BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042198
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 201/424 (47%), Gaps = 54/424 (12%)
Query: 4 LDQFRNNVYAPRVLYYPLNQD-DLSSAIDIDHIVXXXXXXXXXXXXETLVRFYPLAGKLT 62
LDQ + P +L+YP D +L A H+ + L FYPLAG++
Sbjct: 31 LDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL--------KQSLSKVLTHFYPLAGRIN 82
Query: 63 NNFSVDCNDEGVYFVEAVAKSLLNEL------LIQPDPSLRNKLFPVDGSQQRGQVAGAH 116
N SVDCND GV FVEA ++ L++ L + D L + +P + V A
Sbjct: 83 VNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLA- 141
Query: 117 VAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATARNKTSEEQAIYTCPNYDAS 176
V+++ F CGG I +SH D S ++F+ AW AT R +T PN+D +
Sbjct: 142 ---VKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETE-----IVLPNFDLA 193
Query: 177 SLFLPNEDDLFHQLRAISNVSYTRFFETGRFVTRRFVFDAEAIAELKDKAKS-SRVQNPT 235
+ P + N V +RFVFD E I L+ +A S S +N +
Sbjct: 194 ARHFP----------PVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFS 243
Query: 236 RIEALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLRTKARPPLSEYLIGNIVWQTNALCT 295
R++ + A + + ++ V K + ++ AVNLR++ PPL Y +GNI A
Sbjct: 244 RVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVD 303
Query: 296 EE-EVDLDGLVWLLREAISKFDGDFVKN-LQGVGGLLELSEAIKHEAEAYSDAKNRIMFS 353
E + D L+ LR ++ K + D L+G+ L EL + + + F+
Sbjct: 304 AEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYEL------------EPQELLSFT 351
Query: 354 SWCTFGSYGIDFGWGKPIWVSCVGLDGSILEFSPVVILMDTRFGDGIEAWVSLLEEDMAL 413
SWC G Y +DFGWGKP+ +C + +LMDTR GDG+EAW+ + E++MA+
Sbjct: 352 SWCRLGFYDLDFGWGKPL-SACT----TTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAM 406
Query: 414 LEVD 417
L V+
Sbjct: 407 LPVE 410
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 163/389 (41%), Gaps = 44/389 (11%)
Query: 49 ETLVRFYPLAGKLTNN----FSVDCNDEGVYFVEAVAKSLLNELL-IQPDPSLRNKLFPV 103
LV FYP+AG+L + ++CN EGV FVEA + ++++ P LR + V
Sbjct: 67 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAV 126
Query: 104 DGSQQRGQVAGAHVAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATAR----- 158
D SQ ++ + +QVT F CGG+ + + H DG S F+ +W+ AR
Sbjct: 127 DYSQG---ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT 183
Query: 159 -----NKTSEEQAIYTCPNYDASSLFLPNEDDLFHQLRAISNVSYTRFFETGRFVTRRFV 213
++T P + P + Q A +V T F
Sbjct: 184 LPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPET--------AVSIFK 235
Query: 214 FDAEAIAELKDKAKS-SRVQNPTRIEALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLRT 272
E I+ LK K+K + + E L+ + R A + + T L A + R
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVWRC--ACKARGLEVDQGTKLYIATDGRA 293
Query: 273 KARPPLSEYLIGNIVWQTNALCTEEEVDLDGLVWL----LREAISKFDGDFVKNLQGVGG 328
+ RP L GN+++ + +++ VW + +A+++ D D++++
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSAL---D 349
Query: 329 LLELSEAIKHEAE-AYSDAKNRIMFSSWCTFGSYGIDFGWGKPIWVSCVGLDGSILEFSP 387
LEL +K A++ + +SW + DFGWG+PI++ G+ L F
Sbjct: 350 YLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF-- 407
Query: 388 VVILMDTRFGDG-IEAWVSLLEEDMALLE 415
++ + DG + +SL E M L +
Sbjct: 408 ---ILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 163/387 (42%), Gaps = 40/387 (10%)
Query: 49 ETLVRFYPLAGKLTNN----FSVDCNDEGVYFVEAVAKSLLNELL-IQPDPSLRNKLFPV 103
LV FYP+AG+L + ++CN EGV FVEA + ++++ P LR + V
Sbjct: 64 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAV 123
Query: 104 DGSQQRGQVAGAHVAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATARNKTSE 163
D SQ ++ + +QVT F CGG+ + + H DG S F+ +W+ AR
Sbjct: 124 DYSQG---ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLD-- 178
Query: 164 EQAIYTCPNYDASSLFL------PNEDDLFHQLRAISNVS--YTRFFETGRFVTRRFVFD 215
T P + +L P + +Q VS + F
Sbjct: 179 ----VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLT 234
Query: 216 AEAIAELKDKAKS-SRVQNPTRIEALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLRTKA 274
E I+ LK K+K + + E L+ + R A + + T L A + R +
Sbjct: 235 REQISALKAKSKEDGNTISYSSYEMLAGHVWRC--ACKARGLEVDQGTKLYIATDGRARL 292
Query: 275 RPPLSEYLIGNIVWQTNALCTEEEVDLDGLVWL----LREAISKFDGDFVKNLQGVGGLL 330
RP L GN+++ + +++ VW + +A+++ D D++++ L
Sbjct: 293 RPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSAL---DYL 348
Query: 331 ELSEAIKHEAE-AYSDAKNRIMFSSWCTFGSYGIDFGWGKPIWVSCVGLDGSILEFSPVV 389
EL +K A++ + +SW + DFGWG+PI++ G+ L F
Sbjct: 349 ELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF---- 404
Query: 390 ILMDTRFGDG-IEAWVSLLEEDMALLE 415
++ + DG + +SL E M L +
Sbjct: 405 -ILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 162/389 (41%), Gaps = 44/389 (11%)
Query: 49 ETLVRFYPLAGKLTNN----FSVDCNDEGVYFVEAVAKSLLNELL-IQPDPSLRNKLFPV 103
LV FYP+AG+L + ++CN EGV FVEA + ++++ P LR + V
Sbjct: 67 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAV 126
Query: 104 DGSQQRGQVAGAHVAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATAR----- 158
D SQ ++ + +QVT F GG+ + + H DG S F+ +W+ AR
Sbjct: 127 DYSQG---ISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT 183
Query: 159 -----NKTSEEQAIYTCPNYDASSLFLPNEDDLFHQLRAISNVSYTRFFETGRFVTRRFV 213
++T P + P + Q A +V T F
Sbjct: 184 LPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPET--------AVSIFK 235
Query: 214 FDAEAIAELKDKAKS-SRVQNPTRIEALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLRT 272
E I+ LK K+K + + E L+ + R A + + T L A + R
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVWRC--ACKARGLEVDQGTKLYIATDGRA 293
Query: 273 KARPPLSEYLIGNIVWQTNALCTEEEVDLDGLVWL----LREAISKFDGDFVKNLQGVGG 328
+ RP L GN+++ + +++ VW + +A+++ D D++++
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSAL---D 349
Query: 329 LLELSEAIKHEAE-AYSDAKNRIMFSSWCTFGSYGIDFGWGKPIWVSCVGLDGSILEFSP 387
LEL +K A++ + +SW + DFGWG+PI++ G+ L F
Sbjct: 350 YLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSF-- 407
Query: 388 VVILMDTRFGDG-IEAWVSLLEEDMALLE 415
++ + DG + +SL E M L +
Sbjct: 408 ---ILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 146/358 (40%), Gaps = 46/358 (12%)
Query: 50 TLVRFYPLAGKLTNNFSVDCNDEGVYFVE--AVAKSL------LNELLIQPDPSLRNKLF 101
TL FYP GKL + + +VE +VA + LNEL P +K +
Sbjct: 72 TLKHFYPFVGKLVV-YPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGN-HPRNCDKFY 129
Query: 102 ---PVDGSQQR-GQVAGAHVAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATA 157
P+ G R + VQVT F G+ I H GD ++ F+KAW + A
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 158 RNKTSEEQ--AIYTCPNYDASSLFLPNEDDLFHQLRAIS--NVSYTRFFETGRFVTRR-- 211
R+ ++E A T P YD + P D+ + + + N Y G R
Sbjct: 190 RSGNNDESFLANGTRPLYDRIIKY-PMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRAT 248
Query: 212 FVFDAEAIAELKDKAKSSRVQNPTRIEALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLR 271
F+ I +LKD+ + Q PT S ++ + + KS + + L ++ R
Sbjct: 249 FILTRAVINQLKDRVLA---QLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRR 305
Query: 272 TKARPPLSEYLIGNIVWQTNALC-TEEEVDLDGLVW---LLREAISKFDGDFVKNLQGVG 327
+ +PP+ GN V A+ T + +G + L+ E + K D+ +
Sbjct: 306 ARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGV---- 361
Query: 328 GLLELSEAIKHEAEAYSDAKNRIMFS--SWCT----FGSYGIDFGWGKPIWVSCVGLD 379
+K + E+++D + M + +W + Y +DFGWGKP + V +D
Sbjct: 362 --------LKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSID 411
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 144/358 (40%), Gaps = 46/358 (12%)
Query: 50 TLVRFYPLAGKLTNNFSVDCNDEGVYFVE--AVAKSL------LNELLIQPDPSLRNKLF 101
TL FYP GKL + + +VE +VA + LNEL P +K +
Sbjct: 72 TLKHFYPFVGKLVV-YPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGN-HPRNCDKFY 129
Query: 102 ---PVDGSQQR-GQVAGAHVAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATA 157
P+ G R + VQVT F G+ I H GD ++ F+KAW + A
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 158 RNKTSEEQ--AIYTCPNYDASSLFLPNEDDLFHQLRAIS--NVSYTRFFETGRFVTRR-- 211
R+ ++E A T P YD + P D+ + + + N Y G R
Sbjct: 190 RSGNNDESFLANGTRPLYDRIIKY-PXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRAT 248
Query: 212 FVFDAEAIAELKDKAKSSRVQNPTRIEALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLR 271
F+ I +LKD+ + Q PT S ++ + + KS + + L ++ R
Sbjct: 249 FILTRAVINQLKDRVLA---QLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRR 305
Query: 272 TKARPPLSEYLIGNIVWQTNALC-TEEEVDLDGLVW---LLREAISKFDGDFVKNLQGVG 327
+ +PP+ GN V A+ T + +G + L+ E + K D+ +
Sbjct: 306 ARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGV---- 361
Query: 328 GLLELSEAIKHEAEAYSD--AKNRIMFSSWCT----FGSYGIDFGWGKPIWVSCVGLD 379
+K + E+++D ++ +W + Y DFGWGKP + V +D
Sbjct: 362 --------LKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSID 411
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 106/286 (37%), Gaps = 39/286 (13%)
Query: 115 AHVAKVQVTSFACGGLVICACISHTFGDGTSFSSFMKAWAATARNKTSEE-QAIYTCPNY 173
A V +QVT F G+ I H GDG + F++AWA + E+ A P Y
Sbjct: 142 APVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFY 201
Query: 174 DASSLFLP--------NEDDLFHQLRAISNVSYTRFFETGRFVTRRFVFDAEAIAELKDK 225
D S + P NE + S+V G F+ R I +LK+
Sbjct: 202 DRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITR-----HDIGKLKNL 256
Query: 226 AKSSRVQNPTRIEALSAILSRSIMAVLNKKSSS------HRPTLLSHAVNLRTKARPPLS 279
+ R + T + + + + ++ ++++ + A + R + PPL
Sbjct: 257 VLTRRPKL-THVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLP 315
Query: 280 EYLIGNIVWQTNALCTEEEVDLDG------LVWLLREAISKFDGDFVKNLQGVGGLLELS 333
GN + + +VDL G V L+ EAI K D L G E
Sbjct: 316 PSYFGNAL--VGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSG-SWFKEYD 372
Query: 334 EAIKHEAEAYSDAKNRIMFSSWCTFGSYGIDFGWGKPIWVSCVGLD 379
+ DAK + + Y DFGWG+P + V +D
Sbjct: 373 KV---------DAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSID 409
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 29/228 (12%)
Query: 212 FVFDAEAIAELKDKAKSSRVQNPTRI----EALSAILSRSIMAVLNKKSSSHRPTLLSHA 267
F F +A++ELKD A + + T+ +ALSA + +S V ++ PT A
Sbjct: 234 FTFSPKAMSELKDAATKT-LDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRA 292
Query: 268 VNLRTKARPPLS-----EYLIGNIVWQTNALCTEEEVDLDGLVWLLREAISKFDGDFVKN 322
V+ ARP + L+ N+ + + + L LR + +
Sbjct: 293 VD----ARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDP--ASMRQR 346
Query: 323 LQGVGGLLELSEAIKHEA-EAYSDAKNRIMFSSWCTFGSYGIDFGWGKPIWVSCVGLDGS 381
+G+ L + + + A +D +M SSW G + DFG G +G +
Sbjct: 347 TRGLATYLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFGLG-------LGKPET 399
Query: 382 ILE--FSPVVILM--DTRFGDG-IEAWVSLLEEDMALLEVDKNLLEFA 424
+ F PV LM + DG A +SL +EDM L+ DK ++A
Sbjct: 400 VRRPIFEPVESLMYFMPKKPDGEFCAALSLRDEDMDRLKADKEWTKYA 447
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 124/319 (38%), Gaps = 32/319 (10%)
Query: 124 SFACGGLVICACISHTFGDGTSFSSFMKAWAATARNKTSEEQAIYTCPNYDASSLFLPNE 183
+F GGL++ H D T + ++ + RN++ E+ I + N D ++ E
Sbjct: 151 NFIKGGLILTVNGQHGAXDXTGQDAIIRLLSKACRNESFTEEEI-SAXNLDRKTVVPLLE 209
Query: 184 D-----DLFHQL---RAISNVSYTRFFETGRFVTRRFVFDAEAIAELKDKAKSSRVQNPT 235
+ +L HQ+ + T F F F +A++ELKD A + +
Sbjct: 210 NYKVGPELDHQIAKPAPAGDAPPAPAKATWAF----FSFTPKALSELKDAATKTLDASSK 265
Query: 236 RI---EALSAILSRSIMAVLNKKSSSHRPTLLSHAVNLRTKARPPLSEYLIGNIVWQTNA 292
+ +ALSA + +S V + + PT AV+ R +S G + T
Sbjct: 266 FVSTDDALSAFIWQSTSRVRLARLDASTPTEFCRAVDXRGPXG--VSSTYPGLLQNXTYH 323
Query: 293 LCTEEEVDLDGLVWLLREAISKFDGDFVKNLQGVGGLLELSEAIKHEAEAYSDAK--NRI 350
T E+ + L S+ + D ++ K +DA + I
Sbjct: 324 DSTVAEIANEPLGATASRLRSELNSDRLRRRTQALATYXHGLPDKSSVSLTADANPSSSI 383
Query: 351 MFSSWCTFGSYGIDFGW--GKPIWVSCVGLDG--SILEFSPVVILMDTRFGDG-IEAWVS 405
SSW G + DFG+ GKP V + S+ F P + DG A +S
Sbjct: 384 XLSSWAKVGCWEYDFGFGLGKPESVRRPRFEPFESLXYFXP-------KKPDGEFTASIS 436
Query: 406 LLEEDMALLEVDKNLLEFA 424
L +ED L+ D+ ++A
Sbjct: 437 LRDEDXERLKADEEWTKYA 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,342,660
Number of Sequences: 62578
Number of extensions: 490374
Number of successful extensions: 967
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 15
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)