BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042204
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/460 (74%), Positives = 391/460 (85%), Gaps = 10/460 (2%)
Query: 66 KKESFLRKRREAPPSQQFLSFAPAPN---LNLQTRLEIFAAMVAGVWSDDNNLQLEATTK 122
++ES L+KRRE +Q AP P + +LE AM+ GV+SDDNNLQLEATT+
Sbjct: 43 REESLLKKRREGLQAQ-----APVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQ 97
Query: 123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
FRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQ+EAAWALTNIAS TSE+TKVVI
Sbjct: 98 FRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 157
Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
DHGAVPIFVKLL S +DD+REQAVWALGNVAGDSP+CRDLVL+ AL+PLLAQLNEH KL
Sbjct: 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL 217
Query: 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
SMLR ATWTLSNFCRG P+P FEQ RPALP LA+L+HSND+EVLTDACWAL +LS+G ND
Sbjct: 218 SMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND 277
Query: 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
KIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCII+ ALP LL LL
Sbjct: 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337
Query: 363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
+ KKSIK ACWTIS ITAGN++QIQAVI+AG+IGPL+NLLQ AE +IK AAWAISN
Sbjct: 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 397
Query: 423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
ATSGGSH+QIKYLV E CIKPLCDLL C + IVTVCL+GLENILKVGE +K + A GD
Sbjct: 398 ATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGD 455
Query: 483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
VN ++Q+++EAEGLEKIENLQSH+NNEI+EK+VKILE YW
Sbjct: 456 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/420 (78%), Positives = 372/420 (88%), Gaps = 2/420 (0%)
Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
AM+ GV+SDDNNLQLEATT+FRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQ+E
Sbjct: 40 AMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFE 99
Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
AAWALTNIAS TSE+TKVVIDHGAVPIFVKLL S +DD+REQAVWALGNVAGDSP+CRDL
Sbjct: 100 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 159
Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND 282
VL+ AL+PLLAQLNEH KLSMLR ATWTLSNFCRG P+P FEQ RPALP LA+L+HSND
Sbjct: 160 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSND 219
Query: 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD 342
+EVLTDACWAL +LS+G NDKIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GD
Sbjct: 220 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 279
Query: 343 DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLI 402
D QTQCII+ ALP LL LL + KKSIK ACWTIS ITAGN++QIQAVI+AG+IGPL+
Sbjct: 280 DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 339
Query: 403 NLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG 462
NLLQ AE +IK AAWAISNATSGGSH+QIKYLV E CIKPLCDLL C + IVTVCL+G
Sbjct: 340 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEG 399
Query: 463 LENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
LENILKVGE +K + A GDVN ++Q+++EAEGLEKIENLQSH+NNEI+EK+VKILE YW
Sbjct: 400 LENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/425 (57%), Positives = 301/425 (70%), Gaps = 5/425 (1%)
Query: 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQ 158
I + M+ ++S QL AT KFRKLLS E +PPI+EVI + GVV RFVEFL R++
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
LQ+E+AW LTNIAS S T++VI GAVPIF++LL+S +D++EQAVWALGN+AGDS
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQL 277
CRD VL L PLL ++ +L+M R A W LSN CRG P P F +V P L VL+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 278 VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337
+ +D +VL DACWAL +LS+G NDKIQAVI+AGVC RLVELL H V+SPAL+ +G+
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL 397
IV GDD QTQ I+NC AL L+ L+ S K+SIK ACWTIS ITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
LI++LQ AE + AAWAI+NATSGGS EQIKYLV CIKPLCDLL + IV
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517
V L GLENIL++GE E + +N Y L+EEA GL+KIE LQSHEN EI++K+ +
Sbjct: 380 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Query: 518 LETYW 522
+E Y+
Sbjct: 438 IEHYF 442
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/425 (57%), Positives = 301/425 (70%), Gaps = 5/425 (1%)
Query: 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQ 158
I + M+ ++S QL AT KFRKLLS E +PPI+EVI + GVV RFVEFL R++
Sbjct: 18 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
LQ+E+AW LTNIAS S T++VI GAVPIF++LL+S +D++EQAVWALGN+AGDS
Sbjct: 78 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQL 277
CRD VL L PLL ++ +L+M R A W LSN CRG P P F +V P L VL+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 278 VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337
+ +D +VL DACWAL +LS+G NDKIQAVI+AGVC RLVELL H V+SPAL+ +G+
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL 397
IV GDD QTQ I+NC AL L+ L+ S K+SIK ACWTIS ITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
LI++LQ AE + AAWAI+NATSGGS EQIKYLV CIKPLCDLL + IV
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517
V L GLENIL++GE E + +N Y L+EEA GL+KIE LQSHEN EI++K+ +
Sbjct: 377 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 434
Query: 518 LETYW 522
+E Y+
Sbjct: 435 IEHYF 439
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/487 (52%), Positives = 326/487 (66%), Gaps = 41/487 (8%)
Query: 61 EQVNLKK----ESFLRKRREAPPS----------------QQFLSFAPAPNLNLQTRLEI 100
+QV L+K E+ ++R PP+ QQF S LQ L
Sbjct: 39 QQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYS-------QLQQEL-- 89
Query: 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 159
M + SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 90 -PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 160 QYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC 219
Q EAAWALTNIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLV 278
RD VL A+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L+
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
+S D E L DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+I
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G+D QTQ +IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIV 456
PL+ LL+ AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 457 TVCLKGLENILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV 515
V L LENILK+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+
Sbjct: 446 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 516 KILETYW 522
KI+ETY+
Sbjct: 503 KIIETYF 509
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 11 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 69
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
NIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS RD VL A
Sbjct: 70 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L++S D E L
Sbjct: 130 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 188
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 189 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 248
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
+IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI PL+ LL+
Sbjct: 249 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 307
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+ V L LEN
Sbjct: 308 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 367
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
ILK+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 368 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
A + +I +G QT+ +++ A+P L + L+++ +K A W + + + +
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
V+ + P++ L + + ++ A W +SN G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 10 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
NIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS RD VL A
Sbjct: 69 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L++S D E L
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
+IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI PL+ LL+
Sbjct: 248 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+ V L LEN
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
ILK+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 367 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
A + +I +G QT+ +++ A+P L + L+++ +K A W + + + +
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
V+ + P++ L + + ++ A W +SN G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 12 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
NIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS RD VL A
Sbjct: 71 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L++S D E L
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
+IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI PL+ LL+
Sbjct: 250 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+ V L LEN
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
ILK+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
A + +I +G QT+ +++ A+P L + L+++ +K A W + + + +
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
V+ + P++ L + + ++ A W +SN G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 305/424 (71%), Gaps = 11/424 (2%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYE 162
M + SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
AAWALTNIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS RD
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSN 281
VL A+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L++S
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
D E L DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+IV G
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401
+D QTQ +IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI PL
Sbjct: 243 NDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 402 INLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVC 459
+ LL+ AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+ V
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 460 LKGLENILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L LENILK+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+ KI+
Sbjct: 362 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 519 ETYW 522
ETY+
Sbjct: 419 ETYF 422
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
A + +I +G QT+ +++ A+P L + L+++ +K A W + + + +
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
V+ + P++ L + + ++ A W +SN G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 12 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
NIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS RD VL A
Sbjct: 71 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L++S D E L
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
+IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI PL+ LL+
Sbjct: 250 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+ V L LEN
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
ILK+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
A + +I +G QT+ +++ A+P L + L+++ +K A W + + + +
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
V+ + P++ L + + ++ A W +SN G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
SDD QL AT KFR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 10 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
NIAS TS TKVV+D AVP+F++LL + + +++EQA+WALGNVAGDS RD VL A
Sbjct: 69 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
+ P+L N + K S++RTATWTLSN CRG P+P + V ALP LA+L++S D E L
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
DACWA+ +LS+G + IQAVI+ + RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
+IN G LP L LL+ S K++IK ACWTIS ITAGN EQIQAVIDA LI PL+ LL+
Sbjct: 248 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
AE K A WAISNA+SGG + I+YLV + CIKPLCDLL A+ I+ V L LEN
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
I+K+GEA+K A G ++N+ A +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 367 IIKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
A + +I +G QT+ +++ A+P L + L+++ +K A W + + + +
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
V+ + P++ L + + ++ A W +SN G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 519 ETYW 522
E Y+
Sbjct: 474 EKYF 477
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 519 ETYW 522
E Y+
Sbjct: 474 EKYF 477
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 519 ETYW 522
E Y+
Sbjct: 460 EKYF 463
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 519 ETYW 522
E Y+
Sbjct: 474 EKYF 477
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 519 ETYW 522
E Y+
Sbjct: 430 EKYF 433
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 519 ETYW 522
E Y+
Sbjct: 458 EKYF 461
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 519 ETYW 522
E Y+
Sbjct: 424 EKYF 427
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 519 ETYW 522
E Y+
Sbjct: 450 EKYF 453
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 519 ETYW 522
E Y+
Sbjct: 423 EKYF 426
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 519 ETYW 522
E Y+
Sbjct: 424 EKYF 427
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 519 ETYW 522
E Y+
Sbjct: 419 EKYF 422
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 519 ETYW 522
E Y+
Sbjct: 423 EKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 519 ETYW 522
E Y+
Sbjct: 424 EKYF 427
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 519 ETYW 522
E Y+
Sbjct: 419 EKYF 422
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 274/425 (64%), Gaps = 13/425 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +Q+E+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AG RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L LR TWTLSN CR P P + V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+ +L A+ + AAWAI+N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ HEN +++ S+ ++
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 519 ETYWC 523
E Y+
Sbjct: 493 EKYFS 497
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
+V G+ S + QL+AT RKLLS E+ PPI+ +I++G++P+FV FL R D +Q+E+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
AWALTNIAS TSE TK V+D GA+P F+ LLASP+ I EQAVWALGN+AGD RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 224 LSEEALIPLLAQLNEHAKLSM----LRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
+ A+ PLLA L S+ LR TWTLSN CR P P + V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
H +D EVL D CWA+ +L++G N++I V++ GV P+LV+LLG +++PAL+ IG+I
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
V G D QTQ +I+ GAL LL + K +I+ A WT+S ITAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
L+++L A+ + A WA++N TSGG+ EQI YLV I+PL +LL + I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
L + NI + E +G+ + + ++EE GL+KIE LQ+HEN +++ S+ ++
Sbjct: 372 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 519 ETYW 522
E Y+
Sbjct: 425 EKYF 428
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 139/250 (55%), Gaps = 17/250 (6%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS+G N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
AL + +I +G + Q Q +I+ GALP LV L+ S + I A W +S I +G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
QAVIDAG + L+ LL + I A WA+SN SGG +EQI+ ++ + L LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE 509
N I+ L L NI G N+ Q V+EA LEK+E LQSHEN +
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 510 IHEKSVKILE 519
I +++ + LE
Sbjct: 238 IQKEAQEALE 247
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 126/219 (57%), Gaps = 4/219 (1%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
SDD QL AT KF ++LS + + I+ VI +G +P V+ L + LQ EA WAL+N
Sbjct: 23 SDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSN 80
Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL 229
IAS +E + VID GA+P V+LL+SPN+ I ++A+WAL N+A V+ AL
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTD 288
P L QL +L+ A W LSN G I + ALP L QL+ S ++++L +
Sbjct: 141 -PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 289 ACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSV 327
A WAL +++G N++ QAV EAG +L +L H + +
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 4/241 (1%)
Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
+P+ + L +D Q Q A + I S +E + VID GA+P V+LL+SPN+ I +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
+A+WAL N+A V+ AL P L QL +L+ A W LSN G I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 264 FEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322
+ ALP L QL+ S ++++L +A WAL +++G N++IQAVI+AG P LV+LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 323 RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382
+ +L AL + +I +G + Q Q + GAL L L H ++K I+ A + K+
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEAQEALEKLQ 250
Query: 383 A 383
+
Sbjct: 251 S 251
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
ALP L QL+ S ++++L +A WAL +++G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
AL + +I +G + Q Q +I+ GALP L V L+ S + I A W +S I +G EQI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
QAVIDAG + L+ LL + I A WA+SN SGG +EQ + + ++ L L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 232
Query: 450 CANPTIVTVCLKGLENI 466
N I + LE +
Sbjct: 233 HENEKIQKEAQEALEKL 249
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 271 LPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP 330
LP + Q ++S D++ L A L +++G N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ 390
AL + +I +G + Q Q +I+ GALP LV L+ S + I A W +S I +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC 450
AVIDAG + L+ LL + I A WA+SN SGG+ + K V+E +P + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 451 A-NPTIVTVCLKGLENI 466
+ N I + LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 245 LRTATWTLSNFCRGMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303
L++A LS G I + ALP L QL+ S ++++L +A WAL +++G N++
Sbjct: 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 304 IQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI 363
IQAVI+AG P LV+LL + +L AL + +I +G + Q Q +I+ GALP LV L+
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA-LVQLL 147
Query: 364 HSHKKSIKNHACWTISKITAGNREQIQAVIDAG 396
S + I A W +S I +G EQ QAV +AG
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 116 QLEATTKFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK 173
Q E + RKL I + I+ VI +G +P V+ L + Q+ EA WAL+NIAS
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG 84
Query: 174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL 233
+E + VID GA+P V+LL+SPN+ I ++A+WAL N+A V+ AL P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL-PAL 143
Query: 234 AQLNEHAKLSMLRTATWTLSNFCRG---MPRPIFEQVRPALPVLAQLVHSNDKEVLTDAC 290
QL +L+ A W LSN G + + E A P L QL S ++++ +A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGAEPALEQLQSSPNEKIQKEAQ 201
Query: 291 WAL 293
AL
Sbjct: 202 EAL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372
P++V+ L L AL+ + I +G + Q Q +I+ GALP L V L+ S + I
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQ 72
Query: 373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
A W +S I +G EQIQAVIDAG + L+ LL + I A WA+SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE 492
+ ++ + L LL N I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 493 AEGLEKIENLQSHENNEIHEKSVKILE 519
A LEK+E LQSHEN +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 2/196 (1%)
Query: 271 LPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP 330
LP + Q ++S D++ L A L +++G N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ 390
AL + +I +G + Q Q +I+ GALP LV L+ S + I A W +S I +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC 450
AVIDAG + L+ LL + I A WA+SN SGG +EQ + + ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 451 ANPTIVTVCLKGLENI 466
N I + LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 245 LRTATWTLSNFCRGMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303
L++A LS G I + ALP L QL+ S ++++L +A WAL +++G N++
Sbjct: 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 304 IQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI 363
IQAVI+AG P LV+LL + +L AL + +I +G + Q Q +I+ GALP LV L+
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA-LVQLL 147
Query: 364 HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL 404
S + I A W +S I +G EQ QAV +AG + L L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 116 QLEATTKFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK 173
Q E + RKL I + I+ VI +G +P V+ L + LQ EA WAL+NIAS
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASG 84
Query: 174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL 233
+E + VID GA+P V+LL+SPN+ I ++A+WAL N+A V+ AL P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL-PAL 143
Query: 234 AQLNEHAKLSMLRTATWTLSNFCRG 258
QL +L+ A W LSN G
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASG 168
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 135 IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL 194
I+ VI +G +P V+ L + LQ EA WAL+NIAS +E + VID GA+P V+LL
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 195 ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254
+SPN+ I ++A+WAL N+A + V E + L QL H + + A L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSHENEKIQKEAQEALEK 206
Query: 255 F 255
Sbjct: 207 L 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
LP + Q ++S+D +E L+ LS+G N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
AL + +I +G + Q Q +I+ GALP L V L+ S + I A W +S I +G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
QAVIDAG + L+ LL + I A WA+SN SGG +EQ + + ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 450 CANPTIVTVCLKGLENI 466
N I + LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 15/207 (7%)
Query: 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372
P++ + L A + I++ + Q Q +I+ GALP L V L+ S + I
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL-VQLLSSPNEQILQ 72
Query: 373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
A W +S I +G EQIQAVIDAG + L+ LL + I A WA+SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE 492
+ ++ + L LL N I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 493 AEGLEKIENLQSHENNEIHEKSVKILE 519
A LEK+E LQSHEN +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 3/185 (1%)
Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
+P+ + L +D Q Q A + I S +E + VID GA+P V+LL+SPN+ I +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
+A+WAL N+A V+ AL P L QL +L+ A W LSN G I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 264 FEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322
+ ALP L QL+ S ++++L +A WAL +++G N++ QAV EAG +L +L H
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 323 RSSSV 327
+ +
Sbjct: 192 ENEKI 196
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
ALP L QL+ S ++++L +A WAL +++G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
AL + +I +G + Q Q +I+ GALP LV L+ S + I A W +S I +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 390 QAVIDAGLIGPLINL 404
QAV +AG + L L
Sbjct: 174 QAVKEAGALEKLEQL 188
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 105/196 (53%), Gaps = 8/196 (4%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
M + SDD QL AT KF ++LS + + I+ VI +G +P V+ L + LQ EA
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EA 74
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
WAL+NIAS +E + VID GA+P V+LL+SPN+ I ++A+WAL N+A V
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG---MPRPIFEQVRPALPVLAQLVHS 280
+ AL P L QL +L+ A W LSN G + + E AL L QL
Sbjct: 135 IDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSH 191
Query: 281 NDKEVLTDACWALYFL 296
++++ +A AL L
Sbjct: 192 ENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 227 EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPA--LPVLAQLVHSNDKE 284
E L+ LL + + + A L+ G P + + A + VL +L+ S D E
Sbjct: 5 EKLVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSE 59
Query: 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344
V +A AL +++G ++ I+A+++AG LV+LL S V A + + +I +G D
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL 404
+ I++ G + +LV L+ S ++ A ++ I +G E I+A++DAG + L+ L
Sbjct: 120 AIKAIVDAGGV-EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178
Query: 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE 464
L + + ++ AA A++N SG + IK +V ++ L LL + + + LE
Sbjct: 179 LTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237
Query: 465 NI 466
NI
Sbjct: 238 NI 239
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWAL 167
S D+ Q EA R L I P I+ ++ +G V V+ L D ++Q EAA AL
Sbjct: 13 STDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARAL 68
Query: 168 TNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE- 226
NIAS E K ++D G V + VKLL S + +++++A AL N+A ++
Sbjct: 69 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG 128
Query: 227 --EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRP-ALPVLAQLVHSNDK 283
E L+ LL + + + A L+N G I V + VL +L+ S D
Sbjct: 129 GVEVLVKLLTSTDSEVQ----KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
EV +A AL +++G I+A+++AG L +LL S V A + + +I +G
Sbjct: 185 EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 15/246 (6%)
Query: 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ 333
L +L+ S D E +A L +++G I+A+++AG LV+LL S V A +
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393
+ +I +G D + I++ G + +LV L+ S ++ A ++ I +G E I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGV-EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP 453
DAG + L+ LL + + ++ AA A++N S G E IK +V ++ L LL +
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 454 TIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK 513
+ + L NI A G + +V +A G+E ++ L + ++E+ ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 514 SVKILE 519
+ + LE
Sbjct: 232 AQRALE 237
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 145 PRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQ 204
P+ VE Q Q A TN+ T+ V+ D +P+ + LL PN D+R
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 205 AVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML-----RTATWTLSNFCRGM 259
A +A+ D+ RD + L NE ++ + R LS C +
Sbjct: 179 AAFAININKYDNSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232
Query: 260 PR-PIFEQV---------RPALPVL-AQLVHSNDKEVLTDA 289
+ +++ + + LPVL L +D E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421
I + D I LINLL++ +++NWAA+AI+
Sbjct: 152 ISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 207 WALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ 266
+AL +A +P ++ + + +L+ N KL+ L NF M F+
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL 319
V P LP + L+H D+ V A AL L+ NDK++ V V RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV----VIKRLEEL 226
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 95/215 (44%), Gaps = 7/215 (3%)
Query: 273 VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPAL 332
++ + ++ND E L+ LS+ + + + A+ ++G P LV +LG SVL A+
Sbjct: 197 IVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255
Query: 333 QTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQ 390
T+ +++ + + G L ++ LL +K ++K A T + + GN+E
Sbjct: 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKL 312
Query: 391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC 450
++ +G L+N+++ W + S S + +V ++ L L
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTD 371
Query: 451 ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
+ +V CL L N+ ++ M+ +G + Q
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPLINLL 405
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L+ LL
Sbjct: 355 AIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTLVQLL 408
Query: 406 QNAEINIKNWAAWAISNAT 424
+ +IN+ AA +SN T
Sbjct: 409 GSDDINVVTCAAGILSNLT 427
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ EA +I ++ +
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 7/215 (3%)
Query: 273 VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPAL 332
++ + ++ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
Query: 333 QTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQ 390
T+ +++ + + G L ++ LL +K ++K A T + + GN+E
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC 450
++ +G L+N+++ W + S S + +V ++ L L
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTD 235
Query: 451 ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
+ +V CL L N+ ++ M+ +G + Q
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 78 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 126
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 127 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 154
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 155 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 214
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 215 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 268
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 269 VQLLGSDDINVVTCAAGILSNLT 291
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 69 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 184
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 185 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 243
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 244 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 271
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 127
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 128 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 155
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 156 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 215
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 216 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 269
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 270 VQLLGSDDINVVTCAAGILSNLT 292
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 74 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 132
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 133 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 189
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 190 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 248
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 249 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 276
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 84 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 132
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 133 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 160
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 161 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 220
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 221 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 274
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 275 VQLLGSDDINVVTCAAGILSNLT 297
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 75 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 133
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 134 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 190
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 191 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 249
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 250 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 277
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 85 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 133
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 134 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 161
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 162 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 221
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 222 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 275
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 276 VQLLGSDDINVVTCAAGILSNLT 298
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 72 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 130
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 131 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 187
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 188 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 246
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 247 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 274
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 82 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 130
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 131 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 158
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 159 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 218
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 219 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 272
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 273 VQLLGSDDINVVTCAAGILSNLT 295
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 69 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 184
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 185 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 243
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 244 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 271
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 127
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 128 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 155
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 156 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 215
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 216 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 269
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 270 VQLLGSDDINVVTCAAGILSNLT 292
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 58 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 116
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 117 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 173
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 174 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 232
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 233 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 260
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 68 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 116
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 117 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 144
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 145 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 204
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 205 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 258
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 259 VQLLGSDDINVVTCAAGILSNLT 281
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 56 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 171
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 172 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 230
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 231 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 258
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 114
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 115 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 142
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 143 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 202
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 203 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 256
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 257 VQLLGSDDINVVTCAAGILSNLT 279
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 73 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 188
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 189 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 247
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 248 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 275
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 131
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 132 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 159
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 160 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 219
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 220 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 273
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 274 VQLLGSDDINVVTCAAGILSNLT 296
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 56 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 171
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 172 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 230
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 231 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 258
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 114
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 115 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 142
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 143 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 202
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 203 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 256
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 257 VQLLGSDDINVVTCAAGILSNLT 279
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 60 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 118
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 119 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 175
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 176 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 234
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 235 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 262
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 70 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 118
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 119 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 146
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 147 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 206
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 207 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 260
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 261 VQLLGSDDINVVTCAAGILSNLT 283
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 73 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 188
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 189 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 247
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 248 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 275
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 131
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 132 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 159
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 160 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 219
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 220 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 273
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 274 VQLLGSDDINVVTCAAGILSNLT 296
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 71 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT--ISKITAGNREQIQAVIDAGL 397
+ + G L ++ LL +K ++K A T + + GN+E ++ +G
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
L+N+++ W + S S + +V ++ L L + +V
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 245
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQ 485
CL L N+ ++ M+ +G + Q
Sbjct: 246 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 273
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 51/263 (19%)
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
A L N+ S E + G +P VK+L SP D + A+ L N L+
Sbjct: 81 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN----------LL 129
Query: 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
L +E AK+++ ++ L + L++ +
Sbjct: 130 LHQEG-----------AKMAV---------------------RLAGGLQKMVALLNKTNV 157
Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
+ L L L+ G + ++ +G LV ++ + L + +++
Sbjct: 158 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 217
Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT--AGNREQIQAVIDAGLIGPL 401
I+ G + L + L ++ ++N WT+ ++ A +E ++ GL+G L
Sbjct: 218 SNKPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGME-----GLLGTL 271
Query: 402 INLLQNAEINIKNWAAWAISNAT 424
+ LL + +IN+ AA +SN T
Sbjct: 272 VQLLGSDDINVVTCAAGILSNLT 294
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA 391
L+ + ++A ++ Q + L LL L SH +I ++AC T+ ++A N + +A
Sbjct: 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 392 VIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
+ D G + L NL+ + I +A A+ N
Sbjct: 301 LWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA 391
L+ + ++A ++ Q + L LL L SH +I ++AC T+ ++A N + +A
Sbjct: 251 LRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEA 309
Query: 392 VIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
+ D G + L NL+ + I +A A+ N
Sbjct: 310 LWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 50/273 (18%)
Query: 159 LQYEAAWALTNIA-SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA---- 213
L+ A ALTN+ + + G + V L S ++D+++ L N++
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPV 273
+S + V S +AL+ ++ + + L + +A W LS C
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC----------------- 318
Query: 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ----AVIEAGVCPRLVELLGHRSSSVLS 329
+ +K + AL FL + Q A+IE+G
Sbjct: 319 ------TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG-----------------G 355
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
L+ + ++A ++ Q + L LL L SH +I ++AC T+ ++A N +
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQ 414
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
+A+ D G + L NL+ + I +A A+ N
Sbjct: 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 50/273 (18%)
Query: 159 LQYEAAWALTNIA-SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA---- 213
L+ A ALTN+ + + G + V L S ++D+++ L N++
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPV 273
+S + V S +AL+ ++ + + L + +A W LS C
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC----------------- 202
Query: 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ----AVIEAGVCPRLVELLGHRSSSVLS 329
+ +K + AL FL + Q A+IE+G
Sbjct: 203 ------TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG-----------------G 239
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
L+ + ++A ++ Q + L LL L SH +I ++AC T+ ++A N +
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQ 298
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
+A+ D G + L NL+ + I +A A+ N
Sbjct: 299 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 50/273 (18%)
Query: 159 LQYEAAWALTNIA-SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA---- 213
L+ A ALTN+ + + G + V L S ++D+++ L N++
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPV 273
+S + V S +AL+ ++ + + L + +A W LS C
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC----------------- 202
Query: 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ----AVIEAGVCPRLVELLGHRSSSVLS 329
+ +K + AL FL + Q A+IE+G
Sbjct: 203 ------TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG-----------------G 239
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
L+ + ++A ++ Q + L LL L SH +I ++AC T+ ++A N +
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQ 298
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
+A+ D G + L NL+ + I +A A+ N
Sbjct: 299 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 44/270 (16%)
Query: 159 LQYEAAWALTNIA-SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA---- 213
L+ A ALTN+ + + G + V L S ++D+++ L N++
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 161
Query: 214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPV 273
+S + V S +AL+ ++ + + L + +A W LS C I V AL
Sbjct: 162 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC-AVDGALAF 220
Query: 274 L-AQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPAL 332
L L + + L A+IE+G L
Sbjct: 221 LVGTLTYRSQTNTL-------------------AIIESG-----------------GGIL 244
Query: 333 QTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV 392
+ + ++A ++ Q + L LL L SH +I ++AC T+ ++A N + +A+
Sbjct: 245 RNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEAL 303
Query: 393 IDAGLIGPLINLLQNAEINIKNWAAWAISN 422
D G + L NL+ + I +A A+ N
Sbjct: 304 WDMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 292 ALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN 351
AL L+N D++ + P L ELL H V + +G I G C+
Sbjct: 382 ALDVLANVYRDELLP----HILPLLKELLFHHEWVVKESGILVLGAIAEG------CMQ- 430
Query: 352 CGALPYLLVLLIH-----SHKKS-IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL 405
G +PYL L+ H S KK+ +++ CWT+S+ Q L+ L+ +
Sbjct: 431 -GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 489
Query: 406 QNAEINIKNWAAWAISNATSGGSHEQIKYL 435
++ ++ A A + E + YL
Sbjct: 490 LDSNKRVQEAACSAFATLEEEACTELVPYL 519
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 14/130 (10%)
Query: 312 VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-----SH 366
+ P L ELL H V + +G I G C+ G +PYL L+ H S
Sbjct: 373 ILPLLKELLFHHEWVVKESGILVLGAIAEG------CMQ--GMIPYLPELIPHLIQCLSD 424
Query: 367 KKS-IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
KK+ +++ CWT+S+ Q L+ L+ + ++ ++ A A +
Sbjct: 425 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 484
Query: 426 GGSHEQIKYL 435
E + YL
Sbjct: 485 EACTELVPYL 494
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 140 QSGVVPRFVEFLMREDY----------PQLQY----------EAAWALTNIASKTSEDTK 179
+ G +PR V+ L+R Q Q+ E +I ++ +
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215
V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 14/130 (10%)
Query: 312 VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-----SH 366
+ P L ELL H V + +G I G C+ G +PYL L+ H S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEG------CMQ--GMIPYLPELIPHLIQCLSD 411
Query: 367 KKS-IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
KK+ +++ CWT+S+ Q L+ L+ + ++ ++ A A +
Sbjct: 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
Query: 426 GGSHEQIKYL 435
E + YL
Sbjct: 472 EACTELVPYL 481
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAV 206
F+E +R + + YEAA A+ N+ ++++ AV + +SP +R AV
Sbjct: 254 FIESCLRNKHEMVVYEAASAIVNLPGCSAKELA-----PAVSVLQLFCSSPKAALRYAAV 308
Query: 207 WALGNVAGDSP 217
L VA P
Sbjct: 309 RTLNKVAMKHP 319
>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
Protein Ton_1937 From Thermococcus Onnurineus Na1
pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
Protein Ton_1937 From Thermococcus Onnurineus Na1
Length = 265
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 154 EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213
ED + A AL I + D ++++ + +F+ L+ N+ + +A+ ALG +
Sbjct: 44 EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLV 103
Query: 214 GDSP 217
D P
Sbjct: 104 KDVP 107
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
A TK + I R + ++GV+PRF + RED ++ + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQA 205
+ +I G P V L +D+++E+A
Sbjct: 135 RKIISRGFTPRAVGRL---HDELQERA 158
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
A TK + I R + ++GV+PRF + RED ++ + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQA 205
+ +I G P V L +D+++E+A
Sbjct: 128 RKIISRGFTPRAVGRL---HDELQERA 151
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 67 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 340 AGDDFQTQCIINCGALPYLLVLL 362
+ + G L ++ LL
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALL 148
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
+ND E L+ LS+ + + + A+ ++G P LV++LG SVL A+ T+ +++
Sbjct: 67 TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 340 AGDDFQTQCIINCGALPYLLVLL 362
+ + G L ++ LL
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALL 148
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGHRS 324
Y L + ND I+ V+ G+ P L E+L HR
Sbjct: 239 YQLQHDSNDIIETVLSMGIYPTLKEILRHRG 269
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGHRS 324
Y L + ND I+ V+ G+ P L E+L HR
Sbjct: 238 YQLQHDSNDIIETVLSMGIYPTLKEILRHRG 268
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
A TK + I R + ++GV+PRF + RED ++ + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQA 205
+ +I G P V L +D+++E+A
Sbjct: 119 RKIISRGFTPRAVGRL---HDELQERA 142
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
A TK + I R + ++GV+PRF + RED ++ + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQA 205
+ +I G P V L +D+++E+A
Sbjct: 118 RKIISRGFTPRAVGRL---HDELQERA 141
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGHRS 324
Y L + ND I+ V+ G+ P L E+L HR
Sbjct: 238 YQLQHDSNDIIETVLSMGIYPTLKEILRHRG 268
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGHRS 324
Y L + ND I+ V+ G+ P L E+L HR
Sbjct: 238 YQLQHDSNDIIETVLSMGIYPTLKEILRHRG 268
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 312 VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-----SH 366
+ P L ELL H V + +G I G G +PYL L+ H S
Sbjct: 398 ILPLLKELLFHHEWVVKESGILVLGAIAEG--------CXQGXIPYLPELIPHLIQCLSD 449
Query: 367 KKS-IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
KK+ +++ CWT+S+ Q L L+ + ++ ++ A A +
Sbjct: 450 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEE 509
Query: 426 GGSHEQIKYL 435
E + YL
Sbjct: 510 EACTELVPYL 519
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
A TK + I R + ++GV+PRF + RED ++ + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQA 205
+ +I G P V L +D+++E+A
Sbjct: 126 RKIISRGFTPRAVGRL---HDELQERA 149
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 190 FVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH 239
V L A +D R +W+LG++ G PR R+ V L P ++ + H
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECVELVRVLAPNISVIGNH 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,670,311
Number of Sequences: 62578
Number of extensions: 600702
Number of successful extensions: 2460
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 179
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)