Query 042199
Match_columns 220
No_of_seqs 14 out of 16
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 06:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bgw_A XPF endonuclease; hydro 98.4 2.5E-06 8.5E-11 68.3 11.1 186 18-212 22-218 (219)
2 2a1j_A DNA repair endonuclease 98.0 2.2E-06 7.6E-11 59.1 1.7 53 157-211 5-58 (63)
3 1x2i_A HEF helicase/nuclease; 97.8 1E-05 3.6E-10 54.1 3.4 57 156-212 14-70 (75)
4 2a1j_B DNA excision repair pro 97.8 5.6E-06 1.9E-10 59.1 1.6 63 151-213 27-89 (91)
5 1z00_A DNA excision repair pro 97.8 7E-06 2.4E-10 58.1 1.8 61 154-214 17-77 (89)
6 1kft_A UVRC, excinuclease ABC 97.7 4.8E-05 1.6E-09 52.7 4.5 55 156-210 24-78 (78)
7 1z00_B DNA repair endonuclease 97.5 3.4E-05 1.2E-09 56.5 1.8 54 157-212 19-73 (84)
8 3c65_A Uvrabc system protein C 96.3 0.0006 2.1E-08 57.9 0.0 93 104-209 132-225 (226)
9 2nrt_A Uvrabc system protein C 96.3 0.0031 1.1E-07 53.5 4.1 90 106-209 129-220 (220)
10 1wcn_A Transcription elongatio 96.2 0.0021 7.1E-08 45.4 2.2 53 158-210 9-62 (70)
11 2owo_A DNA ligase; protein-DNA 95.7 0.0055 1.9E-07 58.8 3.3 58 155-212 509-568 (671)
12 4glx_A DNA ligase; inhibitor, 95.4 0.0075 2.6E-07 57.0 2.9 54 159-212 515-568 (586)
13 3sgi_A DNA ligase; HET: DNA AM 94.9 0.0046 1.6E-07 59.0 0.0 53 160-212 533-585 (615)
14 1dgs_A DNA ligase; AMP complex 94.9 0.012 4E-07 56.5 2.7 78 129-212 484-563 (667)
15 2i1q_A DNA repair and recombin 94.2 0.025 8.6E-07 46.2 2.9 51 158-208 5-56 (322)
16 1u9l_A Transcription elongatio 93.0 0.046 1.6E-06 38.8 2.2 50 157-206 7-57 (70)
17 1vq8_Y 50S ribosomal protein L 91.9 0.03 1E-06 47.5 0.0 54 157-210 16-70 (241)
18 4gfj_A Topoisomerase V; helix- 91.4 0.081 2.8E-06 51.0 2.4 134 63-205 363-516 (685)
19 2zj8_A DNA helicase, putative 91.0 0.26 8.8E-06 44.7 5.1 72 138-209 628-700 (720)
20 3c1y_A DNA integrity scanning 91.0 0.074 2.5E-06 48.4 1.6 54 155-208 314-367 (377)
21 1b22_A DNA repair protein RAD5 89.8 0.03 1E-06 43.0 -1.7 53 157-209 24-79 (114)
22 1ixr_A Holliday junction DNA h 89.2 0.27 9.3E-06 40.2 3.4 55 157-211 73-130 (191)
23 1pzn_A RAD51, DNA repair and r 89.0 0.16 5.4E-06 43.3 2.0 51 157-207 36-87 (349)
24 1cuk_A RUVA protein; DNA repai 87.6 0.26 9E-06 40.5 2.3 55 157-211 74-131 (203)
25 2ziu_A MUS81 protein; helix-ha 87.5 0.85 2.9E-05 38.2 5.4 192 18-210 40-306 (311)
26 2z43_A DNA repair and recombin 87.4 0.11 3.7E-06 43.1 0.0 52 157-208 13-65 (324)
27 3uem_A Protein disulfide-isome 82.0 6.5 0.00022 31.8 8.1 92 16-112 105-201 (361)
28 3im1_A Protein SNU246, PRE-mRN 79.6 2.5 8.5E-05 35.6 5.1 66 144-209 145-211 (328)
29 2lja_A Putative thiol-disulfid 78.9 8.4 0.00029 26.5 6.8 42 46-88 32-74 (152)
30 3hcz_A Possible thiol-disulfid 78.4 9.2 0.00031 25.8 6.8 42 46-88 33-75 (148)
31 3kij_A Probable glutathione pe 78.0 5.9 0.0002 29.0 6.1 51 44-95 38-99 (180)
32 1v5w_A DMC1, meiotic recombina 74.0 0.65 2.2E-05 39.1 0.0 53 156-208 25-80 (343)
33 2p5q_A Glutathione peroxidase 73.3 12 0.0004 26.2 6.4 39 46-85 34-73 (170)
34 2pu9_C TRX-F, thioredoxin F-ty 72.7 13 0.00044 24.5 6.2 64 44-113 24-87 (111)
35 2ggt_A SCO1 protein homolog, m 72.5 13 0.00044 25.9 6.4 38 47-85 26-69 (164)
36 2lrn_A Thiol:disulfide interch 72.4 16 0.00056 25.4 7.0 46 46-92 31-77 (152)
37 2q0z_X Protein Pro2281; SEC63, 71.8 5.2 0.00018 33.9 5.1 67 144-210 149-216 (339)
38 1dby_A Chloroplast thioredoxin 71.7 14 0.00048 23.8 6.1 65 44-114 19-83 (107)
39 1faa_A Thioredoxin F; electron 71.4 15 0.0005 24.7 6.3 64 44-113 37-100 (124)
40 3hdc_A Thioredoxin family prot 69.8 7.6 0.00026 27.4 4.8 49 46-95 43-92 (158)
41 3gl3_A Putative thiol:disulfid 69.7 21 0.00071 24.5 6.9 44 47-91 31-75 (152)
42 2p6r_A Afuhel308 helicase; pro 69.3 1.4 4.9E-05 39.8 1.1 63 144-209 620-683 (702)
43 1t00_A Thioredoxin, TRX; redox 69.1 17 0.00057 23.8 6.1 64 44-113 23-86 (112)
44 2b5x_A YKUV protein, TRXY; thi 68.5 7.7 0.00026 26.1 4.4 48 47-95 32-87 (148)
45 2obi_A PHGPX, GPX-4, phospholi 67.8 13 0.00046 27.0 5.9 39 46-85 49-88 (183)
46 2gs3_A PHGPX, GPX-4, phospholi 66.3 16 0.00054 26.9 6.1 39 46-85 51-90 (185)
47 2fwh_A Thiol:disulfide interch 66.3 16 0.00056 25.4 5.9 62 44-111 31-98 (134)
48 1nsw_A Thioredoxin, TRX; therm 65.6 22 0.00074 22.9 6.0 61 47-113 20-80 (105)
49 2p31_A CL683, glutathione pero 65.5 18 0.00063 26.4 6.3 38 47-85 52-90 (181)
50 3fkf_A Thiol-disulfide oxidore 64.3 28 0.00096 23.3 6.6 55 46-101 35-91 (148)
51 3lda_A DNA repair protein RAD5 64.0 4.3 0.00015 35.8 3.0 53 157-209 82-137 (400)
52 3aps_A DNAJ homolog subfamily 64.0 24 0.00081 23.5 6.2 62 44-111 21-82 (122)
53 2dml_A Protein disulfide-isome 63.8 18 0.0006 24.4 5.5 64 44-113 35-98 (130)
54 3gnj_A Thioredoxin domain prot 63.5 24 0.0008 22.8 5.9 62 46-113 24-85 (111)
55 3or5_A Thiol:disulfide interch 62.9 34 0.0012 23.6 7.0 40 47-87 37-77 (165)
56 1nho_A Probable thioredoxin; b 62.6 15 0.0005 22.8 4.6 56 49-110 6-61 (85)
57 3qfa_C Thioredoxin; protein-pr 62.3 22 0.00074 24.1 5.8 62 46-114 33-94 (116)
58 3hxs_A Thioredoxin, TRXP; elec 61.9 35 0.0012 23.3 6.9 62 44-111 51-112 (141)
59 2l5o_A Putative thioredoxin; s 61.6 25 0.00086 24.0 6.1 48 47-95 31-83 (153)
60 4fo5_A Thioredoxin-like protei 61.0 24 0.00082 24.2 5.9 55 46-101 34-89 (143)
61 2lrt_A Uncharacterized protein 60.7 36 0.0012 24.1 6.9 49 46-96 37-86 (152)
62 1jfu_A Thiol:disulfide interch 60.5 44 0.0015 24.0 8.1 62 34-96 39-116 (186)
63 2i4a_A Thioredoxin; acidophIle 60.4 30 0.001 22.0 6.8 64 44-113 20-83 (107)
64 1x5d_A Protein disulfide-isome 60.3 31 0.0011 23.1 6.3 64 44-113 25-92 (133)
65 2duy_A Competence protein come 60.3 3.3 0.00011 27.9 1.3 47 157-209 28-74 (75)
66 3f3q_A Thioredoxin-1; His TAG, 60.0 26 0.00088 23.4 5.8 61 47-114 27-87 (109)
67 2jsy_A Probable thiol peroxida 59.2 13 0.00045 26.4 4.4 49 46-95 46-96 (167)
68 2i1u_A Thioredoxin, TRX, MPT46 58.2 35 0.0012 22.5 6.1 64 44-113 30-93 (121)
69 2ywi_A Hypothetical conserved 58.1 17 0.00057 26.4 4.8 68 28-96 17-108 (196)
70 1zma_A Bacterocin transport ac 57.6 39 0.0013 22.5 6.7 64 46-113 31-96 (118)
71 3lor_A Thiol-disulfide isomera 57.1 20 0.0007 24.7 5.0 48 47-95 33-91 (160)
72 1fb6_A Thioredoxin M; electron 57.0 35 0.0012 21.7 6.2 64 44-113 18-81 (105)
73 2trx_A Thioredoxin; electron t 56.7 37 0.0013 21.9 6.7 64 44-113 20-83 (108)
74 2vup_A Glutathione peroxidase- 56.5 25 0.00086 25.9 5.7 37 47-84 51-88 (190)
75 4evm_A Thioredoxin family prot 56.3 38 0.0013 21.9 6.5 36 47-83 25-60 (138)
76 1xzo_A BSSCO, hypothetical pro 54.7 11 0.00036 26.7 3.2 37 46-85 35-77 (174)
77 2a1i_A DNA excision repair pro 54.5 18 0.00061 29.3 4.9 69 27-99 38-107 (146)
78 4f9z_D Endoplasmic reticulum r 54.5 57 0.0019 25.0 7.6 92 16-112 101-197 (227)
79 2v1m_A Glutathione peroxidase; 53.8 44 0.0015 23.2 6.3 39 46-85 33-72 (169)
80 3fk8_A Disulphide isomerase; A 53.6 49 0.0017 22.4 7.2 64 47-114 32-102 (133)
81 2zix_A Crossover junction endo 53.1 3.4 0.00012 34.7 0.5 147 63-210 105-302 (307)
82 1thx_A Thioredoxin, thioredoxi 52.1 45 0.0015 21.5 7.0 64 44-113 25-88 (115)
83 1w4v_A Thioredoxin, mitochondr 51.6 44 0.0015 22.5 5.9 62 46-113 33-94 (119)
84 3dwv_A Glutathione peroxidase- 51.3 11 0.00039 27.8 3.1 38 47-85 49-87 (187)
85 2vim_A Thioredoxin, TRX; thior 50.8 45 0.0015 21.1 6.0 61 46-113 21-81 (104)
86 1v98_A Thioredoxin; oxidoreduc 50.5 58 0.002 22.5 6.5 69 39-114 46-114 (140)
87 2l57_A Uncharacterized protein 49.3 52 0.0018 22.1 5.9 63 44-112 26-90 (126)
88 2l6c_A Thioredoxin; oxidoreduc 49.0 49 0.0017 22.0 5.8 59 48-113 23-81 (110)
89 1r26_A Thioredoxin; redox-acti 48.8 37 0.0013 23.7 5.3 61 46-113 39-99 (125)
90 2dj0_A Thioredoxin-related tra 48.7 41 0.0014 23.2 5.5 65 42-113 24-96 (137)
91 2va8_A SSO2462, SKI2-type heli 48.7 14 0.00049 33.2 3.8 66 138-206 639-705 (715)
92 3eyt_A Uncharacterized protein 48.1 35 0.0012 23.6 5.0 48 47-95 31-89 (158)
93 1sfl_A 3-dehydroquinate dehydr 47.3 55 0.0019 26.7 6.8 71 60-130 46-126 (238)
94 3fw2_A Thiol-disulfide oxidore 46.7 69 0.0023 22.1 7.2 45 46-91 35-83 (150)
95 2k8s_A Thioredoxin; dimer, str 46.3 33 0.0011 21.9 4.4 57 49-110 5-61 (80)
96 3d6i_A Monothiol glutaredoxin- 46.3 59 0.002 21.2 6.7 63 44-113 21-85 (112)
97 2egz_A 3-dehydroquinate dehydr 45.0 60 0.0021 26.2 6.7 62 63-132 42-110 (219)
98 3erw_A Sporulation thiol-disul 44.6 66 0.0023 21.3 6.5 41 44-85 34-75 (145)
99 3emx_A Thioredoxin; structural 44.3 46 0.0016 23.2 5.2 65 46-114 33-102 (135)
100 3die_A Thioredoxin, TRX; elect 44.2 59 0.002 20.6 6.1 62 46-113 21-82 (106)
101 2l5l_A Thioredoxin; structural 44.1 74 0.0025 22.0 6.2 63 43-111 37-99 (136)
102 3qou_A Protein YBBN; thioredox 43.9 62 0.0021 25.0 6.4 63 43-113 25-89 (287)
103 4f92_B U5 small nuclear ribonu 43.8 25 0.00084 36.8 5.1 97 113-209 1510-1611(1724)
104 3o1n_A 3-dehydroquinate dehydr 43.0 53 0.0018 27.7 6.3 69 61-129 83-159 (276)
105 3ha9_A Uncharacterized thiored 42.8 83 0.0028 21.9 7.7 36 47-84 40-75 (165)
106 1x5e_A Thioredoxin domain cont 42.8 72 0.0025 21.4 5.9 62 47-114 25-87 (126)
107 3raz_A Thioredoxin-related pro 42.7 42 0.0014 23.2 4.8 49 46-95 26-77 (151)
108 2f9s_A Thiol-disulfide oxidore 42.6 77 0.0026 21.7 6.1 49 46-95 28-80 (151)
109 1o73_A Tryparedoxin; electron 42.0 71 0.0024 21.6 5.8 40 47-87 31-72 (144)
110 3cmi_A Peroxiredoxin HYR1; thi 41.5 63 0.0022 23.0 5.7 38 46-85 34-72 (171)
111 2yr1_A 3-dehydroquinate dehydr 41.3 48 0.0016 27.5 5.7 69 61-130 63-140 (257)
112 2r37_A Glutathione peroxidase 41.2 40 0.0014 26.3 4.9 37 47-85 41-78 (207)
113 3uuw_A Putative oxidoreductase 41.0 27 0.00091 28.0 3.9 48 78-130 69-118 (308)
114 2cvb_A Probable thiol-disulfid 40.8 39 0.0013 24.3 4.5 39 46-85 35-73 (188)
115 2oe3_A Thioredoxin-3; electron 40.7 49 0.0017 22.5 4.8 60 47-113 33-92 (114)
116 2hls_A Protein disulfide oxido 40.7 1E+02 0.0034 24.3 7.2 30 46-75 27-57 (243)
117 2voc_A Thioredoxin; electron t 40.5 78 0.0027 20.9 6.4 62 46-113 19-80 (112)
118 3u5r_E Uncharacterized protein 40.4 41 0.0014 25.6 4.8 57 28-85 31-100 (218)
119 2kz3_A Putative uncharacterize 40.1 13 0.00045 27.0 1.8 48 161-208 9-57 (83)
120 2i3s_B Checkpoint serine/threo 39.9 9.5 0.00032 24.8 0.9 25 108-134 12-36 (36)
121 1i5g_A Tryparedoxin II; electr 39.8 80 0.0027 21.5 5.8 40 46-86 30-71 (144)
122 2yxd_A Probable cobalt-precorr 39.6 58 0.002 22.6 5.1 41 58-102 110-150 (183)
123 3p2a_A Thioredoxin 2, putative 39.5 91 0.0031 21.6 6.1 65 43-113 54-118 (148)
124 2f8a_A Glutathione peroxidase 39.3 70 0.0024 24.6 6.0 38 47-85 50-88 (208)
125 1xwb_A Thioredoxin; dimerizati 38.7 73 0.0025 20.1 6.6 62 46-113 22-83 (106)
126 3apq_A DNAJ homolog subfamily 38.7 99 0.0034 23.1 6.6 66 44-115 114-179 (210)
127 3s9f_A Tryparedoxin; thioredox 38.3 77 0.0026 22.9 5.8 44 46-90 50-95 (165)
128 1gh2_A Thioredoxin-like protei 38.2 80 0.0027 20.4 6.2 61 46-113 23-83 (107)
129 1o8x_A Tryparedoxin, TRYX, TXN 37.6 97 0.0033 21.2 7.0 40 46-86 30-71 (146)
130 2hyx_A Protein DIPZ; thioredox 37.5 61 0.0021 27.9 5.9 68 27-95 49-141 (352)
131 2r2j_A Thioredoxin domain-cont 37.5 56 0.0019 27.1 5.5 93 16-112 207-301 (382)
132 3eur_A Uncharacterized protein 37.4 90 0.0031 21.3 5.7 47 47-94 34-84 (142)
133 2e0q_A Thioredoxin; electron t 35.4 80 0.0027 19.6 6.1 59 48-113 20-78 (104)
134 1z6n_A Hypothetical protein PA 35.3 62 0.0021 24.6 5.1 64 44-113 54-119 (167)
135 3sim_A Protein, family 18 chit 35.3 44 0.0015 27.4 4.4 55 25-83 13-82 (275)
136 2f51_A Thioredoxin; electron t 35.0 97 0.0033 21.0 5.6 61 46-113 25-85 (118)
137 2vlu_A Thioredoxin, thioredoxi 35.0 97 0.0033 20.4 5.5 61 46-113 36-96 (122)
138 3ia1_A THIO-disulfide isomeras 35.0 53 0.0018 22.5 4.3 44 49-94 35-82 (154)
139 3ul3_B Thioredoxin, thioredoxi 34.9 1.1E+02 0.0036 20.8 6.8 64 44-113 42-105 (128)
140 3bj5_A Protein disulfide-isome 34.5 1.4E+02 0.0048 22.1 7.1 67 41-110 28-96 (147)
141 2wmm_A Chromosome partition pr 34.1 3 0.0001 34.8 -2.7 68 75-149 90-157 (162)
142 1fo5_A Thioredoxin; disulfide 34.0 81 0.0028 19.2 5.1 56 49-110 7-62 (85)
143 2i3y_A Epididymal secretory gl 34.0 54 0.0019 25.9 4.7 50 34-85 34-96 (215)
144 1ilo_A Conserved hypothetical 33.4 81 0.0028 19.1 6.6 51 51-110 6-56 (77)
145 1lu4_A Soluble secreted antige 33.4 1E+02 0.0034 20.2 5.3 47 47-95 27-76 (136)
146 1xvw_A Hypothetical protein RV 32.9 74 0.0025 22.0 4.8 48 47-95 39-90 (160)
147 1a8l_A Protein disulfide oxido 32.8 1.3E+02 0.0045 22.1 6.4 91 13-112 103-200 (226)
148 3dxb_A Thioredoxin N-terminall 32.5 1E+02 0.0035 23.4 5.8 63 46-114 32-94 (222)
149 1zzo_A RV1677; thioredoxin fol 32.5 68 0.0023 20.9 4.3 47 46-94 27-76 (136)
150 2j23_A Thioredoxin; immune pro 32.5 1.1E+02 0.0039 20.5 5.7 61 47-113 36-97 (121)
151 2rli_A SCO2 protein homolog, m 32.2 1.2E+02 0.0042 21.0 5.8 38 47-85 29-72 (171)
152 2ywm_A Glutaredoxin-like prote 31.3 1.5E+02 0.005 22.1 6.5 86 12-110 104-195 (229)
153 2djk_A PDI, protein disulfide- 31.0 1.1E+02 0.0039 21.3 5.5 66 42-113 21-87 (133)
154 2kuc_A Putative disulphide-iso 30.4 1.2E+02 0.0041 20.2 5.4 61 46-111 29-93 (130)
155 1wou_A Thioredoxin -related pr 29.7 1.3E+02 0.0046 20.4 6.2 65 44-113 24-101 (123)
156 3evn_A Oxidoreductase, GFO/IDH 29.2 51 0.0018 26.8 3.9 48 78-130 70-119 (329)
157 1rxw_A Flap structure-specific 29.2 29 0.00099 29.4 2.5 70 133-214 211-285 (336)
158 3q6o_A Sulfhydryl oxidase 1; p 28.9 1.6E+02 0.0053 22.5 6.4 67 42-113 28-98 (244)
159 1xea_A Oxidoreductase, GFO/IDH 28.6 56 0.0019 26.4 4.0 48 78-130 66-115 (323)
160 2edu_A Kinesin-like protein KI 28.4 26 0.00089 24.8 1.7 44 158-206 42-88 (98)
161 3ztl_A Thioredoxin peroxidase; 28.2 2E+02 0.0069 22.0 7.1 67 33-99 44-127 (222)
162 1qmv_A Human thioredoxin perox 28.1 1.2E+02 0.0039 22.4 5.3 41 56-96 46-89 (197)
163 2ztd_A Holliday junction ATP-d 27.8 34 0.0012 28.4 2.6 53 158-210 90-145 (212)
164 1uul_A Tryparedoxin peroxidase 27.3 1.3E+02 0.0046 22.2 5.6 48 48-96 40-91 (202)
165 1kg2_A A/G-specific adenine gl 26.4 56 0.0019 26.2 3.6 35 173-208 56-93 (225)
166 3idv_A Protein disulfide-isome 25.8 1.6E+02 0.0054 21.7 5.7 62 46-113 34-98 (241)
167 1ti3_A Thioredoxin H, PTTRXH1; 25.7 1.3E+02 0.0046 19.2 6.4 60 47-113 29-88 (113)
168 3rc1_A Sugar 3-ketoreductase; 25.3 66 0.0022 26.6 3.9 48 78-130 92-141 (350)
169 2k6v_A Putative cytochrome C o 24.8 1.7E+02 0.0059 20.1 5.5 38 47-85 38-80 (172)
170 2ekc_A AQ_1548, tryptophan syn 24.6 1.8E+02 0.0061 23.7 6.3 99 61-164 79-182 (262)
171 4hkt_A Inositol 2-dehydrogenas 24.3 73 0.0025 25.7 3.9 48 78-130 66-115 (331)
172 4euy_A Uncharacterized protein 24.1 1.5E+02 0.0051 19.1 5.7 62 46-114 20-81 (105)
173 3e9m_A Oxidoreductase, GFO/IDH 23.4 78 0.0027 25.8 3.9 48 78-130 70-119 (330)
174 3gix_A Thioredoxin-like protei 23.4 2.1E+02 0.0071 20.5 6.3 61 43-109 22-82 (149)
175 2dj3_A Protein disulfide-isome 23.2 1.7E+02 0.0059 19.5 5.6 66 42-113 23-90 (133)
176 1xfl_A Thioredoxin H1; AT3G510 23.1 1.8E+02 0.0063 19.8 6.6 60 47-113 41-100 (124)
177 3f4w_A Putative hexulose 6 pho 22.8 2.2E+02 0.0075 21.3 6.1 14 161-174 165-178 (211)
178 2ju5_A Thioredoxin disulfide i 22.8 1.6E+02 0.0055 20.9 5.2 64 44-111 47-123 (154)
179 2dj1_A Protein disulfide-isome 22.4 1.8E+02 0.0063 19.5 5.2 62 47-114 37-101 (140)
180 2glx_A 1,5-anhydro-D-fructose 22.3 84 0.0029 25.1 3.9 48 78-130 65-114 (332)
181 2ls5_A Uncharacterized protein 27.8 19 0.00064 25.2 0.0 38 47-85 36-76 (159)
182 3arc_X Photosystem II PSBX pro 22.1 26 0.00089 23.2 0.7 15 11-25 3-17 (39)
183 3luc_A Protein argonaute-2; MI 22.1 1.7E+02 0.0058 21.6 5.3 39 86-124 27-70 (138)
184 2o8v_B Thioredoxin 1; disulfid 21.9 1.4E+02 0.0049 20.6 4.6 67 42-114 38-104 (128)
185 3mz0_A Inositol 2-dehydrogenas 21.7 86 0.003 25.5 3.9 48 78-130 69-118 (344)
186 3ohs_X Trans-1,2-dihydrobenzen 21.7 88 0.003 25.3 3.9 48 78-130 69-118 (334)
187 4b21_A Probable DNA-3-methylad 21.5 78 0.0027 26.0 3.6 29 178-207 97-125 (232)
188 2vm1_A Thioredoxin, thioredoxi 21.4 1.7E+02 0.0058 18.8 5.9 57 50-113 34-90 (118)
189 3db2_A Putative NADPH-dependen 21.3 85 0.0029 25.6 3.8 48 78-130 69-118 (354)
190 3cz5_A Two-component response 20.9 2E+02 0.0069 19.4 7.7 113 9-140 12-137 (153)
191 3oqb_A Oxidoreductase; structu 20.7 95 0.0032 25.6 4.0 48 78-130 86-135 (383)
192 1ydw_A AX110P-like protein; st 20.1 1.1E+02 0.0036 25.2 4.1 48 78-130 74-123 (362)
193 3euw_A MYO-inositol dehydrogen 20.1 1.1E+02 0.0039 24.7 4.3 48 78-130 68-117 (344)
194 3o9z_A Lipopolysaccaride biosy 20.0 91 0.0031 25.6 3.7 48 78-130 75-124 (312)
No 1
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=98.41 E-value=2.5e-06 Score=68.33 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=119.5
Q ss_pred HHHHHhcccceeeeeee-CCceeeeCCCceEEEEEeeccCCCch-----HHHHHHHHHHHHhhcceEEEEEecCccc---
Q 042199 18 ISSFLSANSFRLNFVLV-APDFIFNCGGMSISFVFITNWDCHNT-----AVVFSRIKKLKEQFAHFYVVLALPTREQ--- 88 (220)
Q Consensus 18 is~fL~AnS~RLnF~~i-aPDfIfn~gglSvAFifvt~wdc~n~-----a~ifsRV~kLK~qF~~lYVVvtl~t~eq--- 88 (220)
+...|.....+.-+..+ .+||++.. -++++=+.-.+.. .-++.++.+|++.+.+.+++|.......
T Consensus 22 ~~~~l~~~gv~~~~~~L~vgDy~~~~-----~~~VERKs~~Dl~~Si~~~Rl~~Q~~~l~~~~~~~~lliE~d~~~~~~~ 96 (219)
T 2bgw_A 22 VPSILESLGVQVIPKQLPMGDYLVSD-----SIIVERKTSSDFAKSLFDGRLFEQASRLAEHYETVFIIVEGPPVPRRYR 96 (219)
T ss_dssp HHHHHHHTTCEEEEECCSSSSEEEET-----TEEEEEEEHHHHHHHHHHSHHHHHHHHHHHHCSEEEEEEESCSSCGGGT
T ss_pred hHHHHHhCCCEEEEEEcCcCCEEeeC-----CeEEEeCCHHHHHHHhhcCcHHHHHHHHHHhcCCcEEEEEecCcccccc
Confidence 44556666777778777 69999974 1334333211222 3468899999999999998888764331
Q ss_pred --hhhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhccceeEEeeeccCCCCc
Q 042199 89 --NDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDN 166 (220)
Q Consensus 89 --~dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gvcKqQ~i~s~lk~ERkq~VQ~md~flrvvTSIP~id~ 166 (220)
.++....--+.-...|. +.++..+.+-.-+-+..++...-.--...+.- .+..+.+. -.+.+...+++||||..
T Consensus 97 ~~~~~i~~~l~~~~~~~~~-~vi~t~s~~eta~~l~~l~~~~~~~~~~ai~~-~~~~~~~~--~~~~~~~~L~~i~gVg~ 172 (219)
T 2bgw_A 97 GRERSLYAAMAALQLDYGI-RLMNTMDPKGTALVIESLARLSTREGGQRIVI-HKKPRLSD--VREWQLYILQSFPGIGR 172 (219)
T ss_dssp TTHHHHHHHHHHHHHHSCC-EEEEESSHHHHHHHHHHHHHHHSCBCCTTCCC-CCCCCCCH--HHHHHHHHHHTSTTCCH
T ss_pred CCHHHHHHHHHHHHHHCCc-eEEEcCCHHHHHHHHHHHHHhccccccccccc-cccccccc--HHHHHHHHHhcCCCCCH
Confidence 22233333333334444 56777777776665555554220000000000 00000000 01134445889999999
Q ss_pred cChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCc
Q 042199 167 HDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212 (220)
Q Consensus 167 HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~ 212 (220)
..|..|.+..||+++|..|+.+.+.+-.++...+|+.|..||++|.
T Consensus 173 ~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~~~ 218 (219)
T 2bgw_A 173 RTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTPY 218 (219)
T ss_dssp HHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999873
No 2
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=97.96 E-value=2.2e-06 Score=59.07 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=49.3
Q ss_pred eeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhh-HHHHHHHhcCC
Q 042199 157 VVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEK-AEMIVRFFRDP 211 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dk-AE~i~rffrDp 211 (220)
++.+||||....+..|-+-.||+++|.+||.|.+.+- ++... |+.|.+||+.|
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~~ 58 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTS 58 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999888 88889 99999999865
No 3
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=97.85 E-value=1e-05 Score=54.06 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=53.6
Q ss_pred EeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCc
Q 042199 156 RVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212 (220)
Q Consensus 156 rvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~ 212 (220)
..+++||||....|..|.+..||+++|..|+.+.+.+-..+...+|+.|..+|.+|.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~~ 70 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAPY 70 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSCC
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCcc
Confidence 457899999999999999999999999999999999999999999999999998874
No 4
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=97.81 E-value=5.6e-06 Score=59.10 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=57.5
Q ss_pred cceeEEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCcc
Q 042199 151 MDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKL 213 (220)
Q Consensus 151 md~flrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~~ 213 (220)
...++..++.||||..-.|..|.+..||+++|..|+.+.+.+-..+...+|+.|..+|++|..
T Consensus 27 ~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~~~~ 89 (91)
T 2a1j_B 27 VSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFL 89 (91)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhhhhc
Confidence 344666788999999999999999999999999999999999999999999999999998854
No 5
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=97.79 E-value=7e-06 Score=58.08 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=55.5
Q ss_pred eEEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCccc
Q 042199 154 FLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLY 214 (220)
Q Consensus 154 flrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~~y 214 (220)
+...+++||||..-.|..|.+..||+++|..|+.+.+.+-..+...+|+.|..+|.+|-.+
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~~~~ 77 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLK 77 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHhcc
Confidence 3445789999999999999999999999999999999999999999999999999987543
No 6
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=97.66 E-value=4.8e-05 Score=52.74 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=51.4
Q ss_pred EeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcC
Q 042199 156 RVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210 (220)
Q Consensus 156 rvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrD 210 (220)
..++.||||..-.|..|.+..||+++|..|+.+.+.+-..+...+|+.|..+|++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~~ 78 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 78 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHTC
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHhC
Confidence 3478999999999999999999999999999999999999999999999999863
No 7
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=97.48 E-value=3.4e-05 Score=56.53 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=49.1
Q ss_pred eeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhh-HHHHHHHhcCCc
Q 042199 157 VVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEK-AEMIVRFFRDPK 212 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dk-AE~i~rffrDp~ 212 (220)
++.+||||...-+..|-+-.||+++|++||-|.|.+- ++... |+.|.+||+.+.
T Consensus 19 ~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~~~ 73 (84)
T 1z00_B 19 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTSF 73 (84)
T ss_dssp HHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTSBH
T ss_pred HHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHhhh
Confidence 3568999999999999999999999999999999888 88888 999999998643
No 8
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=96.33 E-value=0.0006 Score=57.88 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=15.9
Q ss_pred CcceeeecCCcchh-HHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhccceeEEeeeccCCCCccChhHHHHhhhhHHHH
Q 042199 104 GRPTFVPVQDREMG-FEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAI 182 (220)
Q Consensus 104 g~PtfvpV~d~eMg-fEkivkIAh~~gvcKqQ~i~s~lk~ERkq~VQ~md~flrvvTSIP~id~HDAn~L~QaIGSieAI 182 (220)
+.|.-.|-.++.+- +.+|=.-||.-+.--.+ +.-.|. ..--.++.||||-..-|..|.+..||+++|
T Consensus 132 ~~~~~l~~~s~~l~llq~irDEaHRFAIt~hr------~~r~k~------~~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i 199 (226)
T 3c65_A 132 PDVVPLDRQSQEFYLLQRIQDEVHRFAVMFHR------KTRQKT------MFHSVLDDIPGVGEKRKKALLNYFGSVKKM 199 (226)
T ss_dssp TEECCCCTTSHHHHHHHHHHHHHHHHTTC---------------------------------------------------
T ss_pred CceEecCCCCHHHhhhhhccchhhhhhhhccc------cccccc------cccccccccCCCCHHHHHHHHHHhCCHHHH
Confidence 45677777776643 34555556644432222 111122 223457999999999999999999999999
Q ss_pred HhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 183 AKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 183 akaSke~IlenTDLS~dkAE~i~rffr 209 (220)
.+||.|.+.+- +++...|+.|..||+
T Consensus 200 ~~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 200 KEATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp ---------------------------
T ss_pred HhCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 99999999999 999999999999985
No 9
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=96.27 E-value=0.0031 Score=53.48 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=65.0
Q ss_pred ceeeecCCcchh-HHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhccceeEEeeeccCCCCccChhHHHHhhhhHHHHHh
Q 042199 106 PTFVPVQDREMG-FEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAK 184 (220)
Q Consensus 106 PtfvpV~d~eMg-fEkivkIAh~~gvcKqQ~i~s~lk~ERkq~VQ~md~flrvvTSIP~id~HDAn~L~QaIGSieAIak 184 (220)
|.-.|-.++.+- +.+|=.-||.-+.--.+ +.-.|...+ -.+.+||||-..-|..|.+..||+++|.+
T Consensus 129 ~~~l~~~s~~l~llq~iRDEaHRFAIt~hr------~~R~k~~~~------s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 129 EIHLPHDHPVLRLLVQIRDETHRFAVSYHR------KRREKESLR------SVLDNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp EECCCTTCHHHHHHHHHHHHHHHHHHGGGH------HHHHHHHHH------HHHTTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred eeecCCCCHHHHhhhhhcchhhhccccccc------ccccccccc------ccccCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 777777777654 34555556644432222 111122222 24689999999999999999999999999
Q ss_pred hhhhhhhhccCCCh-hhHHHHHHHhc
Q 042199 185 ASKTYILENTDLSA-EKAEMIVRFFR 209 (220)
Q Consensus 185 aSke~IlenTDLS~-dkAE~i~rffr 209 (220)
||.|.+.+- ++. ..|+.|..||.
T Consensus 197 As~EeL~~V--IG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 197 ASLEEIARV--IGSTEIARRVLDILG 220 (220)
T ss_dssp SCHHHHHHH--HTCHHHHHHHHHHC-
T ss_pred CCHHHHHHH--hChHHHHHHHHHHhC
Confidence 999998877 888 99999999984
No 10
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=96.20 E-value=0.0021 Score=45.45 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=46.9
Q ss_pred eeccCCCCccChhHHHH-hhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcC
Q 042199 158 VTSIPLIDNHDANALNQ-AIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210 (220)
Q Consensus 158 vTSIP~id~HDAn~L~Q-aIGSieAIakaSke~IlenTDLS~dkAE~i~rffrD 210 (220)
+..+|||+.+|+..|.. +|-++|.+|-++++.+++-+++|.+||+.|..=-|.
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 45799999999999985 699999999999999999999999999998754443
No 11
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.70 E-value=0.0055 Score=58.80 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=53.8
Q ss_pred EEeee--ccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCc
Q 042199 155 LRVVT--SIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212 (220)
Q Consensus 155 lrvvT--SIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~ 212 (220)
-|++. +||||-...|..|++..||+++|.+||.+.+.+-.++....|+.|..||++|.
T Consensus 509 ~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEES 568 (671)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hheehhhcccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 35554 89999999999999999999999999999999999999999999999999875
No 12
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=95.36 E-value=0.0075 Score=56.97 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=51.4
Q ss_pred eccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCc
Q 042199 159 TSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212 (220)
Q Consensus 159 TSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~ 212 (220)
-.||++-..-|..|++..||++++..|+.|++.+--+.-...|+.|+.||+||.
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~ 568 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEES 568 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHH
Confidence 368999999999999999999999999999999999999999999999999974
No 13
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=94.88 E-value=0.0046 Score=58.97 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred ccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCc
Q 042199 160 SIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK 212 (220)
Q Consensus 160 SIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~ 212 (220)
+||||-..-|..|++..||+++|..||.|.+.+-.++....|+.|..||++|.
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~ 585 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDW 585 (615)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHH
Confidence 69999999999999999999999999999999999999999999999999985
No 14
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.86 E-value=0.012 Score=56.54 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=62.5
Q ss_pred hhhhhhhhHHHHHHHHHhhhhccceeEEeee--ccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHH
Q 042199 129 GVCKRQDAISKLKAERRRAVQTMDVFLRVVT--SIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVR 206 (220)
Q Consensus 129 gvcKqQ~i~s~lk~ERkq~VQ~md~flrvvT--SIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~r 206 (220)
|.=+.+.+...+..-|++ . +.|++. .|||+-..-|..|++..||+++|.+||.+.+.+-.++....|+.|..
T Consensus 484 G~Ksa~nLl~aIe~sk~~---~---l~R~L~alGI~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~I~GIG~~~A~sI~~ 557 (667)
T 1dgs_A 484 GEKSAQNLLRQIEESKHR---G---LERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILE 557 (667)
T ss_dssp CSTTHHHHHHHHHHGGGC---C---HHHHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhcC---c---HHHhhHhhccCCccHHHHHHHHHHcCCHHHHHhCCHHHHHhccCcCHHHHHHHHH
Confidence 444455555555443332 1 345554 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCc
Q 042199 207 FFRDPK 212 (220)
Q Consensus 207 ffrDp~ 212 (220)
||++|.
T Consensus 558 ff~~~~ 563 (667)
T 1dgs_A 558 TLKDPA 563 (667)
T ss_dssp HHHCHH
T ss_pred HHhhHH
Confidence 999874
No 15
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.24 E-value=0.025 Score=46.22 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=45.6
Q ss_pred eeccCCCCccChhHHH-HhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHh
Q 042199 158 VTSIPLIDNHDANALN-QAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFF 208 (220)
Q Consensus 158 vTSIP~id~HDAn~L~-QaIGSieAIakaSke~IlenTDLS~dkAE~i~rff 208 (220)
+.++|||+.++++.|. .+|-++|+++.+++..+.+.+++|.++|+.+..--
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a 56 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGA 56 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHH
Confidence 6789999999999995 56889999999999999999999999998876543
No 16
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=93.03 E-value=0.046 Score=38.83 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=44.7
Q ss_pred eeeccCCCCccChhHHHH-hhhhHHHHHhhhhhhhhhccCCChhhHHHHHH
Q 042199 157 VVTSIPLIDNHDANALNQ-AIGSIEAIAKASKTYILENTDLSAEKAEMIVR 206 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~Q-aIGSieAIakaSke~IlenTDLS~dkAE~i~r 206 (220)
....++|||--||+.|.+ ++.|+|+||-++++.+++=..+|-+||+.|..
T Consensus 7 ~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~ 57 (70)
T 1u9l_A 7 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (70)
T ss_dssp HHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHH
Confidence 345678999999999976 69999999999999999999999999998864
No 17
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=91.87 E-value=0.03 Score=47.50 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred eeeccCCCCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcC
Q 042199 157 VVTSIPLIDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~rffrD 210 (220)
.+++||||..-.|..|.++ ++|+++|+.|+.+.+.+-..++..+||.|...+.+
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp -------------------------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5788999999999999997 99999999999999999999999999999877753
No 18
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=91.42 E-value=0.081 Score=51.02 Aligned_cols=134 Identities=19% Similarity=0.170 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcceEEEEEecCccchhhHH---------HhH-----hhhccccCcceeeecCCcchhHHHHHHHHHhh
Q 042199 63 VFSRIKKLKEQFAHFYVVLALPTREQNDSFV---------RSY-----FKYGMELGRPTFVPVQDREMGFEKIIKIAHSR 128 (220)
Q Consensus 63 ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~---------~sY-----Fk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~ 128 (220)
+|.-+..|++.|.+-.+++.-...+--+-|. +-- =++-.+.|.+ +---|++..+|..-
T Consensus 363 LFdQaerLarhYerPVLLIEGDLeEIe~LYteR~IhPNAIRGAveiqLASLAvkfG~g--------~eTAe~L~~~agr~ 434 (685)
T 4gfj_A 363 SPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVG--------RKTAERLLRAFGNP 434 (685)
T ss_dssp CHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSTTCC--------HHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHhcCCCEEEEEeccHHhhhhhccCCCCHHHHhhhHhhhhhhhhhhcCCc--------hHHHHHHHHHhcch
Confidence 5778888998888887777643221111111 100 1122244554 22234555555554
Q ss_pred hhhhhh---hhHHHHHH-HH--HhhhhccceeEEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHH
Q 042199 129 GVCKRQ---DAISKLKA-ER--RRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAE 202 (220)
Q Consensus 129 gvcKqQ---~i~s~lk~-ER--kq~VQ~md~flrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE 202 (220)
++-||- .=.+||+. .| ++.+-..+-=..+|||||||+---|..|-...||+++++.|+-+.+.| ..++..+|.
T Consensus 435 l~leqi~rdrEvgkL~SVpGikek~sktL~eqeamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRe-dGIGekqar 513 (685)
T 4gfj_A 435 ERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE-DGLTDAQIR 513 (685)
T ss_dssp HHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHH-TTCCHHHHH
T ss_pred hhhhhhhhhhhhhcccccccchhhhhcccccceeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHH-ccccHHHHH
Confidence 444441 11222221 11 101101111167899999999999999999999999999999999988 777777776
Q ss_pred HHH
Q 042199 203 MIV 205 (220)
Q Consensus 203 ~i~ 205 (220)
.|.
T Consensus 514 rI~ 516 (685)
T 4gfj_A 514 ELK 516 (685)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.00 E-value=0.26 Score=44.73 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhccceeEEeeeccCCCCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 138 SKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 138 s~lk~ERkq~VQ~md~flrvvTSIP~id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~rffr 209 (220)
..|..=++++.||+-.-+--+..||||...-|..|.++ |-|+++|++|+.+.+.+--.++-.-++.+.++++
T Consensus 628 ~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 628 DYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp HHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 44554578888888777777889999999999999987 9999999999999999887788888888988886
No 20
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=90.96 E-value=0.074 Score=48.43 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=50.4
Q ss_pred EEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHh
Q 042199 155 LRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFF 208 (220)
Q Consensus 155 lrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rff 208 (220)
.|++.+||+|....|..|..-.||+++|-.||.|...+=-.+...+|+.|.+-+
T Consensus 314 yRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL 367 (377)
T 3c1y_A 314 YRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESI 367 (377)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999987644
No 21
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=89.80 E-value=0.03 Score=42.97 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=48.1
Q ss_pred eeeccC--CCCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 157 VVTSIP--LIDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 157 vvTSIP--~id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~rffr 209 (220)
.|..+| ||..-|+..|..| +-++|+||.|+++.+.+-..+|.+||+.|..--|
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 788888 9999999999875 9999999999999999999999999999876543
No 22
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=89.23 E-value=0.27 Score=40.17 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=51.7
Q ss_pred eeeccCCCCccChhHHHHhhhh---HHHHHhhhhhhhhhccCCChhhHHHHHHHhcCC
Q 042199 157 VVTSIPLIDNHDANALNQAIGS---IEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~QaIGS---ieAIakaSke~IlenTDLS~dkAE~i~rffrDp 211 (220)
.+.|||||-.-=|-+|....|+ ++||..++.+.+.+-..+....||.|...++|.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999 999999999999999999999999999999875
No 23
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.04 E-value=0.16 Score=43.28 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=45.9
Q ss_pred eeeccCCCCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHHH
Q 042199 157 VVTSIPLIDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVRF 207 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~rf 207 (220)
.+..+|||...|++.|..| +-++|+++.++++.+.+.+++|.++|+.+.+-
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~ 87 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQA 87 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHH
Confidence 5888999999999999764 88999999999999999999999999877654
No 24
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.55 E-value=0.26 Score=40.52 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=51.0
Q ss_pred eeeccCCCCccChhHHHHhhhh---HHHHHhhhhhhhhhccCCChhhHHHHHHHhcCC
Q 042199 157 VVTSIPLIDNHDANALNQAIGS---IEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~QaIGS---ieAIakaSke~IlenTDLS~dkAE~i~rffrDp 211 (220)
.+.|||||-.-=|-+|-...|+ ++||..++.+.+.+-..+....||.|...++|.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 4667999999999999999999 999999999999999999999999999888763
No 25
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=87.49 E-value=0.85 Score=38.16 Aligned_cols=192 Identities=11% Similarity=0.128 Sum_probs=113.9
Q ss_pred HHHHHhcccceeeeeeeC-Cceee--eCC--------------CceEEEEEeeccCCCchH-----HHHHHHHHHHHh-h
Q 042199 18 ISSFLSANSFRLNFVLVA-PDFIF--NCG--------------GMSISFVFITNWDCHNTA-----VVFSRIKKLKEQ-F 74 (220)
Q Consensus 18 is~fL~AnS~RLnF~~ia-PDfIf--n~g--------------glSvAFifvt~wdc~n~a-----~ifsRV~kLK~q-F 74 (220)
+...|.......-+..+. .|+|+ .+- .+-.-+|++=+=-.+... -++.-+.+||+. |
T Consensus 40 ~~~~l~~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~~~~~~~~e~vl~~~VERK~~~Dl~~Si~dgR~~~Q~~rl~~~g~ 119 (311)
T 2ziu_A 40 LVKELQRNSVTFDVRKLNVGDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRMDDLCGSIIDGRFREQKFRLKRCGL 119 (311)
T ss_dssp HHHHHHTTTCCEECCCCSSCSEEEEEEECCCCCTTCSSCCCCCEEEEEEEEEEEEHHHHHHHHHHTCHHHHHHHHHTTSC
T ss_pred HHHHHHHCCCCeEEEecCccCEEEEEecCCCccccccccccCceeeeeeEeEeccHHHHHHHHhcchHHHHHHHHHhCCC
Confidence 445566666655555553 79983 321 111224443221112223 357778889988 9
Q ss_pred cceEEEEEecCcc------chhhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhh-hhhhhhHH---------
Q 042199 75 AHFYVVLALPTRE------QNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGV-CKRQDAIS--------- 138 (220)
Q Consensus 75 ~~lYVVvtl~t~e------q~dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gv-cKqQ~i~s--------- 138 (220)
.+.+++|.-.... ..++....-...-...|. ..+...|++-.-+-+..++..... +|.+.+..
T Consensus 120 ~~~~ylIE~~~~~~~~~~~~~~~i~~aL~~l~v~~g~-~Vi~t~s~~eTa~~l~~lt~~i~~~y~~~~l~~~p~~~~~~~ 198 (311)
T 2ziu_A 120 RKPIYLVEECGSAAAHLSIPESTLQQAIVNTQVVDGF-FVKRVQDAKESAAYLTIMTRYLQKLYQNCTLFCRSRELEGDG 198 (311)
T ss_dssp SEEEEEEESCSSSHHHHSSCHHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHHHHHHHHTTTTCCBCCC--------
T ss_pred CCeEEEEecCCccccccCCCHHHHHHHHHHHhhhcCe-EEEEeCCHHHHHHHHHHHHHHHHHHhccccccccCcchhccc
Confidence 9988888765331 012333333333334444 467788888777777777765442 22221100
Q ss_pred --HH-----------------H--HHHHhhhhccceeEEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhh--------
Q 042199 139 --KL-----------------K--AERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTY-------- 189 (220)
Q Consensus 139 --~l-----------------k--~ERkq~VQ~md~flrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~-------- 189 (220)
.. . .......---|.|++.+.+|||+...-|.++.+..+|+..+.+|.++.
T Consensus 199 ~~~~~~~~~~~~~~~~~f~~f~~~~~k~~~~t~~e~~~~mL~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~ 278 (311)
T 2ziu_A 199 EAESEKMVANLSCSLMAFTEFNYGAIKNKCQTVREVFARQLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEK 278 (311)
T ss_dssp --------CCSCSCCEEHHHHHHHHHHHTCCBHHHHHHHHHTTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSSHHHHTT
T ss_pred cccccccccCcccccccHHHHHHhcccccCCcHHHHHHHHHHhccCCCHHHHHHHHHHCCCHHHHHHHHHhcCCHHHHHH
Confidence 00 0 000111122457999999999999999999999999999999998763
Q ss_pred hhhccC-------CChhhHHHHHHHhcC
Q 042199 190 ILENTD-------LSAEKAEMIVRFFRD 210 (220)
Q Consensus 190 IlenTD-------LS~dkAE~i~rffrD 210 (220)
.|.|.. +..+-++.|.+||..
T Consensus 279 lL~~i~~g~~~r~IG~~lS~kI~~~f~~ 306 (311)
T 2ziu_A 279 LLSSVKYGKLKRNLGPALSRTIYQLYCT 306 (311)
T ss_dssp TTTTCEETTTTEECHHHHHHHHHHHHHC
T ss_pred HHHhcccCCCCCCcCHHHHHHHHHHhcc
Confidence 455543 556678889999974
No 26
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.45 E-value=0.11 Score=43.10 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred eeeccCCCCccChhHHH-HhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHh
Q 042199 157 VVTSIPLIDNHDANALN-QAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFF 208 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~-QaIGSieAIakaSke~IlenTDLS~dkAE~i~rff 208 (220)
-+.++|||+-.|++.|. .++-++|+++.+++..+++.+++|.++|+.+.+--
T Consensus 13 ~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~ 65 (324)
T 2z43_A 13 TINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 (324)
T ss_dssp -----------------------------------------------------
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHH
Confidence 57889999999999995 56889999999999999999999999998876543
No 27
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=82.03 E-value=6.5 Score=31.81 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=58.6
Q ss_pred HHHHHHHhcccceeeeeeeCCce---eeeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCcc-chhh
Q 042199 16 NFISSFLSANSFRLNFVLVAPDF---IFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTRE-QNDS 91 (220)
Q Consensus 16 nfis~fL~AnS~RLnF~~iaPDf---Ifn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~e-q~ds 91 (220)
.-|..|+..++..| +..+.++- ++..+.-.+...|...| |..+..+..+++++-.+|+.-..++.+...+ ++..
T Consensus 105 ~~i~~fi~~~~~p~-v~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~ 182 (361)
T 3uem_A 105 ENLLDFIKHNQLPL-VIEFTEQTAPKIFGGEIKTHILLFLPKS-VSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQR 182 (361)
T ss_dssp HHHHHHHHHHSSCS-EEECSTTTHHHHHSCSCCEEEEEECCSS-SSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHH
T ss_pred HHHHHHHHHcCCCc-ceecCcccHHHHhcCCCCcEEEEEEeCC-chhHHHHHHHHHHHHHHccCceEEEEecCChHHHHH
Confidence 34677888888665 44555542 44444444556677776 6667777788888888888656666666653 4555
Q ss_pred HHHhHhhhcccc-CcceeeecC
Q 042199 92 FVRSYFKYGMEL-GRPTFVPVQ 112 (220)
Q Consensus 92 F~~sYFk~gm~~-g~PtfvpV~ 112 (220)
..+ .||+.. +.|+++=..
T Consensus 183 ~~~---~fgi~~~~~P~~~~~~ 201 (361)
T 3uem_A 183 ILE---FFGLKKEECPAVRLIT 201 (361)
T ss_dssp HHH---HTTCCTTTCSEEEEEE
T ss_pred HHH---HcCCCccCCccEEEEE
Confidence 554 257763 588886544
No 28
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=79.64 E-value=2.5 Score=35.61 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=53.2
Q ss_pred HHhhhhccceeEEeeeccCCCCccChhHHHH-hhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 144 RRRAVQTMDVFLRVVTSIPLIDNHDANALNQ-AIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 144 Rkq~VQ~md~flrvvTSIP~id~HDAn~L~Q-aIGSieAIakaSke~IlenTDLS~dkAE~i~rffr 209 (220)
.+.++|++--..--+..+|||+..-+..|.+ +|-|++.++.++.+.+-+-..++...++.|.++.+
T Consensus 145 ~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 145 AQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVN 211 (328)
T ss_dssp HHHHHHTSCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHH
Confidence 5678888755555678999999988888865 57799999999888887767888888888888765
No 29
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=78.89 E-value=8.4 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=28.4
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCccc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTREQ 88 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~eq 88 (220)
-+-..|.+.| |..+......+++|..+++.- +.++.+...+.
T Consensus 32 ~~lv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~ 74 (152)
T 2lja_A 32 YIYIDVWATW-CGPCRGELPALKELEEKYAGKDIHFVSLSCDKN 74 (152)
T ss_dssp EEEEEECCSS-CCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSC
T ss_pred EEEEEEECCc-CHhHHHHhHHHHHHHHHhccCCeEEEEEEccCc
Confidence 3445555666 888888888888888888764 55666654443
No 30
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=78.39 E-value=9.2 Score=25.83 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=26.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCccc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTREQ 88 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~eq 88 (220)
-+-..|.+.| |..+......+++|..+|+.- +.+|.++..+.
T Consensus 33 ~vll~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~ 75 (148)
T 3hcz_A 33 YTILFFWDSQ-CGHCQQETPKLYDWWLKNRAKGIQVYAANIERK 75 (148)
T ss_dssp EEEEEEECGG-GCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSS
T ss_pred EEEEEEECCC-CccHHHHHHHHHHHHHHhccCCEEEEEEEecCC
Confidence 3555566777 665666666677788888765 66666665433
No 31
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=78.00 E-value=5.9 Score=29.02 Aligned_cols=51 Identities=27% Similarity=0.452 Sum_probs=37.2
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEec----------CccchhhHHHh
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALP----------TREQNDSFVRS 95 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~----------t~eq~dsF~~s 95 (220)
|=-|-..|...| |..+...+..+++|..+|+.- .+||.++ +.++...|.+.
T Consensus 38 Gk~vlv~F~atw-C~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~ 99 (180)
T 3kij_A 38 GKVSLVVNVASD-CQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK 99 (180)
T ss_dssp TSEEEEEEECSS-STTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred CCEEEEEEEecC-CCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence 334555566677 889988899999999999874 6777776 55666666665
No 32
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.03 E-value=0.65 Score=39.06 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred EeeeccC--CCCccChhHHHH-hhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHh
Q 042199 156 RVVTSIP--LIDNHDANALNQ-AIGSIEAIAKASKTYILENTDLSAEKAEMIVRFF 208 (220)
Q Consensus 156 rvvTSIP--~id~HDAn~L~Q-aIGSieAIakaSke~IlenTDLS~dkAE~i~rff 208 (220)
.-+.++| ||.-.|++.|.. ++-++|.++.+++..+++.+++|.++|+.+.+--
T Consensus 25 ~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a 80 (343)
T 1v5w_A 25 QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAA 80 (343)
T ss_dssp --------------------------------------------------------
T ss_pred CcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHH
Confidence 3578888 999999999965 5899999999999999999999999988876543
No 33
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=73.27 E-value=12 Score=26.24 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=28.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
-+-..|...| |..+......+++|..+|+.- ..||.++.
T Consensus 34 ~vll~f~a~~-C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~ 73 (170)
T 2p5q_A 34 VLLIVNVASK-CGMTNSNYAEMNQLYEKYKDQGLEILAFPC 73 (170)
T ss_dssp EEEEEEECSS-STTHHHHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEEEecc-CCccHHHHHHHHHHHHHhccCCEEEEEEEC
Confidence 3455566666 888888888888999999865 67777764
No 34
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=72.74 E-value=13 Score=24.50 Aligned_cols=64 Identities=20% Similarity=0.487 Sum_probs=39.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+......+++|..++++ ..++.+...+++..+.+.| |. -|-||++=..+
T Consensus 24 ~~~vlv~f~a~w-C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~---~v-~~~Pt~~~~~~ 87 (111)
T 2pu9_C 24 DKPVVLDMFTQW-CGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKEL---GI-RVVPTFKILKE 87 (111)
T ss_dssp TSCEEEEEECTT-CHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHH---CC-SBSSEEEEESS
T ss_pred CCEEEEEEECCc-CHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHc---CC-CeeeEEEEEeC
Confidence 434555666777 66666666666777778877 4566666654455555544 43 46888765444
No 35
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=72.52 E-value=13 Score=25.87 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=24.7
Q ss_pred EEEEEeeccCCCc-hHHHHHHHHHHHHhhcc-----eEEEEEecC
Q 042199 47 ISFVFITNWDCHN-TAVVFSRIKKLKEQFAH-----FYVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n-~a~ifsRV~kLK~qF~~-----lYVVvtl~t 85 (220)
+-..|...| |.. +......+++|..+|+. =..||.++.
T Consensus 26 vll~f~~~~-C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~ 69 (164)
T 2ggt_A 26 LLIYFGFTH-CPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISI 69 (164)
T ss_dssp EEEEEECTT-CSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEES
T ss_pred EEEEEEeCC-CCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEe
Confidence 344455555 776 77778888888888863 345566654
No 36
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=72.38 E-value=16 Score=25.39 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=31.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCccchhhH
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTREQNDSF 92 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~eq~dsF 92 (220)
-+-..|...| |..+......+++|..+|+.- ..|+.++..+..+..
T Consensus 31 ~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~ 77 (152)
T 2lrn_A 31 YVLVDFWFAG-CSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDW 77 (152)
T ss_dssp EEEEEEECTT-CTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHH
T ss_pred EEEEEEECCC-ChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHH
Confidence 3555666777 888888888899999998764 566666654433333
No 37
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=71.84 E-value=5.2 Score=33.86 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=53.3
Q ss_pred HHhhhhccceeEEeeeccCCCCccChhHHHH-hhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcC
Q 042199 144 RRRAVQTMDVFLRVVTSIPLIDNHDANALNQ-AIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210 (220)
Q Consensus 144 Rkq~VQ~md~flrvvTSIP~id~HDAn~L~Q-aIGSieAIakaSke~IlenTDLS~dkAE~i~rffrD 210 (220)
.+.++|++-...--+..+|||+..-+..|.. .|-|++.+..++.+.+-+=..++....+.|.++.+.
T Consensus 149 ~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 149 AQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 216 (339)
T ss_dssp HHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5778888877777788999999988888864 467999999888776655556888888888888764
No 38
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=71.72 E-value=14 Score=23.85 Aligned_cols=65 Identities=15% Similarity=0.378 Sum_probs=39.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
|-.+-..|-+.| |..+......++++..+++.-..++.+...+. ..+.+. ||. -|-||++=..+.
T Consensus 19 ~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~-~~~~~~---~~v-~~~Pt~~~~~~G 83 (107)
T 1dby_A 19 SVPVLVDFWAPW-CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES-PNVASE---YGI-RSIPTIMVFKGG 83 (107)
T ss_dssp SSCEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC-HHHHHH---HTC-CSSCEEEEESSS
T ss_pred CCcEEEEEECCC-CHhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHH---CCC-CcCCEEEEEeCC
Confidence 333444555666 88777777777888888875455555654433 334443 454 378998765443
No 39
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=71.39 E-value=15 Score=24.74 Aligned_cols=64 Identities=20% Similarity=0.477 Sum_probs=39.3
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+...-..++++..++++ ..++.+...+++..+.+. ||. -|-||++=..+
T Consensus 37 ~~~~vv~f~a~w-C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~---~~v-~~~Pt~~~~~~ 100 (124)
T 1faa_A 37 DKPVVLDMFTQW-CGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKE---LGI-RVVPTFKILKE 100 (124)
T ss_dssp TSCEEEEEECTT-CHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHH---HCC-SSSSEEEEEET
T ss_pred CCEEEEEEECCc-CHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHH---cCC-CeeeEEEEEeC
Confidence 434555566777 66666666667777888877 455666655444555554 343 47899775444
No 40
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=69.83 E-value=7.6 Score=27.39 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=37.3
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhc-ceEEEEEecCccchhhHHHh
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFA-HFYVVLALPTREQNDSFVRS 95 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~-~lYVVvtl~t~eq~dsF~~s 95 (220)
-+-..|...| |..+......+++|..+|+ .=.++|.+...++...|.+.
T Consensus 43 ~vll~F~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~ 92 (158)
T 3hdc_A 43 IVLVNFWASW-CPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRR 92 (158)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGG
T ss_pred EEEEEEECCc-CHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHH
Confidence 4556677777 8888888999999999997 34677778777777776664
No 41
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=69.66 E-value=21 Score=24.46 Aligned_cols=44 Identities=14% Similarity=0.432 Sum_probs=31.0
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCccchhh
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTREQNDS 91 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~eq~ds 91 (220)
+-..|...| |..+......+++|..+|+.- ..+|.++...+.+.
T Consensus 31 vll~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~ 75 (152)
T 3gl3_A 31 VYLDFWASW-CGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGD 75 (152)
T ss_dssp EEEEEECTT-CTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHH
T ss_pred EEEEEECCc-CHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHH
Confidence 344455666 888888888999999999875 66666665544333
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=69.29 E-value=1.4 Score=39.77 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=51.7
Q ss_pred HHhhhhccceeEEeeeccCCCCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 144 RRRAVQTMDVFLRVVTSIPLIDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 144 Rkq~VQ~md~flrvvTSIP~id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~rffr 209 (220)
++++.||+-.-+--+..|||+...-|..|.++ |-|+++|+.++ +.+.+-.. ..-|+.|.+..+
T Consensus 620 ~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~~~~ 683 (702)
T 2p6r_A 620 TERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG--RGIAERVVEGIS 683 (702)
T ss_dssp HHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC--HHHHHHHHHHHH
T ss_pred HHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC--hhHHHHHHHhcC
Confidence 56777777766667789999999999999986 99999999999 87776544 667888888776
No 43
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=69.06 E-value=17 Score=23.79 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=38.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+......++++..+++.-..++.+...+. ..+.+. ||.. |-||++=..+
T Consensus 23 ~~~~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~-~~~~~~---~~v~-~~Pt~~~~~~ 86 (112)
T 1t00_A 23 DKPVLVDFWAAW-CGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN-PGTAAK---YGVM-SIPTLNVYQG 86 (112)
T ss_dssp SSCEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC-HHHHHH---TTCC-SSSEEEEEET
T ss_pred CCeEEEEEECCC-CHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCC-HHHHHh---CCCC-cccEEEEEeC
Confidence 434445566666 77777666677778888854455666655443 334433 3443 7899875443
No 44
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=68.53 E-value=7.7 Score=26.09 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEec--------CccchhhHHHh
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALP--------TREQNDSFVRS 95 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~--------t~eq~dsF~~s 95 (220)
+-..|...| |..+......+++|...|+.-..++.+. +.++...|.+.
T Consensus 32 ~lv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 87 (148)
T 2b5x_A 32 TLIHFWSIS-CHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAE 87 (148)
T ss_dssp EEEEEECTT-CHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHH
T ss_pred EEEEEEcCC-CHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHH
Confidence 445566666 7778777888888888887645566665 45555566554
No 45
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=67.75 E-value=13 Score=27.04 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=28.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
-+-..|...| |..+......+++|..+|+.- ..||.++.
T Consensus 49 ~vll~F~atw-C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~ 88 (183)
T 2obi_A 49 VCIVTNVASQ-CGKTEVNYTQLVDLHARYAECGLRILAFPC 88 (183)
T ss_dssp EEEEEEECSS-STTHHHHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEEeCCC-CCCcHHHHHHHHHHHHHHhcCCeEEEEEEC
Confidence 3555666677 888888888999999999763 56666753
No 46
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=66.31 E-value=16 Score=26.92 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=29.6
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
-+-..|...| |..+......+++|..+|+.- ..||.++.
T Consensus 51 ~vlv~F~atw-C~~C~~~~~~l~~l~~~~~~~~v~vv~is~ 90 (185)
T 2gs3_A 51 VCIVTNVASQ-GGKTEVNYTQLVDLHARYAECGLRILAFPC 90 (185)
T ss_dssp EEEEEEECSS-STTHHHHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEEecCC-CCchHHHHHHHHHHHHHhhcCCeEEEEEEC
Confidence 4455666677 888888888999999999864 67777764
No 47
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=66.31 E-value=16 Score=25.42 Aligned_cols=62 Identities=18% Similarity=0.375 Sum_probs=36.6
Q ss_pred CceEEEEEeeccCCCchHHHHHHH---HHHHHhhcceEEEEEecCcc---chhhHHHhHhhhccccCcceeeec
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRI---KKLKEQFAHFYVVLALPTRE---QNDSFVRSYFKYGMELGRPTFVPV 111 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV---~kLK~qF~~lYVVvtl~t~e---q~dsF~~sYFk~gm~~g~PtfvpV 111 (220)
|-.+-..|-+.| |..+...-..+ .+|...+++ ++++.+...+ +...+.+ +||. .|-||++=+
T Consensus 31 ~k~vlv~F~a~w-C~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~---~~~v-~~~Pt~~~~ 98 (134)
T 2fwh_A 31 GKPVMLDLYADW-CVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLK---HLNV-LGLPTILFF 98 (134)
T ss_dssp TSCEEEEEECTT-CHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHH---HTTC-CSSSEEEEE
T ss_pred CCcEEEEEECCC-CHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHH---HcCC-CCCCEEEEE
Confidence 334555566777 66665554444 677777777 5666666543 2333433 3454 478998866
No 48
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=65.56 E-value=22 Score=22.87 Aligned_cols=61 Identities=18% Similarity=0.389 Sum_probs=37.0
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+-..|-+.| |..+......++++...++.-..++.+...+. ....+ +||. -|-||++=..+
T Consensus 20 ~~v~f~~~~-C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~-~~~~~---~~~v-~~~Pt~~~~~~ 80 (105)
T 1nsw_A 20 VLVDFWAAW-CGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN-PETTS---QFGI-MSIPTLILFKG 80 (105)
T ss_dssp EEEEEECTT-CHHHHHHHHHHHHHHHHSTTTCEEEEEETTTC-HHHHH---HTTC-CSSSEEEEEET
T ss_pred EEEEEECCC-CHHHHHHHHHHHHHHHHhcCCcEEEEEECcCC-HHHHH---HcCC-ccccEEEEEeC
Confidence 444455666 88777777777888888875455555554433 23333 3443 36788876544
No 49
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=65.46 E-value=18 Score=26.45 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=28.8
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
+-..|...| |..+......+++|..+|+.- ..||.++.
T Consensus 52 vlv~F~atw-C~~C~~~~p~l~~l~~~~~~~~v~vv~vs~ 90 (181)
T 2p31_A 52 SLVVNVASE-CGFTDQHYRALQQLQRDLGPHHFNVLAFPC 90 (181)
T ss_dssp EEEEEECSS-STTHHHHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEeccC-CCCcHHHHHHHHHHHHHhhcCCEEEEEEEC
Confidence 455566667 888888888999999999865 66777763
No 50
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=64.29 E-value=28 Score=23.35 Aligned_cols=55 Identities=13% Similarity=0.379 Sum_probs=33.0
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhh-cce-EEEEEecCccchhhHHHhHhhhcc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQF-AHF-YVVLALPTREQNDSFVRSYFKYGM 101 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF-~~l-YVVvtl~t~eq~dsF~~sYFk~gm 101 (220)
-+-..|...| |..+......+++|..+| +.- ..++.++...+.+...+..=++|+
T Consensus 35 ~vll~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~ 91 (148)
T 3fkf_A 35 YLLLNFWASW-CDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTL 91 (148)
T ss_dssp EEEEEEECGG-GCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTC
T ss_pred EEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCC
Confidence 4455566666 666777777888888888 554 566666655443333333333443
No 51
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=64.02 E-value=4.3 Score=35.77 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=44.2
Q ss_pred eeeccCC--CCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 157 VVTSIPL--IDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 157 vvTSIP~--id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~rffr 209 (220)
-+..+++ |..-|+..|..| +-+++.|+.++++.+.+-++||.+||+.|.+--+
T Consensus 82 ~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 82 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp BGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3556665 888889988765 7899999999999999999999999988866543
No 52
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=63.99 E-value=24 Score=23.50 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=35.6
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeec
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPV 111 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV 111 (220)
|-.+-..|-+.| |..+......+++|..+++.-..++.+...+. ..+.+ +||.. |-||++=.
T Consensus 21 ~~~~lv~f~a~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~---~~~v~-~~Pt~~~~ 82 (122)
T 3aps_A 21 KTHWVVDFYAPW-CGPCQNFAPEFELLARMIKGKVRAGKVDCQAY-PQTCQ---KAGIK-AYPSVKLY 82 (122)
T ss_dssp SSCEEEEEECTT-CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTC-HHHHH---HTTCC-SSSEEEEE
T ss_pred CCeEEEEEECCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCC-HHHHH---HcCCC-ccceEEEE
Confidence 334455566777 66655555556667777764355556655443 33333 34543 78998755
No 53
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.83 E-value=18 Score=24.43 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=37.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+......+.+|..++++-..++.+...+ +..+.+. ||. -|-||++=+.+
T Consensus 35 ~~~~lv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~---~~v-~~~Pt~~~~~~ 98 (130)
T 2dml_A 35 DGLWLVEFYAPW-CGHCQRLTPEWKKAATALKDVVKVGAVNADK-HQSLGGQ---YGV-QGFPTIKIFGA 98 (130)
T ss_dssp SSCEEEEEECTT-CSTTGGGHHHHHHHHHHTTTTSEEEEEETTT-CHHHHHH---HTC-CSSSEEEEESS
T ss_pred CCeEEEEEECCC-CHHHHhhCHHHHHHHHHhcCceEEEEEeCCC-CHHHHHH---cCC-CccCEEEEEeC
Confidence 334556667777 5555555555566677777655555565543 3334443 343 37899876654
No 54
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=63.53 E-value=24 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.336 Sum_probs=38.2
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+...-..+.++..+++.-..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 24 ~vlv~f~a~~-C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~---~~v-~~~Pt~~~~~~ 85 (111)
T 3gnj_A 24 ACLVMFSRKN-CHVCQKVTPVLEELRLNYEESFGFYYVDVEE-EKTLFQR---FSL-KGVPQILYFKD 85 (111)
T ss_dssp CEEEEEECSS-CHHHHHHHHHHHHHHHHTTTTSEEEEEETTT-CHHHHHH---TTC-CSSCEEEEEET
T ss_pred EEEEEEeCCC-ChhHHHHHHHHHHHHHHcCCceEEEEEECCc-ChhHHHh---cCC-CcCCEEEEEEC
Confidence 3445566777 8888777777888888888534455555443 3334433 343 37788865544
No 55
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=62.95 E-value=34 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.411 Sum_probs=28.1
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCcc
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTRE 87 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~e 87 (220)
+-..|...| |..+......+++|..+++.- ..+|.+...+
T Consensus 37 vlv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~ 77 (165)
T 3or5_A 37 YIVNFFATW-CPPCRSEIPDMVQVQKTWASRGFTFVGIAVNE 77 (165)
T ss_dssp EEEEEECTT-SHHHHHHHHHHHHHHHHHTTTTEEEEEEECSC
T ss_pred EEEEEEcCc-CHHHHHHHHHHHHHHHHhccCCeEEEEEECCC
Confidence 444455555 888888888889999999865 6666665443
No 56
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=62.55 E-value=15 Score=22.76 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=29.4
Q ss_pred EEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeee
Q 042199 49 FVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 49 Fifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
..|-+.| |..+......++++..+++.-..++.+...++. ...+ +||. -|-||++=
T Consensus 6 v~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~v-~~~Pt~~~ 61 (85)
T 1nho_A 6 EVFTSPT-CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR-EKAI---EYGL-MAVPAIAI 61 (85)
T ss_dssp EEESCSS-SCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG-GGGG---GTCS-SCSSEEEE
T ss_pred EEEECCC-CcchHHHHHHHHHHHHHhcCCeEEEEEECCCCH-HHHH---hCCc-eeeCEEEE
Confidence 3456667 444444444455666666633445555544332 2333 3454 37888875
No 57
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=62.26 E-value=22 Score=24.14 Aligned_cols=62 Identities=15% Similarity=0.343 Sum_probs=40.7
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
.+-..|-+.| |..+......+++|..++++ ..++.+...+. ....+. ||. -|-||++=..+-
T Consensus 33 ~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~-~~l~~~---~~v-~~~Pt~~~~~~G 94 (116)
T 3qfa_C 33 LVVVDFSATW-CGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDC-QDVASE---CEV-KSMPTFQFFKKG 94 (116)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHTTCTT-SEEEEEETTTT-HHHHHH---TTC-CSSSEEEEESSS
T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-CEEEEEECCCC-HHHHHH---cCC-ccccEEEEEeCC
Confidence 3445566777 77777777778888899988 56666665443 334443 343 478998876554
No 58
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=61.86 E-value=35 Score=23.32 Aligned_cols=62 Identities=18% Similarity=0.382 Sum_probs=39.8
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeec
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPV 111 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV 111 (220)
|=.+-..|-+.| |..+......+.+|...++.-..++.+...+. ..+.+. ||. -|-||++=+
T Consensus 51 ~k~vlv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~---~~v-~~~Pt~~~~ 112 (141)
T 3hxs_A 51 DKPAIVDFYADW-CGPCKMVAPILEELSKEYAGKIYIYKVNVDKE-PELARD---FGI-QSIPTIWFV 112 (141)
T ss_dssp SSCEEEEEECTT-CTTHHHHHHHHHHHHHHTTTTCEEEEEETTTC-HHHHHH---TTC-CSSSEEEEE
T ss_pred CCEEEEEEECCC-CHHHHHHHHHHHHHHHHhcCceEEEEEECCCC-HHHHHH---cCC-CCcCEEEEE
Confidence 444555666777 88887777777888888885455566655443 334443 343 378998766
No 59
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=61.58 E-value=25 Score=24.04 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=30.8
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEec----CccchhhHHHh
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALP----TREQNDSFVRS 95 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~----t~eq~dsF~~s 95 (220)
+-..|...| |..+......+++|..+++.- ..|+.+. +.+....|.+.
T Consensus 31 ~lv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 83 (153)
T 2l5o_A 31 TLINFWFPS-CPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKD 83 (153)
T ss_dssp EEEEEECTT-CTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCC-CccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHH
Confidence 444555665 888888888899999998863 4444443 33444455443
No 60
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=61.00 E-value=24 Score=24.24 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=35.6
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcc-eEEEEEecCccchhhHHHhHhhhcc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAH-FYVVLALPTREQNDSFVRSYFKYGM 101 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~-lYVVvtl~t~eq~dsF~~sYFk~gm 101 (220)
-+-..|...| |..+.....++++|..+|+. =..||.++..+..+...+..=++|+
T Consensus 34 ~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 89 (143)
T 4fo5_A 34 YTLLNFWAAY-DAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKL 89 (143)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTC
T ss_pred EEEEEEEcCc-CHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCC
Confidence 3445566666 77788888899999999974 3667777766544443333334444
No 61
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=60.69 E-value=36 Score=24.05 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=33.2
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCccchhhHHHhH
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTREQNDSFVRSY 96 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~eq~dsF~~sY 96 (220)
-+-..|...| |..+......+++|..+|+.- ..||.++..+.. ...+.|
T Consensus 37 ~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~-~~~~~~ 86 (152)
T 2lrt_A 37 VVLIDFTVYN-NAMSAAHNLALRELYNKYASQGFEIYQISLDGDE-HFWKTS 86 (152)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCH-HHHHHH
T ss_pred EEEEEEEcCC-ChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCH-HHHHHH
Confidence 3455555665 777888888888898898775 677777765543 344444
No 62
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=60.53 E-value=44 Score=23.96 Aligned_cols=62 Identities=18% Similarity=0.426 Sum_probs=38.0
Q ss_pred eCCceeeeCC-----------CceEEEEEeeccCCCchHHHHHHHHHHHHhhc-ceEEEEEecCc----cchhhHHHhH
Q 042199 34 VAPDFIFNCG-----------GMSISFVFITNWDCHNTAVVFSRIKKLKEQFA-HFYVVLALPTR----EQNDSFVRSY 96 (220)
Q Consensus 34 iaPDfIfn~g-----------glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~-~lYVVvtl~t~----eq~dsF~~sY 96 (220)
-+|||-+.+. |=-+-..|...| |..+......+++|..+|+ .=..||.++.. ++...|.+.|
T Consensus 39 ~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 116 (186)
T 1jfu_A 39 KLPDLAFEDADGKPKKLSDFRGKTLLVNLWATW-CVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA 116 (186)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEEECTT-CHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHT
T ss_pred cCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCC-CHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHc
Confidence 4678876531 323455566666 8888888888888988887 23445555443 3445565543
No 63
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=60.41 E-value=30 Score=22.04 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=38.5
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|.+.| |..+......++++..+++.-..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 20 ~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~---~~v-~~~Pt~~~~~~ 83 (107)
T 2i4a_A 20 SGLVLVDFWAEW-CGPCKMIGPALGEIGKEFAGKVTVAKVNIDD-NPETPNA---YQV-RSIPTLMLVRD 83 (107)
T ss_dssp SSEEEEEEECTT-CHHHHHHHHHHHHHHHHHTTSEEEEEEETTT-CCHHHHH---TTC-CSSSEEEEEET
T ss_pred CCEEEEEEECCC-ChhHHHHhHHHHHHHHHhCCcEEEEEEECCC-CHHHHHh---cCC-CccCEEEEEeC
Confidence 334445555666 7777777777788888887545555555433 3334443 343 47788776544
No 64
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.34 E-value=31 Score=23.05 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=36.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhc----ceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFA----HFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~----~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+......+++|..+++ .-..++.+...+. ..+.+. ||. -|-||++=+.+
T Consensus 25 ~~~~lv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~---~~v-~~~Pt~~~~~~ 92 (133)
T 1x5d_A 25 EDVWMVEFYAPW-CGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN-QVLASR---YGI-RGFPTIKIFQK 92 (133)
T ss_dssp SSEEEEEEECTT-CHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC-CHHHHH---HTC-CSSSEEEEEET
T ss_pred CCeEEEEEECCC-CHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC-HHHHHh---CCC-CeeCeEEEEeC
Confidence 334555666777 6665555555566666665 3355666655443 334443 343 37888876544
No 65
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=60.25 E-value=3.3 Score=27.93 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=36.5
Q ss_pred eeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhc
Q 042199 157 VVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 157 vvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffr 209 (220)
.+.+||||..--|..+.+.. .-+|.+++++-..++..+++.|..|++
T Consensus 28 ~L~~ipGIG~~~A~~Il~~r------~~~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 28 ELMALPGIGPVLARRIVEGR------PYARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHTC------CCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred HHHhCCCCCHHHHHHHHHHc------ccCCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 35678998887777777765 347888888888899999999987763
No 66
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=60.02 E-value=26 Score=23.40 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=36.7
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
+-..|-+.| |..+......+++|...++++ .++.+...+ +..+.+. ||. -|-||++=..+-
T Consensus 27 vlv~f~a~w-C~~C~~~~p~l~~l~~~~~~~-~~~~vd~~~-~~~l~~~---~~v-~~~Pt~~~~~~G 87 (109)
T 3f3q_A 27 VVVDFYATW-CGPCKMIAPMIEKFSEQYPQA-DFYKLDVDE-LGDVAQK---NEV-SAMPTLLLFKNG 87 (109)
T ss_dssp EEEEEECTT-CHHHHHHHHHHHHHHHHCTTS-EEEEEETTT-CHHHHHH---TTC-CSSSEEEEEETT
T ss_pred EEEEEECCc-CHhHHHHHHHHHHHHHHCCCC-EEEEEECCC-CHHHHHH---cCC-CccCEEEEEECC
Confidence 444566777 777777777778888888773 344454433 3334443 343 377888765443
No 67
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=59.17 E-value=13 Score=26.41 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=34.2
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEec--CccchhhHHHh
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALP--TREQNDSFVRS 95 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~--t~eq~dsF~~s 95 (220)
-+-..|...|.|..+......+++|..+|.++ .||.++ +.+....|.+.
T Consensus 46 ~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~-~vv~is~d~~~~~~~~~~~ 96 (167)
T 2jsy_A 46 VTIISVIPSIDTGVCDAQTRRFNEEAAKLGDV-NVYTISADLPFAQARWCGA 96 (167)
T ss_dssp CEEEEECSCSTTSHHHHTHHHHHHHHHHHSSC-EEEEEECSSGGGTSCCGGG
T ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHcCCC-EEEEEECCCHHHHHHHHHh
Confidence 46677888999999988889999999988554 334443 44444555553
No 68
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=58.21 E-value=35 Score=22.45 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=36.8
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+...-..++++..+++.-..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 30 ~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~---~~i-~~~Pt~~~~~~ 93 (121)
T 2i1u_A 30 NKPVLVDFWATW-CGPCKMVAPVLEEIATERATDLTVAKLDVDT-NPETARN---FQV-VSIPTLILFKD 93 (121)
T ss_dssp SSCEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTT-CHHHHHH---TTC-CSSSEEEEEET
T ss_pred CCcEEEEEECCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-CHHHHHh---cCC-CcCCEEEEEEC
Confidence 444555566666 7777666666777777776434455554433 3334333 343 36788875543
No 69
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=58.09 E-value=17 Score=26.36 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=40.9
Q ss_pred eeeeeeeCCceeee-C------------CCceEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEec---------
Q 042199 28 RLNFVLVAPDFIFN-C------------GGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALP--------- 84 (220)
Q Consensus 28 RLnF~~iaPDfIfn-~------------gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~--------- 84 (220)
.|.--.-+|||-+. + |...+-..|...| |..+......+++|..+|+.- ..||.++
T Consensus 17 ~~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~-C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~ 95 (196)
T 2ywi_A 17 MFPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNH-CPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPE 95 (196)
T ss_dssp CCCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSS-CHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGG
T ss_pred CCCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCC-CccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccc
Confidence 34333457888776 2 2223555666666 777777778888888888753 4444444
Q ss_pred -CccchhhHHHhH
Q 042199 85 -TREQNDSFVRSY 96 (220)
Q Consensus 85 -t~eq~dsF~~sY 96 (220)
+.++...|.+.|
T Consensus 96 d~~~~~~~~~~~~ 108 (196)
T 2ywi_A 96 DSPENMKKVAEEL 108 (196)
T ss_dssp GSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHc
Confidence 345555666544
No 70
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=57.61 E-value=39 Score=22.52 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=33.4
Q ss_pred eEEEEEeecc--CCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNW--DCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~w--dc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| .|....+.+.+ +..++..-.+.+.+....+.+...+-.=+||.. |-||++=..+
T Consensus 31 ~~~v~f~a~wC~~C~~~~p~l~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~-~~Pt~~~~~~ 96 (118)
T 1zma_A 31 TATFFIGRKTCPYCRKFAGTLSG---VVAETKAHIYFINSEEPSQLNDLQAFRSRYGIP-TVPGFVHITD 96 (118)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHH---HHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCC-SSCEEEEEET
T ss_pred eEEEEEECCCCccHHHHHHHHHH---HHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCC-CCCeEEEEEC
Confidence 4556677888 35555566555 444554333444444443333332222344543 7899876544
No 71
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=57.11 E-value=20 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=32.2
Q ss_pred EEEEEeeccCCCchHH-HHHHHHHHHHhhcce-EEEEEec---------CccchhhHHHh
Q 042199 47 ISFVFITNWDCHNTAV-VFSRIKKLKEQFAHF-YVVLALP---------TREQNDSFVRS 95 (220)
Q Consensus 47 vAFifvt~wdc~n~a~-ifsRV~kLK~qF~~l-YVVvtl~---------t~eq~dsF~~s 95 (220)
|-..|... .|..+.. ....+++|..+|+.- ..+|.++ +.+....|.+.
T Consensus 33 vlv~F~a~-~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~ 91 (160)
T 3lor_A 33 VVVEVFQM-LCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDE 91 (160)
T ss_dssp EEEEEECT-TCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHH
T ss_pred EEEEEEcC-CCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHH
Confidence 44445555 4888888 688999999999864 5666665 44555555554
No 72
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=56.99 E-value=35 Score=21.67 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=37.6
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+......++++..+++.-..++.+...+. ..+.+. ||. -|-||++=..+
T Consensus 18 ~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~---~~v-~~~Pt~~~~~~ 81 (105)
T 1fb6_A 18 EVPVMVDFWAPW-CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA-PGIATQ---YNI-RSIPTVLFFKN 81 (105)
T ss_dssp SSCEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC-HHHHHH---TTC-CSSSEEEEEET
T ss_pred CCcEEEEEECCC-ChHHHHHHHHHHHHHHHhcCceEEEEEcCcch-HHHHHh---CCC-CcccEEEEEeC
Confidence 434445555666 77777777777788888875445555554433 334333 343 47888875443
No 73
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=56.68 E-value=37 Score=21.86 Aligned_cols=64 Identities=17% Similarity=0.394 Sum_probs=38.2
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+......++++...++.-..++.+...+. ..+.+. ||. -|-||++=..+
T Consensus 20 ~~~~~v~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~-~~~~~~---~~v-~~~Pt~~~~~~ 83 (108)
T 2trx_A 20 DGAILVDFWAEW-CGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPK---YGI-RGIPTLLLFKN 83 (108)
T ss_dssp SSEEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC-TTHHHH---TTC-CSSSEEEEEET
T ss_pred CCeEEEEEECCC-CHhHHHHHHHHHHHHHHhCCCcEEEEEECCCC-HHHHHH---cCC-cccCEEEEEeC
Confidence 334445566666 77777777777788888874455566654432 334433 343 37788876544
No 74
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=56.49 E-value=25 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=27.0
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEec
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALP 84 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~ 84 (220)
+-..|...| |..+......+++|..+|+.- ..||.++
T Consensus 51 vll~F~atw-C~~C~~~~~~l~~l~~~~~~~~v~vv~vs 88 (190)
T 2vup_A 51 LLIYNVASK-CGYTKGGYETATTLYNKYKSQGFTVLAFP 88 (190)
T ss_dssp EEEEEECSS-STTHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred EEEEEecCC-CCccHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 445555566 888888888899999999764 5566665
No 75
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=56.27 E-value=38 Score=21.92 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=26.4
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEe
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLAL 83 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl 83 (220)
+-..|.+.| |..+......+++|..++..-.++|.+
T Consensus 25 ~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~v~i 60 (138)
T 4evm_A 25 VYLKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTV 60 (138)
T ss_dssp EEEEECCTT-CHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred EEEEEEcCc-CHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 444455565 888888888889998888766666766
No 76
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=54.66 E-value=11 Score=26.65 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=20.8
Q ss_pred eEEEEEeecc---CCCchHHHHHHHHHHHHhhcce---EEEEEecC
Q 042199 46 SISFVFITNW---DCHNTAVVFSRIKKLKEQFAHF---YVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~w---dc~n~a~ifsRV~kLK~qF~~l---YVVvtl~t 85 (220)
-+-..|...| -|....+.++ +|..+|+.. ..||.++.
T Consensus 35 ~vll~f~~~~C~~~C~~~~~~l~---~l~~~~~~~~~~~~vv~is~ 77 (174)
T 1xzo_A 35 VWLADFIFTNCETICPPMTAHMT---DLQKKLKAENIDVRIISFSV 77 (174)
T ss_dssp CEEEEEECSCCSSCCCSHHHHHH---HHHHHHHHTTCCCEEEEEES
T ss_pred EEEEEEEcCCCcchhHHHHHHHH---HHHHHhhhcCCcEEEEEEEe
Confidence 3566677788 3445555554 455555542 45666664
No 77
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=54.51 E-value=18 Score=29.27 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=42.4
Q ss_pred ceeeeeeeCCceeeeCCCceEEEEEee-ccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhh
Q 042199 27 FRLNFVLVAPDFIFNCGGMSISFVFIT-NWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKY 99 (220)
Q Consensus 27 ~RLnF~~iaPDfIfn~gglSvAFifvt-~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~ 99 (220)
-+..|.-|.|||+++.. .+.+|.+ .+..-+..-|..|+++|.+.|.. =|++.+=..++.+.-.+.--+.
T Consensus 38 v~we~~dI~~Dyvvg~~---tcvLFLSLkYH~L~PeYI~~Ri~~L~~~y~l-rVLL~~VDv~d~~~~L~eL~~~ 107 (146)
T 2a1i_A 38 VPWEFGDVIPDYVLGQS---TCALFLSLRYHNLHPDYIHGRLQSLGKNFAL-RVLLVQVDVKDPQQALKELAKM 107 (146)
T ss_dssp SCEEECCCSSSEEEETT---EEEEEEEHHHHHHSTTHHHHHHHHHTTSSSE-EEEEEECCSSSCHHHHHHHHHH
T ss_pred CCeEecCcCCCEEecCe---eEEEEEecHHhccCHHHHHHHHHHhccccce-EEEEEEEeCCChHHHHHHHHHH
Confidence 34566789999999643 4555554 34444556899999999888754 4444444444444444444333
No 78
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=54.48 E-value=57 Score=25.02 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=55.2
Q ss_pred HHHHHHHhcccceeeeeeeCCce---eeeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCc-cchhh
Q 042199 16 NFISSFLSANSFRLNFVLVAPDF---IFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTR-EQNDS 91 (220)
Q Consensus 16 nfis~fL~AnS~RLnF~~iaPDf---Ifn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~-eq~ds 91 (220)
.-|..|+..++.-| +..+.++= ++ ..|+..+.++..+=+|.....+-.+++++-..|++-+..+.+-.. +++..
T Consensus 101 ~~l~~fi~~~~~pl-v~e~t~~n~~~~~-~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~ 178 (227)
T 4f9z_D 101 TKLSRFIEINSLHM-VTEYNPVTVIGLF-NSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGK 178 (227)
T ss_dssp HHHHHHHHHHCCCS-EEECCHHHHHHHH-HSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHH
T ss_pred HHHHHHHHHhCCCc-eeecCcccHHHHh-ccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHH
Confidence 45788888887654 23344432 22 467777776554422455555666677777777766666666665 45554
Q ss_pred HHHhHhhhccc-cCcceeeecC
Q 042199 92 FVRSYFKYGME-LGRPTFVPVQ 112 (220)
Q Consensus 92 F~~sYFk~gm~-~g~PtfvpV~ 112 (220)
.. .| ||+. .+.|+++=+.
T Consensus 179 ~l-~~--fgl~~~~~P~~~i~~ 197 (227)
T 4f9z_D 179 VI-SF--FKLKESQLPALAIYQ 197 (227)
T ss_dssp HH-HH--TTCCGGGCSEEEEEE
T ss_pred HH-HH--cCCCcccCCEEEEEE
Confidence 44 34 4664 4889876544
No 79
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=53.79 E-value=44 Score=23.20 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=27.8
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
-+-..|...| |..+......+++|..+|+.- ..||.++.
T Consensus 33 ~vlv~f~a~~-C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~ 72 (169)
T 2v1m_A 33 VCLIVNVACK-CGATDKNYRQLQEMHTRLVGKGLRILAFPC 72 (169)
T ss_dssp EEEEEEECSS-STTHHHHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEEeecc-CCchHHHHHHHHHHHHHhhcCCeEEEEEEC
Confidence 3444555566 888888888888888888764 66677764
No 80
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=53.63 E-value=49 Score=22.43 Aligned_cols=64 Identities=25% Similarity=0.464 Sum_probs=36.7
Q ss_pred EEEEEeeccCCCchHHHHHHHH--HHHHhhcceEEEEEecCc--cchhhHHHhHhhhcc--ccCcceeeec-CCc
Q 042199 47 ISFVFITNWDCHNTAVVFSRIK--KLKEQFAHFYVVLALPTR--EQNDSFVRSYFKYGM--ELGRPTFVPV-QDR 114 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~--kLK~qF~~lYVVvtl~t~--eq~dsF~~sYFk~gm--~~g~PtfvpV-~d~ 114 (220)
|-..|-+.| |..+......+. ++..++..-++++.+... +++..+.+. ||. ..|-||++=+ .+-
T Consensus 32 vlv~f~a~w-C~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~---~~v~~~~~~Pt~~~~d~~G 102 (133)
T 3fk8_A 32 TLLVFGANW-CTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQA---YGDPIQDGIPAVVVVNSDG 102 (133)
T ss_dssp EEEEEECTT-CHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHH---TTCGGGGCSSEEEEECTTS
T ss_pred EEEEEcCCC-CHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHH---hCCccCCccceEEEECCCC
Confidence 444566777 666655555555 666666444666666551 344444443 343 2688998876 443
No 81
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=53.14 E-value=3.4 Score=34.75 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=86.3
Q ss_pred HHHHHHHHHHh-hcceEEEEEecCcc-----chhhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhh-hhhhh
Q 042199 63 VFSRIKKLKEQ-FAHFYVVLALPTRE-----QNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGV-CKRQD 135 (220)
Q Consensus 63 ifsRV~kLK~q-F~~lYVVvtl~t~e-----q~dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gv-cKqQ~ 135 (220)
++.-+.+|++. |.+.+++|.-.... ..++....-...-...|. ..+...+++-.-+-+..++..... ++.+.
T Consensus 105 l~~Q~~rl~~~g~~~~~ylIE~~~~~~~~~~~~~~i~~al~~l~~~~~~-~i~~t~~~~~Ta~~l~~lt~~l~e~y~~~~ 183 (307)
T 2zix_A 105 FREQKFRLKRCGLERRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGF-FVKRTADIKESAAYLALLTRGLQRLYQGHT 183 (307)
T ss_dssp HHHHTTTTCTTTCBEEECCBSCCCSSSSCSSCHHHHHHHHHHHHHSSCC-CCCBCCSHHHHTHHHHHHHTTTTTSSCSSC
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCcccccCCCHHHHHHHHHHHhhhcCe-EEEEeCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45556666666 88877777554210 012222222222222333 345566776666666667666553 22221
Q ss_pred hHHHH-HHHHH----------------------------hhhhccceeEEeeeccCCCCccChhHHHHhhhhHHHHHhhh
Q 042199 136 AISKL-KAERR----------------------------RAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKAS 186 (220)
Q Consensus 136 i~s~l-k~ERk----------------------------q~VQ~md~flrvvTSIP~id~HDAn~L~QaIGSieAIakaS 186 (220)
+...- +++.. ...---|.|.+.+..|||+..--|.++.+..+++..+.+|.
T Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~f~~~~~Ks~~~tv~~v~~~~L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay 263 (307)
T 2zix_A 184 LRSRPWGTPGNPESGAMTSPNPLCSLLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAY 263 (307)
T ss_dssp CCCCC----------------CCCCSCCSSTTTTGGGTTTSCCTTTHHHHTTTCSTTCCSTTTTTSSSSSCSHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccCcccccccHHHHHHhhccccCCcHHHHHHHHHHhccCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 11100 00000 01112468899999999999999999999999999998888
Q ss_pred hhh--------hhhccC-------CChhhHHHHHHHhcC
Q 042199 187 KTY--------ILENTD-------LSAEKAEMIVRFFRD 210 (220)
Q Consensus 187 ke~--------IlenTD-------LS~dkAE~i~rffrD 210 (220)
++. .|.|.- +..+-++.|.+||..
T Consensus 264 ~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~f~~ 302 (307)
T 2zix_A 264 DACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQLYCS 302 (307)
T ss_dssp HCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHHHcc
Confidence 752 455531 456778889999973
No 82
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=52.12 E-value=45 Score=21.50 Aligned_cols=64 Identities=17% Similarity=0.334 Sum_probs=38.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|.+.| |..+......++++...++.-..++.+...+. ..+.+. ||. -|-||++=..+
T Consensus 25 ~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~-~~~~~~---~~v-~~~Pt~~~~~~ 88 (115)
T 1thx_A 25 EQPVLVYFWASW-CGPCQLMSPLINLAANTYSDRLKVVKLEIDPN-PTTVKK---YKV-EGVPALRLVKG 88 (115)
T ss_dssp SSCEEEEEECTT-CTTHHHHHHHHHHHHHHTTTTCEEEEEESTTC-HHHHHH---TTC-CSSSEEEEEET
T ss_pred CceEEEEEECCC-CHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCC-HHHHHH---cCC-CceeEEEEEcC
Confidence 334555566666 77777666667778888874355555655433 333333 344 36788876544
No 83
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=51.58 E-value=44 Score=22.50 Aligned_cols=62 Identities=15% Similarity=0.347 Sum_probs=36.1
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+......++++..+++.-..++.+...+. ..+.+. ||. -|-||++=..+
T Consensus 33 ~vlv~f~a~~-C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~---~~v-~~~Pt~~~~~~ 94 (119)
T 1w4v_A 33 PVVVDFHAQW-CGPCKILGPRLEKMVAKQHGKVVMAKVDIDDH-TDLAIE---YEV-SAVPTVLAMKN 94 (119)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHHHTTTSSEEEEEETTTT-HHHHHH---TTC-CSSSEEEEEET
T ss_pred cEEEEEECCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCC-HHHHHH---cCC-CcccEEEEEeC
Confidence 3444555666 77776666667777777764455566654433 333333 443 36788776543
No 84
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=51.31 E-value=11 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=27.0
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
|-..|...| |..+......+++|..+|+.- .+||.++.
T Consensus 49 vlv~F~atw-C~~C~~~~p~l~~l~~~~~~~~~~vi~is~ 87 (187)
T 3dwv_A 49 LLIYNVASK-CGYTKGGYETATTLYNKYKSQGFTVLAFPS 87 (187)
T ss_dssp EEEEEECCB-CSCCTTHHHHHHHHHHHHGGGTCEEEEEEB
T ss_pred EEEEEecCC-CCCcHHHHHHHHHHHHHhhhCCeEEEEEEC
Confidence 555666777 777777777788888888764 66677754
No 85
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=50.80 E-value=45 Score=21.09 Aligned_cols=61 Identities=20% Similarity=0.434 Sum_probs=36.1
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+...-..++++..+++++. ++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 21 ~~~v~f~~~~-C~~C~~~~~~l~~~~~~~~~~~-~~~v~~~~-~~~~~~~---~~v-~~~Pt~~~~~~ 81 (104)
T 2vim_A 21 LIVVDFFAQW-CGPCRNIAPKVEALAKEIPEVE-FAKVDVDQ-NEEAAAK---YSV-TAMPTFVFIKD 81 (104)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHHHCTTSE-EEEEETTT-CHHHHHH---TTC-CSSSEEEEEET
T ss_pred eEEEEEECCC-CHHHHHhhHHHHHHHHHCCCCE-EEEEeccC-CHHHHHH---cCC-ccccEEEEEeC
Confidence 3445566777 7777777777778888887643 34444433 2334333 343 37888775543
No 86
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=50.49 E-value=58 Score=22.46 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=38.6
Q ss_pred eeeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 39 IFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 39 Ifn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
.+..++- +-..|.+.| |........-+++|..+++.-..++.+...+. ..+.+. ||. -|-||++=..+-
T Consensus 46 ~~~~~~~-vvv~f~~~~-C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~---~~v-~~~Pt~~~~~~G 114 (140)
T 1v98_A 46 EVAGAPL-TLVDFFAPW-CGPCRLVSPILEELARDHAGRLKVVKVNVDEH-PGLAAR---YGV-RSVPTLVLFRRG 114 (140)
T ss_dssp ---CCCE-EEEEEECTT-CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC-HHHHHH---TTC-CSSSEEEEEETT
T ss_pred HHHcCCC-EEEEEECCC-CHHHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHH---CCC-CccCEEEEEeCC
Confidence 3345565 666677777 55555555556677778874355555655433 334433 343 378888765443
No 87
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=49.28 E-value=52 Score=22.10 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=38.7
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEec--CccchhhHHHhHhhhccccCcceeeecC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALP--TREQNDSFVRSYFKYGMELGRPTFVPVQ 112 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~--t~eq~dsF~~sYFk~gm~~g~PtfvpV~ 112 (220)
|-.+-..|.+.| |..+......++++...++.-+.++.+. ..+ +..+.+. ||. -|-||++=+.
T Consensus 26 ~k~~lv~f~a~w-C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~-~~~~~~~---~~v-~~~Pt~~~~~ 90 (126)
T 2l57_A 26 GIPTIIMFKTDT-CPYCVEMQKELSYVSKEREGKFNIYYARLEEEK-NIDLAYK---YDA-NIVPTTVFLD 90 (126)
T ss_dssp SSCEEEEEECSS-CHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH-HHHHHHH---TTC-CSSSEEEEEC
T ss_pred CCcEEEEEECCC-CccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc-hHHHHHH---cCC-cceeEEEEEC
Confidence 334555666777 7777766667778888885445666666 433 3334443 343 4789887665
No 88
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=49.03 E-value=49 Score=22.01 Aligned_cols=59 Identities=15% Similarity=0.310 Sum_probs=35.4
Q ss_pred EEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 48 SFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 48 AFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
-..|-+.| |..+...-..+++|..+++++ .++.+... ++....+ +||. -|-||++=..+
T Consensus 23 vv~f~a~w-C~~C~~~~~~l~~~~~~~~~v-~~~~vd~~-~~~~l~~---~~~v-~~~Pt~~~~~~ 81 (110)
T 2l6c_A 23 IVFFHKNL-CPHCKNMEKVLDKFGARAPQV-AISSVDSE-ARPELMK---ELGF-ERVPTLVFIRD 81 (110)
T ss_dssp EEEEECSS-CSTHHHHHHHHHHHHTTCTTS-CEEEEEGG-GCHHHHH---HTTC-CSSCEEEEEES
T ss_pred EEEEECCC-CHhHHHHHHHHHHHHHHCCCc-EEEEEcCc-CCHHHHH---HcCC-cccCEEEEEEC
Confidence 34566666 888877777778888888764 33444433 2333443 3454 37888875433
No 89
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=48.82 E-value=37 Score=23.73 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=34.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+......+++|..++++ ..++.+...++ ....+. ||. -|-||++=..+
T Consensus 39 ~vvv~F~a~w-C~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~-~~l~~~---~~v-~~~Pt~~i~~~ 99 (125)
T 1r26_A 39 LTVAWFTAVW-CGPCKTIERPMEKIAYEFPT-VKFAKVDADNN-SEIVSK---CRV-LQLPTFIIARS 99 (125)
T ss_dssp CEEEEEECTT-CHHHHHTHHHHHHHHHHCTT-SEEEEEETTTC-HHHHHH---TTC-CSSSEEEEEET
T ss_pred EEEEEEECCc-CHhHHHHHHHHHHHHHHCCC-CEEEEEECCCC-HHHHHH---cCC-CcccEEEEEeC
Confidence 3445566777 55555555556667777776 45555655443 334433 443 37899875544
No 90
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.71 E-value=41 Score=23.21 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCCceEEEEEeecc--CCCchHHHHHHHHHHHHhhcc-eEEEEEecCccchhhHHHhHhhhccc-----cCcceeeecCC
Q 042199 42 CGGMSISFVFITNW--DCHNTAVVFSRIKKLKEQFAH-FYVVLALPTREQNDSFVRSYFKYGME-----LGRPTFVPVQD 113 (220)
Q Consensus 42 ~gglSvAFifvt~w--dc~n~a~ifsRV~kLK~qF~~-lYVVvtl~t~eq~dsF~~sYFk~gm~-----~g~PtfvpV~d 113 (220)
..+..+-..|-+.| .|....+.|. +|..+++. -..++.+...+. ..+.+ +||.. -|-||++=..+
T Consensus 24 ~~~~~vlv~f~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~~~~-~~~~~---~~~v~~~~~~~~~Pt~~~~~~ 96 (137)
T 2dj0_A 24 DKRVTWIVEFFANWSNDCQSFAPIYA---DLSLKYNCTGLNFGKVDVGRY-TDVST---RYKVSTSPLTKQLPTLILFQG 96 (137)
T ss_dssp STTSCEEEEECCTTCSTTTTTHHHHH---HHHHHHCSSSCEEEECCTTTC-HHHHH---HTTCCCCSSSSCSSEEEEESS
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHH---HHHHHhCCCCeEEEEEeCccC-HHHHH---HccCcccCCcCCCCEEEEEEC
Confidence 34445666777888 4666666665 55566753 345566655443 33333 35554 28899886644
No 91
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=48.65 E-value=14 Score=33.20 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhhccceeEEeeeccCCCCccChhHHHHh-hhhHHHHHhhhhhhhhhccCCChhhHHHHHH
Q 042199 138 SKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQA-IGSIEAIAKASKTYILENTDLSAEKAEMIVR 206 (220)
Q Consensus 138 s~lk~ERkq~VQ~md~flrvvTSIP~id~HDAn~L~Qa-IGSieAIakaSke~IlenTDLS~dkAE~i~r 206 (220)
..+..=++++.||+-.-+--+..||||...-|..|.++ |-|+++|+ |+.+.+.+-.. ..-|+.|.+
T Consensus 639 ~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~--~~~~~~i~~ 705 (715)
T 2va8_A 639 DKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLG--QKLGEKVVQ 705 (715)
T ss_dssp HHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHC--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhC--hhHHHHHHH
Confidence 33444578888888888777889999999999998765 67999999 99988877654 445666665
No 92
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=48.12 E-value=35 Score=23.55 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=31.0
Q ss_pred EEEEEeeccCCCchHH-HHHHHHHHHHhhcc-eEEEEEec---------CccchhhHHHh
Q 042199 47 ISFVFITNWDCHNTAV-VFSRIKKLKEQFAH-FYVVLALP---------TREQNDSFVRS 95 (220)
Q Consensus 47 vAFifvt~wdc~n~a~-ifsRV~kLK~qF~~-lYVVvtl~---------t~eq~dsF~~s 95 (220)
+-..|...| |..+.. ....+++|..+|+. =..+|.++ +.+....|.+.
T Consensus 31 vlv~f~a~w-C~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~ 89 (158)
T 3eyt_A 31 IVIEAFQML-CPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHE 89 (158)
T ss_dssp EEEEEECTT-CHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHH
T ss_pred EEEEEECCc-CcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHH
Confidence 334455665 777777 48888899999973 35566665 45555556554
No 93
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=47.32 E-value=55 Score=26.70 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHhhcceEEEEEecCccchhhH------HHhHhhhccccCcceeeecCCc----chhHHHHHHHHHhhh
Q 042199 60 TAVVFSRIKKLKEQFAHFYVVLALPTREQNDSF------VRSYFKYGMELGRPTFVPVQDR----EMGFEKIIKIAHSRG 129 (220)
Q Consensus 60 ~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF------~~sYFk~gm~~g~PtfvpV~d~----eMgfEkivkIAh~~g 129 (220)
...+-.-+..|++....+=+++|+.|+.|--.| -..+++.++++|.|.+|=|--. +-...++++.||..|
T Consensus 46 ~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~ 125 (238)
T 1sfl_A 46 VDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYN 125 (238)
T ss_dssp HHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcC
Confidence 344555556666655578899999999874333 2334556888888988866321 112456778888655
Q ss_pred h
Q 042199 130 V 130 (220)
Q Consensus 130 v 130 (220)
+
T Consensus 126 ~ 126 (238)
T 1sfl_A 126 K 126 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=46.71 E-value=69 Score=22.07 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=29.4
Q ss_pred eEEEEEeeccCCCc--hHHHHHHHHHHHHhh-cce-EEEEEecCccchhh
Q 042199 46 SISFVFITNWDCHN--TAVVFSRIKKLKEQF-AHF-YVVLALPTREQNDS 91 (220)
Q Consensus 46 SvAFifvt~wdc~n--~a~ifsRV~kLK~qF-~~l-YVVvtl~t~eq~ds 91 (220)
-+-..|...| |.. +......+++|..+| +.- ..+|.++..+..+.
T Consensus 35 ~vll~F~a~~-C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~ 83 (150)
T 3fw2_A 35 SLLINFWASW-NDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQ 83 (150)
T ss_dssp EEEEEEECTT-CCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHH
T ss_pred EEEEEEEeCC-CCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHH
Confidence 3555566666 777 777788888888888 443 56666665543333
No 95
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=46.29 E-value=33 Score=21.94 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=35.4
Q ss_pred EEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeee
Q 042199 49 FVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 49 Fifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
-+|.+.| |..+...-..++++-.+..--|.++.+...++.....+. ||. -+-||++=
T Consensus 5 ~~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~gv-~~vPt~~i 61 (80)
T 2k8s_A 5 AIFYHAG-CPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEK---AGV-KSVPALVI 61 (80)
T ss_dssp EEEEECS-CHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHH---HTC-CEEEEEEE
T ss_pred EEEeCCC-CCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHH---cCC-CcCCEEEE
Confidence 4677777 777776666666676666556888888764223333333 454 36788763
No 96
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=46.29 E-value=59 Score=21.17 Aligned_cols=63 Identities=13% Similarity=0.290 Sum_probs=35.0
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhh--cceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQF--AHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF--~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|-.+-..|-+.| |..+...-..+++|..++ .+ ..++.+...++ ..+.+. ||. -|-||++=..+
T Consensus 21 ~~~~~v~f~a~w-C~~C~~~~~~~~~~~~~~~~~~-~~~~~vd~~~~-~~~~~~---~~v-~~~Pt~~~~~~ 85 (112)
T 3d6i_A 21 DKLIVLYFHTSW-AEPCKALKQVFEAISNEPSNSN-VSFLSIDADEN-SEISEL---FEI-SAVPYFIIIHK 85 (112)
T ss_dssp TCCEEEEEECCC---CHHHHHHHHHHHHHCGGGTT-SEEEEEETTTC-HHHHHH---TTC-CSSSEEEEEET
T ss_pred CCEEEEEEECCC-CHHHHHHHHHHHHHHHhcCCCC-EEEEEEecccC-HHHHHH---cCC-CcccEEEEEEC
Confidence 333445566666 777766666677777774 44 45555655433 334443 444 47899875443
No 97
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A
Probab=44.99 E-value=60 Score=26.20 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcceEEEEEecCccch---hhHHHhHhhhccccCcceeeecCCcchhH----HHHHHHHHhhhhhh
Q 042199 63 VFSRIKKLKEQFAHFYVVLALPTREQN---DSFVRSYFKYGMELGRPTFVPVQDREMGF----EKIIKIAHSRGVCK 132 (220)
Q Consensus 63 ifsRV~kLK~qF~~lYVVvtl~t~eq~---dsF~~sYFk~gm~~g~PtfvpV~d~eMgf----EkivkIAh~~gvcK 132 (220)
+-.-+..||+. .+=+++|+.|+.|- +.--..+++.+.++ |.+| |.|+.+ +.+++++|.+| +|
T Consensus 42 v~~~~~~lr~~--~~PiI~T~R~~~eGG~~~~~~~~ll~~~~~~--~d~i---DvEl~~~~~~~~l~~~~~~~g-~k 110 (219)
T 2egz_A 42 VKEKLEEVHSQ--GLKTILTIRSPEEGGREVKNREELFEELSPL--SDYT---DIELSSRGLLVKLYNITKEAG-KK 110 (219)
T ss_dssp HHHHHHHHHHT--TCEEEEECCCGGGTCCCCTTHHHHHHHHTTT--SSEE---EEETTCHHHHHHHHHHHHHTT-CE
T ss_pred HHHHHHHHHhc--CCcEEEEEeehhccCCCHHHHHHHHHHHHhc--CCEE---EEEccCCccHHHHHHHHHHcC-CE
Confidence 33345666664 58899999998873 33334455557766 6666 445544 58999999988 44
No 98
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=44.62 E-value=66 Score=21.30 Aligned_cols=41 Identities=12% Similarity=0.317 Sum_probs=27.8
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhc-ceEEEEEecC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFA-HFYVVLALPT 85 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~-~lYVVvtl~t 85 (220)
|=.+-..|.+.| |..+......+++|..+++ .=..+|.++.
T Consensus 34 gk~~ll~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~ 75 (145)
T 3erw_A 34 GQKTILHFWTSW-CPPCKKELPQFQSFYDAHPSDSVKLVTVNL 75 (145)
T ss_dssp TSEEEEEEECSS-CHHHHHHHHHHHHHHHHCCCSSEEEEEEEC
T ss_pred CCEEEEEEECCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEEc
Confidence 334455566666 8888888889999999998 2244555543
No 99
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=44.29 E-value=46 Score=23.17 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=35.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccc-----hhhHHHhHhhhccccCcceeeecCCc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQ-----NDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq-----~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
.+-..|-+.| |..+......+++|..+++ ..++.+...+. .+...+-.=+||. -|-||++=..+-
T Consensus 33 ~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v-~~~Pt~~~~~~G 102 (135)
T 3emx_A 33 DAILAVYSKT-CPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGV-EGTPTLVFYKEG 102 (135)
T ss_dssp SEEEEEEETT-CHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTC-CSSSEEEEEETT
T ss_pred cEEEEEECCc-CHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCC-ceeCeEEEEcCC
Confidence 4455566777 6666666666777878877 34444444111 1222222223454 478888765543
No 100
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=44.19 E-value=59 Score=20.58 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+...-..++++...+++-..++.+...+. ....+. ||. -|-||++=..+
T Consensus 21 ~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~---~~v-~~~Pt~~~~~~ 82 (106)
T 3die_A 21 VQLVDFWATA-CGPCKMIAPVLEELAADYEGKADILKLDVDEN-PSTAAK---YEV-MSIPTLIVFKD 82 (106)
T ss_dssp EEEEEEECSB-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC-HHHHHH---TTC-CSBSEEEEEET
T ss_pred cEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCcEEEEEECCcC-HHHHHh---CCC-cccCEEEEEeC
Confidence 3445566676 88777777778888888886555666665443 333443 333 36788865543
No 101
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=44.10 E-value=74 Score=21.96 Aligned_cols=63 Identities=16% Similarity=0.426 Sum_probs=37.3
Q ss_pred CCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeec
Q 042199 43 GGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPV 111 (220)
Q Consensus 43 gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV 111 (220)
+|-.+-..|-+.| |..+......+++|..+++.-..++.+...+ +..+.+. ||. -|-||++=+
T Consensus 37 ~~k~~lv~f~a~w-C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~-~~~l~~~---~~v-~~~Pt~~~~ 99 (136)
T 2l5l_A 37 GDKPAIVDFYADW-CGPCKMVAPILDELAKEYDGQIVIYKVDTEK-EQELAGA---FGI-RSIPSILFI 99 (136)
T ss_dssp CSSCEEEEEECTT-SHHHHHHHHHHHHHHHHTTTTCEEEEEETTT-CHHHHHH---TTC-CSSCEEEEE
T ss_pred CCCEEEEEEECCc-CHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC-CHHHHHH---cCC-CCCCEEEEE
Confidence 3444555666777 6666666666677777786435555555443 3334443 343 368998866
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=43.93 E-value=62 Score=25.05 Aligned_cols=63 Identities=16% Similarity=0.344 Sum_probs=39.6
Q ss_pred CCceEEEEEeecc--CCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 43 GGMSISFVFITNW--DCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 43 gglSvAFifvt~w--dc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.|-.|-.-|-+.| .|....|+|.. |...++.-.+++.+...+. ..+.+ +||. -|-||++=+.+
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~---~~~~~~~~~~~~~vd~~~~-~~~~~---~~~v-~~~Pt~~~~~~ 89 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILES---LAAQYNGQFILAKLDCDAE-QMIAA---QFGL-RAIPTVYLFQN 89 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHH---HHHHHTSSSEEEEEETTTC-HHHHH---TTTC-CSSSEEEEEET
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHH---HHHHcCCCeEEEEEeCccC-HHHHH---HcCC-CCCCeEEEEEC
Confidence 4666777888999 68888888765 4556665466666766543 33333 3453 37788765433
No 103
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=43.80 E-value=25 Score=36.76 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=68.2
Q ss_pred CcchhHHHHHHHHHhh-hhhhhhhhHHHHH--HH-HHhhhhccceeEEeeeccCCCCccChhHHHH-hhhhHHHHHhhhh
Q 042199 113 DREMGFEKIIKIAHSR-GVCKRQDAISKLK--AE-RRRAVQTMDVFLRVVTSIPLIDNHDANALNQ-AIGSIEAIAKASK 187 (220)
Q Consensus 113 d~eMgfEkivkIAh~~-gvcKqQ~i~s~lk--~E-Rkq~VQ~md~flrvvTSIP~id~HDAn~L~Q-aIGSieAIakaSk 187 (220)
|..-=++...+|+++- -+|...+-..... .| .+.++|++=.-+=.+..||||+..-|..|.+ +|-|+++|+.++.
T Consensus 1510 D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~ 1589 (1724)
T 4f92_B 1510 DTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMED 1589 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCH
Confidence 3333355555555542 2455544332111 12 5677787755555788999999999999876 5889999999999
Q ss_pred hhhhhccCCChhhHHHHHHHhc
Q 042199 188 TYILENTDLSAEKAEMIVRFFR 209 (220)
Q Consensus 188 e~IlenTDLS~dkAE~i~rffr 209 (220)
+.+-+-..++......|.+|.+
T Consensus 1590 ~~~~~ll~~~~~~~~~i~~~~~ 1611 (1724)
T 4f92_B 1590 EERNALLQLTDSQIADVARFCN 1611 (1724)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHH
Confidence 9988888899999888888875
No 104
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=43.04 E-value=53 Score=27.74 Aligned_cols=69 Identities=7% Similarity=0.128 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhcceEEEEEecCccchhhH------HHhHhhhccccCcceeeecCC--cchhHHHHHHHHHhhh
Q 042199 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSF------VRSYFKYGMELGRPTFVPVQD--REMGFEKIIKIAHSRG 129 (220)
Q Consensus 61 a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF------~~sYFk~gm~~g~PtfvpV~d--~eMgfEkivkIAh~~g 129 (220)
..+-.-+..||+...++=+++|+.|+.|--.| -..+++.+.++|.|-+|=|-- .+--+.++++.||..|
T Consensus 83 ~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~ 159 (276)
T 3o1n_A 83 ESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159 (276)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCC
Confidence 45666677888888899999999998875443 333455588999888875531 1112456666666655
No 105
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=42.83 E-value=83 Score=21.92 Aligned_cols=36 Identities=19% Similarity=0.575 Sum_probs=25.5
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEec
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALP 84 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~ 84 (220)
+-..|...| |..+......+++|..+|+++- ||.++
T Consensus 40 ~lv~F~~~~-C~~C~~~~~~l~~l~~~~~~v~-vv~i~ 75 (165)
T 3ha9_A 40 VILWFMAAW-CPSCVYMADLLDRLTEKYREIS-VIAID 75 (165)
T ss_dssp EEEEEECTT-CTTHHHHHHHHHHHHHHCTTEE-EEEEE
T ss_pred EEEEEECCC-CcchhhhHHHHHHHHHHcCCcE-EEEEE
Confidence 444455565 8888888999999999998543 44443
No 106
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.82 E-value=72 Score=21.35 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcc-eEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAH-FYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~-lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
+-..|-+.| |..+......+++|..+++. -..++.+...+ +..+.+. ||. -|-||++=..+-
T Consensus 25 vlv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~---~~v-~~~Pt~~~~~~G 87 (126)
T 1x5e_A 25 WMIEFYAPW-CPACQNLQPEWESFAEWGEDLEVNIAKVDVTE-QPGLSGR---FII-NALPTIYHCKDG 87 (126)
T ss_dssp EEEEEECSS-CHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT-CHHHHHH---TTC-CSSSEEEEEETT
T ss_pred EEEEEECCC-CHHHHHHhHHHHHHHHHhccCCeEEEEEECcC-CHHHHHH---cCC-cccCEEEEEeCC
Confidence 545566777 66665555555666666663 24455554433 3334433 443 478998876553
No 107
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=42.70 E-value=42 Score=23.20 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=30.1
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEE--EecCccchhhHHHh
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVL--ALPTREQNDSFVRS 95 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVv--tl~t~eq~dsF~~s 95 (220)
-|-..|...| |..+......+.+|..+|+.- ..+| .+.+.++...|.+.
T Consensus 26 ~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~ 77 (151)
T 3raz_A 26 VRIVNLWATW-CGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQ 77 (151)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEEEEcCc-CHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHH
Confidence 4455566776 777777778888888888432 3344 44444555555554
No 108
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=42.63 E-value=77 Score=21.67 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=30.0
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC---ccchhhHHHh
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT---REQNDSFVRS 95 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t---~eq~dsF~~s 95 (220)
-+-..|...| |..+......+++|..+++.- ..|+.+.. .+....|.+.
T Consensus 28 ~vlv~F~~~~-C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~ 80 (151)
T 2f9s_A 28 GVFLNFWGTW-CEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKS 80 (151)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHH
T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHH
Confidence 3445566666 888888888888888888752 34444433 3444455543
No 109
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=42.05 E-value=71 Score=21.55 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=27.3
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhc--ceEEEEEecCcc
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFA--HFYVVLALPTRE 87 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~--~lYVVvtl~t~e 87 (220)
+-..|-..| |..+......+++|..+++ .-..|+.++..+
T Consensus 31 vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~ 72 (144)
T 1o73_A 31 VFLYFSASW-CPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE 72 (144)
T ss_dssp EEEEEECTT-CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS
T ss_pred EEEEEECcC-CHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCC
Confidence 445566666 8888888888888888887 334555555444
No 110
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=41.54 E-value=63 Score=23.05 Aligned_cols=38 Identities=13% Similarity=0.407 Sum_probs=25.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
-+-..|...| |..+. ....+++|..+|+.- ..||.++.
T Consensus 34 ~vll~F~a~w-C~~C~-~~~~l~~l~~~~~~~~v~vv~vs~ 72 (171)
T 3cmi_A 34 VVLIVNVASK-CGFTP-QYKELEALYKRYKDEGFTIIGFPC 72 (171)
T ss_dssp EEEEEEEESS-SCCHH-HHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred EEEEEEEecC-CCcch-hHHHHHHHHHHhccCCeEEEEEEC
Confidence 3444455666 67777 777888888888764 66777753
No 111
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=41.34 E-value=48 Score=27.51 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcceEEEEEecCccchhhH-------HHhHhhhccccCcceeeecCC--cchhHHHHHHHHHhhhh
Q 042199 61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSF-------VRSYFKYGMELGRPTFVPVQD--REMGFEKIIKIAHSRGV 130 (220)
Q Consensus 61 a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF-------~~sYFk~gm~~g~PtfvpV~d--~eMgfEkivkIAh~~gv 130 (220)
..+-.-+..|++....+=+++|+.|+.|--.| -..+++.++++|.|.+|=|-- .+ .+.++++.||..|+
T Consensus 63 ~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~ 140 (257)
T 2yr1_A 63 ERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSV 140 (257)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCC
Confidence 44555666777766678899999999775555 334556688999888876532 12 56788888886554
No 112
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=41.15 E-value=40 Score=26.28 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=24.8
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
|-..|...| |..+ .-+..+++|..+|+.- .+||.+|.
T Consensus 41 vll~F~At~-C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~ 78 (207)
T 2r37_A 41 VLFVNVASY-GGLT-GQYIELNALQEELAPFGLVILGFPC 78 (207)
T ss_dssp EEEEEECSS-STTT-THHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEeCCC-CCCh-HHHHHHHHHHHHhccCCEEEEEEEC
Confidence 444555666 6666 4566778888888654 78888873
No 113
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=40.97 E-value=27 Score=28.01 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=37.0
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
.|+|++|+..+.+--. .-++-|++.++ |.....-..++|++.|...|+
T Consensus 69 ~V~i~tp~~~h~~~~~-----~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~ 118 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIK-----ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNL 118 (308)
T ss_dssp EEEECCCGGGHHHHHH-----HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCcHhHHHHHH-----HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 5788888877655433 34678999988 777777788999999998874
No 114
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=40.76 E-value=39 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=26.1
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPT 85 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t 85 (220)
-+-..|...| |..+......+++|..+|+.-..+|.++.
T Consensus 35 ~vlv~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~v~v~~ 73 (188)
T 2cvb_A 35 LLAVVFMCNH-CPYVKGSIGELVALAERYRGKVAFVGINA 73 (188)
T ss_dssp EEEEEEECSS-CHHHHTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred EEEEEEECCC-CccHHHHHHHHHHHHHHhhcCeEEEEEEc
Confidence 3455566666 77666777778888888876455566654
No 115
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=40.73 E-value=49 Score=22.45 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=34.8
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+-..|-+.| |..+......++++..++++ ..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 33 vvv~F~a~w-C~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~-~~~l~~~---~~v-~~~Pt~~~~~~ 92 (114)
T 2oe3_A 33 LVIDFYATW-CGPCKMMQPHLTKLIQAYPD-VRFVKCDVDE-SPDIAKE---CEV-TAMPTFVLGKD 92 (114)
T ss_dssp EEEEEECTT-CHHHHHTHHHHHHHHHHCTT-SEEEEEETTT-CHHHHHH---TTC-CSBSEEEEEET
T ss_pred EEEEEECCC-CHHHHHHHHHHHHHHHHCCC-CEEEEEECCC-CHHHHHH---CCC-CcccEEEEEeC
Confidence 334455666 66666666666777778887 5555555443 3334443 343 37888864433
No 116
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=40.69 E-value=1e+02 Score=24.27 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=20.8
Q ss_pred eEEEEEeecc-CCCchHHHHHHHHHHHHhhc
Q 042199 46 SISFVFITNW-DCHNTAVVFSRIKKLKEQFA 75 (220)
Q Consensus 46 SvAFifvt~w-dc~n~a~ifsRV~kLK~qF~ 75 (220)
.|-.+|.+.| +|..+..+=..++++.....
T Consensus 27 pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~ 57 (243)
T 2hls_A 27 PVEVHVFLSKSGCETCEDTLRLMKLFEEESP 57 (243)
T ss_dssp CEEEEEEECSSSCTTHHHHHHHHHHHHHHSC
T ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHHhcc
Confidence 4555666777 48888777777777777643
No 117
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=40.49 E-value=78 Score=20.91 Aligned_cols=62 Identities=16% Similarity=0.438 Sum_probs=34.1
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+......++++..+++.-..++.+...+. ..+.+. ||. -|-||++=+.+
T Consensus 19 ~~lv~f~a~w-C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~~l~~~---~~v-~~~Pt~~~~~~ 80 (112)
T 2voc_A 19 VVLADFWAPW-CGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN-QETAGK---YGV-MSIPTLLVLKD 80 (112)
T ss_dssp EEEEEEECTT-BGGGGGHHHHHHHHHHHHTTTCEEEEEETTTC-CSHHHH---TTC-CSBSEEEEEET
T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-HHHHHH---cCC-CcccEEEEEeC
Confidence 3445566777 55555555555667777764345555554433 333333 343 36788876544
No 118
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=40.38 E-value=41 Score=25.64 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=37.9
Q ss_pred eeeeeeeCCceeeeCC-----------Cc-eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 28 RLNFVLVAPDFIFNCG-----------GM-SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 28 RLnF~~iaPDfIfn~g-----------gl-SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
.|.-=.-+|||-+.+. |= -|-..|...| |..+......+++|..+|+.- ..||.++.
T Consensus 31 ~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~-C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~ 100 (218)
T 3u5r_E 31 SITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNR-CPFVVLIREALAKFAGDYAGQGLAVVAINS 100 (218)
T ss_dssp CCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSS-CHHHHTTHHHHHHHHHHHTTTTEEEEEEEC
T ss_pred cCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCC-CccHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 3444445788876431 22 2566677777 888888888899999999764 55666654
No 119
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=40.11 E-value=13 Score=26.97 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=42.9
Q ss_pred cCCCCccChhHHH-HhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHh
Q 042199 161 IPLIDNHDANALN-QAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFF 208 (220)
Q Consensus 161 IP~id~HDAn~L~-QaIGSieAIakaSke~IlenTDLS~dkAE~i~rff 208 (220)
.||++-+=.+.|. +.|.+++.+-.++-+++++.|+||-+.+..|.|..
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l 57 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVL 57 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4899988888885 67999999999999999999999999998888765
No 120
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=39.94 E-value=9.5 Score=24.83 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.3
Q ss_pred eeecCCcchhHHHHHHHHHhhhhhhhh
Q 042199 108 FVPVQDREMGFEKIIKIAHSRGVCKRQ 134 (220)
Q Consensus 108 fvpV~d~eMgfEkivkIAh~~gvcKqQ 134 (220)
.+|-++-|++||-|+ |-+||..++|
T Consensus 12 lYP~~~~E~s~eEll--A~sRg~~~~~ 36 (36)
T 2i3s_B 12 IYPENDEEFNTEEIL--AMIKGLYKVQ 36 (36)
T ss_dssp HSTTSSCCCCHHHHH--HHHTTCSSCC
T ss_pred ecCCCCcEecHHHHH--HHhhcccccC
Confidence 456678999999998 7888987765
No 121
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=39.79 E-value=80 Score=21.49 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=27.7
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhc--ceEEEEEecCc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFA--HFYVVLALPTR 86 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~--~lYVVvtl~t~ 86 (220)
-+-..|-..| |..+......+++|..+++ .-..||.++..
T Consensus 30 ~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d 71 (144)
T 1i5g_A 30 TVFFYFSASW-CPPSRAFTPQLIDFYKAHAEKKNFEVMLISWD 71 (144)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC
T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 3556677777 8888888888888888887 23455555543
No 122
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=39.56 E-value=58 Score=22.59 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccc
Q 042199 58 HNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGME 102 (220)
Q Consensus 58 ~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~ 102 (220)
.+...++..+.++ ++=++++..++.++.+.+.+..=+.|++
T Consensus 110 ~~~~~~l~~~~~~----~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 110 KNIEKIIEILDKK----KINHIVANTIVLENAAKIINEFESRGYN 150 (183)
T ss_dssp SCHHHHHHHHHHT----TCCEEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred ccHHHHHHHHhhC----CCCEEEEEecccccHHHHHHHHHHcCCe
Confidence 4556677766666 7778888888887777776666666643
No 123
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=39.48 E-value=91 Score=21.64 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 43 GGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 43 gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.|-.+-..|-+.| |......-..++++..++..-..++.+...+. ..+.+. ||. -|-||++=..+
T Consensus 54 ~~k~vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~-~~l~~~---~~v-~~~Pt~~~~~~ 118 (148)
T 3p2a_A 54 DDLPMVIDFWAPW-CGPCRSFAPIFAETAAERAGKVRFVKVNTEAE-PALSTR---FRI-RSIPTIMLYRN 118 (148)
T ss_dssp CSSCEEEEEECSS-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC-HHHHHH---TTC-CSSSEEEEEET
T ss_pred cCCcEEEEEECCC-CHHHHHHHHHHHHHHHHcCCceEEEEEECcCC-HHHHHH---CCC-CccCEEEEEEC
Confidence 3444556677787 55555555556667777754455666655443 334443 343 47798876544
No 124
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=39.33 E-value=70 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=26.4
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
|-..|...| |..+-.....+++|..+|+.- ..||.++.
T Consensus 50 vlv~Fwatw-C~~C~~e~p~l~~l~~~~~~~g~~vv~v~~ 88 (208)
T 2f8a_A 50 LLIENVASL-GGTTVRDYTQMNELQRRLGPRGLVVLGFPC 88 (208)
T ss_dssp EEEEEECSS-STTHHHHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred EEEEEECCC-CccHHHHHHHHHHHHHHccCCCeEEEEEEC
Confidence 445555666 666766677778888888764 67777775
No 125
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=38.72 E-value=73 Score=20.12 Aligned_cols=62 Identities=26% Similarity=0.515 Sum_probs=35.7
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+...-..++++...++.-..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 22 ~~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~-~~~~~~~---~~v-~~~Pt~~~~~~ 83 (106)
T 1xwb_A 22 LVVLDFFATW-CGPCKMISPKLVELSTQFADNVVVLKVDVDE-CEDIAME---YNI-SSMPTFVFLKN 83 (106)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTEEEEEEETTT-CHHHHHH---TTC-CSSSEEEEEET
T ss_pred EEEEEEECCc-CHHHHHhhHHHHHHHHHhCCCeEEEEEeccc-hHHHHHH---cCC-CcccEEEEEcC
Confidence 3445566676 6666666666777777884334555555543 3334433 343 46888875544
No 126
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=38.69 E-value=99 Score=23.11 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=41.1
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCcc
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDRE 115 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~e 115 (220)
|-.+-..|-+.| |..+.....-+++|...++.-..++.+...+. ..+.+. ||.. |-||++=..+-+
T Consensus 114 ~~~vlv~F~a~w-C~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~-~~l~~~---~~v~-~~Pt~~~~~~G~ 179 (210)
T 3apq_A 114 GELWFVNFYSPG-CSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD-RMLCRM---KGVN-SYPSLFIFRSGM 179 (210)
T ss_dssp SCCEEEEEECTT-CHHHHHHHHHHHHHHHHTBTTBEEEEEETTTC-HHHHHH---TTCC-SSSEEEEECTTS
T ss_pred CCcEEEEEeCCC-ChhHHHHHHHHHHHHHHhcCceEEEEEECCcc-HHHHHH---cCCC-cCCeEEEEECCC
Confidence 334556677788 77666666666777777876566666665443 334443 4543 789988665543
No 127
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=38.33 E-value=77 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=31.0
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcc--eEEEEEecCccchh
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAH--FYVVLALPTREQND 90 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~--lYVVvtl~t~eq~d 90 (220)
-|-..|-..| |..+......+++|..+|+. =..||.++..+..+
T Consensus 50 ~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~ 95 (165)
T 3s9f_A 50 TVFFYFSASW-CPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEED 95 (165)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHH
T ss_pred EEEEEEECCc-ChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHH
Confidence 3555677788 88888888899999999985 45556665444433
No 128
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=38.24 E-value=80 Score=20.41 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=34.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+......+++|..++.+ ..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 23 ~v~v~f~a~w-C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~-~~~~~~~---~~v-~~~Pt~~~~~~ 83 (107)
T 1gh2_A 23 LAVVKFTMRG-CGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQ-CQGTAAT---NNI-SATPTFQFFRN 83 (107)
T ss_dssp CEEEEEECSS-CHHHHHHHHHHHHHHHHCTT-SEEEEEETTT-SHHHHHH---TTC-CSSSEEEEEET
T ss_pred EEEEEEECCC-ChhhHHHHHHHHHHHHHCCC-cEEEEEECcc-CHHHHHh---cCC-CcccEEEEEEC
Confidence 3445566677 66655555556667777766 3445555443 3334443 443 47898876544
No 129
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=37.55 E-value=97 Score=21.18 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=26.0
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhc--ceEEEEEecCc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFA--HFYVVLALPTR 86 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~--~lYVVvtl~t~ 86 (220)
-+-..|-..| |..+......+++|..+|+ .-..|+.++..
T Consensus 30 ~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d 71 (146)
T 1o8x_A 30 LVFFYFSASW-CPPARGFTPQLIEFYDKFHESKNFEVVFCTWD 71 (146)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC
T ss_pred EEEEEEEccC-CHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCC
Confidence 3445566666 7777777777888888887 23445555443
No 130
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=37.48 E-value=61 Score=27.89 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=42.1
Q ss_pred ceeeeeeeCCcee-----eeCC-----------CceEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC----
Q 042199 27 FRLNFVLVAPDFI-----FNCG-----------GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT---- 85 (220)
Q Consensus 27 ~RLnF~~iaPDfI-----fn~g-----------glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t---- 85 (220)
.+|.--.-+|||- +++. |=-+-..|...| |..+......+++|..+|+.- .+||.++.
T Consensus 49 ~~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atw-C~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~ 127 (352)
T 2hyx_A 49 AQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYS-CINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYA 127 (352)
T ss_dssp SSCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTT-CHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSG
T ss_pred cccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCC-ChhHHHHHHHHHHHHHHhhcCCeEEEEEECCccc
Confidence 3444445578887 5431 223444555666 788888888888999999752 56666653
Q ss_pred ----ccchhhHHHh
Q 042199 86 ----REQNDSFVRS 95 (220)
Q Consensus 86 ----~eq~dsF~~s 95 (220)
.++...|.+.
T Consensus 128 ~~d~~~~~~~~~~~ 141 (352)
T 2hyx_A 128 FEKVPGNVAKGAAN 141 (352)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 4455555554
No 131
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=37.48 E-value=56 Score=27.13 Aligned_cols=93 Identities=6% Similarity=-0.013 Sum_probs=49.7
Q ss_pred HHHHHHHhcccceeeeeeeCCcee--eeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHH
Q 042199 16 NFISSFLSANSFRLNFVLVAPDFI--FNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFV 93 (220)
Q Consensus 16 nfis~fL~AnS~RLnF~~iaPDfI--fn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~ 93 (220)
.-|..|+..+++-+ +..+.++-. +.|+|..++++|++.|+......+...+.+.-..|+.-+..+.+...+ +..+.
T Consensus 207 ~~l~~fi~~~~~p~-v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~-~~~~~ 284 (382)
T 2r2j_A 207 DVTYNWIQDKCVPL-VREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDK-FRHPL 284 (382)
T ss_dssp HHHHHHHHHHHSCS-SEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTT-THHHH
T ss_pred HHHHHHHHhcccCc-eEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHH-hHHHH
Confidence 44666666666422 112222111 247899999999999865545444466665444555434444444443 33343
Q ss_pred HhHhhhccccCcceeeecC
Q 042199 94 RSYFKYGMELGRPTFVPVQ 112 (220)
Q Consensus 94 ~sYFk~gm~~g~PtfvpV~ 112 (220)
.||..+- -+.|+++=..
T Consensus 285 -~~~gl~~-~~~P~i~i~~ 301 (382)
T 2r2j_A 285 -LHIQKTP-ADCPVIAIDS 301 (382)
T ss_dssp -HHTTCCG-GGCSEEEEEC
T ss_pred -HHcCCCc-cCCCEEEEEc
Confidence 3544432 2678876443
No 132
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=37.37 E-value=90 Score=21.26 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=29.5
Q ss_pred EEEEEeeccCCCchHHHHHHHHH---HHHhhcc-eEEEEEecCccchhhHHH
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKK---LKEQFAH-FYVVLALPTREQNDSFVR 94 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~k---LK~qF~~-lYVVvtl~t~eq~dsF~~ 94 (220)
+-..|-..| |..+......+++ |..+|+. =..||.+...+..+.+.+
T Consensus 34 vll~F~a~w-C~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~ 84 (142)
T 3eur_A 34 TLLFINNPG-CHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKK 84 (142)
T ss_dssp EEEEECCSS-SHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHH
T ss_pred EEEEEECCC-CccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHH
Confidence 444555666 7777777777777 7877743 356666766655454443
No 133
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=35.36 E-value=80 Score=19.58 Aligned_cols=59 Identities=22% Similarity=0.448 Sum_probs=35.9
Q ss_pred EEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 48 SFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 48 AFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
-..|-+.| |..+......++++..++++ ..++.+...++. .+.+. ||. -|-||++=..+
T Consensus 20 ~v~f~~~~-C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~---~~v-~~~Pt~~~~~~ 78 (104)
T 2e0q_A 20 VVDFWAEW-CAPCLILAPIIEELAEDYPQ-VGFGKLNSDENP-DIAAR---YGV-MSLPTVIFFKD 78 (104)
T ss_dssp EEEEECTT-CHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH-HHHHH---TTC-CSSCEEEEEET
T ss_pred EEEEECCC-ChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCH-HHHHh---CCc-cccCEEEEEEC
Confidence 33444555 66666666667778888887 666666655433 33333 343 36788876544
No 134
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=35.33 E-value=62 Score=24.61 Aligned_cols=64 Identities=9% Similarity=0.185 Sum_probs=37.6
Q ss_pred CceEEEEEeecc--CCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNW--DCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~w--dc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|=.+-..|-+.| +|....|++.++ -..++++-+ +.+. .+++....+.|.+.| .-|-||++=..+
T Consensus 54 ~k~vvv~F~A~WC~pC~~~~P~l~~l---~~~~~~v~~-~~v~-~d~~~~~~~~~~~~~-v~~iPt~i~~~~ 119 (167)
T 1z6n_A 54 RRYRLLVAGEMWCPDCQINLAALDFA---QRLQPNIEL-AIIS-KGRAEDDLRQRLALE-RIAIPLVLVLDE 119 (167)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHH---HHHCTTEEE-EEEC-HHHHHHHTTTTTTCS-SCCSSEEEEECT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHH---HHHCCCcEE-EEEE-CCCCHHHHHHHHHcC-CCCcCeEEEECC
Confidence 334566788999 666667777665 445666433 3333 334455556665433 467888776554
No 135
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=35.30 E-value=44 Score=27.35 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=37.0
Q ss_pred ccceeeeeeeCCceeeeCCCceEEEE---------------EeeccCCCchHHHHHHHHHHHHhhcceEEEEEe
Q 042199 25 NSFRLNFVLVAPDFIFNCGGMSISFV---------------FITNWDCHNTAVVFSRIKKLKEQFAHFYVVLAL 83 (220)
Q Consensus 25 nS~RLnF~~iaPDfIfn~gglSvAFi---------------fvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl 83 (220)
++.+++=+||-|+. .|-=+-.||. |...|+-.+.. +.++.+||.|.+++=|++.+
T Consensus 13 ~~~~~~d~pid~~l--~ctHliyaFai~~~~~~~~~~~~g~~~~~w~~~~~~--~~~~~~lK~~~~~lKvllSi 82 (275)
T 3sim_A 13 SGVKFSDVPINPHI--TKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILG--PDQISAIKSSHPNVRVAVSL 82 (275)
T ss_dssp CCCCGGGSCCCTTC--SEEEEEEEEEESBCSSSSCCBCTTCCEECSCTTTSC--HHHHHHHHHHCTTEEEEEEE
T ss_pred CCCCCccCCCCCCc--cccEEEEEEEecccCccccCCCCCcccccccccccc--HHHHHHHHHhCCCCEEEEEE
Confidence 56677778888875 0111223444 22457655432 89999999999999999887
No 136
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=35.01 E-value=97 Score=20.96 Aligned_cols=61 Identities=13% Similarity=0.282 Sum_probs=35.4
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+......+++|..++.+ +.++.+...+. ..+.+ +||. -|-||++=..+
T Consensus 25 ~vlv~f~a~w-C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~-~~~~~---~~~i-~~~Pt~~~~~~ 85 (118)
T 2f51_A 25 LVLVDFFATW-CGPCQRLGQILPSIAEANKD-VTFIKVDVDKN-GNAAD---AYGV-SSIPALFFVKK 85 (118)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHHHCTT-SEEEEEETTTC-HHHHH---HTTC-CSSSEEEEEEE
T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-eEEEEEECCCC-HHHHH---hcCC-CCCCEEEEEeC
Confidence 3445566777 66666666666777777744 34555554433 33333 3443 37899876643
No 137
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=34.98 E-value=97 Score=20.41 Aligned_cols=61 Identities=18% Similarity=0.441 Sum_probs=36.4
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-..|-+.| |..+......+++|..++++ +.++.+...+. ..+.+ +||. -|-||++=..+
T Consensus 36 ~~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~-~~~~~---~~~v-~~~Pt~~~~~~ 96 (122)
T 2vlu_A 36 LVVIDFTASW-CGPCRIMAPVFADLAKKFPN-AVFLKVDVDEL-KPIAE---QFSV-EAMPTFLFMKE 96 (122)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHHHCTT-SEEEEEETTTC-HHHHH---HTTC-CSSSEEEEEET
T ss_pred EEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-cEEEEEECCCC-HHHHH---HcCC-CcccEEEEEeC
Confidence 3444555666 66666666666677788887 56666665443 33433 3443 36888875444
No 138
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=34.98 E-value=53 Score=22.47 Aligned_cols=44 Identities=23% Similarity=0.519 Sum_probs=26.4
Q ss_pred EEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEe---cCccchhhHHH
Q 042199 49 FVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLAL---PTREQNDSFVR 94 (220)
Q Consensus 49 Fifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl---~t~eq~dsF~~ 94 (220)
..|...| |..+......+++|..++ ++ .|.|.+ .+.++...|.+
T Consensus 35 l~f~~~~-C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~ 82 (154)
T 3ia1_A 35 IVFWASW-CTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMK 82 (154)
T ss_dssp EEEECTT-CHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHT
T ss_pred EEEEccc-ChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHH
Confidence 3444554 778888888888888888 44 333455 33444444433
No 139
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=34.93 E-value=1.1e+02 Score=20.83 Aligned_cols=64 Identities=17% Similarity=0.468 Sum_probs=39.4
Q ss_pred CceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 44 GMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 44 glSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
|=.+-..|-+.| |..+......++++..+++.-..++.+...+. ....+. ||. -|-||++=+.+
T Consensus 42 ~k~vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~-~~l~~~---~~v-~~~Pt~~~~~~ 105 (128)
T 3ul3_B 42 NTVIVLYFFAKW-CQACTMQSTEMDKLQKYYGKRIYLLKVDLDKN-ESLARK---FSV-KSLPTIILLKN 105 (128)
T ss_dssp CSEEEEEEECTT-CHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGC-HHHHHH---TTC-CSSSEEEEEET
T ss_pred CCEEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC-HHHHHH---cCC-CCcCEEEEEEC
Confidence 444555667777 77776666667777778875456666655433 334333 343 47898876644
No 140
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=34.53 E-value=1.4e+02 Score=22.10 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=41.5
Q ss_pred eCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCc-cchhhHHHhHhhhcccc-Ccceeee
Q 042199 41 NCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTR-EQNDSFVRSYFKYGMEL-GRPTFVP 110 (220)
Q Consensus 41 n~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~-eq~dsF~~sYFk~gm~~-g~Ptfvp 110 (220)
..+|+.+++++.++=+-.....+-++++++-..|+.-+..|++.+. +++.. .-.|| |+.- ..|+++=
T Consensus 28 ~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~-~l~~f--Gl~~~~~P~v~i 96 (147)
T 3bj5_A 28 FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQR-ILEFF--GLKKEECPAVRL 96 (147)
T ss_dssp HSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHH-HHHHT--TCCGGGCSEEEE
T ss_pred hcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHH-HHHHc--CCCcccCCEEEE
Confidence 4668888877555422233667889999999999876666666653 33322 22454 5544 4687643
No 141
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=34.10 E-value=3 Score=34.83 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=52.6
Q ss_pred cceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhh
Q 042199 75 AHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQ 149 (220)
Q Consensus 75 ~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gvcKqQ~i~s~lk~ERkq~VQ 149 (220)
..+|.| +.+-++|-.|-|.-. |+++|.+|.+.|..|-.-|+=++- .-|-.-|..-++.|+.||+..+.
T Consensus 90 eDlyLI-----egdp~~FDdsvf~a~-el~~av~V~~~~rq~RySr~P~~P-lfGraARE~rle~L~~erd~~~e 157 (162)
T 2wmm_A 90 EDLYLI-----EGDPQSFDDSVFSVD-ELEKAVVVKIADRQWRYSRFPEVP-LFGRAARESRIESLHAEREVLSE 157 (162)
T ss_dssp SSEEEE-----ESCTTSCCCCCCCEE-EETTEEEEEEETTEEEEEECCSSC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEe-----cCCCcccchhhhhhH-hhcCceEEEecCceeeeccCCCcc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 357777 366799999999877 999999999999888655443321 34666788889999999998874
No 142
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=34.01 E-value=81 Score=19.23 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=30.4
Q ss_pred EEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeee
Q 042199 49 FVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 49 Fifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
..|.+.| |..+......++++..+++.-+.++.+...++.+ ..+ +||. -|-||++=
T Consensus 7 v~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~---~~~v-~~~Pt~~~ 62 (85)
T 1fo5_A 7 ELFTSPM-CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ-KAM---EYGI-MAVPTIVI 62 (85)
T ss_dssp EEEECCC-SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC-TTT---STTT-CCSSEEEE
T ss_pred EEEeCCC-CCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHH---HCCC-cccCEEEE
Confidence 3455566 5555555555566777776434555555444322 222 2454 37888875
No 143
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=33.98 E-value=54 Score=25.89 Aligned_cols=50 Identities=26% Similarity=0.443 Sum_probs=30.1
Q ss_pred eCCceeeeCC--Cc----------eEEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecC
Q 042199 34 VAPDFIFNCG--GM----------SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT 85 (220)
Q Consensus 34 iaPDfIfn~g--gl----------SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t 85 (220)
-+|||-+.+. |= -|-..|...| |..+. -+..+++|..+|+.- .+||.+|.
T Consensus 34 ~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~-C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~ 96 (215)
T 2i3y_A 34 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATY-CGLTA-QYPELNALQEELKPYGLVVLGFPC 96 (215)
T ss_dssp CGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSS-SGGGG-GHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred CcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCC-CCChH-hHHHHHHHHHHhccCCeEEEEEEc
Confidence 4677766432 32 2444555555 55554 455667787888653 78888874
No 144
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=33.43 E-value=81 Score=19.09 Aligned_cols=51 Identities=8% Similarity=0.082 Sum_probs=30.8
Q ss_pred EeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeee
Q 042199 51 FITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 51 fvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
|-+.| |..+-..-..++++..++..-+.++.+. .....+ +||. -|-||++=
T Consensus 6 f~a~w-C~~C~~~~~~l~~~~~~~~~~~~~~~v~----~~~~~~---~~~v-~~~Pt~~~ 56 (77)
T 1ilo_A 6 IYGTG-CANCQMLEKNAREAVKELGIDAEFEKIK----EMDQIL---EAGL-TALPGLAV 56 (77)
T ss_dssp EECSS-SSTTHHHHHHHHHHHHHTTCCEEEEEEC----SHHHHH---HHTC-SSSSCEEE
T ss_pred EEcCC-ChhHHHHHHHHHHHHHHcCCceEEEEec----CHHHHH---HCCC-CcCCEEEE
Confidence 45567 6666666666677777777556666665 222333 3454 37888874
No 145
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=33.40 E-value=1e+02 Score=20.23 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=29.1
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecC---ccchhhHHHh
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPT---REQNDSFVRS 95 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t---~eq~dsF~~s 95 (220)
+-..|...| |..+......++++..+++++ .++.+.. .++...|.+.
T Consensus 27 ~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 76 (136)
T 1lu4_A 27 AVLWFWTPW-CPFCNAEAPSLSQVAAANPAV-TFVGIATRADVGAMQSFVSK 76 (136)
T ss_dssp EEEEEECTT-CHHHHHHHHHHHHHHHHCTTS-EEEEEECSSCHHHHHHHHHH
T ss_pred EEEEEECCc-ChhHHHHHHHHHHHHHHCCCc-EEEEEEcCCCHHHHHHHHHH
Confidence 444555565 788888888888888888744 3344443 4444555543
No 146
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=32.94 E-value=74 Score=22.05 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=30.6
Q ss_pred EEEEEe-eccCCCchHHHHHHHHHHHHhhcce-EEEE--EecCccchhhHHHh
Q 042199 47 ISFVFI-TNWDCHNTAVVFSRIKKLKEQFAHF-YVVL--ALPTREQNDSFVRS 95 (220)
Q Consensus 47 vAFifv-t~wdc~n~a~ifsRV~kLK~qF~~l-YVVv--tl~t~eq~dsF~~s 95 (220)
+-..|. ..| |..+......++++..+|+.- ..|| ++.+.++...|.+.
T Consensus 39 vvl~F~~a~~-C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 90 (160)
T 1xvw_A 39 VLLVFFPLAF-TGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQ 90 (160)
T ss_dssp EEEEECSCTT-SSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHH
T ss_pred EEEEEECCCC-CCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHh
Confidence 444554 555 888888888999999998531 3333 44445555566654
No 147
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=32.79 E-value=1.3e+02 Score=22.10 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=45.8
Q ss_pred chHHHHHHHHhcccceeeeeeeCCce---eeeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhc----ceEEEEEecC
Q 042199 13 SFINFISSFLSANSFRLNFVLVAPDF---IFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFA----HFYVVLALPT 85 (220)
Q Consensus 13 s~infis~fL~AnS~RLnF~~iaPDf---Ifn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~----~lYVVvtl~t 85 (220)
++.+|+...+....- -..++.+. +.+.+|--+-..|.+.| |..+-....-+++|...++ .-..++.+..
T Consensus 103 ~l~~~l~~~l~~~~~---~~~l~~~~~~~~~~~~~~~~~v~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~ 178 (226)
T 1a8l_A 103 EFAAFLEDIVDVSRE---ETNLMDETKQAIRNIDQDVRILVFVTPT-CPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 178 (226)
T ss_dssp HHHHHHHHHHHHHHT---CCCCCHHHHHHHTTCCSCEEEEEEECSS-CTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG
T ss_pred HHHHHHHHHHhhcCC---CCCCCHHHHHHHHhcCCCcEEEEEeCCC-CCccHHHHHHHHHHHHhcccccCCcEEEEEEEc
Confidence 466777776643221 11122222 33445544466788888 4444444444455666665 2344555543
Q ss_pred ccchhhHHHhHhhhccccCcceeeecC
Q 042199 86 REQNDSFVRSYFKYGMELGRPTFVPVQ 112 (220)
Q Consensus 86 ~eq~dsF~~sYFk~gm~~g~PtfvpV~ 112 (220)
.+ +....+. ||. -|-||++=..
T Consensus 179 ~~-~~~l~~~---~~v-~~~Pt~~~~~ 200 (226)
T 1a8l_A 179 IE-YPEWADQ---YNV-MAVPKIVIQV 200 (226)
T ss_dssp GG-CHHHHHH---TTC-CSSCEEEEEE
T ss_pred cc-CHHHHHh---CCC-cccCeEEEEe
Confidence 32 3333333 343 3789987543
No 148
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=32.54 E-value=1e+02 Score=23.44 Aligned_cols=63 Identities=17% Similarity=0.413 Sum_probs=37.9
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
.+-..|-+.| |..+-.....+++|...++.-..++.+...+. ....+. ||. -|-||++=..+-
T Consensus 32 ~vvv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~l~~~---~~v-~~~Pt~~~~~~G 94 (222)
T 3dxb_A 32 AILVDFWAEW-CGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPK---YGI-RGIPTLLLFKNG 94 (222)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC-TTTGGG---GTC-CSBSEEEEEETT
T ss_pred EEEEEEECCc-CHHHHHHHHHHHHHHHHhcCCcEEEEEECCCC-HHHHHH---cCC-CcCCEEEEEECC
Confidence 4555567888 77666666677777778876445555554432 233332 343 478998766543
No 149
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=32.50 E-value=68 Score=20.88 Aligned_cols=47 Identities=11% Similarity=0.245 Sum_probs=28.7
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecC---ccchhhHHH
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPT---REQNDSFVR 94 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t---~eq~dsF~~ 94 (220)
.+-..|...| |..+......++++..+++++ .++.+.. .++...|.+
T Consensus 27 ~~ll~f~~~~-C~~C~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 76 (136)
T 1zzo_A 27 PAVLWFWAPW-CPTCQGEAPVVGQVAASHPEV-TFVGVAGLDQVPAMQEFVN 76 (136)
T ss_dssp CEEEEEECTT-CHHHHHHHHHHHHHHHHCTTS-EEEEEECSSCHHHHHHHHH
T ss_pred eEEEEEEcCC-ChhHHHHHHHHHHHHHHcCCe-EEEEEeCCCCHHHHHHHHH
Confidence 3445555666 777777778888888888743 3444444 344444444
No 150
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=32.47 E-value=1.1e+02 Score=20.51 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=37.3
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce-EEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+-..|-+.| |..+...-..+++|..++++- ..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 36 vvv~f~a~~-C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~-~~~~~~~---~~v-~~~Pt~~~~~~ 97 (121)
T 2j23_A 36 VVIDFWATW-CGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE-QSQIAQE---VGI-RAMPTFVFFKN 97 (121)
T ss_dssp EEEEEECTT-CSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT-CHHHHHH---HTC-CSSSEEEEEET
T ss_pred EEEEEECCC-CHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC-CHHHHHH---cCC-CcccEEEEEEC
Confidence 334455555 888877777788888888864 4555555443 2333333 453 37899875544
No 151
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=32.15 E-value=1.2e+02 Score=21.01 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=23.4
Q ss_pred EEEEEeeccCCCc-hHHHHHHHHHHHHhhc-----ceEEEEEecC
Q 042199 47 ISFVFITNWDCHN-TAVVFSRIKKLKEQFA-----HFYVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n-~a~ifsRV~kLK~qF~-----~lYVVvtl~t 85 (220)
+-..|...| |.. +......+++|..+|+ .=..||.++.
T Consensus 29 vll~F~~~~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~ 72 (171)
T 2rli_A 29 VLMYFGFTH-CPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITV 72 (171)
T ss_dssp EEEEEECTT-CSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEES
T ss_pred EEEEEEcCC-CCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEE
Confidence 334444555 775 7777788888888884 2345555553
No 152
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=31.31 E-value=1.5e+02 Score=22.08 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=41.9
Q ss_pred CchHHHHHHHHhcccceeeeeeeCC---ceeeeCCCceEEE-EEeecc--CCCchHHHHHHHHHHHHhhcceEEEEEecC
Q 042199 12 PSFINFISSFLSANSFRLNFVLVAP---DFIFNCGGMSISF-VFITNW--DCHNTAVVFSRIKKLKEQFAHFYVVLALPT 85 (220)
Q Consensus 12 ps~infis~fL~AnS~RLnF~~iaP---DfIfn~gglSvAF-ifvt~w--dc~n~a~ifsRV~kLK~qF~~lYVVvtl~t 85 (220)
.++.+|+...+...+-- ..+.+ +-+.+..| .+.+ .|.+.| .|....+.+. +|...+.++ .++.+..
T Consensus 104 ~~l~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~-~~~~v~F~a~wC~~C~~~~~~~~---~~~~~~~~v-~~~~vd~ 175 (229)
T 2ywm_A 104 LEFTTLINGIFHVSQRK---PQLSEKTLELLQVVDI-PIEIWVFVTTSCGYCPSAAVMAW---DFALANDYI-TSKVIDA 175 (229)
T ss_dssp THHHHHHHHHHHHHTTC---CSCCHHHHHHHTTCCS-CEEEEEEECTTCTTHHHHHHHHH---HHHHHCTTE-EEEEEEG
T ss_pred HHHHHHHHHHHhccCCc---cCCCHHHHHHHHhcCC-CeEEEEEECCCCcchHHHHHHHH---HHHHHCCCe-EEEEEEC
Confidence 35677777766533221 11111 11333444 3444 488888 4555555554 455556543 3444443
Q ss_pred ccchhhHHHhHhhhccccCcceeee
Q 042199 86 REQNDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 86 ~eq~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
.+ +....+ +||. -|-||++=
T Consensus 176 ~~-~~~l~~---~~~v-~~~Pt~~~ 195 (229)
T 2ywm_A 176 SE-NQDLAE---QFQV-VGVPKIVI 195 (229)
T ss_dssp GG-CHHHHH---HTTC-CSSSEEEE
T ss_pred CC-CHHHHH---HcCC-cccCEEEE
Confidence 32 223333 3444 36788774
No 153
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=30.99 E-value=1.1e+02 Score=21.29 Aligned_cols=66 Identities=9% Similarity=0.226 Sum_probs=41.5
Q ss_pred CCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhcccc-CcceeeecCC
Q 042199 42 CGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMEL-GRPTFVPVQD 113 (220)
Q Consensus 42 ~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~-g~PtfvpV~d 113 (220)
.+++.|.+.|... |..+-++-..+.++-.+|+.=..++.+.+.+. .... . +||+.- .-||++=..+
T Consensus 21 ~~~~pv~v~f~a~--~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~-~~~a-~--~~gi~~~~iPtl~i~~~ 87 (133)
T 2djk_A 21 SAGIPLAYIFAET--AEERKELSDKLKPIAEAQRGVINFGTIDAKAF-GAHA-G--NLNLKTDKFPAFAIQEV 87 (133)
T ss_dssp HTTSCEEEEECSC--SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTT-GGGT-T--TTTCCSSSSSEEEEECT
T ss_pred cCCCCEEEEEecC--hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHh-HHHH-H--HcCCCcccCCEEEEEec
Confidence 4566777777666 56666777777888888876556666665543 3322 2 245543 3698876654
No 154
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.35 E-value=1.2e+02 Score=20.16 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=32.5
Q ss_pred eEEEEEeeccCCCchHHHHHHH---HHHHHhhcceEEEEEecCcc-chhhHHHhHhhhccccCcceeeec
Q 042199 46 SISFVFITNWDCHNTAVVFSRI---KKLKEQFAHFYVVLALPTRE-QNDSFVRSYFKYGMELGRPTFVPV 111 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV---~kLK~qF~~lYVVvtl~t~e-q~dsF~~sYFk~gm~~g~PtfvpV 111 (220)
.+-..|-..| |..+-..-..+ .+++..+..-++++.+...+ ++..+.+.| |. -|-||++=+
T Consensus 29 ~vlv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~---~v-~~~Pt~~~~ 93 (130)
T 2kuc_A 29 LLFVDCFTTW-CGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKY---GV-HAYPTLLFI 93 (130)
T ss_dssp CEEEEECCTT-CTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHT---TC-CSSCEEEEE
T ss_pred eEEEEEECCC-CccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHc---CC-CCCCEEEEE
Confidence 3445566777 55554433333 44554444445566665543 444555543 43 467888765
No 155
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=29.68 E-value=1.3e+02 Score=20.40 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=38.6
Q ss_pred CceEEEEEeec-------cCCCchHHHHHHHHHHHHhhcceEEEEEecCc------cchhhHHHhHhhhccccCcceeee
Q 042199 44 GMSISFVFITN-------WDCHNTAVVFSRIKKLKEQFAHFYVVLALPTR------EQNDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 44 glSvAFifvt~-------wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~------eq~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
|-.+-..|-+. | |..+.....-+++|..+++.-.+++.+... +.+..+.+. ||. -|-||++=
T Consensus 24 ~~~v~v~F~a~~~~~~~~w-C~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~---~~i-~~~Pt~~~ 98 (123)
T 1wou_A 24 GKTIFAYFTGSKDAGGKSW-CPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKN---LKV-TAVPTLLK 98 (123)
T ss_dssp TSEEEEEEECCBCTTCCBS-CHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHH---HCC-CSSSEEEE
T ss_pred CCEEEEEEEccCCCCCCCc-CHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHH---CCC-CeeCEEEE
Confidence 44555667777 8 444444444456667777644666666662 334445544 454 47899987
Q ss_pred cCC
Q 042199 111 VQD 113 (220)
Q Consensus 111 V~d 113 (220)
..+
T Consensus 99 ~~~ 101 (123)
T 1wou_A 99 YGT 101 (123)
T ss_dssp TTS
T ss_pred EcC
Confidence 765
No 156
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=29.19 E-value=51 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=35.3
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|+|++|+....+.- ..-++-|++.++ |...-.-..++|++.|...|+
T Consensus 70 ~V~i~tp~~~h~~~~-----~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~ 119 (329)
T 3evn_A 70 VIYVATINQDHYKVA-----KAALLAGKHVLVEKPFTLTYDQANELFALAESCNL 119 (329)
T ss_dssp EEEECSCGGGHHHHH-----HHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTC
T ss_pred EEEECCCcHHHHHHH-----HHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCC
Confidence 577888887665443 344678899888 655555577899999998886
No 157
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=29.18 E-value=29 Score=29.41 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHhhh-----hccceeEEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHH
Q 042199 133 RQDAISKLKAERRRAV-----QTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRF 207 (220)
Q Consensus 133 qQ~i~s~lk~ERkq~V-----Q~md~flrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rf 207 (220)
.+++.+++...++|++ -|.|. +.+||||----|-.|.+.-||+|.|-++-.+. |. .+|.+.+.
T Consensus 211 ~~~v~~~~gl~~~q~id~~~L~GsD~----ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~~------l~--~~~~l~~i 278 (336)
T 1rxw_A 211 LESNLKRLGLTREQLIDIAILVGTDY----NEGVKGVGVKKALNYIKTYGDIFRALKALKVN------ID--HVEEIRNF 278 (336)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCBTT----BCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC------------CHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHhhcCCCC----CCCCCCcCHHHHHHHHHHcCCHHHHHHhCCCC------Cc--cHHHHHHH
Confidence 4567777777788875 46663 34899999999999999999999986653322 21 24588899
Q ss_pred hcCCccc
Q 042199 208 FRDPKLY 214 (220)
Q Consensus 208 frDp~~y 214 (220)
|+||...
T Consensus 279 ~~~~~v~ 285 (336)
T 1rxw_A 279 FLNPPVT 285 (336)
T ss_dssp HHSCCCC
T ss_pred HhCCCCC
Confidence 9998754
No 158
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=28.90 E-value=1.6e+02 Score=22.49 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcc---eEEEEEecCc-cchhhHHHhHhhhccccCcceeeecCC
Q 042199 42 CGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAH---FYVVLALPTR-EQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 42 ~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~---lYVVvtl~t~-eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+.|-.+...|-+.| |..+-..-..+++|..+++. -..++.+... +++....+. ||. -|-||++=..+
T Consensus 28 ~~~~~vlv~F~a~w-C~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~---~~v-~~~Pt~~~~~~ 98 (244)
T 3q6o_A 28 GSRSAWAVEFFASW-CGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRD---FNI-PGFPTVRFFXA 98 (244)
T ss_dssp SCSSEEEEEEECTT-CHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHH---TTC-CSSSEEEEECT
T ss_pred hCCCeEEEEEECCc-CHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHH---cCC-CccCEEEEEeC
Confidence 34445666788888 55555555555666667765 4556666653 345555554 343 37788877664
No 159
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=28.56 E-value=56 Score=26.39 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=32.2
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
.|++++|+....+... --++-|++.++ |+.......++|++.|...|+
T Consensus 66 ~V~i~tp~~~h~~~~~-----~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~ 115 (323)
T 1xea_A 66 AVMIHAATDVHSTLAA-----FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQ 115 (323)
T ss_dssp EEEECSCGGGHHHHHH-----HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred EEEEECCchhHHHHHH-----HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCC
Confidence 4677777665544333 34677888877 554444567889999998885
No 160
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=28.38 E-value=26 Score=24.81 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=31.4
Q ss_pred eeccCCCCccChhHHHHhh---hhHHHHHhhhhhhhhhccCCChhhHHHHHH
Q 042199 158 VTSIPLIDNHDANALNQAI---GSIEAIAKASKTYILENTDLSAEKAEMIVR 206 (220)
Q Consensus 158 vTSIP~id~HDAn~L~QaI---GSieAIakaSke~IlenTDLS~dkAE~i~r 206 (220)
+++||||...-|..+.+.- |.. +|.+++.+-..++..+||.|.+
T Consensus 42 L~~ipGIG~~~A~~Il~~r~~~g~f-----~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWRELHGPF-----SQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCC-----SSGGGGGGSTTCCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCc-----CCHHHHHhCCCCCHHHHHHHHH
Confidence 4778999887777777664 333 5666676666788888888754
No 161
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=28.19 E-value=2e+02 Score=21.97 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=39.8
Q ss_pred eeCCceeee---CC-CceEE-------EEEeeccC---CCchHHHHHHHHHHHHhhcce-EEEEEec--CccchhhHHHh
Q 042199 33 LVAPDFIFN---CG-GMSIS-------FVFITNWD---CHNTAVVFSRIKKLKEQFAHF-YVVLALP--TREQNDSFVRS 95 (220)
Q Consensus 33 ~iaPDfIfn---~g-glSvA-------Fifvt~wd---c~n~a~ifsRV~kLK~qF~~l-YVVvtl~--t~eq~dsF~~s 95 (220)
.-+|||-+. +| |-.+. .+++.-|- |..+..-+.++++|..+|+.- ..||.++ +.+....|.+.
T Consensus 44 ~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~ 123 (222)
T 3ztl_A 44 RPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNL 123 (222)
T ss_dssp EECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHS
T ss_pred CCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
Confidence 457888885 43 11111 23333343 888888888899999888642 3444444 44456677766
Q ss_pred Hhhh
Q 042199 96 YFKY 99 (220)
Q Consensus 96 YFk~ 99 (220)
|=++
T Consensus 124 ~~~~ 127 (222)
T 3ztl_A 124 DRKS 127 (222)
T ss_dssp CGGG
T ss_pred hhhh
Confidence 5443
No 162
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=28.10 E-value=1.2e+02 Score=22.42 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=26.4
Q ss_pred CCCchHHHHHHHHHHHHhhcce-EEEEEecC--ccchhhHHHhH
Q 042199 56 DCHNTAVVFSRIKKLKEQFAHF-YVVLALPT--REQNDSFVRSY 96 (220)
Q Consensus 56 dc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t--~eq~dsF~~sY 96 (220)
.|..+......+++|..+|+.- ..||.++. .+....|.+.|
T Consensus 46 ~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 89 (197)
T 1qmv_A 46 FTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTP 89 (197)
T ss_dssp TSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
Confidence 3888877888888888888542 34444444 44455566655
No 163
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=27.82 E-value=34 Score=28.43 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=34.0
Q ss_pred eeccCCCCccChhHHHHhhhh---HHHHHhhhhhhhhhccCCChhhHHHHHHHhcC
Q 042199 158 VTSIPLIDNHDANALNQAIGS---IEAIAKASKTYILENTDLSAEKAEMIVRFFRD 210 (220)
Q Consensus 158 vTSIP~id~HDAn~L~QaIGS---ieAIakaSke~IlenTDLS~dkAE~i~rffrD 210 (220)
+.|||||-..=|-++....|. .+||.....+.+.+=-.+...+||.|.-=++|
T Consensus 90 L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 90 LLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred hcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 445666666666666666666 55566666666666666666666666665555
No 164
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=27.34 E-value=1.3e+02 Score=22.24 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=29.1
Q ss_pred EEEEe-eccCCCchHHHHHHHHHHHHhhcce-EEEEEecC--ccchhhHHHhH
Q 042199 48 SFVFI-TNWDCHNTAVVFSRIKKLKEQFAHF-YVVLALPT--REQNDSFVRSY 96 (220)
Q Consensus 48 AFifv-t~wdc~n~a~ifsRV~kLK~qF~~l-YVVvtl~t--~eq~dsF~~sY 96 (220)
-..|. .. .|..+-....++++|..+|+.- ..||.++. .+....|.+.+
T Consensus 40 vl~F~~~~-~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~ 91 (202)
T 1uul_A 40 VLFFYPMD-FTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIE 91 (202)
T ss_dssp EEEECSCT-TCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSC
T ss_pred EEEEECCC-CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 33444 34 4778878888888888888542 34445544 44455566554
No 165
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=26.35 E-value=56 Score=26.21 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=26.6
Q ss_pred HHhhhhHHHHHhhhhhhhhh---ccCCChhhHHHHHHHh
Q 042199 173 NQAIGSIEAIAKASKTYILE---NTDLSAEKAEMIVRFF 208 (220)
Q Consensus 173 ~QaIGSieAIakaSke~Ile---nTDLS~dkAE~i~rff 208 (220)
.+...++|+||+++-+.+.+ ...++ .||+.|.+.-
T Consensus 56 ~~~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a 93 (225)
T 1kg2_A 56 MARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAA 93 (225)
T ss_dssp HHHCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHH
T ss_pred HHHCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHH
Confidence 34567889999999888764 67888 5998887653
No 166
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=25.81 E-value=1.6e+02 Score=21.68 Aligned_cols=62 Identities=13% Similarity=0.321 Sum_probs=34.3
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcce---EEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHF---YVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~l---YVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.+-.-|-+.| |..+-.....+.+|...++.. .+++.+...++ ..+.+. ||.. |-||++=..+
T Consensus 34 ~v~v~F~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~---~~v~-~~Pt~~~~~~ 98 (241)
T 3idv_A 34 TVLLEFYAPW-CGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA-SVLASR---FDVS-GYPTIKILKK 98 (241)
T ss_dssp EEEEEEECTT-CHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC-HHHHHH---TTCC-SSSEEEEEET
T ss_pred eEEEEEECCC-CHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC-HHHHHh---cCCC-cCCEEEEEcC
Confidence 3555667777 665555555556666666553 44555554333 334433 4543 6788876543
No 167
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=25.74 E-value=1.3e+02 Score=19.15 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=35.0
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+-..|-+.| |..+......++++...+++ ..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 29 ~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~-~~~~~~~---~~v-~~~Pt~~~~~~ 88 (113)
T 1ti3_A 29 IVVDFTASW-CPPCKMIAPIFAELAKKFPN-VTFLKVDVDE-LKAVAEE---WNV-EAMPTFIFLKD 88 (113)
T ss_dssp EEEEEECSS-CHHHHHHHHHHHHHHHHCSS-EEEEEEETTT-CHHHHHH---HHC-SSTTEEEEEET
T ss_pred EEEEEECCC-CHHHHHHHHHHHHHHHhCCC-cEEEEEEccc-cHHHHHh---CCC-CcccEEEEEeC
Confidence 334455555 77777777777788888876 4445555433 3334333 343 37888865433
No 168
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=25.34 E-value=66 Score=26.61 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=35.9
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|+|++|+..+.+.- ..-++-||+.++ |...---..++|++.|...|+
T Consensus 92 ~V~i~tp~~~h~~~~-----~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~ 141 (350)
T 3rc1_A 92 AVYVPLPAVLHAEWI-----DRALRAGKHVLAEKPLTTDRPQAERLFAVARERGL 141 (350)
T ss_dssp EEEECCCGGGHHHHH-----HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred EEEECCCcHHHHHHH-----HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 577788887765543 345678899888 766666678999999999886
No 169
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=24.83 E-value=1.7e+02 Score=20.13 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=25.8
Q ss_pred EEEEEeeccCCCc-hHHHHHHHHHHHHhhcce----EEEEEecC
Q 042199 47 ISFVFITNWDCHN-TAVVFSRIKKLKEQFAHF----YVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n-~a~ifsRV~kLK~qF~~l----YVVvtl~t 85 (220)
+-..|...| |.. +......+++|..+|+.- ..||.++.
T Consensus 38 vll~f~~~~-C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~ 80 (172)
T 2k6v_A 38 VLLFFGFTR-CPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSV 80 (172)
T ss_dssp EEEEEECTT-CSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEES
T ss_pred EEEEEECCC-CcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEE
Confidence 334444554 775 778888888999999842 56667764
No 170
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=24.56 E-value=1.8e+02 Score=23.67 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhcceEEEEEe--cCccch--hhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhhhhhhhh
Q 042199 61 AVVFSRIKKLKEQFAHFYVVLAL--PTREQN--DSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDA 136 (220)
Q Consensus 61 a~ifsRV~kLK~qF~~lYVVvtl--~t~eq~--dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gvcKqQ~i 136 (220)
..+|.=|+++|++++++-+++-. ..-.++ +.|.+.-..-|.+. ..+|-...|- .+..++.++.+|..--.=+
T Consensus 79 ~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dg---vii~dl~~ee-~~~~~~~~~~~gl~~i~l~ 154 (262)
T 2ekc_A 79 EDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDG---FIVPDLPPEE-AEELKAVMKKYVLSFVPLG 154 (262)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCE---EECTTCCHHH-HHHHHHHHHHTTCEECCEE
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCE---EEECCCCHHH-HHHHHHHHHHcCCcEEEEe
Confidence 45667788888887455555521 111121 55666666666552 3333222221 4455666666653110001
Q ss_pred HHHHHHHH-HhhhhccceeEEeeeccCCC
Q 042199 137 ISKLKAER-RRAVQTMDVFLRVVTSIPLI 164 (220)
Q Consensus 137 ~s~lk~ER-kq~VQ~md~flrvvTSIP~i 164 (220)
......|| +++.+..+-|+-+| |++|.
T Consensus 155 ~p~t~~~rl~~ia~~a~gfiy~v-s~~g~ 182 (262)
T 2ekc_A 155 APTSTRKRIKLICEAADEMTYFV-SVTGT 182 (262)
T ss_dssp CTTCCHHHHHHHHHHCSSCEEEE-SSCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEE-ecCCc
Confidence 11122233 34444445566555 44543
No 171
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=24.30 E-value=73 Score=25.69 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.0
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|++++|+..+.+.-. .-++-|++.++ |+..-.-..++|++.|...|+
T Consensus 66 ~V~i~tp~~~h~~~~~-----~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 115 (331)
T 4hkt_A 66 AVVICTPTDTHADLIE-----RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKA 115 (331)
T ss_dssp EEEECSCGGGHHHHHH-----HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCchhHHHHHH-----HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4677888876655433 34677899887 665556677899999999885
No 172
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=24.11 E-value=1.5e+02 Score=19.14 Aligned_cols=62 Identities=11% Similarity=0.239 Sum_probs=32.2
Q ss_pred eEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 46 SISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 46 SvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
.+-..|-+.| |..+...-..+++|...+.+ ..++.+...+ +....+. ||. -|-||++=..+-
T Consensus 20 ~vlv~f~a~w-C~~C~~~~p~~~~~~~~~~~-~~~~~vd~~~-~~~l~~~---~~v-~~~Pt~~~~~~G 81 (105)
T 4euy_A 20 LVLLFIKTEN-CGVCDVMLRKVNYVLENYNY-VEKIEILLQD-MQEIAGR---YAV-FTGPTVLLFYNG 81 (105)
T ss_dssp EEEEEEEESS-CHHHHHHHHHHHHHHHTCTT-EEEEEEEECC-C-------------CCCCEEEEEETT
T ss_pred CEEEEEeCCC-CcchHHHHHHHHHHHHHcCC-ceEEEEECCC-CHHHHHh---cCC-CCCCEEEEEeCC
Confidence 3555566777 66666666666777777866 3444554433 3333333 343 367888765443
No 173
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=23.42 E-value=78 Score=25.78 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=34.7
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|+|++|+..+.+.-. .-++-|++.++ |...-.-..++|++.|...|+
T Consensus 70 ~V~i~tp~~~h~~~~~-----~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~ 119 (330)
T 3e9m_A 70 IIYIPTYNQGHYSAAK-----LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV 119 (330)
T ss_dssp EEEECCCGGGHHHHHH-----HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCHHHHHHHH-----HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 4778888877655433 34677888887 655555567899999998885
No 174
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=23.39 E-value=2.1e+02 Score=20.52 Aligned_cols=61 Identities=8% Similarity=0.073 Sum_probs=36.9
Q ss_pred CCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceee
Q 042199 43 GGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFV 109 (220)
Q Consensus 43 gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv 109 (220)
.|-.|-.-|-+.| |..+.....-+.+|..++++-..++.+... ++..+.+.| |. -|-||++
T Consensus 22 ~~k~vlv~F~a~W-C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d-~~~~l~~~~---~v-~~~Pt~~ 82 (149)
T 3gix_A 22 AEKVLVLRFGRDE-DPVCLQLDDILSKTSSDLSKMAAIYLVDVD-QTAVYTQYF---DI-SYIPSTV 82 (149)
T ss_dssp CSSEEEEEEECTT-SHHHHHHHHHHHHHHTTTTTTEEEEEEETT-TCCHHHHHT---TC-CSSSEEE
T ss_pred CCCEEEEEEECCC-CHHHHHHHHHHHHHHHHccCceEEEEEECC-cCHHHHHHc---CC-CccCeEE
Confidence 3444555677788 555555555566777788775666666653 344455443 32 3778887
No 175
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.21 E-value=1.7e+02 Score=19.47 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=38.0
Q ss_pred CCCceEEEEEeeccCCCchHHHHHHHHHHHHhhc--ceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 42 CGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFA--HFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 42 ~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~--~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+.|-.+-..|-+.| |..+......+++|..+++ .-.+++.+...+. +...+ +||. -|-||++=+.+
T Consensus 23 ~~~~~vlv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~---~~~v-~~~Pt~~~~~~ 90 (133)
T 2dj3_A 23 DPKKDVLIEFYAPW-CGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN-DITND---QYKV-EGFPTIYFAPS 90 (133)
T ss_dssp CTTSEEEEEECCTT-CSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS-CCCCS---SCCC-SSSSEEEEECT
T ss_pred cCCCcEEEEEECCC-ChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC-HHHHh---hcCC-CcCCEEEEEeC
Confidence 33445556666777 7777776667777777776 2345556654332 22222 2443 36788875543
No 176
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=23.07 E-value=1.8e+02 Score=19.78 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=35.4
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
+-..|-+.| |..+......+++|..++++ ..++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 41 vvv~f~a~w-C~~C~~~~~~l~~l~~~~~~-v~~~~vd~d~-~~~l~~~---~~v-~~~Pt~~~~~~ 100 (124)
T 1xfl_A 41 VVVDFTASW-CGPCRFIAPFFADLAKKLPN-VLFLKVDTDE-LKSVASD---WAI-QAMPTFMFLKE 100 (124)
T ss_dssp EEEEEECTT-CHHHHHHHHHHHHHHHHCSS-EEEEEEETTT-SHHHHHH---TTC-CSSSEEEEEET
T ss_pred EEEEEECCC-CHHHHHHHHHHHHHHHHCCC-cEEEEEECcc-CHHHHHH---cCC-CccCEEEEEEC
Confidence 334455666 66666666667778888876 4555565543 3334443 443 37899875544
No 177
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=22.79 E-value=2.2e+02 Score=21.35 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=7.8
Q ss_pred cCCCCccChhHHHH
Q 042199 161 IPLIDNHDANALNQ 174 (220)
Q Consensus 161 IP~id~HDAn~L~Q 174 (220)
.+||+..|+..+.+
T Consensus 165 ~gGI~~~~~~~~~~ 178 (211)
T 3f4w_A 165 AGGISSQTVKDYAL 178 (211)
T ss_dssp ESSCCTTTHHHHHT
T ss_pred ECCCCHHHHHHHHH
Confidence 45665555555555
No 178
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=22.76 E-value=1.6e+02 Score=20.94 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=31.1
Q ss_pred CceEEEEEe-eccC--CCchHHHHHHHHHHHHhhcceEEEEEecCccc----------hhhHHHhHhhhccccCcceeee
Q 042199 44 GMSISFVFI-TNWD--CHNTAVVFSRIKKLKEQFAHFYVVLALPTREQ----------NDSFVRSYFKYGMELGRPTFVP 110 (220)
Q Consensus 44 glSvAFifv-t~wd--c~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq----------~dsF~~sYFk~gm~~g~Ptfvp 110 (220)
|--|-..|- +.|- |....+.+....+++..+..=+++|.+...+. +..+.+. ||. -|-||++=
T Consensus 47 gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~---~~v-~~~Pt~~~ 122 (154)
T 2ju5_A 47 HKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQ---YKV-TGFPELVF 122 (154)
T ss_dssp CCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHH---TTC-CSSSEEEE
T ss_pred CCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHH---cCC-CCCCEEEE
Confidence 334555566 6772 44445555111444444422345555554432 2334433 343 36788876
Q ss_pred c
Q 042199 111 V 111 (220)
Q Consensus 111 V 111 (220)
+
T Consensus 123 ~ 123 (154)
T 2ju5_A 123 I 123 (154)
T ss_dssp E
T ss_pred E
Confidence 6
No 179
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.42 E-value=1.8e+02 Score=19.51 Aligned_cols=62 Identities=15% Similarity=0.342 Sum_probs=34.7
Q ss_pred EEEEEeeccCCCchHHHHHHHHHHHHhhcce---EEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKKLKEQFAHF---YVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~kLK~qF~~l---YVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
+-..|-+.| |..+......+++|..++++- .+++.+...+. ..+.+ +||.. |-||++=..+-
T Consensus 37 vlv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~---~~~v~-~~Pt~~~~~~G 101 (140)
T 2dj1_A 37 VLLEFYAPW-CGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA-SMLAS---KFDVS-GYPTIKILKKG 101 (140)
T ss_dssp EEEEECCTT-CHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC-HHHHH---HTTCC-SSSEEEEEETT
T ss_pred EEEEEECCC-CHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc-HHHHH---HCCCC-ccCeEEEEECC
Confidence 444566666 555554444555566666653 55666655443 33433 34543 78998876543
No 180
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=22.35 E-value=84 Score=25.12 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=31.0
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
.|++++|+..+.+... .-++-|++.++ |..--.-..++|++.|...|+
T Consensus 65 ~V~i~tp~~~h~~~~~-----~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~ 114 (332)
T 2glx_A 65 AVYVSTTNELHREQTL-----AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV 114 (332)
T ss_dssp EEEECSCGGGHHHHHH-----HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred EEEEeCChhHhHHHHH-----HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence 5777777765544333 34667888776 333333456889999988875
No 181
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=27.81 E-value=19 Score=25.18 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEEeeccCCCchHHHHHHHHH-HHHhhc--ceEEEEEecC
Q 042199 47 ISFVFITNWDCHNTAVVFSRIKK-LKEQFA--HFYVVLALPT 85 (220)
Q Consensus 47 vAFifvt~wdc~n~a~ifsRV~k-LK~qF~--~lYVVvtl~t 85 (220)
+-..|...| |..+......+++ |..+++ .=+.||.++.
T Consensus 36 vll~f~a~~-C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~ 76 (159)
T 2ls5_A 36 VMLQFTASW-CGVCRKEMPFIEKDIWLKHKDNADFALIGIDR 76 (159)
Confidence 444455666 5555555555555 555555 2344555553
No 182
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=22.12 E-value=26 Score=23.19 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.6
Q ss_pred CCchHHHHHHHHhcc
Q 042199 11 HPSFINFISSFLSAN 25 (220)
Q Consensus 11 ~ps~infis~fL~An 25 (220)
.||+-||+.++++..
T Consensus 3 TpSL~nFl~Sl~aG~ 17 (39)
T 3arc_X 3 TPSLKGFFIGLLSGA 17 (39)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 599999999998753
No 183
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=22.11 E-value=1.7e+02 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=24.3
Q ss_pred ccchhhHHHhH----hhhccccCc-ceeeecCCcchhHHHHHHH
Q 042199 86 REQNDSFVRSY----FKYGMELGR-PTFVPVQDREMGFEKIIKI 124 (220)
Q Consensus 86 ~eq~dsF~~sY----Fk~gm~~g~-PtfvpV~d~eMgfEkivkI 124 (220)
.++.+.|.+.. =..||.++. |.+....+.+-..|.+++-
T Consensus 27 ~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~ 70 (138)
T 3luc_A 27 EVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRH 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHH
Confidence 44566777666 567999986 5555544444455666553
No 184
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=21.92 E-value=1.4e+02 Score=20.56 Aligned_cols=67 Identities=16% Similarity=0.365 Sum_probs=37.9
Q ss_pred CCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCc
Q 042199 42 CGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDR 114 (220)
Q Consensus 42 ~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~ 114 (220)
..|-.+-..|-+.| |..+......+++|...++.-..++.+...+. ..+.+. ||. -|-||++=+.+-
T Consensus 38 ~~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~---~~v-~~~Pt~~~~~~G 104 (128)
T 2o8v_B 38 KADGAILVDFWAEW-CGPAKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPK---YGI-RGIPTLLLFKNG 104 (128)
T ss_dssp TCSSEEEEEEECSS-CHHHHHTHHHHHHHHHHTTTTEEEEEEETTTC-CTTSGG---GTC-CSSSEEEEEETT
T ss_pred hcCCEEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC-HHHHHH---cCC-CccCEEEEEeCC
Confidence 34445556667777 66665555556677777764355666655433 223332 332 367888765443
No 185
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=21.71 E-value=86 Score=25.51 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=34.2
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|+|++|+..+.+--. .-++-|++.++ |...-.-..++|++.|...|+
T Consensus 69 ~V~i~tp~~~h~~~~~-----~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~ 118 (344)
T 3mz0_A 69 AVLVTSWGPAHESSVL-----KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK 118 (344)
T ss_dssp EEEECSCGGGHHHHHH-----HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred EEEECCCchhHHHHHH-----HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence 4777888776655443 34677888887 655555567899999998876
No 186
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=21.69 E-value=88 Score=25.33 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|+|++|+..+.+- -+.-++-||+.++ |+..-.-..++|++.|..+|+
T Consensus 69 ~V~i~tp~~~H~~~-----~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~ 118 (334)
T 3ohs_X 69 VAYVGTQHPQHKAA-----VMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGL 118 (334)
T ss_dssp EEEECCCGGGHHHH-----HHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred EEEECCCcHHHHHH-----HHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 36777787766443 3335678899887 665566678899999999885
No 187
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=21.46 E-value=78 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=23.9
Q ss_pred hHHHHHhhhhhhhhhccCCChhhHHHHHHH
Q 042199 178 SIEAIAKASKTYILENTDLSAEKAEMIVRF 207 (220)
Q Consensus 178 SieAIakaSke~IlenTDLS~dkAE~i~rf 207 (220)
++|+|+.++-|.+ ....++--||+.|...
T Consensus 97 tpe~la~~~~e~L-r~~Gl~~~Ka~~l~~~ 125 (232)
T 4b21_A 97 TPKQIMETDVETL-HECGFSKLKSQEIHIV 125 (232)
T ss_dssp CHHHHHTSCHHHH-HTTTCCHHHHHHHHHH
T ss_pred CHHHHHcCCHHHH-HHcCCcHHHHHHHHHH
Confidence 7899999998875 5689999999987654
No 188
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=21.41 E-value=1.7e+02 Score=18.79 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=34.3
Q ss_pred EEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccCcceeeecCC
Q 042199 50 VFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQD 113 (220)
Q Consensus 50 ifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d 113 (220)
.|-+. .|..+......+++|...++++. ++.+...+ +..+.+. ||. -|-||++=..+
T Consensus 34 ~f~~~-~C~~C~~~~~~l~~~~~~~~~~~-~~~v~~~~-~~~~~~~---~~v-~~~Pt~~~~~~ 90 (118)
T 2vm1_A 34 DFTAS-WCGPCRVIAPVFAEYAKKFPGAI-FLKVDVDE-LKDVAEA---YNV-EAMPTFLFIKD 90 (118)
T ss_dssp EEECT-TCHHHHHHHHHHHHHHHHCTTSE-EEEEETTT-SHHHHHH---TTC-CSBSEEEEEET
T ss_pred EEECC-CCHhHHHHhHHHHHHHHHCCCcE-EEEEEccc-CHHHHHH---cCC-CcCcEEEEEeC
Confidence 34444 48888777777888888887643 44444433 3333333 443 37899876544
No 189
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=21.32 E-value=85 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=35.4
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
.|+|++|+..+.+.-. --++-|++.++ |..--.-..++|++.|...|+
T Consensus 69 ~V~i~tp~~~h~~~~~-----~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~ 118 (354)
T 3db2_A 69 MVIITVPNDKHAEVIE-----QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGV 118 (354)
T ss_dssp EEEECSCTTSHHHHHH-----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCC
T ss_pred EEEEeCChHHHHHHHH-----HHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence 5788888877765443 34678899888 655555567899999998876
No 190
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.88 E-value=2e+02 Score=19.38 Aligned_cols=113 Identities=9% Similarity=0.127 Sum_probs=62.1
Q ss_pred ccCCchHHHHHHHHhc-ccceeee-ee-----------eCCceeeeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhc
Q 042199 9 EQHPSFINFISSFLSA-NSFRLNF-VL-----------VAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFA 75 (220)
Q Consensus 9 ~q~ps~infis~fL~A-nS~RLnF-~~-----------iaPDfIfn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~ 75 (220)
+.+|.+...+...|.. ..|..-. .. -.||+|+-. |+... ..-+.-+++||..++
T Consensus 12 dd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D------------~~l~~-~~g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 12 DDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMD------------LTLPG-PGGIEATRHIRQWDG 78 (153)
T ss_dssp CSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEEC------------SCCSS-SCHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEe------------cCCCC-CCHHHHHHHHHHhCC
Confidence 4567777888888876 5665431 11 135655443 33221 112455667777777
Q ss_pred ceEEEEEecCccchhhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhhhhhhhhHHHH
Q 042199 76 HFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKL 140 (220)
Q Consensus 76 ~lYVVvtl~t~eq~dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gvcKqQ~i~s~l 140 (220)
+.-||+.....+ .......++. |.-.|++-+-..-.+...++-+..+...-...+...+
T Consensus 79 ~~~ii~ls~~~~--~~~~~~~~~~----g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~l 137 (153)
T 3cz5_A 79 AARILIFTMHQG--SAFALKAFEA----GASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEI 137 (153)
T ss_dssp TCCEEEEESCCS--HHHHHHHHHT----TCSEEEETTSCTTHHHHHHHHHTTTCCEECHHHHHHH
T ss_pred CCeEEEEECCCC--HHHHHHHHHC----CCcEEEecCCCHHHHHHHHHHHHhCCccCChHHHHHH
Confidence 877766544332 2333444444 4445665554444566777666666555555555554
No 191
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=20.73 E-value=95 Score=25.59 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=36.0
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|+|+.|+..+.+ +-..-++-||+.++ |...-.-..++|++.|...|+
T Consensus 86 ~V~i~tp~~~h~~-----~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~ 135 (383)
T 3oqb_A 86 MFFDAATTQARPG-----LLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGV 135 (383)
T ss_dssp EEEECSCSSSSHH-----HHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred EEEECCCchHHHH-----HHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 3677788765543 44556788999998 776666678899999999886
No 192
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=20.06 E-value=1.1e+02 Score=25.17 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=31.8
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|++++|+..+.+- -..-++-|++.++ |...-.-..++|++.|...|+
T Consensus 74 ~V~i~tp~~~h~~~-----~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~ 123 (362)
T 1ydw_A 74 ALYVPLPTSLHVEW-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 123 (362)
T ss_dssp EEEECCCGGGHHHH-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred EEEEcCChHHHHHH-----HHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 46677777655433 3334677888776 444334457899999998886
No 193
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=20.05 E-value=1.1e+02 Score=24.70 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
-|++++|+..+.+--. .-++-|++.++ |...-.-..++|++.|...|+
T Consensus 68 ~V~i~tp~~~h~~~~~-----~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 117 (344)
T 3euw_A 68 GIVIGSPTSTHVDLIT-----RAVERGIPALCEKPIDLDIEMVRACKEKIGDGAS 117 (344)
T ss_dssp EEEECSCGGGHHHHHH-----HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred EEEEeCCchhhHHHHH-----HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 4777788776655433 34677888887 654445567889999998885
No 194
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=20.05 E-value=91 Score=25.55 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=35.5
Q ss_pred EEEEEecCccchhhHHHhHhhhccccCcceee--ecCCcchhHHHHHHHHHhhhh
Q 042199 78 YVVLALPTREQNDSFVRSYFKYGMELGRPTFV--PVQDREMGFEKIIKIAHSRGV 130 (220)
Q Consensus 78 YVVvtl~t~eq~dsF~~sYFk~gm~~g~Ptfv--pV~d~eMgfEkivkIAh~~gv 130 (220)
.|+|+.|+..+. .+-+.-++-||+.++ |...-.-..++|++.|...|+
T Consensus 75 ~V~I~tP~~~H~-----~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 124 (312)
T 3o9z_A 75 YLSIASPNHLHY-----PQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGR 124 (312)
T ss_dssp EEEECSCGGGHH-----HHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCC
T ss_pred EEEECCCchhhH-----HHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 577888876553 344556788999987 555555678899999999886
Done!