BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042199
(220 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297740939|emb|CBI31251.3| unnamed protein product [Vitis vinifera]
Length = 220
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/220 (81%), Positives = 200/220 (90%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
MM + WRDEQHPSFINFISSFL ANSFRLNFV +APDFIFNCGG+S++FVF+TNWDC+N
Sbjct: 1 MMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWDCNNY 60
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
FSR+KKLKEQFAH Y+V+ LPTREQNDSFV SYFK GMELGRPTFVPVQD EMGFEK
Sbjct: 61 LPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEMGFEK 120
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAH+RGVCKRQD ISKL+AER+++VQ MDVFLRV+TSIP IDNHDAN+LNQAIGSI+
Sbjct: 121 IVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAIGSIK 180
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK YILENTDLS++KAE I RFFRDPK YLSPKIN
Sbjct: 181 AIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 220
>gi|225460065|ref|XP_002271557.1| PREDICTED: uncharacterized protein LOC100253283 [Vitis vinifera]
Length = 248
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/220 (81%), Positives = 200/220 (90%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
MM + WRDEQHPSFINFISSFL ANSFRLNFV +APDFIFNCGG+S++FVF+TNWDC+N
Sbjct: 29 MMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWDCNNY 88
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
FSR+KKLKEQFAH Y+V+ LPTREQNDSFV SYFK GMELGRPTFVPVQD EMGFEK
Sbjct: 89 LPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEMGFEK 148
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAH+RGVCKRQD ISKL+AER+++VQ MDVFLRV+TSIP IDNHDAN+LNQAIGSI+
Sbjct: 149 IVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAIGSIK 208
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK YILENTDLS++KAE I RFFRDPK YLSPKIN
Sbjct: 209 AIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 248
>gi|224056561|ref|XP_002298911.1| predicted protein [Populus trichocarpa]
gi|222846169|gb|EEE83716.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/220 (79%), Positives = 198/220 (90%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
MM++KWRDEQHPSFINFI+SFLSANSFRLNFV +APD IFNCGG+S++F+F+TNWDC N
Sbjct: 22 MMNTKWRDEQHPSFINFIASFLSANSFRLNFVPIAPDCIFNCGGLSVAFIFVTNWDCQNC 81
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
+FSR+KKLK QFA+ YVV++LP +EQNDSFV SYFKYGMELG+PTFVPVQD EMGFEK
Sbjct: 82 EPIFSRVKKLKGQFANLYVVVSLPIKEQNDSFVHSYFKYGMELGKPTFVPVQDLEMGFEK 141
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHSRG CKRQDA+SKLKAER+++VQ M FLRVVTSIP IDNHDANALNQAIGSIE
Sbjct: 142 IVKIAHSRGTCKRQDALSKLKAERKQSVQGMGNFLRVVTSIPGIDNHDANALNQAIGSIE 201
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK YILENTDLSA+ AE + +FFRDPK YL PKIN
Sbjct: 202 AIAKASKGYILENTDLSADNAETVTKFFRDPKFYLGPKIN 241
>gi|255569086|ref|XP_002525512.1| conserved hypothetical protein [Ricinus communis]
gi|223535191|gb|EEF36870.1| conserved hypothetical protein [Ricinus communis]
Length = 248
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 171/220 (77%), Positives = 194/220 (88%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
MM+SKW+ EQ PSFINF+SSFLSANSFRLNFV ++PD IFNCGGMS++F+FITNWDC N
Sbjct: 29 MMNSKWKQEQSPSFINFVSSFLSANSFRLNFVPISPDCIFNCGGMSVAFIFITNWDCDNV 88
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
+F+R++KLK QFA+ YVV+ LPT+ NDSFVRSYFK+GME GRPTFVPV D+EMGFEK
Sbjct: 89 MPIFTRVEKLKGQFANLYVVVCLPTKNHNDSFVRSYFKFGMEFGRPTFVPVLDKEMGFEK 148
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIA SRG CK+QD ISKLKAERR+A+Q MD+FLRVVTSIP IDNHDANALNQAIGSIE
Sbjct: 149 IVKIALSRGACKKQDVISKLKAERRQAMQGMDIFLRVVTSIPGIDNHDANALNQAIGSIE 208
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK ILE TDLSAEKA+ I RFFRDPK YLSPKIN
Sbjct: 209 AIAKASKERILETTDLSAEKADTITRFFRDPKYYLSPKIN 248
>gi|449442112|ref|XP_004138826.1| PREDICTED: uncharacterized protein LOC101220741 [Cucumis sativus]
gi|449490245|ref|XP_004158549.1| PREDICTED: uncharacterized LOC101220741 [Cucumis sativus]
Length = 247
Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 161/220 (73%), Positives = 195/220 (88%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ WRDEQHPSFINFIS+FL +NSFRLNFV +APD IFNCGG+S++F F+T+W+C NT
Sbjct: 28 LMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWECSNT 87
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
+ +FSR++KLK+QFA+ YVV+ LPT+EQNDSFV+SYF+ GME+G+P FV VQD EMGFEK
Sbjct: 88 SSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEMGFEK 147
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHSRG CK+QD ISKL+ ER+R+VQ MD F RV++S+P +D+HDAN+LNQAIGSIE
Sbjct: 148 IVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIE 207
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK YILENTDLS EKAE I FFRDPKLYLSPKIN
Sbjct: 208 AIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 247
>gi|356541056|ref|XP_003538999.1| PREDICTED: uncharacterized protein LOC100786486 [Glycine max]
Length = 235
Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 151/220 (68%), Positives = 190/220 (86%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+M + W+++QHPSFINFIS+FLSANSFRLNFV +APDFIFNCGG+S++F+F+TNWDC+N
Sbjct: 16 LMRNAWKEDQHPSFINFISTFLSANSFRLNFVPIAPDFIFNCGGLSVAFIFVTNWDCNNV 75
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +F+R+KKLK QFA FYVV+ LP +EQ DS ++SYFK+GM +G+PTFVPVQD EMGFEK
Sbjct: 76 APIFNRVKKLKMQFARFYVVITLPAKEQFDSLIQSYFKFGMVIGKPTFVPVQDSEMGFEK 135
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
++KIAHS GV K++ KLKAER++ VQ M+ +L+V+TSIP IDNHDAN+L+QAIGS++
Sbjct: 136 MVKIAHSSGVYKQERIGEKLKAERKQLVQGMNFYLKVLTSIPGIDNHDANSLSQAIGSVQ 195
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK ILENTDLS +KAEM+ RF RDPK YL PKIN
Sbjct: 196 AIAKASKEQILENTDLSTDKAEMVSRFLRDPKFYLCPKIN 235
>gi|356544319|ref|XP_003540600.1| PREDICTED: uncharacterized protein LOC100780115 [Glycine max]
Length = 235
Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 189/220 (85%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+M + W+++QHPSFINFIS+FLSANSFRLNFV +APDFIFNCGG+S++F+F+TNWDC+N
Sbjct: 16 LMRNAWKEDQHPSFINFISTFLSANSFRLNFVPIAPDFIFNCGGLSVAFIFVTNWDCNNV 75
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +F+R+KKLK QFA FYVV+ P +EQ DSF++SYFK+GM +G+PTFV VQD EMGFEK
Sbjct: 76 APIFNRVKKLKMQFARFYVVITFPAKEQIDSFIQSYFKFGMVIGKPTFVSVQDLEMGFEK 135
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHS GV K++ KLKAER++ VQ M+ +L+VVTSIP IDNHDANAL+QAIGS++
Sbjct: 136 IVKIAHSSGVYKQERIGEKLKAERKQLVQGMNFYLKVVTSIPGIDNHDANALSQAIGSVQ 195
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK ILENTDLS +KAEM+ RF RDPK YL PKIN
Sbjct: 196 AIAKASKEQILENTDLSTDKAEMVSRFLRDPKFYLRPKIN 235
>gi|115465747|ref|NP_001056473.1| Os05g0588200 [Oryza sativa Japonica Group]
gi|48475097|gb|AAT44166.1| unknown protein [Oryza sativa Japonica Group]
gi|113580024|dbj|BAF18387.1| Os05g0588200 [Oryza sativa Japonica Group]
gi|215766440|dbj|BAG98668.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632738|gb|EEE64870.1| hypothetical protein OsJ_19727 [Oryza sativa Japonica Group]
Length = 248
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 156/219 (71%), Positives = 184/219 (84%)
Query: 2 MSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTA 61
MS+ WRD+Q PS INFI++FL+ANS+RLNF+ ++PDFIFN G +S++F+F TNWDC N
Sbjct: 30 MSTSWRDKQQPSLINFIAAFLAANSYRLNFLSISPDFIFNNGELSVAFIFETNWDCQNEG 89
Query: 62 VVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKI 121
VFSR+ LK Q H YVV+A+PT+EQN+SF RSY KYGM+LG PTFVPV D EMGFEKI
Sbjct: 90 AVFSRVNMLKRQLKHLYVVVAVPTKEQNESFNRSYHKYGMKLGFPTFVPVTDPEMGFEKI 149
Query: 122 IKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEA 181
+KIAH+ GVCK+QD IS+LK ER +AVQ D FLRV+TSIP IDNHDANAL QAIGSIEA
Sbjct: 150 VKIAHALGVCKQQDIISRLKNEREQAVQCTDSFLRVLTSIPGIDNHDANALAQAIGSIEA 209
Query: 182 IAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
IAKASK +ILENTDLS +KAE IVRFFRDP+ YLSPKIN
Sbjct: 210 IAKASKKFILENTDLSTDKAETIVRFFRDPQYYLSPKIN 248
>gi|47777360|gb|AAT37994.1| unknown protein [Oryza sativa Japonica Group]
Length = 292
Score = 335 bits (859), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 156/219 (71%), Positives = 184/219 (84%)
Query: 2 MSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTA 61
MS+ WRD+Q PS INFI++FL+ANS+RLNF+ ++PDFIFN G +S++F+F TNWDC N
Sbjct: 74 MSTSWRDKQQPSLINFIAAFLAANSYRLNFLSISPDFIFNNGELSVAFIFETNWDCQNEG 133
Query: 62 VVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKI 121
VFSR+ LK Q H YVV+A+PT+EQN+SF RSY KYGM+LG PTFVPV D EMGFEKI
Sbjct: 134 AVFSRVNMLKRQLKHLYVVVAVPTKEQNESFNRSYHKYGMKLGFPTFVPVTDPEMGFEKI 193
Query: 122 IKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEA 181
+KIAH+ GVCK+QD IS+LK ER +AVQ D FLRV+TSIP IDNHDANAL QAIGSIEA
Sbjct: 194 VKIAHALGVCKQQDIISRLKNEREQAVQCTDSFLRVLTSIPGIDNHDANALAQAIGSIEA 253
Query: 182 IAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
IAKASK +ILENTDLS +KAE IVRFFRDP+ YLSPKIN
Sbjct: 254 IAKASKKFILENTDLSTDKAETIVRFFRDPQYYLSPKIN 292
>gi|21594043|gb|AAM65961.1| DNA ligase-like protein [Arabidopsis thaliana]
Length = 250
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/220 (68%), Positives = 178/220 (80%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ W+ EQ PS INFIS+FLSANSFRLNFV + PD IFNCGG+SI+FVF+T WDC N
Sbjct: 31 IMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDCSNV 90
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +FSR+K+LK QFA YVV L T+EQ+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct: 91 ASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDGEMGFEK 150
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHSRGVCK+Q SKLK ER+R VQ ++F+R VTSIP I+ HDAN L QAIGSIE
Sbjct: 151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIE 210
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK IL NTDLS+EKA+ + RFF+DP+ YLSPK N
Sbjct: 211 AIAKASKEDILANTDLSSEKADTLTRFFQDPEFYLSPKFN 250
>gi|297849664|ref|XP_002892713.1| hypothetical protein ARALYDRAFT_471432 [Arabidopsis lyrata subsp.
lyrata]
gi|297338555|gb|EFH68972.1| hypothetical protein ARALYDRAFT_471432 [Arabidopsis lyrata subsp.
lyrata]
Length = 250
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/220 (67%), Positives = 178/220 (80%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ W+DEQ PS I+FIS+FL+ANSFRLNFV + PD IFNCGG+SI+FVF+T WDC
Sbjct: 31 IMSNAWKDEQEPSLISFISAFLTANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDCSTV 90
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +FSR+K+LK QFA YVV+ L T+ Q+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct: 91 ASIFSRVKRLKGQFAQLYVVVTLSTKAQSDSFMRSYFQYEMEFGKPAFVQVIDAEMGFEK 150
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHSRGVCK+Q SKLK ER+R VQ ++F+R VTSIP I+ HDAN L QAIGSIE
Sbjct: 151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIE 210
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK IL NTDLS+EKAE + RFF+DP+ YLSPK N
Sbjct: 211 AIAKASKEDILANTDLSSEKAETLTRFFQDPEFYLSPKFN 250
>gi|357167474|ref|XP_003581181.1| PREDICTED: uncharacterized protein LOC100841911 [Brachypodium
distachyon]
Length = 249
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/220 (67%), Positives = 182/220 (82%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
MMS+ WRD+QHP +NFI++FL+ANS+RLNF+ ++PDFI N GG+S++F+F T+WDC N
Sbjct: 30 MMSTSWRDKQHPDLVNFIAAFLAANSYRLNFLSISPDFIINNGGLSVAFIFETSWDCENE 89
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A VFSR+ LK QF + YVV+A+PT EQ +SF +SYF+Y MELG PTFVPV D EMGFEK
Sbjct: 90 AAVFSRVNTLKRQFKNLYVVVAVPTVEQIESFNQSYFRYDMELGCPTFVPVNDPEMGFEK 149
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
++KIAH+RGVCK+QD S +K ER +AVQ MD FL+VVTSIP IDNHDAN L QAIGSIE
Sbjct: 150 MLKIAHARGVCKQQDISSTMKNEREQAVQCMDAFLQVVTSIPGIDNHDANMLAQAIGSIE 209
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKA K+ ILE+TDLS +KAE +VRFFRD + YLSPKIN
Sbjct: 210 AIAKAPKSLILESTDLSTDKAETVVRFFRDRQYYLSPKIN 249
>gi|357446125|ref|XP_003593340.1| hypothetical protein MTR_2g010410 [Medicago truncatula]
gi|355482388|gb|AES63591.1| hypothetical protein MTR_2g010410 [Medicago truncatula]
Length = 326
Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 187/221 (84%), Gaps = 1/221 (0%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+M + W+++QHPSFI+FIS+FLSANSFRL FV +APDFIFNCGG+S++F+F+TNWD +N
Sbjct: 106 LMRNAWKEDQHPSFIDFISTFLSANSFRLKFVPIAPDFIFNCGGLSVAFIFVTNWDSNNL 165
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +F+R++KLK QF+ FYVV+ LP +E+ DSF +SYFK+GM +G+PTFVPV+D EMGFEK
Sbjct: 166 APIFNRVQKLKTQFSRFYVVITLPAKEEIDSFTQSYFKFGMVIGKPTFVPVKDFEMGFEK 225
Query: 121 IIKIAHSRGVCKRQDAISKLKAE-RRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSI 179
++KIAHS GV K+Q KLKAE R++ VQ M+ +L+VVTSIP IDNHDANAL+QAIGS+
Sbjct: 226 MLKIAHSTGVYKQQRIEEKLKAEVRKQLVQGMNFYLKVVTSIPGIDNHDANALSQAIGSV 285
Query: 180 EAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
+AIAK SK ILENTDLS +KAEMI RF RDPK YL PKIN
Sbjct: 286 QAIAKVSKGQILENTDLSTDKAEMISRFLRDPKSYLRPKIN 326
>gi|18391434|ref|NP_563913.1| uncharacterized protein [Arabidopsis thaliana]
gi|332190808|gb|AEE28929.1| uncharacterized protein [Arabidopsis thaliana]
Length = 250
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/220 (67%), Positives = 177/220 (80%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ W+ EQ PS INFIS+FLSANSFRLNFV + PD IFNCGG+SI+FVF+T WD N
Sbjct: 31 IMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDFSNV 90
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +FSR+K+LK QFA YVV L T+EQ+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct: 91 ASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMGFEK 150
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHSRGVCK+Q SKLK ER+R VQ ++F+R VTSIP I+ HDAN L QAIGSIE
Sbjct: 151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIE 210
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK IL NTDLS++KA+ + RFF+DP+ YLSPK N
Sbjct: 211 AIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250
>gi|90962964|gb|ABE02406.1| At1g12790 [Arabidopsis thaliana]
Length = 250
Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 176/220 (80%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ W+ EQ PS INFIS+FLSANSFRLNFV + PD IFNCGG+SI+FVF+T WD N
Sbjct: 31 IMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDFSNV 90
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +FSR+K+LK QFA YVV L T+EQ+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct: 91 ASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMGFEK 150
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I+KIAHSRGVCK+Q SKLK ER+R VQ ++F+R VTSIP I+ HDAN L QAIGSIE
Sbjct: 151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIE 210
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK IL NTDLS++KA+ + RFF+DP+ LSPK N
Sbjct: 211 AIAKASKEDILANTDLSSKKADTLTRFFQDPEFDLSPKFN 250
>gi|8698726|gb|AAF78484.1|AC012187_4 Contains weak similarity to DNA Ligase from Bacillus
stearothermophilus gi|7673996 and contains a
helix-hairpin-helix PF|00633 motif [Arabidopsis
thaliana]
Length = 260
Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/230 (64%), Positives = 177/230 (76%), Gaps = 10/230 (4%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ W+ EQ PS INFIS+FLSANSFRLNFV + PD IFNCGG+SI+FVF+T WD N
Sbjct: 31 IMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDFSNV 90
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A +FSR+K+LK QFA YVV L T+EQ+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct: 91 ASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMGFEK 150
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANA--------- 171
I+KIAHSRGVCK+Q SKLK ER+R VQ ++F+R VTSIP I+ HDAN
Sbjct: 151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTVMFTYEQVQ 210
Query: 172 -LNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
L QAIGSIEAIAKASK IL NTDLS++KA+ + RFF+DP+ YLSPK N
Sbjct: 211 VLYQAIGSIEAIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 260
>gi|242091551|ref|XP_002441608.1| hypothetical protein SORBIDRAFT_09g030240 [Sorghum bicolor]
gi|241946893|gb|EES20038.1| hypothetical protein SORBIDRAFT_09g030240 [Sorghum bicolor]
Length = 238
Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/220 (64%), Positives = 179/220 (81%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
MMS+ WRD+Q P +NFI++FL+ N +RLNF+ ++PDF+FN GG+S++F+F T+W
Sbjct: 19 MMSTSWRDKQRPDLVNFIATFLATNLYRLNFLSLSPDFLFNNGGLSVAFIFETDWLPERE 78
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A VFSR+ LK QF + YVV+ + + EQN+SF +SYFKY MELG PTFVPV D EMGFEK
Sbjct: 79 AAVFSRVNTLKRQFKYLYVVVVVRSAEQNESFNQSYFKYDMELGCPTFVPVCDPEMGFEK 138
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I++IAH+RGVCK++D ++ + ER +AVQ MD FLRV+TSIP ID+HDANAL QAIGSIE
Sbjct: 139 IVRIAHARGVCKQKDLVTAMGIEREQAVQCMDAFLRVLTSIPGIDSHDANALAQAIGSIE 198
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK +ILENTDLS EKAE IVRFFRDP+ +LSPKIN
Sbjct: 199 AIAKASKEFILENTDLSTEKAERIVRFFRDPQYFLSPKIN 238
>gi|413948654|gb|AFW81303.1| hypothetical protein ZEAMMB73_164413 [Zea mays]
Length = 301
Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/220 (64%), Positives = 179/220 (81%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ WRD+Q P +NF+++FL+ N +RLNF+ ++PDFIFN GG+S++F F T+W
Sbjct: 82 LMSTSWRDKQRPELVNFVATFLATNMYRLNFMSLSPDFIFNNGGLSVAFAFETDWLPERE 141
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A VFSR+ LK QF + YVV+ + + EQN+SF +SYFKYGMELG PTFVPV D MGFEK
Sbjct: 142 AAVFSRVTTLKRQFKYLYVVVVVRSAEQNESFNQSYFKYGMELGCPTFVPVCDPAMGFEK 201
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I++IAH+RGVCK++D I+ ++ ER +AVQ MD FLRV+TSIP ID+HDANAL QAIGSIE
Sbjct: 202 IVRIAHARGVCKQKDNIATMRIEREQAVQCMDAFLRVLTSIPGIDSHDANALAQAIGSIE 261
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK +ILENTDLS EKAE IVRFFRDP+ +LSPK+N
Sbjct: 262 AIAKASKEFILENTDLSTEKAERIVRFFRDPQYFLSPKLN 301
>gi|242095058|ref|XP_002438019.1| hypothetical protein SORBIDRAFT_10g006566 [Sorghum bicolor]
gi|241916242|gb|EER89386.1| hypothetical protein SORBIDRAFT_10g006566 [Sorghum bicolor]
Length = 226
Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 138/220 (62%), Positives = 178/220 (80%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+MS+ WRD+Q P +NFI++FL+ N +RLNF+ ++PDF+FN GG+S++F+F T+W
Sbjct: 7 LMSTSWRDKQRPDLVNFIATFLATNLYRLNFLSLSPDFLFNNGGLSVAFIFETDWLPERE 66
Query: 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
A VFSR+ LK QF + YVV+ + + EQN+SF +SYFKYGMELG PTFVPV D EMGFEK
Sbjct: 67 AAVFSRVNTLKRQFKYLYVVVVVRSAEQNESFNQSYFKYGMELGCPTFVPVCDPEMGFEK 126
Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
I++IAH+RGV K+++ + ++ ER +AVQ MD FLRV+TSIP ID+HDANAL QAIGSIE
Sbjct: 127 IVRIAHARGVSKQKNIVEAMRIEREQAVQCMDAFLRVLTSIPGIDSHDANALAQAIGSIE 186
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
AIAKASK +ILENTDLS EKAE I RFFRDP+ +LSPK+N
Sbjct: 187 AIAKASKEFILENTDLSTEKAERIFRFFRDPQYFLSPKLN 226
>gi|326525325|dbj|BAK07932.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 238
Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 130/184 (70%), Positives = 154/184 (83%)
Query: 37 DFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSY 96
DFIFN GG+S++F+F TNWDC N A VFSR+ LK Q+ + YVV+A+PT EQ +SF +SY
Sbjct: 55 DFIFNNGGLSVAFIFETNWDCGNGAAVFSRVNALKRQYKNLYVVVAVPTVEQIESFNQSY 114
Query: 97 FKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLR 156
FKYGMELG PTFVPV D EMGFE ++KIAH+RGVCK+QD S ++ ER +AVQ+MD ++R
Sbjct: 115 FKYGMELGCPTFVPVNDSEMGFEMMLKIAHARGVCKQQDISSTMRNEREQAVQSMDAYIR 174
Query: 157 VVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLS 216
VVTSIP ID+HDAN L QAIGSIEAIAKASKT ILENTDLS +KAE IVRFFRDP+ YLS
Sbjct: 175 VVTSIPGIDDHDANMLAQAIGSIEAIAKASKTSILENTDLSTDKAETIVRFFRDPQFYLS 234
Query: 217 PKIN 220
PKIN
Sbjct: 235 PKIN 238
>gi|302788260|ref|XP_002975899.1| hypothetical protein SELMODRAFT_104766 [Selaginella moellendorffii]
gi|300156175|gb|EFJ22804.1| hypothetical protein SELMODRAFT_104766 [Selaginella moellendorffii]
Length = 246
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 3/208 (1%)
Query: 3 SSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAV 62
S WR ++ +S+ L A S+RL F +APDFI + G+SI+FV + D T +
Sbjct: 33 SELWRQSHSQDAVSTLSALLQAASYRLRFSAIAPDFILSNAGVSIAFVVV---DDDLTFM 89
Query: 63 VFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKII 122
RI K++ F + YV++ L + F YF G + +P +PV + M EK+I
Sbjct: 90 YLRRILKMRGTFQNSYVIVTLSSEADYSVFSEFYFSLGFDGEKPACIPVPSKHMALEKMI 149
Query: 123 KIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAI 182
+IA CKRQ + ER++ VQ+ D + V+SIP ++ HDA++L Q +GS+EAI
Sbjct: 150 RIAFVHAECKRQGITGMVDLERKQFVQSEDARMACVSSIPRLELHDAHSLVQGVGSLEAI 209
Query: 183 AKASKTYILENTDLSAEKAEMIVRFFRD 210
+++S+ I+E TDLS + AE +++ F D
Sbjct: 210 SRSSRESIMETTDLSVDSAESVMKLFND 237
>gi|302770328|ref|XP_002968583.1| hypothetical protein SELMODRAFT_440438 [Selaginella moellendorffii]
gi|300164227|gb|EFJ30837.1| hypothetical protein SELMODRAFT_440438 [Selaginella moellendorffii]
Length = 384
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 6/209 (2%)
Query: 3 SSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT-A 61
S WR ++ +S+ L A S+RL F +APDFI + G+SI+FV + D H A
Sbjct: 8 SELWRQSHPQDAVSTLSALLQAASYRLRFSAIAPDFILSNAGVSIAFVVVD--DVHKELA 65
Query: 62 VVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKI 121
RI K++ F + YV++ L + F YF G + +P F+PV + M EK+
Sbjct: 66 CEAERILKMRGTFQNSYVIVTLSSESDYSVFSEFYFSLGFDGDKPAFIPVPSKHMALEKM 125
Query: 122 IKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEA 181
I+IA CKRQ + ER++ VQ+ D + V+SIP ++ HDA++ +GS+EA
Sbjct: 126 IRIAFVHAECKRQGITGMVDLERKQFVQSEDARMACVSSIPKLELHDAHS---GVGSLEA 182
Query: 182 IAKASKTYILENTDLSAEKAEMIVRFFRD 210
I+++S+ I+E TDLS + AE +++ F D
Sbjct: 183 ISRSSRESIMETTDLSVDSAESVMKLFND 211
>gi|297844156|ref|XP_002889959.1| hypothetical protein ARALYDRAFT_888608 [Arabidopsis lyrata subsp.
lyrata]
gi|297335801|gb|EFH66218.1| hypothetical protein ARALYDRAFT_888608 [Arabidopsis lyrata subsp.
lyrata]
Length = 173
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFK----- 98
+SI+ VF+T WDC N A +F+R+K+LK QFA YVV L T+EQ+DSF+RSYF
Sbjct: 10 SVSIASVFVTKWDCSNVASIFNRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFHSISLF 69
Query: 99 --YGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLR 156
LG +++++ G CK+Q SKLK ER+R VQ D+F+R
Sbjct: 70 VDMRWSLGNLHLYKSLMLRWDSRRLLRLLTLVGCCKQQKVASKLKVERKRIVQDTDIFIR 129
Query: 157 VVTSIPLIDNHDANALNQAIGSIEAIAKASKTYIL 191
VTSIP I+ HDAN L QAIGSIEAIAKASK IL
Sbjct: 130 FVTSIPNINKHDANTLCQAIGSIEAIAKASKEDIL 164
>gi|358345044|ref|XP_003636594.1| DNA ligase-like protein [Medicago truncatula]
gi|355502529|gb|AES83732.1| DNA ligase-like protein [Medicago truncatula]
Length = 95
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 18/84 (21%)
Query: 1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
+M + W+++Q PSFI+F+S+FLSANS L+FV ++ D C N
Sbjct: 28 LMRNAWKEDQRPSFIDFMSTFLSANSSLLSFVTISTD----CSN--------------NV 69
Query: 61 AVVFSRIKKLKEQFAHFYVVLALP 84
A++FSR+ KLK QF+ F VV+ LP
Sbjct: 70 ALIFSRVHKLKTQFSRFDVVITLP 93
>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
Length = 675
Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211
IP I A L GSI+A+AKAS+ ILE D+ A+ IV++F DP
Sbjct: 524 IPGIGRTAARELMLHFGSIDALAKASEEEILEVRDMGEISAKAIVQYFNDP 574
>gi|15893799|ref|NP_347148.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
gi|337735722|ref|YP_004635169.1| excinuclease ABC subunit C [Clostridium acetobutylicum DSM 1731]
gi|384457233|ref|YP_005669653.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018]
gi|21363070|sp|Q97LP6.1|UVRC_CLOAB RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|15023370|gb|AAK78488.1|AE007565_7 Excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
gi|325507922|gb|ADZ19558.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018]
gi|336293462|gb|AEI34596.1| excinuclease ABC subunit C [Clostridium acetobutylicum DSM 1731]
Length = 623
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
V + QD + + R+++ V V+ IP I AL + GSIE I KA+
Sbjct: 539 VTRVQDEVHRFAITYHRSLRDKRVLHSVLDDIPYIGEKRRKALLKHFGSIENIKKATYEE 598
Query: 190 ILENTDLSAEKAEMIVRFFRDPK 212
+++ + + AE IV +FR K
Sbjct: 599 LMKTPSIDKKAAESIVSYFRGRK 621
>gi|294675950|ref|YP_003576565.1| UvrABC system protein C [Rhodobacter capsulatus SB 1003]
gi|294474770|gb|ADE84158.1| UvrABC system protein C [Rhodobacter capsulatus SB 1003]
Length = 631
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 113 DREMGFEKIIKIAHSRGVCKRQDA----ISKLKAE-------RRRAVQTMDVFLRVVTSI 161
DR++G E+ +I H RQD I +L+ E RA + + I
Sbjct: 521 DRDLGKEEFHRIGHRPMALPRQDPVLYYIQRLRDEAHRWAIGAHRAKRAKATMANPLDEI 580
Query: 162 PLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210
P I AL GS +A+++A ++ ++E +SA AE I FF D
Sbjct: 581 PGIGATRKRALLAHFGSAKAVSRAGESDLMEVPGISAAMAETIWNFFND 629
>gi|124359211|gb|ABN05722.1| hypothetical protein MtrDRAFT_AC148396g10v2 [Medicago truncatula]
Length = 45
Score = 39.7 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 116 MGFEKIIKIAHSRGVCKRQDAISKLKAE 143
MGFEK++KIAHS GV K+Q KLKAE
Sbjct: 1 MGFEKMLKIAHSTGVYKQQRIEEKLKAE 28
>gi|71666792|ref|XP_820352.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70885692|gb|EAN98501.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 657
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 107 TFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDN 166
TF+ Q RE K K + KR I+K+K E RR + +LR+ S+P
Sbjct: 535 TFLTEQQRE----KKQKEEGQKESAKRNKEIAKMKLEERRRAAEKEYWLRMARSVPKEHQ 590
Query: 167 HDANALNQAIGSIEAIAKASKTYILENTDLSAEKAE---MIVRFFRDP---KLYLSPKI 219
AL + + A + K I++ L A+ AE ++ ++ + +LY+ PK+
Sbjct: 591 RVWGALEKGLKLYIAQLQQRKNLIVDTDSLRAQNAELRALLTQYLQSDMNYQLYMPPKL 649
>gi|118443548|ref|YP_877364.1| excinuclease ABC subunit C [Clostridium novyi NT]
gi|189038040|sp|A0PYB2.1|UVRC_CLONN RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|118134004|gb|ABK61048.1| excinuclease ABC, C subunit [Clostridium novyi NT]
Length = 621
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
+ + QD + + R+++ V V+ IP I L Q GS+E I KAS
Sbjct: 539 ITRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNIGEKRRKELLQKFGSVENIKKASYDE 598
Query: 190 ILENTDLSAEKAEMIVRFFRDPK 212
+L+ ++ + A+ I+ +F + K
Sbjct: 599 LLDTNSINQKAAKSIIDYFNNAK 621
>gi|168185645|ref|ZP_02620280.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund]
gi|169296408|gb|EDS78541.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund]
Length = 621
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
+ + QD + + R+++ V V+ IP + L Q GSIE I KAS
Sbjct: 539 ITRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNVGQKRRKELLQKFGSIENIKKASYEE 598
Query: 190 ILENTDLSAEKAEMIVRFFRDPK 212
+L+ ++ + A+ I+ +F + K
Sbjct: 599 LLDTDSINEKAAKSIIDYFNNDK 621
>gi|334881381|emb|CCB82249.1| tRNA modification GTPase mnmE [Lactobacillus pentosus MP-10]
Length = 463
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 122 IKIAHSRGVCKRQDAISKLKAER-RRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
+K+ + G+ +D + K+ ER R+A+ D+ L V+ S + D L +
Sbjct: 274 LKLVDTAGIRDTEDKVEKIGVERSRKAIGAADLVLLVLDSSRPLTTEDQELLQET----- 328
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLS 216
A++ + IL TDL A+ + + F DPK LS
Sbjct: 329 --AQSKRIVILNKTDLPAQLDQAELAKFVDPKDVLS 362
>gi|392950364|ref|ZP_10315921.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
pentosus KCA1]
gi|339638039|emb|CCC17079.1| tRNA modification GTPase mnme [Lactobacillus pentosus IG1]
gi|392434646|gb|EIW12613.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
pentosus KCA1]
Length = 463
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 122 IKIAHSRGVCKRQDAISKLKAER-RRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
+K+ + G+ +D + K+ ER R+A+ D+ L V+ S + D L +
Sbjct: 274 LKLVDTAGIRDTEDKVEKIGVERSRKAIGAADLVLLVLDSSRPLTTEDQELLQET----- 328
Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLS 216
A++ + IL TDL A+ + + F DPK LS
Sbjct: 329 --AQSKRIVILNKTDLPAQLDQAELAKFVDPKDVLS 362
>gi|347530785|ref|YP_004837548.1| excinuclease ABC subunit C [Roseburia hominis A2-183]
gi|345500933|gb|AEN95616.1| excinuclease ABC subunit C [Roseburia hominis A2-183]
Length = 628
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 109 VPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHD 168
+P+ GF+ I +I QD + E R++++ + V+ IP I
Sbjct: 527 IPIDRGSEGFKLITRI---------QDEAHRFAIEYHRSLRSKEQVHSVLDDIPDIGPAR 577
Query: 169 ANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210
AL + S+EAI +A++ + + +S + A + RFFR+
Sbjct: 578 RKALMKKYQSLEAIREATEEDLAQTDSMSPQAARSVYRFFRE 619
>gi|240143365|ref|ZP_04741966.1| excinuclease ABC subunit C [Roseburia intestinalis L1-82]
gi|257204738|gb|EEV03023.1| excinuclease ABC subunit C [Roseburia intestinalis L1-82]
Length = 626
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 109 VPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHD 168
+P+ GF+ I +I QD + E R++++ + V+ IP I +
Sbjct: 527 IPIDRTSEGFKLITRI---------QDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGSAR 577
Query: 169 ANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212
AL + S+EAI +AS+ + + ++ + A + FFR+ K
Sbjct: 578 RKALMRRFQSLEAIREASEEELAKTESMNEQAARAVYSFFREDK 621
>gi|407849653|gb|EKG04330.1| hypothetical protein TCSYLVIO_004612 [Trypanosoma cruzi]
Length = 687
Score = 37.0 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 107 TFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDN 166
TF+ + RE K K + KR ++K+K E RR + +LR+ S+P
Sbjct: 535 TFLTEKQRE----KKQKEEGQKESAKRNKEMAKMKLEERRRAAEKEYWLRMARSVPKEHQ 590
Query: 167 HDANALNQAIGSIEAIAKASKTYILENTDLSAEKAE---MIVRFFR---DPKLYLSPKI 219
AL + + A + K I++ L A+ AE ++ ++ + + +LY+ PKI
Sbjct: 591 RVWGALEKGLKLYIAQLQQRKNLIVDTDSLRAQNAELRALLTQYLQSDVNYQLYIPPKI 649
>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
gi|254781438|sp|B9K734.1|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
Length = 693
Score = 37.0 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212
IP++ A L + S+EAIA+AS + + + E A IV +FR+PK
Sbjct: 524 IPMVGQKTAKILAEHFKSLEAIAEASYETLKDIPGIGPEIARSIVEYFRNPK 575
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,036,835,194
Number of Sequences: 23463169
Number of extensions: 109158422
Number of successful extensions: 346050
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 346007
Number of HSP's gapped (non-prelim): 47
length of query: 220
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 83
effective length of database: 9,144,741,214
effective search space: 759013520762
effective search space used: 759013520762
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)