Query 042197
Match_columns 249
No_of_seqs 151 out of 1569
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 32.8 97 0.0033 27.2 6.9 22 199-220 413-434 (445)
2 3qrx_B Melittin; calcium-bindi 12.5 1.2E+02 0.0041 16.4 1.7 15 22-36 10-24 (26)
3 3dh4_A Sodium/glucose cotransp 11.9 6.5E+02 0.022 23.0 7.9 21 189-209 447-467 (530)
4 4djk_A Probable glutamate/gamm 11.5 2.5E+02 0.0086 25.0 4.8 21 132-152 368-388 (511)
5 4gc0_A D-xylose-proton symport 8.7 9E+02 0.031 20.6 7.5 18 211-228 460-477 (491)
6 2gfp_A EMRD, multidrug resista 8.4 4.8E+02 0.016 21.5 5.2 24 127-150 119-142 (375)
7 4aps_A DI-OR tripeptide H+ sym 8.0 9.7E+02 0.033 20.4 8.9 10 50-59 291-300 (491)
8 1peh_A Pepnh1; transferase, nu 7.8 2.6E+02 0.0089 16.2 2.1 21 216-236 3-23 (35)
9 3gia_A Uncharacterized protein 7.6 6.8E+02 0.023 21.6 6.0 88 7-99 341-428 (444)
10 3o7q_A L-fucose-proton symport 7.3 9.8E+02 0.034 19.9 7.1 161 75-237 66-254 (438)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=32.82 E-value=97 Score=27.24 Aligned_cols=22 Identities=5% Similarity=-0.250 Sum_probs=10.8
Q ss_pred hhHHHHHHhhheeeeecCCCcC
Q 042197 199 GGPLGILQLVLYWKYRKSGIIK 220 (249)
Q Consensus 199 G~~l~~~ql~l~~~y~~~~~~~ 220 (249)
|...-..-+.+|+.++++++++
T Consensus 413 ~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 413 SFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHhhhcccC
Confidence 4443444455565555555444
No 2
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=12.48 E-value=1.2e+02 Score=16.38 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.1
Q ss_pred HhhHHHHHHHHHhcC
Q 042197 22 ATPILTFSRVIKKKS 36 (249)
Q Consensus 22 ~splp~~~~i~k~ks 36 (249)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 447899999999875
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=11.86 E-value=6.5e+02 Score=23.01 Aligned_cols=21 Identities=0% Similarity=0.009 Sum_probs=11.1
Q ss_pred CeeeeeccchhhHHHHHHhhh
Q 042197 189 DLFIASPSFVGGPLGILQLVL 209 (249)
Q Consensus 189 d~~i~~~N~~G~~l~~~ql~l 209 (249)
+....-++.+|+.++.+-..+
T Consensus 447 ~~~~~~~~~~~~~~~~i~~v~ 467 (530)
T 3dh4_A 447 SMPFMDQMLYTLLFTMVVIAF 467 (530)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 433344566676666654433
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=11.55 E-value=2.5e+02 Score=25.04 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHhhchhhh
Q 042197 132 LFVGSIGLGASITMYSSPLVA 152 (249)
Q Consensus 132 ~ilG~ia~i~ti~~~~sPl~~ 152 (249)
+.+..+++......|..+...
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=8.72 E-value=9e+02 Score=20.62 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.8
Q ss_pred eeeecCCCcCCCCccccc
Q 042197 211 WKYRKSGIIKEPNKWDLE 228 (249)
Q Consensus 211 ~~y~~~~~~~~~~~~~~~ 228 (249)
+.+-||.|.+.-|+.|+.
T Consensus 460 ~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHCCCCTTCCHHHHGGG
T ss_pred HheecCCCCCCHHHHHHH
Confidence 334455555544555444
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=8.35 E-value=4.8e+02 Score=21.53 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=12.3
Q ss_pred ccchhhhhhhHHHHHHHHHhhchh
Q 042197 127 HHHRKLFVGSIGLGASITMYSSPL 150 (249)
Q Consensus 127 ~~~~~~ilG~ia~i~ti~~~~sPl 150 (249)
++++....|......++....+|.
T Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 119 RTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp TSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344455555555555555544443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=8.02 E-value=9.7e+02 Score=20.45 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=4.7
Q ss_pred HHHHHHHHhc
Q 042197 50 LNCLLYTWYA 59 (249)
Q Consensus 50 ~n~~lW~~YG 59 (249)
.....|..|+
T Consensus 291 ~~~~~~~~~~ 300 (491)
T 4aps_A 291 AAVLFWAIEE 300 (491)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHh
Confidence 3444455544
No 8
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=7.80 E-value=2.6e+02 Score=16.21 Aligned_cols=21 Identities=10% Similarity=-0.038 Sum_probs=15.0
Q ss_pred CCCcCCCCccccccccccccc
Q 042197 216 SGIIKEPNKWDLEKNGENSKK 236 (249)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ 236 (249)
+|+..-++-+|.++.++-.|+
T Consensus 3 EKky~lQ~~VDk~K~kvk~VE 23 (35)
T 1peh_A 3 EKKYHLQERVDKVKKKVKDVE 23 (35)
T ss_dssp CTTTCCSSSTTGGGGGTTGGG
T ss_pred hHHHHHHHHHHHHHHHHHhHH
Confidence 556666888888888766554
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=7.57 E-value=6.8e+02 Score=21.55 Aligned_cols=88 Identities=14% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhccccccccCCceEeeehhhHHHHHHHHH
Q 042197 7 LAFGVMGNAASLLLYATPILTFSRVIKKKSTEGFSCFPYIIALLNCLLYTWYALPVVSYRWENFTVVTINGLGIFLELSF 86 (249)
Q Consensus 7 ~~~g~l~~i~s~~~~~splp~~~~i~k~ks~g~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~~~i~~~N~~g~~~~~~y 86 (249)
+.+.-++++..+..+..+.-...+.+|++ ++....|.+........-....+....+ +......-....+....+
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 415 (444)
T 3gia_A 341 EGVASITSAVFMVIYLFVILSHYILIDEV--GGRKEIVIFSFIVVLGVFLLLLYYQWIT---NRFVFYGIIATFIGVLIF 415 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccchhH
Q 042197 87 ILIYFLFASARDK 99 (249)
Q Consensus 87 ~~~y~~y~~~~~~ 99 (249)
...|.++.+++.+
T Consensus 416 ~~~~~~~~~~~~~ 428 (444)
T 3gia_A 416 EIIYRKVTKRTFS 428 (444)
T ss_dssp HHHHHHHHCCCCC
T ss_pred HHHHHHhccCCCc
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=7.27 E-value=9.8e+02 Score=19.86 Aligned_cols=161 Identities=9% Similarity=-0.130 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhheeccccchhhhhhhHHHHHHHHHhhchhhhhh
Q 042197 75 INGLGIFLELSFILIYFLFASARDKIKVAAIVIPVILLFCITALVSAFVFHDHHHRKLFVGSIGLGASITMYSSPLVAVK 154 (249)
Q Consensus 75 ~N~~g~~~~~~y~~~y~~y~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ilG~ia~i~ti~~~~sPl~~i~ 154 (249)
......+...+.....-+..++-.+++.+........+.... .......++-....+...+..+..-..+.+...-+.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 143 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL--FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT 143 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH--HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHH
Q ss_pred hhhccCCccc-cchhHHHHHHHhHHHHHhhhhcc-CCe--------------------------eeeeccchhhHHHHHH
Q 042197 155 QVIRTKSVEF-MPFHLSFFSFLTSAIWMVYGLLS-HDL--------------------------FIASPSFVGGPLGILQ 206 (249)
Q Consensus 155 ~viktks~~~-i~~~~~~~~~~n~~~W~~YG~l~-~d~--------------------------~i~~~N~~G~~l~~~q 206 (249)
+...+|.... +............+.-.+-+.+. +.. .-..-=..+......-
T Consensus 144 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 223 (438)
T 3o7q_A 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223 (438)
T ss_dssp HSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred hhheeeeecCCCcCCCCcccccccccccccc
Q 042197 207 LVLYWKYRKSGIIKEPNKWDLEKNGENSKKL 237 (249)
Q Consensus 207 l~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 237 (249)
+..++...++++++++++..+.+.+..-.++
T Consensus 224 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T 3o7q_A 224 LLIMLTKFPALQSDNHSDAKQGSFSASLSRL 254 (438)
T ss_dssp HHHHHCCCCCCTTTCCCCSSTTSHHHHHHHH
T ss_pred HHHHHHcCCcccccccccccccchhhhHHHH
Done!