Query 042197
Match_columns 249
No_of_seqs 151 out of 1569
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 06:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042197.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042197hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5c1 f.32.1.1 (C:262-385) M 9.4 1.9E+02 0.014 19.8 4.5 30 119-148 75-104 (124)
2 d1vf5c3 f.23.23.1 (C:250-286) 8.2 1.8E+02 0.013 15.8 3.1 17 150-166 18-34 (37)
3 d1ppjc1 f.32.1.1 (C:261-379) M 7.3 2.6E+02 0.019 18.9 4.4 29 119-147 75-103 (119)
4 d1xioa_ f.13.1.1 (A:) Sensory 7.2 4.2E+02 0.031 19.3 9.4 34 152-186 149-182 (226)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 2.2E+02 0.016 15.3 1.6 12 75-86 3-14 (36)
6 d1rh5b_ f.23.28.1 (B:) Preprot 3.4 4E+02 0.029 15.6 2.7 20 8-29 36-55 (56)
7 d1jfia_ a.22.1.3 (A:) Negative 3.4 4.7E+02 0.034 15.1 3.6 20 149-168 4-24 (66)
8 d1su0b_ d.224.1.2 (B:) IscU ho 3.3 2.5E+02 0.018 19.0 2.0 32 213-244 15-48 (136)
9 d1xjsa_ d.224.1.2 (A:) NifU {B 3.3 2E+02 0.015 19.9 1.4 31 214-244 22-54 (147)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 3.2 3.1E+02 0.023 13.7 1.7 20 77-96 9-28 (30)
No 1
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.39 E-value=1.9e+02 Score=19.75 Aligned_cols=30 Identities=7% Similarity=0.002 Sum_probs=22.3
Q ss_pred hhhheeccccchhhhhhhHHHHHHHHHhhc
Q 042197 119 VSAFVFHDHHHRKLFVGSIGLGASITMYSS 148 (249)
Q Consensus 119 ~~~~~~~~~~~~~~ilG~ia~i~ti~~~~s 148 (249)
.+++|.+..|.--..+|.++++.=.+.|.-
T Consensus 75 LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli 104 (124)
T d3cx5c1 75 LGQIGACHVEVPYVLMGQIATFIYFAYFLI 104 (124)
T ss_dssp HHHHHTSCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 456666667777788999998888777643
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.20 E-value=1.8e+02 Score=15.84 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=11.1
Q ss_pred hhhhhhhhccCCccccc
Q 042197 150 LVAVKQVIRTKSVEFMP 166 (249)
Q Consensus 150 l~~i~~viktks~~~i~ 166 (249)
+.++.-|+|+|..|-++
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777766654
No 3
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.35 E-value=2.6e+02 Score=18.93 Aligned_cols=29 Identities=7% Similarity=-0.008 Sum_probs=21.1
Q ss_pred hhhheeccccchhhhhhhHHHHHHHHHhh
Q 042197 119 VSAFVFHDHHHRKLFVGSIGLGASITMYS 147 (249)
Q Consensus 119 ~~~~~~~~~~~~~~ilG~ia~i~ti~~~~ 147 (249)
.+++|.+..|.--..+|.++++.=.+.+.
T Consensus 75 L~wlG~~p~e~p~~~~gqi~tv~YF~~fl 103 (119)
T d1ppjc1 75 LTWIGGQPVEHPYITIGQLASVLYFLLIL 103 (119)
T ss_dssp HHHHHTSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 45666666777778889999888876653
No 4
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=7.17 E-value=4.2e+02 Score=19.34 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=18.2
Q ss_pred hhhhhhccCCccccchhHHHHHHHhHHHHHhhhhc
Q 042197 152 AVKQVIRTKSVEFMPFHLSFFSFLTSAIWMVYGLL 186 (249)
Q Consensus 152 ~i~~viktks~~~i~~~~~~~~~~n~~~W~~YG~l 186 (249)
..++..++++. +..........+...+|..|.+.
T Consensus 149 ~~~~~~~~~~~-~~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 149 PLRAKTRTQSS-ELANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHTTSCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 22333334445556799999875
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.94 E-value=2.2e+02 Score=15.29 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHH
Q 042197 75 INGLGIFLELSF 86 (249)
Q Consensus 75 ~N~~g~~~~~~y 86 (249)
+|..|++..+.+
T Consensus 3 vN~Lg~iAt~LF 14 (36)
T d2axtm1 3 VNQLGLIATALF 14 (36)
T ss_dssp CCTTHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 355555544433
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.43 E-value=4e+02 Score=15.62 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 042197 8 AFGVMGNAASLLLYATPILTFS 29 (249)
Q Consensus 8 ~~g~l~~i~s~~~~~splp~~~ 29 (249)
+.|++|.+..+.+ .|++.+.
T Consensus 36 i~G~IGf~I~li~--~~i~~ii 55 (56)
T d1rh5b_ 36 LLGIIGYIIHVPA--TYIKGIL 55 (56)
T ss_dssp HHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhhhhc
Confidence 4666666666544 3666543
No 7
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.35 E-value=4.7e+02 Score=15.08 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=13.0
Q ss_pred hhhhhhhhhc-cCCccccchh
Q 042197 149 PLVAVKQVIR-TKSVEFMPFH 168 (249)
Q Consensus 149 Pl~~i~~vik-tks~~~i~~~ 168 (249)
|+.-+++++| ..+...++-.
T Consensus 4 P~srVkkimk~~~~~~~is~~ 24 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVAAA 24 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBCTT
T ss_pred ChHHHHHHHhcCCccccccHH
Confidence 7888899998 4444444433
No 8
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.34 E-value=2.5e+02 Score=19.00 Aligned_cols=32 Identities=9% Similarity=-0.067 Sum_probs=18.3
Q ss_pred eecCCCcCCCCccccccccc--ccccceeEEecc
Q 042197 213 YRKSGIIKEPNKWDLEKNGE--NSKKLQLAINND 244 (249)
Q Consensus 213 y~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 244 (249)
.|++....+.....+.+|+. |.+++++.+|.|
T Consensus 15 nP~n~g~l~~~~~~~~~Np~CGD~i~i~l~i~~~ 48 (136)
T d1su0b_ 15 RPHHHGQLDGVEAVQLNNPTCGDVISLTVKFDED 48 (136)
T ss_dssp SCSSBSCCTTCCCEEEECSSSCCEEEEEEEESSS
T ss_pred CCCCCCCCCCCCeeeecCCCCCCEEEEEEEEcCC
Confidence 44444444443334445543 778888888865
No 9
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=3.32 E-value=2e+02 Score=19.90 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred ecCCCcCCCCccccccccc--ccccceeEEecc
Q 042197 214 RKSGIIKEPNKWDLEKNGE--NSKKLQLAINND 244 (249)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 244 (249)
|+++...++....+..|+. |.++++..++.|
T Consensus 22 P~n~g~l~~~~~~~~~Np~CGD~i~i~l~i~~~ 54 (147)
T d1xjsa_ 22 PRNKGVLNDSIVVDMNNPTCGDRIRLTMKLDGD 54 (147)
T ss_dssp CCCCCCCCSSEEEEEEETTTTEEEEEEEECCSS
T ss_pred CCCCCCCCCCCEeecCCCCCCcEEEEEEEEcCC
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.16 E-value=3.1e+02 Score=13.66 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhccc
Q 042197 77 GLGIFLELSFILIYFLFASA 96 (249)
Q Consensus 77 ~~g~~~~~~y~~~y~~y~~~ 96 (249)
+++.++++++..+|+|-.++
T Consensus 9 ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCC
Done!