Query 042197
Match_columns 249
No_of_seqs 151 out of 1569
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.7E-46 3.6E-51 326.3 15.1 238 2-246 2-239 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 5.7E-22 1.2E-26 148.1 6.4 86 133-218 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 8.9E-22 1.9E-26 147.1 5.1 86 8-98 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 9.4E-15 2E-19 127.7 6.9 92 129-220 4-96 (243)
5 COG4095 Uncharacterized conser 99.3 3.3E-12 7.2E-17 94.2 5.2 84 130-216 4-87 (89)
6 COG4095 Uncharacterized conser 99.2 6.1E-11 1.3E-15 87.5 8.3 83 6-96 5-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.7 6.1E-07 1.3E-11 78.2 14.9 188 11-207 6-213 (220)
8 PF04193 PQ-loop: PQ loop repe 98.0 1.3E-05 2.9E-10 55.4 5.8 53 11-65 4-56 (61)
9 PF04193 PQ-loop: PQ loop repe 98.0 1.5E-05 3.3E-10 55.1 5.4 56 132-190 3-58 (61)
10 KOG3211 Predicted endoplasmic 97.5 0.0027 5.9E-08 54.5 12.8 193 7-218 32-227 (230)
11 KOG2913 Predicted membrane pro 97.2 0.007 1.5E-07 54.1 12.5 202 7-217 7-249 (260)
12 TIGR00951 2A43 Lysosomal Cysti 95.4 0.019 4.2E-07 50.0 4.2 50 131-183 4-53 (220)
13 PHA02246 hypothetical protein 95.2 1.5 3.3E-05 36.3 14.4 173 12-206 8-185 (192)
14 PRK01021 lpxB lipid-A-disaccha 94.5 1 2.2E-05 45.0 13.7 160 38-209 37-214 (608)
15 PF03650 MPC: Uncharacterised 94.5 0.0056 1.2E-07 48.2 -1.6 65 159-223 39-105 (119)
16 smart00679 CTNS Repeated motif 93.7 0.07 1.5E-06 31.7 2.6 27 23-49 2-28 (32)
17 PF10688 Imp-YgjV: Bacterial i 93.3 1.8 4E-05 35.9 11.4 124 46-206 30-153 (163)
18 PF03650 MPC: Uncharacterised 93.2 0.051 1.1E-06 42.9 1.7 69 25-98 32-100 (119)
19 smart00679 CTNS Repeated motif 93.1 0.07 1.5E-06 31.7 1.9 28 148-175 2-29 (32)
20 KOG1589 Uncharacterized conser 92.5 0.13 2.9E-06 39.8 3.1 61 34-97 43-103 (118)
21 KOG1589 Uncharacterized conser 91.5 0.031 6.7E-07 43.2 -1.3 66 159-224 43-110 (118)
22 PHA02246 hypothetical protein 90.0 3.3 7.1E-05 34.3 9.0 66 16-85 116-181 (192)
23 PF10688 Imp-YgjV: Bacterial i 82.8 3.4 7.4E-05 34.3 5.7 38 46-88 118-155 (163)
24 KOG2913 Predicted membrane pro 81.4 2.5 5.5E-05 37.8 4.7 58 128-188 6-63 (260)
25 KOG3145 Cystine transporter Cy 76.7 48 0.001 30.5 11.2 85 133-220 266-361 (372)
26 KOG3211 Predicted endoplasmic 71.9 12 0.00026 32.5 6.0 72 21-96 154-225 (230)
27 COG3952 Predicted membrane pro 70.6 9.8 0.00021 29.4 4.6 82 132-217 27-108 (113)
28 PF07578 LAB_N: Lipid A Biosyn 60.0 8.2 0.00018 27.8 2.3 43 161-203 24-66 (72)
29 PF07578 LAB_N: Lipid A Biosyn 59.4 23 0.00049 25.5 4.5 51 25-82 14-65 (72)
30 KOG2489 Transmembrane protein 55.9 1E+02 0.0023 30.3 9.5 192 12-220 324-556 (592)
31 KOG4314 Predicted carbohydrate 48.0 23 0.0005 30.8 3.5 59 123-181 124-183 (290)
32 PF05602 CLPTM1: Cleft lip and 48.0 69 0.0015 30.7 7.2 72 10-85 303-374 (438)
33 PF09586 YfhO: Bacterial membr 46.8 3.4E+02 0.0074 27.9 14.3 26 12-40 222-247 (843)
34 PRK05771 V-type ATP synthase s 46.8 3.2E+02 0.0069 27.5 13.7 36 21-60 325-360 (646)
35 KOG2325 Predicted transporter/ 43.8 80 0.0017 31.0 6.9 23 196-218 211-233 (488)
36 PF01034 Syndecan: Syndecan do 42.7 9.7 0.00021 26.8 0.4 29 202-230 23-51 (64)
37 KOG3618 Adenylyl cyclase [Gene 39.0 3.6E+02 0.0078 28.5 10.7 94 48-146 88-181 (1318)
38 cd08764 Cyt_b561_CG1275_like N 36.0 2.8E+02 0.0062 24.0 8.5 23 130-152 96-118 (214)
39 PF01372 Melittin: Melittin; 35.3 75 0.0016 18.1 3.1 16 21-36 9-24 (26)
40 PRK11387 S-methylmethionine tr 34.9 83 0.0018 30.0 5.6 27 197-223 439-465 (471)
41 PF05875 Ceramidase: Ceramidas 34.4 3.2E+02 0.0069 23.9 12.7 47 14-60 30-76 (262)
42 PRK11387 S-methylmethionine tr 32.9 2.4E+02 0.0052 26.8 8.4 23 12-34 370-392 (471)
43 PF06027 DUF914: Eukaryotic pr 32.5 4.1E+02 0.0089 24.6 11.8 56 154-214 251-307 (334)
44 COG4145 PanF Na+/panthothenate 32.2 3.5E+02 0.0076 26.1 8.9 71 124-197 383-453 (473)
45 KOG1590 Uncharacterized conser 32.0 20 0.00044 28.3 0.7 76 146-223 36-113 (132)
46 PRK10746 putative transport pr 31.2 1.9E+02 0.0041 27.6 7.3 30 127-156 356-385 (461)
47 TIGR00341 conserved hypothetic 30.8 2.9E+02 0.0063 25.6 8.1 47 171-217 247-293 (325)
48 PF07690 MFS_1: Major Facilita 29.7 3.7E+02 0.0079 23.2 10.0 6 154-159 111-116 (352)
49 PF15102 TMEM154: TMEM154 prot 27.4 85 0.0018 25.7 3.6 30 191-220 60-89 (146)
50 PRK15049 L-asparagine permease 27.0 2.7E+02 0.0059 26.9 7.7 27 128-154 375-401 (499)
51 PRK10580 proY putative proline 26.4 4.8E+02 0.01 24.6 9.2 25 10-34 361-385 (457)
52 PF06123 CreD: Inner membrane 25.1 5.9E+02 0.013 24.6 9.4 49 133-192 356-405 (430)
53 PF06570 DUF1129: Protein of u 23.7 4.3E+02 0.0092 22.3 7.5 50 171-220 151-204 (206)
54 PF12794 MscS_TM: Mechanosensi 23.0 2.8E+02 0.0061 25.6 6.7 23 124-146 148-170 (340)
55 PF06946 Phage_holin_5: Phage 22.8 3.4E+02 0.0074 20.5 6.5 55 39-98 32-86 (93)
56 KOG1590 Uncharacterized conser 22.0 1.3E+02 0.0029 23.8 3.6 65 24-93 39-103 (132)
57 PF07857 DUF1632: CEO family ( 21.5 1.9E+02 0.0042 25.8 5.0 66 131-196 180-254 (254)
58 PF06930 DUF1282: Protein of u 21.1 4.6E+02 0.0099 21.3 9.4 27 21-47 2-28 (170)
59 PF07857 DUF1632: CEO family ( 21.0 1.4E+02 0.003 26.7 4.0 54 164-217 80-139 (254)
60 PF01102 Glycophorin_A: Glycop 20.8 82 0.0018 25.0 2.3 20 77-96 70-89 (122)
61 TIGR02003 PTS-II-BC-unk1 PTS s 20.2 3.4E+02 0.0074 27.0 6.9 20 189-210 412-431 (548)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=326.33 Aligned_cols=238 Identities=37% Similarity=0.693 Sum_probs=199.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHH
Q 042197 2 GDGLRLAFGVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIF 81 (249)
Q Consensus 2 ~~~~~~~~g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~ 81 (249)
.+....++|..|.+.|+++|++|+|+++||+||||+|+.++.||+++.+||.+|+.||. +.+ +|..++.+|++|..
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~--~~~--~d~llitIN~~G~~ 77 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGL--LKV--HDYLLITINGIGLV 77 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhh--hcc--CceEEEEEehhcHH
Confidence 35677899999999999999999999999999999999999999999999999999998 555 48999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhheeccccchhhhhhhHHHHHHHHHhhchhhhhhhhhccCC
Q 042197 82 LELSFILIYFLFASARDKIKVAAIVIPVILLFCITALVSAFVFHDHHHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKS 161 (249)
Q Consensus 82 ~~~~y~~~y~~y~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks 161 (249)
++++|+..|+.|+++|+..... .......+++..+.++...|+++.+.+.+|.+|.+++++||+||+..+++++|+||
T Consensus 78 ie~~Yi~~f~~ya~~k~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkS 155 (243)
T KOG1623|consen 78 IETVYISIFLYYAPKKKTVKIV--LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKS 155 (243)
T ss_pred HHHHHHHHHheecCchheeEee--ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCc
Confidence 9999999999999998842211 11122223333334555678888889999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccchhhHHHHHHhhheeeeecCCCcCCCCcccccccccccccceeEE
Q 042197 162 VEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLGILQLVLYWKYRKSGIIKEPNKWDLEKNGENSKKLQLAI 241 (249)
Q Consensus 162 ~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (249)
+|.||++++++.++++..|++||++++|.++.+||++|++++.+|+.+|+.|++++.++...+-++++.++++. +++++
T Consensus 156 vE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 234 (243)
T KOG1623|consen 156 VEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKIVPPKQNKKDVVVDEV-LLGTI 234 (243)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccccccccccCCcccccc-ccCCc
Confidence 99999999999999999999999999999999999999999999999999999888555343334444344444 34444
Q ss_pred ecccC
Q 042197 242 NNDIN 246 (249)
Q Consensus 242 ~~~~~ 246 (249)
.-|.+
T Consensus 235 ~~~~~ 239 (243)
T KOG1623|consen 235 VVDEP 239 (243)
T ss_pred ccCCc
Confidence 44443
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=5.7e-22 Score=148.13 Aligned_cols=86 Identities=34% Similarity=0.588 Sum_probs=84.2
Q ss_pred hhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccchhhHHHHHHhhheee
Q 042197 133 FVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLGILQLVLYWK 212 (249)
Q Consensus 133 ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~ 212 (249)
++|.+|.+.++++++||++++++++|+|+++++|+.|+++.++||.+|+.||++++|++++++|++|.+++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 042197 213 YRKSGI 218 (249)
Q Consensus 213 y~~~~~ 218 (249)
|+++||
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 999886
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=8.9e-22 Score=147.09 Aligned_cols=86 Identities=23% Similarity=0.678 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHH
Q 042197 8 AFGVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFI 87 (249)
Q Consensus 8 ~~g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~ 87 (249)
++|++|.++++++++||+|+++|++|+||+|++++.|++++.+||.+|+.||+ +.+ |++++.+|++|.+++.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~--l~~---d~~i~~~N~~g~~~~~~~~ 76 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGI--LIN---DWPIIVPNVFGLVLSIIYL 76 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhh--hcC---CeeEEeeHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998 776 7899999999999999999
Q ss_pred HHHHHhccchh
Q 042197 88 LIYFLFASARD 98 (249)
Q Consensus 88 ~~y~~y~~~~~ 98 (249)
.+|++|+++||
T Consensus 77 ~~~~~y~~~~~ 87 (87)
T PF03083_consen 77 VVYYIYPSKKK 87 (87)
T ss_pred hheEEeCCCCC
Confidence 99999999875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.54 E-value=9.4e-15 Score=127.69 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=86.9
Q ss_pred chhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccC-CeeeeeccchhhHHHHHHh
Q 042197 129 HRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSH-DLFIASPSFVGGPLGILQL 207 (249)
Q Consensus 129 ~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~-d~~i~~~N~~G~~l~~~ql 207 (249)
....++|..|++.++++|.+|+|+++|+.|+||+|+.+..|++++++||.+|+.||++.+ |..++..|++|+++..+|+
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999987 8999999999999999999
Q ss_pred hheeeeecCCCcC
Q 042197 208 VLYWKYRKSGIIK 220 (249)
Q Consensus 208 ~l~~~y~~~~~~~ 220 (249)
..|+.|.++|++.
T Consensus 84 ~~f~~ya~~k~~~ 96 (243)
T KOG1623|consen 84 SIFLYYAPKKKTV 96 (243)
T ss_pred HHHheecCchhee
Confidence 9999999988833
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3.3e-12 Score=94.17 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=77.3
Q ss_pred hhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccchhhHHHHHHhhh
Q 042197 130 RKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLGILQLVL 209 (249)
Q Consensus 130 ~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l 209 (249)
..+++|.+|+..+..+| +||..+++|+||++++++.+++.....+.+|+.||++++|.++...|.+++.++.+-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 35788999999999999 799999999999999999999999999999999999999999999999999999988777
Q ss_pred eeeeecC
Q 042197 210 YWKYRKS 216 (249)
Q Consensus 210 ~~~y~~~ 216 (249)
...|..+
T Consensus 81 kI~~~~k 87 (89)
T COG4095 81 KIKYILK 87 (89)
T ss_pred HHHHHHh
Confidence 6666544
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=6.1e-11 Score=87.52 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHH
Q 042197 6 RLAFGVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELS 85 (249)
Q Consensus 6 ~~~~g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~ 85 (249)
.+.+|..|++.+. ++-+||..+++|+|+++++|+..|+.....+++|+.||+ +.+ +.|+...|.++..++.+
T Consensus 5 ~~viG~ia~iltt---f~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI--Li~---~lPii~aN~i~~il~li 76 (89)
T COG4095 5 IEVIGTIAGILTT---FAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI--LIN---DLPIIIANIISFILSLI 76 (89)
T ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH--HHc---cCcchhHHHHHHHHHHH
Confidence 4455665555554 556999999999999999999999999999999999998 886 89999999999999998
Q ss_pred HHHHHHHhccc
Q 042197 86 FILIYFLFASA 96 (249)
Q Consensus 86 y~~~y~~y~~~ 96 (249)
-++...+|..+
T Consensus 77 Il~~kI~~~~k 87 (89)
T COG4095 77 ILFYKIKYILK 87 (89)
T ss_pred HHHHHHHHHHh
Confidence 88777777543
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.71 E-value=6.1e-07 Score=78.19 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHh--------ccccccccCCceEe---eehhhHH
Q 042197 11 VMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWY--------ALPVVSYRWENFTV---VTINGLG 79 (249)
Q Consensus 11 ~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~Y--------G~~~l~~~~~~~~i---~~~N~~g 79 (249)
.+|.+...+-..+-+||+.+.+|+||++++|+..+..-..+..+|..| .. .+ +.+.- +..|-+-
T Consensus 6 ~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~---~~--~~~~~~~~v~~edl~ 80 (220)
T TIGR00951 6 ILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSI---TN--EFPLSSPGVTQNDVF 80 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhh---hh--ccccccCCCcHHHHH
Confidence 344444445556689999999999999999999999999999999998 32 11 11111 1113333
Q ss_pred HHHHHHH-----HHHHHHhccchhHH--HHHH-HHHHHHHHHHHHHHhhhheeccccchhhhhhhHHHHHHHHHhhchhh
Q 042197 80 IFLELSF-----ILIYFLFASARDKI--KVAA-IVIPVILLFCITALVSAFVFHDHHHRKLFVGSIGLGASITMYSSPLV 151 (249)
Q Consensus 80 ~~~~~~y-----~~~y~~y~~~~~~~--~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~~ilG~ia~i~ti~~~~sPl~ 151 (249)
..++... ..-..+|.++.++. .... .....+..++... .....-..+.+....++.+...++++-+ +|
T Consensus 81 ~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~l~~iki~is~iky---iP 156 (220)
T TIGR00951 81 FTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLL-VALLSPITPLAFVTMLSYIKVAVTLVKY---FP 156 (220)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHH---hH
Confidence 2222222 22222333322221 1111 1111111111111 1112112344455566666666666555 89
Q ss_pred hhhhhhccCCccccchhHHHHHHHhHHHHHhhhhc-cCCeeeeeccchhhHHHHHHh
Q 042197 152 AVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLL-SHDLFIASPSFVGGPLGILQL 207 (249)
Q Consensus 152 ~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l-~~d~~i~~~N~~G~~l~~~ql 207 (249)
|++.-.|.|||++.|......-+..++.-..-... .+|...+..-..++++..+.+
T Consensus 157 Qi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 157 QAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887666655553 366666666666776666544
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.04 E-value=1.3e-05 Score=55.39 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccc
Q 042197 11 VMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSY 65 (249)
Q Consensus 11 ~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~ 65 (249)
.+|.+..++...+.+||+++.+|+|+++++|...+.....+..+|+.|.+ +.+
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~--~~~ 56 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI--LSN 56 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH--Hhc
Confidence 34555556667778999999999999999999999999999999999997 654
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.99 E-value=1.5e-05 Score=55.11 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCe
Q 042197 132 LFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDL 190 (249)
Q Consensus 132 ~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~ 190 (249)
.++|.++.++....+ +||+.+.+|+|+++++++......+.++.+|+.|++..++.
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456777776666655 89999999999999999999999999999999999987654
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.52 E-value=0.0027 Score=54.48 Aligned_cols=193 Identities=12% Similarity=0.115 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHH
Q 042197 7 LAFGVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSF 86 (249)
Q Consensus 7 ~~~g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y 86 (249)
..+|+.-...++.. -+||+-+|+..||++++|...+..-+++-..-+.|.+ .+ +.++.-.--.+=++++.+-
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~---~~--g~pFss~gE~~fLl~Q~vi 103 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY---TS--GYPFSSYGEYPFLLLQAVI 103 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh---hc--CCCchhHHHHHHHHHHHHH
Confidence 34444444444444 6999999999999999999999988888888888885 33 3444333333445555544
Q ss_pred HHHHH-HhccchhH-HHHHHHHHHHHHHHHHHHHhhhheeccccchhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccc
Q 042197 87 ILIYF-LFASARDK-IKVAAIVIPVILLFCITALVSAFVFHDHHHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEF 164 (249)
Q Consensus 87 ~~~y~-~y~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~ 164 (249)
+..+. .|+-.... ...+..... ... . + .....-..++-...+...-+.-.+-++|+..-+|+|+++.
T Consensus 104 li~~if~f~~~~~~~v~~l~~~~~----v~~----~-~--~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgq 172 (230)
T KOG3211|consen 104 LILCIFHFSGQTVTVVQFLGYIAL----VVS----V-L--ASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQ 172 (230)
T ss_pred HHHHHHHhccceeehhhHHHHHHH----HHH----H-H--HHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccch
Confidence 43333 34311111 111111110 100 0 0 0112223333444444443444677899999999999999
Q ss_pred cchhHHHHHHHhHHHHHhhhhc-cCCeeeeeccchhhHHHHHHhhheeeeecCCC
Q 042197 165 MPFHLSFFSFLTSAIWMVYGLL-SHDLFIASPSFVGGPLGILQLVLYWKYRKSGI 218 (249)
Q Consensus 165 i~~~~~~~~~~n~~~W~~YG~l-~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~ 218 (249)
.++.....++-.|.--..|... ++|..++..-.+..+++..-.+-.++|++++.
T Consensus 173 ls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 173 LSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 9999999999999999999998 47888877777777777666666666665443
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.23 E-value=0.007 Score=54.10 Aligned_cols=202 Identities=16% Similarity=0.103 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHH
Q 042197 7 LAFGVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSF 86 (249)
Q Consensus 7 ~~~g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y 86 (249)
+.-..+|++.+.+--.+-.||+....|+|+++++|+.+.+.-.+....=+.|.. +.+ -.++...-..=..++...
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~--l~~---~~~~~~~~~~yy~~~d~~ 81 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFF--LQP---LGSTLKVQAVYYTLADSV 81 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHH--hcc---cchhHHHHHHHHHHHHHH
Confidence 344556777777777788999999999999999999999988888888888886 554 222222222222222222
Q ss_pred HHHHHHhccchhH---------HHHHHH----HH----------------HHHHHHHHHHHhh---hhee--cc-cc-ch
Q 042197 87 ILIYFLFASARDK---------IKVAAI----VI----------------PVILLFCITALVS---AFVF--HD-HH-HR 130 (249)
Q Consensus 87 ~~~y~~y~~~~~~---------~~~~~~----~~----------------~~~~l~~~~~l~~---~~~~--~~-~~-~~ 130 (249)
+.....|.+.+.+ .+.... .. ......+.+.... +... .. .+ ..
T Consensus 82 l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (260)
T KOG2913|consen 82 LFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLE 161 (260)
T ss_pred HHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhh
Confidence 3333333222211 000000 00 0000011111011 0100 01 11 22
Q ss_pred hhhhhhHHH-HHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccch----hhHHHHH
Q 042197 131 KLFVGSIGL-GASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFV----GGPLGIL 205 (249)
Q Consensus 131 ~~ilG~ia~-i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~----G~~l~~~ 205 (249)
.+.+|.+.. +.+.+-.++.+||+..-+|.|+++++++.++....+.+. .|+.-. ...--.|+.. +..+-+.
T Consensus 162 ~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~---~y~~s~-~~~~n~~w~~~~~~~~~~D~~ 237 (260)
T KOG2913|consen 162 IDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNT---TYILSS-YLVTNLPWLVDSKGTIYLDIF 237 (260)
T ss_pred hcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcccc---cccccc-ccccCCcccccCCcchhHHHH
Confidence 334555544 444555789999999999999999999877666665553 555541 1111123322 2344444
Q ss_pred HhhheeeeecCC
Q 042197 206 QLVLYWKYRKSG 217 (249)
Q Consensus 206 ql~l~~~y~~~~ 217 (249)
...=++.|++.|
T Consensus 238 ~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 238 IFLQFFNYRASK 249 (260)
T ss_pred HHHHHHHhhccc
Confidence 455566666555
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.42 E-value=0.019 Score=50.03 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=44.3
Q ss_pred hhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhh
Q 042197 131 KLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVY 183 (249)
Q Consensus 131 ~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~Y 183 (249)
...+|....++....+ +||+.+.+|+||++++|+......+.....|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 3567887777777766 8999999999999999999999999999999999
No 13
>PHA02246 hypothetical protein
Probab=95.19 E-value=1.5 Score=36.27 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHH
Q 042197 12 MGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYF 91 (249)
Q Consensus 12 l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~ 91 (249)
+...-++.....-.|+.+.+.|.|+++++|- .|+-......+-..|-+ +..+..++.++. -+....+++..+.+--
T Consensus 8 ~s~~yailit~gYipgL~slvk~~nv~GvS~-~FWYLi~~tvgiSfyNl--L~T~~~~fqi~s-vg~nl~lgivcLlv~~ 83 (192)
T PHA02246 8 LSILYAILITVGYIPGLVALVKAESVKGVSN-YFWYLIVATVGISFYNL--LLTDASVFQIVS-VGLNLTLGIVCLLVAS 83 (192)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhhcccccHHH-HHHHHHHHHHHHHHHHH--HhcCCceEEEee-eehhhhhhhhheeeeh
Confidence 3344455556667999999999999999874 45666667778888987 544333454443 4444555555543221
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhhheeccccchhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHH
Q 042197 92 LFASARDKIKVAAIVIPVILLFCITALVSAFVFHDHHHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSF 171 (249)
Q Consensus 92 ~y~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~ 171 (249)
| |||.... ..+.. +++.+. +. ..+..+.. -.+|...-+. +.++|+.+-+|||++|+.+++.++
T Consensus 84 -~--rkkd~f~-~~fii---ifSLll-fl---l~~~~evt---QtVat~tIiL---aYi~QIIqfyKTK~SEg~n~~l~l 146 (192)
T PHA02246 84 -Y--RKKDYFS-IPFII---VFSLLL-FL---LSDFTALT---QTVATITIIL---AYVTQITTFYKTKSAEGTNRFLFL 146 (192)
T ss_pred -h--hcccccc-chHHH---HHHHHH-HH---HhhhHHHH---HHHHHHHHHH---HHHHHHHHHhhhcccCCCChhHHH
Confidence 1 1122111 11111 122111 11 11111122 2223332233 337999999999999999987765
Q ss_pred HHHHhHHHHHhhhhccCC--eeeeec---cchhhHHHHHH
Q 042197 172 FSFLTSAIWMVYGLLSHD--LFIASP---SFVGGPLGILQ 206 (249)
Q Consensus 172 ~~~~n~~~W~~YG~l~~d--~~i~~~---N~~G~~l~~~q 206 (249)
..... +.-+.....+.+ .++++. |.+=...|..|
T Consensus 147 ii~~G-L~~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 147 IIGLG-LASLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred HHHHH-HHHHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 44332 223344444433 344443 54444444433
No 14
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.50 E-value=1 Score=45.00 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=88.2
Q ss_pred CCccchhHHH-HHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccchhHHHHH-H--HHHHHHHHH
Q 042197 38 EGFSCFPYII-ALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASARDKIKVA-A--IVIPVILLF 113 (249)
Q Consensus 38 g~~s~~p~~~-~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~~~~~~~~-~--~~~~~~~l~ 113 (249)
..+.|.-|+. ...++.+=+.||+ +.. +++++.-..+|.++..=-+.+ -.+.+...+.. . ++.+.+..+
T Consensus 37 ~s~~p~~FW~~Sl~g~~~l~~y~~--~~~---~~~~~~~q~~~~~iy~rNl~l---~~~~~~~~~~~~~~~~~~~~~~~~ 108 (608)
T PRK01021 37 YSYVPKIFWILSSIGAVLMICHGF--IQS---QFPIALLHSFNLIIYFRNLNI---ASSRPLSVSKTLSLLVLSATAITL 108 (608)
T ss_pred CccCchHHHHHHHHHHHHHHHHHH--Hhc---CCcEEEecccceEEEeehhhh---cccccchHHHHHHHHHhhhHhhhh
Confidence 3455666644 6788999999997 654 678887666665432211111 11122222221 1 111111112
Q ss_pred HHHH-Hhhhhee---------cc-ccchh---hhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHH
Q 042197 114 CITA-LVSAFVF---------HD-HHHRK---LFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAI 179 (249)
Q Consensus 114 ~~~~-l~~~~~~---------~~-~~~~~---~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~ 179 (249)
-+.. .+.+... +. -++.. ..+|.+|..+-..=| +-|-..- +++..+.+|...-..+++.+.+
T Consensus 109 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~~Qw~~s-e~~~~s~~p~~FW~~s~~G~~~ 184 (608)
T PRK01021 109 PFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---FIQWFYL-EYNNQSALPALFWKASLLGGSL 184 (608)
T ss_pred HHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---HHHHHHH-HhcCCCCCcHHHHHHHHHhHHH
Confidence 1111 1112111 11 02222 355666655444333 3332222 3334456677777899999999
Q ss_pred HHhhhhccCCeeeeeccchhhHHHHHHhhh
Q 042197 180 WMVYGLLSHDLFIASPSFVGGPLGILQLVL 209 (249)
Q Consensus 180 W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l 209 (249)
-++|++..+|...++..++|.+...=.+.+
T Consensus 185 ~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~l 214 (608)
T PRK01021 185 ALLYFIRTGDPVNILCYGCGLFPSLANLRI 214 (608)
T ss_pred HHHHHHHhCCceEEEccccchhHHHHHHHH
Confidence 999999999999999999999866666533
No 15
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.46 E-value=0.0056 Score=48.24 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=57.1
Q ss_pred cCCccccchhHHHHHHHhHHHHHhhhhcc--CCeeeeeccchhhHHHHHHhhheeeeecCCCcCCCC
Q 042197 159 TKSVEFMPFHLSFFSFLTSAIWMVYGLLS--HDLFIASPSFVGGPLGILQLVLYWKYRKSGIIKEPN 223 (249)
Q Consensus 159 tks~~~i~~~~~~~~~~n~~~W~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~ 223 (249)
+|..|.+|..+..+.++.+.+|+-|++.+ .|+.++..|.+-...+..|+.=+..|...+++.+++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Confidence 58999999999999999999999999997 688888889999999999999888887766665444
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.71 E-value=0.07 Score=31.71 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCCCCccchhHHHHH
Q 042197 23 TPILTFSRVIKKKSTEGFSCFPYIIAL 49 (249)
Q Consensus 23 splp~~~~i~k~ks~g~~s~~p~~~~~ 49 (249)
+-+||+.+++|+|+++++|...+....
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 458999999999999999876665443
No 17
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=93.33 E-value=1.8 Score=35.86 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhheec
Q 042197 46 IIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASARDKIKVAAIVIPVILLFCITALVSAFVFH 125 (249)
Q Consensus 46 ~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 125 (249)
......|.++...-. +-+ .+ +-+.+..++..-..+-.++.+ +.....+.....+. +..
T Consensus 30 ~~~~~~~~~~~ihf~--LLG---a~----taa~~~~ls~~R~~~s~~~~~----~~v~~~Fi~~~~~~------~~~--- 87 (163)
T PF10688_consen 30 LLQAISCLLFAIHFA--LLG---AW----TAALSMLLSAVRNFVSIRTRS----RWVMAVFIALSLVM------GLF--- 87 (163)
T ss_pred HHHHHHHHHHHHHHH--HhC---hH----HHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHH------HHH---
Confidence 345556666655554 333 22 355566666665555555443 21212222111111 222
Q ss_pred cccchhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccchhhHHHHH
Q 042197 126 DHHHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLGIL 205 (249)
Q Consensus 126 ~~~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ 205 (249)
+.+.-.+.++.+|++....... ..+ +.. +=....+++.+|..|++..++++-..-|......+..
T Consensus 88 ~~~g~~~~l~~~as~~~t~a~f-----~~~--------~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~ 152 (163)
T PF10688_consen 88 TWQGWIELLPYAASVLGTIALF-----MLD--------GIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLI 152 (163)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-----hcC--------chh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 2244567778887776665431 111 112 2256889999999999999999888888777765554
Q ss_pred H
Q 042197 206 Q 206 (249)
Q Consensus 206 q 206 (249)
.
T Consensus 153 ~ 153 (163)
T PF10688_consen 153 T 153 (163)
T ss_pred H
Confidence 4
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=93.17 E-value=0.051 Score=42.86 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccchh
Q 042197 25 ILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASARD 98 (249)
Q Consensus 25 lp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~~~ 98 (249)
+..+.++ +|..+.+|.-+-.++.+.+.+|+.|++ ++++ .|+.++.+|.+-...+.+++.=+..|....+
T Consensus 32 iA~i~D~--~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P--~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 32 IAGIADM--KRPPEKISGPQTSALCATGLIWMRYSL-VITP--RNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred eeehhhc--CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecC--chHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444 578999999999999999999999999 5666 6899999999999999999987777755443
No 19
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.11 E-value=0.07 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=23.0
Q ss_pred chhhhhhhhhccCCccccchhHHHHHHH
Q 042197 148 SPLVAVKQVIRTKSVEFMPFHLSFFSFL 175 (249)
Q Consensus 148 sPl~~i~~viktks~~~i~~~~~~~~~~ 175 (249)
+-+||+.+.+|+|+++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4589999999999999999877665443
No 20
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.13 Score=39.75 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=53.1
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccch
Q 042197 34 KKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASAR 97 (249)
Q Consensus 34 ~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~~ 97 (249)
.|..+.+|...........+.|..|++ +.++ .|+.++.+|.+=.+.+++++.=.+.|....
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~P--kN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~ 103 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITP--KNYSLFSVNFFVAITGIYQLTRIANYQQQQ 103 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEec--cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998 5666 689999999999999999999888885443
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.53 E-value=0.031 Score=43.19 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=56.0
Q ss_pred cCCccccchhHHHHHHHhHHHHHhhhhcc--CCeeeeeccchhhHHHHHHhhheeeeecCCCcCCCCc
Q 042197 159 TKSVEFMPFHLSFFSFLTSAIWMVYGLLS--HDLFIASPSFVGGPLGILQLVLYWKYRKSGIIKEPNK 224 (249)
Q Consensus 159 tks~~~i~~~~~~~~~~n~~~W~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~ 224 (249)
.|..|.+|....++.+..+++|+-|++.+ +|+.+...|++=.+.+.+|+.=.+.|....++.|.++
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~~~~~~~ 110 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQKALEGES 110 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 45778888999999999999999999997 7999999999999999999999888866655554443
No 22
>PHA02246 hypothetical protein
Probab=89.97 E-value=3.3 Score=34.32 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=44.0
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHH
Q 042197 16 ASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELS 85 (249)
Q Consensus 16 ~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~ 85 (249)
+++...++-+||+.+-+|+|+.|+.|+.-|+....+-.+-..==. +++ -...++++....+.+-.+
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~--Lth--v~~hIiiTEf~N~iLiLi 181 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMV--LTH--TYVHIIATEFVNFVLILI 181 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHh--hhC--CcceeeHHHHHHHHHHHH
Confidence 344455667999999999999999998888776555444333332 555 346677776666555443
No 23
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=82.77 E-value=3.4 Score=34.25 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHH
Q 042197 46 IIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFIL 88 (249)
Q Consensus 46 ~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~ 88 (249)
..+.+++.+|+.|++ +.+ .++....|......+.+.+.
T Consensus 118 ~~~l~~~~~w~~~n~--~ig---S~~g~l~e~~~~~~n~~~i~ 155 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNI--LIG---SWGGTLMEALFIISNLITIY 155 (163)
T ss_pred HHHHHHHHHHHHHHH--HHc---CHHHHHHHHHHHHHHHHHHH
Confidence 458899999999998 777 68888888888888775543
No 24
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=81.41 E-value=2.5 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=46.6
Q ss_pred cchhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccC
Q 042197 128 HHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSH 188 (249)
Q Consensus 128 ~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~ 188 (249)
+......|.+..++....+ .||+.+..|+|+.+++|+.+.+........=..|..+.+
T Consensus 6 ~~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 3445566666666666666 799999999999999999999888888888878877765
No 25
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=76.71 E-value=48 Score=30.54 Aligned_cols=85 Identities=8% Similarity=-0.109 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhH----HHHHHHhHHHHHhhhhccCCeeeeeccchh-------hH
Q 042197 133 FVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHL----SFFSFLTSAIWMVYGLLSHDLFIASPSFVG-------GP 201 (249)
Q Consensus 133 ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~----~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G-------~~ 201 (249)
.+..+-..+|.+=| +||.+.-.+.||+++-|.-= +-.+.++-+...+-..-.+||--+..|--- ++
T Consensus 266 ~~syiKl~mTliKY---iPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~ 342 (372)
T KOG3145|consen 266 NLSYIKLAMTLIKY---IPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIF 342 (372)
T ss_pred HHHHHHHHHHHHHh---hhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHH
Confidence 34455555555556 79999999999999876432 234455555555555556666666665332 23
Q ss_pred HHHHHhhheeeeecCCCcC
Q 042197 202 LGILQLVLYWKYRKSGIIK 220 (249)
Q Consensus 202 l~~~ql~l~~~y~~~~~~~ 220 (249)
+.++.+.=.+.+.++++..
T Consensus 343 FdiiFm~QhyVly~~~~~~ 361 (372)
T KOG3145|consen 343 FDIIFMMQHYVLYPRGHVL 361 (372)
T ss_pred HHHHHHhhheeEecccccc
Confidence 3333444445555555544
No 26
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=71.91 E-value=12 Score=32.48 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=58.6
Q ss_pred HHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccc
Q 042197 21 YATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASA 96 (249)
Q Consensus 21 ~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~ 96 (249)
-.+=++|+..-.|+|++|..+.+........|..=+.|.. ... +|+.+...-.+..+++.+-..-..+|.+.
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi--q~t--~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI--QET--GDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH--Hhc--CChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3566899999999999999999999999999999999997 544 68888888888888887766666655443
No 27
>COG3952 Predicted membrane protein [Function unknown]
Probab=70.58 E-value=9.8 Score=29.42 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred hhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccchhhHHHHHHhhhee
Q 042197 132 LFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLGILQLVLYW 211 (249)
Q Consensus 132 ~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~ 211 (249)
..+|..|..+-..=| +-| +-..+.++.+.+|.+.--++.+.+.+-+.|.+-++|..-+..|+.|++.++..+-+..
T Consensus 27 ~LiG~~g~~lFt~Rf---~VQ-w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 27 KLIGFSGQLLFTGRF---VVQ-WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHH
Confidence 345666554433333 122 2345677778889888899999999999999999999888999999998887766554
Q ss_pred eeecCC
Q 042197 212 KYRKSG 217 (249)
Q Consensus 212 ~y~~~~ 217 (249)
.-++.|
T Consensus 103 ker~~~ 108 (113)
T COG3952 103 KERRWK 108 (113)
T ss_pred HHhccc
Confidence 433333
No 28
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=60.00 E-value=8.2 Score=27.80 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=34.7
Q ss_pred CccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccchhhHHH
Q 042197 161 SVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLG 203 (249)
Q Consensus 161 s~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~ 203 (249)
..+.+|..--..+...+.+-++||+..+|...++...+|.+..
T Consensus 24 k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 24 KKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 3355677777889999999999999999998877777777643
No 29
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=59.42 E-value=23 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHHhccccccccCCceEeeehhhHHHHH
Q 042197 25 ILTFSRVIKKKSTEGFSCFPY-IIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFL 82 (249)
Q Consensus 25 lp~~~~i~k~ks~g~~s~~p~-~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~ 82 (249)
+-|-..-.|+|. +.-|..| .....++.+=+.||+ ..+ |+..+....+|.++
T Consensus 14 ~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~i--~r~---DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYAI--IRK---DPVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHHH--HHc---ChHHHHHHhcChHH
Confidence 444444444443 3444555 557888999999998 764 77666666666554
No 30
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=55.85 E-value=1e+02 Score=30.34 Aligned_cols=192 Identities=18% Similarity=0.184 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHH---
Q 042197 12 MGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFIL--- 88 (249)
Q Consensus 12 l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~--- 88 (249)
+..+.++.=|++-=.++.=+.|+||-+++|.-..+.-++.++.=.+|= +.+ +.++-|.++-++|+++...=+-
T Consensus 324 VS~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDn-eTs~mVlvs~gvG~~IE~WKi~K~m 399 (592)
T KOG2489|consen 324 VSILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDN-ETSFMVLVSVGVGLLIELWKIKKAM 399 (592)
T ss_pred HHHHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecC-CccEEEEEeccceeeeeeeecceEE
Confidence 455556666777777888899999999999988888888888878886 444 3578889999999988763221
Q ss_pred ---------HH-----------HHhccchhHH------HHHHHHHHHHHHHHHHHHhhhheeccccchhhhhhhHHHHHH
Q 042197 89 ---------IY-----------FLFASARDKI------KVAAIVIPVILLFCITALVSAFVFHDHHHRKLFVGSIGLGAS 142 (249)
Q Consensus 89 ---------~y-----------~~y~~~~~~~------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ilG~ia~i~t 142 (249)
+. -.|+.++.+. +-+.-.+.- ++.+. .+++.+..+...-...++..+.+.+-
T Consensus 400 ~v~id~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~P-L~vg~-aVYSLlY~~hKsWYSWvLn~l~~~vy 477 (592)
T KOG2489|consen 400 KVEIDWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFP-LLVGG-AVYSLLYVEHKSWYSWVLNSLYNGVY 477 (592)
T ss_pred EEEEecccccccccccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHH-HHHhhhhcccccHHHHHHHHHHhHHH
Confidence 11 1122222111 111111111 11221 12333434444556678888888888
Q ss_pred HHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhcc------------CCeeeeeccchhhHHHHHHhhhe
Q 042197 143 ITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLS------------HDLFIASPSFVGGPLGILQLVLY 210 (249)
Q Consensus 143 i~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~------------~d~~i~~~N~~G~~l~~~ql~l~ 210 (249)
..-|+-.+||+---.|-||...+|-.++.-=++|.++==++++.+ +|..- ++|+.=-
T Consensus 478 ~FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVF-----------lIYLYQR 546 (592)
T KOG2489|consen 478 AFGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVF-----------LIYLYQR 546 (592)
T ss_pred HHHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEE-----------Eeeehhh
Confidence 888889999999999999999999999988888887654444433 44322 2355556
Q ss_pred eeeecCCCcC
Q 042197 211 WKYRKSGIIK 220 (249)
Q Consensus 211 ~~y~~~~~~~ 220 (249)
|+||-.+.|.
T Consensus 547 WlYpVD~tRv 556 (592)
T KOG2489|consen 547 WLYPVDKTRV 556 (592)
T ss_pred hccccChhhh
Confidence 8888777665
No 31
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=47.99 E-value=23 Score=30.82 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=45.4
Q ss_pred eeccccchhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhH-HHHH
Q 042197 123 VFHDHHHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTS-AIWM 181 (249)
Q Consensus 123 ~~~~~~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~-~~W~ 181 (249)
.+.+++...+++|..|++.+..|-+-.=..+++.+-+-+-++.+.-+.-.+++|- +.|.
T Consensus 124 ay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 124 AYADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred EeccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 3457888999999999999988876656678888888888888777776666663 4443
No 32
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=47.99 E-value=69 Score=30.66 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHH
Q 042197 10 GVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELS 85 (249)
Q Consensus 10 g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~ 85 (249)
-+++.+.++.=|++-=.++.-|+++||.+++|.-..+.-++....=++|= +.+ +..+.|++++++|+++++.
T Consensus 303 ~~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~-~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 303 FVVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDN-ETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeC-CCcEEeehHhHhHHhHhhe
Confidence 34556667788888889999999999999999887777666666666665 443 3579999999999999874
No 33
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=46.82 E-value=3.4e+02 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCCc
Q 042197 12 MGNAASLLLYATPILTFSRVIKKKSTEGF 40 (249)
Q Consensus 12 l~~i~s~~~~~splp~~~~i~k~ks~g~~ 40 (249)
+|...+..+ -+|.+..+.+++.++..
T Consensus 222 lg~~lsa~~---llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 222 LGVGLSAFL---LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHH---HHHHHHHHHhCCCccCC
Confidence 444444333 37888888888877765
No 34
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.82 E-value=3.2e+02 Score=27.49 Aligned_cols=36 Identities=6% Similarity=0.315 Sum_probs=28.5
Q ss_pred HHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcc
Q 042197 21 YATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYAL 60 (249)
Q Consensus 21 ~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~ 60 (249)
+..|+..+-+++-.=+-++++|.|+++... ++++|.
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFGm 360 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFGM 360 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHHH
Confidence 456788888888887888999999987644 688897
No 35
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=43.85 E-value=80 Score=30.96 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=12.0
Q ss_pred cchhhHHHHHHhhheeeeecCCC
Q 042197 196 SFVGGPLGILQLVLYWKYRKSGI 218 (249)
Q Consensus 196 N~~G~~l~~~ql~l~~~y~~~~~ 218 (249)
..+.+++.+.++.+...+-+|.+
T Consensus 211 ~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 211 AWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHHHHHHHHHHHHHHHhheeecc
Confidence 45556666666555544433333
No 36
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=42.68 E-value=9.7 Score=26.78 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=3.5
Q ss_pred HHHHHhhheeeeecCCCcCCCCccccccc
Q 042197 202 LGILQLVLYWKYRKSGIIKEPNKWDLEKN 230 (249)
Q Consensus 202 l~~~ql~l~~~y~~~~~~~~~~~~~~~~~ 230 (249)
+..+-++++++|+-+||.+.+-.+||.+.
T Consensus 23 l~ailLIlf~iyR~rkkdEGSY~l~e~K~ 51 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKKDEGSYDLDEPKP 51 (64)
T ss_dssp --------------S------SS--S---
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCc
Confidence 44556788999999999998888888774
No 37
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=39.02 E-value=3.6e+02 Score=28.47 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhheeccc
Q 042197 48 ALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASARDKIKVAAIVIPVILLFCITALVSAFVFHDH 127 (249)
Q Consensus 48 ~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 127 (249)
..+.|++|.+|=. +.++.. +...++-.+++..-+.-++.+..+++--++.+....+...++++++.+ +.+.....
T Consensus 88 I~~~~l~W~lYfa--v~~rs~-fi~~~~~slc~lslv~~mf~~ft~~~lY~rhy~~TS~~~tlLvc~~tL--a~ltat~r 162 (1318)
T KOG3618|consen 88 IGFACLLWSLYFA--VHMRSR-FIVMVAPSLCFLSLVCVMFFLFTFTKLYARHYAWTSLALTLLVCALTL--ANLTATAR 162 (1318)
T ss_pred HHHHHHHHHHHhe--eccCce-eeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHhhhccc
Confidence 4556899999987 666332 555555555544222222222222222222233232222333333221 22322222
Q ss_pred cchhhhhhhHHHHHHHHHh
Q 042197 128 HHRKLFVGSIGLGASITMY 146 (249)
Q Consensus 128 ~~~~~ilG~ia~i~ti~~~ 146 (249)
.....-+|.++..+.+...
T Consensus 163 ~af~spvgsfa~c~evvlL 181 (1318)
T KOG3618|consen 163 PAFLSPVGSFAMCIEVVLL 181 (1318)
T ss_pred hhhhCchhHHHHHHHHHHH
Confidence 2444667888888877654
No 38
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.00 E-value=2.8e+02 Score=24.05 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=16.2
Q ss_pred hhhhhhhHHHHHHHHHhhchhhh
Q 042197 130 RKLFVGSIGLGASITMYSSPLVA 152 (249)
Q Consensus 130 ~~~ilG~ia~i~ti~~~~sPl~~ 152 (249)
....+|..+.+....+++..+.+
T Consensus 96 lHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 96 LHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888877776666544
No 39
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=35.31 E-value=75 Score=18.08 Aligned_cols=16 Identities=38% Similarity=0.308 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHhcC
Q 042197 21 YATPILTFSRVIKKKS 36 (249)
Q Consensus 21 ~~splp~~~~i~k~ks 36 (249)
....+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 4567999999999874
No 40
>PRK11387 S-methylmethionine transporter; Provisional
Probab=34.91 E-value=83 Score=30.01 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=15.0
Q ss_pred chhhHHHHHHhhheeeeecCCCcCCCC
Q 042197 197 FVGGPLGILQLVLYWKYRKSGIIKEPN 223 (249)
Q Consensus 197 ~~G~~l~~~ql~l~~~y~~~~~~~~~~ 223 (249)
..|..+-..-+..|..+++++++.++|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T PRK11387 439 WCGIPFVALCYGAYYLTQRLKRNMTQE 465 (471)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHh
Confidence 345444455556666666666655443
No 41
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=34.43 E-value=3.2e+02 Score=23.92 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcc
Q 042197 14 NAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYAL 60 (249)
Q Consensus 14 ~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~ 60 (249)
+++++..+..++-..++.+|++.-......-...+.++...+...+-
T Consensus 30 tlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaT 76 (262)
T PF05875_consen 30 TLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHAT 76 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhC
Confidence 45556666678888888888666444433333445666667777765
No 42
>PRK11387 S-methylmethionine transporter; Provisional
Probab=32.91 E-value=2.4e+02 Score=26.84 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHh
Q 042197 12 MGNAASLLLYATPILTFSRVIKK 34 (249)
Q Consensus 12 l~~i~s~~~~~splp~~~~i~k~ 34 (249)
+++...+..+..+.....+.+|+
T Consensus 370 l~~~~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 370 ISGFAVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455554444444443
No 43
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=32.48 E-value=4.1e+02 Score=24.63 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=24.9
Q ss_pred hhhhccCCccccchhHHHHHHHhHHHHH-hhhhccCCeeeeeccchhhHHHHHHhhheeeee
Q 042197 154 KQVIRTKSVEFMPFHLSFFSFLTSAIWM-VYGLLSHDLFIASPSFVGGPLGILQLVLYWKYR 214 (249)
Q Consensus 154 ~~viktks~~~i~~~~~~~~~~n~~~W~-~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~ 214 (249)
.-++|.-++-.++..+ +.+-.|. +.+....+...-..-.+|+++-.+-+.+|..-+
T Consensus 251 p~~l~~ssAt~~nLsL-----LTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSL-----LTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHhCccceeehHH-----HHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 3356666665666533 3333442 334333333222223455554444455554443
No 44
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=32.23 E-value=3.5e+02 Score=26.05 Aligned_cols=71 Identities=10% Similarity=0.000 Sum_probs=39.8
Q ss_pred eccccchhhhhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhccCCeeeeeccc
Q 042197 124 FHDHHHRKLFVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLSHDLFIASPSF 197 (249)
Q Consensus 124 ~~~~~~~~~ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~ 197 (249)
..+++....+-++.=..... .|+.|+--. --+++-|+......| +.+......|..|++-.-+...++|..
T Consensus 383 l~Pp~~iiwlnlfAfggle~-~Fl~plvlg-LYw~kaNa~ga~aSM-i~g~~~y~~l~~~~~ki~~fhpivP~l 453 (473)
T COG4145 383 LNPPEMIIWLNLFAFGGLEA-VFLWPLVLG-LYWEKANAAGALASM-IVGLVLYVLLAFLGIKILGFHPIVPSL 453 (473)
T ss_pred hCCcceeeeeehhhhcchhh-HHHHHHHHH-HHhccccHHHHHHHH-HHHHHHHHHHHHHhhHhheeccccHHH
Confidence 33566555544443333333 344555422 234444544443333 556677789999999888777776654
No 45
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.03 E-value=20 Score=28.34 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=55.2
Q ss_pred hhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhcc--CCeeeeeccchhhHHHHHHhhheeeeecCCCcCCCC
Q 042197 146 YSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLS--HDLFIASPSFVGGPLGILQLVLYWKYRKSGIIKEPN 223 (249)
Q Consensus 146 ~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~ 223 (249)
++-|+..+.+. +|+-+-++-.|..+.++-+.+.+-|++.. +|+.++.-.........+|..=|..|.-.+...|++
T Consensus 36 wGlpiAal~Dm--kK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~~Y~~~~~e~~ 113 (132)
T KOG1590|consen 36 WGLPIAALVDM--KKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNYNYGSTGEEKK 113 (132)
T ss_pred ccchHHHHHhc--cCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHHHhcccchhhc
Confidence 44455555553 56778889999999999999999999986 577777777888888888887776665444444343
No 46
>PRK10746 putative transport protein YifK; Provisional
Probab=31.17 E-value=1.9e+02 Score=27.60 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=17.2
Q ss_pred ccchhhhhhhHHHHHHHHHhhchhhhhhhh
Q 042197 127 HHHRKLFVGSIGLGASITMYSSPLVAVKQV 156 (249)
Q Consensus 127 ~~~~~~ilG~ia~i~ti~~~~sPl~~i~~v 156 (249)
.++.-..+-.+++....+.|..+.....+-
T Consensus 356 ~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~ 385 (461)
T PRK10746 356 PQRVFVYVYSASVLPGMVPWFVILISQLRF 385 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666667777665544443
No 47
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=30.85 E-value=2.9e+02 Score=25.64 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=28.9
Q ss_pred HHHHHhHHHHHhhhhccCCeeeeeccchhhHHHHHHhhheeeeecCC
Q 042197 171 FFSFLTSAIWMVYGLLSHDLFIASPSFVGGPLGILQLVLYWKYRKSG 217 (249)
Q Consensus 171 ~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~ 217 (249)
.+.+.-++.|--+....+-..++..|..|+.++..-.+.+.-|++++
T Consensus 247 a~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 247 AVATGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 33333344444445555666778889999998876665555555443
No 48
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=29.70 E-value=3.7e+02 Score=23.17 Aligned_cols=6 Identities=0% Similarity=-0.103 Sum_probs=2.3
Q ss_pred hhhhcc
Q 042197 154 KQVIRT 159 (249)
Q Consensus 154 ~~vikt 159 (249)
.+..++
T Consensus 111 ~~~~~~ 116 (352)
T PF07690_consen 111 ADWFPP 116 (352)
T ss_dssp HHCCCT
T ss_pred cccchh
Confidence 333333
No 49
>PF15102 TMEM154: TMEM154 protein family
Probab=27.41 E-value=85 Score=25.71 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=16.9
Q ss_pred eeeeccchhhHHHHHHhhheeeeecCCCcC
Q 042197 191 FIASPSFVGGPLGILQLVLYWKYRKSGIIK 220 (249)
Q Consensus 191 ~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 220 (249)
.+++|-+++.++-++-+.+.++|+|++.+.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 345676666555555566666665555444
No 50
>PRK15049 L-asparagine permease; Provisional
Probab=26.97 E-value=2.7e+02 Score=26.90 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=14.9
Q ss_pred cchhhhhhhHHHHHHHHHhhchhhhhh
Q 042197 128 HHRKLFVGSIGLGASITMYSSPLVAVK 154 (249)
Q Consensus 128 ~~~~~ilG~ia~i~ti~~~~sPl~~i~ 154 (249)
++.-+.+-.+++......|+.+.....
T Consensus 375 ~~~f~~l~~~~~~~~li~y~~~~~~~l 401 (499)
T PRK15049 375 SRVFEIVLNFASLGIIASWAFIIVCQM 401 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666655443
No 51
>PRK10580 proY putative proline-specific permease; Provisional
Probab=26.37 E-value=4.8e+02 Score=24.64 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh
Q 042197 10 GVMGNAASLLLYATPILTFSRVIKK 34 (249)
Q Consensus 10 g~l~~i~s~~~~~splp~~~~i~k~ 34 (249)
.-+++...+..+..+.....+.+|+
T Consensus 361 ~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 361 ASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555565555555554
No 52
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.07 E-value=5.9e+02 Score=24.58 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHhhchhhhhhhhhccCCccccchhHHHHHHHhHHHHHhhhhcc-CCeee
Q 042197 133 FVGSIGLGASITMYSSPLVAVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLLS-HDLFI 192 (249)
Q Consensus 133 ilG~ia~i~ti~~~~sPl~~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l~-~d~~i 192 (249)
.+...|++.-+..|. ..+.|.|. ....++..+..+-=.+|+++. .|.-+
T Consensus 356 liAa~a~i~Li~~Y~------~~vl~~~k-----~~~~~~~~L~~LY~~Ly~lLq~EdyAL 405 (430)
T PF06123_consen 356 LIAALACIGLISLYL------SSVLKSWK-----RGLIFAGLLAALYGFLYVLLQSEDYAL 405 (430)
T ss_pred HHHHHHHHHHHHHHH------HHHHhcch-----HHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344445555555553 34455443 334455666666666777775 56555
No 53
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.71 E-value=4.3e+02 Score=22.34 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=31.4
Q ss_pred HHHHHhHHHHHhhhh---cc-CCeeeeeccchhhHHHHHHhhheeeeecCCCcC
Q 042197 171 FFSFLTSAIWMVYGL---LS-HDLFIASPSFVGGPLGILQLVLYWKYRKSGIIK 220 (249)
Q Consensus 171 ~~~~~n~~~W~~YG~---l~-~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 220 (249)
+.+.+....|+.--. ++ ....+.+|+...++++.+.+.+++...++-+-+
T Consensus 151 ~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 151 LISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444556642222 12 334557889999999999998887776665543
No 54
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.99 E-value=2.8e+02 Score=25.56 Aligned_cols=23 Identities=4% Similarity=0.003 Sum_probs=16.0
Q ss_pred eccccchhhhhhhHHHHHHHHHh
Q 042197 124 FHDHHHRKLFVGSIGLGASITMY 146 (249)
Q Consensus 124 ~~~~~~~~~ilG~ia~i~ti~~~ 146 (249)
..+++...+.+|.++.+++.+..
T Consensus 148 ~~~~~~~~d~LGrl~~ii~~~~l 170 (340)
T PF12794_consen 148 NLPDGLARDVLGRLAFIILLLLL 170 (340)
T ss_pred cCchhhhhhhHHHHHHHHHHHHH
Confidence 34566777888888877776653
No 55
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.82 E-value=3.4e+02 Score=20.50 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=37.7
Q ss_pred CccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHhccchh
Q 042197 39 GFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLFASARD 98 (249)
Q Consensus 39 ~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y~~~~~ 98 (249)
+-+.+|.+...++.++=..+.+ +.+ +..+..-=..|.+.+..-..+|=.+++|.+
T Consensus 32 ~~K~iPlIs~viGilLG~~~~~--~~~---~~~l~~~~~aG~laGlAaTGL~e~~t~r~~ 86 (93)
T PF06946_consen 32 PNKWIPLISVVIGILLGAAAYP--LTG---DGNLALMAWAGGLAGLAATGLFEQFTNRSK 86 (93)
T ss_pred CcchhhHHHHHHHHHHHHHhhh--cCC---CccHHHHHHHHHHhhhhhhhHHHHHHhhhh
Confidence 4589999999999988888886 665 333333234577777777777766665443
No 56
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.01 E-value=1.3e+02 Score=23.85 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHHHHHHHHh
Q 042197 24 PILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSFILIYFLF 93 (249)
Q Consensus 24 plp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y~~~y~~y 93 (249)
|+..+.+.. |+-+-+|.-+-.++++-+.+.+.|.+ ++.+ +|+.++.+.+.....+.++..=|..|
T Consensus 39 piAal~Dmk--K~P~~ISG~MT~AL~~YS~vFMRfA~-~VqP--RN~LLfaCHa~N~taQ~~Qg~Rf~~~ 103 (132)
T KOG1590|consen 39 PIAALVDMK--KSPEMISGRMTSALCLYSAVFMRFAW-MVQP--RNYLLFACHATNETAQLAQGSRFLNY 103 (132)
T ss_pred hHHHHHhcc--CChhhccccchHHHHHHHHHHHHHHH-hcCc--chhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 666666654 45444555555667777888889998 5666 67888888888888888887555433
No 57
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.54 E-value=1.9e+02 Score=25.77 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=37.1
Q ss_pred hhhhhhHHHHHHHHHhhchhhhhhhhhccC------Cccccchh--HHHHHHH-hHHHHHhhhhccCCeeeeecc
Q 042197 131 KLFVGSIGLGASITMYSSPLVAVKQVIRTK------SVEFMPFH--LSFFSFL-TSAIWMVYGLLSHDLFIASPS 196 (249)
Q Consensus 131 ~~ilG~ia~i~ti~~~~sPl~~i~~viktk------s~~~i~~~--~~~~~~~-n~~~W~~YG~l~~d~~i~~~N 196 (249)
+.++|.+.++++-++|++-+--+.-+..+. +.+++++. -+...++ +++.+.+|....+|-+-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 467899999999999887665555444433 33444322 2222222 334455666666555444443
No 58
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=21.08 E-value=4.6e+02 Score=21.30 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=19.7
Q ss_pred HHhhHHHHHHHHHhcCCCCccchhHHH
Q 042197 21 YATPILTFSRVIKKKSTEGFSCFPYII 47 (249)
Q Consensus 21 ~~splp~~~~i~k~ks~g~~s~~p~~~ 47 (249)
+.+|..+..+++|++.......+..+.
T Consensus 2 l~~P~~~w~~i~~~~~~~~~~~~~~~l 28 (170)
T PF06930_consen 2 LTSPSDEWERIKREHESSWALYLVHVL 28 (170)
T ss_pred cCChHHHHHHHHHcCCchhHHHHHHHH
Confidence 468999999999998877655443333
No 59
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.00 E-value=1.4e+02 Score=26.70 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHhH---HHHHhhhhcc---CCeeeeeccchhhHHHHHHhhheeeeecCC
Q 042197 164 FMPFHLSFFSFLTS---AIWMVYGLLS---HDLFIASPSFVGGPLGILQLVLYWKYRKSG 217 (249)
Q Consensus 164 ~i~~~~~~~~~~n~---~~W~~YG~l~---~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~ 217 (249)
++...+.+-+..|+ -.|..||+.- ++..--.-|.+|+.+.++-..+|..-.++.
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34444444444444 3454577763 333334559999999999888885544333
No 60
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.85 E-value=82 Score=24.97 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHhccc
Q 042197 77 GLGIFLELSFILIYFLFASA 96 (249)
Q Consensus 77 ~~g~~~~~~y~~~y~~y~~~ 96 (249)
++|++++++-+.++..|.-+
T Consensus 70 i~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444444333
No 61
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=20.20 E-value=3.4e+02 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=11.3
Q ss_pred CeeeeeccchhhHHHHHHhhhe
Q 042197 189 DLFIASPSFVGGPLGILQLVLY 210 (249)
Q Consensus 189 d~~i~~~N~~G~~l~~~ql~l~ 210 (249)
++..+++ +|.+...+|..+|
T Consensus 412 ~~~~~~~--iGi~~~~iYy~vF 431 (548)
T TIGR02003 412 DLINFVI--VSILFAGIMFFIA 431 (548)
T ss_pred CchhHHH--HHHHHHHHHHHHH
Confidence 4444443 5777666665554
Done!