+||||||||++|+++++.++ .+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999888744 356666666544 34699999999999999999999873 37899999999
Q ss_pred hhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC---
Q 042193 258 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN--- 334 (784)
Q Consensus 258 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~--- 334 (784)
.+.+.|.....+..+|..+ .+++|||||+|.++..++. ......+...|+..++.. ..++++|+++|.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHH
Confidence 9888898888888888876 4579999999999866532 123356677888888754 34677788887543
Q ss_pred --CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhc------C-CCcHHHHHHHHHHHHHH
Q 042193 335 --SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDT------H-GYVGADLAALCTEAALQ 404 (784)
Q Consensus 335 --~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t------~-g~~~~dl~~l~~~a~~~ 404 (784)
.++|++++ ||+..++++.|+.+++.+|++.++...... .+..+..++... . .-.++++..++..+...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 24688888 899999999999999999999887754432 222344555442 2 23467888888888765
Q ss_pred HHHh
Q 042193 405 CIRE 408 (784)
Q Consensus 405 ~~~~ 408 (784)
+..+
T Consensus 262 ~~~r 265 (309)
T 3syl_A 262 QANR 265 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=4.5e-18 Score=186.07 Aligned_cols=222 Identities=20% Similarity=0.304 Sum_probs=151.8
Q ss_pred ccchhhhhhhhccccccccCChhhh-hhccc-CCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc-ccCcc
Q 042193 462 IGGLETVKRELQETVQYPVEHPEKF-EKFGL-SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM-WFGES 538 (784)
Q Consensus 462 i~g~~~~k~~l~~~i~~~~~~~~~~-~~~~~-~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~-~~g~~ 538 (784)
+.|++.+++.+...+.......... ..... .++.++||+||||||||++|+++|..++.+|+.+++.++... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6888999988887764221111000 00011 245679999999999999999999999999999999988744 77876
Q ss_pred -hHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC------------------
Q 042193 539 -EANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN------------------ 595 (784)
Q Consensus 539 -~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------------------ 595 (784)
...+..+|+.+ ....++||||||||.+...|............++++.||+.|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56778888776 3445789999999999887654322222223458999999999531
Q ss_pred -CCCcEEEEEecCCC----------CC-----------------------------------CCccccCCCCcccccccC
Q 042193 596 -AKKTVFIIGATNRP----------DV-----------------------------------IDPALLRPGRLDQLIYIP 629 (784)
Q Consensus 596 -~~~~v~vi~aTn~~----------~~-----------------------------------ld~allr~gRf~~~i~~~ 629 (784)
...++++|+++|.. .. +.|+|+. ||+.++.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 11233444444431 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------ccCCCC---CccCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHH
Q 042193 630 LPDEASRLQIFKA----CL-------RKSPIS---PDVDLSALAR--YTHGFSGADITEICQRACKYAIREN 685 (784)
Q Consensus 630 ~p~~~~r~~il~~----~~-------~~~~~~---~~~~~~~la~--~~~g~sg~di~~l~~~a~~~a~~~~ 685 (784)
+|+.+++.+|+.. ++ ...+.. .+.-++.|++ +...+..++|++++..+...++.+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999986 22 111221 1222566765 4456677999999999888776543
No 74
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.72 E-value=2.7e-17 Score=158.60 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=125.0
Q ss_pred ceEEEecccCCCCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEc--CC--CCCCCeEEEcHHHHhhccccCCCe
Q 042193 7 NRLVIDEAINDDNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLG--DE--QCEESKVGMNRVVRSNLRVRLGDL 82 (784)
Q Consensus 7 ~~l~v~~~~~~~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~--~~--~~~~~~i~~~~~~~~~~~~~~g~~ 82 (784)
..+.|.=..- .+++|+|+++.|..|++.+||+|+|+|+++ +++.+|+ .+ +++.+.|.||+.+|+|+|+++||.
T Consensus 13 ~~~~v~~~~~-~~~~vrL~~~~~~~L~~~~gd~VeI~g~~~--t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~ 89 (179)
T 1wlf_A 13 AVVTVAFTNA-RDCFLHLPRRLVAQLHLLQNQAIEVASDHQ--PTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQ 89 (179)
T ss_dssp EEEEEEEECC-SSSCEEECHHHHHHTTCCTTCCEEEESSSC--CEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCE
T ss_pred EEEEEEEECC-CCcEEECCHHHHHHcCCCCCcEEEEEeCCe--eEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCE
Confidence 4455542222 688999999999999999999999999774 4445554 34 578899999999999999999999
Q ss_pred eeEEecCCCCCCcEEEecccccc-ccccchhhHHHHHHHhhccCCcccccCcEEEEeecc-eEEEEEEEEecC-CceEEe
Q 042193 83 VSVHACPDVKYGRRVHILPIDDT-IEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGV-RSVEFKVIETDP-GEYCIV 159 (784)
Q Consensus 83 v~v~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~p-~~~~~~ 159 (784)
|+|+++.+++.|++|+++|.+.. +. +. +....+|+.+|..+.|+|.+||.|.+...+ ..+.|+|+++.| .+++.+
T Consensus 90 V~V~~~~~~~~A~~V~laP~~~dD~e-i~-e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~I 167 (179)
T 1wlf_A 90 VFLRPCSHVVSCQQVEVEPLSADDWE-IL-ELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRL 167 (179)
T ss_dssp EEEEECSCCEECSEEEEEESSHHHHH-HH-HHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEEC
T ss_pred EEEEECCCCccceEEEEEcCCcCCeE-Ee-hhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEE
Confidence 99999888999999999998531 21 11 222457888888888999999999986433 678999999999 889999
Q ss_pred CCCceEEEc
Q 042193 160 APDTEIFCE 168 (784)
Q Consensus 160 ~~~t~i~~~ 168 (784)
+++|+|.+.
T Consensus 168 t~~TeI~v~ 176 (179)
T 1wlf_A 168 ETNTKLLIQ 176 (179)
T ss_dssp CTTCEEEEC
T ss_pred CCCcEEEEe
Confidence 999999874
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=1.5e-16 Score=171.05 Aligned_cols=193 Identities=23% Similarity=0.344 Sum_probs=142.2
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccC
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFG 536 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 536 (784)
.+|+++.|.+.+++.+...+.... . .-..+.+++|+||||||||++|++++..++.+++.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 468889999998888877654311 1 1124567999999999999999999999999999998876521
Q ss_pred cchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----------------CCCcE
Q 042193 537 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----------------AKKTV 600 (784)
Q Consensus 537 ~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----------------~~~~v 600 (784)
...+...|..+ ...++++|||||+.+.. ..++.|+..++... ...++
T Consensus 77 --~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 --PGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp --HHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred --hHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 22333333321 14567999999998643 23455666665421 11357
Q ss_pred EEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 042193 601 FIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEICQRACK 679 (784)
Q Consensus 601 ~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~ 679 (784)
.+|++||.++.+++++.+ ||+.++.+++|+.+++.++++..+...++.- +..+..+++.+.| +.+++.++++.+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 899999999999999998 9998999999999999999999887665432 2347788888866 56788888887765
Q ss_pred HH
Q 042193 680 YA 681 (784)
Q Consensus 680 ~a 681 (784)
.|
T Consensus 217 ~a 218 (324)
T 1hqc_A 217 FA 218 (324)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 76
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=7.7e-17 Score=180.15 Aligned_cols=193 Identities=16% Similarity=0.236 Sum_probs=141.7
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 568 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~ 568 (784)
+.+++|+||||||||+||+++++.+ +.+++.+++.++...+.+.........|.......+++|||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5679999999999999999999987 78899999988765554333222223344444436789999999998642
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHH
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDV---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~ 643 (784)
......|+..++.+......+||++++.|.. +++++++ ||. .++.+++|+.++|.+|++..
T Consensus 210 ------------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 ------------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp ------------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1234556666555444556777777776665 7899988 886 88999999999999999998
Q ss_pred hccCC--CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHH
Q 042193 644 LRKSP--ISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEE 721 (784)
Q Consensus 644 ~~~~~--~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 721 (784)
++..+ +++++ +..++..+.| +.+++.+++..+...|...+ ..|+.+++++
T Consensus 276 ~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~--------------------------~~It~~~~~~ 327 (440)
T 2z4s_A 276 LEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYKETTG--------------------------KEVDLKEAIL 327 (440)
T ss_dssp HHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS--------------------------SCCCHHHHHH
T ss_pred HHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC--------------------------CCCCHHHHHH
Confidence 87544 33333 7788888875 88999999998887664321 2488888888
Q ss_pred HHhhccC
Q 042193 722 SMKYARR 728 (784)
Q Consensus 722 al~~~~~ 728 (784)
+++...+
T Consensus 328 ~l~~~~~ 334 (440)
T 2z4s_A 328 LLKDFIK 334 (440)
T ss_dssp HTSTTTC
T ss_pred HHHHHhh
Confidence 8887653
No 77
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.67 E-value=1.5e-15 Score=167.12 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=160.0
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---------CCcEEEEecccc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFVSVKGPEL 530 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~i~v~~~~l 530 (784)
+++.|.+...+.+...+.... ....+.+++|+||||||||++++++++.+ +..++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 667888888777776654211 11345679999999999999999999987 788999987653
Q ss_pred hhc----------------ccCcchHH-HHHHHHHhhhC-CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhh
Q 042193 531 LTM----------------WFGESEAN-VREIFDKARQS-APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMD 592 (784)
Q Consensus 531 ~~~----------------~~g~~~~~-i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 592 (784)
.+. +.|.+... ...+++..... .|++|||||+|.+...+ ....++..++..++
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQ 160 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchh
Confidence 221 11222222 44555554433 47899999999987531 13456777777666
Q ss_pred CCCCCCcEEEEEecCCC---CCCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcc----CCCCCccCHHHHHHHcC-
Q 042193 593 GMNAKKTVFIIGATNRP---DVIDPALLRPGRLDQ-LIYIPLPDEASRLQIFKACLRK----SPISPDVDLSALARYTH- 663 (784)
Q Consensus 593 ~~~~~~~v~vi~aTn~~---~~ld~allr~gRf~~-~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~la~~~~- 663 (784)
......++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++..++. ..++ +..+..+++.+.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAAR 237 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHH
Confidence 54324578899999988 678999988 8875 8999999999999999988764 2233 233677887776
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccC--------CCCHH
Q 042193 664 --GFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR--------SVSDA 733 (784)
Q Consensus 664 --g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~--------s~~~~ 733 (784)
| ..+.+.++|+.|+..|..++ ...|+.+|+..++..... +.+..
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~~~~-------------------------~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~ 291 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAERRR-------------------------EERVRREHVYSARAEIERDRVSEVVRTLPLH 291 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHTT-------------------------CSCBCHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred hcc-CHHHHHHHHHHHHHHHHHcC-------------------------CCCcCHHHHHHHHHHHhhchHHHHHHcCCHH
Confidence 5 55677888888876664321 135778888877766532 34555
Q ss_pred HHHHHHHHHH
Q 042193 734 DIRKYQLFAQ 743 (784)
Q Consensus 734 ~~~~~~~~~~ 743 (784)
+...+.....
T Consensus 292 ~~~~l~a~~~ 301 (387)
T 2v1u_A 292 AKLVLLSIMM 301 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 78
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.66 E-value=2.3e-16 Score=175.97 Aligned_cols=208 Identities=21% Similarity=0.323 Sum_probs=144.2
Q ss_pred cccccccchhhhh---hhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhc
Q 042193 457 VSWEDIGGLETVK---RELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTM 533 (784)
Q Consensus 457 ~~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~ 533 (784)
.+|+++.|++.++ +.|...+.. + ...+++|+||||||||++|+++++.++.+|+.+++..
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 4678899998887 445444432 1 1257999999999999999999999999999988653
Q ss_pred ccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec--C
Q 042193 534 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--N 607 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT--n 607 (784)
.....++.+|..+. ...+++|||||||.+... .++.||..|+. ..+++|++| |
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSC
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCCC
Confidence 23445666666654 345789999999987432 23557777774 345666666 4
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-------CCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 042193 608 RPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PIS-PDVDLSALARYTHGFSGADITEICQRACK 679 (784)
Q Consensus 608 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~ 679 (784)
....+++++++ |+. ++.|++|+.+++..+++..++.. .+. ++..+..|++.+.| +.+++.+++..|+.
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 44689999998 886 77899999999999999988752 111 22337788888766 66788888887775
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccCC
Q 042193 680 YAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARRS 729 (784)
Q Consensus 680 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 729 (784)
.+..+. .....||.+++.+++......
T Consensus 221 ~a~~~~-----------------------~~~~~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 221 MAEVDD-----------------------SGKRVLKPELLTEIAGERSAR 247 (447)
T ss_dssp HSCBCT-----------------------TSCEECCHHHHHHHHTCCCCC
T ss_pred hccccc-----------------------CCCCccCHHHHHHHHhhhhhc
Confidence 542100 011358888888888765443
No 79
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=5.9e-16 Score=166.48 Aligned_cols=170 Identities=17% Similarity=0.248 Sum_probs=124.7
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 569 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r 569 (784)
...+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|..... .+++|||||++.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~- 113 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK- 113 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC-
Confidence 34679999999999999999999988 889999999888766554443332233433333 3679999999998642
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC---CCCccccCCCCcc--cccccCCCCHHHHHHHHHHHh
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---VIDPALLRPGRLD--QLIYIPLPDEASRLQIFKACL 644 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~~ 644 (784)
......++..++........+|+++++.|. .+++++.+ ||. .++.+++ +.+++.+|++..+
T Consensus 114 -----------~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 114 -----------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHH
Confidence 123344555554433344578888888876 67899998 886 6789999 9999999999998
Q ss_pred ccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 042193 645 RKSPISP-DVDLSALARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 645 ~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~ 680 (784)
+..++.- +..+..+++.+ .+.+++.+++..++..
T Consensus 180 ~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 180 KEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 7655432 23377888888 4778888888877755
No 80
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.66 E-value=3.4e-16 Score=195.37 Aligned_cols=149 Identities=17% Similarity=0.259 Sum_probs=109.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCC----------hhhhhh------hC------------CCCCceEEEECCCCCcH
Q 042193 183 EVGYDDVGGVRKQMAQIRELVELPLRH----------PQLFKS------IG------------VKPPKGILLYGPPGTGK 234 (784)
Q Consensus 183 ~~~~~~i~G~~~~~~~l~~~~~~~~~~----------~~~~~~------l~------------i~~~~~vLL~GppGtGK 234 (784)
.++|++++|+++.++.+.+.+.+|+.+ ++.++. .| ++.++.+||||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 367999999999999999999988844 445554 22 34555699999999999
Q ss_pred HHHHHHHHHHh---CCcEEEEechh----hh--------hhhcch----hHHHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 235 TLIARAVANET---GAFFFLINGPE----IM--------SKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 235 Ttla~~la~~l---~~~~~~v~~~~----l~--------~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
|+||++++.+. +.+.++|+..+ +. +++.++ .+..++.+|..++...|+++|+|++++|++.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999998765 44555665544 33 456666 8999999999999999999999999999998
Q ss_pred CC---CC---chHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 296 RE---KT---NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 296 ~~---~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
+. .. ......|+++|++..+++.....+|+|| +||+
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 32 11 1256678899999999998888888888 5664
No 81
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.65 E-value=3.2e-16 Score=172.18 Aligned_cols=245 Identities=17% Similarity=0.203 Sum_probs=150.8
Q ss_pred ccccchhhhhhhhccccccccCChhhhh-----------------hcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcE
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFE-----------------KFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANF 522 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~-----------------~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 522 (784)
+.+.|++.+++.|...+..+........ .-...++.++||+||||||||++|+++|..++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3578999999999877643221111000 00123456799999999999999999999999999
Q ss_pred EEEecccch-hcccCcc-hHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-
Q 042193 523 VSVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN- 595 (784)
Q Consensus 523 i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~- 595 (784)
+.+++..+. ..|+|.. +..+..+|..+. ...++|+||||+|.+...|+............+++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 4566654 455666666542 235689999999999876543221112223458899999999641
Q ss_pred ------------------CCCcEEEEEecCCC-----------------------------------------CCCCccc
Q 042193 596 ------------------AKKTVFIIGATNRP-----------------------------------------DVIDPAL 616 (784)
Q Consensus 596 ------------------~~~~v~vi~aTn~~-----------------------------------------~~ld~al 616 (784)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456777777721 1245666
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHH----H-------hccCC--CC-CccCHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q 042193 617 LRPGRLDQLIYIPLPDEASRLQIFKA----C-------LRKSP--IS-PDVDLSALARYTH--GFSGADITEICQRACKY 680 (784)
Q Consensus 617 lr~gRf~~~i~~~~p~~~~r~~il~~----~-------~~~~~--~~-~~~~~~~la~~~~--g~sg~di~~l~~~a~~~ 680 (784)
++ ||+.++.|++++.++...|+.. + +...+ +. ++.-+..|++... ....+++.+++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 66 8988999999999999998862 1 11111 11 1222666776643 35788999999998887
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhh
Q 042193 681 AIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKY 725 (784)
Q Consensus 681 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~ 725 (784)
++.+..... .....|+.+++.++.+.
T Consensus 339 ~~~~~~~~~-------------------~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 339 IMFDLPKLK-------------------GSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHTGGGGT-------------------TSEEEECHHHHTTSSCC
T ss_pred HHhhccCCC-------------------CCEEEEeHHHhcCCCCc
Confidence 776542110 01235888888776544
No 82
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=5.5e-16 Score=177.65 Aligned_cols=165 Identities=24% Similarity=0.381 Sum_probs=116.3
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh------
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------ 259 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~------ 259 (784)
.+++.|+++.+..+.+.+.+.... +.+ ++..++|+|||||||||+++++++.++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 467999999999887766542211 112 5778999999999999999999999999999988765432
Q ss_pred ---hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccC-------------Cc
Q 042193 260 ---KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSR-------------AH 323 (784)
Q Consensus 260 ---~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~-------------~~ 323 (784)
.+.|.....+...|..+....| ++|+||+|.+.+.... ...+.|+..++..... .+
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 3455555666677777655555 9999999999876421 1334566666543211 46
Q ss_pred EEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 324 VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 324 vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
+++|+|||+++.+++++++ ||. .|.++.|+.+++.+|++.++
T Consensus 225 v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred eEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 8999999999999999998 895 68999999999999998765
No 83
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.63 E-value=2e-15 Score=158.03 Aligned_cols=195 Identities=19% Similarity=0.283 Sum_probs=132.0
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh-hcch
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 264 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~-~~g~ 264 (784)
...+.|..+.++.+......- ...+...+..++.++||+||||||||++|+++++.++.+++.+++++.... ..+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 345677777776665532110 112233344667889999999999999999999999999999988753221 1223
Q ss_pred hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCcEEEEEEcCCCCCCCH-HHHh
Q 042193 265 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS-RAHVVVMGATNRPNSIDP-ALRR 342 (784)
Q Consensus 265 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~atn~~~~ld~-al~r 342 (784)
....++.+|+.+....+++|||||+|.++..+.... .....+...|...++.... ...+++|++||.++.+++ .++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~- 186 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML- 186 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-
Confidence 345678889888878889999999999976654221 2334566777777776543 347889999999887766 344
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCC
Q 042193 343 FGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGY 389 (784)
Q Consensus 343 ~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~ 389 (784)
+||...+.++.+.. |.++.........+ .+..+..++..+.||
T Consensus 187 -~rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 187 -NAFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp -TTSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTS
T ss_pred -cccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCC
Confidence 48988877765554 44444433332233 345688888888887
No 84
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.63 E-value=5.7e-15 Score=157.40 Aligned_cols=215 Identities=21% Similarity=0.336 Sum_probs=144.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcch
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 264 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~-i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~-~~~g~ 264 (784)
+++.|++++++.+...+..++.++.+...+. -..+.++||+||||||||++|+++++.++.+++.+++.++.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999887765433322211110 134678999999999999999999999999999999988765 34443
Q ss_pred -hHHHHHHHHHHH-----HhcCCeEEEeehhhhhcCCCCCCc-hHHHHHHHHHHHHHhhccc--------cCCcEEEEEE
Q 042193 265 -SESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTN-GEVERRIVSQLLTLMDGLK--------SRAHVVVMGA 329 (784)
Q Consensus 265 -~~~~l~~vf~~a-----~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~--------~~~~vivI~a 329 (784)
....++.++..+ ....++++||||+|.+.+...... ......+.+.|+..+++.. ....+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234455555432 112357999999999987764332 2233445677888887542 2246777777
Q ss_pred ----cCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHH-------------cCCCc-ccchhhhHHHHhcC----
Q 042193 330 ----TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHT-------------KNMKL-AEDVDLERVARDTH---- 387 (784)
Q Consensus 330 ----tn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~-------------~~~~~-~~~~~l~~la~~t~---- 387 (784)
++.+..+++++.+ ||+..+.++.|+.+++.+|++... .+..+ .++..++.++..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4577789999997 999889999999999999998311 11111 12233555665542
Q ss_pred ---CCcHHHHHHHHHHHHH
Q 042193 388 ---GYVGADLAALCTEAAL 403 (784)
Q Consensus 388 ---g~~~~dl~~l~~~a~~ 403 (784)
+...+.+..++..+..
T Consensus 253 ~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMD 271 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSH
T ss_pred cccccCcHHHHHHHHHHHH
Confidence 3456667666666543
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.62 E-value=2.6e-15 Score=163.08 Aligned_cols=216 Identities=19% Similarity=0.226 Sum_probs=136.0
Q ss_pred cCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC-------c-----
Q 042193 454 VPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA-------N----- 521 (784)
Q Consensus 454 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------~----- 521 (784)
.+...|+++.|.+.+++.+...... ....++||+||||||||++|++++..++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567899999999887765433221 12345999999999999999999998863 1
Q ss_pred ---------------------EEEEecccchhcccCcchHHHHHHHHHhh---------hCCCeEEEEeccchhhhhcCC
Q 042193 522 ---------------------FVSVKGPELLTMWFGESEANVREIFDKAR---------QSAPCVLFFDELDSIATQRGA 571 (784)
Q Consensus 522 ---------------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~---------~~~p~vl~iDEid~l~~~r~~ 571 (784)
++.+.........+|.. .+...|.... ...++++|||||+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 11111100000111110 0111222221 11257999999998643
Q ss_pred CCCCCCCchHHHHHHHHHHhhCC----CC-------CCcEEEEEecCCCC-CCCccccCCCCcccccccCCC-CHHHHHH
Q 042193 572 SVGDAGGAADRVLNQLLTEMDGM----NA-------KKTVFIIGATNRPD-VIDPALLRPGRLDQLIYIPLP-DEASRLQ 638 (784)
Q Consensus 572 ~~~~~~~~~~~~l~~ll~~ld~~----~~-------~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p-~~~~r~~ 638 (784)
..++.|+..|+.. .. ..++++|+|||..+ .+++++++ ||+..+.+++| +.+++.+
T Consensus 159 ----------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~ 226 (350)
T 1g8p_A 159 ----------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 226 (350)
T ss_dssp ----------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred ----------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 3556777766641 11 13689999999754 89999999 99988999998 6778878
Q ss_pred HHHHHh-------------------------------ccCCCCCccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHH
Q 042193 639 IFKACL-------------------------------RKSPISPDVDLSALARYTHG---FSGADITEICQRACKYAIRE 684 (784)
Q Consensus 639 il~~~~-------------------------------~~~~~~~~~~~~~la~~~~g---~sg~di~~l~~~a~~~a~~~ 684 (784)
|++..+ +...+++ ..+..+++...+ .+.+.+.++++.|...|..+
T Consensus 227 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 227 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 886631 1112322 224555555432 25688888888887776543
Q ss_pred HHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhc
Q 042193 685 NIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYA 726 (784)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 726 (784)
+ ...|+.+|+.+|+..+
T Consensus 306 ~-------------------------~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 306 G-------------------------ATAVGRDHLKRVATMA 322 (350)
T ss_dssp T-------------------------CSBCCHHHHHHHHHHH
T ss_pred C-------------------------CCcCCHHHHHHHHHHH
Confidence 2 2358999999998865
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=4.1e-15 Score=178.30 Aligned_cols=242 Identities=20% Similarity=0.231 Sum_probs=164.1
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVK 526 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~ 526 (784)
-.|+++.|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3577888888777776654431 245679999999999999999999986 56677777
Q ss_pred cccch--hcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 527 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 527 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
...+. .+|.|+.++.++.+|+.+....+++|||||+|.+.+.++.. .....+ .+.+..+.....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~----~~~L~~~l~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDA----ANLIKPLLSSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHH----HHHHSSCSSSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHH----HHHHHHHHhCCCeEEEE
Confidence 77766 46889999999999999988888999999999998754321 112223 33444444556788999
Q ss_pred ecCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----CCC-CccCHHHHHHHcCC-----CCHHH
Q 042193 605 ATNRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PIS-PDVDLSALARYTHG-----FSGAD 669 (784)
Q Consensus 605 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~~g-----~sg~d 669 (784)
+||.++ .+|+++.| ||+ .+.|+.|+.+++.+||+.+.+.+ .+. .+..+..++..+.+ +....
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998753 57899998 998 79999999999999999877542 221 12235556655433 44556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccC----CCCHHHHHHHHHHHHH
Q 042193 670 ITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR----SVSDADIRKYQLFAQT 744 (784)
Q Consensus 670 i~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~----s~~~~~~~~~~~~~~~ 744 (784)
+..++.+|+..+.... .......|+.+|+.+++..... .++.++...+..+.+.
T Consensus 398 ~i~lld~a~~~~~~~~---------------------~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~ 455 (758)
T 1r6b_X 398 AIDVIDEAGARARLMP---------------------VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDR 455 (758)
T ss_dssp HHHHHHHHHHHHHHSS---------------------SCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---------------------ccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHH
Confidence 7777777764332100 0001235888999988877532 4444444444444433
No 87
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=2.7e-14 Score=154.05 Aligned_cols=230 Identities=21% Similarity=0.303 Sum_probs=157.4
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCc
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGE 537 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~ 537 (784)
++++..|.+.+++.+...+.... . .-.++..++|+||||+|||||++++|++++.++...+++.+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~-------~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------ 88 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK-------M-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------ 88 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH-------H-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------
T ss_pred cHHHccCcHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------
Confidence 46667777777777665543210 0 112346699999999999999999999999888877776442
Q ss_pred chHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC----------------CCCcEE
Q 042193 538 SEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN----------------AKKTVF 601 (784)
Q Consensus 538 ~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----------------~~~~v~ 601 (784)
....+..++... ...+|+|+||++.+... +.+.|+..++... ....+.
T Consensus 89 ~~~~l~~~~~~~--~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 89 KQGDMAAILTSL--ERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp SHHHHHHHHHHC--CTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCCCC---------------CCCE
T ss_pred CHHHHHHHHHHc--cCCCEEEEcchhhcCHH--------------HHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 123344444432 24579999999987531 2233333343221 012467
Q ss_pred EEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 042193 602 IIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 602 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~sg~di~~l~~~a~~~ 680 (784)
++++|+++..|++++++ ||...+.+++|+.+++.+|++...+..++.-+ ..+..+++.+.| +.+.+.++++.+...
T Consensus 153 li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 78899999999999998 99888999999999999999988876554422 237788888877 567888888888777
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhccC---CCCHHHHHHHHHHHHHH
Q 042193 681 AIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYARR---SVSDADIRKYQLFAQTL 745 (784)
Q Consensus 681 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~---s~~~~~~~~~~~~~~~~ 745 (784)
|..++ ...|+.++++++++.+.. .++..+....+.+.+.|
T Consensus 230 a~~~~-------------------------~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (334)
T 1in4_A 230 LTVVK-------------------------ADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIY 272 (334)
T ss_dssp HHHHT-------------------------CSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred HHHcC-------------------------CCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHh
Confidence 65432 125888888888887642 34455555556666665
No 88
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.61 E-value=3.2e-14 Score=153.81 Aligned_cols=195 Identities=19% Similarity=0.272 Sum_probs=141.6
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
.+.+.+|+++.|.+..++.+..++...... -.+..++||+||||||||++|+++++.++.+++.+++..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 456668999999999999998887653211 13456899999999999999999999999999999987652
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc----------------CCc
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS----------------RAH 323 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~ 323 (784)
....+...+.. ...++++||||++.+.+ .....|+..++...- ..+
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 12233333332 24578999999998852 234455666654320 124
Q ss_pred EEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHH
Q 042193 324 VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAA 402 (784)
Q Consensus 324 vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 402 (784)
+.+|++||....+++++++ ||+..+.++.|+.+++..+++.++...... .+..+..++..+.|.. ..+..++..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP-RIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH-HHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 7899999999999999988 898999999999999999999887655432 2334677777666654 55666666554
Q ss_pred HH
Q 042193 403 LQ 404 (784)
Q Consensus 403 ~~ 404 (784)
..
T Consensus 232 ~~ 233 (338)
T 3pfi_A 232 DF 233 (338)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.60 E-value=1.6e-14 Score=157.97 Aligned_cols=200 Identities=24% Similarity=0.305 Sum_probs=138.6
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhhc
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLA 262 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~~~l~~~~~ 262 (784)
.|+++.|.+..++.+..+...- . -+..++.++||+||||||||++|+++++.++. +++.+++..+...+.
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred chhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 4899999999988766555331 1 13345679999999999999999999999975 677888766433221
Q ss_pred -------------------------------------------------chhHHHHHHHHHHHHh-----c----CCeEE
Q 042193 263 -------------------------------------------------GESESNLRKAFEEAEK-----N----APSII 284 (784)
Q Consensus 263 -------------------------------------------------g~~~~~l~~vf~~a~~-----~----~p~il 284 (784)
++....++..+..+.. . .|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 1122344445544332 1 26799
Q ss_pred EeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc-----------CCCCCCCHHHHhcCCcceEEEeC
Q 042193 285 FIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT-----------NRPNSIDPALRRFGRFDREIDIG 353 (784)
Q Consensus 285 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at-----------n~~~~ld~al~r~~rf~~~i~i~ 353 (784)
||||+|.+.+ ...+.|+..++... ..++++++. |.+..+++++++ ||.. +.++
T Consensus 194 ~IDEi~~l~~-----------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 194 FIDEVHMLDI-----------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEESGGGSBH-----------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEhhccccCh-----------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 9999998842 34456666665432 245555554 347789999988 8866 8999
Q ss_pred CCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 354 VPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 354 ~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
+|+.+++.++++..+..... .++..+..++..+.+...+++..++..+...+..+
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999977654332 23334788888888567788889999887766543
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.60 E-value=4.4e-15 Score=151.91 Aligned_cols=181 Identities=12% Similarity=0.157 Sum_probs=127.3
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 569 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r 569 (784)
...+++|+||||||||+++++++..+. .+++.++..++...+.. .++.. ..+.++||||++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~vliiDe~~~~~~~- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEGL--EQFDLICIDDVDAVAGH- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTTG--GGSSEEEEETGGGGTTC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHhc--cCCCEEEEeccccccCC-
Confidence 346799999999999999999999764 77888888877544321 11111 33579999999987532
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhCCCCCCcE-EEEEecCCCC---CCCccccCCCCcc--cccccCCCCHHHHHHHHHHH
Q 042193 570 GASVGDAGGAADRVLNQLLTEMDGMNAKKTV-FIIGATNRPD---VIDPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 570 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v-~vi~aTn~~~---~ld~allr~gRf~--~~i~~~~p~~~~r~~il~~~ 643 (784)
....+.|+..++.......+ +|+++++.++ .+++++.+ ||. .++.+++|+.+++.++++..
T Consensus 120 -----------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 120 -----------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHH
Confidence 11233444444433223333 6666665554 45678887 776 89999999999999999998
Q ss_pred hccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHH
Q 042193 644 LRKSPISP-DVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEES 722 (784)
Q Consensus 644 ~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 722 (784)
++..++.- +..++.+++.+.| +.+++.++++.+...|..+. ..|+.++++++
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~--------------------------~~It~~~v~~~ 239 (242)
T 3bos_A 187 AAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ--------------------------RKLTIPFVKEM 239 (242)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT--------------------------CCCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC--------------------------CCCcHHHHHHH
Confidence 87655432 2336778887765 78899999998887764432 25999999988
Q ss_pred Hh
Q 042193 723 MK 724 (784)
Q Consensus 723 l~ 724 (784)
++
T Consensus 240 l~ 241 (242)
T 3bos_A 240 LR 241 (242)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.7e-15 Score=156.75 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=128.7
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEecccchhc----------c------cCcchHHHHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKGPELLTM----------W------FGESEANVREI 545 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~~~l~~~----------~------~g~~~~~i~~~ 545 (784)
..+.+++|+||||||||+++++++.++ ...++.++|..+.+. . .+.+...+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456779999999999999999999987 356888998765432 1 23456678888
Q ss_pred HHHh--hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC----CccccCC
Q 042193 546 FDKA--RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI----DPALLRP 619 (784)
Q Consensus 546 f~~a--~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l----d~allr~ 619 (784)
|+.. ....++|+||||+|.+.. .+++..|+.... ....+++||+++|..+.. ++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhhc-------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 9875 456688999999999861 346666766543 245679999999998764 555665
Q ss_pred CCcc-cccccCCCCHHHHHHHHHHHhccCCC------------------------------------CCccCHHHHHHH-
Q 042193 620 GRLD-QLIYIPLPDEASRLQIFKACLRKSPI------------------------------------SPDVDLSALARY- 661 (784)
Q Consensus 620 gRf~-~~i~~~~p~~~~r~~il~~~~~~~~~------------------------------------~~~~~~~~la~~- 661 (784)
||. .+|.|++|+.++..+|++..++...- -.+.-++.+|+.
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v 265 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV 265 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 886 68999999999999999988865311 012225666663
Q ss_pred --cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 662 --THGFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 662 --~~g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
..| ..+-.-++|+.|+..|-++.+..
T Consensus 266 A~~~G-D~R~Al~ilr~A~~~ae~e~~~k 293 (318)
T 3te6_A 266 ANVSG-STEKAFKICEAAVEISKKDFVRK 293 (318)
T ss_dssp HHHHC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCC-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 23344458899998888776543
No 92
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=2.5e-15 Score=171.60 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=130.4
Q ss_pred CCcccccccchhhhhhhhcccccc-ccCChhhhhhccc---CCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQY-PVEHPEKFEKFGL---SPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~-~~~~~~~~~~~~~---~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
...+|+++.|.+.+++.|.+.+.. ....+..+...|. .+++++||+||||||||++|+++|++++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 345789999999999998887653 1111222333333 256789999999999999999999999999999999887
Q ss_pred hhcccCcch-------HHHHHHHHHh-----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCC
Q 042193 531 LTMWFGESE-------ANVREIFDKA-----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKK 598 (784)
Q Consensus 531 ~~~~~g~~~-------~~i~~~f~~a-----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 598 (784)
.+.+..... ..+..+|..+ ....++||||||+|.+.... ...++.|+..++. ...
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK--TST 180 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH--CSS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh--cCC
Confidence 554321110 0122334333 23567899999999986521 1124555555553 233
Q ss_pred cEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC--CCCCccCHHHHHHHcCCCCHHHHHHHHHH
Q 042193 599 TVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--PISPDVDLSALARYTHGFSGADITEICQR 676 (784)
Q Consensus 599 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~g~sg~di~~l~~~ 676 (784)
.+++++++.....+.+ +. |+...+.|++|+.+++.+++...+... .++++ .+..+++.+.| +++.+++.
T Consensus 181 ~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G----diR~~i~~ 251 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG----DIRQVINL 251 (516)
T ss_dssp CEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT----CHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHHH
Confidence 4566655544444543 43 445689999999999999998877543 34433 37888888765 44444443
Q ss_pred H
Q 042193 677 A 677 (784)
Q Consensus 677 a 677 (784)
.
T Consensus 252 L 252 (516)
T 1sxj_A 252 L 252 (516)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=1.5e-15 Score=162.16 Aligned_cols=209 Identities=21% Similarity=0.320 Sum_probs=143.3
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc---
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM--- 533 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~--- 533 (784)
.++.|.+.+++.+...+...... +.. .-.+...++|+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 45667777777777665432100 000 11233469999999999999999999987 457999988766321
Q ss_pred --ccCcchH-----HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CC
Q 042193 534 --WFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AK 597 (784)
Q Consensus 534 --~~g~~~~-----~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~ 597 (784)
++|.... ....+.........+++||||+|.+. ..+++.|+..|+... ..
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1211100 00223333344556899999999863 357788888887532 11
Q ss_pred CcEEEEEecCC--------------------------CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----
Q 042193 598 KTVFIIGATNR--------------------------PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS---- 647 (784)
Q Consensus 598 ~~v~vi~aTn~--------------------------~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~---- 647 (784)
.++++|+|||. .+.+++++++ ||+.++.|++|+.+++..|++.+++..
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999998 4467889987 999999999999999999999877542
Q ss_pred ---CCC---CccCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 042193 648 ---PIS---PDVDLSALARYTH--GFSGADITEICQRACKYAIRENIEK 688 (784)
Q Consensus 648 ---~~~---~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~ 688 (784)
+.. .+..+..|++... ..+.++|.++++.+...++.+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 111 2223667777665 5788999999999998888776543
No 94
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.6e-14 Score=158.99 Aligned_cols=193 Identities=23% Similarity=0.279 Sum_probs=133.6
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-----------CCcEEEEecc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-----------QANFVSVKGP 528 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----------~~~~i~v~~~ 528 (784)
+++.|.+...+.+...+..... -..+.+++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6677888877777765542111 1334579999999999999999999987 8899999876
Q ss_pred cch-h----------c-------ccCcc-hHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHH-HHHHH
Q 042193 529 ELL-T----------M-------WFGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRV-LNQLL 588 (784)
Q Consensus 529 ~l~-~----------~-------~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~-l~~ll 588 (784)
+.. + . +.+.+ ...+..+++......+ +|||||+|.+...+ ...+ +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 542 1 1 11222 2335555555554444 99999999987531 1123 44444
Q ss_pred HHhhCCCCCCcEEEEEecCCC---CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc----CCCCCccCHHHHHHH
Q 042193 589 TEMDGMNAKKTVFIIGATNRP---DVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK----SPISPDVDLSALARY 661 (784)
Q Consensus 589 ~~ld~~~~~~~v~vi~aTn~~---~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~la~~ 661 (784)
... .++.+|++||.+ +.+++++.+ ||...+.|++|+.++..+|++..++. ..++ +..+..+++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 332 678899999987 678999988 88889999999999999999998763 2233 2336778887
Q ss_pred cCCC--CHHHHHHHHHHHHHHH
Q 042193 662 THGF--SGADITEICQRACKYA 681 (784)
Q Consensus 662 ~~g~--sg~di~~l~~~a~~~a 681 (784)
+.+. +.+.+.++|+.|...|
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHh
Confidence 7622 4456667888777655
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.58 E-value=2.4e-15 Score=189.31 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=102.7
Q ss_pred hhcccCCcccccccccccCCcccccccchhhhhhhh-----------------ccccccccCChhhhhhc---ccCCCce
Q 042193 437 TALEMSNPSALRETVVEVPNVSWEDIGGLETVKREL-----------------QETVQYPVEHPEKFEKF---GLSPSKG 496 (784)
Q Consensus 437 ~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l-----------------~~~i~~~~~~~~~~~~~---~~~~~~g 496 (784)
.++....|+.+++...+.|+++|++...+..+.+.+ .+...++...+++.+-+ |+.+...
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~l 734 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 734 (2050)
T ss_dssp CCC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSE
T ss_pred hhcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcE
Confidence 567777899999999999999997633333332222 22334455555555555 4777777
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc----cC--------cchHHHHHHHHHhhh----CCCeEE
Q 042193 497 VLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW----FG--------ESEANVREIFDKARQ----SAPCVL 557 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~----~g--------~~~~~i~~~f~~a~~----~~p~vl 557 (784)
++|+|+||+|||+||..+|..+ +.+++++++++....+ +| .++..+..++..++. ..|+++
T Consensus 735 ilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LV 814 (2050)
T 3cmu_A 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 814 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEE
Confidence 9999999999999999999876 3569999887765443 22 223345666666654 678999
Q ss_pred EEeccchhhh-hc--CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 558 FFDELDSIAT-QR--GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 558 ~iDEid~l~~-~r--~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
|||.++.+.. .+ +....-.++...|.+++++..|+.+....++.||++....
T Consensus 815 IIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 815 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp EESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred EEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 9999999875 22 1111111134467788999999887766677777766543
No 96
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.58 E-value=3.2e-14 Score=143.23 Aligned_cols=201 Identities=19% Similarity=0.220 Sum_probs=141.1
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEeccc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPE 529 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~ 529 (784)
+...|+++.|.+..++.+.+.+... ...+++|+||||||||+++++++..+ ...++.+++.+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 3456788889888888887765421 12349999999999999999999975 35677777654
Q ss_pred chhcccCcchHHHHHHHHHhh------hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 530 LLTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a~------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
... ...+...+.... ...+++|||||+|.+.. ..++.|+..++.. ..++.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHhc--CCCCeEE
Confidence 321 122222222221 24678999999998743 2345566666653 3467788
Q ss_pred EecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 042193 604 GATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRACKYAI 682 (784)
Q Consensus 604 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 682 (784)
++||.++.+++++.+ ||. .+.+++|+.++..++++..++..+.. ++..+..+++.+.| +.+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 899999999999998 887 89999999999999999888654433 22346778877766 5556666666554332
Q ss_pred HHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHh
Q 042193 683 RENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMK 724 (784)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~ 724 (784)
..|+.+|+++++.
T Consensus 212 -----------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----------------------------EVVDADTIYQITA 224 (226)
T ss_dssp -----------------------------SCBCHHHHHHHHH
T ss_pred -----------------------------ceecHHHHHHHhc
Confidence 1589999999875
No 97
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.58 E-value=3.4e-14 Score=155.19 Aligned_cols=219 Identities=21% Similarity=0.309 Sum_probs=145.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhh-hhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh-hcch
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFK-SIGV-KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 264 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~-~l~i-~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~-~~g~ 264 (784)
.|.|++..++.+...+...+....... .... .++.++||+||||||||++|+++|+.++.+++.+++.++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 379999999999887753222111000 0011 256789999999999999999999999999999999988743 6665
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-----------------
Q 042193 265 S-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTN---GEVERRIVSQLLTLMDGLK----------------- 319 (784)
Q Consensus 265 ~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~----------------- 319 (784)
. ...+..+|..+ ....+++|||||+|.+.+.+.... ......+.+.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 45566777665 334578999999999998765432 2233458888999998421
Q ss_pred --cCCcEEEEEEcCCC----------CC-----------------------------------CCHHHHhcCCcceEEEe
Q 042193 320 --SRAHVVVMGATNRP----------NS-----------------------------------IDPALRRFGRFDREIDI 352 (784)
Q Consensus 320 --~~~~vivI~atn~~----------~~-----------------------------------ld~al~r~~rf~~~i~i 352 (784)
...++++|++++.. .. +.|++.. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11233444444421 11 5677765 99999999
Q ss_pred CCCCHHHHHHHHHH----HH-------c--CCCc-ccchhhhHHHH--hcCCCcHHHHHHHHHHHHHHHHHh
Q 042193 353 GVPDEVGRLEVFRI----HT-------K--NMKL-AEDVDLERVAR--DTHGYVGADLAALCTEAALQCIRE 408 (784)
Q Consensus 353 ~~p~~~~R~~il~~----~~-------~--~~~~-~~~~~l~~la~--~t~g~~~~dl~~l~~~a~~~~~~~ 408 (784)
.+|+.+++.+|+.. .. . +..+ ..+..++.++. ....+..+.+..++..+....+.+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999998875 11 1 1111 12223556664 334556678888888887766544
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=5.9e-15 Score=159.10 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=106.1
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecc------cchhc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGP------ELLTM 533 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~------~l~~~ 533 (784)
.++.|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++. ++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred cceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 5677777777766554331 24799999999999999999999999999888763 12211
Q ss_pred ccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCC---------CCCCcEEEEE
Q 042193 534 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGM---------NAKKTVFIIG 604 (784)
Q Consensus 534 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~---------~~~~~v~vi~ 604 (784)
........ ...|. ......+++||||++.+. ...++.|+..|+.. ....+++||+
T Consensus 92 ~~~~~~~~-~~~~~-~g~l~~~vl~iDEi~~~~--------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 92 MIYNQHKG-NFEVK-KGPVFSNFILADEVNRSP--------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEETTTT-EEEEE-ECTTCSSEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred eeecCCCC-ceEec-cCcccccEEEEEccccCC--------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 11000000 00000 000013699999999853 34567777777642 1234678888
Q ss_pred ecCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC
Q 042193 605 ATNRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 647 (784)
Q Consensus 605 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 647 (784)
|+|..+ .+++++++ ||+..+.+++|+.+++.+|++..+...
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 888554 38999999 999899999999999999999887653
No 99
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=1.4e-14 Score=155.63 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=130.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWF 535 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 535 (784)
..+|+++.|.+.+++.|...+.. -..+..+|++||||||||++++++|+.++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 34688999999999888877652 13345688899999999999999999999999999987632
Q ss_pred CcchHHHHHHHHHhhhC-----CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC
Q 042193 536 GESEANVREIFDKARQS-----APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 610 (784)
Q Consensus 536 g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~ 610 (784)
...++..+...... .++++||||+|.+.+ ....+.|+..++... .++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 34455444443222 568999999998852 224566666666432 4567888999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHh-------ccCCCCC-c-cCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 611 VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL-------RKSPISP-D-VDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 611 ~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~-------~~~~~~~-~-~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
.+++++.+ ||. ++.|++|+.++|.+|++..+ +..++.- + ..+..+++.+.|.- +++.+.++.++
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGELDSYS 220 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHHHHHHG
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHHHHHHh
Confidence 99999998 885 79999999998776655433 2223321 2 34777888776633 34444444443
No 100
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.57 E-value=2.8e-15 Score=147.33 Aligned_cols=158 Identities=21% Similarity=0.363 Sum_probs=113.3
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVK 526 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~ 526 (784)
..|+++.|.++..+.+.+.+.. ..+.+++|+||||||||+++++++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3567777887777766655431 235679999999999999999999986 67888888
Q ss_pred cccch--hcccCcchHHHHHHHHHhh-hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 527 GPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 527 ~~~l~--~~~~g~~~~~i~~~f~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
..++. ..+.+.....+..+++... ...++++||||+|.+...+... ........+ ...++ ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l---~~~~~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNML---KPALA----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHH---HHHHH----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHH---HHhhc----cCCeEEE
Confidence 87776 3455666777888887664 3557899999999997654221 011222233 33333 2356788
Q ss_pred EecCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHH
Q 042193 604 GATNRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIF 640 (784)
Q Consensus 604 ~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il 640 (784)
++||.++ .+|+++.+ ||+ .+++++|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888876 78999998 998 6999999999998876
No 101
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.57 E-value=9.4e-15 Score=164.66 Aligned_cols=184 Identities=22% Similarity=0.329 Sum_probs=127.8
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVK 526 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~ 526 (784)
-.++++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4577888988888877665432 234579999999999999999999986 67788888
Q ss_pred cccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec
Q 042193 527 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 606 (784)
Q Consensus 527 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT 606 (784)
+. ..|.|+.+..++.+|..+....++|+||| +. ....+.|+..| ....+.+|++|
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~------------~~a~~~L~~~L----~~g~v~vI~at 298 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA------------IDASNILKPSL----ARGELQCIGAT 298 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC------C--------------------CCCT----TSSSCEEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc------------hhHHHHHHHhh----cCCCEEEEecC
Confidence 77 77889999999999999998889999999 10 11223333333 34578999999
Q ss_pred CCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----CCC-CccCHHHHHHHcCCCC-----HHHHH
Q 042193 607 NRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PIS-PDVDLSALARYTHGFS-----GADIT 671 (784)
Q Consensus 607 n~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~~g~s-----g~di~ 671 (784)
|.++ .+|+++.| ||. .|.|++|+.+++..|++.++..+ ++. .+..+..++..+.+|. .....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9997 68999999 998 59999999999999999888663 222 2223566666654443 34666
Q ss_pred HHHHHHHHHH
Q 042193 672 EICQRACKYA 681 (784)
Q Consensus 672 ~l~~~a~~~a 681 (784)
.++.+|+..+
T Consensus 376 ~ll~~a~~~~ 385 (468)
T 3pxg_A 376 DLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777543
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=4e-14 Score=144.48 Aligned_cols=184 Identities=22% Similarity=0.320 Sum_probs=132.1
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc---------------
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 521 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~--------------- 521 (784)
..|+++.|.+..++.|...+.. + ..+..++|+||+|+|||++++++++.....
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 3567788888888888766542 1 223469999999999999999999886432
Q ss_pred ---------EEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 522 ---------FVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 522 ---------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
++.+.... ......++.+++... ...+.+|||||+|.+. ...++.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~l~ 147 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 147 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHHHH
Confidence 12222111 112334556666543 2347899999999863 33567778
Q ss_pred HHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCH
Q 042193 589 TEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSG 667 (784)
Q Consensus 589 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg 667 (784)
..++.. ..++.+|++||.++.+++++.+ |+ ..+.+++|+.++..++++..+...+.. ++..+..+++.+.| +.
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 888754 3468888899999999999987 75 689999999999999999888765433 22347788898877 77
Q ss_pred HHHHHHHHHHH
Q 042193 668 ADITEICQRAC 678 (784)
Q Consensus 668 ~di~~l~~~a~ 678 (784)
+.+.++++.|.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888764
No 103
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.56 E-value=1.2e-14 Score=142.87 Aligned_cols=161 Identities=22% Similarity=0.379 Sum_probs=116.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+..++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++++++.+ +..++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 4455788999999998888876543 235689999999999999999999986 67788
Q ss_pred EEechhhh--hhhcchhHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 251 LINGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 251 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
.+++.++. ..+.+.....+..+++.... ..+.+++|||++.+.+....... ..+...+...++ ..++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~----~~~~~~i 155 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA----RGELHCV 155 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH----TTSCCEE
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc----cCCeEEE
Confidence 88888776 34455666777788876644 45789999999999765422111 111223333332 3466778
Q ss_pred EEcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 042193 328 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVF 364 (784)
Q Consensus 328 ~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il 364 (784)
++++.+. .+++++.+ ||. .+.++.|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888765 68999998 887 5899999999998775
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.56 E-value=1.1e-13 Score=180.29 Aligned_cols=327 Identities=17% Similarity=0.207 Sum_probs=175.1
Q ss_pred CCceEEEECCCCCcHHHHHH-HHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHH---------------hcCCeE
Q 042193 220 PPKGILLYGPPGTGKTLIAR-AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE---------------KNAPSI 283 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~-~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~---------------~~~p~i 283 (784)
.++++||+||||||||++|+ .+++..+..++.++.+...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 36799999999999999995 45544456677777654432 223444444321 123479
Q ss_pred EEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc--------CCcEEEEEEcCCCC-----CCCHHHHhcCCcceEE
Q 042193 284 IFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS--------RAHVVVMGATNRPN-----SIDPALRRFGRFDREI 350 (784)
Q Consensus 284 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--------~~~vivI~atn~~~-----~ld~al~r~~rf~~~i 350 (784)
+||||++....++.... ....++.+++.. +++-. -.++.+|||||+|. .+++++.| || ..+
T Consensus 1340 lFiDEinmp~~d~yg~q--~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ--NVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCC--HHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred EEecccccccccccCch--hHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 99999997554432222 223344444432 12111 13589999999994 89999998 78 679
Q ss_pred EeCCCCHHHHHHHHHHHHcCC-Ccccchh--h-----------hHHH-------HhcCCCcHHHHHHHHHHHHHHHHHhh
Q 042193 351 DIGVPDEVGRLEVFRIHTKNM-KLAEDVD--L-----------ERVA-------RDTHGYVGADLAALCTEAALQCIREK 409 (784)
Q Consensus 351 ~i~~p~~~~R~~il~~~~~~~-~~~~~~~--l-----------~~la-------~~t~g~~~~dl~~l~~~a~~~~~~~~ 409 (784)
.++.|+.+.+..|+..++... ....++. . ..+. +...-|+.+|+..+++..........
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~ 1493 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGP 1493 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhh
Confidence 999999999999998776432 1111110 0 0111 11235678888777765433211000
Q ss_pred ccc-cccccchhhHhh---hhcccccchhh-----------hhhcccCCccc--ccc-cccccCCcccccccchhhhhhh
Q 042193 410 MDV-IDLEDETIDAEV---LNSMAVTNEHF-----------RTALEMSNPSA--LRE-TVVEVPNVSWEDIGGLETVKRE 471 (784)
Q Consensus 410 ~~~-~~~~~~~~~~~~---~~~~~v~~~d~-----------~~al~~~~ps~--~~~-~~~~~~~~~~~~i~g~~~~k~~ 471 (784)
... ..+- .-+..+. .....+..+|. .+......... .+. .....-+..|.++.. +++++.
T Consensus 1494 ~~~~~~l~-rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~-~~l~~~ 1571 (2695)
T 4akg_A 1494 RQTLRSLI-RLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNK-TDLVNF 1571 (2695)
T ss_dssp CCCHHHHH-HHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCH-HHHHHH
T ss_pred hccHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecCH-HHHHHH
Confidence 000 0000 0000000 00000111110 00000000000 000 000111123444432 444444
Q ss_pred hcccccc---------------ccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccC
Q 042193 472 LQETVQY---------------PVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFG 536 (784)
Q Consensus 472 l~~~i~~---------------~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 536 (784)
+.+.+.. .+.|.-.+.++-..|..++||+|++||||++|++..|..++..++.+....-.+ ..
T Consensus 1572 l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~ 1649 (2695)
T 4akg_A 1572 IEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LS 1649 (2695)
T ss_dssp HHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HH
T ss_pred HHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HH
Confidence 4433321 112222333434466667999999999999999999999999999887554321 12
Q ss_pred cchHHHHHHHHHhhh-CCCeEEEEecc
Q 042193 537 ESEANVREIFDKARQ-SAPCVLFFDEL 562 (784)
Q Consensus 537 ~~~~~i~~~f~~a~~-~~p~vl~iDEi 562 (784)
+-...++.++..|.. ..|.+++|+|-
T Consensus 1650 ~f~eDLk~l~~~aG~~~~~~vFL~tD~ 1676 (2695)
T 4akg_A 1650 DFDMILKKAISDCSLKESRTCLIIDES 1676 (2695)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecc
Confidence 345678899999854 45677778775
No 105
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=7.2e-14 Score=153.42 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=137.5
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh------CCcEEEEecccchh
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFVSVKGPELLT 532 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~------~~~~i~v~~~~l~~ 532 (784)
.+++.|.+...+.|.+.+..... -..+..++|+||||||||++++++++.+ +.+++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 36678888877777766542111 1334569999999999999999999987 88899998654321
Q ss_pred ------c----------ccCcch-HHHHHHHHHhhhCC-CeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCC
Q 042193 533 ------M----------WFGESE-ANVREIFDKARQSA-PCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGM 594 (784)
Q Consensus 533 ------~----------~~g~~~-~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 594 (784)
. ..+.+. .....+++...... |++|||||++.+..... ..++..++..++..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEV 159 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhc
Confidence 1 112222 22444555544443 89999999999875321 23677788888765
Q ss_pred CCCCcEEEEEecCCC---CCCCccccCCCCcc-cccccCCCCHHHHHHHHHHHhcc----CCCCCccCHHHHHHHcC---
Q 042193 595 NAKKTVFIIGATNRP---DVIDPALLRPGRLD-QLIYIPLPDEASRLQIFKACLRK----SPISPDVDLSALARYTH--- 663 (784)
Q Consensus 595 ~~~~~v~vi~aTn~~---~~ld~allr~gRf~-~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~la~~~~--- 663 (784)
...++.+|++||.+ +.+++.+.+ ||. ..+.+++|+.++..+|++..++. ..+. +..+..+++.+.
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAREH 235 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHHTT
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhc
Confidence 34578888899877 467888887 775 48999999999999999987653 2222 223566777665
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 042193 664 GFSGADITEICQRACKYAIR 683 (784)
Q Consensus 664 g~sg~di~~l~~~a~~~a~~ 683 (784)
| +.+.+.++|+.|+..|..
T Consensus 236 G-~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAER 254 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHh
Confidence 5 556777788888776653
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=4.1e-13 Score=144.19 Aligned_cols=192 Identities=17% Similarity=0.292 Sum_probs=127.7
Q ss_pred CCccccc-C--hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 042193 184 VGYDDVG-G--VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 257 (784)
Q Consensus 184 ~~~~~i~-G--~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l 257 (784)
.+|+++. | .......++.++..+- ..+.+++|+|||||||||+++++++.+ +..++++++.++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4566664 3 4444555555554321 235689999999999999999999998 888999999887
Q ss_pred hhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC---
Q 042193 258 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN--- 334 (784)
Q Consensus 258 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~--- 334 (784)
...+.+.........|..... .+++|||||++.+..+. .....++..++........+++++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 665544333222223333332 37899999999986431 12233444554444445567777777766
Q ss_pred CCCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHcCC--CcccchhhhHHHHhcCCCcHHHHHHHHHHHH
Q 042193 335 SIDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTKNM--KLAEDVDLERVARDTHGYVGADLAALCTEAA 402 (784)
Q Consensus 335 ~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~--~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 402 (784)
.+++.+.+ ||. ..+++++ +.+++.+|++.++... .+.+ ..+..++..+ | ..+++..++..+.
T Consensus 147 ~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~-~~l~~l~~~~-g-~~r~l~~~l~~~~ 212 (324)
T 1l8q_A 147 GVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRK-EVIDYLLENT-K-NVREIEGKIKLIK 212 (324)
T ss_dssp TSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHC-S-SHHHHHHHHHHHH
T ss_pred HhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhC-C-CHHHHHHHHHHHH
Confidence 67899987 775 6688999 9999999999877643 3333 3377888888 4 4455655555544
No 107
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=3e-14 Score=172.46 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=130.4
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSV 525 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v 525 (784)
.-.++++.|.+...+.+.+.+.. ....+++|+||||||||++++++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 34577788887776666554421 234579999999999999999999987 7889999
Q ss_pred ecccch--hcccCcchHHHHHHHHHhhhC-CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEE
Q 042193 526 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFI 602 (784)
Q Consensus 526 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 602 (784)
+++.+. ..|.|+.+..++.+|+.+... .|+||||||+|.+.+.+... ....+.+.|...++. ..+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~------g~~~~~~~L~~~l~~----~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE------GAVDAGNMLKPALAR----GELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHHT----TCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc------chHHHHHHHHHHHhC----CCeEE
Confidence 998886 578899999999999999875 68999999999998654321 112233444444442 45778
Q ss_pred EEecCCCC----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----CCC-CccCHHHHHHHc-----CCCCHH
Q 042193 603 IGATNRPD----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PIS-PDVDLSALARYT-----HGFSGA 668 (784)
Q Consensus 603 i~aTn~~~----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~-----~g~sg~ 668 (784)
|++||.++ .+|+++.| ||+. |.|++|+.+++.+||+.+++.. ++. .+..+..+++.+ +.|...
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99998775 58999999 9985 9999999999999998776532 221 122255555543 456666
Q ss_pred HHHHHHHHHHHHHH
Q 042193 669 DITEICQRACKYAI 682 (784)
Q Consensus 669 di~~l~~~a~~~a~ 682 (784)
....++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765443
No 108
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.52 E-value=2.2e-14 Score=161.35 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=107.3
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhC--CcEEEEec-----ccchhcccCcchHHHHHHHHHhhhC---CCeEEEEeccch
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQ--ANFVSVKG-----PELLTMWFGESEANVREIFDKARQS---APCVLFFDELDS 564 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~-----~~l~~~~~g~~~~~i~~~f~~a~~~---~p~vl~iDEid~ 564 (784)
.++||+||||||||++|+++|..++ .+|..+.+ +++++.+.+......+ .|..+... .++|+|||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g-~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEG-RYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhch-hHHhhhccCCCcceeeeHHhHhh
Confidence 4799999999999999999999884 34544443 3333333222211112 23222222 467999999976
Q ss_pred hhhhcCCCCCCCCCchHHHHHHHHHHhhCCC--------CCCcEEEEEecCCCCC---CCccccCCCCcccccccCCCCH
Q 042193 565 IATQRGASVGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATNRPDV---IDPALLRPGRLDQLIYIPLPDE 633 (784)
Q Consensus 565 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------~~~~v~vi~aTn~~~~---ld~allr~gRf~~~i~~~~p~~ 633 (784)
+ ...+++.|+..|+... .....++|+|||.+.. +.+++++ ||...+++|+|+.
T Consensus 121 ~--------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~ 184 (500)
T 3nbx_X 121 A--------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQD 184 (500)
T ss_dssp C--------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCC
T ss_pred h--------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhh
Confidence 3 2567788898887421 1122356777775322 3469998 9999999999986
Q ss_pred -HHHHHHHHHHhccC-------------------------CCCCccCHHHHHHHc---------CCCCHHHHHHHHHHHH
Q 042193 634 -ASRLQIFKACLRKS-------------------------PISPDVDLSALARYT---------HGFSGADITEICQRAC 678 (784)
Q Consensus 634 -~~r~~il~~~~~~~-------------------------~~~~~~~~~~la~~~---------~g~sg~di~~l~~~a~ 678 (784)
+++..|++...... .+++++ ++.+++.. .|.|.+.+..+++.|.
T Consensus 185 ~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~ 263 (500)
T 3nbx_X 185 KANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQ 263 (500)
T ss_dssp HHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHH
Confidence 77889987654311 111111 33344332 4788888888888877
Q ss_pred HHHHHHH
Q 042193 679 KYAIREN 685 (784)
Q Consensus 679 ~~a~~~~ 685 (784)
..|..++
T Consensus 264 A~A~l~g 270 (500)
T 3nbx_X 264 ASAFFSG 270 (500)
T ss_dssp HHHHHTT
T ss_pred HHHhhcC
Confidence 7666543
No 109
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.52 E-value=1.6e-13 Score=147.36 Aligned_cols=193 Identities=22% Similarity=0.339 Sum_probs=136.2
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
.+.+.+|+++.|.+..++.+.+++..... . -..+.++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 45566789999999999998887754210 0 124568999999999999999999999999999998876522
Q ss_pred hhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCc
Q 042193 260 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK----------------SRAH 323 (784)
Q Consensus 260 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 323 (784)
...+...|... ...++++||||++.+.. .....|+..++... ....
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 12222233221 14578999999998752 12344555554322 1135
Q ss_pred EEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHH
Q 042193 324 VVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEA 401 (784)
Q Consensus 324 vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 401 (784)
+.+|++||.+..+++++.+ ||...+.++.|+.+++.++++.++...... ++..+..++..+.|+. ..+..++..+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 7899999999999998876 898889999999999999999887654332 2334677888877764 4555555444
No 110
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=1.9e-14 Score=172.38 Aligned_cols=184 Identities=23% Similarity=0.332 Sum_probs=128.3
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVK 526 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~ 526 (784)
-.++++.|.+..++.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 4577889998888877665432 334579999999999999999999996 67787777
Q ss_pred cccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec
Q 042193 527 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 606 (784)
Q Consensus 527 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT 606 (784)
. ..+|.|+.+..++.+|+.+....++||||| .. ....+.|+..| ....+.+|+||
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l----~~~~v~~I~at 298 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSL----ARGELQCIGAT 298 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCT----TSSSCEEEEEC
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHH----hcCCEEEEeCC
Confidence 6 567889999999999999999999999999 10 11223333333 35678999999
Q ss_pred CCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC----CC-CccCHHHHHHHc-----CCCCHHHHH
Q 042193 607 NRPD-----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP----IS-PDVDLSALARYT-----HGFSGADIT 671 (784)
Q Consensus 607 n~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~la~~~-----~g~sg~di~ 671 (784)
|..+ .+|+++.| ||. .|.|+.|+.+++.+||+.+++.+. +. .+..+..+++.+ +++.+....
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9998 79999999 994 699999999999999998876632 22 112244555443 455666667
Q ss_pred HHHHHHHHHH
Q 042193 672 EICQRACKYA 681 (784)
Q Consensus 672 ~l~~~a~~~a 681 (784)
.++.+|+..+
T Consensus 376 ~ll~~a~~~~ 385 (758)
T 3pxi_A 376 DLIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 111
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.51 E-value=8.1e-14 Score=157.02 Aligned_cols=186 Identities=25% Similarity=0.364 Sum_probs=130.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEE
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFF 250 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~ 250 (784)
..+-.++++.|.++.++.+.+++.. ....++||+||||||||++|+++|+.+ +..++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4455688999999999998887754 234589999999999999999999997 66778
Q ss_pred EEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc
Q 042193 251 LINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT 330 (784)
Q Consensus 251 ~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at 330 (784)
.+++. ..+.|+.+..++.+|..+....+.++||| +.. ...+.|+. ...+..+.+|++|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~~------~a~~~L~~----~L~~g~v~vI~at 298 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------AAI------DASNILKP----SLARGELQCIGAT 298 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC---------C--------------CC----CTTSSSCEEEEEC
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------Cch------hHHHHHHH----hhcCCCEEEEecC
Confidence 88776 66778888889999999998889999999 000 11122322 2345678999999
Q ss_pred CCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-----ccchhhhHHHHhcCCCcH-----HHHH
Q 042193 331 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-----AEDVDLERVARDTHGYVG-----ADLA 395 (784)
Q Consensus 331 n~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-----~~~~~l~~la~~t~g~~~-----~dl~ 395 (784)
|.++ .+++++++ ||.. +.++.|+.+++.+||+.+...+.. ..+..+..++..+.+|.. ....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9887 68999999 9975 999999999999999977655321 123346666666665543 3566
Q ss_pred HHHHHHHHH
Q 042193 396 ALCTEAALQ 404 (784)
Q Consensus 396 ~l~~~a~~~ 404 (784)
.++.+++..
T Consensus 376 ~ll~~a~~~ 384 (468)
T 3pxg_A 376 DLIDEAGSK 384 (468)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=2.9e-13 Score=148.93 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=136.2
Q ss_pred cccccchhhhhhhhccccccccCChhhhhhcccCCCc--eeEEEcCCCCChhHHHHHHHHHh----CCcEEEEecccchh
Q 042193 459 WEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSK--GVLFYGPPGCGKTLLAKAIANEC----QANFVSVKGPELLT 532 (784)
Q Consensus 459 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~----~~~~i~v~~~~l~~ 532 (784)
.+++.|.+...+.+...+..... + ..+. .++|+||||||||++++++++.+ +..++.+++....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 36678888777777665542110 1 2223 79999999999999999999988 56788888655321
Q ss_pred c---------c-------cCcchHH-HHHHHHHhh-hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCC
Q 042193 533 M---------W-------FGESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGM 594 (784)
Q Consensus 533 ~---------~-------~g~~~~~-i~~~f~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 594 (784)
. . .+..... ...+..... ...|.+|||||++.+. ...+..|+..++..
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQEA 152 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHhC
Confidence 0 0 1111111 222222222 2458899999999861 34677777777654
Q ss_pred CC--CCcEEEEEecCCC---CCCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcc---CCCCCccCHHHHHHHcC--
Q 042193 595 NA--KKTVFIIGATNRP---DVIDPALLRPGRLDQ-LIYIPLPDEASRLQIFKACLRK---SPISPDVDLSALARYTH-- 663 (784)
Q Consensus 595 ~~--~~~v~vi~aTn~~---~~ld~allr~gRf~~-~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~~-- 663 (784)
.. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. .....+..+..+++.+.
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred CCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 32 1478888999988 678888877 8875 8999999999999999988764 11223334778888883
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHH
Q 042193 664 ------GFSGADITEICQRACKYAIRE 684 (784)
Q Consensus 664 ------g~sg~di~~l~~~a~~~a~~~ 684 (784)
+-..+.+.++|+.|+..|..+
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 225677888999888777543
No 113
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.50 E-value=2.1e-13 Score=171.88 Aligned_cols=118 Identities=20% Similarity=0.270 Sum_probs=86.4
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccch----hccc------------CcchHHHHHHHHHhh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELL----TMWF------------GESEANVREIFDKAR 550 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~----~~~~------------g~~~~~i~~~f~~a~ 550 (784)
|+.+.++++|+||||||||+||.+++.+. +.....++..+.+ .... ...++.++.+++.++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 57888899999999999999999998875 3455555544331 1112 245678888999999
Q ss_pred hCCCeEEEEeccchhhhhc---CCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 551 QSAPCVLFFDELDSIATQR---GASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 551 ~~~p~vl~iDEid~l~~~r---~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
...|++|||||++.+.+.+ +....+..+...|+++++|.+|.+.....+++||.+..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 9999999999999888753 32211112225789999999999887777887776543
No 114
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.6e-13 Score=147.41 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=130.4
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC------CcEEEEecc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFVSVKGP 528 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------~~~i~v~~~ 528 (784)
....|+++.|.+++++.+...+... ...+++|+||||||||++++++++.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3456889999999988887765431 123499999999999999999999853 457777776
Q ss_pred cchhcccCcchHHHHHHHHHhh----------------hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhh
Q 042193 529 ELLTMWFGESEANVREIFDKAR----------------QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMD 592 (784)
Q Consensus 529 ~l~~~~~g~~~~~i~~~f~~a~----------------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 592 (784)
+... ...++..+.... ...+.++||||+|.+.. ...+.|+..|+
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~le 158 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRTME 158 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHHHH
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHHHH
Confidence 5311 111222111111 12457999999998743 24466777777
Q ss_pred CCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHH
Q 042193 593 GMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADIT 671 (784)
Q Consensus 593 ~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~ 671 (784)
.... +..+|.+||.++.+++++.+ |+. .+.|++|+.++...+++..++..++. ++..+..+++.+.| +.+.+.
T Consensus 159 ~~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~ 232 (353)
T 1sxj_D 159 TYSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGI 232 (353)
T ss_dssp HTTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHH
T ss_pred hcCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5433 45566678899999999998 886 88999999999999999888665543 23347788888876 455666
Q ss_pred HHHHHHHHHH
Q 042193 672 EICQRACKYA 681 (784)
Q Consensus 672 ~l~~~a~~~a 681 (784)
++++.++..+
T Consensus 233 ~~l~~~~~~~ 242 (353)
T 1sxj_D 233 TLLQSASKGA 242 (353)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHhc
Confidence 6666655443
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.47 E-value=2.2e-14 Score=140.34 Aligned_cols=150 Identities=23% Similarity=0.370 Sum_probs=107.6
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFVSVKG 527 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~i~v~~ 527 (784)
.|+++.|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ +.+++.++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 467777777776666554421 234679999999999999999999986 678888887
Q ss_pred ccch--hcccCcchHHHHHHHHHhhhC-CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 528 PELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 528 ~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
..+. ..+.+.....+..++..+... .++++||||+|.+...+... + ....+.+.|...++. .++++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~---~~~~~~~~l~~~~~~----~~~~ii~ 157 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--E---GALDAGNILKPMLAR----GELRCIG 157 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--T---TSCCTHHHHHHHHHT----TCSCEEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--c---cchHHHHHHHHHHhc----CCeeEEE
Confidence 7765 234555666788888777665 67899999999997654311 1 112233444444442 4578899
Q ss_pred ecCCCC-----CCCccccCCCCcccccccCCCC
Q 042193 605 ATNRPD-----VIDPALLRPGRLDQLIYIPLPD 632 (784)
Q Consensus 605 aTn~~~-----~ld~allr~gRf~~~i~~~~p~ 632 (784)
+||.++ .+|+++.+ ||+. +++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 158 ATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 999875 68999999 9984 9999885
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.47 E-value=9.6e-14 Score=135.77 Aligned_cols=155 Identities=24% Similarity=0.393 Sum_probs=111.1
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcE
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFF 249 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~ 249 (784)
...+..++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++.+++.+ +..+
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34455788899999998888776632 235689999999999999999999987 6677
Q ss_pred EEEechhhhh--hhcchhHHHHHHHHHHHHhc-CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEE
Q 042193 250 FLINGPEIMS--KLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVV 326 (784)
Q Consensus 250 ~~v~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 326 (784)
+.+++..+.. .+.+.....+..++..+... .+.+++|||++.+.+.+...... ..+.+.|...++ ...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--LDAGNILKPMLA----RGELRC 155 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--CCTHHHHHHHHH----TTCSCE
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--hHHHHHHHHHHh----cCCeeE
Confidence 8888777653 24455666777777776655 67899999999998554311100 112233334343 356778
Q ss_pred EEEcCCCC-----CCCHHHHhcCCcceEEEeCCCC
Q 042193 327 MGATNRPN-----SIDPALRRFGRFDREIDIGVPD 356 (784)
Q Consensus 327 I~atn~~~-----~ld~al~r~~rf~~~i~i~~p~ 356 (784)
|++++.+. .+++++++ ||.. +.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 88888765 68999998 8985 8888875
No 117
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.46 E-value=1e-12 Score=146.63 Aligned_cols=172 Identities=20% Similarity=0.307 Sum_probs=119.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
+.+++|+||||||||||++++++.+ +..++++++.++...+...........|.......+++|||||++.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5689999999999999999999988 77889999888765443332222122333333336889999999998753
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCC---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHc-
Q 042193 296 REKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTK- 369 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~- 369 (784)
. .....|+..++.+......+|+++.+.+.. +++.+++ ||. ..+.++.|+.++|.+|++..+.
T Consensus 210 ~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp H---------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 122345555554444556677766666654 7888887 664 6789999999999999997765
Q ss_pred -CCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHH
Q 042193 370 -NMKLAEDVDLERVARDTHGYVGADLAALCTEAALQC 405 (784)
Q Consensus 370 -~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 405 (784)
++.+.++. +..++..+.| ..+++..++..+...+
T Consensus 279 ~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 279 EHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 34444443 7788888766 5567777776665443
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=1.7e-12 Score=142.58 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=132.0
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEechh
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 256 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~~~v~~~~ 256 (784)
.+++.|.+++++.+.+++...+. -..+.+++|+||||||||++++.+++.+ +..++.++|..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 47899999999998876643211 1346789999999999999999999988 77788999864
Q ss_pred hhhh----------------hcch-hHHHHHHHHHHHHh-cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 042193 257 IMSK----------------LAGE-SESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL 318 (784)
Q Consensus 257 l~~~----------------~~g~-~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~ 318 (784)
..+. ..+. ....+..+++.... ..|.+|||||++.+.... ....+...++..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 3211 0111 12224444444433 347899999999986442 0123344445444433
Q ss_pred ccCCcEEEEEEcCCC---CCCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHHHcC----CCcccchhhhHHHHhcC---
Q 042193 319 KSRAHVVVMGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVFRIHTKN----MKLAEDVDLERVARDTH--- 387 (784)
Q Consensus 319 ~~~~~vivI~atn~~---~~ld~al~r~~rf~~-~i~i~~p~~~~R~~il~~~~~~----~~~~~~~~l~~la~~t~--- 387 (784)
....++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++..++++..+.. ..+. +..+..++..+.
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAAREH 239 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHSSS
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhc
Confidence 214577888899887 678888887 7765 7899999999999999877653 2232 333667777776
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 042193 388 GYVGADLAALCTEAALQC 405 (784)
Q Consensus 388 g~~~~dl~~l~~~a~~~~ 405 (784)
|.. ..+..++..+...+
T Consensus 240 G~~-r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 240 GDA-RRALDLLRVAGEIA 256 (387)
T ss_dssp CCH-HHHHHHHHHHHHHH
T ss_pred cCH-HHHHHHHHHHHHHH
Confidence 643 44556666665443
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.45 E-value=7.6e-13 Score=142.09 Aligned_cols=180 Identities=18% Similarity=0.274 Sum_probs=128.6
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
+++.+.+|+++.|.++.++.+++++.. -..+..+|++||||||||++++++++.++..++.+++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~ 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC
Confidence 456778899999999999999888762 12345688899999999999999999999999999976532
Q ss_pred hhhcchhHHHHHHHHHHHHhc-----CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC
Q 042193 259 SKLAGESESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP 333 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~ 333 (784)
...++..+...... .+.++||||+|.+.. ....+.|+..++... ..+.+|++||.+
T Consensus 86 -------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~ 146 (324)
T 3u61_B 86 -------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNI 146 (324)
T ss_dssp -------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSG
T ss_pred -------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCc
Confidence 23444444443332 568999999998851 123445666666543 356777899999
Q ss_pred CCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHc---------CCCcccchhhhHHHHhcCCCcHH
Q 042193 334 NSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTK---------NMKLAEDVDLERVARDTHGYVGA 392 (784)
Q Consensus 334 ~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~---------~~~~~~~~~l~~la~~t~g~~~~ 392 (784)
..+++++++ |+. .+.++.|+.++|.+|++.... +..+.+...+..++..+.|....
T Consensus 147 ~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 147 DGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp GGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred cccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 999999998 774 699999999998777654322 22232213466777776665443
No 120
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.45 E-value=1.6e-12 Score=142.60 Aligned_cols=218 Identities=19% Similarity=0.243 Sum_probs=130.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhh-----------------hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFK-----------------SIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~-----------------~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
.|+|++.+++.|..++...+....... .-...++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999877743222221100 011234568999999999999999999999999999
Q ss_pred EEechhhh-hhhcchh-HHHHHHHHHHH----HhcCCeEEEeehhhhhcCCCCCCchH---HHHHHHHHHHHHhhccc--
Q 042193 251 LINGPEIM-SKLAGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTNGE---VERRIVSQLLTLMDGLK-- 319 (784)
Q Consensus 251 ~v~~~~l~-~~~~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~-- 319 (784)
.+++..+. ..+.|.. ...+...+... ....++++||||++.+...+...... ....+.+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99988764 2333432 33445555432 23357899999999998764322111 11236778888887531
Q ss_pred -----------------cCCcEEEEEEcCCC-----------------------------------------CCCCHHHH
Q 042193 320 -----------------SRAHVVVMGATNRP-----------------------------------------NSIDPALR 341 (784)
Q Consensus 320 -----------------~~~~vivI~atn~~-----------------------------------------~~ld~al~ 341 (784)
...++++|+++|.. ..+.|.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 11345677776620 12456666
Q ss_pred hcCCcceEEEeCCCCHHHHHHHHHH----H-------H--cCCCc-ccchhhhHHHHhcC--CCcHHHHHHHHHHHHHHH
Q 042193 342 RFGRFDREIDIGVPDEVGRLEVFRI----H-------T--KNMKL-AEDVDLERVARDTH--GYVGADLAALCTEAALQC 405 (784)
Q Consensus 342 r~~rf~~~i~i~~p~~~~R~~il~~----~-------~--~~~~~-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~ 405 (784)
. |++..+.++.++.++...|+.. + . .+..+ .++..+..++.... ....+.+..++..+....
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 5 8888899999999988888862 1 1 11111 12223555555533 355677777777776655
Q ss_pred HH
Q 042193 406 IR 407 (784)
Q Consensus 406 ~~ 407 (784)
+.
T Consensus 340 ~~ 341 (376)
T 1um8_A 340 MF 341 (376)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 121
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.44 E-value=2e-12 Score=137.73 Aligned_cols=201 Identities=18% Similarity=0.274 Sum_probs=132.4
Q ss_pred ccccChHHHHHHHHHHHHcc---cCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 042193 187 DDVGGVRKQMAQIRELVELP---LRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 260 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~ 260 (784)
.++.|.+..++.+...+... +.++ -.+..++||+||||||||++|+++++.+ +.+++.+++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 45889999999988777542 1111 1234579999999999999999999998 455888988765322
Q ss_pred h-----cchhH----HH-HHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------C
Q 042193 261 L-----AGESE----SN-LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS---------R 321 (784)
Q Consensus 261 ~-----~g~~~----~~-l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~ 321 (784)
. .|... .. ...+.........+++||||++.+.+ .+.+.|+..++...- -
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 11000 00 01222333344458999999998742 355667777764321 1
Q ss_pred CcEEEEEEcCC--------------------------CCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC----
Q 042193 322 AHVVVMGATNR--------------------------PNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM---- 371 (784)
Q Consensus 322 ~~vivI~atn~--------------------------~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~---- 371 (784)
.++++|++||. ...+++++.. ||+..+.+.+|+.+++..|++.++...
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 26778899998 3456777776 999999999999999999998765432
Q ss_pred -----Cc-ccchhhhHHHHhcC--CCcHHHHHHHHHHHHHHHHH
Q 042193 372 -----KL-AEDVDLERVARDTH--GYVGADLAALCTEAALQCIR 407 (784)
Q Consensus 372 -----~~-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~ 407 (784)
.+ .++..+..++.... .+..+++..++..+...++.
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 11 12233556666544 56678888888877665544
No 122
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.1e-12 Score=140.50 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=129.6
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPEL 530 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l 530 (784)
...|+++.|.+.+++.|...+.. + ..+. ++|+||+|+|||++|++++..+ +..++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 34578888999998888776542 1 2223 9999999999999999999985 345777776653
Q ss_pred hhcccCcchHHHHHHHHHhh-------hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 531 LTMWFGESEANVREIFDKAR-------QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~-------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
. ....++.+++... ...+.++||||+|.+.. ...+.|+..++.. ..++.+|
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i 141 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--SNSTRFA 141 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--TTTEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--CCCceEE
Confidence 1 1344555555443 23478999999998743 2345666666653 3456777
Q ss_pred EecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 604 GATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 604 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
.+||.++.+.+++.+ |+. .+.|++|+.++..++++..++..++. ++..+..+++.+.| +.+.+.++++.++
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 788889999999988 775 89999999999999999887654433 22346778888876 4445455555444
No 123
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=5.3e-13 Score=152.37 Aligned_cols=197 Identities=20% Similarity=0.289 Sum_probs=128.8
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHccc-CChhhhhhhCC---CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPL-RHPQLFKSIGV---KPPKGILLYGPPGTGKTLIARAVANETGAFFFLING 254 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~l~i---~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~ 254 (784)
+++.+.+|++++|.++.++.+++++.... .++..++..+. .++.++||+||||||||++|+++|++++..++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 45677789999999999999998886421 11222333333 256789999999999999999999999999999998
Q ss_pred hhhhhhhcchhH-------HHHHHHHHHH-----HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 042193 255 PEIMSKLAGESE-------SNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRA 322 (784)
Q Consensus 255 ~~l~~~~~g~~~-------~~l~~vf~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 322 (784)
++.......... ..+..+|..+ ....+.+|||||+|.+..... .....|+.+++. .+.
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRK--TST 180 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHH--CSS
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHh--cCC
Confidence 775443211100 0012223322 225678999999999976432 123455565554 234
Q ss_pred cEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHc--CCCcccchhhhHHHHhcCCCc
Q 042193 323 HVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTK--NMKLAEDVDLERVARDTHGYV 390 (784)
Q Consensus 323 ~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~~~~~~~l~~la~~t~g~~ 390 (784)
.+++++++.....+.+ ++ |+...+.++.|+.+++.+++...+. +..+..+ .+..++..+.|-.
T Consensus 181 ~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~Gdi 245 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRGDI 245 (516)
T ss_dssp CEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTTCH
T ss_pred CEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCcH
Confidence 5666555443333433 33 4556899999999999999986653 3444443 4778888876643
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=9.5e-12 Score=124.97 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=122.3
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-----GAFFFLING 254 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~ 254 (784)
.+.+..++++.|.++.++.+.+++... ...+++|+||||||||++++.+++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 456677889999999999998877541 23359999999999999999999886 345677776
Q ss_pred hhhhhhhcchhHHHHHHHHHHHH------hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEE
Q 042193 255 PEIMSKLAGESESNLRKAFEEAE------KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMG 328 (784)
Q Consensus 255 ~~l~~~~~g~~~~~l~~vf~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 328 (784)
..... ...+...+.... ...+.+++|||++.+.+. ....|+..++.. ...+.+|+
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~--~~~~~~i~ 137 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY--SKSCRFIL 137 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT--TTTEEEEE
T ss_pred ccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc--CCCCeEEE
Confidence 54322 112222222222 246789999999987531 234556666543 34567778
Q ss_pred EcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC--CCcccchhhhHHHHhcCCCc
Q 042193 329 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN--MKLAEDVDLERVARDTHGYV 390 (784)
Q Consensus 329 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g~~ 390 (784)
++|.+..+++.+.+ |+. .+.++.|+.++..++++..+.. ..+. +..+..++..+.|..
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~ 197 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKIT-EDGLEALIYISGGDF 197 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCH
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCH
Confidence 88988889999987 776 7899999999999999877643 2332 334667777776643
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.43 E-value=5e-12 Score=129.02 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=121.4
Q ss_pred CCcccccC---hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhh
Q 042193 184 VGYDDVGG---VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI 257 (784)
Q Consensus 184 ~~~~~i~G---~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---~~~~~v~~~~l 257 (784)
.+|+++.| ....++.+..+... ..+.+++|+||||||||++++++++.+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45666665 34556666655543 2357899999999999999999998874 66788888776
Q ss_pred hhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcE-EEEEEcCCCC--
Q 042193 258 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHV-VVMGATNRPN-- 334 (784)
Q Consensus 258 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-ivI~atn~~~-- 334 (784)
....... ++. ...+.+++|||++.+.... .....|+..++.......+ +|++++..+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 5433211 111 1346899999999885431 1123344555444333333 5555555554
Q ss_pred -CCCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHHHH
Q 042193 335 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAALQC 405 (784)
Q Consensus 335 -~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 405 (784)
.+++.+.+ ||. ..++++.|+.+++.+++..++...... .+..+..++..+.| ..+.+..++..+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 45577877 664 789999999999999999877543321 23346777777765 4566667776665544
No 126
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.43 E-value=2.6e-12 Score=143.25 Aligned_cols=185 Identities=20% Similarity=0.270 Sum_probs=126.4
Q ss_pred hhcCCCCcccccChHHHH---HHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 042193 179 ERLNEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP 255 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~ 255 (784)
+.+.+.+++++.|.+..+ ..++..+... ...++||+|||||||||+|+++++.++..++.+++.
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 456677899999999988 5666665431 125899999999999999999999999999999864
Q ss_pred hhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEc-
Q 042193 256 EIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGAT- 330 (784)
Q Consensus 256 ~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~at- 330 (784)
.. ....++.++..+. ...+.+|||||+|.+.... ...|+..++. ..+++|++|
T Consensus 85 ~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att 142 (447)
T 3pvs_A 85 TS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATT 142 (447)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEES
T ss_pred cC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCC
Confidence 32 1233444554443 3467899999999885432 2335555653 346666666
Q ss_pred -CCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC-------Cc-ccchhhhHHHHhcCCCcHHHHHHHHHHH
Q 042193 331 -NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM-------KL-AEDVDLERVARDTHGYVGADLAALCTEA 401 (784)
Q Consensus 331 -n~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~-------~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a 401 (784)
|....+++++.+ |+. .+.+..|+.++...+++..+... .+ .++..++.++..+.|.. +.+..++..+
T Consensus 143 ~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~-R~lln~Le~a 218 (447)
T 3pvs_A 143 ENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA-RRALNTLEMM 218 (447)
T ss_dssp SCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH-HHHHHHHHHH
T ss_pred CCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH-HHHHHHHHHH
Confidence 444578999988 765 67899999999999999877641 11 23334677777766643 4444555544
Q ss_pred H
Q 042193 402 A 402 (784)
Q Consensus 402 ~ 402 (784)
.
T Consensus 219 ~ 219 (447)
T 3pvs_A 219 A 219 (447)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.42 E-value=9.5e-13 Score=139.09 Aligned_cols=159 Identities=12% Similarity=0.128 Sum_probs=112.3
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEechhhh
Q 042193 189 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIM 258 (784)
Q Consensus 189 i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~~~v~~~~l~ 258 (784)
|-|-++++++|...+.-.+ .-..+.+++|+||||||||++++.+++++ ...++.+||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5566777777765554322 22467899999999999999999999998 3457889986533
Q ss_pred h----------hh------cchhHHHHHHHHHHH--HhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 042193 259 S----------KL------AGESESNLRKAFEEA--EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320 (784)
Q Consensus 259 ~----------~~------~g~~~~~l~~vf~~a--~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 320 (784)
+ .. .+.....+...|... ....+.|+++||+|.+. . ..++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--cc
Confidence 2 11 133456677888764 34567899999999997 1 234445555443 23
Q ss_pred CCcEEEEEEcCCCCCCCHHH----HhcCCcc-eEEEeCCCCHHHHHHHHHHHHcC
Q 042193 321 RAHVVVMGATNRPNSIDPAL----RRFGRFD-REIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 321 ~~~vivI~atn~~~~ld~al----~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
..++++|+++|..+..+..+ ++ ||. ..|.|++++.++..+|++..+..
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 46789999999887544333 44 675 57999999999999999977654
No 128
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.42 E-value=1.1e-12 Score=140.10 Aligned_cols=188 Identities=20% Similarity=0.240 Sum_probs=130.3
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPEL 530 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l 530 (784)
...|+++.|.+.+++.+...+.. + . ..+++|+||||||||++|++++..+ +.+++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-----------K-N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-----------T-C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-----------C-C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 45688899999999988876642 1 1 2239999999999999999999986 345788887764
Q ss_pred hhcccCcchHHHHHHHHHh-h-hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 531 LTMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a-~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
.+ .......+....... . ...+.++||||+|.+.. ...+.|+..++.. ..++.+|++||.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 32 111222222222111 1 24478999999998743 2456666666643 346788888999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 609 PDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 609 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
++.+++++.+ |+. .+.|++|+.+++.+++...+++.++.- +..+..+++.+.| +.+.+.++++.++
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999998 886 899999999999999999887766542 2336677776655 4445555555443
No 129
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.40 E-value=1.9e-12 Score=141.57 Aligned_cols=185 Identities=22% Similarity=0.311 Sum_probs=133.1
Q ss_pred cccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCc---------------
Q 042193 457 VSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 521 (784)
Q Consensus 457 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~--------------- 521 (784)
..|+++.|.+.+++.|...+.. + ..+..++|+||+|+|||++++++++.+...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3578899999998888776542 1 233468999999999999999999987531
Q ss_pred ---------EEEEecccchhcccCcchHHHHHHHHHhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 522 ---------FVSVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 522 ---------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
++.+++.. ......++.+++.+.. ..+.|+||||+|.+. ...++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~Ll 140 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 140 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHHHHH
Confidence 23332221 0112346667766543 346899999999863 23567788
Q ss_pred HHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCCCCH
Q 042193 589 TEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSG 667 (784)
Q Consensus 589 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~sg 667 (784)
..++.. ..++++|++||.++.+.+++.+ |+ ..+.|++|+.++..++++..++..++.- +..+..+++.+.| +.
T Consensus 141 ~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 888753 3467788888888889999887 77 6899999999999999998887655442 2236778888876 66
Q ss_pred HHHHHHHHHHHH
Q 042193 668 ADITEICQRACK 679 (784)
Q Consensus 668 ~di~~l~~~a~~ 679 (784)
+++.+++..+..
T Consensus 215 r~~~~~l~~~~~ 226 (373)
T 1jr3_A 215 RDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778778776653
No 130
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.2e-13 Score=159.51 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=104.3
Q ss_pred ccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEE----ecccchhccc
Q 042193 460 EDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSV----KGPELLTMWF 535 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v----~~~~l~~~~~ 535 (784)
..+.|++.+|+.+.-.+.... ...+....+....++||+||||||||++|+++|..++..++.. ++.++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 347788888888755443211 1111112333445799999999999999999999987655432 2222221111
Q ss_pred -----CcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----------CCCc
Q 042193 536 -----GESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----------AKKT 599 (784)
Q Consensus 536 -----g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----------~~~~ 599 (784)
|......+ .+..|. .+++||||||.+. ...++.|+..|+... ...+
T Consensus 373 ~~~~~g~~~~~~G-~l~~A~---~gil~IDEid~l~--------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 373 REKGTGEYYLEAG-ALVLAD---GGIAVIDEIDKMR--------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp SGGGTSSCSEEEC-HHHHHS---SSEECCTTTTCCC--------------SHHHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred eccccccccccCC-eeEecC---CCcEEeehhhhCC--------------HhHhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 11111111 222332 2599999999863 335677888887432 1246
Q ss_pred EEEEEecCCCC-------------CCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcc
Q 042193 600 VFIIGATNRPD-------------VIDPALLRPGRLDQ-LIYIPLPDEASRLQIFKACLRK 646 (784)
Q Consensus 600 v~vi~aTn~~~-------------~ld~allr~gRf~~-~i~~~~p~~~~r~~il~~~~~~ 646 (784)
+.||||||.++ .|++++++ |||. .+..+.|+.+ ...|.+..++.
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 78999999986 89999999 9985 4556677777 88888776654
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=9.9e-12 Score=136.49 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=126.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----------CCcEEEEech
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-----------GAFFFLINGP 255 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-----------~~~~~~v~~~ 255 (784)
+++.|.+++++.+.+++...... ..+.+++|+||||||||++++.+++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 67999999999998877542211 345689999999999999999999987 8889999986
Q ss_pred hhh-hh----------h-------cch-hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHH-HHHHHHHh
Q 042193 256 EIM-SK----------L-------AGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRI-VSQLLTLM 315 (784)
Q Consensus 256 ~l~-~~----------~-------~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v-~~~Ll~~l 315 (784)
... +. . .+. ....+..+++.+.... .+|+|||+|.+...... .+ ...|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~-------~~~l~~l~--- 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGG-------DIVLYQLL--- 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTS-------HHHHHHHH---
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCC-------ceeHHHHh---
Confidence 543 10 0 011 1223444444443333 49999999998654210 12 22333
Q ss_pred hccccCCcEEEEEEcCCC---CCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC----CCcccchhhhHHHHhcC-
Q 042193 316 DGLKSRAHVVVMGATNRP---NSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN----MKLAEDVDLERVARDTH- 387 (784)
Q Consensus 316 d~~~~~~~vivI~atn~~---~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~----~~~~~~~~l~~la~~t~- 387 (784)
... .++.+|++||.+ +.+++.+.+ ||...+.+++++.++..++++.++.. ..+. +..+..++..+.
T Consensus 160 ~~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 233 (384)
T 2qby_B 160 RSD---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAISAK 233 (384)
T ss_dssp TSS---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHT
T ss_pred cCC---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHHHh
Confidence 222 578888899887 678999887 77779999999999999999987652 2222 334667777766
Q ss_pred --CCcHHHHHHHHHHHH
Q 042193 388 --GYVGADLAALCTEAA 402 (784)
Q Consensus 388 --g~~~~dl~~l~~~a~ 402 (784)
|.. ..+..++..+.
T Consensus 234 ~~G~~-r~a~~~l~~a~ 249 (384)
T 2qby_B 234 EHGDA-RKAVNLLFRAA 249 (384)
T ss_dssp TCCCH-HHHHHHHHHHH
T ss_pred ccCCH-HHHHHHHHHHH
Confidence 332 23344555543
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=3.7e-12 Score=136.55 Aligned_cols=189 Identities=22% Similarity=0.277 Sum_probs=129.9
Q ss_pred CCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-----CcEEEEeccc
Q 042193 455 PNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFVSVKGPE 529 (784)
Q Consensus 455 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~i~v~~~~ 529 (784)
....|+++.|.+.+++.|...+.. + ...+++|+||||+|||++|++++..+. ..++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 345688899999999888776542 1 123499999999999999999999853 3477777665
Q ss_pred chhcccCcchHHHHHHHHHh-h-hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 530 LLTMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 530 l~~~~~g~~~~~i~~~f~~a-~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
..+. ......+....... . ...+.++||||+|.+.. ..++.|+..|+.. ..++.+|.+||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 4221 11111122111110 1 14578999999998743 3456777777753 34567778889
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 608 RPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 608 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
.++.+.+++.+ |+. .+.|++|+.++..++++..++..++. ++..+..+++.+.| +.+.+.++++.+.
T Consensus 149 ~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 149 YSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp CGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 99999999987 886 78999999999999999888766543 22346778887766 5556666666554
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=1e-11 Score=126.39 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=128.9
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+.+.+..++++.|.+..++.+.+.+... ..+..++|+||||||||++++.+++.+...
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456667889999999999988877531 123579999999999999999999887432
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.++... ......++.+++... ...+.+++|||++.+.+ .....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~ 145 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNA 145 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHH
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHH
Confidence 12222111 112234455555432 23478999999998731 23455
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+.+|.+|+.+..+++.+.+ |+ ..+.++.++.++..++++.++..... .++..+..++..+.|
T Consensus 146 l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 219 (250)
T 1njg_A 146 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 219 (250)
T ss_dssp HHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-
T ss_pred HHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Confidence 66666543 3467788888888888998877 54 67899999999999999877654332 123347788888877
Q ss_pred cHHHHHHHHHHH
Q 042193 390 VGADLAALCTEA 401 (784)
Q Consensus 390 ~~~dl~~l~~~a 401 (784)
....+..++..+
T Consensus 220 ~~~~~~~~~~~~ 231 (250)
T 1njg_A 220 SLRDALSLTDQA 231 (250)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 556666666655
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.5e-12 Score=138.62 Aligned_cols=187 Identities=15% Similarity=0.193 Sum_probs=125.7
Q ss_pred Ccccccccchhhhhhhhcccc-ccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh-C--Cc----------
Q 042193 456 NVSWEDIGGLETVKRELQETV-QYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC-Q--AN---------- 521 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~--~~---------- 521 (784)
..+|+++.|.+.+++.|...+ .. + ..+. ++|+||||+||||+++++++.+ + ..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 346788999999998887765 21 1 2233 9999999999999999999964 2 11
Q ss_pred ----------------EEEEecccchhcccCcchHHHHHHHHHhh--------------hCCCeEEEEeccchhhhhcCC
Q 042193 522 ----------------FVSVKGPELLTMWFGESEANVREIFDKAR--------------QSAPCVLFFDELDSIATQRGA 571 (784)
Q Consensus 522 ----------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~--------------~~~p~vl~iDEid~l~~~r~~ 571 (784)
++.++..+.. ......++..++.+. ...|.+++|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 2222221110 001113455544432 2257799999999853
Q ss_pred CCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-
Q 042193 572 SVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS- 650 (784)
Q Consensus 572 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~- 650 (784)
....+.|+..|+.... +..+|.+||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++.
T Consensus 148 ---------~~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ---------HHHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ---------HHHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 2345667777776433 56777788889999999988 88 789999999999999999888765543
Q ss_pred C-ccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 042193 651 P-DVDLSALARYTHGFSGADITEICQRACK 679 (784)
Q Consensus 651 ~-~~~~~~la~~~~g~sg~di~~l~~~a~~ 679 (784)
+ +..+..+++.+.| +.+++.++++.++.
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 2 3447888888876 55566666665543
No 135
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.37 E-value=4.3e-13 Score=112.99 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCc
Q 042193 632 DEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDV 711 (784)
Q Consensus 632 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (784)
|.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++. .
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------~ 56 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------R 56 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-------------------------C
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------------------c
Confidence 678999999999999999889999999999999999999999999999998754 2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHH
Q 042193 712 DEITAAHFEESMKYARRSVSDADIRKYQ 739 (784)
Q Consensus 712 ~~v~~~~~~~al~~~~~s~~~~~~~~~~ 739 (784)
..|+++||..|++.++|+++ +++++|+
T Consensus 57 ~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 57 YIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp SSBCHHHHHHHHHHHCC-----------
T ss_pred CCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 36999999999999999999 8888875
No 136
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.36 E-value=1.1e-12 Score=111.50 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCc
Q 042193 632 DEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDV 711 (784)
Q Consensus 632 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (784)
|.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++. .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------~ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------R 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-------------------------C
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-------------------------c
Confidence 567899999999999999999999999999999999999999999999999874 2
Q ss_pred ccccHHHHHHHHhhccCCCCH-HHHHHHHHHH
Q 042193 712 DEITAAHFEESMKYARRSVSD-ADIRKYQLFA 742 (784)
Q Consensus 712 ~~v~~~~~~~al~~~~~s~~~-~~~~~~~~~~ 742 (784)
..|+.+||+.|++.+.++... .....|+.|.
T Consensus 57 ~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 57 KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp SSBCHHHHHHHHHHHTC---------------
T ss_pred ccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 369999999999999998865 4588888774
No 137
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.35 E-value=1.1e-12 Score=136.52 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=112.7
Q ss_pred ccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchhc-
Q 042193 458 SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLTM- 533 (784)
Q Consensus 458 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~~- 533 (784)
+|+++.|.+...+.+.+.+... .....+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5667777777766665544321 12235699999999999999999999874 68999998876321
Q ss_pred ----ccCcchH-------HHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-------
Q 042193 534 ----WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN------- 595 (784)
Q Consensus 534 ----~~g~~~~-------~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------- 595 (784)
.+|.... .....|..+ ..++||||||+.+.. .++..|+..|+...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCc
Confidence 1111100 001123333 246999999998743 35567777776421
Q ss_pred --CCCcEEEEEecCCC-------CCCCccccCCCCcc-cccccCCCCH--HHHHHHHHHHh----ccCCCCC--ccC---
Q 042193 596 --AKKTVFIIGATNRP-------DVIDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACL----RKSPISP--DVD--- 654 (784)
Q Consensus 596 --~~~~v~vi~aTn~~-------~~ld~allr~gRf~-~~i~~~~p~~--~~r~~il~~~~----~~~~~~~--~~~--- 654 (784)
...++.+|+|||.+ ..+++++.+ ||. ..+.+|+.+. ++...+++.++ +..+... ..+
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12357889999985 246788887 886 3455655543 44444444443 2233211 122
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 655 LSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 655 ~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
+..|..+.-..+.+++.++++.++..+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 444554443335678888888876543
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.6e-11 Score=131.79 Aligned_cols=200 Identities=20% Similarity=0.261 Sum_probs=130.6
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCcEEEEechhhh
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM 258 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l------~~~~~~v~~~~l~ 258 (784)
..+++.|.+++++.+.+.+...+. -..+..++|+||||||||++++.+++.+ +..++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347799999999988876643211 1346689999999999999999999988 7888999976432
Q ss_pred h------h----------hcch-hHHHHHHHHHHHHhc-CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 042193 259 S------K----------LAGE-SESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS 320 (784)
Q Consensus 259 ~------~----------~~g~-~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 320 (784)
. . ..+. .......+++..... .|.+|+|||++.+...... .+...++..++.. .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~-~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV-N 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC-C
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc-C
Confidence 1 1 0111 222244444444433 3899999999998754311 2345566666544 3
Q ss_pred CCcEEEEEEcCCC---CCCCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHHHcC----CCcccchhhhHHHHhcC---CC
Q 042193 321 RAHVVVMGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVFRIHTKN----MKLAEDVDLERVARDTH---GY 389 (784)
Q Consensus 321 ~~~vivI~atn~~---~~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~----~~~~~~~~l~~la~~t~---g~ 389 (784)
..++.+|++++.+ ..+++.+.+ ||. +.+.+++++.++..+++...+.. ..+ .+..+..++..+. |.
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G~ 237 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PDNVIKLCAALAAREHGD 237 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhcCC
Confidence 4578888888876 456777776 554 47999999999999999876542 122 2333566666665 65
Q ss_pred cHHHHHHHHHHHHHHH
Q 042193 390 VGADLAALCTEAALQC 405 (784)
Q Consensus 390 ~~~dl~~l~~~a~~~~ 405 (784)
.. .+..++..+...+
T Consensus 238 ~r-~~~~ll~~a~~~a 252 (386)
T 2qby_A 238 AR-RALDLLRVSGEIA 252 (386)
T ss_dssp HH-HHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHH
Confidence 43 3445666665443
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.34 E-value=1e-11 Score=133.67 Aligned_cols=153 Identities=23% Similarity=0.257 Sum_probs=105.7
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech------hhh
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIM 258 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~------~l~ 258 (784)
.+.++.|.++.++.+...+.. +.++||+||||||||++|+++++.++.+++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 346788998888777655432 35899999999999999999999999999888873 222
Q ss_pred hhhcchhHHHHHHHHHHHHhcC---CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc---------ccCCcEEE
Q 042193 259 SKLAGESESNLRKAFEEAEKNA---PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL---------KSRAHVVV 326 (784)
Q Consensus 259 ~~~~g~~~~~l~~vf~~a~~~~---p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~---------~~~~~viv 326 (784)
+........ ..+. .... .+++|+||++.+.+ ...+.|+..++.. .....+++
T Consensus 90 g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTT---TEEE--EEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCC---CceE--eccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 211100000 0000 0011 36999999998642 2345566666532 12346778
Q ss_pred EEEcCCCC-----CCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 327 MGATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 327 I~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
++++|+.+ .+++++.+ ||...+.++.|+.+++.+|++.+...
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88888554 38999998 99888999999999999999987654
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=3.6e-11 Score=132.13 Aligned_cols=198 Identities=20% Similarity=0.197 Sum_probs=130.7
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCc--eEEEECCCCCcHHHHHHHHHHHh----CCcEEEEechhhhh
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK--GILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMS 259 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~--~vLL~GppGtGKTtla~~la~~l----~~~~~~v~~~~l~~ 259 (784)
.+++.|.+++++.+.+.+...... ..+. +++|+||||||||++++.+++.+ +..++.++|....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 367999999999998877542111 2334 89999999999999999999998 56678888754321
Q ss_pred ------hh----------cchhHHH-HHHHHHHHH-hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcccc-
Q 042193 260 ------KL----------AGESESN-LRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKS- 320 (784)
Q Consensus 260 ------~~----------~g~~~~~-l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~- 320 (784)
.. .+..... ...+..... ...|.+++|||++.+. ......|+.+++....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCC
Confidence 10 0111122 222222222 2458899999999881 2345666666655432
Q ss_pred -CCcEEEEEEcCCC---CCCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHHHcC---CCcccchhhhHHHHhc------
Q 042193 321 -RAHVVVMGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVFRIHTKN---MKLAEDVDLERVARDT------ 386 (784)
Q Consensus 321 -~~~vivI~atn~~---~~ld~al~r~~rf~~-~i~i~~p~~~~R~~il~~~~~~---~~~~~~~~l~~la~~t------ 386 (784)
..++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ....++..+..++..+
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1477888888887 667888766 6654 7899999999999999877643 1122344577788888
Q ss_pred ---CCCcHHHHHHHHHHHHHHHH
Q 042193 387 ---HGYVGADLAALCTEAALQCI 406 (784)
Q Consensus 387 ---~g~~~~dl~~l~~~a~~~~~ 406 (784)
.|. ...+..++..+...+.
T Consensus 234 ~~~~G~-~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 234 DTNRGD-ARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CTTSCC-HHHHHHHHHHHHHHHH
T ss_pred CCCCCc-HHHHHHHHHHHHHHHH
Confidence 443 3455666666655443
No 141
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.32 E-value=7.6e-11 Score=126.90 Aligned_cols=195 Identities=21% Similarity=0.341 Sum_probs=130.0
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 260 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~ 260 (784)
+...+++++.|.+..++.+...+.... .. + .++.+++|+||||||||||++++|+.++..+...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~-----~~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAK-----MR--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHH-----HH--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHH-----hc--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 444567788888888777765553210 00 1 24568999999999999999999999998887777654321
Q ss_pred hcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-------c---------CCcE
Q 042193 261 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-------S---------RAHV 324 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------~---------~~~v 324 (784)
...+..++.. .....|+|+||++.+.+ . +.+.|+..+.... . ...+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~-------~----~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNK-------A----VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCH-------H----HHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCH-------H----HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1122333322 23467999999998853 1 1223333332211 0 1236
Q ss_pred EEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCcHHHHHHHHHHHHH
Q 042193 325 VVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYVGADLAALCTEAAL 403 (784)
Q Consensus 325 ivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 403 (784)
.++++|+++..+++.+++ ||...+.+..++.++..++++...+...+. ++..+..++..+.|.. +.+..+++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Confidence 677899999999999998 898888999999999999998776544332 2334778888888765 566666666544
Q ss_pred HH
Q 042193 404 QC 405 (784)
Q Consensus 404 ~~ 405 (784)
.+
T Consensus 229 ~a 230 (334)
T 1in4_A 229 ML 230 (334)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 142
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=108.47 Aligned_cols=78 Identities=29% Similarity=0.476 Sum_probs=71.7
Q ss_pred ccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 042193 627 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAM 706 (784)
Q Consensus 627 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (784)
+-.+||.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 45789999999999999999999889999999999999999999999999999999864
Q ss_pred cccCcccccHHHHHHHHhhccCC
Q 042193 707 EVDDVDEITAAHFEESMKYARRS 729 (784)
Q Consensus 707 ~~~~~~~v~~~~~~~al~~~~~s 729 (784)
...|+++||+.|++.++|.
T Consensus 66 ----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ----CSEECHHHHHHHHHHHHCC
T ss_pred ----CCCCCHHHHHHHHHHHccC
Confidence 2369999999999998875
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=2.1e-11 Score=132.23 Aligned_cols=178 Identities=21% Similarity=0.261 Sum_probs=122.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CcEEEE
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG------AFFFLI 252 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~------~~~~~v 252 (784)
+.+.+..|+++.|.++.++.+...+.. ....++||+||||||||++++++++.++ ..+..+
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 356777899999999999888877643 1123499999999999999999999864 346777
Q ss_pred echhhhhhhcchhHHHHHHHHHHHH----------------hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 253 NGPEIMSKLAGESESNLRKAFEEAE----------------KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 253 ~~~~l~~~~~g~~~~~l~~vf~~a~----------------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
++.+... ...++..+.... ...+.++++||++.+.+. ..+.|+..++
T Consensus 96 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le 158 (353)
T 1sxj_D 96 NASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTME 158 (353)
T ss_dssp CSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHH
T ss_pred ccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHH
Confidence 7655311 111221111111 123569999999988532 2355666676
Q ss_pred ccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchhhhHHHHhcCCCcH
Q 042193 317 GLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVDLERVARDTHGYVG 391 (784)
Q Consensus 317 ~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~ 391 (784)
.... ...+|.++|.+..+.+.+++ |+. .+.++.|+.++...+++..+....+ .++..+..++..+.|...
T Consensus 159 ~~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r 229 (353)
T 1sxj_D 159 TYSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR 229 (353)
T ss_dssp HTTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH
T ss_pred hcCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 5433 34555677888889999988 775 6899999999999999877654332 233447888888887644
No 144
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.31 E-value=3.1e-11 Score=130.72 Aligned_cols=160 Identities=23% Similarity=0.344 Sum_probs=97.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE----Eechh
Q 042193 181 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFL----INGPE 256 (784)
Q Consensus 181 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~----v~~~~ 256 (784)
.++.+|+++.|.+..++.+...... ....++||+||||||||++|+++++.++..... +++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3456789999999866554322211 113469999999999999999999988631110 01110
Q ss_pred hhh---------------------hhcchhHHHH------HHHHHHH---------HhcCCeEEEeehhhhhcCCCCCCc
Q 042193 257 IMS---------------------KLAGESESNL------RKAFEEA---------EKNAPSIIFIDEIDSIAPKREKTN 300 (784)
Q Consensus 257 l~~---------------------~~~g~~~~~l------~~vf~~a---------~~~~p~il~iDEid~l~~~~~~~~ 300 (784)
... ...+.....+ ...+... ....++++||||++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 000 0001111110 1112111 111367999999998742
Q ss_pred hHHHHHHHHHHHHHhhcc----c-------cCCcEEEEEEcCCCC-CCCHHHHhcCCcceEEEeCCC-CHHHHHHHHHH
Q 042193 301 GEVERRIVSQLLTLMDGL----K-------SRAHVVVMGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLEVFRI 366 (784)
Q Consensus 301 ~~~~~~v~~~Ll~~ld~~----~-------~~~~vivI~atn~~~-~ld~al~r~~rf~~~i~i~~p-~~~~R~~il~~ 366 (784)
...+.|+..++.- . ....+++|+++|..+ .+++++.+ ||+..+.++.| +.+.+.+|++.
T Consensus 159 -----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 -----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 2344566655531 1 113788999999754 78999998 99888999999 67777788865
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=9.4e-11 Score=125.51 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=122.9
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG-----AFFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~-----~~~~~v~ 253 (784)
+.+.+..|+++.|.++.++.+..++.. ....++||+||||||||++++++++.+. ..++.++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 356777899999999999998877653 1223599999999999999999999863 2367777
Q ss_pred chhhhhhhcchhHHHHHHHHHH-HH-hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcC
Q 042193 254 GPEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATN 331 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn 331 (784)
+.+..+. ......+...... +. ...+.++++||+|.+.+ ...+.|+..++.. ...+.+|.+++
T Consensus 84 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~ 148 (327)
T 1iqp_A 84 ASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCN 148 (327)
T ss_dssp TTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEES
T ss_pred ccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 6554221 1111112221110 01 14578999999998842 1234566666643 23567777888
Q ss_pred CCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 332 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 332 ~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
.+..+.+.+.+ |+. .+.+++++.++...+++..+....+. ++..+..++..+.|..
T Consensus 149 ~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 205 (327)
T 1iqp_A 149 YSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 205 (327)
T ss_dssp CGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCH
T ss_pred CccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCH
Confidence 88889999987 665 68999999999999998776544432 2334667777776643
No 146
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.30 E-value=4.5e-12 Score=105.30 Aligned_cols=75 Identities=32% Similarity=0.544 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccc
Q 042193 629 PLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEV 708 (784)
Q Consensus 629 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (784)
|+|+.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 789999999999999999999889999999999999999999999999999999864
Q ss_pred cCcccccHHHHHHHHhhccC
Q 042193 709 DDVDEITAAHFEESMKYARR 728 (784)
Q Consensus 709 ~~~~~v~~~~~~~al~~~~~ 728 (784)
...|+.+||..|++++..
T Consensus 58 --~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 --RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --CSEECHHHHHHHHHHHHC
T ss_pred --CCCCCHHHHHHHHHHHHh
Confidence 236999999999998754
No 147
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.30 E-value=2.4e-12 Score=136.64 Aligned_cols=169 Identities=22% Similarity=0.278 Sum_probs=105.2
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc-----ccC--------cchHHHHHHHHHhhhCCCeE
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM-----WFG--------ESEANVREIFDKARQSAPCV 556 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g--------~~~~~i~~~f~~a~~~~p~v 556 (784)
...++||+||||||||++|++++..+ +.+|+.++++.+... .+| ... .....|..+.. ++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~~---g~ 99 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEADG---GT 99 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHTT---SE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcCC---CE
Confidence 34569999999999999999999976 578999998776321 111 111 12234555543 59
Q ss_pred EEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------CCCcEEEEEecCCC-------CCCCccccCCC
Q 042193 557 LFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------DVIDPALLRPG 620 (784)
Q Consensus 557 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allr~g 620 (784)
||||||+.+.. .++..|+..|+... ...++.||+|||.+ ..+++.+..
T Consensus 100 L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~-- 163 (304)
T 1ojl_A 100 LFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY-- 163 (304)
T ss_dssp EEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--
T ss_pred EEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--
Confidence 99999998743 35677888887542 12357899999986 235556665
Q ss_pred Ccc-cccccCCCC--HHHHHHHHHHHhcc----CCCC----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 621 RLD-QLIYIPLPD--EASRLQIFKACLRK----SPIS----PDVDLSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 621 Rf~-~~i~~~~p~--~~~r~~il~~~~~~----~~~~----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
||. ..|.+|+.. .++...+++.+++. .+.. .+..+..|..+.-.-+.+++.+++..|+..+
T Consensus 164 Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 164 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 664 224455544 23444455544432 2211 1222556666553346689999988887654
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=5.2e-11 Score=127.26 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=124.7
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~ 253 (784)
+.+.+..++++.|.+..++.+.+++.. ....+++|+||||+|||++++.+++.+ +..++.++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 346667789999999999998887653 112249999999999999999999986 23467777
Q ss_pred chhhhhhhcchhHHHHHHHHHHHH-------hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEE
Q 042193 254 GPEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVV 326 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 326 (784)
+.+.. ....++..++... ...+.+++|||+|.+... ..+.|+..++.. ...+.+
T Consensus 80 ~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~--~~~~~~ 140 (323)
T 1sxj_B 80 ASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELY--SNSTRF 140 (323)
T ss_dssp TTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHT--TTTEEE
T ss_pred Ccccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhcc--CCCceE
Confidence 65421 1234455555443 234789999999988531 234455666543 245667
Q ss_pred EEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcC--CCcccchhhhHHHHhcCCCcHH
Q 042193 327 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKN--MKLAEDVDLERVARDTHGYVGA 392 (784)
Q Consensus 327 I~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g~~~~ 392 (784)
|.+|+.+..+.+.+++ |+. .+.++.|+.++..+++...+.. ..+. +..+..++..+.|....
T Consensus 141 il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHH
T ss_pred EEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 7788888889999987 654 7899999999999999876643 3333 33467788887775443
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.29 E-value=2e-11 Score=130.29 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=121.7
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET-----GAFFFLING 254 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~ 254 (784)
.+.+..|+++.|.+..++.+.+.+.. ....++||+||||||||++++++++.+ +..++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 45667889999999998888766532 122349999999999999999999986 234677887
Q ss_pred hhhhhhhcchhHHHHHHHHHH-HH-hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 255 PEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 255 ~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
.+..+. ......+...... +. ...+.+++|||+|.+.. ...+.|+..++.. ...+.+|++||.
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 654221 1111122222111 01 14478999999998842 1234455555542 346778888899
Q ss_pred CCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCCc
Q 042193 333 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGYV 390 (784)
Q Consensus 333 ~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 390 (784)
+..+.+.+++ |+. .+.++.|+.++..+++...+....+. ++..+..++..+.|..
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~ 197 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF 197 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 9899999987 664 78999999999999998877654332 2334667777766643
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=7e-12 Score=135.49 Aligned_cols=171 Identities=20% Similarity=0.257 Sum_probs=116.5
Q ss_pred CcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC-----CcEEEEecccc
Q 042193 456 NVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFVSVKGPEL 530 (784)
Q Consensus 456 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~i~v~~~~l 530 (784)
...|+++.|.+.+++.|...+.. | ..+ +++|+||||||||++++++|+.+. ..++.++.++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 34678888888888888766542 2 122 399999999999999999999863 23566665542
Q ss_pred hhcccCcchHHHHHHHHHhh------hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEE
Q 042193 531 LTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 604 (784)
Q Consensus 531 ~~~~~g~~~~~i~~~f~~a~------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~ 604 (784)
. + ...++....... ...+.|+++||+|.+.. ...+.|+..|+... ....+|.
T Consensus 88 ~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~~~il 145 (340)
T 1sxj_C 88 R----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KNTRFCV 145 (340)
T ss_dssp C----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred c----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CCeEEEE
Confidence 1 1 223333332221 12368999999998743 24567777777543 3455667
Q ss_pred ecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcCC
Q 042193 605 ATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHG 664 (784)
Q Consensus 605 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g 664 (784)
+||.+..+.+++.+ |+. .+.|++++.++..+++...++..++.- +..+..+++.+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78889999999998 886 788999999999999988885444321 2235667776655
No 151
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.24 E-value=5.6e-11 Score=133.62 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=91.7
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEech-----hhhhh
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA--FFFLINGP-----EIMSK 260 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~~-----~l~~~ 260 (784)
.|.|.++.++.+...+.. +.++||+||||||||++|+++++.++. ++..+++. ++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 477888877666544322 458999999999999999999998843 44455442 33332
Q ss_pred hcchhHHHHHHHHHHHHhc---CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhcc---------ccCCcEEEEE
Q 042193 261 LAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGL---------KSRAHVVVMG 328 (784)
Q Consensus 261 ~~g~~~~~l~~vf~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~---------~~~~~vivI~ 328 (784)
+.+..... ...|..+... .++|+|||||+.+. ..+.+.|+..|+.- ..... ++|+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ 154 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVA 154 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhh
Confidence 22211111 1122212111 46799999997653 23556777777531 11223 4566
Q ss_pred EcCCCCC---CCHHHHhcCCcceEEEeCCCCH-HHHHHHHHHHH
Q 042193 329 ATNRPNS---IDPALRRFGRFDREIDIGVPDE-VGRLEVFRIHT 368 (784)
Q Consensus 329 atn~~~~---ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~~ 368 (784)
+||++.. ..+++.+ ||...+.++.|+. +++..|++.+.
T Consensus 155 ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 155 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred ccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 7775322 3457776 8988899999987 67888887543
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=1e-10 Score=127.03 Aligned_cols=178 Identities=15% Similarity=0.224 Sum_probs=115.7
Q ss_pred hcCCCCcccccChHHHHHHHHHHH-HcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-c---------
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA-F--------- 248 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~-~--------- 248 (784)
++.+.+|+++.|.+..++.++.++ .. ....+++|+|||||||||+++++++.+.. .
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 566778899999999888877654 21 11223999999999999999999996421 1
Q ss_pred -------------------EEEEechhhhhhhcchhHHHHHHHHHHHH--------------hcCCeEEEeehhhhhcCC
Q 042193 249 -------------------FFLINGPEIMSKLAGESESNLRKAFEEAE--------------KNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 249 -------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~--------------~~~p~il~iDEid~l~~~ 295 (784)
++.+++.+.. ......++..+..+. ...|.++++||++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-- 147 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-- 147 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--
Confidence 1222221110 001112344444332 2357799999998852
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC--Cc
Q 042193 296 REKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM--KL 373 (784)
Q Consensus 296 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~--~~ 373 (784)
....+.|+..++.... ...+|.+|+.++.+.+.+++ |+ ..+.++.|+.++...+++..+... .+
T Consensus 148 ---------~~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ---------HHHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ---------HHHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 1234456666665433 46777788998899999987 77 678999999999999998776533 33
Q ss_pred ccchhhhHHHHhcCCCc
Q 042193 374 AEDVDLERVARDTHGYV 390 (784)
Q Consensus 374 ~~~~~l~~la~~t~g~~ 390 (784)
..+..+..++..+.|-.
T Consensus 214 ~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNL 230 (354)
T ss_dssp CCSHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHcCCCH
Confidence 31344677777776643
No 153
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=1.6e-10 Score=124.33 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=111.8
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC------------------------cEEEEecccchhcccCcchHHHHHHHH
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFVSVKGPELLTMWFGESEANVREIFD 547 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~~~~~i~~~f~ 547 (784)
+.+..+||+||+|+|||++|+++|..+.. .++.+.+.+- + -......++.+.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHH
Confidence 34567999999999999999999998643 2333333210 0 0112345777877
Q ss_pred Hhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 042193 548 KARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLD 623 (784)
Q Consensus 548 ~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 623 (784)
.+.. ..+.|++|||+|.+.. ...+.||..|+.. ..++++|.+||.++.+.|++++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cce
Confidence 7653 3468999999998743 3468889988853 4467777788889999999998 874
Q ss_pred cccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Q 042193 624 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRA 677 (784)
Q Consensus 624 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a 677 (784)
.+.|++|+.++..++++... .+ ++..+..+++.+.| +.+.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998765 22 23346778887776 444555555443
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.22 E-value=2.5e-10 Score=124.64 Aligned_cols=188 Identities=20% Similarity=0.263 Sum_probs=127.1
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF---------- 248 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~---------- 248 (784)
+.+.+..|+++.|.+..++.+.+.+... ..+..+||+||+|||||++++++++.++..
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3566678899999999999988876431 224478999999999999999999988542
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHH
Q 042193 249 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 310 (784)
Q Consensus 249 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 310 (784)
++.+++.. ......++.+++.+. ...+.+++|||+|.+.. ...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~ 138 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNA 138 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHH
Confidence 12222211 011123455555543 23468999999998742 23455
Q ss_pred HHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcc-cchhhhHHHHhcCCC
Q 042193 311 LLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLA-EDVDLERVARDTHGY 389 (784)
Q Consensus 311 Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 389 (784)
|+..++.. ...+++|++|+.+..+.+.+++ |+ ..+.++.|+.++..++++..+....+. ++..+..++..+.|.
T Consensus 139 Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~ 213 (373)
T 1jr3_A 139 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 (373)
T ss_dssp HHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC
T ss_pred HHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC
Confidence 66666643 3467777788888888898887 65 678999999999999998776543222 223367788888774
Q ss_pred cHHHHHHHHHHH
Q 042193 390 VGADLAALCTEA 401 (784)
Q Consensus 390 ~~~dl~~l~~~a 401 (784)
...+..++..+
T Consensus 214 -~r~~~~~l~~~ 224 (373)
T 1jr3_A 214 -LRDALSLTDQA 224 (373)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 34555555444
No 155
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.21 E-value=1e-11 Score=116.63 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=66.8
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcC
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 570 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 570 (784)
...++|+||||||||++|++++..+ +.+|+ +++..+... ......|..+.. +++||||||.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~---g~l~ldei~~l~~--- 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQG---GTLVLSHPEHLTR--- 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTT---SCEEEECGGGSCH---
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCC---cEEEEcChHHCCH---
Confidence 3569999999999999999999986 67899 998876543 234456666643 5999999998743
Q ss_pred CCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 571 ASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 571 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
..+..|+..|... ..++.+|+|||.+
T Consensus 91 -----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 91 -----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp -----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred -----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 3556677777543 2356788888874
No 156
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.20 E-value=4.8e-12 Score=106.11 Aligned_cols=81 Identities=27% Similarity=0.329 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCccc
Q 042193 634 ASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDE 713 (784)
Q Consensus 634 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (784)
++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++. ...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-------------------------~~~ 55 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------------------RYV 55 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-------------------------CSE
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------------------cCC
Confidence 4689999999999998889999999999999999999999999999999864 236
Q ss_pred ccHHHHHHHHhhc-cCCCCHHHHHHHH
Q 042193 714 ITAAHFEESMKYA-RRSVSDADIRKYQ 739 (784)
Q Consensus 714 v~~~~~~~al~~~-~~s~~~~~~~~~~ 739 (784)
|+.+||..|++.+ .|+.+++++++|.
T Consensus 56 i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 56 ILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp ECHHHHHHHHHTTCC------------
T ss_pred cCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 9999999999998 6889998998874
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.19 E-value=2.2e-11 Score=141.70 Aligned_cols=229 Identities=19% Similarity=0.284 Sum_probs=137.6
Q ss_pred ccCCcccccccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCC---cEEEEeccc
Q 042193 453 EVPNVSWEDIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQA---NFVSVKGPE 529 (784)
Q Consensus 453 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~---~~i~v~~~~ 529 (784)
..+...|+++.|.+.+++.+...+.. ...++|+|||||||||+|+++++.+.. ..+.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 34456788899999888777655432 246999999999999999999998742 223222111
Q ss_pred ch--hc------------------------------------------------------ccCcchHHHHHHHHHh----
Q 042193 530 LL--TM------------------------------------------------------WFGESEANVREIFDKA---- 549 (784)
Q Consensus 530 l~--~~------------------------------------------------------~~g~~~~~i~~~f~~a---- 549 (784)
.. .. ++.+.......+|...
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 10 00 0000011112222111
Q ss_pred -------------------hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC---------------
Q 042193 550 -------------------RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN--------------- 595 (784)
Q Consensus 550 -------------------~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--------------- 595 (784)
....+.++||||++.+. ..+.+.|+..|+...
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l 244 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMV 244 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGC
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC--------------HHHHHHHHHHHHcCcEEecccccccccccC
Confidence 11234599999999863 345677777776211
Q ss_pred ----CCCcEEEEEecCCC--CCCCccccCCCCcc---cccccCCC---CHHHHHHHHHHHhccC-------CCCCccCHH
Q 042193 596 ----AKKTVFIIGATNRP--DVIDPALLRPGRLD---QLIYIPLP---DEASRLQIFKACLRKS-------PISPDVDLS 656 (784)
Q Consensus 596 ----~~~~v~vi~aTn~~--~~ld~allr~gRf~---~~i~~~~p---~~~~r~~il~~~~~~~-------~~~~~~~~~ 656 (784)
-..++.||+|||+. +.++++|++ ||+ ..++|+.. ..+....+++...+.. .++ +.-+.
T Consensus 245 ~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~eAl~ 321 (604)
T 3k1j_A 245 RTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFT-KEAVE 321 (604)
T ss_dssp BCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBB-HHHHH
T ss_pred CCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCC-HHHHH
Confidence 01367899999987 679999999 986 45555432 3455566655443221 122 22245
Q ss_pred HHHHHc---CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHHHHHhhcc
Q 042193 657 ALARYT---HGF------SGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFEESMKYAR 727 (784)
Q Consensus 657 ~la~~~---~g~------sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 727 (784)
.|.+.. .|. +.+++.++++.|...|..+. ...|+.+|+.+|+.. +
T Consensus 322 ~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~-------------------------~~~I~~edv~~A~~~-~ 375 (604)
T 3k1j_A 322 EIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG-------------------------KKYVEREDVIEAVKM-A 375 (604)
T ss_dssp HHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT-------------------------CSSBCHHHHHHHHHH-T
T ss_pred HHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC-------------------------cccccHHHHHHHHHh-h
Confidence 555433 453 68999999999887764332 236999999999954 3
Q ss_pred CCCCHHHHHHHH
Q 042193 728 RSVSDADIRKYQ 739 (784)
Q Consensus 728 ~s~~~~~~~~~~ 739 (784)
..+.++.++.|-
T Consensus 376 ~~i~~~~~e~~l 387 (604)
T 3k1j_A 376 KPLEKQLADWYI 387 (604)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHh
Confidence 344444444443
No 158
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.19 E-value=2.9e-10 Score=148.53 Aligned_cols=128 Identities=20% Similarity=0.316 Sum_probs=91.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN 300 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 300 (784)
..++++.||+|||||++++.+|+.+|.+++.++|.+-+. ...++.+|..+... ++++++||++.+-+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE------ 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh------
Confidence 568999999999999999999999999999999976443 23456677666544 47999999987643
Q ss_pred hHHHHHHHHHHHHHhhcc--------------ccCCcEEEEEEcCC----CCCCCHHHHhcCCcceEEEeCCCCHHHHHH
Q 042193 301 GEVERRIVSQLLTLMDGL--------------KSRAHVVVMGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRLE 362 (784)
Q Consensus 301 ~~~~~~v~~~Ll~~ld~~--------------~~~~~vivI~atn~----~~~ld~al~r~~rf~~~i~i~~p~~~~R~~ 362 (784)
++...+..++....+.+ .-+..+.+++|.|+ ...+++++++ || +.+.+..|+.+...+
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 23333333333222221 12345567778884 3578999987 67 569999999998888
Q ss_pred HHH
Q 042193 363 VFR 365 (784)
Q Consensus 363 il~ 365 (784)
|+.
T Consensus 788 i~l 790 (2695)
T 4akg_A 788 MIL 790 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 159
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.19 E-value=1.2e-10 Score=121.13 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=89.2
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh
Q 042193 185 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSKL 261 (784)
Q Consensus 185 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---~~~~~v~~~~l~~~~ 261 (784)
+|+++.|.+..+..+.+.+.... ..+.++||+||||||||++|++++..++ .+++.++|..+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57788899998888876665321 2246899999999999999999999875 578999987653211
Q ss_pred -----cchhHHH-------HHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc---------c
Q 042193 262 -----AGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK---------S 320 (784)
Q Consensus 262 -----~g~~~~~-------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 320 (784)
.|..... ....+.. ...++|||||++.+.. .....|+..++... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCcccc
Confidence 1110000 0012222 2357999999998853 23445666665321 1
Q ss_pred CCcEEEEEEcCCC-------CCCCHHHHhcCCcceEEEeCCCCHHHHH
Q 042193 321 RAHVVVMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRL 361 (784)
Q Consensus 321 ~~~vivI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~ 361 (784)
...+.+|++||.+ ..+.+.+.. ||.. +.+..|...+|.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~ 183 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERE 183 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhh
Confidence 2356788888874 246677766 6753 345555555443
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=4.8e-10 Score=124.13 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=127.0
Q ss_pred ccccchhhhhhhhcccc-ccccCChhhhhhccc-CCCceeEE--EcCCCCChhHHHHHHHHHh---------CCcEEEEe
Q 042193 460 EDIGGLETVKRELQETV-QYPVEHPEKFEKFGL-SPSKGVLF--YGPPGCGKTLLAKAIANEC---------QANFVSVK 526 (784)
Q Consensus 460 ~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~-~~~~g~ll--~Gp~GtGKT~la~~la~~~---------~~~~i~v~ 526 (784)
+.+.|-+...+.|...+ ..... +. ..+..++| +||+|+|||++++.+++.. +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 45666666666665544 21100 10 12456888 9999999999999999875 45677777
Q ss_pred cccch------hcc---c-------CcchHH-HHHHHHHhh-hCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHH
Q 042193 527 GPELL------TMW---F-------GESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLL 588 (784)
Q Consensus 527 ~~~l~------~~~---~-------g~~~~~-i~~~f~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 588 (784)
+.... ... + +.+... ...+.+... ...|.+|||||++.+...+. .....+..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l~ 165 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTLL 165 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHHH
Confidence 53321 110 0 111111 222222222 34578999999999864211 1245666666
Q ss_pred HHhhCCCC-C--CcEEEEEecCCCC---CCC---ccccCCCCcccccccCCCCHHHHHHHHHHHhccCC---CCCccCHH
Q 042193 589 TEMDGMNA-K--KTVFIIGATNRPD---VID---PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP---ISPDVDLS 656 (784)
Q Consensus 589 ~~ld~~~~-~--~~v~vi~aTn~~~---~ld---~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~ 656 (784)
..++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+.... ...+..+.
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 66665431 2 6788888888765 344 66666 6655599999999999999987664321 12233467
Q ss_pred HHHHHcC------CCCHHHHHHHHHHHHHHHHH
Q 042193 657 ALARYTH------GFSGADITEICQRACKYAIR 683 (784)
Q Consensus 657 ~la~~~~------g~sg~di~~l~~~a~~~a~~ 683 (784)
.+++.+. | ..+.+..+++.|...|..
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 7888888 6 556778888887766643
No 161
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.15 E-value=7.8e-12 Score=117.16 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=76.4
Q ss_pred ccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHH
Q 042193 462 IGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEAN 541 (784)
Q Consensus 462 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~ 541 (784)
+.|.+...+.+.+.+... .....+++|+||||||||++|++++..+. +|+.+++.++...+
T Consensus 6 ~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp --CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred ceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 455555555555544321 12345699999999999999999999888 99999998875543
Q ss_pred HHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 542 VREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 542 i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
...+|+.+. .+++||||||.+.. ..+..|+..|+... ..++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~--------------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR--------------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH--------------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH--------------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455677665 35999999998743 24455666666432 3457788888865
No 162
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=1.6e-09 Score=116.99 Aligned_cols=174 Identities=21% Similarity=0.297 Sum_probs=116.3
Q ss_pred hhcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEe
Q 042193 179 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA-----FFFLIN 253 (784)
Q Consensus 179 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~~~v~ 253 (784)
+++.+..++++.|.+..++.+...+.. | . ..+++|+|||||||||+++++++.+.. .+..++
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDE-----------G-K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 456777899999999998888877653 1 1 124999999999999999999998743 355666
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHh------cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEE
Q 042193 254 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVM 327 (784)
Q Consensus 254 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 327 (784)
+++.. + ...++..+..... ..+.++++||+|.+.. ...+.|+..++... ....+|
T Consensus 84 ~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~i 144 (340)
T 1sxj_C 84 ASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYT--KNTRFC 144 (340)
T ss_dssp TTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTT--TTEEEE
T ss_pred Ccccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCC--CCeEEE
Confidence 54321 1 1233333332221 2368999999998842 12345666676543 345566
Q ss_pred EEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHc--CCCcccchhhhHHHHhcCC
Q 042193 328 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTK--NMKLAEDVDLERVARDTHG 388 (784)
Q Consensus 328 ~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~~~~~~~l~~la~~t~g 388 (784)
.+||.+..+.+.+++ |+. .+.+..++.++..+++...+. ++.+.+ .....++..+.|
T Consensus 145 l~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G 203 (340)
T 1sxj_C 145 VLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG 203 (340)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT
T ss_pred EEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC
Confidence 778888899999988 764 578888998888888887663 333332 234555555544
No 163
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.09 E-value=1.6e-10 Score=108.44 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=75.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcch
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE 264 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~ 264 (784)
++.|.+..++++++.+.... ..+.+|||+||||||||++|++++... +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 46788888888877665311 235679999999999999999999886 56778 998776543
Q ss_pred hHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC
Q 042193 265 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP 333 (784)
Q Consensus 265 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~ 333 (784)
......|..+. .+++||||+|.+.+ .....|+..+... ...+.+|++||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR-----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH-----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH-----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 12334455443 46999999998853 2334566666433 2345677788864
No 164
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.09 E-value=1.1e-10 Score=109.26 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=76.8
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHH
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 267 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~ 267 (784)
++.|.++.++++++.+.... ..+.+|||+||||||||++|++++...+ +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 47788888888887765321 2356799999999999999999998887 88999998765443
Q ss_pred HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC
Q 042193 268 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRP 333 (784)
Q Consensus 268 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~ 333 (784)
....|+.+. .+++||||++.+.+. ....|+..++... ...+.+|++||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344455443 469999999988432 2344555555432 3456677777753
No 165
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=4.1e-10 Score=119.05 Aligned_cols=125 Identities=11% Similarity=0.123 Sum_probs=95.4
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh------CCcEEEEecccchhcccCcchHHHHHHHHHhhhCC----CeEEEEeccc
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC------QANFVSVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELD 563 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~----p~vl~iDEid 563 (784)
...+|||||||+|||++|+++|..+ ...++.+++++- ...-..++.+.+.+...+ ..|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4579999999999999999999874 346777765420 123346788888876443 4799999999
Q ss_pred hhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 042193 564 SIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 643 (784)
Q Consensus 564 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~ 643 (784)
.+.. ...+.||..|+.. ..+.++|.+||.|+.|-|++.+ | ++.|++|+.++..++++..
T Consensus 93 ~lt~--------------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 93 RMTQ--------------QAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp GBCH--------------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHH
T ss_pred HhCH--------------HHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHH
Confidence 9743 3468899999864 3455666667778899999998 7 8999999999999988877
Q ss_pred h
Q 042193 644 L 644 (784)
Q Consensus 644 ~ 644 (784)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 6
No 166
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.07 E-value=5.5e-10 Score=118.36 Aligned_cols=145 Identities=24% Similarity=0.359 Sum_probs=90.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh---
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL--- 261 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~--- 261 (784)
++.|.+..++.+.+.+.... ..+.+|||+||||||||++|++++... +.+++.++|..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 57788888888877665421 235689999999999999999999975 4678999987653211
Q ss_pred --cch----hHH---HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCc
Q 042193 262 --AGE----SES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK---------SRAH 323 (784)
Q Consensus 262 --~g~----~~~---~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~ 323 (784)
.|. ... .....|+.+. .++|||||++.+.. .....|+..++... ....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 110 000 1112344432 46999999998853 23445666665432 1235
Q ss_pred EEEEEEcCCC-------CCCCHHHHhcCCcceEEEeCCCCHHHH
Q 042193 324 VVVMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 360 (784)
Q Consensus 324 vivI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R 360 (784)
+.+|++||.. ..+++.|.. ||. .+.+..|...+|
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR 178 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQR 178 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGG
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHh
Confidence 7888888875 134455544 553 344555554444
No 167
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.99 E-value=6.6e-09 Score=136.48 Aligned_cols=323 Identities=15% Similarity=0.233 Sum_probs=160.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEechhhhhhhcchhHHHHHHHHHHHH----------------hcCCe
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAE----------------KNAPS 282 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l-~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----------------~~~p~ 282 (784)
.+++|||+||||||||+++......+ +..++.++++.-.+ ...+...++... .....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 36789999999999998876544444 44567777654322 223333333210 12236
Q ss_pred EEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc-------cccCCcEEEEEEcCCC-----CCCCHHHHhcCCcceEE
Q 042193 283 IIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG-------LKSRAHVVVMGATNRP-----NSIDPALRRFGRFDREI 350 (784)
Q Consensus 283 il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-------~~~~~~vivI~atn~~-----~~ld~al~r~~rf~~~i 350 (784)
|+|+||++.-..+...... .-.++.+++..-.- .....++.+|+|+|+| ..+++++.| ||.. +
T Consensus 1377 VlFiDDiNmp~~D~yGtQ~--~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQR--VITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-L 1451 (3245)
T ss_dssp EEEETTTTCCCCCTTSCCH--HHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-E
T ss_pred EEEecccCCCCcccccccc--HHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-E
Confidence 8999999864443322211 12233333332111 1112467899999988 468999988 7755 8
Q ss_pred EeCCCCHHHHHHHHHHHHcCC-Ccccchh--hhHHH------------------HhcCCCcHHHHHHHHHHHHHHHHHhh
Q 042193 351 DIGVPDEVGRLEVFRIHTKNM-KLAEDVD--LERVA------------------RDTHGYVGADLAALCTEAALQCIREK 409 (784)
Q Consensus 351 ~i~~p~~~~R~~il~~~~~~~-~~~~~~~--l~~la------------------~~t~g~~~~dl~~l~~~a~~~~~~~~ 409 (784)
.++.|+.+....|+..+...+ ....++. ...++ +...-|+.+|+..+++..... ....
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~-~~~~ 1530 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA-IQTM 1530 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH-HHTS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh-cCcc
Confidence 999999999999976543321 1111110 00111 112346788888777654321 1100
Q ss_pred ccccccccchh---hHhh---hhccccc---------------chhhhhhcc--cCCcccccccccccCCcccccccchh
Q 042193 410 MDVIDLEDETI---DAEV---LNSMAVT---------------NEHFRTALE--MSNPSALRETVVEVPNVSWEDIGGLE 466 (784)
Q Consensus 410 ~~~~~~~~~~~---~~~~---~~~~~v~---------------~~d~~~al~--~~~ps~~~~~~~~~~~~~~~~i~g~~ 466 (784)
. .... ..-+ ..+. ....-+. .++|...-. ...|-.+.... .-.+..+ ..+
T Consensus 1531 ~-~~~~-~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~----~~~Y~~v-~~~ 1603 (3245)
T 3vkg_A 1531 D-GCTL-EGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWL----TKDYQPV-NRS 1603 (3245)
T ss_dssp S-CCCT-THHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSC----C----CC-CHH
T ss_pred c-cCCH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhc----cccCccC-CHH
Confidence 0 0000 0000 0000 0000011 111110000 00010000000 0012222 223
Q ss_pred hhhhhhcccccc---------------ccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 467 TVKRELQETVQY---------------PVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 467 ~~k~~l~~~i~~---------------~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
++++.+.+.+.. .+.|.-.+.++-..|..++||+|..||||++|++..|..++..++.+....-.
T Consensus 1604 ~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y 1683 (3245)
T 3vkg_A 1604 DLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNY 1683 (3245)
T ss_dssp HHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----C
T ss_pred HHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCC
Confidence 333333322211 00111122222234555699999999999999999999999988887554321
Q ss_pred hcccCcchHHHHHHHHHhh-hCCCeEEEEeccc
Q 042193 532 TMWFGESEANVREIFDKAR-QSAPCVLFFDELD 563 (784)
Q Consensus 532 ~~~~g~~~~~i~~~f~~a~-~~~p~vl~iDEid 563 (784)
+ ..+-...++.++..|. ...|.+++|+|-+
T Consensus 1684 ~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1684 K--SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp C--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred C--HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 1 2334567888998885 4567788888753
No 168
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.96 E-value=2.7e-08 Score=106.86 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=101.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 276 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 276 (784)
+..+||+||||+|||++|+++|+.+... +..+++.+- ........++.+++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHHHH
Confidence 4579999999999999999999987532 233332100 0011234566676665
Q ss_pred Hh----cCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEe
Q 042193 277 EK----NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDI 352 (784)
Q Consensus 277 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i 352 (784)
.. ..+.|++|||+|.+.. ...+.|+..++.. ...+++|.+|+.++.+.+.+++ |. ..+.+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~ 164 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RC-RLHYL 164 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEEC
T ss_pred hhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cc-eeeeC
Confidence 42 3468999999998842 2345677777653 3467777788889999999998 66 36899
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcH
Q 042193 353 GVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVG 391 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~ 391 (784)
+.|+.++..+++.... .+ ++..+..++..+.|...
T Consensus 165 ~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPG 199 (334)
T ss_dssp CCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHH
T ss_pred CCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHH
Confidence 9999999999888664 22 23345667777766543
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.89 E-value=3.8e-09 Score=102.76 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=61.0
Q ss_pred cCCCCcccccC----hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEE
Q 042193 181 LNEVGYDDVGG----VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET----GAFFFLI 252 (784)
Q Consensus 181 ~~~~~~~~i~G----~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l----~~~~~~v 252 (784)
+.+.+|+++.+ ....++.+++++ +++.+..+.+++|+||||||||||++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFV----------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHH----------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHH----------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 44456666654 333334444433 33444567899999999999999999999987 4566677
Q ss_pred echhhhhhhcchhHHH-HHHHHHHHHhcCCeEEEeehhhhh
Q 042193 253 NGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 253 ~~~~l~~~~~g~~~~~-l~~vf~~a~~~~p~il~iDEid~l 292 (784)
+..++........... ....++.. ..|.+|++||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 7777654332111100 01122222 25789999998744
No 170
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=2e-08 Score=106.07 Aligned_cols=142 Identities=11% Similarity=0.165 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCcEEEEechhhhhhhcch
Q 042193 191 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGE 264 (784)
Q Consensus 191 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l------~~~~~~v~~~~l~~~~~g~ 264 (784)
|+++.++.++..+... . ...+||+||||+|||++++++++.. ...+..+++.+ . ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 4566677777666531 1 3579999999999999999999863 33566666531 0 12
Q ss_pred hHHHHHHHHHHHHhc----CCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 265 SESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 265 ~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
.-..++.+++.+... ...|+||||+|.+.. ...+.|+..++.. ...+++|.+|+.+..+.+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCC--CCCeEEEEEECChHhChHHH
Confidence 234567777776532 246999999998842 2345677778753 34567777778888999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHHH
Q 042193 341 RRFGRFDREIDIGVPDEVGRLEVFRIHT 368 (784)
Q Consensus 341 ~r~~rf~~~i~i~~p~~~~R~~il~~~~ 368 (784)
++ | .+.+..|+.++..++++...
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 98 6 68899999998888887665
No 171
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.86 E-value=9.2e-10 Score=127.11 Aligned_cols=163 Identities=20% Similarity=0.220 Sum_probs=95.0
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE----echhhhhhh-
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLI----NGPEIMSKL- 261 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v----~~~~l~~~~- 261 (784)
..|.|++..++.+.-.+.. ..+.......+....++||+||||||||++|+++++.++...+.. ++.++....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3578888766554322111 000000111223334899999999999999999999887654332 112221111
Q ss_pred ----cchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----------cCCcEEE
Q 042193 262 ----AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----------SRAHVVV 326 (784)
Q Consensus 262 ----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viv 326 (784)
.+.....- ..+..+ ..+++||||++.+.+. ....|+..|+.-. ...++.|
T Consensus 373 ~~~~~g~~~~~~-G~l~~A---~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLEA-GALVLA---DGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEEE-CHHHHH---SSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccccC-CeeEec---CCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 11100000 112222 2469999999987532 3456667765321 1246789
Q ss_pred EEEcCCCC-------------CCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHHHc
Q 042193 327 MGATNRPN-------------SIDPALRRFGRFDR-EIDIGVPDEVGRLEVFRIHTK 369 (784)
Q Consensus 327 I~atn~~~-------------~ld~al~r~~rf~~-~i~i~~p~~~~R~~il~~~~~ 369 (784)
|+|||++. .+++++.+ ||+. .+..+.|+.+ ...|.+..+.
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 99999886 78889988 9974 4556677777 7777765554
No 172
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.84 E-value=1.8e-09 Score=112.89 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=79.5
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCc--EEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~--~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
|+.+...++|+||||||||+||.++|...+.+ |+....++.++.+....+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 55555568999999999999999999875444 55553355444444455666666777666654 999999999865
Q ss_pred hcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccc
Q 042193 568 QRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPAL 616 (784)
Q Consensus 568 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~al 616 (784)
.+... ...+...+.+.+++..|.++....++.+|.+|| |...|+++
T Consensus 197 ~~~~~--s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGN--TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc--cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43221 111223456677777777665555678888888 66667665
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.84 E-value=7.4e-08 Score=106.39 Aligned_cols=204 Identities=13% Similarity=0.143 Sum_probs=121.7
Q ss_pred ccccChHHHHHHHHHHH-HcccCChhhhhhhCCCCCceEEE--ECCCCCcHHHHHHHHHHHh---------CCcEEEEec
Q 042193 187 DDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILL--YGPPGTGKTLIARAVANET---------GAFFFLING 254 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~vLL--~GppGtGKTtla~~la~~l---------~~~~~~v~~ 254 (784)
+.+.|.+++++.+.+.+ ......+ -..+..++| +||||+|||+|++.+++.+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 67899999999988876 4211110 023567999 9999999999999999876 345677886
Q ss_pred hh------hhhhh----------cchhHHH-HHHHHHHHH-hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhh
Q 042193 255 PE------IMSKL----------AGESESN-LRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMD 316 (784)
Q Consensus 255 ~~------l~~~~----------~g~~~~~-l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 316 (784)
.. +.... .+..... +..+.+... ...|.+|+|||++.+....... ......++..+.
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHHH
Confidence 32 11110 0111111 222222222 2457899999999986532111 123444445554
Q ss_pred cccc-C--CcEEEEEEcCCCCC---CC---HHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCC---CcccchhhhHHHH
Q 042193 317 GLKS-R--AHVVVMGATNRPNS---ID---PALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNM---KLAEDVDLERVAR 384 (784)
Q Consensus 317 ~~~~-~--~~vivI~atn~~~~---ld---~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~---~~~~~~~l~~la~ 384 (784)
.... . .++.+|++++.++. ++ +.+.+ ++...+.+++++.++..+++...+... ...++..+..++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4321 2 57888888876542 23 44444 555559999999999999997654321 1122334677778
Q ss_pred hcC------CCcHHHHHHHHHHHHHHH
Q 042193 385 DTH------GYVGADLAALCTEAALQC 405 (784)
Q Consensus 385 ~t~------g~~~~dl~~l~~~a~~~~ 405 (784)
.+. |.. ..+..++..+...+
T Consensus 248 ~~~~~~~~~G~p-~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 248 VYGEDKGGDGSA-RRAIVALKMACEMA 273 (412)
T ss_dssp HHCGGGTSCCCH-HHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcH-HHHHHHHHHHHHHH
Confidence 887 653 34555666554433
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=5.8e-09 Score=98.12 Aligned_cols=101 Identities=14% Similarity=0.264 Sum_probs=64.2
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcC
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 570 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 570 (784)
...++|+||+|+|||+|++++++.. +...+.+++.++... +....|.+++|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 4569999999999999999999987 566888888876543 11234679999999875331
Q ss_pred CCCCCCCCchHHHHHHHHHHhhCCCCCCc-EEEEEecCCCCCCC--ccccCCCCcccc
Q 042193 571 ASVGDAGGAADRVLNQLLTEMDGMNAKKT-VFIIGATNRPDVID--PALLRPGRLDQL 625 (784)
Q Consensus 571 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~-v~vi~aTn~~~~ld--~allr~gRf~~~ 625 (784)
..+.+-.+++.+. .... ++||++...|+.+. +.+.+ |+..-
T Consensus 99 ---------~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g 142 (149)
T 2kjq_A 99 ---------EQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYC 142 (149)
T ss_dssp ---------HHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGS
T ss_pred ---------HHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcC
Confidence 1233333443332 2223 35554444565443 66665 66533
No 175
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.74 E-value=1.5e-07 Score=123.89 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=88.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTN 300 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 300 (784)
..|..+.||+|||||.+++.+|+.+|.+++.+||.+-+. ...+..+|.-+... .+..++||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~------ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEE------ 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCH------
Confidence 456789999999999999999999999999999976432 23456666665543 56889999987632
Q ss_pred hHHHHHHHHHHHHHhh-------------c--cccCCcEEEEEEcCC----CCCCCHHHHhcCCcceEEEeCCCCHHHHH
Q 042193 301 GEVERRIVSQLLTLMD-------------G--LKSRAHVVVMGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRL 361 (784)
Q Consensus 301 ~~~~~~v~~~Ll~~ld-------------~--~~~~~~vivI~atn~----~~~ld~al~r~~rf~~~i~i~~p~~~~R~ 361 (784)
++-..+..++..... + +.-+..+.++.|.|+ ...+++.++. +| +.+.+..|+.+.-.
T Consensus 671 -~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 -RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 122222222221111 1 222345667778884 3578999998 66 45999999998887
Q ss_pred HHHH
Q 042193 362 EVFR 365 (784)
Q Consensus 362 ~il~ 365 (784)
+|+.
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=1.8e-08 Score=94.68 Aligned_cols=101 Identities=15% Similarity=0.334 Sum_probs=64.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 296 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 296 (784)
++..++|+||+|+|||||++++++.+ +...+++++.++... .....|.++++||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 56789999999999999999999987 555788887766543 112357899999998753221
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCc-EEEEEEcCCCCCCC--HHHHhcCCcce
Q 042193 297 EKTNGEVERRIVSQLLTLMDGLKSRAH-VVVMGATNRPNSID--PALRRFGRFDR 348 (784)
Q Consensus 297 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~-vivI~atn~~~~ld--~al~r~~rf~~ 348 (784)
...|..+++....... ++++++...|..+. +.+.+ |+..
T Consensus 100 -----------~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 100 -----------QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp -----------HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred -----------HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 2334444444333333 35554444555443 66665 5543
No 177
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=86.11 Aligned_cols=76 Identities=32% Similarity=0.603 Sum_probs=67.2
Q ss_pred eCCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhccccc
Q 042193 352 IGVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVT 431 (784)
Q Consensus 352 i~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 431 (784)
-.+|+.++|.+||+.+++++++..++++..++..|+||+|+||.++|++|++.++++. ...++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 4689999999999999999999889999999999999999999999999999998763 23578
Q ss_pred chhhhhhcccCCc
Q 042193 432 NEHFRTALEMSNP 444 (784)
Q Consensus 432 ~~d~~~al~~~~p 444 (784)
.+||..++..+.|
T Consensus 71 ~~df~~Al~~v~p 83 (86)
T 2krk_A 71 QEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc
Confidence 8899988876654
No 178
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.71 E-value=7e-08 Score=112.07 Aligned_cols=53 Identities=28% Similarity=0.440 Sum_probs=43.2
Q ss_pred hcCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 180 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 180 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
.+.+..++++.|.+..++.+...+. .+.+++|+|||||||||+|++|++.++.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4555678899999998887766553 2468999999999999999999998753
No 179
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=3.2e-09 Score=114.99 Aligned_cols=119 Identities=21% Similarity=0.278 Sum_probs=80.1
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchhcccCcchHHHHHHHHHhhhCCCeEEEEeccchhhh-h
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT-Q 568 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~-~ 568 (784)
++++...++|+||||+||||+++++++..+..++.+..++-. ....++.+|+ ..++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~q------~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAID------QFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGTT------CSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhcc------hhHHHHHHHHHHHHHH
Confidence 455566699999999999999999999987766554433210 1112333332 24779999998875 3
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCC
Q 042193 569 RGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL 630 (784)
Q Consensus 569 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~ 630 (784)
|+...+ ... .....+...++|. +.|+.+||+++.+ +++++|||++..++..+
T Consensus 233 r~l~~~---~~~-~~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSG---QGI-NNLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCC---SHH-HHHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhcccc---Ccc-hHHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 322111 111 1234556667763 4578889999999 89999999998888765
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.70 E-value=9.3e-09 Score=99.98 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=61.1
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh----CCcEEEEecccchhcccCcchH-HHHHHHHHhhhCCCeEEEEeccch
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFVSVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDS 564 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~vl~iDEid~ 564 (784)
......+++|+||||||||||++++++.+ +..++.++..++...+...... ....+++.. ..|.+++|||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 33445679999999999999999999976 5566777777765433211000 000122222 2467999999985
Q ss_pred hhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 565 IATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 565 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
... .......+..++.... .. +..+|.|||.+
T Consensus 112 ~~~---------~~~~~~~l~~ll~~~~---~~-~~~ii~tsn~~ 143 (180)
T 3ec2_A 112 ERL---------SDWQRELISYIITYRY---NN-LKSTIITTNYS 143 (180)
T ss_dssp SCC---------CHHHHHHHHHHHHHHH---HT-TCEEEEECCCC
T ss_pred CcC---------CHHHHHHHHHHHHHHH---Hc-CCCEEEEcCCC
Confidence 311 1223344445544432 12 23456677764
No 181
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.65 E-value=3e-08 Score=81.99 Aligned_cols=73 Identities=33% Similarity=0.640 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccc
Q 042193 353 GVPDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTN 432 (784)
Q Consensus 353 ~~p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 432 (784)
|.|+.++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++. ...++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 589999999999999999998889999999999999999999999999999998763 234778
Q ss_pred hhhhhhcccC
Q 042193 433 EHFRTALEMS 442 (784)
Q Consensus 433 ~d~~~al~~~ 442 (784)
+||..++..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 182
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.62 E-value=1.9e-08 Score=105.11 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=69.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcC
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
|+.++..++|+||||||||+|+..++...+.. ++.....+..+.+....+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45667778999999999999999999865433 44442233233333444555555666655543 999999999865
Q ss_pred CCCCC--chHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHH
Q 042193 295 KREKT--NGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPAL 340 (784)
Q Consensus 295 ~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al 340 (784)
..... .+.. .+...+++..+..+....++.+|.++| +...++++
T Consensus 197 ~~~~~s~~G~v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGI-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43321 1111 123344444454444444567777777 44455544
No 183
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.60 E-value=1e-06 Score=100.44 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=49.6
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchh----------------------cccC------cc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLT----------------------MWFG------ES 538 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~----------------------~~~g------~~ 538 (784)
++.+..-++|.||||+|||||++.++... +.+.+.+...+-.. .+.. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45555559999999999999999999864 33445554432110 0000 12
Q ss_pred hHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 539 EANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 539 ~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
....+.+...+....|.++++|=+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 345666777777788999999955544
No 184
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.56 E-value=6.5e-08 Score=81.83 Aligned_cols=74 Identities=31% Similarity=0.502 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhh
Q 042193 356 DEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHF 435 (784)
Q Consensus 356 ~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 435 (784)
+.++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 5678999999999999999999999999999999999999999999999987632 24788899
Q ss_pred hhhcccCCccc
Q 042193 436 RTALEMSNPSA 446 (784)
Q Consensus 436 ~~al~~~~ps~ 446 (784)
..|+..+.++.
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99998876654
No 185
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.54 E-value=2.2e-07 Score=101.43 Aligned_cols=208 Identities=15% Similarity=0.136 Sum_probs=116.2
Q ss_pred ccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHH-HHHhCCcEEEEec--c---cchhcc-
Q 042193 462 IGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAI-ANECQANFVSVKG--P---ELLTMW- 534 (784)
Q Consensus 462 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~l-a~~~~~~~i~v~~--~---~l~~~~- 534 (784)
|.|++.+|+.|.-.+...... .....++||.|+||| ||++|+++ +..+.... .+.+ + .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 567788877775544332110 122336999999999 99999999 76654332 2221 1 111110
Q ss_pred --cCcchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-------CCCcEEEEEe
Q 042193 535 --FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-------AKKTVFIIGA 605 (784)
Q Consensus 535 --~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-------~~~~v~vi~a 605 (784)
.| ..-.-+. +..|... ++|+|||+.+- ...+..|+..|+.-. -..++.||||
T Consensus 285 ~~tG-~~~~~G~-l~LAdgG---vl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA 345 (506)
T 3f8t_A 285 EDRG-WALRAGA-AVLADGG---ILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAA 345 (506)
T ss_dssp ESSS-EEEEECH-HHHTTTS---EEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEE
T ss_pred cCCC-cccCCCe-eEEcCCC---eeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEE
Confidence 01 1111112 2234433 99999998753 456778888877321 1246889999
Q ss_pred cCCCC-----------CCCccccCCCCccccc-ccCCCCHHHHH---------HHHHH---Hhc--c-CC-CCCccCHHH
Q 042193 606 TNRPD-----------VIDPALLRPGRLDQLI-YIPLPDEASRL---------QIFKA---CLR--K-SP-ISPDVDLSA 657 (784)
Q Consensus 606 Tn~~~-----------~ld~allr~gRf~~~i-~~~~p~~~~r~---------~il~~---~~~--~-~~-~~~~~~~~~ 657 (784)
+|..+ .|.++++. |||..+ ..+.|+.+... +.++. +.+ . .+ ++++. .+.
T Consensus 346 ~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea-~~y 422 (506)
T 3f8t_A 346 INPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEA-RKR 422 (506)
T ss_dssp ECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHH-HHH
T ss_pred eCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHH-HHH
Confidence 99875 67889998 998543 45566543311 11111 222 1 11 22111 111
Q ss_pred HHH-----------------HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccCcccccHHHHH
Q 042193 658 LAR-----------------YTHGFSGADITEICQRACKYAIRENIEKDIERERSGKRKRENPEAMEVDDVDEITAAHFE 720 (784)
Q Consensus 658 la~-----------------~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 720 (784)
+.+ ..-|.|.+.+..+++.|-..|.-+. ...|+.+|+.
T Consensus 423 I~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g-------------------------R~~V~~eDV~ 477 (506)
T 3f8t_A 423 LEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL-------------------------SDDVEPEDVD 477 (506)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT-------------------------CSEECHHHHH
T ss_pred HHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC-------------------------cCCCCHHHHH
Confidence 110 1346788888888887776665543 2368999999
Q ss_pred HHHhhc
Q 042193 721 ESMKYA 726 (784)
Q Consensus 721 ~al~~~ 726 (784)
+|+.-+
T Consensus 478 ~Ai~L~ 483 (506)
T 3f8t_A 478 IAAELV 483 (506)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998755
No 186
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.49 E-value=3.1e-06 Score=91.09 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=98.7
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch-----h---------------------------ccc-------
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL-----T---------------------------MWF------- 535 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~-----~---------------------------~~~------- 535 (784)
..++++||+|+|||+|++.+++..+..++.+++.... + ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 3689999999999999999999887777777765320 0 000
Q ss_pred C-c------chHHHHHHHHHhhhC--CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEec
Q 042193 536 G-E------SEANVREIFDKARQS--APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 606 (784)
Q Consensus 536 g-~------~~~~i~~~f~~a~~~--~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT 606 (784)
+ . ....+..+++..... .|.+|||||++.+.... .......+..+... . .++.+|.|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-------~~~~~~~l~~~~~~---~---~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-------GVNLLPALAYAYDN---L---KRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-------TCCCHHHHHHHHHH---C---TTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-------chhHHHHHHHHHHc---C---CCeEEEEEc
Confidence 0 0 012234444444332 38899999999986410 01122333433332 1 244455555
Q ss_pred CCCCC-------CC--ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Q 042193 607 NRPDV-------ID--PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEICQR 676 (784)
Q Consensus 607 n~~~~-------ld--~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~ 676 (784)
+.... .+ ..+ .||+...+.+++.+.++..+++...+...+...+. ...+.+.+.|+.. -+..++..
T Consensus 178 ~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHH-HHHHHHHH
T ss_pred CchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHH-HHHHHHHH
Confidence 43211 11 122 24666789999999999999998876543333332 4788888888654 45555543
No 187
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.49 E-value=1.3e-07 Score=107.53 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
.+++.+.|+||+|+|||||+++|++.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356679999999999999999999865
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.48 E-value=1.4e-07 Score=93.29 Aligned_cols=69 Identities=33% Similarity=0.415 Sum_probs=47.4
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcccCcc-hHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
.+++|+||||||||++|++++..+ +.+++.++.+++...+.... ......+++.... +.+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 679999999999999999999987 56788888877654332110 0012233333333 259999999764
No 189
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.47 E-value=1.9e-07 Score=102.23 Aligned_cols=166 Identities=22% Similarity=0.338 Sum_probs=96.9
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchhc-------------ccCcchHHHHHHHHHhhhCCCeEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVLF 558 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~~-------------~~g~~~~~i~~~f~~a~~~~p~vl~ 558 (784)
..++++|++|||||++|+++...+. .+|+.+++..+... |.|.... ..-.|+.|.. .+||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELADG---GTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEE
Confidence 4489999999999999999998864 68999998875321 1122111 1235666655 3999
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----C----CCcEEEEEecCCCCCCCccccCCCCccc-----
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDVIDPALLRPGRLDQ----- 624 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~~----- 624 (784)
||||+.+. ..++..||+.|+... . ..++-||+|||+. +... .+.|+|..
T Consensus 237 ldei~~l~--------------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~~~-~~~g~fr~dl~~r 299 (387)
T 1ny5_A 237 LDEIGELS--------------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN--IKEL-VKEGKFREDLYYR 299 (387)
T ss_dssp EESGGGCC--------------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC--HHHH-HHTTSSCHHHHHH
T ss_pred EcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC--HHHH-HHcCCccHHHHHh
Confidence 99999864 346677777776421 1 1257799999973 1111 12244431
Q ss_pred --ccccCCCCH----HHHHHHHHHHh----ccCCCC-CccC---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 042193 625 --LIYIPLPDE----ASRLQIFKACL----RKSPIS-PDVD---LSALARYTHGFSGADITEICQRACKYA 681 (784)
Q Consensus 625 --~i~~~~p~~----~~r~~il~~~~----~~~~~~-~~~~---~~~la~~~~g~sg~di~~l~~~a~~~a 681 (784)
.+.+..|.. ++...+++.++ ++.+.. ...+ +..|..+.--.+-++|+++++.|+..+
T Consensus 300 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 300 LGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred hcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 223334443 33334444443 233222 1122 444444432234579999998887654
No 190
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.44 E-value=1.3e-07 Score=79.13 Aligned_cols=74 Identities=27% Similarity=0.437 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhh
Q 042193 356 DEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHF 435 (784)
Q Consensus 356 ~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 435 (784)
+.++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++. ...++.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 678999999999999998889999999999999999999999999999877543 235788999
Q ss_pred hhhcccCCccc
Q 042193 436 RTALEMSNPSA 446 (784)
Q Consensus 436 ~~al~~~~ps~ 446 (784)
..++..+.|+.
T Consensus 65 ~~Al~~~~ps~ 75 (83)
T 3aji_B 65 EKAYKTVIKKD 75 (83)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHccCc
Confidence 99999887764
No 191
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.43 E-value=1e-05 Score=86.84 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=104.8
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-------- 258 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~-------- 258 (784)
..+.|-+++++.|.+.+.. +..++|+||+|+|||+|++.+++..+ .+++++....
T Consensus 12 ~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITR 74 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCH
T ss_pred HhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCH
Confidence 4578999999988876642 25899999999999999999999875 6667664331
Q ss_pred ----h---hhcc-------------------------hhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHH
Q 042193 259 ----S---KLAG-------------------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERR 306 (784)
Q Consensus 259 ----~---~~~g-------------------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 306 (784)
. ...+ .....+..+.+.+....|.+|+|||++.+........ ..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~----~~ 150 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG----KE 150 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTT----HH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccch----hh
Confidence 0 0000 0111122222222222488999999998864110001 12
Q ss_pred HHHHHHHHhhccccCCcEEEEEEcCCCCCCCHH-------HHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCc-ccchh
Q 042193 307 IVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKL-AEDVD 378 (784)
Q Consensus 307 v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~a-------l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~-~~~~~ 378 (784)
+...|...++.. .++.+|.++.....+... -.-.+|+...+.+.+.+.++-.+++...+..... ..+..
T Consensus 151 ~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~ 227 (350)
T 2qen_A 151 LLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred HHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 333343344332 244444443321111110 0012466678999999999999998876543322 12345
Q ss_pred hhHHHHhcCCCcH
Q 042193 379 LERVARDTHGYVG 391 (784)
Q Consensus 379 l~~la~~t~g~~~ 391 (784)
...+...+.|+..
T Consensus 228 ~~~i~~~tgG~P~ 240 (350)
T 2qen_A 228 IEEAVELLDGIPG 240 (350)
T ss_dssp HHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCHH
Confidence 6778888888764
No 192
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.42 E-value=1.8e-07 Score=92.08 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=76.8
Q ss_pred eeEEEcCCCCChhHHHHHHHHHh--------C-CcEEEEecccchhccc----------CcchH--HHHHHHHHh--hhC
Q 042193 496 GVLFYGPPGCGKTLLAKAIANEC--------Q-ANFVSVKGPELLTMWF----------GESEA--NVREIFDKA--RQS 552 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~--------~-~~~i~v~~~~l~~~~~----------g~~~~--~i~~~f~~a--~~~ 552 (784)
-.|++|+||||||++|..++... + .+++..+.+++...+. ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 36899999999999998875443 3 4555555555543222 11110 112233321 223
Q ss_pred CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCCCC
Q 042193 553 APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPLPD 632 (784)
Q Consensus 553 ~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~ 632 (784)
..++|||||++.+.+.|... ... . .++..+.... ...+-||.+|+.++.||.++.+ |++..+++++|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~----~e~-~----rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAG----SKI-P----ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTT----CCC-C----HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCcccc----chh-H----HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 45799999999997655321 111 1 2444554332 3344566677779999999887 999999998764
Q ss_pred H
Q 042193 633 E 633 (784)
Q Consensus 633 ~ 633 (784)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 4
No 193
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.6e-07 Score=103.55 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.++..+.|.||+|+|||||++.|++.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4568889999999999999999999865
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=5.1e-07 Score=89.25 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=47.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcchhH-HHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
+.+++|+||||||||++++++++.+ +..++.++++++......... ..+...+..... +.+|+|||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3789999999999999999999987 566788888776543321110 011222333322 3599999996643
No 195
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=9.9e-06 Score=87.08 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=103.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh-------
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM------- 258 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~------- 258 (784)
...+.|-+++++.|.+ +.. ..++|+||+|+|||+|++.+++.++...+++++....
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred HHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 3457888888887776 421 3899999999999999999999987777778765320
Q ss_pred hhhcch---------------------------------------hHHHHHHHHHHHHhc--CCeEEEeehhhhhcCCCC
Q 042193 259 SKLAGE---------------------------------------SESNLRKAFEEAEKN--APSIIFIDEIDSIAPKRE 297 (784)
Q Consensus 259 ~~~~g~---------------------------------------~~~~l~~vf~~a~~~--~p~il~iDEid~l~~~~~ 297 (784)
...... ....+..+++..... .|.+|+|||++.+.....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 000000 001233444444332 388999999998865211
Q ss_pred CCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHH-------HHhcCCcceEEEeCCCCHHHHHHHHHHHHcC
Q 042193 298 KTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVFRIHTKN 370 (784)
Q Consensus 298 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~a-------l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 370 (784)
.. +...|..+.+.. .++.+|.+++....+... -...+|+...+.+.+.+.++..+++...+..
T Consensus 155 ~~-------~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~ 224 (357)
T 2fna_A 155 VN-------LLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE 224 (357)
T ss_dssp CC-------CHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hh-------HHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH
Confidence 11 112222223321 244444444432111111 0012456678999999999999998866532
Q ss_pred CCcccchhhhHHHHhcCCCcH
Q 042193 371 MKLAEDVDLERVARDTHGYVG 391 (784)
Q Consensus 371 ~~~~~~~~l~~la~~t~g~~~ 391 (784)
.....+. ...+...+.|+..
T Consensus 225 ~~~~~~~-~~~i~~~t~G~P~ 244 (357)
T 2fna_A 225 ADIDFKD-YEVVYEKIGGIPG 244 (357)
T ss_dssp HTCCCCC-HHHHHHHHCSCHH
T ss_pred cCCCCCc-HHHHHHHhCCCHH
Confidence 2222121 2778888988764
No 196
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.33 E-value=8.4e-06 Score=87.44 Aligned_cols=166 Identities=18% Similarity=0.265 Sum_probs=95.7
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch------------h---cccCc---------------------c
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL------------T---MWFGE---------------------S 538 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~------------~---~~~g~---------------------~ 538 (784)
..++++||+|+|||+|++.+++..+ .+.+++.... . ..++. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 4699999999999999999999875 5666543321 0 00000 0
Q ss_pred hHHHHHHH----HHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC---C-
Q 042193 539 EANVREIF----DKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP---D- 610 (784)
Q Consensus 539 ~~~i~~~f----~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~---~- 610 (784)
...+..++ +.+....|.+|||||++.+..... .....++..|-..++.. .++.+|.|++.. .
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-------~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-------RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-------TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-------cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHH
Confidence 01122222 223222389999999999864210 01123344333334432 244444444332 1
Q ss_pred -----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHH
Q 042193 611 -----VIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEICQ 675 (784)
Q Consensus 611 -----~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 675 (784)
.....+. ||+...+.+++.+.++-.+++...+...+.. .+..+..+.+.+.|+.. -+..++.
T Consensus 180 ~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 180 FLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp HHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred HHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 1112222 4666788999999999999998877654433 23346778888888654 4555554
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.32 E-value=2.4e-07 Score=98.16 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=46.4
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhC----CcEEEEecccchhcccCcc-hHHHHHHHHHhhhCCCeEEEEeccchh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFVSVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 565 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~----~~~i~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l 565 (784)
..+++|+||||||||+||+++|..+. .+++.++.+++...+.... .......+..... +.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 56899999999999999999998654 6788888887765432211 1111122222222 359999999754
No 198
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.31 E-value=1.9e-06 Score=93.50 Aligned_cols=166 Identities=22% Similarity=0.302 Sum_probs=96.5
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCC--cEEEEecccchhc-------------ccCcchHHHHHHHHHhhhCCCeEEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQA--NFVSVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVLFF 559 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~~~~l~~~-------------~~g~~~~~i~~~f~~a~~~~p~vl~i 559 (784)
..++++|++||||+++|+++...++. +|+.+++..+-.. |.|.... -.-.|+.|... .|||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a~~g---tlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELADQG---TLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHTTTS---EEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhcCCC---eEEe
Confidence 34999999999999999999988754 3999999865321 1111111 11245666543 8999
Q ss_pred eccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC-----CC----CcEEEEEecCCC-------CCCCccccCCCCcc
Q 042193 560 DELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN-----AK----KTVFIIGATNRP-------DVIDPALLRPGRLD 623 (784)
Q Consensus 560 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-----~~----~~v~vi~aTn~~-------~~ld~allr~gRf~ 623 (784)
|||+.+. ..++..||..|+... .. -++-+|+|||.. ..+.+.|.. |+.
T Consensus 229 dei~~l~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~ 292 (368)
T 3dzd_A 229 DEVGELD--------------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLS 292 (368)
T ss_dssp ETGGGSC--------------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred cChhhCC--------------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC
Confidence 9999874 346677888776421 11 246689999863 122223332 332
Q ss_pred -cccccCCCCH--HHHHHHHHHHhc----cCCCC-CccC---HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 042193 624 -QLIYIPLPDE--ASRLQIFKACLR----KSPIS-PDVD---LSALARYTHGFSGADITEICQRACKY 680 (784)
Q Consensus 624 -~~i~~~~p~~--~~r~~il~~~~~----~~~~~-~~~~---~~~la~~~~g~sg~di~~l~~~a~~~ 680 (784)
..|++|+... ++...+++.+++ ..+.. ...+ +..|..+.---+-+++.++++.|+..
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2355665543 444445444442 22221 1122 44444444223458888888887754
No 199
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=98.26 E-value=1.8e-05 Score=76.73 Aligned_cols=150 Identities=12% Similarity=0.073 Sum_probs=100.0
Q ss_pred eEEEecccCC---CCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCCeee
Q 042193 8 RLVIDEAIND---DNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGDLVS 84 (784)
Q Consensus 8 ~l~v~~~~~~---~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~v~ 84 (784)
.|+|.++..+ --+++++||++.. .+-+|+|. ...|+.+.+++.+++|+|.++..+|+|+++++|+.|.
T Consensus 7 ~l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~----~~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~ 77 (189)
T 1cr5_A 7 HLKVSNCPNNSYALANVAAVSPNDFP-----NNIYIIID----NLFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQ 77 (189)
T ss_dssp EEEEEECCCHHHHTTTEEEECTTTSC-----SSCEEEET----TTEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEE
T ss_pred EEEEEeCCChhhhhcceEEECHHHcC-----CCceEEEc----CcEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEE
Confidence 4788888664 6778999999986 23477773 2478889999999999999999999999999999999
Q ss_pred EEecCC------CCCCcEEEec--ccc--cc-ccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecC
Q 042193 85 VHACPD------VKYGRRVHIL--PID--DT-IEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDP 153 (784)
Q Consensus 85 v~~~~~------~~~~~~v~~~--~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p 153 (784)
|+++.. ..+...+++. -.. .. ...+..+.+...+++.|.. .++.+|+.+.+...+..+.+.|.++..
T Consensus 78 V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~--Qift~gQ~l~f~~~g~~l~l~V~~i~~ 155 (189)
T 1cr5_A 78 AKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYES--QIFSPTQYLIMEFQGHFFDLKIRNVQA 155 (189)
T ss_dssp EEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTT--CEECTTCEEEEEETTEEEEEEEEEEEE
T ss_pred EEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcC--CCCCCCCEEEEEECCcEEEEEEEEEEE
Confidence 999831 1223334432 111 11 1223333333344444543 468899998876655555667766421
Q ss_pred ----------------CceEEeCCCceEEEc
Q 042193 154 ----------------GEYCIVAPDTEIFCE 168 (784)
Q Consensus 154 ----------------~~~~~~~~~t~i~~~ 168 (784)
...++++++|.|.+.
T Consensus 156 ~d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 186 (189)
T 1cr5_A 156 IDLGDIEPTSAVATGIETKGILTKQTQINFF 186 (189)
T ss_dssp ECTTSSSCSSCCBCSTTCCEECCTTCEEEEE
T ss_pred eccccccccCcCCCCccceEEEcCCcEEEEE
Confidence 236788888877654
No 200
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=98.25 E-value=1.5e-05 Score=78.80 Aligned_cols=154 Identities=10% Similarity=0.092 Sum_probs=103.4
Q ss_pred EEEecccCC---CCcEEEECHHhHhhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCCeeeE
Q 042193 9 LVIDEAIND---DNSVITMHPNTMDKLQFFQGDTVLVKGKKRKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGDLVSV 85 (784)
Q Consensus 9 l~v~~~~~~---~~~~v~l~~~~m~~Lgl~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~v~v 85 (784)
++|.++..+ --++|++||++.. .+.+|.+..+.....|+.+.+++.+++|+|.++..+|+|+++.+||.|.|
T Consensus 10 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~~~~~~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~V 84 (211)
T 1qcs_A 10 MQAARCPTDELSLSNCAVVSEKDYQ-----SGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEV 84 (211)
T ss_dssp EEEEECSCHHHHHHTCEEECTTTCC-----TTCEEEEEEETTEEEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEecCCChhhhhcceEEECHHHcC-----CCceEEEEecCCCeEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEEE
Confidence 778777664 5568999999985 45578884322246788999999999999999999999999999999999
Q ss_pred EecCCC---CCCcEEEec--ccc--cc-ccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEec-----
Q 042193 86 HACPDV---KYGRRVHIL--PID--DT-IEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETD----- 152 (784)
Q Consensus 86 ~~~~~~---~~~~~v~~~--~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~----- 152 (784)
+++... .+...+++. ... .. ...+..+.+...+++.|.. .++.+|+.+.+...+..+.+.|.+++
T Consensus 85 ~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~--Qift~gQ~l~f~~~g~~l~l~V~~v~~~d~~ 162 (211)
T 1qcs_A 85 ALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNN--QAFSVGQQLVFSFNDKLFGLLVKDIEAMDPS 162 (211)
T ss_dssp EEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTT--CEEETTCEEEEEETTEEEEEEEEEEEECCCC
T ss_pred EEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcC--CCCCCCCEEEEEECCcEEEEEEeEEEEeccc
Confidence 998421 123334432 121 11 1223333333344444443 46889999887665555666776631
Q ss_pred ------------CCceEEeCCCceEEEcC
Q 042193 153 ------------PGEYCIVAPDTEIFCEG 169 (784)
Q Consensus 153 ------------p~~~~~~~~~t~i~~~~ 169 (784)
+...++++++|.|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~GiL~~~T~i~F~k 191 (211)
T 1qcs_A 163 ILKGEPASGKRQKIEVGLVVGNSQVAFEK 191 (211)
T ss_dssp TTC-------CCBCSEEECCTTCEEEEEE
T ss_pred ccccCcccccCCCcceeEEcCCcEEEEEE
Confidence 12468899999886654
No 201
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.24 E-value=1.2e-06 Score=86.28 Aligned_cols=125 Identities=19% Similarity=0.269 Sum_probs=74.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh--------C-CcEEEEechhhhhhhc----------ch-----hHHHHHHHHHHHH
Q 042193 222 KGILLYGPPGTGKTLIARAVANET--------G-AFFFLINGPEIMSKLA----------GE-----SESNLRKAFEEAE 277 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l--------~-~~~~~v~~~~l~~~~~----------g~-----~~~~l~~vf~~a~ 277 (784)
.-+|++|+||||||++|..++... + .+++..+..++..... .. ....+...+.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 468999999999999988765432 3 4444555554432111 00 11122222111 2
Q ss_pred hcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCC
Q 042193 278 KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPD 356 (784)
Q Consensus 278 ~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~ 356 (784)
....++|+|||++.+.+.+....... .++..+.... +..+-+|.+++.+..++..++. |+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~------rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIP------ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCC------HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchhH------HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 34467999999999976553221111 2344444332 2345556677789999999987 898888877654
No 202
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.22 E-value=1.7e-06 Score=98.66 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+++.+.|+||+|+|||||+++|++.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 203
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.21 E-value=2.2e-07 Score=100.65 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=76.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCeEEEeehhhhhcC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
++++.++..++|+||||||||||+++|++.++..++.++.++- .....++.+| ...++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3578899999999999999999999999998776554433221 0111223233 234679999998876
Q ss_pred -CCCCCc-hHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCC
Q 042193 295 -KREKTN-GEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGV 354 (784)
Q Consensus 295 -~~~~~~-~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~ 354 (784)
.+.... .... ....+...+++ .+.|+.++|+++.+ +++.++++++..+....
T Consensus 231 ~~r~l~~~~~~~--~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLPSGQGIN--NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCCCCSHHH--HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhccccCcch--HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 222111 1110 11334444554 24567789999999 77888888877655433
No 204
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.20 E-value=4.8e-07 Score=108.20 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=31.3
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhCC--cEEEEe
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFVSVK 526 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~--~~i~v~ 526 (784)
.++.+++....| +.|.||+|+|||||++.|++.... +-+.++
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 455556655555 899999999999999999998642 344444
No 205
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.19 E-value=1.8e-06 Score=99.43 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.++..+.|+||+|+|||||+++|++.+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5678889999999999999999999865
No 206
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=98.18 E-value=8.2e-06 Score=67.08 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=58.0
Q ss_pred CCcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCceEEeCCCceEEEcC
Q 042193 93 YGRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGEYCIVAPDTEIFCEG 169 (784)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~ 169 (784)
.|++|+|+|.. +.. +.+ .+..||+++|. .|||.+||.|.+...++.+.|+|++++|. +++++++|.|.+..
T Consensus 11 ~A~kVvLAP~~-~i~-~~~-~~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 11 IMSELKLKPLP-KVE-LPP-DFVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCEEEEEESS-SCC-CCH-HHHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred EEEEEEEcCCC-cee-cCc-cHHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 58899999985 222 333 34679999997 48999999999875557899999999999 99999999998753
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=1.8e-05 Score=76.41 Aligned_cols=26 Identities=31% Similarity=0.632 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCc
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAF 248 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~ 248 (784)
.+.|+||||||||||++.|++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999998643
No 208
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.12 E-value=9.5e-07 Score=73.60 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCcccchhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhHhhhhcccccchhhhh
Q 042193 358 VGRLEVFRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFRT 437 (784)
Q Consensus 358 ~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 437 (784)
++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++.. ..++.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 36899999999999988899999999999999999999999999999987632 3478889999
Q ss_pred hcccCC
Q 042193 438 ALEMSN 443 (784)
Q Consensus 438 al~~~~ 443 (784)
++..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 888763
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.12 E-value=7.4e-06 Score=86.58 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=46.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEechhhhhhhcchh-HHHHHHHHHHHHhcCCeEEEeehhhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSI 292 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~----~~~~~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l 292 (784)
+.+++|+||||||||+||++++..+. ..++.++++++........ ...+...+.... .+.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 57899999999999999999998764 6677888877665432211 111122222222 3469999999654
No 210
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.10 E-value=1.9e-06 Score=83.88 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=27.1
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcE
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQANF 522 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 522 (784)
+++..++++||||||||||++|.++|+.+....
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 344456799999999999999999999986543
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.04 E-value=4.4e-06 Score=81.33 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcE
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETGAFF 249 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~~~~ 249 (784)
++..+++||+||||||||++|.++++.+....
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 44556899999999999999999999986543
No 212
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.01 E-value=1.1e-05 Score=94.76 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=23.0
Q ss_pred hhhcccCCCce--eEEEcCCCCChhHHHHHHH
Q 042193 486 FEKFGLSPSKG--VLFYGPPGCGKTLLAKAIA 515 (784)
Q Consensus 486 ~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la 515 (784)
++.+++..+.| +.|.||+|+|||||++++.
T Consensus 338 L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 44455555555 8999999999999997654
No 213
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.01 E-value=2.7e-05 Score=85.07 Aligned_cols=122 Identities=24% Similarity=0.333 Sum_probs=74.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh--
Q 042193 187 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSKL-- 261 (784)
Q Consensus 187 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~---~~~~~v~~~~l~~~~-- 261 (784)
..+.|....++++.+.+..- ......|+|+|++|||||++|+++....+ .+++.+||..+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45666666666666555431 12345689999999999999999988754 679999997643211
Q ss_pred ---cc----hhHH---HHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----c----CC
Q 042193 262 ---AG----ESES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----S----RA 322 (784)
Q Consensus 262 ---~g----~~~~---~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~ 322 (784)
.| .... .....|+.+. ..+||+|||+.+.. .+...|+..++.-. . ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeec
Confidence 01 0000 0112344433 35999999998852 23455666654311 1 13
Q ss_pred cEEEEEEcCCC
Q 042193 323 HVVVMGATNRP 333 (784)
Q Consensus 323 ~vivI~atn~~ 333 (784)
.+.+|++||..
T Consensus 272 ~~rii~at~~~ 282 (387)
T 1ny5_A 272 NVRILAATNRN 282 (387)
T ss_dssp CCEEEEEESSC
T ss_pred cEEEEEeCCCC
Confidence 56788888863
No 214
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.99 E-value=2.2e-05 Score=75.75 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCc
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQAN 521 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~ 521 (784)
+.|.||||+|||||++.+++..+..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999987643
No 215
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.96 E-value=5e-06 Score=85.82 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4456788899999999999999999998763
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.95 E-value=1.5e-05 Score=80.78 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=51.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH--h-------CCcEEEEechhh------hh--hhcc---------------h
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANE--T-------GAFFFLINGPEI------MS--KLAG---------------E 264 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~--l-------~~~~~~v~~~~l------~~--~~~g---------------~ 264 (784)
|+.++..++|+||||+|||||++.++.. + +...+++++.+. .. ...+ .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5778889999999999999999999985 3 345677765431 00 0000 0
Q ss_pred -hH---HHHHHHHHHHHhcCCeEEEeehhhhhcCC
Q 042193 265 -SE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 265 -~~---~~l~~vf~~a~~~~p~il~iDEid~l~~~ 295 (784)
.. ..+..+.+......|.+++|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 01 11222334444568999999999888754
No 217
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.92 E-value=1.4e-05 Score=86.12 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4557788899999999999999999999764
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.91 E-value=5.4e-06 Score=85.85 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.++..+.|.||+|||||||+++|++.+..
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 44567888999999999999999999987643
No 219
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00021 Score=68.88 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=101.5
Q ss_pred cEEEECHHhHhhcC---CCCCCEEEEeeCC-CceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCCeeeEEecCCCCCCc
Q 042193 20 SVITMHPNTMDKLQ---FFQGDTVLVKGKK-RKDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGDLVSVHACPDVKYGR 95 (784)
Q Consensus 20 ~~v~l~~~~m~~Lg---l~~gd~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~v~v~~~~~~~~~~ 95 (784)
+.|.|.|++|.+|- +.--=.-+|+... .+.+.|-|.. -.-+.|.|.++.-++++++++.|+.|+|+.+ .+|.++
T Consensus 46 dKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~~-~LPkgt 123 (208)
T 1zc1_A 46 GKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISST-DVPLGQ 123 (208)
T ss_dssp SEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEEE-ECCCCS
T ss_pred CeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEEe-EcCCCC
Confidence 47889999998775 3333355666543 3456666653 3357799999999999999999999999985 699999
Q ss_pred EEEecccccccccc--chhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCc----eEEeCCCceEEE
Q 042193 96 RVHILPIDDTIEGV--TGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGE----YCIVAPDTEIFC 167 (784)
Q Consensus 96 ~v~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~----~~~~~~~t~i~~ 167 (784)
.|.+.|.+..-..+ ...++...|+. .-.+.+||+|.+..+.+...|.|.+++|.. .|++..+-.+.+
T Consensus 124 ~vklqP~~~~Fldi~npKavLE~~LRn-----fstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf 196 (208)
T 1zc1_A 124 FVKLEPQSVDFLDISDPKAVLENVLRN-----FSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDF 196 (208)
T ss_dssp EEEEECCHHHHHTSSCHHHHHHHHHHH-----CSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEE
T ss_pred EEEEeECccccccccCHHHHHHHHhhc-----CccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEe
Confidence 99999965421122 12344445543 345899999999988888899999999984 566655544443
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=3.6e-05 Score=77.28 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=29.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLIN 253 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~ 253 (784)
|+.++..++|+||||+|||||++.++..+ +...+.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56778889999999999999999999764 34455544
No 221
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.88 E-value=4.5e-05 Score=82.66 Aligned_cols=121 Identities=25% Similarity=0.436 Sum_probs=72.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhhh----
Q 042193 188 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKL---- 261 (784)
Q Consensus 188 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~~--~~~v~~~~l~~~~---- 261 (784)
.+.|....+.++.+.+.... .....++++|++||||+++|+++....+.. ++.+||..+....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46666666666655543210 123469999999999999999999876543 8999997643211
Q ss_pred -----cchhH---HHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccc-----c----CCcE
Q 042193 262 -----AGESE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLK-----S----RAHV 324 (784)
Q Consensus 262 -----~g~~~---~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v 324 (784)
.|... ..-...|+.+. ...||+|||+.+.. .....|+..++.-. . ...+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 00000 00012344443 35899999998843 24455666664311 1 1246
Q ss_pred EEEEEcCCC
Q 042193 325 VVMGATNRP 333 (784)
Q Consensus 325 ivI~atn~~ 333 (784)
-+|++||..
T Consensus 265 rii~at~~~ 273 (368)
T 3dzd_A 265 RVISATNKN 273 (368)
T ss_dssp EEEEEESSC
T ss_pred EEEEecCCC
Confidence 688888853
No 222
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.87 E-value=1.8e-05 Score=79.53 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=26.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
++.++..+.|+||||||||||++.+++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999999854
No 223
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.86 E-value=2.4e-05 Score=83.72 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4567788899999999999999999999764
No 224
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=0.00026 Score=67.31 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=101.2
Q ss_pred CCcEEEECHHhHhhcC---CCCCCEEEEeeCCC-ceEEEEEEcCCCCCCCeEEEcHHHHhhccccCCCeeeEEecCCCCC
Q 042193 18 DNSVITMHPNTMDKLQ---FFQGDTVLVKGKKR-KDTVCIVLGDEQCEESKVGMNRVVRSNLRVRLGDLVSVHACPDVKY 93 (784)
Q Consensus 18 ~~~~v~l~~~~m~~Lg---l~~gd~v~i~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~v~v~~~~~~~~ 93 (784)
.-+.|.|.|++|.+|- +.--=.-+|+..+. +.+.|-|.. -.-+.|.|.|+.-++++++++.|+.|+|+.+ .+|.
T Consensus 39 ~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~LPk 116 (190)
T 2yuj_A 39 KGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVESV-NLQV 116 (190)
T ss_dssp TTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-CCCC
T ss_pred CCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-ecCC
Confidence 3457889999998764 32233556665432 345666653 3457899999999999999999999999985 7999
Q ss_pred CcEEEeccccccccccchhhHHHHHHHhhccCCcccccCcEEEEeecceEEEEEEEEecCCc-eEEeCCCc
Q 042193 94 GRRVHILPIDDTIEGVTGSLFDAYLKSYFTGSYRPVRKGDLFLVRGGVRSVEFKVIETDPGE-YCIVAPDT 163 (784)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~-~~~~~~~t 163 (784)
++.|.+.|.+..-..+ +...+.|..+++. .-.+.+||+|.+..+.+...|+|.++.|.+ .+++..+-
T Consensus 117 gt~vklqP~~~~Fl~i--~npKavLE~~Lrn-fstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidTDl 184 (190)
T 2yuj_A 117 ATYSKFQPQSPDFLDI--TNPKAVLENALRN-FACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDM 184 (190)
T ss_dssp CSEEEEEESSHHHHHS--SCHHHHHHHHHTT-CCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSCCC
T ss_pred CcEEEEEECCcccccc--ccHHHHHHHHHhc-CcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeCCE
Confidence 9999999976421112 2234455555542 345899999999988888899999999985 44544333
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.84 E-value=1.6e-05 Score=80.55 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.++..+.|+||+|||||||+++|++.+..
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45677888999999999999999999987643
No 226
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.84 E-value=2.6e-05 Score=83.47 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.++..+.|.||+|||||||+++|++.+..
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 45577888999999999999999999987643
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.81 E-value=1.3e-05 Score=77.01 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARA 240 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~ 240 (784)
+.+.++.-+.|+||||||||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 3456788899999999999999994
No 228
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=8.1e-05 Score=79.67 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=66.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hcchhHHHHHHHHHHHH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK----------------LAGESESNLRKAFEEAE 277 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~----------------~~g~~~~~l~~vf~~a~ 277 (784)
|+.++.-++|+||||||||||+..++..+ +...+++++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56778889999999999999999998874 455667776432110 00112222222222233
Q ss_pred hcCCeEEEeehhhhhcCCC------CCCchHHHHHHHHHHHHHhhccccCCcEEEEEE
Q 042193 278 KNAPSIIFIDEIDSIAPKR------EKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGA 329 (784)
Q Consensus 278 ~~~p~il~iDEid~l~~~~------~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~a 329 (784)
...+.++++|.+..+.+.. +...-....+...+++..+..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999998887521 111111223455566665655544445555543
No 229
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.80 E-value=6.9e-05 Score=80.22 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=70.7
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc-------------c---CcchHHHHHHHHHhh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW-------------F---GESEANVREIFDKAR 550 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-------------~---g~~~~~i~~~f~~a~ 550 (784)
|+.+..-++|+||||+|||||+..++... +..++++++.+..... + ...+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45555559999999999999999999864 5667778776532210 0 112223333333334
Q ss_pred hCCCeEEEEeccchhhhhc---CCCCCCC-CCchHHHHHHHHHHhhCCCCCCcEEEEEec
Q 042193 551 QSAPCVLFFDELDSIATQR---GASVGDA-GGAADRVLNQLLTEMDGMNAKKTVFIIGAT 606 (784)
Q Consensus 551 ~~~p~vl~iDEid~l~~~r---~~~~~~~-~~~~~~~l~~ll~~ld~~~~~~~v~vi~aT 606 (784)
...+.++++|.+..+.+.. +.. ++. .....+.+.+++..|..+....++.||.+.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~-G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAM-GDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCC-CSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5678999999998887521 111 111 113456777877777766544455555543
No 230
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.79 E-value=3.2e-05 Score=82.98 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4456788899999999999999999998764
No 231
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.79 E-value=2.8e-05 Score=83.16 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456788899999999999999999998764
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.77 E-value=4.8e-05 Score=75.71 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGP 255 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~ 255 (784)
|+.++..++|+||||+|||||++.++...+...++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 577888999999999999999999998556667777653
No 233
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.76 E-value=3.4e-05 Score=82.85 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4456788899999999999999999999764
No 234
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=0.00011 Score=74.71 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH--HH--hCCcEEEEec
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVA--NE--TGAFFFLING 254 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la--~~--l~~~~~~v~~ 254 (784)
++.++..++|+||||+|||||++.++ .. .+...+.+++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 67888999999999999999999998 43 2334444443
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.73 E-value=6.7e-05 Score=74.65 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=32.6
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
|+.+..-++|+||||+|||++++.++...+.+.+.++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555555899999999999999999986677788887654
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.72 E-value=3.1e-05 Score=77.79 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456788899999999999999999998764
No 237
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.70 E-value=3.4e-05 Score=83.19 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3456788899999999999999999998764
No 238
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.69 E-value=4.7e-05 Score=81.39 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 4467788899999999999999999998764
No 239
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.68 E-value=3.9e-05 Score=78.89 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=27.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.+++.+.|.||+|+|||||+++|++.+..
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 34567888999999999999999999987643
No 240
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.68 E-value=0.0001 Score=75.44 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456788899999999999999999998764
No 241
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=0.00013 Score=74.07 Aligned_cols=114 Identities=26% Similarity=0.225 Sum_probs=65.4
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHH--HH--hCCcEEEEecccchhc------ccC-----------------------
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIA--NE--CQANFVSVKGPELLTM------WFG----------------------- 536 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la--~~--~~~~~i~v~~~~l~~~------~~g----------------------- 536 (784)
|+.+..-++|.||||+|||||++.++ .. .+...+.+...+.... .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45555569999999999999999998 43 3455555554332100 000
Q ss_pred -------------cchHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEE
Q 042193 537 -------------ESEANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFII 603 (784)
Q Consensus 537 -------------~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi 603 (784)
........+........|.++++||.-++..... ......+.+..++..+.. .+..||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEE
Confidence 0112233334444557899999999988775311 112334456666666642 234566
Q ss_pred EecCCCCCC
Q 042193 604 GATNRPDVI 612 (784)
Q Consensus 604 ~aTn~~~~l 612 (784)
.+|+..+..
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 677776554
No 242
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.66 E-value=6.6e-05 Score=80.65 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEech
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG---------AFFFLINGP 255 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~~~v~~~ 255 (784)
.++.++.-+.|+||||||||||++.++.... ...+++++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4678888999999999999999999999862 344777664
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.65 E-value=4.7e-05 Score=81.69 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=51.5
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc----ccC------------cchHHHHHHHHHhh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM----WFG------------ESEANVREIFDKAR 550 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~----~~g------------~~~~~i~~~f~~a~ 550 (784)
|+.+..-++|+||||+|||+|+..++... +.+.++++...-... ..| ..+..+..+....+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55555569999999999999999998654 556777766543211 111 11222333333444
Q ss_pred hCCCeEEEEeccchhhh
Q 042193 551 QSAPCVLFFDELDSIAT 567 (784)
Q Consensus 551 ~~~p~vl~iDEid~l~~ 567 (784)
...|+++|||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 244
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.64 E-value=8.4e-05 Score=81.02 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEechhhhh--------hhcc----------------
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMS--------KLAG---------------- 263 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~~~v~~~~l~~--------~~~g---------------- 263 (784)
|+.++.-++|+||||||||||++.++-.. +...+++++.+... ...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 68888999999999999999999776332 23367776643110 0000
Q ss_pred ---hhHHHHHHHHHHHHhcCCeEEEeehhhhhcCCCCCCchHH--HHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 042193 264 ---ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV--ERRIVSQLLTLMDGLKSRAHVVVMGATNR 332 (784)
Q Consensus 264 ---~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~--~~~v~~~Ll~~ld~~~~~~~vivI~atn~ 332 (784)
.....+..+........|.++++|++..+........+.. ..+....++..+..+....++.||.+++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0011222333344456789999999988876432211111 22333555555555544434555555543
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.64 E-value=6.6e-05 Score=80.55 Aligned_cols=78 Identities=28% Similarity=0.430 Sum_probs=50.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhcc------------hhHHHHHHHHHHHH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS----KLAG------------ESESNLRKAFEEAE 277 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~----~~~g------------~~~~~l~~vf~~a~ 277 (784)
|+.++..++|+||||+|||||+..++... +...++++...... ...| ..+..+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56778889999999999999999988654 45566666432111 0011 11222222222333
Q ss_pred hcCCeEEEeehhhhhcC
Q 042193 278 KNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 278 ~~~p~il~iDEid~l~~ 294 (784)
...|.++++|++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999874
No 246
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.63 E-value=5.1e-05 Score=77.39 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=25.0
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhCC
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQA 520 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~ 520 (784)
++.++++||||||||||++|+++|+....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33567999999999999999999998654
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.63 E-value=6.6e-05 Score=75.99 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=51.4
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHH--h-------CCcEEEEecccchh--------cccCc---------------
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANE--C-------QANFVSVKGPELLT--------MWFGE--------------- 537 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~--~-------~~~~i~v~~~~l~~--------~~~g~--------------- 537 (784)
|+.+..-++|+||||+|||+|++.++.. . +.+.+++++.+... ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555556999999999999999999995 2 45678887665210 00110
Q ss_pred chH----HHHHHHHHhhhCCCeEEEEeccchhhh
Q 042193 538 SEA----NVREIFDKARQSAPCVLFFDELDSIAT 567 (784)
Q Consensus 538 ~~~----~i~~~f~~a~~~~p~vl~iDEid~l~~ 567 (784)
+.. .+..+.+......|.+++|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 122344445556789999999998764
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.62 E-value=0.00014 Score=78.34 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=69.2
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhcc----cC------------cchHHHHHHHHHhh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTMW----FG------------ESEANVREIFDKAR 550 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~~----~g------------~~~~~i~~~f~~a~ 550 (784)
|+++..-++|+||||+|||+||..++... +.+++.++...-.... .| ..+.....+.+..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666669999999999999999888764 5677777765432111 11 11222222333334
Q ss_pred hCCCeEEEEeccchhhhhcCCCC--CCC-CCchHHHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 551 QSAPCVLFFDELDSIATQRGASV--GDA-GGAADRVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 551 ~~~p~vl~iDEid~l~~~r~~~~--~~~-~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
...+++||||.+..+........ ++. .+...+.+.+++..|..+....++.||.+..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 56789999999999874221110 000 0123356677777776554444556665543
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.62 E-value=0.00032 Score=75.17 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=97.8
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHh---CC-cEEEEecccchhcccCcchHHHHHHHHHhh----hCCCeEEEEeccch
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANEC---QA-NFVSVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDS 564 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~-~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~ 564 (784)
....+|||||+|.||++.++.++..+ +. ++..+.-. + ...++.+++.+. .....|+++||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 44569999999999999999998864 22 22222110 1 123445554443 34467999999987
Q ss_pred -hhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC-----CCCCCccccCCCCcccccccCCCCHHHHHH
Q 042193 565 -IATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR-----PDVIDPALLRPGRLDQLIYIPLPDEASRLQ 638 (784)
Q Consensus 565 -l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~-----~~~ld~allr~gRf~~~i~~~~p~~~~r~~ 638 (784)
+.. ...+.|+..++... ...++|+++++. ...+-+++.+ |. .++.|.+++..+...
T Consensus 88 kl~~--------------~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPNA--------------AINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCCT--------------THHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCh--------------HHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 421 24567788887543 345556655542 1234456665 55 478899999989999
Q ss_pred HHHHHhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHH
Q 042193 639 IFKACLRKSPISPD-VDLSALARYTHGFSGADITEICQRAC 678 (784)
Q Consensus 639 il~~~~~~~~~~~~-~~~~~la~~~~g~sg~di~~l~~~a~ 678 (784)
.++..++..++.-+ ..+..|++.+.| +-+++.+.+...+
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 99888877765422 236667776655 4444444444443
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=7.7e-05 Score=74.85 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=28.2
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEec
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKG 527 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~ 527 (784)
|+.+..-++|+||||+|||||++.++... +.+++.+..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 44555558999999999999999999753 445555543
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.61 E-value=0.00011 Score=78.74 Aligned_cols=115 Identities=16% Similarity=0.234 Sum_probs=63.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEechhh---------hhhh-----------------
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEI---------MSKL----------------- 261 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~~~v~~~~l---------~~~~----------------- 261 (784)
|+.++.-++|+||||+|||+|+..++... +...++++.... ....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 67888889999999999999999999862 345667765331 1000
Q ss_pred -cchhHHHHHHHHHHHHh--cCCeEEEeehhhhhcCCCCCCchHHHH--HHHHHHHHHhhccccCCcEEEEEEcC
Q 042193 262 -AGESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTNGEVER--RIVSQLLTLMDGLKSRAHVVVMGATN 331 (784)
Q Consensus 262 -~g~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~--~v~~~Ll~~ld~~~~~~~vivI~atn 331 (784)
..+....+..+.+.... ..+.+++||.+..+........+++.. ....+++..+..+....++.||.+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 00011112222333444 678999999999887432111112211 12344444444443334455555443
No 252
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.61 E-value=3e-05 Score=79.70 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=50.8
Q ss_pred hhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---cEEEEechhhh---h--------hhcchhHHHHHHHHHHHH
Q 042193 212 LFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIM---S--------KLAGESESNLRKAFEEAE 277 (784)
Q Consensus 212 ~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~---~~~~v~~~~l~---~--------~~~g~~~~~l~~vf~~a~ 277 (784)
.++++.+.++..++|+||+||||||+++++++.+.. --+.+.+..+. . ...+.....++..+..+.
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 444444667888999999999999999999997632 12333332210 0 000101123466677777
Q ss_pred hcCCeEEEeehhh
Q 042193 278 KNAPSIIFIDEID 290 (784)
Q Consensus 278 ~~~p~il~iDEid 290 (784)
...|.++++||.-
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 7889999999963
No 253
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.61 E-value=7.7e-05 Score=77.09 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=27.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567788899999999999999999998764
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.61 E-value=0.00021 Score=76.97 Aligned_cols=113 Identities=20% Similarity=0.391 Sum_probs=64.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----hcc-----------hhHHHHHHHHHH-HH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK----LAG-----------ESESNLRKAFEE-AE 277 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~~~----~~g-----------~~~~~l~~vf~~-a~ 277 (784)
|+.++..++|+||||+|||+|+..++... +..+++++...-... ..+ .....+...+.. ..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56778889999999999999999888654 456666665321110 000 111222233332 23
Q ss_pred hcCCeEEEeehhhhhcCCCCCCc--hH----HHHHHHHHHHHHhhccccCCcEEEEEE
Q 042193 278 KNAPSIIFIDEIDSIAPKREKTN--GE----VERRIVSQLLTLMDGLKSRAHVVVMGA 329 (784)
Q Consensus 278 ~~~p~il~iDEid~l~~~~~~~~--~~----~~~~v~~~Ll~~ld~~~~~~~vivI~a 329 (784)
...+.+|+||.+..+.+...... ++ ...+...+++..+..+....++.||.+
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 45689999999999985322110 11 222344455555544444445555554
No 255
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.60 E-value=3.5e-05 Score=80.89 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=27.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.++..+.|+||+|+|||||+++|++.+..
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 45678889999999999999999999987643
No 256
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.60 E-value=0.00013 Score=75.16 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567788899999999999999999998764
No 257
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.59 E-value=0.0001 Score=75.56 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=26.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
.+.++..+.|.||+|||||||+++|++.+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788899999999999999999998764
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.56 E-value=8.3e-05 Score=79.11 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEechhh---------hhhh-------------c--c
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEI---------MSKL-------------A--G 263 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~~~v~~~~l---------~~~~-------------~--g 263 (784)
|+.++..++|+||||+|||+++..++... +...++++.... .... . .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 67888899999999999999999999764 445667765431 0000 0 0
Q ss_pred hhH---HHHHHHHHHHHh-cCCeEEEeehhhhhcC
Q 042193 264 ESE---SNLRKAFEEAEK-NAPSIIFIDEIDSIAP 294 (784)
Q Consensus 264 ~~~---~~l~~vf~~a~~-~~p~il~iDEid~l~~ 294 (784)
..+ ..+..+...... ..+.+++||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 112233334444 6789999999998864
No 259
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.56 E-value=0.0001 Score=79.47 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3456788899999999999999999998764
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.55 E-value=5.8e-05 Score=76.92 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.++..+.|.||+|+|||||+++|++.+..
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44567888999999999999999999987643
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.54 E-value=6.4e-05 Score=76.19 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=26.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.+ ..+.|.||+|+|||||+++|++.+.
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45677 8899999999999999999999764
No 262
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.54 E-value=0.0001 Score=75.00 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4456788899999999999999999998764
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=0.00025 Score=67.96 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 256 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~ 256 (784)
+..|+|+|+|||||||+++.|+..++..++.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 457999999999999999999999988777665443
No 264
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.49 E-value=0.00019 Score=77.08 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh----hhhhcc-----------hhHHHHHHHHHH-HH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI----MSKLAG-----------ESESNLRKAFEE-AE 277 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l----~~~~~g-----------~~~~~l~~vf~~-a~ 277 (784)
|+.++..++|+|+||+||||||..++... +...++++.... .....+ .....+..++.. ..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46778889999999999999999988764 456677765221 100000 112233333332 23
Q ss_pred hcCCeEEEeehhhhhcC
Q 042193 278 KNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 278 ~~~p~il~iDEid~l~~ 294 (784)
...+.+++||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46789999999998875
No 265
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.48 E-value=7.4e-05 Score=80.13 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4566788899999999999999999998764
No 266
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.47 E-value=0.00024 Score=72.54 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788899999999999999999998764
No 267
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.47 E-value=0.00021 Score=77.53 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.+++.+.|.||+|||||||+++|++.+
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456788899999999999999999999865
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.45 E-value=0.00011 Score=73.55 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.4
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---------CCcEEEEeccc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFVSVKGPE 529 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~i~v~~~~ 529 (784)
|+.+..-+.|+||||+|||||++.++... +...+.+++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45555559999999999999999999854 23467776654
No 269
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.00016 Score=77.69 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=66.8
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccchhc----ccC-----------cchHHHHHHHH-Hhh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELLTM----WFG-----------ESEANVREIFD-KAR 550 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~~~----~~g-----------~~~~~i~~~f~-~a~ 550 (784)
|+++..-++|+|+||+|||+||..++... +.+++.++...-... ..| .....+..+.. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56666669999999999999999998764 567777876432211 011 11122333332 234
Q ss_pred hCCCeEEEEeccchhhhhcCCC--CCCC-CCchHHHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 551 QSAPCVLFFDELDSIATQRGAS--VGDA-GGAADRVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 551 ~~~p~vl~iDEid~l~~~r~~~--~~~~-~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
...+.++|||.+..+....... .++. .+...+.+.+++..|..+....++.||.+..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 5678899999999987422100 0010 0122345566666665443333455665543
No 270
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.44 E-value=0.00027 Score=73.50 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=49.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhh----hhc-----------chhHHHH-HHHHHH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMS----KLA-----------GESESNL-RKAFEE 275 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~~~v~~~~l~~----~~~-----------g~~~~~l-~~vf~~ 275 (784)
|+.++ -++|+||||||||||+..++... +...+++++.+-.. ... ......+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46666 69999999999999987766543 55677777643211 000 0111122 222222
Q ss_pred ---HHhcCCeEEEeehhhhhcCC
Q 042193 276 ---AEKNAPSIIFIDEIDSIAPK 295 (784)
Q Consensus 276 ---a~~~~p~il~iDEid~l~~~ 295 (784)
.....|.++++|-+..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 24567999999999999753
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.44 E-value=6.2e-05 Score=74.81 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456788899999999999999999998764
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.43 E-value=0.00025 Score=71.71 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|+||+|||||||+++|++.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456778899999999999999999999875
No 273
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.42 E-value=0.00011 Score=75.57 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567788999999999999999999998764
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.42 E-value=0.0001 Score=74.79 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788899999999999999999998764
No 275
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.41 E-value=9.5e-05 Score=79.41 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=46.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEech-hhh---------hhhcchhHHHHHHHHHHHHhcCCeEE
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIM---------SKLAGESESNLRKAFEEAEKNAPSII 284 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~----~~~~~v~~~-~l~---------~~~~g~~~~~l~~vf~~a~~~~p~il 284 (784)
.++..++|+||+||||||+++++++.++ ..++.+..+ ++. ....+.....+...+..+..+.|.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 3456799999999999999999998763 233333221 110 00011111234557778888999999
Q ss_pred Eeehhh
Q 042193 285 FIDEID 290 (784)
Q Consensus 285 ~iDEid 290 (784)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999973
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.00012 Score=71.97 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLI 252 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v 252 (784)
.+.++..|+|+|||||||||+++.|++.++..++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345677899999999999999999999998876543
No 277
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.39 E-value=0.00024 Score=72.50 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~ 244 (784)
+.+.++..+.|.||+|+|||||+++|++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567888999999999999999999986
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.38 E-value=0.0001 Score=71.71 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=33.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
.+.++..++|+|||||||||+++.|++.++...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35677889999999999999999999987666777776554
No 279
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.35 E-value=5e-05 Score=78.79 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456788899999999999999999998764
No 280
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.33 E-value=0.00029 Score=77.06 Aligned_cols=118 Identities=19% Similarity=0.117 Sum_probs=66.3
Q ss_pred eEEEECCCCCcHHHHHHHH-HHHhCCcEEEEech-----hhhhhhcch--hHHHHHHHHHHHHhcCCeEEEeehhhhhcC
Q 042193 223 GILLYGPPGTGKTLIARAV-ANETGAFFFLINGP-----EIMSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 294 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~l-a~~l~~~~~~v~~~-----~l~~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 294 (784)
+|||.|+||| ||++|+++ ++.++... ++.+. .+.....+. ..-.-+.+ ..| ...++|+||++.+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l-~LA---dgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAA-VLA---DGGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHH-HHT---TTSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCee-EEc---CCCeeehHhhhhCCH
Confidence 7999999999 99999999 77665433 33321 111110000 00000111 112 135999999987742
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-------ccCCcEEEEEEcCCCC-----------CCCHHHHhcCCcceEE-EeCCC
Q 042193 295 KREKTNGEVERRIVSQLLTLMDGL-------KSRAHVVVMGATNRPN-----------SIDPALRRFGRFDREI-DIGVP 355 (784)
Q Consensus 295 ~~~~~~~~~~~~v~~~Ll~~ld~~-------~~~~~vivI~atn~~~-----------~ld~al~r~~rf~~~i-~i~~p 355 (784)
.....|+..|+.- .-..++.||+|+|+.. .+++++.. ||+..+ .+..|
T Consensus 315 -----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~p 381 (506)
T 3f8t_A 315 -----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDP 381 (506)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--
T ss_pred -----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCC
Confidence 3445666666521 1234688999999865 67788877 897644 34455
Q ss_pred CHHH
Q 042193 356 DEVG 359 (784)
Q Consensus 356 ~~~~ 359 (784)
+.+.
T Consensus 382 d~e~ 385 (506)
T 3f8t_A 382 RPGE 385 (506)
T ss_dssp ----
T ss_pred ChhH
Confidence 5443
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.30 E-value=0.00037 Score=74.81 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=31.4
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHhC---------CcEEEEeccc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFVSVKGPE 529 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---------~~~i~v~~~~ 529 (784)
|+.+..-+.|+||||+|||+|++.++.... ...+++++.+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455555599999999999999999999862 3457887755
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.30 E-value=0.0002 Score=73.72 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=31.5
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEec
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKG 527 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~ 527 (784)
.++.+++....| +.|.||+|+|||||++++++... .+-+.+++
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 455556665555 88999999999999999999753 34455444
No 283
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00041 Score=71.18 Aligned_cols=29 Identities=31% Similarity=0.633 Sum_probs=26.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+. +..+.|.||+|+|||||+++|++.+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567 7889999999999999999999987
No 284
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.00086 Score=71.77 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=66.9
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---------CCcEEEEecccchh--------cccCc---------------
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFVSVKGPELLT--------MWFGE--------------- 537 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~i~v~~~~l~~--------~~~g~--------------- 537 (784)
|+.+..-++|+||||+|||+++..+|... +.+.++++....+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555558999999999999999999873 45677777655211 00010
Q ss_pred -ch---HHHHHHHHHhhh--CCCeEEEEeccchhhhhcCCCCCCCCCchH--HHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 538 -SE---ANVREIFDKARQ--SAPCVLFFDELDSIATQRGASVGDAGGAAD--RVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 538 -~~---~~i~~~f~~a~~--~~p~vl~iDEid~l~~~r~~~~~~~~~~~~--~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
.+ ..+..+....+. ..+.+||||.+..+....-... +...+ ..+.+++..|..+....++.||.++..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG---GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 11 112223344445 6789999999999875311100 11122 235666666655444445556655443
No 285
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.28 E-value=0.00062 Score=68.39 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4456788899999999999999999999764
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.26 E-value=0.00046 Score=71.58 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
|+.++..++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999998754
No 287
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.26 E-value=0.00032 Score=74.51 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=67.9
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---------CCcEEEEecccch---------hc------------ccC---
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFVSVKGPELL---------TM------------WFG--- 536 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~i~v~~~~l~---------~~------------~~g--- 536 (784)
|+++..-++|+||||+|||+++..++... +.+.++++...-+ .. ++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56655669999999999999999999875 4567777766521 00 000
Q ss_pred cch---HHHHHHHHHhhh-CCCeEEEEeccchhhhhcCCCCCCCCCchH--HHHHHHHHHhhCCCCCCcEEEEEecC
Q 042193 537 ESE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGASVGDAGGAAD--RVLNQLLTEMDGMNAKKTVFIIGATN 607 (784)
Q Consensus 537 ~~~---~~i~~~f~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~--~~l~~ll~~ld~~~~~~~v~vi~aTn 607 (784)
..+ ..+..+....+. ..+.++|||.+..+........ +...+ ..+.+++..|..+....++.||.+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT---TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011 123334444455 6789999999999875321100 11122 24566666666554333455555543
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.24 E-value=0.00037 Score=71.55 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=48.4
Q ss_pred hhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---CcEEEEecccchh-----------cccCcchHHHHHHHHHhh
Q 042193 485 KFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFVSVKGPELLT-----------MWFGESEANVREIFDKAR 550 (784)
Q Consensus 485 ~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i~v~~~~l~~-----------~~~g~~~~~i~~~f~~a~ 550 (784)
.++++.+.+..-++|.||+|+||||+++++++... ..-+.+.+..+.. ..+|......+..+..+-
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 44444544444489999999999999999998752 3344444332210 011111123455556665
Q ss_pred hCCCeEEEEeccc
Q 042193 551 QSAPCVLFFDELD 563 (784)
Q Consensus 551 ~~~p~vl~iDEid 563 (784)
...|.++++||.-
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 5689999999973
No 289
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.23 E-value=0.00021 Score=73.92 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=32.2
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGP 528 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~ 528 (784)
.++.++++...| +.|.||+|+|||||++++++... .+-+.+++.
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~ 70 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCE
Confidence 455556666666 88999999999999999999753 234555443
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.23 E-value=0.0011 Score=71.17 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=59.0
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhC----CcEEEEecc-cchh---------cccCcchHHHHHHHHHhhhCCCeEEEEe
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQ----ANFVSVKGP-ELLT---------MWFGESEANVREIFDKARQSAPCVLFFD 560 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~----~~~i~v~~~-~l~~---------~~~g~~~~~i~~~f~~a~~~~p~vl~iD 560 (784)
.-+++.||+|+||||+++++++... ..++.+..+ ++.. ..++.........+..+-.+.|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 3489999999999999999998753 333433221 1110 0112112234557777778899999999
Q ss_pred ccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCCCC
Q 042193 561 ELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDVI 612 (784)
Q Consensus 561 Eid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~~l 612 (784)
|+-. ......++..... +..|+.+++..+.+
T Consensus 204 Ep~d----------------~e~~~~~~~~~~~-----G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 204 EMRD----------------LETIRLALTAAET-----GHLVFGTLHTTSAA 234 (356)
T ss_dssp CCCS----------------HHHHHHHHHHHHT-----TCEEEEEESCSSHH
T ss_pred CCCC----------------HHHHHHHHHHHhc-----CCEEEEEEccChHH
Confidence 9731 2233444444331 33578888876544
No 291
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.22 E-value=0.00022 Score=76.75 Aligned_cols=44 Identities=30% Similarity=0.488 Sum_probs=32.0
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGP 528 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~ 528 (784)
.++.+++....| +.|.||+|||||||+++|++... .+-+.+++.
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 65 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCE
Confidence 445556666665 88999999999999999999763 334555443
No 292
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.22 E-value=0.00046 Score=71.78 Aligned_cols=115 Identities=14% Similarity=0.227 Sum_probs=64.5
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh-----CCcEEEEecccchhc----ccC-----------cchHHH-HHHHHH
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFVSVKGPELLTM----WFG-----------ESEANV-REIFDK 548 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~i~v~~~~l~~~----~~g-----------~~~~~i-~~~f~~ 548 (784)
|+.+. -++++||||+|||+|+..++... +...++++..+-+.. -+| .+...+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45544 48999999999999987776543 567888887653211 011 011112 122222
Q ss_pred ---hhhCCCeEEEEeccchhhhhcCCCC--CCC-CC--chHHHHHHHHHHhhCCCCCCcEEEEEe
Q 042193 549 ---ARQSAPCVLFFDELDSIATQRGASV--GDA-GG--AADRVLNQLLTEMDGMNAKKTVFIIGA 605 (784)
Q Consensus 549 ---a~~~~p~vl~iDEid~l~~~r~~~~--~~~-~~--~~~~~l~~ll~~ld~~~~~~~v~vi~a 605 (784)
.+...|.++|+|-|..+.+.-...+ ++. .+ ...|.++++|..|..+....++.||.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 3566799999999999875321110 010 01 345677777776655444444555544
No 293
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.0016 Score=65.71 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLING 254 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~ 254 (784)
|+.++..++|+||||+||||++..++... +...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67788899999999999999988776543 445555554
No 294
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.00035 Score=74.73 Aligned_cols=44 Identities=32% Similarity=0.548 Sum_probs=32.2
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGP 528 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~ 528 (784)
.++++++....| +.|.||+|||||||+++|++... .+-+.+++.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 445556666666 88999999999999999999753 344555443
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.18 E-value=0.00023 Score=77.04 Aligned_cols=80 Identities=20% Similarity=0.386 Sum_probs=50.8
Q ss_pred hhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEech-hhh-h---hhcch-----hHHHHHHHHHHH
Q 042193 211 QLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIM-S---KLAGE-----SESNLRKAFEEA 276 (784)
Q Consensus 211 ~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l~----~~~~~v~~~-~l~-~---~~~g~-----~~~~l~~vf~~a 276 (784)
..++.+.+.++..++|+||+||||||+++++++.+. ..++.+..+ +.. . .+..+ ....+...+..+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 345555667788899999999999999999998764 223333321 000 0 00100 111234566667
Q ss_pred HhcCCeEEEeehhh
Q 042193 277 EKNAPSIIFIDEID 290 (784)
Q Consensus 277 ~~~~p~il~iDEid 290 (784)
....|.++++||+-
T Consensus 206 L~~~pd~illdE~~ 219 (372)
T 2ewv_A 206 LREDPDVIFVGEMR 219 (372)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEEECCCC
Confidence 77889999999973
No 296
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.16 E-value=0.0004 Score=80.03 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=28.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+++++.+.|+||+|+|||||++++++.+..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 45678889999999999999999999987654
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.00072 Score=69.04 Aligned_cols=40 Identities=38% Similarity=0.517 Sum_probs=33.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
...+..++|+|+|||||||+++.|++.++...+.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456789999999999999999999999866677777654
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.14 E-value=0.00074 Score=64.62 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=30.3
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPE 529 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~ 529 (784)
.-++|.|+||+||||+++.|+..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 34899999999999999999999998888766543
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.00031 Score=67.81 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=28.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLI 252 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v 252 (784)
+..|+|+|+|||||||+++.|+..++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999999876643
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.10 E-value=0.00031 Score=67.00 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=28.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
+..|+|+|||||||||+++.|++.++..+ +++..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~--id~d~~ 38 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQE 38 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE--EEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE--EeccHH
Confidence 45799999999999999999999988644 444433
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.10 E-value=0.00039 Score=67.52 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=28.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
...+..|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999876544
No 302
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.10 E-value=0.0058 Score=70.41 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=36.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN 243 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~ 243 (784)
...+.|-+..++.|.+.+... -.....|+|+||+|+||||||+.++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 346899999999998876431 02345799999999999999998864
No 303
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.10 E-value=0.00048 Score=79.55 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=28.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
++.+++++.+.|+||+|+|||||++.+++.+..
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 345788899999999999999999999987643
No 304
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.10 E-value=0.00044 Score=75.31 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=65.2
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---------CCcEEEEecccchhc--------ccCc---------------
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFVSVKGPELLTM--------WFGE--------------- 537 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~i~v~~~~l~~~--------~~g~--------------- 537 (784)
|+.+..-++|+||||+|||+|++.++-.. +.+.+++++.+.... .+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666669999999999999999776432 245778877653110 0110
Q ss_pred -c---hHHHHHHHHHhhhCCCeEEEEeccchhhhhcCCCCCCCCCch--HHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 538 -S---EANVREIFDKARQSAPCVLFFDELDSIATQRGASVGDAGGAA--DRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 538 -~---~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~--~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
. ...+..+........|.++++|++-.+....-. + .++.. .+.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s--g-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS--G-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhc--C-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0 112223334444567899999999887643111 0 01112 2344556666555543335566666654
No 305
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00055 Score=72.64 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~ 244 (784)
|+.++.-++|+||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778888999999999999999999875
No 306
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.03 E-value=0.00053 Score=73.34 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=33.2
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEeccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPE 529 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~ 529 (784)
.++++++....| +.|.||+|+|||||++++++... .+-+.+++.+
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~ 91 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence 455566666666 88999999999999999999753 3445555433
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.03 E-value=0.00052 Score=67.34 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 257 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l 257 (784)
.++..+.|.|||||||||+++.|++.+ +...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567789999999999999999999988 444456665444
No 308
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.03 E-value=0.00032 Score=67.83 Aligned_cols=32 Identities=41% Similarity=0.573 Sum_probs=26.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH-hCCcEE
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANE-TGAFFF 250 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~-l~~~~~ 250 (784)
..+..|+|+|+|||||||+++.|+.. ++.+++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 34567999999999999999999998 675544
No 309
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.03 E-value=0.0012 Score=68.42 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.8
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 518 (784)
|+....-++|+||||+|||||++.++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555559999999999999999998753
No 310
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.01 E-value=0.0004 Score=79.94 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
++.+++++.+.|+||+|+|||||++++++.+..
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 345678889999999999999999999987654
No 311
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.01 E-value=0.00055 Score=73.20 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=30.9
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEec
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKG 527 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~ 527 (784)
.++.+++....| +.|.||+|||||||+++||+... ..-+.+++
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 344455555555 88999999999999999999753 33455544
No 312
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.98 E-value=0.00059 Score=73.09 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=31.0
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEec
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKG 527 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~ 527 (784)
.++.+++....| +.|.||+|||||||+++||+... ..-+.+++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 344455555555 88999999999999999999753 34444444
No 313
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.00072 Score=76.72 Aligned_cols=29 Identities=38% Similarity=0.488 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
.+.+++.+.|.||+|||||||+++|++.+
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999875
No 314
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.00053 Score=67.22 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=28.5
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
+...++|.|||||||||+++.||..++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 344599999999999999999999999887643
No 315
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.97 E-value=0.0012 Score=65.81 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=43.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechh-------hhhhhcchh-H----HHHHHHHHHHHh----cC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE-------IMSKLAGES-E----SNLRKAFEEAEK----NA 280 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~-------l~~~~~g~~-~----~~l~~vf~~a~~----~~ 280 (784)
++.-++++||+|+||||++..++..+ +...+.++... +.+. .|.. . .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35568899999999999988877665 44455553211 1111 1100 0 011234544443 35
Q ss_pred CeEEEeehhhhhc
Q 042193 281 PSIIFIDEIDSIA 293 (784)
Q Consensus 281 p~il~iDEid~l~ 293 (784)
+.+++|||+.++.
T Consensus 90 ~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 90 TKVIGIDEVQFFD 102 (223)
T ss_dssp CCEEEECSGGGSC
T ss_pred CCEEEEecCccCc
Confidence 7899999998753
No 316
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.97 E-value=0.00052 Score=64.60 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
++.+.++..+.|.||+|+|||||++.|++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4466788889999999999999999999988
No 317
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.96 E-value=0.0013 Score=68.46 Aligned_cols=39 Identities=33% Similarity=0.560 Sum_probs=32.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
..+..++|.|||||||||+++.|+..++...+.|++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 446679999999999999999999988655677776444
No 318
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.00036 Score=67.74 Aligned_cols=38 Identities=32% Similarity=0.421 Sum_probs=32.1
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
...-++|.||||+||||+++.|++..+.+.+.+++.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34458999999999999999999988778888887665
No 319
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.96 E-value=0.0023 Score=71.24 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=31.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET----GAFFFLING 254 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l----~~~~~~v~~ 254 (784)
|+.++.-++|.|+||+|||||+..++..+ +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 68889999999999999999999988754 345656553
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.0006 Score=66.87 Aligned_cols=37 Identities=35% Similarity=0.604 Sum_probs=29.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
.++..++|+|||||||||+++.|++.++. +.+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 45678999999999999999999999865 44555544
No 321
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.96 E-value=0.00095 Score=76.88 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
++.+++++.+.|+||+|+|||||++.+++.+.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567888899999999999999999998763
No 322
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.96 E-value=0.0054 Score=68.58 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=48.2
Q ss_pred CCe-EEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC--CCCHHHHhcCCcceEEEeCCCC
Q 042193 280 APS-IIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN--SIDPALRRFGRFDREIDIGVPD 356 (784)
Q Consensus 280 ~p~-il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~--~ld~al~r~~rf~~~i~i~~p~ 356 (784)
.|. ++++||+..++... ...+...+..+.. ......+-+|.+|.+|. .++..++. -+...|.+...+
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar-~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQ-KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHH-HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHH-HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 354 78999998776411 1222222222222 12233677777888886 57888876 688888999888
Q ss_pred HHHHHHHHH
Q 042193 357 EVGRLEVFR 365 (784)
Q Consensus 357 ~~~R~~il~ 365 (784)
..+...++.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777764
No 323
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.95 E-value=0.00051 Score=79.16 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
++.+++++.+.|+||+|+|||||++.+++.+..
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 345678889999999999999999999987643
No 324
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00066 Score=65.70 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=19.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 042193 221 PKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~ 244 (784)
+.-++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999998666554
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.94 E-value=0.00066 Score=65.21 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.+..|+|+|+|||||||+++.|+..++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45679999999999999999999999876653
No 326
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.0011 Score=64.25 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=21.5
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCcEEEE
Q 042193 497 VLFYGPPGCGKTLLAKAIANEC---QANFVSV 525 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~---~~~~i~v 525 (784)
.+++||+|+||||++..++... +...+.+
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 6899999999999986666543 4554444
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.93 E-value=0.00062 Score=65.06 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=28.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
++..++|+|||||||||+++.|++.++.. .+++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCccc
Confidence 45679999999999999999999988754 4455443
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00056 Score=64.92 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLIN 253 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v~ 253 (784)
.|+|.|+|||||||+++.|++.++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999997765443
No 329
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.91 E-value=0.0002 Score=76.20 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEechhhhh-----h---hcchhHHHHHHHHHHHHhcCCeEEEee
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMS-----K---LAGESESNLRKAFEEAEKNAPSIIFID 287 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~~~l~~-----~---~~g~~~~~l~~vf~~a~~~~p~il~iD 287 (784)
+.++..++|+||+|||||||+++|++.+.. ..+.+++..... . +........+..+..+....|.++++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 345778999999999999999999998753 346666543211 0 110012345566777778899999999
Q ss_pred hhh
Q 042193 288 EID 290 (784)
Q Consensus 288 Eid 290 (784)
|.-
T Consensus 248 E~~ 250 (330)
T 2pt7_A 248 ELR 250 (330)
T ss_dssp CCC
T ss_pred CCC
Confidence 964
No 330
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.91 E-value=0.0015 Score=78.31 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~ 244 (784)
.+..++.++|+||+|+||||+++.++..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3456778999999999999999998753
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0023 Score=65.52 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH---hCCcEEEEechhhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIM 258 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~---l~~~~~~v~~~~l~ 258 (784)
+..|+|+|+|||||||+++.|+.. .+..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 457999999999999999999997 67666656665544
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.89 E-value=0.00061 Score=65.18 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.|+|.|+|||||||+++.|++.++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999976543
No 333
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.87 E-value=0.0042 Score=62.56 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=29.1
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHH---hCCcEEEEecc
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANE---CQANFVSVKGP 528 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~---~~~~~i~v~~~ 528 (784)
|+.+..-++|+||||+|||+++..++.. .+.+.+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5665566899999999999998877664 25566666543
No 334
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.86 E-value=0.00073 Score=64.11 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
-..|+|.|+|||||||+++.|+..++.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3579999999999999999999999987654
No 335
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.85 E-value=0.001 Score=63.79 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 257 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l 257 (784)
++..+.|+|++||||||+++.|++.+ +.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 46779999999999999999999987 777777775443
No 336
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.85 E-value=0.0077 Score=69.39 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred cccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHH
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIAN 516 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~ 516 (784)
...|-+...+.|.+.+... -...+-++++|++|+|||+||+.++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3556666666665554321 01234489999999999999999864
No 337
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.00079 Score=64.93 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=28.2
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
++.++|.|+|||||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34689999999999999999999999888754
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.84 E-value=0.00069 Score=65.34 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..|+|+|+|||||||+++.|++.++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457999999999999999999999886543
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.00097 Score=71.51 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=31.7
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGP 528 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~ 528 (784)
.++.+++....| +.|.||+|||||||+++||+... ..-+.+++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 344555555555 88999999999999999999753 344555443
No 340
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.82 E-value=0.0048 Score=69.56 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=51.3
Q ss_pred eEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC--CCCccccCCCCcccccccCCCC
Q 042193 555 CVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD--VIDPALLRPGRLDQLIYIPLPD 632 (784)
Q Consensus 555 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~--~ld~allr~gRf~~~i~~~~p~ 632 (784)
-++||||++.+...- .......+..+.+. ...-++.+|.+|.+|. .|+..+.. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999887531 11122233333322 2345789999999997 78887765 788888899988
Q ss_pred HHHHHHHHH
Q 042193 633 EASRLQIFK 641 (784)
Q Consensus 633 ~~~r~~il~ 641 (784)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777774
No 341
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.82 E-value=0.0007 Score=68.97 Aligned_cols=29 Identities=41% Similarity=0.536 Sum_probs=25.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
.+.++++|+||||||||+++++||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33568999999999999999999998654
No 342
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.82 E-value=0.0043 Score=69.40 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=50.6
Q ss_pred CCe-EEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCCC--CCCccccCCCCcccccccC
Q 042193 553 APC-VLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD--VIDPALLRPGRLDQLIYIP 629 (784)
Q Consensus 553 ~p~-vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~~--~ld~allr~gRf~~~i~~~ 629 (784)
.|. +++|||+..++.. .... +..++..+-.....-++.+|.+|.+|. .++..+.. -|...|.|.
T Consensus 296 lP~ivlvIDE~~~ll~~----------~~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT----------VGKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHH----------HHHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhh----------hhHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 8999999887652 1111 223333332222233688889999987 57777765 677888899
Q ss_pred CCCHHHHHHHHHH
Q 042193 630 LPDEASRLQIFKA 642 (784)
Q Consensus 630 ~p~~~~r~~il~~ 642 (784)
..+..+...|+..
T Consensus 363 v~s~~dsr~ilg~ 375 (512)
T 2ius_A 363 VSSKIDSRTILDQ 375 (512)
T ss_dssp CSSHHHHHHHHSS
T ss_pred cCCHHHHHHhcCC
Confidence 9999888888753
No 343
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.80 E-value=0.0036 Score=65.55 Aligned_cols=37 Identities=32% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLING 254 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~ 254 (784)
..++..++|+||+|+||||++..||+.+ +..+..+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 3567789999999999999999999876 344444443
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.80 E-value=0.00083 Score=64.74 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=26.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
..|+|+|+|||||||+++.|+..++..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 359999999999999999999999987654
No 345
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.78 E-value=0.0011 Score=71.68 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=47.0
Q ss_pred hhhhcccCCCceeEEEcCCCCChhHHHHHHHHHhC---CcEE-EEecc-cc-hh---cccCc-----chHHHHHHHHHhh
Q 042193 485 KFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFV-SVKGP-EL-LT---MWFGE-----SEANVREIFDKAR 550 (784)
Q Consensus 485 ~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~i-~v~~~-~l-~~---~~~g~-----~~~~i~~~f~~a~ 550 (784)
.++.+.+.+..-+++.||+|+||||+++++++... ..-+ .+..+ ++ .. .++.+ .....+.....+-
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 44444444444589999999999999999998753 2233 33221 11 00 01111 1122344555565
Q ss_pred hCCCeEEEEeccc
Q 042193 551 QSAPCVLFFDELD 563 (784)
Q Consensus 551 ~~~p~vl~iDEid 563 (784)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999973
No 346
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.76 E-value=0.014 Score=73.47 Aligned_cols=168 Identities=10% Similarity=0.112 Sum_probs=93.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---C----CcEEEEechh--
Q 042193 186 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANET---G----AFFFLINGPE-- 256 (784)
Q Consensus 186 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~l---~----~~~~~v~~~~-- 256 (784)
...+.|.++.+++|.+.+... -...+.|.|+|+.|+||||||+.++... . ...+.++...
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 346899999999998877431 0234568999999999999999887652 1 2233444221
Q ss_pred ---hh-------hh---------hcchhHHHHHHHHHHHHhcC--CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHh
Q 042193 257 ---IM-------SK---------LAGESESNLRKAFEEAEKNA--PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLM 315 (784)
Q Consensus 257 ---l~-------~~---------~~g~~~~~l~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 315 (784)
+. .. ........+...+....... +.+|++|+++.. . .+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~----~~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------W----VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------H----HH
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------H----HH
Confidence 10 00 00112223333444433333 789999998632 0 12
Q ss_pred hccccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCC-CCHHHHHHHHHHHHcCCCcccchhhhHHHHhcCCCc
Q 042193 316 DGLKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGV-PDEVGRLEVFRIHTKNMKLAEDVDLERVARDTHGYV 390 (784)
Q Consensus 316 d~~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~-p~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~ 390 (784)
..+... ..||.||..+...... ......+.+.. ++.++-.+++..+.....-.......++++.+.|..
T Consensus 252 ~~~~~~--~~ilvTtR~~~~~~~~----~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 252 KAFDNQ--CQILLTTRDKSVTDSV----MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTTCSS--CEEEEEESSTTTTTTC----CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HhhcCC--CEEEEEcCCHHHHHhh----cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 222222 2444466554322111 12234466775 788888888887664332222233567788887764
No 347
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.76 E-value=0.0007 Score=64.66 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=16.8
Q ss_pred ceeEEEcCCCCChhHHHHH
Q 042193 495 KGVLFYGPPGCGKTLLAKA 513 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~ 513 (784)
.-+.|.||||+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3389999999999999993
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.76 E-value=0.00066 Score=69.03 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
+..|.|+|++||||||+++.|++.++..++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 6789999999999999999999999986654
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.74 E-value=0.0012 Score=64.75 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.+..|+|+|+|||||||+++.|+..++..++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 34569999999999999999999999876543
No 350
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.74 E-value=0.00086 Score=65.74 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.++.-+.|+||+|||||||++.|++.++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34577899999999999999999999864
No 351
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.73 E-value=0.0011 Score=65.08 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=26.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
+..|+|+|+|||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999865543
No 352
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.73 E-value=0.0039 Score=69.55 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 042193 223 GILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l 245 (784)
.++|.|+||||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998876
No 353
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.73 E-value=0.00087 Score=68.44 Aligned_cols=32 Identities=38% Similarity=0.489 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLING 254 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v~~ 254 (784)
.++|+|||||||||+++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999987766554
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.73 E-value=0.0023 Score=65.28 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=31.8
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
+.-++|.|+||+||||+++.|+..++.+.+.+++..+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4458999999999999999999999877777777665
No 355
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.0011 Score=64.14 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999987543
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.72 E-value=0.0012 Score=65.78 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
++..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999875543
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.72 E-value=0.001 Score=64.59 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=27.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.+..|+|.|+|||||||+++.|+..++..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 35679999999999999999999999876543
No 358
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.72 E-value=0.0011 Score=64.13 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=27.4
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
.+.-++|.|+||+||||+++.|+..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34458999999999999999999999877654
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.71 E-value=0.00096 Score=71.83 Aligned_cols=43 Identities=28% Similarity=0.507 Sum_probs=30.9
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEec
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKG 527 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~ 527 (784)
.++.+++....| +.|.||+|||||||+++||+... ..-+.+++
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 72 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence 344455555555 88999999999999999999753 23444444
No 360
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.70 E-value=0.0013 Score=65.16 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 259 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~~ 259 (784)
+..++-|+|.|||||||+|.|+.|++.++... ++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 34567789999999999999999999998654 44445543
No 361
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.69 E-value=0.0012 Score=62.76 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=25.5
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFV 523 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i 523 (784)
..++|.|||||||||+++.||+.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34899999999999999999999987554
No 362
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.69 E-value=0.0085 Score=57.95 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=59.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCcEEEE---ecc------cchhcc-----------cCc------chHHHHHHHH
Q 042193 497 VLFYGPPGCGKTLLAKAIANEC---QANFVSV---KGP------ELLTMW-----------FGE------SEANVREIFD 547 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~---~~~~i~v---~~~------~l~~~~-----------~g~------~~~~i~~~f~ 547 (784)
+++|+++|.||||+|-.+|-.. |..+..+ ++. +++... .-. .+......++
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~ 110 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQ 110 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHH
Confidence 8999999999999999998764 5666665 331 222222 101 1234555666
Q ss_pred Hhhh----CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCCC
Q 042193 548 KARQ----SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 609 (784)
Q Consensus 548 ~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~~ 609 (784)
.++. ...++|++||+-.....+-. . ..+++..+..-. .+.-||.|+|.+
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l-------~----~~ev~~~l~~Rp--~~~~vIlTGr~a 163 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYL-------P----LEEVISALNARP--GHQTVIITGRGC 163 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSS-------C----HHHHHHHHHTSC--TTCEEEEECSSC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCC-------C----HHHHHHHHHhCc--CCCEEEEECCCC
Confidence 5554 34789999999775543211 1 134555555432 344566676653
No 363
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.68 E-value=0.0014 Score=68.48 Aligned_cols=114 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred cccCCCceeEEEcCCCCChhHHHHHHHHHh----CCcEEEEecccchhcccCc---------------------------
Q 042193 489 FGLSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFVSVKGPELLTMWFGE--------------------------- 537 (784)
Q Consensus 489 ~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~--------------------------- 537 (784)
.++.+..-++|.||||+|||||++.+|... +.+++.++...-.......
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFD 109 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHH
Q ss_pred ------------------chHHHHHHHHHh----hhCCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCC
Q 042193 538 ------------------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMN 595 (784)
Q Consensus 538 ------------------~~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 595 (784)
....+.++.+.+ ....|.+||+||+..+.. +.........+..++..|..+.
T Consensus 110 ~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~------~~~~~d~~~~~~~i~~~L~~la 183 (296)
T 1cr0_A 110 QWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVS------ASGESDERKMIDNLMTKLKGFA 183 (296)
T ss_dssp HHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC------CCCCCCHHHHHHHHHHHHHHHH
Q ss_pred CCCcEEEEEecCC
Q 042193 596 AKKTVFIIGATNR 608 (784)
Q Consensus 596 ~~~~v~vi~aTn~ 608 (784)
...++.||.+|+.
T Consensus 184 ~~~~~~vi~vsh~ 196 (296)
T 1cr0_A 184 KSTGVVLVVICHL 196 (296)
T ss_dssp HHHCCEEEEEEEC
T ss_pred HHhCCeEEEEEec
No 364
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.67 E-value=0.0015 Score=69.29 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=65.2
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh---------------C----CcEEEEecccch-hc----c---cC------
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC---------------Q----ANFVSVKGPELL-TM----W---FG------ 536 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------------~----~~~i~v~~~~l~-~~----~---~g------ 536 (784)
|+++..-++|+||||+|||+++..+|... + .++++++...-+ .. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55555559999999999999999998763 2 466777765421 00 0 01
Q ss_pred ----------cchH---HHHHHHHHhhh-CCCeEEEEeccchhhhhcCCCCCCCCCchH--HHHHHHHHHhhCCCCCCcE
Q 042193 537 ----------ESEA---NVREIFDKARQ-SAPCVLFFDELDSIATQRGASVGDAGGAAD--RVLNQLLTEMDGMNAKKTV 600 (784)
Q Consensus 537 ----------~~~~---~i~~~f~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~--~~l~~ll~~ld~~~~~~~v 600 (784)
..+. .+..+.+..+. ..+.++|||.+..+....... .+...+ ..+.+++..|..+....++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~---~~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG---RGKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC---TTSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0111 12233344444 568899999999987531110 011122 2456666666655444445
Q ss_pred EEEEec
Q 042193 601 FIIGAT 606 (784)
Q Consensus 601 ~vi~aT 606 (784)
.||.+.
T Consensus 251 ~vi~~n 256 (322)
T 2i1q_A 251 VVLVTN 256 (322)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 555553
No 365
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.65 E-value=0.00095 Score=63.84 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=22.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-HhC
Q 042193 221 PKGILLYGPPGTGKTLIARAVAN-ETG 246 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~-~l~ 246 (784)
+..|+|.|+|||||||+++.|+. .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 35689999999999999999998 444
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.65 E-value=0.00091 Score=66.64 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=24.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.+++.+.|+||+|+|||||++.|++.++
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456778899999999999999999999873
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.0012 Score=62.76 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
..|+|+|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999876543
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.65 E-value=0.00081 Score=71.48 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=49.8
Q ss_pred CCceeEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccchh-----c---ccCcchHHHHHHHHHhhhCCCeEEEEecc
Q 042193 493 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPELLT-----M---WFGESEANVREIFDKARQSAPCVLFFDEL 562 (784)
Q Consensus 493 ~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l~~-----~---~~g~~~~~i~~~f~~a~~~~p~vl~iDEi 562 (784)
+...+++.||+|+|||||++++++... ...+.+.+..... . ++.......+..+..+-...|.++++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 334599999999999999999999864 4567776643211 1 12002334566677777788999999997
Q ss_pred c
Q 042193 563 D 563 (784)
Q Consensus 563 d 563 (784)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 4
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.64 E-value=0.0009 Score=64.28 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=23.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999988765
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.64 E-value=0.0012 Score=62.51 Aligned_cols=28 Identities=39% Similarity=0.637 Sum_probs=24.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.|+|+|||||||||+++.| ..++..++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5899999999999999999 888877554
No 371
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.63 E-value=0.0013 Score=62.46 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=26.5
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
-++|.|+|||||||+++.|+..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 378999999999999999999999877543
No 372
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.62 E-value=0.0012 Score=63.80 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 373
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0039 Score=62.95 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=28.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH----hCCcEEEEe
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANE----TGAFFFLIN 253 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~----l~~~~~~v~ 253 (784)
|+.++.-++|+|+||+|||+++..++.. .+...++++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 5778889999999999999999876533 245555554
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.61 E-value=0.0016 Score=62.90 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457999999999999999999999986544
No 375
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.61 E-value=0.0012 Score=68.90 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=28.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
++.+++++.+.|+||+|||||||+++|++.+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4678889999999999999999999999988
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.61 E-value=0.0013 Score=65.86 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.+..|+|.|+|||||||+++.|+..++..++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 45679999999999999999999999876543
No 377
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.61 E-value=0.0025 Score=72.98 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l 245 (784)
...++|+|||||||||++..++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998764
No 378
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.60 E-value=0.0013 Score=62.77 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=26.3
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
.++|.|+|||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987764
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.60 E-value=0.0013 Score=70.16 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=32.3
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEeccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPE 529 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~ 529 (784)
.++.+++....| +.|.||+|||||||+++||+... ..-+.+++.+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 444555555555 88999999999999999999753 3445555433
No 380
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.59 E-value=0.0039 Score=65.47 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=30.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLINGP 255 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~ 255 (784)
+..|+|+||+||||||+++.||+.++..++.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34799999999999999999999999777776543
No 381
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.58 E-value=0.0017 Score=65.80 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
++..|+|.|||||||||+++.|+..++..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 56789999999999999999999999865543
No 382
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.58 E-value=0.0011 Score=65.11 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.++..+.|+|||||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567789999999999999999999987
No 383
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.003 Score=72.61 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Q 042193 222 KGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l 245 (784)
+-+.|.||+|+|||||+++|++.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999876
No 384
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.0024 Score=63.63 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=42.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCcEEEEeccc-------chhcccCcc-----hHHHHHHHHHhhh----CCCeEE
Q 042193 497 VLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPE-------LLTMWFGES-----EANVREIFDKARQ----SAPCVL 557 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~-------l~~~~~g~~-----~~~i~~~f~~a~~----~~p~vl 557 (784)
++++||+|+||||++..++..+ +...+.++... +.+. .|.. -.....+++.+.. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7788999999999888887764 45566554221 2111 1211 0112345555554 347899
Q ss_pred EEeccchh
Q 042193 558 FFDELDSI 565 (784)
Q Consensus 558 ~iDEid~l 565 (784)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999875
No 385
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.57 E-value=0.013 Score=66.04 Aligned_cols=73 Identities=14% Similarity=0.278 Sum_probs=49.1
Q ss_pred eEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCC--CCCHHHHhcCCcceEEEeCCCCHHH
Q 042193 282 SIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNRPN--SIDPALRRFGRFDREIDIGVPDEVG 359 (784)
Q Consensus 282 ~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~~~--~ld~al~r~~rf~~~i~i~~p~~~~ 359 (784)
-+++|||++.+..... ..+...|..++.. .....|-+|.+|.+|. .++..++. -|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~-GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQK-ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHH-CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHH-HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 5789999988764321 1222333333322 2345788888888887 78888887 677888898888877
Q ss_pred HHHHH
Q 042193 360 RLEVF 364 (784)
Q Consensus 360 R~~il 364 (784)
...||
T Consensus 415 sr~IL 419 (574)
T 2iut_A 415 SRTIL 419 (574)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76666
No 386
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.56 E-value=0.0014 Score=62.86 Aligned_cols=31 Identities=32% Similarity=0.641 Sum_probs=27.2
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
+..++|.|+||+||||+++.++..++..++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3459999999999999999999999877764
No 387
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.56 E-value=0.009 Score=65.48 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhh----------h---------h-hcchhHHHHHHHHHHH
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----------S---------K-LAGESESNLRKAFEEA 276 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l~----------~---------~-~~g~~~~~l~~vf~~a 276 (784)
++..|+++|++|+||||++..||..+ +..+..+.+.... . . ........+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998765 4555555542110 0 0 0112333456677777
Q ss_pred HhcCCeEEEeehhh
Q 042193 277 EKNAPSIIFIDEID 290 (784)
Q Consensus 277 ~~~~p~il~iDEid 290 (784)
....+.++++|..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778999999763
No 388
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.55 E-value=0.0016 Score=63.43 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999986544
No 389
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.0015 Score=62.88 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+++-+.|+||||+|||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999999765
No 390
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.54 E-value=0.017 Score=72.57 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=89.7
Q ss_pred cccchhhhhhhhccccccccCChhhhhhcccCCCceeEEEcCCCCChhHHHHHHHHHh---C----CcEEEEecccc---
Q 042193 461 DIGGLETVKRELQETVQYPVEHPEKFEKFGLSPSKGVLFYGPPGCGKTLLAKAIANEC---Q----ANFVSVKGPEL--- 530 (784)
Q Consensus 461 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~----~~~i~v~~~~l--- 530 (784)
...|-+...+.|.+.+... -...+-+.|+|+.|+|||+||+.+++.. . ...+.++.+..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred eeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 3566666666666654321 0123348899999999999999987652 1 22334443221
Q ss_pred --h-------hc---------ccCcchHHHHHHHHHhhhC--CCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHH
Q 042193 531 --L-------TM---------WFGESEANVREIFDKARQS--APCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTE 590 (784)
Q Consensus 531 --~-------~~---------~~g~~~~~i~~~f~~a~~~--~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 590 (784)
. .. ........+...+...-.. .+.+||||+++... .
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-----------------------~ 250 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-----------------------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----------------------H
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----------------------H
Confidence 0 00 0011122233333333222 36899999987521 1
Q ss_pred hhCCCCCCcEEEEEecCCCCCCCccccCCCCcccccccCC-CCHHHHHHHHHHHhccCCCCCccCHHHHHHHcCCCC
Q 042193 591 MDGMNAKKTVFIIGATNRPDVIDPALLRPGRLDQLIYIPL-PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFS 666 (784)
Q Consensus 591 ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s 666 (784)
++.+. .+.-||.||..+...... . .....+.+++ .+.++-.++|........-........+++.+.|..
T Consensus 251 ~~~~~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 251 LKAFD--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp HTTTC--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HHhhc--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 22222 223566677655433211 1 2234566765 788888888887774433222234677888888754
No 391
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.53 E-value=0.0017 Score=64.68 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
..|.|+|||||||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999886544
No 392
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.53 E-value=0.0013 Score=63.42 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=25.7
Q ss_pred ceeEEEcCCCCChhHHHHHHHHH-hCCcEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANE-CQANFVS 524 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~-~~~~~i~ 524 (784)
..++|+|+|||||||+++.|+.. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34999999999999999999998 6766654
No 393
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.53 E-value=0.002 Score=74.10 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.++..+.|.||+|+|||||+++|++.+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678889999999999999999999875
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.53 E-value=0.0019 Score=64.86 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999865543
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.53 E-value=0.0019 Score=61.06 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999876553
No 396
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.52 E-value=0.0014 Score=64.69 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567788899999999999999999999875
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.52 E-value=0.0017 Score=64.37 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLI 252 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v 252 (784)
.|+|+|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999988765543
No 398
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.52 E-value=0.0015 Score=68.38 Aligned_cols=44 Identities=16% Similarity=0.443 Sum_probs=32.4
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGP 528 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~ 528 (784)
.++.+++..+.| +.|.||+|+|||||+++|++... .+-|.+++.
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~ 116 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCE
Confidence 455556665555 99999999999999999999763 234555443
No 399
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.51 E-value=0.011 Score=62.23 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLING 254 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~ 254 (784)
|+.++.-++|.|+||+|||+++..+|... +.+.++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68889999999999999999999988654 345555553
No 400
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.51 E-value=0.0017 Score=64.34 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLI 252 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v 252 (784)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998765543
No 401
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.49 E-value=0.0016 Score=66.50 Aligned_cols=32 Identities=38% Similarity=0.424 Sum_probs=28.2
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEEec
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSVKG 527 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~ 527 (784)
-++|.|||||||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999988776654
No 402
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0022 Score=72.80 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.++..+.|.||+|||||||+++|++.+.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45788899999999999999999998753
No 403
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.49 E-value=0.002 Score=63.02 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4569999999999999999999998865443
No 404
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.49 E-value=0.029 Score=64.00 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=88.5
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHH----HhCCcE---EEEechh-----h
Q 042193 190 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN----ETGAFF---FLINGPE-----I 257 (784)
Q Consensus 190 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~----~l~~~~---~~v~~~~-----l 257 (784)
.|.+..+++|.+++... +-.....|.|+|+.|+||||||+.+++ .....| +.++.+. .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999998877421 112346799999999999999999997 333222 3333222 1
Q ss_pred ---h----hhhcc------------hhHHHHHHHHHHHHhcC-CeEEEeehhhhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 042193 258 ---M----SKLAG------------ESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDG 317 (784)
Q Consensus 258 ---~----~~~~g------------~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 317 (784)
. ..... .....+...+....... +.+|++|+++... ++ .+...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~-~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI-RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh-ccccc
Confidence 0 00000 01122334444444554 7899999986421 11 11111
Q ss_pred cccCCcEEEEEEcCCCCCCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHHHcCCCcccc--hhhhHHHHhcCCCc
Q 042193 318 LKSRAHVVVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVFRIHTKNMKLAED--VDLERVARDTHGYV 390 (784)
Q Consensus 318 ~~~~~~vivI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~~~~~--~~l~~la~~t~g~~ 390 (784)
. +..||.||.... +. ...+.....+.+...+.++-.+++..+........+ ....++++.+.|..
T Consensus 264 ---~-gs~ilvTTR~~~-v~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ---L-RLRCLVTTRDVE-IS---NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ---T-TCEEEEEESBGG-GG---GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ---C-CCEEEEEcCCHH-HH---HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 1 223444555421 11 111113355788899999888888876433221011 12345566666553
No 405
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.49 E-value=0.0035 Score=78.96 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=35.0
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
.+++++++.++| +.|+||+|+|||||+++|.+... .+-|.+++-++
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh
Confidence 466666665555 99999999999999999998753 45666666544
No 406
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.49 E-value=0.028 Score=55.57 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.0
Q ss_pred eeEEEcCCCCChhHHHHHHHHHh---CCcEEEEec
Q 042193 496 GVLFYGPPGCGKTLLAKAIANEC---QANFVSVKG 527 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~ 527 (784)
.+++.|+||+||||++-.+|..+ |..++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 48999999999999999998764 555554443
No 407
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.48 E-value=0.0015 Score=75.39 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 215 SIGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 215 ~l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
++.+++++.+.|+||+|+|||||++.|++.+..
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 345678889999999999999999999987643
No 408
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.48 E-value=0.0042 Score=74.61 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHH
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVAN 243 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~ 243 (784)
+..++.++|+||+|+||||++|.++.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999953
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.48 E-value=0.0018 Score=63.72 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=27.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 258 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l~ 258 (784)
.|+|.|||||||+|.|+.|++.++... ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999998764 4444554
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.48 E-value=0.0018 Score=69.71 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=30.4
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEec
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKG 527 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~ 527 (784)
.++.+++....| +.|.||+|||||||+++||+... ..-+.+++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECC
Confidence 344445555555 88999999999999999999753 23444443
No 411
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.47 E-value=0.053 Score=57.61 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=84.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CC-c--EEEEechhhhhhhcchhHHHHHHHHHH----HHhcCCeEEEeehhh
Q 042193 221 PKGILLYGPPGTGKTLIARAVANET---GA-F--FFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEID 290 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l---~~-~--~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid 290 (784)
...+||+||+|.||++.++.+++.+ +. . .+.+++. ..++.+++. +......++++||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 4579999999999999999998865 21 1 1222210 123333333 333456799999998
Q ss_pred h-hcCCCCCCchHHHHHHHHHHHHHhhccccCCcEEEEEEcCC-----CCCCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 042193 291 S-IAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVVVMGATNR-----PNSIDPALRRFGRFDREIDIGVPDEVGRLEVF 364 (784)
Q Consensus 291 ~-l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~atn~-----~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il 364 (784)
. +... ..+.|+..++.... ..++|+.+++. ...+-+++.. |. ..+.+..++..+....+
T Consensus 87 ~kl~~~-----------~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPNAA-----------INEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCCTT-----------HHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCChH-----------HHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 7 5321 23557777765432 33444444331 1234456554 33 45788899888888888
Q ss_pred HHHHcCCCcc-cchhhhHHHHhcCC
Q 042193 365 RIHTKNMKLA-EDVDLERVARDTHG 388 (784)
Q Consensus 365 ~~~~~~~~~~-~~~~l~~la~~t~g 388 (784)
+..++...+. ++..+..++..+.|
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch
Confidence 7776554432 22335666666655
No 412
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.47 E-value=0.0065 Score=65.77 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=28.0
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHh
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 518 (784)
.++.+++....| +.|.||+|||||||+++|++..
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455666666666 8999999999999999999864
No 413
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.46 E-value=0.01 Score=65.04 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=47.3
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccch-------------------hcccC-cchHHHHHHHHHhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELL-------------------TMWFG-ESEANVREIFDKAR 550 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~-------------------~~~~g-~~~~~i~~~f~~a~ 550 (784)
+.-+++.|++|+||||++..||..+ +..+..+.+.-.. ....+ .....++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999765 4556656543221 00011 12333456677777
Q ss_pred hCCCeEEEEeccch
Q 042193 551 QSAPCVLFFDELDS 564 (784)
Q Consensus 551 ~~~p~vl~iDEid~ 564 (784)
...+.++++|..-.
T Consensus 180 ~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 180 SKGVDIIIVDTAGR 193 (443)
T ss_dssp HTTCSEEEEECCCC
T ss_pred hCCCCEEEEECCCc
Confidence 77778999998643
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.46 E-value=0.0014 Score=65.21 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=26.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
.+..|+|.|||||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3457999999999999999999999986443
No 415
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.46 E-value=0.0062 Score=66.74 Aligned_cols=71 Identities=25% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh----------hhhh---------cc-hhHHHHHHHHHHH
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI----------MSKL---------AG-ESESNLRKAFEEA 276 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~l----------~~~~---------~g-~~~~~l~~vf~~a 276 (784)
++..++++||+|+||||++..||..+ +..+..+.+... .... .+ .........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46679999999999999999998766 555555553210 0000 00 1122234455556
Q ss_pred HhcCCeEEEeehhh
Q 042193 277 EKNAPSIIFIDEID 290 (784)
Q Consensus 277 ~~~~p~il~iDEid 290 (784)
....+.++++|...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 55678999999864
No 416
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.46 E-value=0.009 Score=66.24 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET----GAFFFLING 254 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l----~~~~~~v~~ 254 (784)
|+.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888999999999999999999888653 345666554
No 417
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.46 E-value=0.0017 Score=65.94 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
.+.++.-+.|.||+|||||||++.|++.++.
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4456677999999999999999999998764
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.46 E-value=0.0018 Score=64.33 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=27.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFFLI 252 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~~v 252 (784)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35699999999999999999999998765543
No 419
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.45 E-value=0.0017 Score=63.58 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.7
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccc
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPEL 530 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l 530 (784)
+.-+.|.||+||||||++++|++.+ +...+.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3448899999999999999999987 444446666554
No 420
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.42 E-value=0.0021 Score=61.88 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=26.3
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
-++|.|+|||||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 38999999999999999999999988764
No 421
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.41 E-value=0.0022 Score=65.10 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..++|.|||||||||+++.|+..++....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 578999999999999999999998876543
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.013 Score=59.09 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=28.5
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHH----hCCcEEEEec
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANE----CQANFVSVKG 527 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~----~~~~~i~v~~ 527 (784)
|+++..-++++|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666666999999999999999877643 3556666654
No 423
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.40 E-value=0.0044 Score=69.06 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=54.4
Q ss_pred eeEEEcCCCCChhHHHHHHHHHh---CC-cEEEEecccc----hhcccCcchHHHHHHHHHh----------------hh
Q 042193 496 GVLFYGPPGCGKTLLAKAIANEC---QA-NFVSVKGPEL----LTMWFGESEANVREIFDKA----------------RQ 551 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~---~~-~~i~v~~~~l----~~~~~g~~~~~i~~~f~~a----------------~~ 551 (784)
.++|.|+||||||+++.+++..+ +. .++.+....- +....+.....+..++... ..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 68999999999999999998765 33 3333332211 1111111122233333210 11
Q ss_pred CCCeEEEEeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 552 SAPCVLFFDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 552 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
....++++||+..+. ...+..|+..+. ...+++++|-.+.
T Consensus 127 ~~~~~iiiDE~~~~~--------------~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMYD--------------RKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGCC--------------HHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cCCCEEEEECchhCC--------------HHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 234699999997642 334555555543 4557888886655
No 424
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.40 E-value=0.0023 Score=65.17 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
++..|.|.||+||||||+++.|++.++..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4567999999999999999999999987544
No 425
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.39 E-value=0.011 Score=59.59 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=26.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFFLING 254 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~ 254 (784)
..++++||+|+|||.++..++..++...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 358999999999999999998888766655543
No 426
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.39 E-value=0.0019 Score=63.77 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
.++..+.|.||+|||||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4677899999999999999999999875
No 427
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.0053 Score=62.80 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=30.4
Q ss_pred ceeEEEcCCCCChhHHHHHHHHH---hCCcEEEEecccch
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANE---CQANFVSVKGPELL 531 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~---~~~~~i~v~~~~l~ 531 (784)
.-++|.|+||+||||+++.|+.. .+..++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 34899999999999999999997 67777766665544
No 428
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.38 E-value=0.0023 Score=60.61 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.2
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
.++|.|++||||||+++.||..++.+++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999888653
No 429
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.37 E-value=0.011 Score=57.80 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=15.6
Q ss_pred ceeEEEcCCCCChhHHHHH
Q 042193 495 KGVLFYGPPGCGKTLLAKA 513 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~ 513 (784)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4599999999999986443
No 430
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.37 E-value=0.0021 Score=62.10 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Q 042193 223 GILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~ 246 (784)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999886
No 431
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.37 E-value=0.0062 Score=61.38 Aligned_cols=33 Identities=30% Similarity=0.223 Sum_probs=27.5
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEEecc
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSVKGP 528 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~ 528 (784)
.+++.||+|+|||.++.+++...+...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887666666544
No 432
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.35 E-value=0.0037 Score=71.87 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=34.4
Q ss_pred hhhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEeccc
Q 042193 484 EKFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPE 529 (784)
Q Consensus 484 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~ 529 (784)
..++++++..++| +.+.||+|+|||||++++++... .+-+.+++.+
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 4566667666666 89999999999999999999764 3455555543
No 433
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.35 E-value=0.0027 Score=62.15 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=27.7
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
.-++|.||||+||||+++.|++.++. +.+++.++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 44889999999999999999999864 45556554
No 434
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.34 E-value=0.0018 Score=63.43 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+++.+.|+||+|+|||||++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 466799999999999999999999774
No 435
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.33 E-value=0.0026 Score=79.86 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=34.9
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
.++++++..++| +.|+||+|+|||||+++|++... .+-+.+++.++
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCT
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEc
Confidence 566667666666 99999999999999999999754 34555655544
No 436
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0025 Score=63.16 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=31.0
Q ss_pred cCCCceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccchh
Q 042193 491 LSPSKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPELLT 532 (784)
Q Consensus 491 ~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~~ 532 (784)
++.++-++|.||||+||+|.|+.|+..++.+. ++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 34455688999999999999999999997654 55555553
No 437
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.32 E-value=0.0026 Score=62.08 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
.|.|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5889999999999999999999987554
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.30 E-value=0.003 Score=63.29 Aligned_cols=30 Identities=33% Similarity=0.603 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
+..+.|.|||||||||+++.|++.++..++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999986543
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.30 E-value=0.003 Score=66.33 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=30.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
..++|.||+|||||++++.||..++..++.++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 358999999999999999999999988887765443
No 440
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.30 E-value=0.0015 Score=66.94 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
+.+.++..+.|.||+|||||||+++|++.+..
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44567888999999999999999999987654
No 441
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.29 E-value=0.0025 Score=60.29 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=24.9
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
-++|.|||||||||+++.| ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8888776653
No 442
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.29 E-value=0.0024 Score=61.39 Aligned_cols=28 Identities=39% Similarity=0.647 Sum_probs=24.9
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFV 523 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i 523 (784)
-++|.|+|||||||+++.|+..++.+++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3899999999999999999999886654
No 443
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0052 Score=59.17 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=29.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechh
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE 256 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~---~~~~~v~~~~ 256 (784)
.++..|+|.|+|||||||+++.|+..++ ..+..+++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 4567799999999999999999998874 3344555433
No 444
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0032 Score=60.87 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 042193 223 GILLYGPPGTGKTLIARAVANET---GAFFFLIN 253 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l---~~~~~~v~ 253 (784)
.|+|.|+|||||||+++.|++.+ +..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 77766654
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.28 E-value=0.0028 Score=60.17 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=26.1
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
-++|.|+|||||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999987654
No 446
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.27 E-value=0.0031 Score=61.66 Aligned_cols=30 Identities=30% Similarity=0.624 Sum_probs=26.2
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
.-++|.|+||+||||+++.|+..++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 458999999999999999999999866554
No 447
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.27 E-value=0.0017 Score=73.11 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEechhhhh-h---h--------cchhHHHHHHHHHHHHhcCCeEE
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMS-K---L--------AGESESNLRKAFEEAEKNAPSII 284 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~~~l~~-~---~--------~g~~~~~l~~vf~~a~~~~p~il 284 (784)
..+.+++|+||+||||||+++++++.+.. ..+.+.+..... . + .+.....+...+..+..+.|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 45778999999999999999999998753 356665543111 0 0 00111123445566667899999
Q ss_pred Eeehh
Q 042193 285 FIDEI 289 (784)
Q Consensus 285 ~iDEi 289 (784)
++.|+
T Consensus 338 ivgEi 342 (511)
T 2oap_1 338 IVGEV 342 (511)
T ss_dssp EESCC
T ss_pred EeCCc
Confidence 99996
No 448
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.27 E-value=0.0031 Score=61.67 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET-GAFFFLIN 253 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l-~~~~~~v~ 253 (784)
.+..|.|.|++||||||+++.|+..+ +..++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999988 45555543
No 449
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.27 E-value=0.0032 Score=59.95 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=26.9
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
-++|.||||+||||+++.|++.++..+ +++.++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 488999999999999999999887544 455544
No 450
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.27 E-value=0.0023 Score=63.11 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
++.-+.|+||+|+||||+++.|++.++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4667999999999999999999998754
No 451
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.26 E-value=0.0052 Score=68.36 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=29.5
Q ss_pred ccCCCceeEEEcCCCCChhHHHHHHHHHh----CCcEEEEec
Q 042193 490 GLSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFVSVKG 527 (784)
Q Consensus 490 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~i~v~~ 527 (784)
|+.+..-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56665569999999999999999988753 446666654
No 452
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.26 E-value=0.0028 Score=62.70 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48999999999999999999999866544
No 453
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.26 E-value=0.0025 Score=62.37 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFL 251 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~ 251 (784)
.|.|+|++||||||+++.|++ ++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 589999999999999999999 7755443
No 454
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.26 E-value=0.0037 Score=68.45 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=43.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC---cEEEEechhhhhh--------hcchhHHHHHHHHHHHHhcCCeEEEeeh
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIMSK--------LAGESESNLRKAFEEAEKNAPSIIFIDE 288 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l~~---~~~~v~~~~l~~~--------~~g~~~~~l~~vf~~a~~~~p~il~iDE 288 (784)
++..++|+||+||||||+++++++.++. .++.+ +..+-.. ............+..+..+.|.++++.|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~-ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV-EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE-ESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe-cccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 4556999999999999999999998853 23333 2221100 0001111233444556667899999988
Q ss_pred hh
Q 042193 289 ID 290 (784)
Q Consensus 289 id 290 (784)
+.
T Consensus 245 iR 246 (418)
T 1p9r_A 245 IR 246 (418)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.25 E-value=0.003 Score=62.41 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEechhh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEI 257 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~----~~~~~v~~~~l 257 (784)
+.++..|+|.|+|||||||+++.|++.++ ..++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45677899999999999999999998775 34666765443
No 456
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.24 E-value=0.0029 Score=62.26 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=27.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEEEecccch
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVSVKGPELL 531 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l~ 531 (784)
++|.||||+||+|.|+.||...+.+. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 68999999999999999999998655 4555554
No 457
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.24 E-value=0.0013 Score=66.79 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567888899999999999999999998764
No 458
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.24 E-value=0.002 Score=65.45 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=27.0
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
..+.|.|++|+||||+++.||..++.+++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 349999999999999999999999987765
No 459
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0028 Score=62.25 Aligned_cols=28 Identities=21% Similarity=0.092 Sum_probs=25.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc
Q 042193 221 PKGILLYGPPGTGKTLIARAVANETGAF 248 (784)
Q Consensus 221 ~~~vLL~GppGtGKTtla~~la~~l~~~ 248 (784)
+..|+|.|+|||||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4579999999999999999999998763
No 460
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.23 E-value=0.011 Score=61.66 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 042193 220 PPKGILLYGPPGTGKTLIARAVANET----GAFFFLING 254 (784)
Q Consensus 220 ~~~~vLL~GppGtGKTtla~~la~~l----~~~~~~v~~ 254 (784)
++..++|+||+|+||||++..||..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46789999999999999999999875 334555543
No 461
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0033 Score=62.44 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=26.8
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
.-++|.|+|||||||+++.||..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3489999999999999999999998766543
No 462
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.23 E-value=0.0035 Score=61.23 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=26.5
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
-++|.|+|||||||+++.|+..++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 489999999999999999999998876543
No 463
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.23 E-value=0.0031 Score=61.16 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=27.3
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
+.-++|.|+|||||||+++.|+..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34589999999999999999999998776543
No 464
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.23 E-value=0.0027 Score=66.04 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=30.3
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEEEecccc
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVSVKGPEL 530 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v~~~~l 530 (784)
+.-++|.||||+||||+++.|+..++..++.|++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3458999999999999999999988656677776544
No 465
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.21 E-value=0.0036 Score=60.41 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.6
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
.-++|.|+|||||||+++.|+..++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4589999999999999999999998766543
No 466
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.21 E-value=0.0028 Score=62.28 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGA 247 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~ 247 (784)
.++..++|+|||||||||+++.|+..++.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 45677999999999999999999998853
No 467
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0023 Score=63.04 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANETGAFFFLIN 253 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~~~v~ 253 (784)
.++..+.|.||+|||||||++.|++.++..+..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45667999999999999999999998873333333
No 468
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.21 E-value=0.0043 Score=70.98 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=54.1
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccch----hcccCcchHHHHHHHHHh---------hhCCCeEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELL----TMWFGESEANVREIFDKA---------RQSAPCVLF 558 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~----~~~~g~~~~~i~~~f~~a---------~~~~p~vl~ 558 (784)
..+++.||||||||+++.+++..+ +.+++.+....-. ....+.....+..++... ......+++
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998754 4455444322111 111111122233332111 112357999
Q ss_pred EeccchhhhhcCCCCCCCCCchHHHHHHHHHHhhCCCCCCcEEEEEecCC
Q 042193 559 FDELDSIATQRGASVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 608 (784)
Q Consensus 559 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vi~aTn~ 608 (784)
+||+..+. ...+..|+. .+....+++++|-.+.
T Consensus 285 IDEasml~--------------~~~~~~Ll~---~~~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG--------------DALMLSLLA---AVPPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC--------------HHHHHHHHT---TSCTTCEEEEEECTTS
T ss_pred EcCccCCC--------------HHHHHHHHH---hCcCCCEEEEEecccc
Confidence 99987642 224444443 3345567888886554
No 469
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.20 E-value=0.0025 Score=59.87 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.9
Q ss_pred cccCCCce--eEEEcCCCCChhHHHHHHHHHh
Q 042193 489 FGLSPSKG--VLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 489 ~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 518 (784)
+++..+.| +.|.||+|+|||||++++++..
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34444455 8899999999999999999987
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.20 E-value=0.0096 Score=74.93 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=35.4
Q ss_pred hhhhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecc
Q 042193 483 PEKFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGP 528 (784)
Q Consensus 483 ~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~ 528 (784)
...++++++..++| +.++||+|+|||||+++|.+... .+-+.+++.
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 34677777776666 99999999999999999999864 345555553
No 471
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0024 Score=62.66 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
.|.|+||+||||||+++.|++ +|..++ ++.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 588999999999999999998 776544 44443
No 472
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.19 E-value=0.0033 Score=62.75 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 223 GILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
.|+|.|+|||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4899999999999999999999986443
No 473
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0034 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.0
Q ss_pred ceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 495 KGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 495 ~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
.-++|.|+|||||||+++.|+..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 348999999999999999999999876643
No 474
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.18 E-value=0.021 Score=55.15 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=40.7
Q ss_pred eEEEcCCCCChh-HHHHHHHHH--hCCcEEEEecccchhcccCcchH------------HHHHHHHHhhhCCCeEEEEec
Q 042193 497 VLFYGPPGCGKT-LLAKAIANE--CQANFVSVKGPELLTMWFGESEA------------NVREIFDKARQSAPCVLFFDE 561 (784)
Q Consensus 497 ~ll~Gp~GtGKT-~la~~la~~--~~~~~i~v~~~~l~~~~~g~~~~------------~i~~~f~~a~~~~p~vl~iDE 561 (784)
.++|||.|+||| .|++++.+. .+..++.++.. +-..|...... ....+++..+ ...+|+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 789999999999 788888774 35677777633 21111100001 1122333333 246999999
Q ss_pred cchh
Q 042193 562 LDSI 565 (784)
Q Consensus 562 id~l 565 (784)
+..+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9997
No 475
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.18 E-value=0.0056 Score=64.87 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLING 254 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~ 254 (784)
|+.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68889999999999999999999998764 455555543
No 476
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.18 E-value=0.0031 Score=60.96 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 257 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~~v~~~~l 257 (784)
..++|+||||+||||+++.|++..+. .+.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 45889999999999999999986543 355666554
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.17 E-value=0.0034 Score=66.55 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=25.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 042193 222 KGILLYGPPGTGKTLIARAVANETGAFFF 250 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~~~~~ 250 (784)
.+++|+|+||+||||++++|++.++..++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~ 53 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYH 53 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 46999999999999999999999876653
No 478
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.17 E-value=0.003 Score=62.83 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
.+++.-+.|+||+|+|||||++.|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35677899999999999999999999876
No 479
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.17 E-value=0.0015 Score=65.55 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=20.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHH-HHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVA-NETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la-~~l~ 246 (784)
+.+.++.-+.|+||+||||||+++.|+ +.++
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 445677889999999999999999999 8764
No 480
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.16 E-value=0.004 Score=60.41 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 042193 223 GILLYGPPGTGKTLIARAVANET---GAFFFLIN 253 (784)
Q Consensus 223 ~vLL~GppGtGKTtla~~la~~l---~~~~~~v~ 253 (784)
-|.|.|++||||||+++.|+..+ +..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 87776553
No 481
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.012 Score=64.41 Aligned_cols=71 Identities=14% Similarity=0.044 Sum_probs=44.1
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccch----------hc------cc---Cc-chHHHHHHHHHhh
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPELL----------TM------WF---GE-SEANVREIFDKAR 550 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l~----------~~------~~---g~-~~~~i~~~f~~a~ 550 (784)
+.-+++.||+|+||||++..||..+ +..+..+.+.-.. .. +. +. ...........+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4458899999999999999999765 5555555533110 00 00 11 1122344555666
Q ss_pred hCCCeEEEEeccch
Q 042193 551 QSAPCVLFFDELDS 564 (784)
Q Consensus 551 ~~~p~vl~iDEid~ 564 (784)
...+.++++|....
T Consensus 177 ~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 177 KNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTCSEEEEEECCC
T ss_pred hcCCCEEEEECCCC
Confidence 56788999998743
No 482
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.15 E-value=0.0025 Score=61.53 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 222 KGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 222 ~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+-+.|.||+|+|||||++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999875
No 483
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.14 E-value=0.0034 Score=62.73 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=26.9
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 494 SKGVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 494 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
+.-++|.|+|||||||+++.|+..++..++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 3458999999999999999999999876654
No 484
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0067 Score=69.78 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=35.5
Q ss_pred hhhhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHhC--CcEEEEecccc
Q 042193 483 PEKFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPEL 530 (784)
Q Consensus 483 ~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~l 530 (784)
...+++++++.+.| +.+.||+|+|||||++++++... .+-+.+++.++
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 34566666666666 99999999999999999999764 34555655443
No 485
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.13 E-value=0.0024 Score=71.87 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=48.6
Q ss_pred CCCceeEEEcCCCCChhHHHHHHHHHhC--CcEEEEeccc-chh---cc--------cCcchHHHHHHHHHhhhCCCeEE
Q 042193 492 SPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFVSVKGPE-LLT---MW--------FGESEANVREIFDKARQSAPCVL 557 (784)
Q Consensus 492 ~~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~i~v~~~~-l~~---~~--------~g~~~~~i~~~f~~a~~~~p~vl 557 (784)
.....+++.||+|+||||+++++++... .+.+.+.++. +.. .+ ++.....+..+...+-.+.|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 3445599999999999999999999864 4667776553 211 00 01112234556666667889999
Q ss_pred EEecc
Q 042193 558 FFDEL 562 (784)
Q Consensus 558 ~iDEi 562 (784)
+++|+
T Consensus 338 ivgEi 342 (511)
T 2oap_1 338 IVGEV 342 (511)
T ss_dssp EESCC
T ss_pred EeCCc
Confidence 99997
No 486
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.12 E-value=0.0019 Score=66.51 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=26.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.+.++..+.|.||+|+|||||+++|++.+
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678889999999999999999999863
No 487
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.12 E-value=0.0035 Score=62.03 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.5
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
++|.||||+||||+++.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998766543
No 488
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.11 E-value=0.0036 Score=61.85 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
++|.|||||||||+++.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998766543
No 489
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.11 E-value=0.0038 Score=58.90 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=25.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 497 VLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 497 ~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
++|.|++||||||+++.|+..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999987764
No 490
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.0037 Score=60.85 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=25.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETG 246 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~ 246 (784)
+....++.+.|+||+|+|||||++.|++..+
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3344567899999999999999999998875
No 491
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.10 E-value=0.004 Score=59.58 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=30.1
Q ss_pred eeEEEcCCCCChhHHHHHHHHHh---CCcEEEEecccc
Q 042193 496 GVLFYGPPGCGKTLLAKAIANEC---QANFVSVKGPEL 530 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~---~~~~i~v~~~~l 530 (784)
-+.|.|++||||||+++.|+..+ +.+++.+++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 38899999999999999999987 888888876544
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.10 E-value=0.02 Score=64.94 Aligned_cols=77 Identities=27% Similarity=0.333 Sum_probs=51.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechh----hhhh---------------hc---------chh
Q 042193 217 GVKPPKGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE----IMSK---------------LA---------GES 265 (784)
Q Consensus 217 ~i~~~~~vLL~GppGtGKTtla~~la~~l---~~~~~~v~~~~----l~~~---------------~~---------g~~ 265 (784)
++.++..++|.||||||||||++.+++.. +...+++...+ +... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67888899999999999999999999875 23344443321 1100 00 012
Q ss_pred HHHHHHHHHHHHhcCCeEEEeehhhhhc
Q 042193 266 ESNLRKAFEEAEKNAPSIIFIDEIDSIA 293 (784)
Q Consensus 266 ~~~l~~vf~~a~~~~p~il~iDEid~l~ 293 (784)
....+.++..+....|.++++|=+..+-
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 3455667777888899999999555443
No 493
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.08 E-value=0.004 Score=61.75 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=26.5
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVSV 525 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~v 525 (784)
.++|.|+|||||||+++.||..++.+++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 489999999999999999999998776653
No 494
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.08 E-value=0.0031 Score=60.42 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=21.9
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFV 523 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i 523 (784)
-++|.|+|||||||+++.|+..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4889999999999999999999998876
No 495
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.08 E-value=0.0031 Score=60.82 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.3
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhC
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQ 519 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~ 519 (784)
-++|.|+||+||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999876
No 496
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.07 E-value=0.0023 Score=68.87 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=48.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEechhhhh-----h---hcc-h-------hHHHHHHHHHHHH
Q 042193 216 IGVKPPKGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMS-----K---LAG-E-------SESNLRKAFEEAE 277 (784)
Q Consensus 216 l~i~~~~~vLL~GppGtGKTtla~~la~~l~~--~~~~v~~~~l~~-----~---~~g-~-------~~~~l~~vf~~a~ 277 (784)
+.+.++..++|+||+|+|||||+++|++.++. ..+.+++..-.. . +.. + ....++..+..+.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 34567889999999999999999999998753 345555421110 0 110 0 1112455666666
Q ss_pred hcCCeEEEeehhh
Q 042193 278 KNAPSIIFIDEID 290 (784)
Q Consensus 278 ~~~p~il~iDEid 290 (784)
...|..++++|+.
T Consensus 250 ~~~pd~~l~~e~r 262 (361)
T 2gza_A 250 RMKPTRILLAELR 262 (361)
T ss_dssp TSCCSEEEESCCC
T ss_pred hcCCCEEEEcCch
Confidence 7788899999863
No 497
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.06 E-value=0.0029 Score=62.89 Aligned_cols=34 Identities=29% Similarity=0.248 Sum_probs=22.3
Q ss_pred hhhhcccCCCce--eEEEcCCCCChhHHHHHHHHHh
Q 042193 485 KFEKFGLSPSKG--VLFYGPPGCGKTLLAKAIANEC 518 (784)
Q Consensus 485 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 518 (784)
.++.+++..+.| +.|.||+|+|||||++.|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344555555555 8899999999999999999987
No 498
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.06 E-value=0.015 Score=68.90 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Q 042193 219 KPPKGILLYGPPGTGKTLIARAVANE 244 (784)
Q Consensus 219 ~~~~~vLL~GppGtGKTtla~~la~~ 244 (784)
.+++.++|+||+|+||||++|.+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34567999999999999999999975
No 499
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.05 E-value=0.0032 Score=61.85 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=24.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 042193 218 VKPPKGILLYGPPGTGKTLIARAVANET 245 (784)
Q Consensus 218 i~~~~~vLL~GppGtGKTtla~~la~~l 245 (784)
+.++..|.|.|+|||||||+++.|++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456679999999999999999999876
No 500
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.04 E-value=0.004 Score=61.98 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=25.6
Q ss_pred eeEEEcCCCCChhHHHHHHHHHhCCcEEE
Q 042193 496 GVLFYGPPGCGKTLLAKAIANECQANFVS 524 (784)
Q Consensus 496 g~ll~Gp~GtGKT~la~~la~~~~~~~i~ 524 (784)
-+.|.||+||||||+++.|++.++.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48999999999999999999999876653
Done!