Query 042194
Match_columns 364
No_of_seqs 161 out of 1745
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 7.4E-58 1.6E-62 485.3 37.3 363 2-364 1090-1470(1470)
2 TIGR00955 3a01204 The Eye Pigm 100.0 7.3E-54 1.6E-58 426.7 34.6 353 2-364 237-617 (617)
3 KOG0065 Pleiotropic drug resis 100.0 1.1E-53 2.3E-58 429.5 26.6 360 1-364 1001-1387(1391)
4 TIGR00956 3a01205 Pleiotropic 100.0 9.7E-53 2.1E-57 447.8 33.0 351 2-362 281-696 (1394)
5 PLN03140 ABC transporter G fam 100.0 7.7E-52 1.7E-56 439.5 33.6 352 2-361 408-790 (1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 2.8E-51 6E-56 436.7 35.7 356 2-364 973-1394(1394)
7 PLN03211 ABC transporter G-25; 100.0 1.5E-51 3.2E-56 410.1 30.9 344 2-360 277-658 (659)
8 KOG0061 Transporter, ABC super 100.0 1.4E-50 3.1E-55 399.0 30.9 351 2-364 241-612 (613)
9 KOG0065 Pleiotropic drug resis 100.0 1.1E-48 2.3E-53 393.5 27.4 353 2-363 332-733 (1391)
10 PF01061 ABC2_membrane: ABC-2 99.8 3.3E-22 7.2E-27 173.4 2.4 194 104-303 1-210 (210)
11 TIGR01291 nodJ ABC-2 type tran 99.8 1.2E-16 2.6E-21 142.7 22.4 227 105-359 6-250 (253)
12 TIGR01247 drrB daunorubicin re 99.7 3.8E-16 8.2E-21 138.3 20.3 215 112-354 1-234 (236)
13 TIGR03861 phenyl_ABC_PedC alco 99.7 5.3E-15 1.1E-19 132.3 22.3 224 103-358 1-250 (253)
14 PRK15066 inner membrane transp 99.7 4.5E-14 9.7E-19 126.5 23.0 235 102-363 6-256 (257)
15 TIGR00025 Mtu_efflux ABC trans 99.6 5.2E-14 1.1E-18 124.2 20.1 208 118-357 2-229 (232)
16 TIGR03062 pip_yhgE_Cterm YhgE/ 99.5 1.1E-13 2.4E-18 120.1 13.2 141 192-360 67-207 (208)
17 COG0842 ABC-type multidrug tra 99.2 2.3E-09 5E-14 97.0 19.2 132 207-362 153-285 (286)
18 TIGR01248 drrC daunorubicin re 99.1 6.6E-10 1.4E-14 91.1 10.9 106 192-299 39-146 (152)
19 COG1682 TagG ABC-type polysacc 99.1 4.5E-08 9.7E-13 87.1 21.9 232 101-362 15-258 (263)
20 PRK15176 Vi polysaccharide exp 98.9 4.3E-07 9.4E-12 81.3 20.9 232 103-363 18-263 (264)
21 TIGR03518 ABC_perm_GldF glidin 98.7 5.4E-06 1.2E-10 73.3 22.4 212 107-358 2-239 (240)
22 PF12679 ABC2_membrane_2: ABC- 98.2 0.00016 3.5E-09 65.3 18.9 101 236-359 170-275 (277)
23 PF12698 ABC2_membrane_3: ABC- 98.1 6.5E-07 1.4E-11 82.9 0.0 132 192-353 209-343 (344)
24 PF06422 PDR_CDR: CDR ABC tran 98.0 1.4E-05 3E-10 60.6 5.4 57 307-363 16-77 (103)
25 COG4587 ABC-type uncharacteriz 97.9 0.0015 3.3E-08 56.2 17.5 232 101-359 3-259 (268)
26 COG1277 NosY ABC-type transpor 97.6 0.031 6.8E-07 50.4 21.5 125 222-360 146-276 (278)
27 PF08370 PDR_assoc: Plant PDR 97.4 0.00053 1.1E-08 46.7 6.1 49 316-364 9-59 (65)
28 PF12051 DUF3533: Protein of u 97.4 0.0052 1.1E-07 58.4 14.5 128 192-348 249-380 (382)
29 PF03379 CcmB: CcmB protein; 97.1 0.025 5.4E-07 49.1 14.9 150 106-265 1-166 (215)
30 COG1511 Predicted membrane pro 96.9 0.0083 1.8E-07 62.2 11.5 129 194-350 627-755 (780)
31 TIGR01190 ccmB heme exporter p 95.9 0.36 7.7E-06 41.6 13.5 146 109-265 1-163 (211)
32 PF06182 ABC2_membrane_6: ABC- 95.6 1.2 2.5E-05 39.0 16.3 82 214-298 104-186 (229)
33 TIGR01257 rim_protein retinal- 93.8 4.6 0.0001 46.7 18.5 81 221-301 728-810 (2272)
34 COG2386 CcmB ABC-type transpor 92.4 4.2 9.1E-05 34.6 12.0 152 104-265 2-169 (221)
35 TIGR03733 lanti_perm_MutG lant 90.7 11 0.00025 33.2 20.1 33 219-251 127-159 (248)
36 COG3559 TnrB3 Putative exporte 89.5 20 0.00043 34.2 14.6 63 224-293 435-497 (536)
37 TIGR01257 rim_protein retinal- 87.4 14 0.00031 42.9 14.6 103 192-296 1728-1842(2272)
38 PF12730 ABC2_membrane_4: ABC- 85.3 21 0.00046 30.0 18.3 36 226-262 139-174 (232)
39 COG1668 NatB ABC-type Na+ effl 81.6 44 0.00095 32.1 13.5 76 223-298 279-360 (407)
40 PF09847 DUF2074: Predicted pe 80.2 55 0.0012 31.9 13.6 41 97-138 241-281 (449)
41 TIGR03061 pip_yhgE_Nterm YhgE/ 69.1 7.8 0.00017 31.8 4.2 33 112-144 1-36 (164)
42 PF10766 DUF2592: Protein of u 60.9 26 0.00057 21.0 4.0 21 122-142 4-24 (41)
43 COG4200 Uncharacterized protei 59.9 1.2E+02 0.0026 26.5 19.5 98 222-361 137-234 (239)
44 PRK11026 ftsX cell division AB 59.3 24 0.00053 32.4 5.9 46 97-142 4-49 (309)
45 PF05393 Hum_adeno_E3A: Human 49.0 37 0.00079 24.5 4.0 31 334-364 33-63 (94)
46 TIGR00439 ftsX putative protei 45.4 49 0.0011 30.4 5.5 46 97-142 4-49 (309)
47 PF13829 DUF4191: Domain of un 44.5 2.1E+02 0.0046 24.9 8.8 45 98-142 5-49 (224)
48 COG4279 Uncharacterized conser 41.7 24 0.00053 30.9 2.7 28 21-49 102-142 (266)
49 TIGR02865 spore_II_E stage II 41.6 1.9E+02 0.0042 30.3 9.8 25 255-279 216-240 (764)
50 PF01102 Glycophorin_A: Glycop 40.8 34 0.00074 26.6 3.2 28 334-361 67-94 (122)
51 COG4325 Predicted membrane pro 40.6 1.9E+02 0.0041 27.4 8.3 63 182-244 114-178 (464)
52 PF02439 Adeno_E3_CR2: Adenovi 40.4 72 0.0016 19.1 3.7 27 336-362 8-34 (38)
53 PF12911 OppC_N: N-terminal TM 32.4 1.4E+02 0.003 19.2 4.7 33 110-142 5-38 (56)
54 PF15203 TMEM95: TMEM95 family 31.0 26 0.00055 27.0 1.0 34 274-307 64-97 (152)
55 COG4607 CeuA ABC-type enteroch 25.6 35 0.00077 30.9 1.1 36 1-48 198-233 (320)
56 PRK00753 psbL photosystem II r 25.0 1.3E+02 0.0029 17.8 3.0 24 120-143 15-38 (39)
57 PF01534 Frizzled: Frizzled/Sm 24.5 2.1E+02 0.0045 26.6 6.0 87 266-362 120-211 (328)
58 KOG0059 Lipid exporter ABCA1 a 24.2 9.1E+02 0.02 25.9 11.5 102 192-295 346-451 (885)
59 PRK13643 cbiO cobalt transport 22.5 52 0.0011 29.8 1.7 39 2-46 214-255 (288)
60 PF15086 UPF0542: Uncharacteri 22.5 1.7E+02 0.0036 20.4 3.6 30 243-272 11-40 (74)
61 PF10905 DUF2695: Protein of u 22.4 51 0.0011 21.5 1.1 20 21-40 33-52 (53)
62 COG4483 Uncharacterized protei 21.3 41 0.00089 22.8 0.6 21 4-28 11-31 (68)
63 PF02009 Rifin_STEVOR: Rifin/s 21.2 87 0.0019 28.6 2.8 26 336-362 260-285 (299)
64 PF02419 PsbL: PsbL protein; 21.1 1.9E+02 0.0042 17.1 3.2 24 120-143 13-36 (37)
65 PF06667 PspB: Phage shock pro 20.7 1.5E+02 0.0032 20.9 3.2 22 342-363 10-31 (75)
66 CHL00038 psbL photosystem II p 20.7 2E+02 0.0044 17.0 3.2 24 120-143 14-37 (38)
67 PTZ00046 rifin; Provisional 20.4 1.1E+02 0.0023 28.7 3.2 29 334-363 317-345 (358)
68 PF05545 FixQ: Cbb3-type cytoc 20.1 1.2E+02 0.0027 19.1 2.6 24 337-360 11-34 (49)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.4e-58 Score=485.35 Aligned_cols=363 Identities=48% Similarity=1.009 Sum_probs=330.3
Q ss_pred ceecc-CCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccccCCCHHHHHhccHhhHHHHHHHH
Q 042194 2 ILLKT-GGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVK 80 (364)
Q Consensus 2 llLl~-~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 80 (364)
+++++ +|+++|+||+++|++++++||++++|+++||++.|||||++|+++.+.+.+..+++++.|++|+.+++..++++
T Consensus 1090 vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~ 1169 (1470)
T PLN03140 1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVK 1169 (1470)
T ss_pred EEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHH
Confidence 35566 59999999999999999999999867745999999999999999876555545689999999999888877777
Q ss_pred hhCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHHHH
Q 042194 81 QLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVG 160 (364)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~g 160 (364)
+.+.+.+..++.....+++++++.|++.+++|.+++.||||.+...++++.+++++++|++|++++++..+.++.+++.|
T Consensus 1170 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g 1249 (1470)
T PLN03140 1170 ELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIG 1249 (1470)
T ss_pred HhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHH
Confidence 66655443333333567889999999999999999999999999999999999999999999999986555678889999
Q ss_pred HHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHH
Q 042194 161 SLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFW 225 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~ 225 (364)
++|+.+++.++....++.+.+..||.+|+|| +++|+|+.++.+++|.+|+|||+|++++++.|+.
T Consensus 1250 ~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~ 1329 (1470)
T PLN03140 1250 AMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFW 1329 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 9999998888877778888999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcC
Q 042194 226 NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGD 305 (364)
Q Consensus 226 ~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~ 305 (364)
+++++++..++++++|+++++++||.+.|+.++++++.++++++|+++|.++||.||+|++|+||++|++++++.|||++
T Consensus 1330 ~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~ 1409 (1470)
T PLN03140 1330 FYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGD 1409 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecC--CCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 306 IDKEIIVFG--ETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 306 ~~~~~~~~~--~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
.+..|+|++ +..++++++++++|++++..|.++++++++.++|++++++++++.+.+||
T Consensus 1410 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1410 VEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999898886 23678999999999999999999999999999999999999999999998
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.3e-54 Score=426.67 Aligned_cols=353 Identities=22% Similarity=0.362 Sum_probs=303.9
Q ss_pred ceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCccccc-----CCCHHHHHhccHhhHHHH
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAEL-----GVDFSQIYRESALYKNNN 76 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~ 76 (364)
++++++|+++|+||+ +++.+||+++ |+ +||++.||+||++|+++.+.++.. .+++.+.|++++.+++..
T Consensus 237 i~ll~~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 310 (617)
T TIGR00955 237 IILMAEGRVAYLGSP----DQAVPFFSDL-GH-PCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDML 310 (617)
T ss_pred EEEeeCCeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHH
Confidence 467899999999999 9999999998 99 999999999999999987654321 124556676666555544
Q ss_pred HHHHhhCCCCC---CCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchh
Q 042194 77 ELVKQLNTPPP---SSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQ 153 (364)
Q Consensus 77 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~ 153 (364)
+..+....... ..........+..+++.|++.+++|.+++.+|||..+..++++.+++++++|.+|++.+. ++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~ 387 (617)
T TIGR00955 311 VNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQK 387 (617)
T ss_pred HHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHH
Confidence 33332111110 111111234567899999999999999999999999999999999999999999999887 567
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhccccccc
Q 042194 154 NLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYG 218 (364)
Q Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~ 218 (364)
+.+++.|++|++++..++.++..++..++.||.++.|| +++++|..++.+++|.+|.||++|+++
T Consensus 388 ~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~ 467 (617)
T TIGR00955 388 GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRS 467 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCc
Confidence 89999999999998888888778888999999999999 789999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHH
Q 042194 219 SAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGM 298 (364)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l 298 (364)
++..|+.+++++++..++++++|.++++++|+...|..+++++..++++++|+++|.+++|.||+|++|+||++|+++++
T Consensus 468 ~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al 547 (617)
T TIGR00955 468 GATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGL 547 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCc-eeeecC---CC-ccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 299 ITSQYGDIDK-EIIVFG---ET-KSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 299 ~~~~f~~~~~-~~~~~~---~~-~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
+.|||.+.++ .|...+ .| .+| +.+++.+|++.++.|.++++|+++.++|+++++++|+++.+++|
T Consensus 548 ~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 548 LINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999998775 564322 24 455 66778899999999999999999999999999999999888876
No 3
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-53 Score=429.50 Aligned_cols=360 Identities=46% Similarity=0.866 Sum_probs=332.8
Q ss_pred CceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccccCCCHHHHHhccHhhHHHHHHHH
Q 042194 1 LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVK 80 (364)
Q Consensus 1 lllLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 80 (364)
|++|-+||++||+||.||||+.+++||+++||. +||+..|||||++|+++...+.+...||++.|++|..+++++++++
T Consensus 1001 LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~ 1079 (1391)
T KOG0065|consen 1001 LLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVK 1079 (1391)
T ss_pred HHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHH
Confidence 578889999999999999999999999999888 9999999999999999998887777899999999999999999999
Q ss_pred hhCCCCCC-CCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHHH
Q 042194 81 QLNTPPPS-SRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIV 159 (364)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~ 159 (364)
+++++.+. +.+...+.++++|++.|++..++|.+...||+|.++.+|+++.++.++++|+.||+++. +.++.+|.+
T Consensus 1080 ~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m 1156 (1391)
T KOG0065|consen 1080 ELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAM 1156 (1391)
T ss_pred HHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHH
Confidence 99988877 56666778899999999999999999999999999999999999999999999999997 679999999
Q ss_pred HHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHH
Q 042194 160 GSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVF 224 (364)
Q Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~ 224 (364)
|++|+.+++..........+.+..||..++|| +++|+|+.++++.+|.++.|+++|+.+++++++
T Consensus 1157 ~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~ 1236 (1391)
T KOG0065|consen 1157 GAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFF 1236 (1391)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHH
Confidence 99999987766554333556667888889999 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhc
Q 042194 225 WNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYG 304 (364)
Q Consensus 225 ~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~ 304 (364)
++++..+++.+++..+|+++.+++||.+.|..+..+++.....|||++.|.+.||.||.|++|+||.+|.+++++..+++
T Consensus 1237 ~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~ 1316 (1391)
T KOG0065|consen 1237 WFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG 1316 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecC-------CCccHHHHHHHhhC----CCCCCccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 305 DIDKEIIVFG-------ETKSLSSFLEDYFG----FHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 305 ~~~~~~~~~~-------~~~~~~~~l~~~~g----~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
+.+..|...+ .+.+++++++.++| +..+.......+.+++.+++..++.+.+++.++.||
T Consensus 1317 d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1317 DVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999997655 44899999999999 777777777888888999999999999999998875
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.7e-53 Score=447.78 Aligned_cols=351 Identities=18% Similarity=0.348 Sum_probs=307.2
Q ss_pred ceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCccc----------ccCCCHHHHHhccHh
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEA----------ELGVDFSQIYRESAL 71 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~----------~~~~~~~~~~~~s~~ 71 (364)
++++++|+++|+||+ +++.+||+++ |+ +||++.|||||++|+++.+.+. ...+++++.|++|+.
T Consensus 281 v~~L~~G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~ 354 (1394)
T TIGR00956 281 VIVLYEGYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPE 354 (1394)
T ss_pred EEEEeCCeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHH
Confidence 567889999999999 8999999999 99 9999999999999998765321 123568899999998
Q ss_pred hHHHHHHHHhhCCCCC---------------CCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHH
Q 042194 72 YKNNNELVKQLNTPPP---------------SSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSL 136 (364)
Q Consensus 72 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~l 136 (364)
+++..+++++.....+ .++.......+..++++|++++++|.+++.+|||..+..++++.+++|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~l 434 (1394)
T TIGR00956 355 YAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMAL 434 (1394)
T ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8877666654321100 0111122345778999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHH
Q 042194 137 LFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLI 201 (364)
Q Consensus 137 l~g~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~ 201 (364)
++|.+|++++. ++++++++.|++|+++++.+++++.. +..+..||.+++|| +++++|..++
T Consensus 435 i~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~-i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~ 510 (1394)
T TIGR00956 435 ILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLE-IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKII 510 (1394)
T ss_pred HHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999987 56789999999999999888887655 45566899999999 8899999999
Q ss_pred HHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 042194 202 QALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNW 281 (364)
Q Consensus 202 ~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~ 281 (364)
.+++|++|+|||.|+++++++|+.+++++++..+++.+++.++++++||...|+.++++++.++++++||++|.++||.|
T Consensus 511 ~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~ 590 (1394)
T TIGR00956 511 ESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGW 590 (1394)
T ss_pred HHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccChHHHHHHHHHHhhhcCCCceeee--c----------------------CCC-ccHHHHHHHhhCCCCCCccc
Q 042194 282 WIWLYYMTPTSWALNGMITSQYGDIDKEIIV--F----------------------GET-KSLSSFLEDYFGFHHDRLPI 336 (364)
Q Consensus 282 ~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~--~----------------------~~~-~~~~~~l~~~~g~~~~~~~~ 336 (364)
|+|++|+||++|++++++.|||++.+++|+. | |.+ ++|.+++...++++.+++|.
T Consensus 591 ~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~ 670 (1394)
T TIGR00956 591 SKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWR 670 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhH
Confidence 9999999999999999999999999988851 1 112 57888898789999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 337 TAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 337 ~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
++++++++.++|++++++++++.++.
T Consensus 671 n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 671 NFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998743
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.7e-52 Score=439.53 Aligned_cols=352 Identities=20% Similarity=0.347 Sum_probs=298.1
Q ss_pred ceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccc------------cCCCHHHHHhcc
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAE------------LGVDFSQIYRES 69 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~------------~~~~~~~~~~~s 69 (364)
++++++|+++|+||+ +++.+||+++ |+ +||++.|||||++|+++.+.+++ ..+++++.|++|
T Consensus 408 vilL~~G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s 481 (1470)
T PLN03140 408 IILLSEGQIVYQGPR----DHILEFFESC-GF-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481 (1470)
T ss_pred EEEeeCceEEEeCCH----HHHHHHHHHc-CC-CCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhc
Confidence 567899999999999 8999999999 99 99999999999999998654311 124578899998
Q ss_pred HhhHHHHHHHHhhCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCc
Q 042194 70 ALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKI 149 (364)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~ 149 (364)
..+++..++++.........+.....+.+..+++.|++.+++|+++..+||+..+..++++.+++|+++|.+|++++.+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~ 561 (1470)
T PLN03140 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561 (1470)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 87776655544211111111111123457889999999999999999999999999999999999999999999997653
Q ss_pred cchhchHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhccc
Q 042194 150 DNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMI 214 (364)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~ 214 (364)
.+..+.+++.|.+|++++..++.++ ..+..+..||.+|+|| +++++|..++.+++|.+|+|||+
T Consensus 562 ~~~~~~~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~ 640 (1470)
T PLN03140 562 RNEEDGALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSI 640 (1470)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Confidence 3334566778999988877777664 4467778999999999 88999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHH
Q 042194 215 GYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWA 294 (364)
Q Consensus 215 g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~ 294 (364)
|+++++++|+.+++++++..+++.+++.++++++++...|+.++++++.++++++||++|.++||+||+|++|+||++|+
T Consensus 641 Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya 720 (1470)
T PLN03140 641 GFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYG 720 (1470)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCce-eeecCCC-ccHHHHHHHhhCCCCCC--ccchhhHHHHHHHHHHHHHHHHHHhccc
Q 042194 295 LNGMITSQYGDIDKE-IIVFGET-KSLSSFLEDYFGFHHDR--LPITAVVLIFYPLVLAFLFAYCIGKLNF 361 (364)
Q Consensus 295 ~~~l~~~~f~~~~~~-~~~~~~~-~~~~~~l~~~~g~~~~~--~~~~~~~L~~~~~~~~~l~~~~l~~~~~ 361 (364)
+++++.|||.+.++. |.|.+++ +.|.+++ +.+|++.++ +|.++++|+++.++|+++++++|++.++
T Consensus 721 ~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 721 FNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred HHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999876644 2333333 5665655 789998765 5899999999999999999999999874
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.8e-51 Score=436.67 Aligned_cols=356 Identities=24% Similarity=0.477 Sum_probs=303.6
Q ss_pred ceeccCC-eEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccccCCCHHHHHhccHhhHHHHHHHH
Q 042194 2 ILLKTGG-RIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVK 80 (364)
Q Consensus 2 llLl~~G-~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 80 (364)
++++++| +++|+|+++++++++++||+++ |+.+||++.|||||++|+++.+.++...+++.+.|++|+.+++..++++
T Consensus 973 vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 1051 (1394)
T TIGR00956 973 LLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELD 1051 (1394)
T ss_pred EEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHH
Confidence 3556665 9999999998889999999998 8448999999999999999876554444689999999988777766666
Q ss_pred hhCCCCCCCC---CCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHH
Q 042194 81 QLNTPPPSSR---DLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFN 157 (364)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~ 157 (364)
+...+..... ......+++++++.|+++|++|.+++.+|||.++..++++.+++|+++|++|+++++ ++.+++|
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~ 1128 (1394)
T TIGR00956 1052 RLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQN 1128 (1394)
T ss_pred HhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHH
Confidence 5543321111 111224678999999999999999999999999999999999999999999999987 5688999
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhhhhh-hHH---------------hhhhhhHHHHHHHHHHhhhhcccccccchh
Q 042194 158 IVGSLYMVVVFLGINNCSSVIPNVARERTVM-YRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAY 221 (364)
Q Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~~~~~er~~~-~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~ 221 (364)
++|++|+.++...+. ..++++.++.||.++ +|| +++|+|+.++.+++|.+++||++|+++++.
T Consensus 1129 ~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~ 1207 (1394)
T TIGR00956 1129 QMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNAS 1207 (1394)
T ss_pred HHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccc
Confidence 999999887766554 456677888888875 899 899999999999999999999999987765
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHH
Q 042194 222 K-------VFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWA 294 (364)
Q Consensus 222 ~-------~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~ 294 (364)
. ++.+++++++..+++.++|+++++++||.+.|..++++++.++++|||+++|.++||.||+|++|+||++|+
T Consensus 1208 ~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~ 1287 (1394)
T TIGR00956 1208 KTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYL 1287 (1394)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCceeeec-------------------------------C---CC-----ccHHHHHHHhhCCCCCCcc
Q 042194 295 LNGMITSQYGDIDKEIIVF-------------------------------G---ET-----KSLSSFLEDYFGFHHDRLP 335 (364)
Q Consensus 295 ~~~l~~~~f~~~~~~~~~~-------------------------------~---~~-----~~~~~~l~~~~g~~~~~~~ 335 (364)
+++++.++|++.+..|... + .| .+|.+++ +.++++.++.|
T Consensus 1288 ~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w 1366 (1394)
T TIGR00956 1288 VQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRW 1366 (1394)
T ss_pred HHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccc
Confidence 9999999999998877431 1 12 3566665 56899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 336 ITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 336 ~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
.|+++++++.+++ +++++++++..+.+|
T Consensus 1367 ~~~~i~~~~~~~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1367 RNFGIFIAFIFFN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred cchhhhhHHHHHH-HHHHHhhheEEEcCC
Confidence 9999999999888 888888887765554
No 7
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-51 Score=410.06 Aligned_cols=344 Identities=19% Similarity=0.310 Sum_probs=274.9
Q ss_pred ceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccc-----cC----CCHHHHHhccHhh
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAE-----LG----VDFSQIYRESALY 72 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~-----~~----~~~~~~~~~s~~~ 72 (364)
++++++|+++|+|++ +++.+||+++ |+ +||++.|||||++|+++.+.+.+ .. +++.+.|++.. .
T Consensus 277 iilL~~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 349 (659)
T PLN03211 277 VLVLSEGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-A 349 (659)
T ss_pred EEEecCCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-c
Confidence 467799999999999 9999999998 99 99999999999999998653211 00 11234454221 1
Q ss_pred HHHHHHHHh--hCC-CCC-----CCCCC-CCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhh
Q 042194 73 KNNNELVKQ--LNT-PPP-----SSRDL-HFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFW 143 (364)
Q Consensus 73 ~~~~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~ 143 (364)
++..+..+. ... ..+ ..+.. .....+.++|++|+++|++|.+++ +||+.....++++.+++|+++|.+|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~ 428 (659)
T PLN03211 350 PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWW 428 (659)
T ss_pred HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111 111 000 00000 011234578999999999999998 89999989999999999999999999
Q ss_pred ccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHh
Q 042194 144 EQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVI 208 (364)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~ 208 (364)
+.+ ..+++++.|++|+++++.++.+.+.+++.++.||.+++|| +++++|+.++.+++|.+
T Consensus 429 ~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~ 503 (659)
T PLN03211 429 HSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLT 503 (659)
T ss_pred cCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 874 3679999999999988888888888899999999999999 89999999999999999
Q ss_pred hhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhcc
Q 042194 209 ISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYM 288 (364)
Q Consensus 209 i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~ 288 (364)
|+|||+|+++++++|+.+++++++..++++++|+++++++||...|+.++++++.+++++||++++ ++|.||+|++|+
T Consensus 504 i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~yl 581 (659)
T PLN03211 504 VTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYI 581 (659)
T ss_pred heeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999987 799999999999
Q ss_pred ChHHHHHHHHHHhhhcCCCc-----eeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcc
Q 042194 289 TPTSWALNGMITSQYGDIDK-----EIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLN 360 (364)
Q Consensus 289 sp~~y~~~~l~~~~f~~~~~-----~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~ 360 (364)
||++|++++++.|||.+.+. +|..+....++.........++..+.|.++++|+++.++|+++++++|++.+
T Consensus 582 S~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 582 STTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999987542 4543211000000011223344556899999999999999999999998765
No 8
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-50 Score=399.00 Aligned_cols=351 Identities=21% Similarity=0.418 Sum_probs=292.7
Q ss_pred ceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccccCCCHHHHHhccHhhH--HHH-HH
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYK--NNN-EL 78 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~-~~ 78 (364)
+++|++|++||+|++ +++++||+++ |+ |||++.||+||++|+++.+++.+..++..+.++....++ +.. +.
T Consensus 241 l~lLs~G~~vy~G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (613)
T KOG0061|consen 241 LLLLSEGEVVYSGSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKT 314 (613)
T ss_pred hhhhcCCcEEEecCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhh
Confidence 567899999999999 9999999999 99 999999999999999997521111111112222111110 000 00
Q ss_pred HHhhCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHH
Q 042194 79 VKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNI 158 (364)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~ 158 (364)
.+....... +..+.+....++|+.|++.+++|.+++.+|||.....++++.+.+++++|.+|++++. +..+.+++
T Consensus 315 ~~~~~~~~~--~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~ 389 (613)
T KOG0061|consen 315 LEALEKSLS--TSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNR 389 (613)
T ss_pred HHHHhhhcc--cccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHH
Confidence 000000000 0011111127899999999999999999999999999999999999999999999977 45677799
Q ss_pred HHHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhcccccccchhHH
Q 042194 159 VGSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKV 223 (364)
Q Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~ 223 (364)
.|+.++....+.+....++++.++.||.++.|| +++++|+.++.+++|.+|+|||.|++++..+|
T Consensus 390 ~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f 469 (613)
T KOG0061|consen 390 LGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRF 469 (613)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHH
Confidence 999999999998888888899999999999999 77999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhh
Q 042194 224 FWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQY 303 (364)
Q Consensus 224 ~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f 303 (364)
..+++++++..++++++|+++++++||...|+.+++++..+++++||++++.+.+|.|++|++|+|+++|++|+++.|+|
T Consensus 470 ~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~ 549 (613)
T KOG0061|consen 470 LYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQF 549 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeecC--CC-ccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 304 GDIDKEIIVFG--ET-KSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 304 ~~~~~~~~~~~--~~-~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
.+....|...+ .| .++.+ .+++.++++.+.|.|+.+++++.++|+++++++|+++.+++|
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 550 SGGSSRCFLSGNLCCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred hccccccccCcCCcccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 98566665432 34 55555 447789999999999999999999999999999999988764
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-48 Score=393.52 Aligned_cols=353 Identities=20% Similarity=0.405 Sum_probs=308.9
Q ss_pred ceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccc-----------cC-CCHHHHHhcc
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAE-----------LG-VDFSQIYRES 69 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~-----------~~-~~~~~~~~~s 69 (364)
++||++|++||+||+ .++++||+++ |+ .||++.++|||+.++++..++.+ .. .++.+.|+++
T Consensus 332 v~lL~eG~~iy~Gp~----d~~~~yFe~~-Gf-~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s 405 (1391)
T KOG0065|consen 332 VILLSEGYQIYQGPR----DEVLPYFEDM-GF-KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNS 405 (1391)
T ss_pred eeeeeccceEEeccH----HHHHHHHHhc-Cc-cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcc
Confidence 578899999999999 8999999999 99 99999999999999999444321 11 5788999999
Q ss_pred HhhHHHHHHHHhhCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCc
Q 042194 70 ALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKI 149 (364)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~ 149 (364)
+.+++...+++........++......++..+.|.|++.+++|++.++.||..+...+.++.+++++++|.+|++.+.
T Consensus 406 ~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~-- 483 (1391)
T KOG0065|consen 406 EDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM-- 483 (1391)
T ss_pred hhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--
Confidence 888877666554333333333444567889999999999999999999999999999999999999999999999982
Q ss_pred cchhchHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhccc
Q 042194 150 DNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMI 214 (364)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~ 214 (364)
.+..+.+.+.|.+|+.+++.++.++... ......|.+++|+ .+.++|..++.+.+|.+|.|+++
T Consensus 484 ~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~ 562 (1391)
T KOG0065|consen 484 STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLI 562 (1391)
T ss_pred cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 2567888999999999988888776554 3333566777776 88999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHH
Q 042194 215 GYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWA 294 (364)
Q Consensus 215 g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~ 294 (364)
|+.+++++|+.+++++++...+..++-.++++++++...|+.++.+.+....+.+||.+|.+.||+|++|++|+||+.|+
T Consensus 563 gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~ 642 (1391)
T KOG0065|consen 563 GLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYA 642 (1391)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCceeee------------c---------CCC-ccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHH
Q 042194 295 LNGMITSQYGDIDKEIIV------------F---------GET-KSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLF 352 (364)
Q Consensus 295 ~~~l~~~~f~~~~~~~~~------------~---------~~~-~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~ 352 (364)
+|+++.|||++.+..|.. . |+. ..|.+++...|+++..++|.+++++++|.++|.++.
T Consensus 643 fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~ 722 (1391)
T KOG0065|consen 643 FESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVF 722 (1391)
T ss_pred HHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHH
Confidence 999999999999999971 1 111 567788888888999999999999999999999999
Q ss_pred HHHHHhccccc
Q 042194 353 AYCIGKLNFLR 363 (364)
Q Consensus 353 ~~~l~~~~~~~ 363 (364)
.+++.+.++.+
T Consensus 723 ~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 723 LIALEYLKPLK 733 (1391)
T ss_pred HHHHHhcCccc
Confidence 99999998754
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=3.3e-22 Score=173.42 Aligned_cols=194 Identities=25% Similarity=0.462 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHHhhccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccchhh
Q 042194 104 GQFKSCLWKLHLSYWRSPSYN-LTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVA 182 (364)
Q Consensus 104 ~q~~~l~~R~~~~~~R~~~~~-~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (364)
+|++++++|++++.+|||... ...++.+++.+++++.++.++++ ..++. ++.+++++.+...++....+......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN---SQDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc---ccccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 99999999999999999998773 23333 56777777776666555555556677
Q ss_pred hhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042194 183 RERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSL 247 (364)
Q Consensus 183 ~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~ 247 (364)
+||+.+.|| .+.+++..++.++++..+.+.+.|++.+ ++..+.+.+++...++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 888888888 6677888888999999999999888766 56778888888899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhh
Q 042194 248 TPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQY 303 (364)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f 303 (364)
+++.+.+..+.+++..+++++||.++|.+.+|+|++|+.+++|++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999987764
No 11
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.77 E-value=1.2e-16 Score=142.68 Aligned_cols=227 Identities=13% Similarity=0.158 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhhccCCCccchh-chHHHHHHHHHHHHHHHHHhhhhccchhh
Q 042194 105 QFKSCLWKLHLSYWRS-PSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQ-NLFNIVGSLYMVVVFLGINNCSSVIPNVA 182 (364)
Q Consensus 105 q~~~l~~R~~~~~~R~-~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (364)
++..+++|++++.+|+ |..++..+++|+++.+++|..+....++..+.+ ..+-..|++-+.++..+.... ....+.
T Consensus 6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~--~~~~~~ 83 (253)
T TIGR01291 6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFET--IYATFA 83 (253)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4677789999999999 999999999999999999999864322111111 111122444443333322111 112333
Q ss_pred hhh--hhhhHH--------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042194 183 RER--TVMYRE--------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVS 246 (364)
Q Consensus 183 ~er--~~~~re--------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~ 246 (364)
+|| ..++|- ++.+....+++.++...+.+ ..|..+ ...+.....+.++..+++.++|.++++
T Consensus 84 ~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIE-WWSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 344444 33333444444444444333 334333 234555556667788888899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHh
Q 042194 247 LTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDY 326 (364)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~ 326 (364)
..++.+.+..+.+.+..|++++||.+.|.+++|+|+|++.+++|++|+.|++-...++
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g---------------------- 219 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG---------------------- 219 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC----------------------
Confidence 9999999999999999999999999999999999999999999999999998444222
Q ss_pred hCCCCCCccchhhHHHHHHHHHHHHHHHHHHhc
Q 042194 327 FGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKL 359 (364)
Q Consensus 327 ~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~ 359 (364)
-+..+.+.+++++.++++++..++...+|++
T Consensus 220 --~~~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 220 --GPGTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112245678889888888888777776654
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.74 E-value=3.8e-16 Score=138.28 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=151.3
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhc----hHHHHHHHHHHHHHHHHHhhhhccchhhhhhhh
Q 042194 112 KLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQN----LFNIVGSLYMVVVFLGINNCSSVIPNVARERTV 187 (364)
Q Consensus 112 R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~~ 187 (364)
|+++...|||..++..+++|+++.++++.++.+.-.++....+ .+-..|.+.+.....+.... ......+|+..
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhCH
Confidence 7888999999999999999999999999988543211100111 12223444433333332211 11112233334
Q ss_pred hhHH--------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 042194 188 MYRE--------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMI 253 (364)
Q Consensus 188 ~~re--------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~ 253 (364)
+.|- .+.+++..+++.++...+.+++.+.+. ..+...++..++...+..++|.+++...+|.+.
T Consensus 79 ~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 79 LKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4432 567777778888888888877766543 234444455666677889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCC-CC
Q 042194 254 ASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFH-HD 332 (364)
Q Consensus 254 a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~ 332 (364)
+..+.+.+..++.++||.++|.+.+|+|+||+++++|.+|+.|++-.... |.. ..
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~------------------------~~~~~~ 212 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA------------------------GVSPTF 212 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh------------------------CCCccc
Confidence 99999999999999999999999999999999999999999999744322 112 23
Q ss_pred CccchhhHHHHHHHHHHHHHHH
Q 042194 333 RLPITAVVLIFYPLVLAFLFAY 354 (364)
Q Consensus 333 ~~~~~~~~L~~~~~~~~~l~~~ 354 (364)
+.+.++++++++++++..++..
T Consensus 213 ~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 213 PLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999888777654
No 13
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.70 E-value=5.3e-15 Score=132.29 Aligned_cols=224 Identities=15% Similarity=0.170 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCC----c-cc--hhchHHHHHHHHHHHHHHHHHhhh
Q 042194 103 WGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQK----I-DN--QQNLFNIVGSLYMVVVFLGINNCS 175 (364)
Q Consensus 103 ~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~----~-~~--~~~~~~~~g~~~~~~~~~~~~~~~ 175 (364)
+++++++.+|++++..|||..+...+++|+++.++++.+|...-+. + ++ ....+-..|++.+.....++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3678999999999999999999999999999999999998543110 0 00 1112223344444333322221
Q ss_pred hccchhhhhhh--hhhHH--------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 042194 176 SVIPNVARERT--VMYRE--------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNY 239 (364)
Q Consensus 176 ~~~~~~~~er~--~~~re--------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 239 (364)
+ .....||. .+.|- +++.....+++.++...+.+ ..|.+.+...+.......++...+..+
T Consensus 79 -~-~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 -S-LSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred -h-hHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1 12223333 32221 44444444554444333333 235444333344444555667778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC---CcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCC
Q 042194 240 LGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKI---PNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGET 316 (364)
Q Consensus 240 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~l---p~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~ 316 (364)
+|.+++...++.+....+.+++..|++++||.+.|.+.+ |+|++|+.++||++|..|++-....
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~------------- 222 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALY------------- 222 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHh-------------
Confidence 999999999999889888999999999999999999776 8899999999999999999843211
Q ss_pred ccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 042194 317 KSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGK 358 (364)
Q Consensus 317 ~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~ 358 (364)
| +.-|..+.++.++.+++..++....|+
T Consensus 223 -----------g---~~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 223 -----------G---QLNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred -----------C---CcchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 012456677777777776666665543
No 14
>PRK15066 inner membrane transport permease; Provisional
Probab=99.65 E-value=4.5e-14 Score=126.54 Aligned_cols=235 Identities=18% Similarity=0.210 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHhhcc-CCCccchhchHHHHHHHHHHHHHHHHHhhhhccc
Q 042194 102 GWGQFKSCLWKLHLSYWRSPSY-NLTRIMHMTTSSLLFGVLFWEQ-GQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIP 179 (364)
Q Consensus 102 ~~~q~~~l~~R~~~~~~R~~~~-~~~~l~~~~~~~ll~g~~f~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (364)
.++.++++.+|+++...||+.. +..-++++.++.+++|..+... ++..+.....+-..|++.+.....+......++.
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~ 85 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFF 85 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999864 4445566666777777665321 1100011112223355544443333332222211
Q ss_pred hhhhhhhhhhH--------H------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042194 180 NVARERTVMYR--------E------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLV 245 (364)
Q Consensus 180 ~~~~er~~~~r--------e------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~ 245 (364)
.- ++.+...| + ++......+++.++...+.+...|.+.. .........++...+....|.+++
T Consensus 86 ~~-~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a 162 (257)
T PRK15066 86 SA-KFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINA 162 (257)
T ss_pred HH-HHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12122222 2 2223333344444444444444454432 233333444444444555689998
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHH
Q 042194 246 SLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLED 325 (364)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~ 325 (364)
...++.+....+.+.+..|++++||.++|.+++|+|+|++.++||++|..|++-...+
T Consensus 163 ~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~---------------------- 220 (257)
T PRK15066 163 VFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL---------------------- 220 (257)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc----------------------
Confidence 8899998899999999999999999999999999999999999999999999943322
Q ss_pred hhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 042194 326 YFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLR 363 (364)
Q Consensus 326 ~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~ 363 (364)
|.+..+.|.++++++++++++..++....|+.++.|
T Consensus 221 --g~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 221 --GISDVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 222223577889999999999888888888766554
No 15
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.63 E-value=5.2e-14 Score=124.19 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=131.9
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHH-HHHHHHHHHHHHHHHhhhhccchhhhhhh--hhhHH---
Q 042194 118 WRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFN-IVGSLYMVVVFLGINNCSSVIPNVARERT--VMYRE--- 191 (364)
Q Consensus 118 ~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~er~--~~~re--- 191 (364)
+|||..+...+.+|+++.++++.++.+... .+.... ..+.+-+.+...+. ......+.+||+ .+.|-
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~er~~G~l~rl~~~ 74 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT----HNRGATFIPVLMALAAISTAF---TGQAIAVARDRRYGALKRLGAT 74 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC----CcchhHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhCHHHHHhcC
Confidence 699999999999999999999988854211 111221 33333322222222 222233446655 45444
Q ss_pred -----------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHH
Q 042194 192 -----------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTP---NFMIASIL 257 (364)
Q Consensus 192 -----------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~---~~~~a~~~ 257 (364)
.+...+..+++..+.. +.++..|.+.... ....++...+....+.+++.+++.+.+ +.+.+..+
T Consensus 75 P~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 152 (232)
T TIGR00025 75 PLPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAV 152 (232)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4444445444444443 4445667665332 223333344444555566666666664 45556888
Q ss_pred HHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccch
Q 042194 258 STVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPIT 337 (364)
Q Consensus 258 ~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 337 (364)
.+++..|++++||.++|.+.+|+|+||+++++|++|+.+++-....++ .+....+.+
T Consensus 153 ~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~-----------------------~~~~~~~~~ 209 (232)
T TIGR00025 153 ANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVS-----------------------VDTFGAVRD 209 (232)
T ss_pred HHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCC-----------------------CChhhHHHH
Confidence 899999999999999999999999999999999999999984432221 122235678
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 042194 338 AVVLIFYPLVLAFLFAYCIG 357 (364)
Q Consensus 338 ~~~L~~~~~~~~~l~~~~l~ 357 (364)
+++++++.+++..++....|
T Consensus 210 ~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888887777666554
No 16
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.54 E-value=1.1e-13 Score=120.10 Aligned_cols=141 Identities=17% Similarity=0.089 Sum_probs=112.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcc
Q 042194 192 VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGF 271 (364)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~ 271 (364)
.+...+..++++++...+.+++.|++.. ++...++..++...++.++|.++++.+++... ........+++++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~~~~~~~sG~ 142 (208)
T TIGR03062 67 LLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLLVLQLGSSGG 142 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHHHHHHccCCC
Confidence 6677788888988888889888888753 46677788888899999999999999997654 3444455677778999
Q ss_pred ccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHH
Q 042194 272 LITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFL 351 (364)
Q Consensus 272 ~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l 351 (364)
++|.+.+|+|+||+++++|++|+.+++....+++. ..+.|.++++|+++.+++.++
T Consensus 143 ~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~L~~~~~v~~~l 198 (208)
T TIGR03062 143 TFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------DGTLWQAVAVLLLILVVFLAL 198 (208)
T ss_pred ccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999965544321 123678899999999988888
Q ss_pred HHHHHHhcc
Q 042194 352 FAYCIGKLN 360 (364)
Q Consensus 352 ~~~~l~~~~ 360 (364)
+....|+++
T Consensus 199 a~~~~~~~~ 207 (208)
T TIGR03062 199 SLLSARRKR 207 (208)
T ss_pred HHHHHhhhc
Confidence 888776544
No 17
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.19 E-value=2.3e-09 Score=97.00 Aligned_cols=132 Identities=16% Similarity=0.309 Sum_probs=100.0
Q ss_pred HhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhh
Q 042194 207 VIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLV-SLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWL 285 (364)
Q Consensus 207 ~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~-~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl 285 (364)
..+..+..|.. ....+........+......++|.+++ ...++.+.+..+.+.+..++.++||.++|.+.+|+|+||+
T Consensus 153 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i 231 (286)
T COG0842 153 LLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGI 231 (286)
T ss_pred HHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHH
Confidence 33333444422 233456666667777778888888665 2566677888888899999999999999999999999999
Q ss_pred hccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 286 YYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 286 ~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
++++|.+|+.+++-.....+. ...+.+.++++++++.+++.+++...+|+.++.
T Consensus 232 ~~~~P~t~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 232 SYINPLTYAIDALRYVYLGGW-----------------------RNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHccHHHHHHHHHHHHhCCC-----------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999955433222 222267899999999999999999998877654
No 18
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.12 E-value=6.6e-10 Score=91.10 Aligned_cols=106 Identities=11% Similarity=0.043 Sum_probs=78.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 042194 192 VTVEIPYLLIQALAYVIISYPMIGYYGSAY--KVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFS 269 (364)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~--~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~s 269 (364)
+++.....+++.++..++.+. .|.+.+.. .....++...+.......+|..++...++.+..+ ..+.+.+|+.++|
T Consensus 39 ~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~~~~~~~~~~-~~~~v~~pl~fls 116 (152)
T TIGR01248 39 IIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMALRKEGRFAME-ALELAQAAAAFLN 116 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHh
Confidence 556667777777777777753 47765421 2223333445556677777777766677766444 4578889999999
Q ss_pred ccccCCCCCCcchhhhhccChHHHHHHHHH
Q 042194 270 GFLITGPKIPNWWIWLYYMTPTSWALNGMI 299 (364)
Q Consensus 270 G~~~~~~~lp~~~~wl~~~sp~~y~~~~l~ 299 (364)
|.+.|.+++|+|+||+.+++|.+|+.|++-
T Consensus 117 g~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 117 PGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred hhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 999999999999999999999999999984
No 19
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=4.5e-08 Score=87.13 Aligned_cols=232 Identities=13% Similarity=0.090 Sum_probs=143.1
Q ss_pred chHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccc
Q 042194 101 NGWGQFKSCLWKLHLSYWRSP-SYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIP 179 (364)
Q Consensus 101 ~~~~q~~~l~~R~~~~~~R~~-~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (364)
..++..+.|.+|+.+...|+- --.+..++.|+++.++++.+|...-+.+...-..+-..|++.+.....+.+ ....
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~~i~---~~~~ 91 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSEAIS---EGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH---hHHH
Confidence 346778889999999776544 446677888888888888887654442211122233334443332222222 2222
Q ss_pred hhhhhhhhhh-----HH------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042194 180 NVARERTVMY-----RE------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLT 248 (364)
Q Consensus 180 ~~~~er~~~~-----re------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~ 248 (364)
.+.....++. ++ ++.++....+..++....+-+... .+ ...+........+..+.+.++|.+++++.
T Consensus 92 s~~~n~~li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~-~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~ 169 (263)
T COG1682 92 SVVANAALIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLIILGV-EP-SWHWLLLLPALLLLILFSVGLGLILASLG 169 (263)
T ss_pred HhhhhHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC-cHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3323333332 23 333333333333332222222222 22 33455565666677777888899999988
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhC
Q 042194 249 PNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFG 328 (364)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g 328 (364)
...+.-..+...++.+++..||.+.|.+.+|..++++..+||+.|.+|.+-...+.+...
T Consensus 170 v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~~-------------------- 229 (263)
T COG1682 170 VRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDVP-------------------- 229 (263)
T ss_pred hhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCcc--------------------
Confidence 887777777888888889999999999999999999999999999999996655443321
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 329 FHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 329 ~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
-+.+....++..++..++++...++.+++
T Consensus 230 -----~~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 230 -----DLHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 13345555556666666777777665543
No 20
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.90 E-value=4.3e-07 Score=81.27 Aligned_cols=232 Identities=11% Similarity=0.046 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHHHHHHHhhccCCCc-cc-hhchHHHHHHHHHHHHHHHHHhhhhccc
Q 042194 103 WGQFKSCLWKLHLSYWRSP-SYNLTRIMHMTTSSLLFGVLFWEQGQKI-DN-QQNLFNIVGSLYMVVVFLGINNCSSVIP 179 (364)
Q Consensus 103 ~~q~~~l~~R~~~~~~R~~-~~~~~~l~~~~~~~ll~g~~f~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (364)
....+.|.+|+++...|+- --.+..+++|+++.+++..+|..+.... .+ ....+-..|++.+.....+.+...++ .
T Consensus 18 ~~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~~~~~~fl~~Gl~pw~~fs~~~~~~~~a-~ 96 (264)
T PRK15176 18 CELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPISTDDISFVIAGILPYLLFRYTITATMRT-H 96 (264)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4567888999998776554 4577778889988888888875433210 01 11123333444333322222211110 0
Q ss_pred hhhhhhh-h-----hhHH----hhhhhhHHHHHHHHHHhhhhc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042194 180 NVARERT-V-----MYRE----VTVEIPYLLIQALAYVIISYP-MIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLT 248 (364)
Q Consensus 180 ~~~~er~-~-----~~re----~~~~~~~~~~~~~~~~~i~y~-~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~ 248 (364)
.+ .+.. . +-|| ...+....++.-++...+.+. ..+..+ ..........++..+.+.++|+++|++.
T Consensus 97 si-~~~~~li~kv~~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~~ll~~l~~~glglils~l~ 173 (264)
T PRK15176 97 SF-STSLAVVSQVKKRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEA--QKPFLIFEGMVIAWLLGLSFGYFCDALS 173 (264)
T ss_pred HH-HHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1 2233 111222111111111111111 112222 2223233333445556677788887776
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhC
Q 042194 249 PNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFG 328 (364)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g 328 (364)
.-......+...++.+++..||.+.|.+.+|++++++-++||+.+.+|++-...+++..
T Consensus 174 v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~--------------------- 232 (264)
T PRK15176 174 ERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH--------------------- 232 (264)
T ss_pred HhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC---------------------
Confidence 65555666677788888899999999999999999999999999999999555443221
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 042194 329 FHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLR 363 (364)
Q Consensus 329 ~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~ 363 (364)
..+.+....++++++..+++....|+.|.++
T Consensus 233 ----~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 263 (264)
T PRK15176 233 ----SLYLEPFYPLAFSATLFLAGLIFHLICDTEN 263 (264)
T ss_pred ----ccccChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1133557777888888888888877766543
No 21
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.74 E-value=5.4e-06 Score=73.34 Aligned_cols=212 Identities=16% Similarity=0.111 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhh--ccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccchhhhh
Q 042194 107 KSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFW--EQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARE 184 (364)
Q Consensus 107 ~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~e 184 (364)
+++.|||++...|.|.....-.+..++.++....... +..+. +..+..+..+...+.. ....... ....+.+|
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~--~~~~p~l-~~~~ia~E 76 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFLWVFPGDFNILDY--GYADLTPFFSLAPWVF--LFLIPAI-TMRSFAEE 76 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHhc--CcchHHHHHHHHHHHH--HHHHHHH-HHHHHHHH
Confidence 5789999999999999988877777777744322211 11111 1122222222211111 1111111 22455577
Q ss_pred hhhhhHH------------hhhhhh----HHHHHH---HHHHhhhhcccccc---cchhHHHHHHHHHHHHHHHHHHHHH
Q 042194 185 RTVMYRE------------VTVEIP----YLLIQA---LAYVIISYPMIGYY---GSAYKVFWNFYVMFCTMMFYNYLGM 242 (364)
Q Consensus 185 r~~~~re------------~~~~~~----~~~~~~---~~~~~i~y~~~g~~---~~~~~~~~~~~~~~l~~~~~~~lg~ 242 (364)
|+.=.-| ++.+.. ...+.. +.+..... ..|.+ .+.+.+...++..++...+..++|.
T Consensus 77 r~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig~ 155 (240)
T TIGR03518 77 RKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIY-QLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIGL 155 (240)
T ss_pred HHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7532222 222221 111111 11111111 11211 2344455555566677778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC--CcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHH
Q 042194 243 LLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKI--PNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLS 320 (364)
Q Consensus 243 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~l--p~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~ 320 (364)
++|+..+|...|..++......+.+ |... ..++ |++.+|+.++||.+|..+.. ...+
T Consensus 156 ~iSsl~~~q~~a~~~~~~~~~~l~~--~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~g~i----------------- 214 (240)
T TIGR03518 156 FASSLTENQIVAFIIAVFLCFLFYF--GFDG-LASLLWGGSAYTISELGLSYHYESIS-RGVI----------------- 214 (240)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHH--HHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-cCcc-----------------
Confidence 9999999988887666554333322 2111 2334 88899999999988876654 1110
Q ss_pred HHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 042194 321 SFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGK 358 (364)
Q Consensus 321 ~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~ 358 (364)
.+.++...+.+++++..++...+++
T Consensus 215 -------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 -------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1356777777777777777666553
No 22
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.24 E-value=0.00016 Score=65.28 Aligned_cols=101 Identities=22% Similarity=0.203 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc-CCCCCC--cch--hhhhccChHHHHHHHHHHhhhcCCCcee
Q 042194 236 FYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLI-TGPKIP--NWW--IWLYYMTPTSWALNGMITSQYGDIDKEI 310 (364)
Q Consensus 236 ~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~lp--~~~--~wl~~~sp~~y~~~~l~~~~f~~~~~~~ 310 (364)
+..+++.++|++++|...|...+..+.....+...... ..++.. .+. ..+.+++|..+ ++.+......+..
T Consensus 170 ~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~--- 245 (277)
T PF12679_consen 170 VFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF--- 245 (277)
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc---
Confidence 56899999999999988887777766555433322221 111111 111 33466666543 2322222111110
Q ss_pred eecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhc
Q 042194 311 IVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKL 359 (364)
Q Consensus 311 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~ 359 (364)
.....|.++++++++.+++..+++..++++
T Consensus 246 -------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 246 -------------------VWLSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred -------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 002357889999999999999988666554
No 23
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.09 E-value=6.5e-07 Score=82.94 Aligned_cols=132 Identities=20% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 042194 192 VTVEIPYLLIQALAYVIISYPMIG---YYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLF 268 (364)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~y~~~g---~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~ 268 (364)
.+..+...++..++...+ ..| ++. .++...++..++..++..+++.+++.++++...+..+..++..++..+
T Consensus 209 ~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~ 283 (344)
T PF12698_consen 209 FLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSFL 283 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443 333 332 245666678888889999999999999999999988888888877788
Q ss_pred hccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHH
Q 042194 269 SGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVL 348 (364)
Q Consensus 269 sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~ 348 (364)
+|.+.|.+++|++++++.++.|..|..+++....+ |- ..+.+.++++++++++++
T Consensus 284 ~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~------------------------~~-~~~~~~~~~~l~~~~~v~ 338 (344)
T PF12698_consen 284 SGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIY------------------------GD-WSEIWISLIILLLFAVVY 338 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHH------------------------hc-HHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999988744321 11 223667888888888887
Q ss_pred HHHHH
Q 042194 349 AFLFA 353 (364)
Q Consensus 349 ~~l~~ 353 (364)
.++++
T Consensus 339 ~~l~~ 343 (344)
T PF12698_consen 339 LLLAI 343 (344)
T ss_dssp -----
T ss_pred HHHHh
Confidence 77664
No 24
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=97.98 E-value=1.4e-05 Score=60.57 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=48.6
Q ss_pred CceeeecC----CC-ccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 042194 307 DKEIIVFG----ET-KSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLR 363 (364)
Q Consensus 307 ~~~~~~~~----~~-~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~ 363 (364)
...|...| .. ++|.+|+...|+++.++.|.|++|+++|.++|.++.++++.+.+..+
T Consensus 16 ~q~C~~~Ga~~G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 16 NQVCAVVGAQPGSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred cCccCCCCCCCCccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45565443 32 89999999999999999999999999999999999999999887653
No 25
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.94 E-value=0.0015 Score=56.25 Aligned_cols=232 Identities=14% Similarity=0.192 Sum_probs=126.0
Q ss_pred chHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchh--chHHHHHHHHHHHHHHHHHhhhhcc
Q 042194 101 NGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQ--NLFNIVGSLYMVVVFLGINNCSSVI 178 (364)
Q Consensus 101 ~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~ 178 (364)
.+++.++.+++-.+++..--+...+...+...+-+++.+.++-.+.++.+..+ +..|.....++.-...-.+.. .+.
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~-~~~ 81 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTV-WSI 81 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 57888889998888888766777777777777777777766654443211111 223333333322211111211 222
Q ss_pred chhhhhhhhhh---------------HHhhhh--------hhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 042194 179 PNVARERTVMY---------------REVTVE--------IPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMM 235 (364)
Q Consensus 179 ~~~~~er~~~~---------------re~~~~--------~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~ 235 (364)
-.+ |+++-. +|..++ +|+.++..++|....-...-. .+......+.+.+.+...
T Consensus 82 ~ef--~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~-l~~~~l~~~~l~la~~~~ 158 (268)
T COG4587 82 WEF--EKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQF-LSPWTLYLFVLALALLFL 158 (268)
T ss_pred HHH--HHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhc-CCHHHHHHHHHHHHHHHH
Confidence 233 333222 223333 343333333332222111111 222222222222222222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCC
Q 042194 236 FYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGE 315 (364)
Q Consensus 236 ~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~ 315 (364)
.--.+-..++..+--.+-|+.+.........+.||.+.|++..|+|.+-+--+.|+-|....=+....+.
T Consensus 159 ~~F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~~il~ftPFpy~~y~P~~llvGk---------- 228 (268)
T COG4587 159 LRFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPDWVRAILAFTPFPYLLYTPVMLLVGK---------- 228 (268)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChHHHHHHHHhCCchhhhccHHHHHhcc----------
Confidence 2222333334333334457778888888888999999999999999999888889888765422221110
Q ss_pred CccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhc
Q 042194 316 TKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKL 359 (364)
Q Consensus 316 ~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~ 359 (364)
.+.++.+.+.++.+++..++..++-...|+-
T Consensus 229 -------------~s~~~il~al~v~~~Wl~im~~l~~~lWrrg 259 (268)
T COG4587 229 -------------YSGAQILKALLVQIGWLLIMWLLSRWLWRRG 259 (268)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223367889999999888887777666554
No 26
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.57 E-value=0.031 Score=50.44 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC-----CCCCCcchhhhhccChHHHHHH
Q 042194 222 KVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLIT-----GPKIPNWWIWLYYMTPTSWALN 296 (364)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~-----~~~lp~~~~wl~~~sp~~y~~~ 296 (364)
....+.....+......+++.++++..++...+..++..+.....+..+.... ..+..+..+.+...+|..+..+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (278)
T COG1277 146 RLLLFLGSSLLYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAE 225 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHH
Confidence 45667777888888999999999999999988877777666655544333221 1111125667888999888888
Q ss_pred HHHHhhhcC-CCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcc
Q 042194 297 GMITSQYGD-IDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLN 360 (364)
Q Consensus 297 ~l~~~~f~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~ 360 (364)
......... .+. .. ..........|.++.+++++.+++..+++...++++
T Consensus 226 ~~~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 226 LAFTILLQSGFSD------SI--------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred Hhhhhcccccccc------cc--------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 765543311 000 00 001111223678899999999999888888777654
No 27
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=97.45 E-value=0.00053 Score=46.65 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=42.5
Q ss_pred CccHHHHHHHhhCCCCCC--ccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 316 TKSLSSFLEDYFGFHHDR--LPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 316 ~~~~~~~l~~~~g~~~~~--~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
+.+-|+.+++..|+.+++ +|.++++|+++.++|.++..++|.|.++.+|
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~k 59 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLGK 59 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 356677778889999886 7799999999999999999999999998754
No 28
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.39 E-value=0.0052 Score=58.35 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=81.8
Q ss_pred hhhhhhHHHHHHHHHHhhhhccccccc--ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 042194 192 VTVEIPYLLIQALAYVIISYPMIGYYG--SA--YKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNL 267 (364)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~y~~~g~~~--~~--~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l 267 (364)
.++.....++.+++++.+. +..+.+. .. +.|..+++..++...+.....-.+.++++.+ -+.+..+..+.+-+
T Consensus 249 ~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~--~~~~~ll~wvi~nv 325 (382)
T PF12051_consen 249 WIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPP--FMPFWLLFWVILNV 325 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHhc
Confidence 4444555566667776666 3444332 22 3477777666666554444333333444322 34444455555556
Q ss_pred hhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHH
Q 042194 268 FSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLV 347 (364)
Q Consensus 268 ~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~ 347 (364)
.+ .+.|++-.|++.||.+-+ |++.+++++-...|+. ...+...++++|++|.++
T Consensus 326 ~~-~~~P~el~p~fyr~gya~-P~~n~~~~~r~I~fd~------------------------~~~~lg~n~gil~aw~~v 379 (382)
T PF12051_consen 326 SS-TFYPLELSPGFYRYGYAM-PMHNIYEGLRVIFFDT------------------------CKGQLGRNYGILFAWIVV 379 (382)
T ss_pred cc-ccCChhhCccHHHHhhhh-hHHHHHHHHHHheeCC------------------------CcccccchHHHHHHHHHH
Confidence 66 567999999999999999 9999999997764432 223477899999999775
Q ss_pred H
Q 042194 348 L 348 (364)
Q Consensus 348 ~ 348 (364)
-
T Consensus 380 ~ 380 (382)
T PF12051_consen 380 N 380 (382)
T ss_pred H
Confidence 3
No 29
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=97.15 E-value=0.025 Score=49.09 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccchhhhhh
Q 042194 106 FKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARER 185 (364)
Q Consensus 106 ~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er 185 (364)
++.++||+++.-+|++.....-+...+....++...+ +.+. ........|++..+..+.+. .+....+.+|+
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al---~~~~--~~l~~~~~gllWi~~lfa~~---l~~~r~f~~E~ 72 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFAL---GPDP--DLLARVAPGLLWIALLFASL---LGLNRSFAREY 72 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhc---CCch--hHHHHHhHHHHHHHHHHHHH---HHhhHhHHHHH
Confidence 4789999999999999988877777777666666654 3321 11122233444444433332 33334455554
Q ss_pred h--hh--h------HH------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 042194 186 T--VM--Y------RE------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTP 249 (364)
Q Consensus 186 ~--~~--~------re------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~ 249 (364)
+ .+ + ++ .++......+..++...+...+.+.+ ......+.+++.+.+.+...+|.+.+++.-
T Consensus 73 e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~igtl~aal~~ 150 (215)
T PF03379_consen 73 EDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIGTLLAALAA 150 (215)
T ss_pred hCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3 21 1 12 33333333333333333333344544 344566667777888888888888888877
Q ss_pred CHHHHHHHHHHHHHHH
Q 042194 250 NFMIASILSTVFYTLF 265 (364)
Q Consensus 250 ~~~~a~~~~~~~~~~~ 265 (364)
+.+....+.++...|+
T Consensus 151 ~~r~~~~Ll~lL~lPl 166 (215)
T PF03379_consen 151 GARGREILLPLLLLPL 166 (215)
T ss_pred hccccCHHHHHHHHHH
Confidence 6665556666666665
No 30
>COG1511 Predicted membrane protein [Function unknown]
Probab=96.92 E-value=0.0083 Score=62.16 Aligned_cols=129 Identities=21% Similarity=0.141 Sum_probs=89.6
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc
Q 042194 194 VEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLI 273 (364)
Q Consensus 194 ~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~ 273 (364)
+.+....++..+-..-.+.+.|.... .-+.+.+..+..+++++.+-..+.+++.+. +..+..++++.++..+|-..
T Consensus 627 ~~i~~~~~q~~i~~~~~~~~l~~~~~--~~~~~~~~~i~~s~~f~~ii~~lv~~~g~~--g~~i~ivllvlq~~~~~G~~ 702 (780)
T COG1511 627 VFITLGLIQSLIVTLGLVLLLGVEVK--SPLLLVLFAIFSSVAFMIIIYLLVSLFGNP--GKFIAIVLLVLQIAGSGGTF 702 (780)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEeccC--chhHHHHHHHHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHhcccccc
Confidence 33344444444444444455555432 234455666677777888888888888854 66777778888889999999
Q ss_pred CCCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHH
Q 042194 274 TGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAF 350 (364)
Q Consensus 274 ~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~ 350 (364)
|+...|.++++++..-|++|++.++-... -+.-....|.+.+++.++.++|.+
T Consensus 703 pi~~~~~~~~~l~~~lp~ty~v~~~r~~~------------------------~~~~~~~~~~~~~~~~~~~i~~~~ 755 (780)
T COG1511 703 PIQLSPSFFQILHPALPLTYAVNGFREVI------------------------GGPIPSNLWSGLLALIGFLILFII 755 (780)
T ss_pred chhccHHHHHHHHHhccHHHHHHHhHHhh------------------------ccCchHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999977662211 122233467788888888777776
No 31
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=95.87 E-value=0.36 Score=41.59 Aligned_cols=146 Identities=11% Similarity=0.001 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHH-HHHHHHHHHHHHHHhhhhccchhhhhhh-
Q 042194 109 CLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNI-VGSLYMVVVFLGINNCSSVIPNVARERT- 186 (364)
Q Consensus 109 l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~er~- 186 (364)
+.+|+++..+|++.....-++..++...++..-+ +.+ .+..... .|++..+..+.. ..+.-..|..|++
T Consensus 1 ~~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la~---gp~---~~~l~~~apgilWva~lfa~---ll~l~rlF~~d~e~ 71 (211)
T TIGR01190 1 LIRRDLRLAFRAGGGILNPLWFFLIVVTLFPFGV---GPE---LKLLSRIAPGIVWVGALLSS---LLSLDRLFRDDFED 71 (211)
T ss_pred CcHHHHHHHHcccchHHHHHHHHHHHHHHHHhhc---CCc---HHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHhC
Confidence 3689999999999887776666666666655554 332 1222222 344443333333 3333455555554
Q ss_pred -hhh--------HH------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 042194 187 -VMY--------RE------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNF 251 (364)
Q Consensus 187 -~~~--------re------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~ 251 (364)
.+. ++ .+++.....+.-++..-..-.+.|++. .......+++.+.+.....+|.+.++++-+.
T Consensus 72 g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt~g~ 149 (211)
T TIGR01190 72 GSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALTVGL 149 (211)
T ss_pred CcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 11 333322222222222222233445433 3346677778888888888888888887765
Q ss_pred HHHHHHHHHHHHHH
Q 042194 252 MIASILSTVFYTLF 265 (364)
Q Consensus 252 ~~a~~~~~~~~~~~ 265 (364)
.....+.+++..|+
T Consensus 150 r~~~~Ll~lL~lPl 163 (211)
T TIGR01190 150 KRGGLLLSLLVLPL 163 (211)
T ss_pred cCCchHHHHHHHHH
Confidence 44444444554444
No 32
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=95.62 E-value=1.2 Score=39.02 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=57.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhcc-ChHH
Q 042194 214 IGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYM-TPTS 292 (364)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~-sp~~ 292 (364)
.+.+.+..++..+.+.+++......++..+++..+=-.+....+. .....+++|...|.+-.|+|+|++-.. .|+.
T Consensus 104 ~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~~~~~il~~~lPf~ 180 (229)
T PF06182_consen 104 LGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPGWIQFILTFILPFA 180 (229)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHHHHHHHHHHHhhHH
Confidence 455566777887777777777777777777776655444443333 233445999999999999999986554 9988
Q ss_pred HHHHHH
Q 042194 293 WALNGM 298 (364)
Q Consensus 293 y~~~~l 298 (364)
+....=
T Consensus 181 ~i~~~P 186 (229)
T PF06182_consen 181 YISYVP 186 (229)
T ss_pred HHHHHH
Confidence 776653
No 33
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=93.82 E-value=4.6 Score=46.74 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcc-ccCCCCCCcchhh-hhccChHHHHHHHH
Q 042194 221 YKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGF-LITGPKIPNWWIW-LYYMTPTSWALNGM 298 (364)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~-~~~~~~lp~~~~w-l~~~sp~~y~~~~l 298 (364)
..++..++.+++..++...++.++++++.+...|+.++.++.+.+.+--.+ +.-.+.++...+| ++=+||..+++..-
T Consensus 728 s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~ 807 (2272)
T TIGR01257 728 SDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTE 807 (2272)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHHHH
Confidence 345667777788888889999999999999999999888887665432221 1123455555555 46677767666544
Q ss_pred HHh
Q 042194 299 ITS 301 (364)
Q Consensus 299 ~~~ 301 (364)
...
T Consensus 808 ~i~ 810 (2272)
T TIGR01257 808 YLV 810 (2272)
T ss_pred HHH
Confidence 333
No 34
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=4.2 Score=34.58 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHHHHHHHHHHHHHHHHhhhhccchhhh
Q 042194 104 GQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVAR 183 (364)
Q Consensus 104 ~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (364)
..++.+++|++|.-+|.+.....-+........++..-+ |.+ .+.-..-.-|++....... ++.+.-..|.+
T Consensus 2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~~v---Gpd--~~~la~iaPgilWia~lLA---~lL~l~rlF~~ 73 (221)
T COG2386 2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPLAV---GPD--PQLLARIAPGILWIAALLA---SLLGLERLFRD 73 (221)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc---CCc--hhHHHHhcchHHHHHHHHH---HHHhHHHHHHH
Confidence 457889999999999988877665555555555444433 443 2222222224443333232 23333345555
Q ss_pred hhh--hhhH--------H------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042194 184 ERT--VMYR--------E------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSL 247 (364)
Q Consensus 184 er~--~~~r--------e------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~ 247 (364)
|++ .... | ++++-..+.+.-++.+-+.+.+.+.+ ...+....+++.+.+...+.+|...+++
T Consensus 74 d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga~gaAL 151 (221)
T COG2386 74 DYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGAVGAAL 151 (221)
T ss_pred hhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 553 1111 1 44444444444445555555566654 4557777777777777777778877777
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 042194 248 TPNFMIASILSTVFYTLF 265 (364)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~ 265 (364)
.-+....-.+.+++..|.
T Consensus 152 tv~lrrgglLl~vlvlPl 169 (221)
T COG2386 152 TVGLRRGGLLLSVLVLPL 169 (221)
T ss_pred HhcCccCCchhhHHHHHH
Confidence 766655555555555554
No 35
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=90.66 E-value=11 Score=33.22 Aligned_cols=33 Identities=3% Similarity=-0.054 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 042194 219 SAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNF 251 (364)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~ 251 (364)
+...+....+.+++.++....+...++....+.
T Consensus 127 ~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~~ 159 (248)
T TIGR03733 127 PLSLFLIAALLLIIGSLFLYIIHLFVSFAFGMG 159 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344566666777888888888999998888753
No 36
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=89.55 E-value=20 Score=34.22 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHH
Q 042194 224 FWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSW 293 (364)
Q Consensus 224 ~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y 293 (364)
...-++.....+...++...+..+.|...--.-+..........++|. -++| +|+-.+||+.|
T Consensus 435 v~sgl~~lvav~f~l~ia~ll~GLaPr~t~laWlyl~~~~fvtyLg~L----lslp---ewl~nlSp~~h 497 (536)
T COG3559 435 VGSGLVQLVAVWFLLAIAVLLFGLAPRFTPLAWLYLIVGFFVTYLGGL----LSLP---EWLLNLSPFAH 497 (536)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHh----cccH---HHHhcCCcccc
Confidence 333444445556666777777788887654444333344445566663 3677 46778888554
No 37
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=87.37 E-value=14 Score=42.94 Aligned_cols=103 Identities=12% Similarity=-0.087 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHHHHHHhhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---H
Q 042194 192 VTVEIPYLLIQALAYVIISYPMI--GYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLF---N 266 (364)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~y~~~--g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~---~ 266 (364)
.+.|++..++.++++.++.+.+. ++ .+...+...++++++..++...+.+++|.+++++..|......+.+.. .
T Consensus 1728 fl~D~~~y~i~~~~~i~i~~~f~~~~~-~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~ 1806 (2272)
T TIGR01257 1728 FLWDIMNYAVSAGLVVGIFIGFQKKAY-TSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINS 1806 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhh-cCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 45566666666555554444221 11 123456666777888899999999999999999988866544333221 1
Q ss_pred Hhhcc----ccC---CCCCCcchhhhhccChHHHHHH
Q 042194 267 LFSGF----LIT---GPKIPNWWIWLYYMTPTSWALN 296 (364)
Q Consensus 267 l~sG~----~~~---~~~lp~~~~wl~~~sp~~y~~~ 296 (364)
+...+ +-+ ...+...++|+..+.| .|++.
T Consensus 1807 ~i~~~il~~~~~~~~~~~~~~~l~~if~i~P-~f~lg 1842 (2272)
T TIGR01257 1807 SAITFVLELFENNRTLLRFNAMLRKLLIVFP-HFCLG 1842 (2272)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHHHHeeCc-hhhhH
Confidence 11111 111 1223457788888887 55554
No 38
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=85.33 E-value=21 Score=30.02 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042194 226 NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFY 262 (364)
Q Consensus 226 ~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~ 262 (364)
..+..++.......+ .+++...+|.-.+..+..+..
T Consensus 139 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~ 174 (232)
T PF12730_consen 139 YLLLFLLLSLFISLL-LFISSLFRNSIVAIIISILLF 174 (232)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence 334444444555555 788888988665544444433
No 39
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=81.55 E-value=44 Score=32.06 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----HHhhccccCCCCCCcchhhhhccChHHHHHH
Q 042194 223 VFWNFYVMFCT-MMFYNYLGMLLVSLTPNFMIASILSTVFYTLF-----NLFSGFLITGPKIPNWWIWLYYMTPTSWALN 296 (364)
Q Consensus 223 ~~~~~~~~~l~-~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~-----~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~ 296 (364)
+..+.+...+. .+...+++.++++.+++.+.++.....+..+. .+..+...|...+..++.++.+.+|..-..+
T Consensus 279 ~l~~~~~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~ls~IPf~~p~~~~~r 358 (407)
T COG1668 279 LLLFALSLFLLGLLLYAALAAFLGAMAGSIKEAQTLISPLTFLAIIAFLPLSFISAAPDNAVALILSAIPFLLPVAMLLR 358 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHHHHHhccCCcchhHHHHhhccchhHHHHHHH
Confidence 33333333333 34555689999999999988877666332222 2345555566666666666666666444444
Q ss_pred HH
Q 042194 297 GM 298 (364)
Q Consensus 297 ~l 298 (364)
..
T Consensus 359 ~~ 360 (407)
T COG1668 359 AL 360 (407)
T ss_pred HH
Confidence 33
No 40
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=80.21 E-value=55 Score=31.87 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=30.7
Q ss_pred ccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHH
Q 042194 97 RFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLF 138 (364)
Q Consensus 97 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~ 138 (364)
+++.+...-...+.++++|...|+++.+. -++.|+.+.+..
T Consensus 241 ~~~~k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~ 281 (449)
T PF09847_consen 241 KFKIKIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPF 281 (449)
T ss_pred eeccccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHH
Confidence 34455566678899999999999988866 567777666654
No 41
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=69.10 E-value=7.8 Score=31.85 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=25.8
Q ss_pred HHHHHhhcChhhH---HHHHHHHHHHHHHHHHHhhc
Q 042194 112 KLHLSYWRSPSYN---LTRIMHMTTSSLLFGVLFWE 144 (364)
Q Consensus 112 R~~~~~~R~~~~~---~~~l~~~~~~~ll~g~~f~~ 144 (364)
|++++.+|||..+ ++-++.|++++++++..+++
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6789999999744 44577888888888888764
No 42
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=60.88 E-value=26 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 042194 122 SYNLTRIMHMTTSSLLFGVLF 142 (364)
Q Consensus 122 ~~~~~~l~~~~~~~ll~g~~f 142 (364)
+..+.-++.|+.+++++|.+|
T Consensus 4 Sl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355677888999999999998
No 43
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.90 E-value=1.2e+02 Score=26.48 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHh
Q 042194 222 KVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITS 301 (364)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~ 301 (364)
.++......++.+....++=..++..++|...|..++... |..+. .+.+..|+|+ .|-.|.. .+..+
T Consensus 137 ~~~~~~~~gll~alpl~~lQ~wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~~~---PW~~pi~----~~~~~ 203 (239)
T COG4200 137 AAFTLLILGLLLALPLVALQFWLSMRFKNFAVALVIGIFL--PALFV----ASAESLPVWL---PWASPIL----PMFSG 203 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCccc---cchhhhh----hhhcc
Confidence 4444555555666666667788888999988887777666 33222 2245677754 4444533 12111
Q ss_pred hhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhccc
Q 042194 302 QYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNF 361 (364)
Q Consensus 302 ~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~ 361 (364)
..+ .-.++..+..-++++.+.+.+.+++++.
T Consensus 204 ------------------------~l~-----v~~~i~~~~v~~ll~~l~s~l~~~r~~v 234 (239)
T COG4200 204 ------------------------SLS-----VETGILFLGVLALLFLLSSFLFFKRKKV 234 (239)
T ss_pred ------------------------ccc-----cchhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 011 1134555556667777777777776654
No 44
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=59.34 E-value=24 Score=32.39 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHh
Q 042194 97 RFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLF 142 (364)
Q Consensus 97 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f 142 (364)
++..+|..|-+..+++.+++.+|||...++.++...+..+++|.++
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~~ 49 (309)
T PRK11026 4 QFTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVCY 49 (309)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999988877766666666666554
No 45
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=48.97 E-value=37 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=20.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 334 LPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 334 ~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
+...+++..++.++..++.+++.+.++|.||
T Consensus 33 Lgm~~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 33 LGMWFLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3344666666666666777777777777665
No 46
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=45.40 E-value=49 Score=30.44 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHh
Q 042194 97 RFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLF 142 (364)
Q Consensus 97 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f 142 (364)
+|..-|..|-+..+++.+++.+|||...++.++...+..+++|..+
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~~~ 49 (309)
T TIGR00439 4 HYASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLVMY 49 (309)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999988877666665555555543
No 47
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=44.47 E-value=2.1e+02 Score=24.87 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=32.1
Q ss_pred cccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHh
Q 042194 98 FSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLF 142 (364)
Q Consensus 98 ~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f 142 (364)
..++.+.|++..++-.-+..-+=+...+.-++.++++++++|+++
T Consensus 5 k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~ 49 (224)
T PF13829_consen 5 KKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLF 49 (224)
T ss_pred ccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888887776666544444556666777888888888887
No 48
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=41.74 E-value=24 Score=30.91 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.3
Q ss_pred hHHHhhhccCCC-------------CCCCCCCCChhhHHHHh
Q 042194 21 SQVIEYFEGISG-------------VPKIRKNYNPATWILEV 49 (364)
Q Consensus 21 ~~~~~yF~~~~g-------------~~~cp~~~NpaD~~l~~ 49 (364)
+++++.|.+. | -|.||++.||+-|+-.+
T Consensus 102 ~sIedvf~~~-GL~LfP~t~~dl~~dCSCPD~anPCKHi~Av 142 (266)
T COG4279 102 ESIEDVFVGN-GLSLFPFTLRDLSTDCSCPDYANPCKHIAAV 142 (266)
T ss_pred chHHHHHHhc-CcccCCCchhhcccccCCCCcccchHHHHHH
Confidence 6888888876 4 27899999999987543
No 49
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=41.64 E-value=1.9e+02 Score=30.34 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCC
Q 042194 255 SILSTVFYTLFNLFSGFLITGPKIP 279 (364)
Q Consensus 255 ~~~~~~~~~~~~l~sG~~~~~~~lp 279 (364)
+.....++...-+++|.+-+...+-
T Consensus 216 ~~~~~~~~af~GLlaG~fk~~gK~g 240 (764)
T TIGR02865 216 NLYQIGVFGFAGLLGGIFKELGKIG 240 (764)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcce
Confidence 3334444455557788776665544
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.77 E-value=34 Score=26.63 Aligned_cols=28 Identities=7% Similarity=-0.190 Sum_probs=13.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccc
Q 042194 334 LPITAVVLIFYPLVLAFLFAYCIGKLNF 361 (364)
Q Consensus 334 ~~~~~~~L~~~~~~~~~l~~~~l~~~~~ 361 (364)
.+..+|++.+++....+++|++.|++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666666655444445555444433
No 51
>COG4325 Predicted membrane protein [Function unknown]
Probab=40.62 E-value=1.9e+02 Score=27.37 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=35.9
Q ss_pred hhhhhhhhHHhhhhh-hHHHHHHHHHHhhhhcccccccc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 042194 182 ARERTVMYREVTVEI-PYLLIQALAYVIISYPMIGYYGS-AYKVFWNFYVMFCTMMFYNYLGMLL 244 (364)
Q Consensus 182 ~~er~~~~re~~~~~-~~~~~~~~~~~~i~y~~~g~~~~-~~~~~~~~~~~~l~~~~~~~lg~~i 244 (364)
|+--..|.|.+.... .-.++.+++|++++.--+|-..+ .++|.-...+.....++..++|.++
T Consensus 114 PRll~~fmrd~~nqvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisig~~i 178 (464)
T COG4325 114 PRLLRTFLRDVPNQVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGALI 178 (464)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHHHHHH
Confidence 444456666633332 33455667777766655554333 2566666666666666666667666
No 52
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.45 E-value=72 Score=19.14 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 336 ITAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 336 ~~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
.-.+++.++.+......+.+..|++++
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 345556666666555555556666554
No 53
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.38 E-value=1.4e+02 Score=19.17 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=20.0
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHH-HHHHHHHh
Q 042194 110 LWKLHLSYWRSPSYNLTRIMHMTTS-SLLFGVLF 142 (364)
Q Consensus 110 ~~R~~~~~~R~~~~~~~~l~~~~~~-~ll~g~~f 142 (364)
+++.+++..||+..+..-++..+++ ..++|-.+
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777788998777665554443 33444444
No 54
>PF15203 TMEM95: TMEM95 family
Probab=31.01 E-value=26 Score=26.98 Aligned_cols=34 Identities=12% Similarity=0.351 Sum_probs=28.4
Q ss_pred CCCCCCcchhhhhccChHHHHHHHHHHhhhcCCC
Q 042194 274 TGPKIPNWWIWLYYMTPTSWALNGMITSQYGDID 307 (364)
Q Consensus 274 ~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~ 307 (364)
..+.+|.||+|+...-...|.-|++..-.-+|.+
T Consensus 64 s~S~lP~Yw~WL~ktklP~YtREalcapacrgst 97 (152)
T PF15203_consen 64 SFSSLPLYWQWLQKTKLPQYTREALCAPACRGST 97 (152)
T ss_pred ccccCcHHHHHHHhcccchhhhhhcCCcccCCce
Confidence 4578999999999999999999999776655544
No 55
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.57 E-value=35 Score=30.94 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=26.3
Q ss_pred CceeccCCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHH
Q 042194 1 LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILE 48 (364)
Q Consensus 1 lllLl~~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~ 48 (364)
|++|.++|++-++||. +.----+..+ |+ +|+|=-++
T Consensus 198 m~il~ngGkisafGp~----SRfg~ihd~~-G~-------~pvd~~~~ 233 (320)
T COG4607 198 LVILVNGGKISAFGPS----SRFGWIHDDL-GF-------TPVDENIK 233 (320)
T ss_pred EEEEecCCeeeeecCC----Ccceeeeccc-CC-------Cccccccc
Confidence 5788999999999998 4544555776 77 67664444
No 56
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.04 E-value=1.3e+02 Score=17.85 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=14.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhh
Q 042194 120 SPSYNLTRIMHMTTSSLLFGVLFW 143 (364)
Q Consensus 120 ~~~~~~~~l~~~~~~~ll~g~~f~ 143 (364)
|+..++..++..+++++++..-|+
T Consensus 15 NRTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 15 NRTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred chhhHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666667777666554
No 57
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=24.55 E-value=2.1e+02 Score=26.59 Aligned_cols=87 Identities=11% Similarity=0.063 Sum_probs=55.9
Q ss_pred HHhhccccC---CCCCCcchhhhhccChHHHHHHHHHHhhhcCCCceeee--cCCCccHHHHHHHhhCCCCCCccchhhH
Q 042194 266 NLFSGFLIT---GPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIV--FGETKSLSSFLEDYFGFHHDRLPITAVV 340 (364)
Q Consensus 266 ~l~sG~~~~---~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~~~~~~~~--~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 340 (364)
.+.+|.-+. ++.--.++.-++|.-|..-.+-++..++.++++..--| .+.+. +.+ .++ +.....+
T Consensus 120 ~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~---~~l---~~f----vl~Pl~i 189 (328)
T PF01534_consen 120 FLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNP---SAL---RGF----VLAPLFI 189 (328)
T ss_pred HHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCH---HHH---hHH----HHHHHHH
Confidence 344555443 45556677788999998888888888888877643222 11110 011 011 4567777
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 042194 341 LIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 341 L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
.+.++..|.+.+++.|.+.|+.
T Consensus 190 ~l~iG~~fL~~G~~~l~rir~~ 211 (328)
T PF01534_consen 190 YLLIGTVFLLAGFVSLFRIRRS 211 (328)
T ss_pred HHHHHHHHHHHHHHHHhcchhh
Confidence 8888888999999888777653
No 58
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=24.19 E-value=9.1e+02 Score=25.94 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=57.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh--
Q 042194 192 VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFS-- 269 (364)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~s-- 269 (364)
.+.+.+..++..+....+.+.+ | ......+...++...+.......+..+.+.+++....+.....++.....+.+
T Consensus 346 ~~~d~~~~~l~~~~~~~~~~~f-~-~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~~~~~ 423 (885)
T KOG0059|consen 346 LVWDLLLYLLILLILLIFVLIF-G-FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGLLVFF 423 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhhee-e-cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHHHHHH
Confidence 3344444444444433333322 2 12234456666777777888889999999999998888776665544443222
Q ss_pred --ccccCCCCCCcchhhhhccChHHHHH
Q 042194 270 --GFLITGPKIPNWWIWLYYMTPTSWAL 295 (364)
Q Consensus 270 --G~~~~~~~lp~~~~wl~~~sp~~y~~ 295 (364)
..+....+.|..+.+...+.|....+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~ 451 (885)
T KOG0059|consen 424 AVFILQSFANGRTGDIFSMILVPGFTLF 451 (885)
T ss_pred HHhhhhhcccccHHHHHHHHHhhhHHHH
Confidence 22333344554555555555544444
No 59
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.52 E-value=52 Score=29.77 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=27.3
Q ss_pred ceeccCCeEEEEcCCCCCchHH---HhhhccCCCCCCCCCCCChhhHH
Q 042194 2 ILLKTGGRIIYCRPLEKHSSQV---IEYFEGISGVPKIRKNYNPATWI 46 (364)
Q Consensus 2 llLl~~G~~vY~G~~~~~~~~~---~~yF~~~~g~~~cp~~~NpaD~~ 46 (364)
++++.+|++++.|++ ++. .+.++.. |. .+|.....++.+
T Consensus 214 i~~l~~G~i~~~g~~----~~~~~~~~~~~~~-~~-~~p~~~~~~~~~ 255 (288)
T PRK13643 214 VYLLEKGHIISCGTP----SDVFQEVDFLKAH-EL-GVPKATHFADQL 255 (288)
T ss_pred EEEEECCEEEEECCH----HHHHcCHHHHHHc-CC-CCChHHHHHHHH
Confidence 467899999999998 554 3345565 77 777766655544
No 60
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=22.51 E-value=1.7e+02 Score=20.42 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=19.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhccc
Q 042194 243 LLVSLTPNFMIASILSTVFYTLFNLFSGFL 272 (364)
Q Consensus 243 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~ 272 (364)
++-.+.+|+-.-..-+.+++.|+++.||++
T Consensus 11 ~v~~vAkdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 11 IVEWVAKDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred HHHHHHcChHHHHHHHHHHHhHHHHHHHHH
Confidence 344566666555555666677777777764
No 61
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=22.40 E-value=51 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.1
Q ss_pred hHHHhhhccCCCCCCCCCCC
Q 042194 21 SQVIEYFEGISGVPKIRKNY 40 (364)
Q Consensus 21 ~~~~~yF~~~~g~~~cp~~~ 40 (364)
+++++++++.||||-|.=-.
T Consensus 33 ~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 33 EDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred HHHHHHHHHcCCCcceeeec
Confidence 78999999998888776433
No 62
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.35 E-value=41 Score=22.78 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=15.4
Q ss_pred eccCCeEEEEcCCCCCchHHHhhhc
Q 042194 4 LKTGGRIIYCRPLEKHSSQVIEYFE 28 (364)
Q Consensus 4 Ll~~G~~vY~G~~~~~~~~~~~yF~ 28 (364)
|-+-|.+||+|++ .+..++-+
T Consensus 11 LK~~G~ivyfg~r----~~~iemm~ 31 (68)
T COG4483 11 LKKFGIIVYFGKR----LYDIEMMQ 31 (68)
T ss_pred HHHCCeeeecCCH----HHHHHHHH
Confidence 3455899999998 67777653
No 63
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.17 E-value=87 Score=28.61 Aligned_cols=26 Identities=0% Similarity=0.101 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 336 ITAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 336 ~~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
..+.+.+.+ ++-.++-|+.|||+|++
T Consensus 260 aSiiaIliI-VLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 260 ASIIAILII-VLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 334444433 33445566677777644
No 64
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=21.12 E-value=1.9e+02 Score=17.07 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=14.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhh
Q 042194 120 SPSYNLTRIMHMTTSSLLFGVLFW 143 (364)
Q Consensus 120 ~~~~~~~~l~~~~~~~ll~g~~f~ 143 (364)
|+..++..++.-+++++++..-|+
T Consensus 13 NRTSLY~GLllifvl~vLFssyff 36 (37)
T PF02419_consen 13 NRTSLYWGLLLIFVLAVLFSSYFF 36 (37)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHhhhhhc
Confidence 344556666666667776666554
No 65
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.72 E-value=1.5e+02 Score=20.94 Aligned_cols=22 Identities=0% Similarity=-0.069 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 042194 342 IFYPLVLAFLFAYCIGKLNFLR 363 (364)
Q Consensus 342 ~~~~~~~~~l~~~~l~~~~~~~ 363 (364)
+...++|....++.++|+++.|
T Consensus 10 livf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566677788888887654
No 66
>CHL00038 psbL photosystem II protein L
Probab=20.67 E-value=2e+02 Score=17.04 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=13.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhh
Q 042194 120 SPSYNLTRIMHMTTSSLLFGVLFW 143 (364)
Q Consensus 120 ~~~~~~~~l~~~~~~~ll~g~~f~ 143 (364)
|+..++..++..++.++++..-|+
T Consensus 14 NRTSLy~GLLlifvl~vlfssyff 37 (38)
T CHL00038 14 NRTSLYWGLLLIFVLAVLFSNYFF 37 (38)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhc
Confidence 344455556666666666665554
No 67
>PTZ00046 rifin; Provisional
Probab=20.42 E-value=1.1e+02 Score=28.75 Aligned_cols=29 Identities=3% Similarity=0.120 Sum_probs=18.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 042194 334 LPITAVVLIFYPLVLAFLFAYCIGKLNFLR 363 (364)
Q Consensus 334 ~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~ 363 (364)
+...+.+++.+ ++-.++-|+.|||+|++|
T Consensus 317 IiaSiiAIvVI-VLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 317 IIASIVAIVVI-VLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhcch
Confidence 44455555544 334467788899988774
No 68
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.05 E-value=1.2e+02 Score=19.05 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcc
Q 042194 337 TAVVLIFYPLVLAFLFAYCIGKLN 360 (364)
Q Consensus 337 ~~~~L~~~~~~~~~l~~~~l~~~~ 360 (364)
....++.+.++|..+.+.+.+.++
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 344455555555555555554443
Done!