BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042199
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q97LP6|UVRC_CLOAB UvrABC system protein C OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=uvrC PE=3 SV=1
Length = 623
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
V + QD + + R+++ V V+ IP I AL + GSIE I KA+
Sbjct: 539 VTRVQDEVHRFAITYHRSLRDKRVLHSVLDDIPYIGEKRRKALLKHFGSIENIKKATYEE 598
Query: 190 ILENTDLSAEKAEMIVRFFRDPK 212
+++ + + AE IV +FR K
Sbjct: 599 LMKTPSIDKKAAESIVSYFRGRK 621
>sp|A0PYB2|UVRC_CLONN UvrABC system protein C OS=Clostridium novyi (strain NT) GN=uvrC
PE=3 SV=1
Length = 621
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
+ + QD + + R+++ V V+ IP I L Q GS+E I KAS
Sbjct: 539 ITRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNIGEKRRKELLQKFGSVENIKKASYDE 598
Query: 190 ILENTDLSAEKAEMIVRFFRDPK 212
+L+ ++ + A+ I+ +F + K
Sbjct: 599 LLDTNSINQKAAKSIIDYFNNAK 621
>sp|B9K734|DNLJ_THENN DNA ligase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359
/ NS-E) GN=ligA PE=3 SV=1
Length = 693
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212
IP++ A L + S+EAIA+AS + + + E A IV +FR+PK
Sbjct: 524 IPMVGQKTAKILAEHFKSLEAIAEASYETLKDIPGIGPEIARSIVEYFRNPK 575
>sp|B1LA51|DNLJ_THESQ DNA ligase OS=Thermotoga sp. (strain RQ2) GN=ligA PE=3 SV=1
Length = 688
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212
IP++ A L + S+EAIA AS + + + E A+ IV +FR+PK
Sbjct: 519 IPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRNPK 570
>sp|A5IKX0|DNLJ_THEP1 DNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=ligA PE=3 SV=1
Length = 688
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212
IP++ A L + S+EAIA AS + + + E A+ IV +FR+PK
Sbjct: 519 IPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRNPK 570
>sp|Q9WXV5|DNLJ_THEMA DNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=ligA PE=3 SV=1
Length = 688
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212
IP++ A L + S+EAIA AS + + + E A+ IV +FR+PK
Sbjct: 519 IPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRNPK 570
>sp|B9M861|DNLJ_GEOSF DNA ligase OS=Geobacter sp. (strain FRC-32) GN=ligA PE=3 SV=1
Length = 669
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 164 IDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211
+ H A L A GS+E + KA++ +L ++ + A+ + FFR+P
Sbjct: 522 VGEHTAKLLASAFGSVEHLEKATEEELLSIREVGPQVAQSVRTFFRNP 569
>sp|B4S9K0|UVRC_PROA2 UvrABC system protein C OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=uvrC PE=3 SV=1
Length = 616
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 146 RAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIV 205
R ++T +T I I A L + GSIE IAKA K IL T + AE I+
Sbjct: 551 RKLRTKRTIQTGLTDIAGIGEKSAMKLLEHFGSIEQIAKAEKEEILAVT--GPKTAEAIL 608
Query: 206 RFFR 209
+FR
Sbjct: 609 SYFR 612
>sp|Q890Y5|UVRC_CLOTE UvrABC system protein C OS=Clostridium tetani (strain Massachusetts
/ E88) GN=uvrC PE=3 SV=1
Length = 622
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
+ + QD + + R ++ V ++ IP I L + GSIE+I KAS
Sbjct: 539 ITRIQDEVHRFAISYHRTLRDKRVLKSILDDIPNIGTIRKKELLKKFGSIESIKKASIDQ 598
Query: 190 ILENTDLSAEKAEMIVRFF 208
+LE + A I FF
Sbjct: 599 LLETPSIDKRSALSIKEFF 617
>sp|Q74ER9|DNLJ_GEOSL DNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM
12127 / PCA) GN=ligA PE=3 SV=1
Length = 670
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 69 KLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELG-RPTFVPVQDREMGFEKIIKIAHS 127
+++E HF A+ + ++ + G+ + +D+ M F+++
Sbjct: 437 QIRESIIHFASRDAMDMEGLGEKYIEQLLRLGLVKNVADLYTLTKDQFMQFDRM------ 490
Query: 128 RGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASK 187
G ++ ++ ++A ++R + L I + H A L A GSIE + +A++
Sbjct: 491 -GDKLAENLLNAIEASKQRELSRFIFAL----GIRHVGEHTAKLLAGAFGSIENLERATE 545
Query: 188 TYILENTDLSAEKAEMIVRFFRD 210
+L ++ + A I+ FFR+
Sbjct: 546 EELLSIREVGPQVARSIITFFRN 568
>sp|Q4L776|FTHS_STAHJ Formate--tetrahydrofolate ligase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=fhs PE=3 SV=1
Length = 555
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 80 VLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFE--KIIKIAHSRGVCKRQDAI 137
+LA T V + +G +LG F+ ++ RE GFE ++ +A R + K +
Sbjct: 282 ILATETARDLADIVVTEAGFGSDLGAEKFIDIKAREAGFEPSAVVLVATVRAL-KMHGGV 340
Query: 138 SK--LKAERRRAVQTMDVFL-RVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILEN 193
+K LK E AV+ V L R V +I ALN I +A +A K + EN
Sbjct: 341 AKDDLKEENVEAVKAGIVNLERHVNNIRKFGVEPVIALNAFIHDTDAETEAVKAWAKEN 399
>sp|A6M2Y5|UVRC_CLOB8 UvrABC system protein C OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=uvrC PE=3 SV=1
Length = 621
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 134 QDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILEN 193
QD + + R+++ ++ IP I +L GSI+ I KA+ +LE
Sbjct: 543 QDEVHRFAITYHRSLRDKRTLHSILDDIPNIGQKRRMSLLMKFGSIDNIKKATLDELLET 602
Query: 194 TDLSAEKAEMIVRFFRDPK 212
+ + A ++ +FR+ K
Sbjct: 603 ESIDTKAANSVLEYFRNTK 621
>sp|A1QZU9|SYFB_BORT9 Phenylalanine--tRNA ligase beta subunit OS=Borrelia turicatae
(strain 91E135) GN=pheT PE=3 SV=1
Length = 564
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 108 FVPV-QDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDN 166
F+P+ DREM E+I ++ HS+G+ S + A + +D +V++ P+I++
Sbjct: 168 FIPLGMDREMSIEEINRV-HSKGI-----EYSTILASFNKYPLLLDDKDKVLSYPPVINS 221
Query: 167 HDANALNQAIGSIEAIAKASKTYILENTDLS 197
HD AL +G + + + T LE T LS
Sbjct: 222 HDIGAL--KVGDTDLFIEVTGTN-LEATLLS 249
>sp|Q3JAI1|DNLJ_NITOC DNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=ligA PE=3 SV=1
Length = 675
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 169 ANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211
A L + GS+EA+A S+ + + TD+ A I FFR P
Sbjct: 527 AQVLAKEFGSLEALASVSEERLQQVTDIGPIVAAHIAAFFRQP 569
>sp|Q39S28|DNLJ_GEOMG DNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=ligA PE=3 SV=1
Length = 671
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 69 KLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPT--FVPVQDREMGFEKIIKIAH 126
+++E HF A+ + ++ + G+ +G + +D M F+++
Sbjct: 437 QIRESIIHFASRNAMDMEGLGEKYIEQLLRLGL-VGNVADLYTLTRDDFMKFDRM----- 490
Query: 127 SRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKAS 186
G ++ ++ ++A ++R + L I + H A L A GSI+ +A+A+
Sbjct: 491 --GEKLAENLLNAIEASKKRELSRFIFAL----GIRHVGEHTAKLLATAFGSIDNLARAT 544
Query: 187 KTYILENTDLSAEKAEMIVRFFRD 210
+ +L ++ + A+ I FF +
Sbjct: 545 EAELLSIREIGPQVAQSITTFFHN 568
>sp|Q64I01|DHE4_GORGO Glutamate dehydrogenase 2, mitochondrial OS=Gorilla gorilla gorilla
GN=GLUD2 PE=3 SV=1
Length = 558
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 27 FRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTR 86
F+ +LV PD N GG+++S+ W + V + R+ E+ +++++++++
Sbjct: 417 FQERNILVIPDLYLNAGGVTVSYF---EWLKNLNHVSYGRLTFKYERDSNYHLLMSV--- 470
Query: 87 EQNDSFVRSYFKYGMELGRPTFVPVQD 113
+S R + K+G G VP D
Sbjct: 471 --QESLERKFGKHG---GTIPIVPTAD 492
>sp|Q4FUW9|DNLJ_PSYA2 DNA ligase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
GN=ligA PE=3 SV=1
Length = 691
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 71 KEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGV 130
+E HF A+ S++ S+F++G+ T + E+++ + G
Sbjct: 457 QEALIHFVSRRAMDIDGLGASWLISFFEHGL---VKTVADIYQLHNHQEELVTL-EKLGE 512
Query: 131 CKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYI 190
Q+ IS ++A + T+ F+ + I + A L Q G ++A+ AS +
Sbjct: 513 KSVQNIISAIEASKHT---TLSRFIYAL-GIRGVGETTAQNLAQQFGDLDALMSASIEKL 568
Query: 191 LENTDLSAEKAEMIVRFFRDP 211
L D+ A AE+ +FFR P
Sbjct: 569 LLTPDVGAITAELAYKFFRAP 589
>sp|Q11B27|MUTS_MESSB DNA mismatch repair protein MutS OS=Mesorhizobium sp. (strain BNC1)
GN=mutS PE=3 SV=1
Length = 881
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 109 VPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRV----VTSIPLI 164
VPV + +K+I + H VC++ + ++ K +AV DV V +T L+
Sbjct: 59 VPVHAADDYLQKLIALGHRVAVCEQMEDPAEAKKRGYKAVMRRDVVRLVTPGTITEEKLL 118
Query: 165 DNHDANALNQAIGSIEAIAKASKTYILENTDLS 197
D +AN L A+G + K S+ L D+S
Sbjct: 119 DPSEANYL-MALGRV----KGSEELALAWIDIS 146
>sp|Q1QDW8|DNLJ_PSYCK DNA ligase OS=Psychrobacter cryohalolentis (strain K5) GN=ligA PE=3
SV=1
Length = 691
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 72 EQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVC 131
E HF A+ S++ S+F++G+ T + E++I + G
Sbjct: 458 EALIHFVSRRAMDIDGLGASWLISFFEHGL---VKTVADIYQLHNHQEELITL-EKLGEK 513
Query: 132 KRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYIL 191
Q+ +S ++A ++ T+ F+ + I + A L Q G ++A+ AS +L
Sbjct: 514 SVQNILSAIEASKQ---TTLARFIYAL-GIRGVGETTAQNLAQQFGDLDALMSASIEKLL 569
Query: 192 ENTDLSAEKAEMIVRFFRDP 211
D+ A AE+ +FFR P
Sbjct: 570 LTPDVGAITAELTYKFFRAP 589
>sp|Q0AAV2|DNLJ_ALHEH DNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ligA
PE=3 SV=1
Length = 673
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 169 ANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211
A L + GS+EAI A ++ + E D+ A+ I FF +P
Sbjct: 526 ARRLAEHFGSLEAIMNADESALAETPDVGPVVAQAIAHFFAEP 568
>sp|Q8EWL9|DNLJ_MYCPE DNA ligase OS=Mycoplasma penetrans (strain HF-2) GN=ligA PE=3 SV=1
Length = 701
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 123 KIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAI 182
K R + K + + ++A + +M+ FL + I + A AL++ SIE +
Sbjct: 510 KTEFERSLFKDKSFTNIIEAIEKSKSNSMEKFLTGL-GIKYVGLRAAKALSKRFKSIEEL 568
Query: 183 AKASKTYILENTDLSAEKAEMIVRFFRDPK 212
A A++ I + D + +E +V +F DPK
Sbjct: 569 AMATREEIEQVPDTGEKMSESLVNWFSDPK 598
>sp|A5N361|UVRC_CLOK5 UvrABC system protein C OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=uvrC PE=3 SV=1
Length = 622
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 130 VCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY 189
+ + QD + + R++++ V V+ IP + L + S+E I KAS
Sbjct: 539 ITRIQDEVHRFAVTYHRSLRSKRVLHSVLEDIPNVGVKRRKELLKRFLSVENIKKASMEE 598
Query: 190 ILENTDLSAEKAEMIVRFFRDPK 212
++ + AE I+ +FR K
Sbjct: 599 LISTPSIDMRTAESIISYFRGYK 621
>sp|C1DN27|DNLJ_AZOVD DNA ligase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
GN=ligA PE=3 SV=1
Length = 784
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 161 IPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210
IP + A L +A+GS+ I KA ++ D+ E A I FFRD
Sbjct: 533 IPDVGEETAKRLARALGSLTRIEKALPEVLIWLPDVGLEVAHEIHSFFRD 582
>sp|Q5GSR4|UVRC_WOLTR UvrABC system protein C OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=uvrC PE=3 SV=1
Length = 606
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 154 FLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVR 206
F+ ++ I I + NAL GS+E I+KAS I +S E AE+I++
Sbjct: 548 FVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVILK 600
>sp|Q9M8W7|GLR11_ARATH Glutamate receptor 1.1 OS=Arabidopsis thaliana GN=GLR1.1 PE=2 SV=1
Length = 808
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 99 YGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAE------------RRR 146
YG+ G T V V R+ + II +A + + K A + + A+ +
Sbjct: 58 YGINNGYRTRVSVLVRDSQGDPIIALAAATDLLKNAKAEAIVGAQSLQEAKLLATISEKA 117
Query: 147 AVQTMDVFLRVVTSIPLIDN-----HDANALNQAIGS-IEAIAKASKTYILENTDLSAEK 200
V + FL S+ DN HD + + I S I+ + S I E+ D +E
Sbjct: 118 KVPVISTFLPNTLSLKKYDNFIQWTHDTTSEAKGITSLIQDFSCKSVVVIYEDADDWSES 177
Query: 201 AEMIVRFFRDPKLYLS 216
+++V F+D +Y++
Sbjct: 178 LQILVENFQDKGIYIA 193
>sp|Q9PKP2|DNLJ_CHLMU DNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ligA PE=3
SV=1
Length = 660
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 150 TMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFF 208
T+D FL + SIP + + A AL G+++ + KAS +L + + A I+ FF
Sbjct: 499 TLDRFLTAL-SIPFVGSSGAIALADHFGTLDKVMKASLDELLSIEGIGQKVAASIIDFF 556
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,918,075
Number of Sequences: 539616
Number of extensions: 2617195
Number of successful extensions: 9399
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 9367
Number of HSP's gapped (non-prelim): 60
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)