Query 042194
Match_columns 364
No_of_seqs 161 out of 1745
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 49.9 32 0.0011 20.6 4.3 15 350-364 29-43 (44)
2 2l2t_A Receptor tyrosine-prote 43.1 32 0.0011 20.6 3.5 15 350-364 28-42 (44)
3 2lx0_A Membrane fusion protein 24.8 83 0.0029 16.4 3.7 29 333-362 4-32 (32)
4 3arc_L Photosystem II reaction 21.6 1.2E+02 0.004 17.0 3.6 24 120-143 13-36 (37)
5 2jwa_A Receptor tyrosine-prote 18.4 1.7E+02 0.0057 17.4 3.6 12 353-364 32-43 (44)
6 1xl4_A Inward rectifier potass 17.8 1.1E+02 0.0039 26.6 4.1 60 286-364 82-141 (301)
7 2l9u_A Receptor tyrosine-prote 14.9 1.6E+02 0.0056 16.3 2.7 28 335-362 7-34 (40)
8 2zy9_A Mg2+ transporter MGTE; 14.2 5.8E+02 0.02 23.5 8.3 31 185-215 376-406 (473)
9 1v54_M VIIIB, IX, cytochrome C 12.1 1.8E+02 0.0063 17.4 2.6 28 337-364 16-43 (46)
10 2klu_A T-cell surface glycopro 12.0 2.7E+02 0.0091 18.2 3.5 10 355-364 31-40 (70)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.92 E-value=32 Score=20.56 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=8.2
Q ss_pred HHHHHHHHhcccccC
Q 042194 350 FLFAYCIGKLNFLRR 364 (364)
Q Consensus 350 ~l~~~~l~~~~~~~~ 364 (364)
.+.++.+|+++.++|
T Consensus 29 ~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHTTTCCSC
T ss_pred HHHHHHhhhhHhhcc
Confidence 455556666555543
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.11 E-value=32 Score=20.57 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=7.9
Q ss_pred HHHHHHHHhcccccC
Q 042194 350 FLFAYCIGKLNFLRR 364 (364)
Q Consensus 350 ~l~~~~l~~~~~~~~ 364 (364)
.+.++.+|++++++|
T Consensus 28 ~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 28 LTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHTTCSSCC
T ss_pred HHHHHHhhhhhhhhc
Confidence 444555665555543
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.79 E-value=83 Score=16.43 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=17.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 333 RLPITAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 333 ~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
.+|.-+..|++. +-|....+..+++.+++
T Consensus 4 tiweviaglval-ltflafgfwlfkylqkk 32 (32)
T 2lx0_A 4 TIWEVIAGLVAL-LTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp SSHHHHHHHHHH-HHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 467666666665 34555666677776543
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=21.61 E-value=1.2e+02 Score=17.03 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhh
Q 042194 120 SPSYNLTRIMHMTTSSLLFGVLFW 143 (364)
Q Consensus 120 ~~~~~~~~l~~~~~~~ll~g~~f~ 143 (364)
|+..++..++..+++++++..-|+
T Consensus 13 NRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 13 NRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhhhhcc
Confidence 445566666666667777666554
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.40 E-value=1.7e+02 Score=17.43 Aligned_cols=12 Identities=17% Similarity=0.003 Sum_probs=5.7
Q ss_pred HHHHHhcccccC
Q 042194 353 AYCIGKLNFLRR 364 (364)
Q Consensus 353 ~~~l~~~~~~~~ 364 (364)
.+.+|+++.++|
T Consensus 32 ~~~~RRR~~~~k 43 (44)
T 2jwa_A 32 GILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHCSCCC
T ss_pred Hhheehhhhhcc
Confidence 444555554443
No 6
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=17.82 E-value=1.1e+02 Score=26.63 Aligned_cols=60 Identities=12% Similarity=-0.060 Sum_probs=32.1
Q ss_pred hccChHHHHHHHHHHhhhcCCCceeeecCCCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 286 YYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 286 ~~~sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
++..-+.|++..+...-|++....| +.+. +...+..++++.+.-..++.+.-++.++++|
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t-------~~gr------------~~~~~~~l~G~~~~a~~~g~v~~~~~~~~~r 141 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIG-------PLAN------------TLVTLEALCGMLGLAVAASLIYARFTRPTAG 141 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCH-------HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCC-------HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4456667777777665555443322 1111 2234445555555555566666666666554
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=14.89 E-value=1.6e+02 Score=16.30 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=20.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcccc
Q 042194 335 PITAVVLIFYPLVLAFLFAYCIGKLNFL 362 (364)
Q Consensus 335 ~~~~~~L~~~~~~~~~l~~~~l~~~~~~ 362 (364)
...+.+..+..++|.++.--.|.|+-++
T Consensus 7 ~malt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 7 TMALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCceeEEEcccc
Confidence 3456677888899999888888776543
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=14.24 E-value=5.8e+02 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=20.5
Q ss_pred hhhhhHHhhhhhhHHHHHHHHHHhhhhcccc
Q 042194 185 RTVMYREVTVEIPYLLIQALAYVIISYPMIG 215 (364)
Q Consensus 185 r~~~~re~~~~~~~~~~~~~~~~~i~y~~~g 215 (364)
++++.||..+-+...++.+++..++.+++.|
T Consensus 376 ~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~ 406 (473)
T 2zy9_A 376 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH 406 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888777676666666666666665555
No 9
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=12.12 E-value=1.8e+02 Score=17.43 Aligned_cols=28 Identities=7% Similarity=-0.171 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194 337 TAVVLIFYPLVLAFLFAYCIGKLNFLRR 364 (364)
Q Consensus 337 ~~~~L~~~~~~~~~l~~~~l~~~~~~~~ 364 (364)
.++....+..++.-.+|+.-+..+.|||
T Consensus 16 aigl~v~f~~~L~PagWVLshL~~YKk~ 43 (46)
T 1v54_M 16 AIGLSVTFLSFLLPAGWVLYHLDNYKKS 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 3455555555566678888777777665
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=12.00 E-value=2.7e+02 Score=18.16 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=5.6
Q ss_pred HHHhcccccC
Q 042194 355 CIGKLNFLRR 364 (364)
Q Consensus 355 ~l~~~~~~~~ 364 (364)
+.|..+++||
T Consensus 31 cvkcrhRrrq 40 (70)
T 2klu_A 31 SVRSRHRRRQ 40 (70)
T ss_dssp HHHSSCCSSS
T ss_pred hhHHHHHHHH
Confidence 5566655553
Done!