Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>042199
MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT
AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK
IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE
AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042199
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010321 - symbol:AT1G12790 "AT1G12790" species...   779  2.1e-77   1


>TAIR|locus:2010321 [details] [associations]
            symbol:AT1G12790 "AT1G12790" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] EMBL:CP002684 InterPro:IPR010994
            SUPFAM:SSF47781 IPI:IPI00536946 RefSeq:NP_563913.1 UniGene:At.42060
            ProteinModelPortal:F4IDW9 SMR:F4IDW9 EnsemblPlants:AT1G12790.1
            GeneID:837835 KEGG:ath:AT1G12790 OMA:IVKIAHS Uniprot:F4IDW9
        Length = 250

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 148/220 (67%), Positives = 177/220 (80%)

Query:     1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
             +MS+ W+ EQ PS INFIS+FLSANSFRLNFV + PD IFNCGG+SI+FVF+T WD  N 
Sbjct:    31 IMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDFSNV 90

Query:    61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
             A +FSR+K+LK QFA  YVV  L T+EQ+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct:    91 ASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMGFEK 150

Query:   121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
             I+KIAHSRGVCK+Q   SKLK ER+R VQ  ++F+R VTSIP I+ HDAN L QAIGSIE
Sbjct:   151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIE 210

Query:   181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
             AIAKASK  IL NTDLS++KA+ + RFF+DP+ YLSPK N
Sbjct:   211 AIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.44    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.63u 0.11s 19.74t   Elapsed:  00:00:01
  Total cpu time:  19.63u 0.11s 19.74t   Elapsed:  00:00:01
  Start:  Thu May  9 20:30:47 2013   End:  Thu May  9 20:30:48 2013

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