Query 042204
Match_columns 559
No_of_seqs 483 out of 2777
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 3.8E-86 8.3E-91 603.2 36.6 488 57-557 32-524 (526)
2 KOG0166 Karyopherin (importin) 100.0 3.2E-81 7E-86 617.4 50.4 480 46-535 18-498 (514)
3 KOG0166 Karyopherin (importin) 100.0 7.9E-44 1.7E-48 352.3 32.8 368 99-470 109-488 (514)
4 PLN03200 cellulose synthase-in 100.0 1.9E-41 4E-46 381.8 43.3 407 98-527 188-642 (2102)
5 COG5064 SRP1 Karyopherin (impo 100.0 1.2E-42 2.6E-47 318.1 22.5 366 98-467 113-495 (526)
6 PLN03200 cellulose synthase-in 100.0 9.7E-39 2.1E-43 360.0 44.4 415 99-524 404-861 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.9E-29 4.1E-34 233.6 23.9 402 99-523 85-493 (550)
8 KOG4224 Armadillo repeat prote 100.0 3.4E-28 7.4E-33 225.3 24.4 362 97-469 124-494 (550)
9 PF05804 KAP: Kinesin-associat 100.0 3.2E-24 7E-29 225.2 41.9 388 102-519 253-645 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.4E-23 5.3E-28 218.6 33.9 360 99-474 290-655 (708)
11 KOG0168 Putative ubiquitin fus 99.9 2.3E-19 5E-24 183.0 31.7 393 99-508 167-657 (1051)
12 KOG1048 Neural adherens juncti 99.8 5.6E-18 1.2E-22 174.1 27.2 366 143-526 234-687 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 3.3E-15 7.1E-20 156.1 39.2 397 103-523 42-462 (503)
14 KOG1048 Neural adherens juncti 99.8 1.1E-16 2.4E-21 164.7 25.4 362 99-468 233-684 (717)
15 PF10508 Proteasom_PSMB: Prote 99.8 1.3E-14 2.7E-19 151.7 37.8 402 102-524 6-421 (503)
16 KOG1222 Kinesin associated pro 99.7 5.5E-14 1.2E-18 135.8 30.3 387 101-517 262-657 (791)
17 KOG1222 Kinesin associated pro 99.7 1.2E-13 2.5E-18 133.6 32.3 389 99-509 304-698 (791)
18 KOG2122 Beta-catenin-binding p 99.7 1.8E-14 4E-19 154.3 26.9 365 99-470 197-603 (2195)
19 KOG4500 Rho/Rac GTPase guanine 99.7 3.6E-15 7.7E-20 142.2 19.1 327 138-471 83-434 (604)
20 KOG4199 Uncharacterized conser 99.7 1.8E-13 4E-18 126.8 29.3 317 140-465 102-441 (461)
21 PRK09687 putative lyase; Provi 99.7 8.4E-15 1.8E-19 140.6 21.1 255 143-465 24-279 (280)
22 KOG4199 Uncharacterized conser 99.7 3.8E-14 8.2E-19 131.3 24.0 310 109-425 117-444 (461)
23 KOG2023 Nuclear transport rece 99.7 1.2E-14 2.5E-19 145.5 20.4 358 99-470 128-548 (885)
24 PRK09687 putative lyase; Provi 99.6 1.1E-13 2.3E-18 133.0 24.6 254 100-422 24-279 (280)
25 KOG2171 Karyopherin (importin) 99.6 1.4E-12 3.1E-17 139.3 33.4 396 99-519 118-542 (1075)
26 KOG2122 Beta-catenin-binding p 99.6 1.7E-13 3.8E-18 147.0 22.5 326 98-427 234-603 (2195)
27 KOG4500 Rho/Rac GTPase guanine 99.6 2.7E-12 5.7E-17 122.9 27.1 403 99-517 87-513 (604)
28 PRK13800 putative oxidoreducta 99.6 1.4E-12 3.1E-17 146.0 29.2 276 99-465 621-896 (897)
29 PF04826 Arm_2: Armadillo-like 99.6 5.3E-13 1.2E-17 125.2 21.6 238 268-514 11-253 (254)
30 KOG2171 Karyopherin (importin) 99.6 9.5E-12 2.1E-16 133.1 33.5 394 100-519 37-500 (1075)
31 KOG1293 Proteins containing ar 99.6 4.9E-12 1.1E-16 127.5 29.4 406 103-524 13-534 (678)
32 PF04826 Arm_2: Armadillo-like 99.5 9.3E-13 2E-17 123.6 19.3 196 139-341 9-206 (254)
33 PRK13800 putative oxidoreducta 99.5 3.9E-12 8.4E-17 142.6 27.4 277 140-519 619-895 (897)
34 cd00020 ARM Armadillo/beta-cat 99.5 1.3E-12 2.7E-17 110.0 13.8 119 137-257 2-120 (120)
35 KOG2023 Nuclear transport rece 99.4 6.1E-12 1.3E-16 126.3 19.0 347 103-467 94-504 (885)
36 PTZ00429 beta-adaptin; Provisi 99.4 1.4E-09 3E-14 117.0 38.1 338 99-470 68-435 (746)
37 KOG1293 Proteins containing ar 99.4 5.9E-11 1.3E-15 119.8 25.1 371 97-471 49-536 (678)
38 PF01602 Adaptin_N: Adaptin N 99.4 3.7E-11 7.9E-16 128.5 24.9 326 100-469 43-370 (526)
39 cd00020 ARM Armadillo/beta-cat 99.4 3.7E-12 8E-17 107.1 13.7 119 306-425 2-120 (120)
40 PF01602 Adaptin_N: Adaptin N 99.4 2.7E-10 5.8E-15 121.9 30.7 326 102-469 7-334 (526)
41 cd00256 VATPase_H VATPase_H, r 99.3 4.1E-10 8.9E-15 112.6 25.1 350 142-522 53-424 (429)
42 PTZ00429 beta-adaptin; Provisi 99.3 7E-09 1.5E-13 111.6 35.3 294 100-426 33-327 (746)
43 cd00256 VATPase_H VATPase_H, r 99.3 7.8E-09 1.7E-13 103.5 29.5 344 100-467 54-424 (429)
44 KOG1241 Karyopherin (importin) 99.2 6.3E-09 1.4E-13 106.8 25.6 361 100-469 365-764 (859)
45 KOG0168 Putative ubiquitin fus 99.2 5.7E-09 1.2E-13 108.1 25.4 343 99-449 211-653 (1051)
46 KOG0213 Splicing factor 3b, su 99.1 1.3E-08 2.8E-13 103.9 23.2 386 99-522 716-1141(1172)
47 KOG1241 Karyopherin (importin) 99.1 3.2E-09 6.9E-14 108.9 18.7 367 99-473 129-535 (859)
48 KOG2759 Vacuolar H+-ATPase V1 99.1 1.3E-08 2.8E-13 98.3 20.8 278 102-383 117-438 (442)
49 KOG2160 Armadillo/beta-catenin 99.1 1.1E-08 2.4E-13 97.5 20.2 186 109-297 93-281 (342)
50 KOG2160 Armadillo/beta-catenin 99.1 2.7E-08 5.8E-13 95.0 22.3 188 280-469 94-283 (342)
51 KOG1059 Vesicle coat complex A 99.0 3.6E-07 7.8E-12 93.6 28.1 219 100-341 145-366 (877)
52 KOG0946 ER-Golgi vesicle-tethe 99.0 8.9E-07 1.9E-11 91.6 30.6 323 99-427 22-401 (970)
53 KOG0946 ER-Golgi vesicle-tethe 99.0 7.1E-07 1.5E-11 92.3 29.7 325 143-473 23-404 (970)
54 KOG1061 Vesicle coat complex A 99.0 2.5E-07 5.5E-12 96.0 26.6 341 99-472 49-419 (734)
55 KOG2759 Vacuolar H+-ATPase V1 99.0 1.7E-07 3.7E-12 90.7 23.0 323 99-426 65-439 (442)
56 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.5E-08 9.7E-13 96.6 18.0 227 229-458 57-304 (312)
57 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.5E-08 9.7E-13 96.6 16.0 228 187-417 57-306 (312)
58 COG5215 KAP95 Karyopherin (imp 98.9 1.7E-06 3.7E-11 86.5 26.5 357 99-469 321-712 (858)
59 KOG1242 Protein containing ada 98.9 9.4E-06 2E-10 82.8 30.8 354 102-472 58-448 (569)
60 COG5181 HSH155 U2 snRNP splice 98.8 1.6E-07 3.4E-12 94.4 16.9 308 186-521 605-945 (975)
61 KOG1789 Endocytosis protein RM 98.8 1.1E-05 2.5E-10 85.8 31.0 328 115-450 1741-2141(2235)
62 KOG1062 Vesicle coat complex A 98.8 1.9E-06 4.1E-11 89.7 24.6 257 100-383 108-414 (866)
63 KOG1062 Vesicle coat complex A 98.8 1.1E-05 2.3E-10 84.2 29.1 379 99-522 71-494 (866)
64 KOG1517 Guanine nucleotide bin 98.8 4E-07 8.6E-12 96.7 18.8 271 113-394 450-743 (1387)
65 COG5215 KAP95 Karyopherin (imp 98.7 3E-06 6.6E-11 84.7 22.1 323 103-434 370-720 (858)
66 COG5369 Uncharacterized conser 98.7 1.2E-07 2.6E-12 93.8 12.0 306 204-521 408-739 (743)
67 KOG1061 Vesicle coat complex A 98.7 2.2E-06 4.8E-11 89.2 21.2 340 99-470 86-455 (734)
68 KOG1824 TATA-binding protein-i 98.7 4E-06 8.6E-11 88.5 22.9 354 103-471 9-405 (1233)
69 KOG1242 Protein containing ada 98.7 2.2E-05 4.7E-10 80.2 27.5 338 100-467 135-482 (569)
70 KOG4413 26S proteasome regulat 98.7 4.5E-05 9.9E-10 71.6 26.9 343 100-447 83-460 (524)
71 KOG3678 SARM protein (with ste 98.7 1.3E-06 2.7E-11 85.4 16.6 267 99-382 180-451 (832)
72 KOG0213 Splicing factor 3b, su 98.7 5.1E-06 1.1E-10 85.5 21.7 251 239-521 810-1063(1172)
73 KOG1517 Guanine nucleotide bin 98.6 1.6E-06 3.6E-11 92.2 18.6 254 99-356 472-748 (1387)
74 KOG0212 Uncharacterized conser 98.6 1.4E-06 3.1E-11 87.0 16.8 320 139-471 81-409 (675)
75 KOG3678 SARM protein (with ste 98.6 3.9E-06 8.5E-11 82.0 17.0 273 135-424 173-451 (832)
76 TIGR02270 conserved hypothetic 98.5 2.8E-05 6.1E-10 78.7 23.4 242 100-426 55-297 (410)
77 KOG1060 Vesicle coat complex A 98.5 8.4E-05 1.8E-09 77.5 26.4 280 149-469 150-459 (968)
78 KOG0211 Protein phosphatase 2A 98.5 2.2E-05 4.8E-10 84.3 21.8 384 99-519 276-660 (759)
79 KOG1059 Vesicle coat complex A 98.5 0.00032 7E-09 72.6 28.8 274 143-448 145-422 (877)
80 KOG1824 TATA-binding protein-i 98.5 4.2E-05 9.1E-10 81.1 22.8 378 104-521 573-1034(1233)
81 COG5369 Uncharacterized conser 98.4 1.5E-06 3.3E-11 86.2 11.3 306 114-424 403-740 (743)
82 PF05536 Neurochondrin: Neuroc 98.4 0.00047 1E-08 72.8 29.8 238 99-340 5-261 (543)
83 TIGR02270 conserved hypothetic 98.4 6.2E-05 1.3E-09 76.2 22.1 241 143-467 55-295 (410)
84 COG5181 HSH155 U2 snRNP splice 98.4 2.6E-05 5.6E-10 78.9 18.8 336 99-469 604-947 (975)
85 KOG1060 Vesicle coat complex A 98.4 0.00014 3E-09 75.9 24.3 168 102-298 38-209 (968)
86 KOG2973 Uncharacterized conser 98.4 9.3E-05 2E-09 69.1 20.3 269 144-426 5-315 (353)
87 KOG2259 Uncharacterized conser 98.4 7.1E-06 1.5E-10 83.6 14.1 219 232-469 203-440 (823)
88 COG1413 FOG: HEAT repeat [Ener 98.4 0.00022 4.9E-09 71.4 24.8 251 99-426 43-305 (335)
89 KOG4413 26S proteasome regulat 98.3 0.00017 3.7E-09 67.9 21.3 300 98-403 127-459 (524)
90 KOG1789 Endocytosis protein RM 98.3 0.00058 1.3E-08 73.4 27.0 303 98-408 1770-2142(2235)
91 KOG0212 Uncharacterized conser 98.3 0.00036 7.7E-09 70.4 23.9 293 157-470 181-482 (675)
92 PF00514 Arm: Armadillo/beta-c 98.3 1.3E-06 2.8E-11 57.3 4.9 40 174-213 1-40 (41)
93 KOG2973 Uncharacterized conser 98.3 0.00019 4.2E-09 67.1 20.6 272 100-381 4-313 (353)
94 COG1413 FOG: HEAT repeat [Ener 98.3 0.00029 6.3E-09 70.6 24.2 249 142-467 43-303 (335)
95 KOG2259 Uncharacterized conser 98.3 3.8E-05 8.3E-10 78.5 16.6 252 189-463 202-470 (823)
96 KOG1077 Vesicle coat complex A 98.2 0.0014 3E-08 68.0 27.2 324 103-459 78-424 (938)
97 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00032 6.9E-09 65.8 20.4 230 149-382 156-427 (432)
98 KOG1058 Vesicle coat complex C 98.2 0.0017 3.7E-08 67.8 27.1 328 150-526 107-466 (948)
99 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00052 1.1E-08 68.8 22.2 315 186-522 26-363 (371)
100 KOG0915 Uncharacterized conser 98.1 0.00036 7.9E-09 77.9 21.7 381 100-515 819-1237(1702)
101 PF00514 Arm: Armadillo/beta-c 98.1 6.1E-06 1.3E-10 54.1 5.1 41 385-425 1-41 (41)
102 KOG4646 Uncharacterized conser 98.1 6.5E-05 1.4E-09 61.3 11.9 153 354-522 17-169 (173)
103 KOG4646 Uncharacterized conser 98.1 0.00013 2.9E-09 59.5 13.4 128 96-227 13-141 (173)
104 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00044 9.5E-09 69.3 20.3 324 136-470 19-366 (371)
105 KOG1240 Protein kinase contain 98.1 0.00015 3.3E-09 79.0 16.7 258 113-383 437-725 (1431)
106 PF12348 CLASP_N: CLASP N term 98.0 8E-05 1.7E-09 70.2 12.8 189 108-304 16-212 (228)
107 COG5096 Vesicle coat complex, 98.0 0.0045 9.7E-08 66.4 26.8 142 99-258 55-196 (757)
108 KOG1240 Protein kinase contain 98.0 0.0004 8.7E-09 75.8 18.9 292 187-520 424-722 (1431)
109 PF10165 Ric8: Guanine nucleot 98.0 0.0016 3.4E-08 67.4 22.5 264 121-387 3-341 (446)
110 PF12460 MMS19_C: RNAPII trans 98.0 0.0066 1.4E-07 62.6 26.6 345 102-470 2-396 (415)
111 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00094 2E-08 62.8 17.8 236 274-523 154-428 (432)
112 PF05536 Neurochondrin: Neuroc 97.9 0.00078 1.7E-08 71.2 19.7 237 186-425 6-261 (543)
113 PF12348 CLASP_N: CLASP N term 97.9 5E-05 1.1E-09 71.5 9.4 186 320-523 16-206 (228)
114 KOG0915 Uncharacterized conser 97.9 0.0042 9.2E-08 69.8 24.8 343 113-469 971-1345(1702)
115 PF13646 HEAT_2: HEAT repeats; 97.9 2.8E-05 6E-10 61.0 6.2 87 144-253 1-88 (88)
116 KOG0211 Protein phosphatase 2A 97.9 0.0018 4E-08 69.9 21.7 377 109-523 247-625 (759)
117 PF13513 HEAT_EZ: HEAT-like re 97.9 2.7E-05 5.8E-10 54.9 5.3 55 368-423 1-55 (55)
118 KOG1077 Vesicle coat complex A 97.9 0.0052 1.1E-07 63.9 23.4 297 100-424 112-432 (938)
119 KOG0567 HEAT repeat-containing 97.9 0.0044 9.4E-08 57.1 20.1 245 109-424 15-279 (289)
120 COG5240 SEC21 Vesicle coat com 97.9 0.0021 4.5E-08 65.1 19.5 287 144-466 266-553 (898)
121 KOG1991 Nuclear transport rece 97.9 0.014 3.1E-07 63.1 26.9 284 142-431 410-717 (1010)
122 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00013 2.9E-09 57.7 8.5 95 370-468 2-96 (97)
123 PF13646 HEAT_2: HEAT repeats; 97.8 7.3E-05 1.6E-09 58.5 6.8 86 101-210 1-88 (88)
124 COG5240 SEC21 Vesicle coat com 97.7 0.044 9.5E-07 55.9 26.4 290 187-523 266-555 (898)
125 COG5096 Vesicle coat complex, 97.7 0.03 6.4E-07 60.3 26.5 168 108-299 28-196 (757)
126 PF13513 HEAT_EZ: HEAT-like re 97.7 5.8E-05 1.3E-09 53.1 4.2 55 157-212 1-55 (55)
127 PF01749 IBB: Importin beta bi 97.7 4.4E-05 9.5E-10 60.5 3.9 75 47-121 20-96 (97)
128 KOG1943 Beta-tubulin folding c 97.6 0.0052 1.1E-07 66.9 19.0 150 185-339 341-499 (1133)
129 KOG2734 Uncharacterized conser 97.6 0.012 2.6E-07 58.0 19.6 223 266-502 122-369 (536)
130 KOG2062 26S proteasome regulat 97.6 0.0045 9.8E-08 64.6 17.4 262 143-452 414-678 (929)
131 KOG0567 HEAT repeat-containing 97.5 0.026 5.6E-07 52.2 19.7 224 100-382 37-279 (289)
132 smart00185 ARM Armadillo/beta- 97.5 0.00028 6E-09 46.1 5.3 39 175-213 2-40 (41)
133 KOG2734 Uncharacterized conser 97.5 0.014 3E-07 57.6 18.8 223 97-320 123-370 (536)
134 KOG1078 Vesicle coat complex C 97.5 0.12 2.5E-06 55.0 26.0 71 268-343 244-314 (865)
135 PF12460 MMS19_C: RNAPII trans 97.5 0.086 1.9E-06 54.4 25.6 312 101-427 40-396 (415)
136 KOG2274 Predicted importin 9 [ 97.5 0.23 4.9E-06 53.8 28.4 249 195-451 460-720 (1005)
137 KOG1248 Uncharacterized conser 97.4 0.18 3.9E-06 56.1 28.1 230 232-469 658-899 (1176)
138 KOG1943 Beta-tubulin folding c 97.4 0.16 3.5E-06 55.9 27.3 339 99-469 341-706 (1133)
139 smart00185 ARM Armadillo/beta- 97.3 0.00061 1.3E-08 44.4 5.3 39 133-172 3-41 (41)
140 KOG4535 HEAT and armadillo rep 97.3 0.0018 3.9E-08 64.2 10.1 295 158-463 270-598 (728)
141 KOG2274 Predicted importin 9 [ 97.3 0.12 2.7E-06 55.7 24.1 305 110-427 461-782 (1005)
142 PF10165 Ric8: Guanine nucleot 97.3 0.057 1.2E-06 56.0 21.8 228 109-340 42-337 (446)
143 PF09759 Atx10homo_assoc: Spin 97.2 0.0014 3.1E-08 51.8 7.3 67 159-225 2-70 (102)
144 KOG1078 Vesicle coat complex C 97.2 0.03 6.5E-07 59.2 18.6 284 143-467 246-531 (865)
145 KOG4151 Myosin assembly protei 97.2 0.017 3.8E-07 61.2 16.8 224 218-448 495-721 (748)
146 KOG1991 Nuclear transport rece 97.2 0.29 6.2E-06 53.5 25.9 361 100-470 463-850 (1010)
147 KOG4535 HEAT and armadillo rep 97.2 0.0015 3.2E-08 64.8 8.1 270 107-383 303-603 (728)
148 PRK14707 hypothetical protein; 97.1 0.53 1.1E-05 55.7 28.0 348 152-518 174-524 (2710)
149 KOG1967 DNA repair/transcripti 97.1 0.0037 8E-08 66.9 10.8 190 186-381 816-1022(1030)
150 PF05004 IFRD: Interferon-rela 97.1 0.051 1.1E-06 53.3 18.1 192 100-297 44-256 (309)
151 PRK14707 hypothetical protein; 97.1 0.62 1.3E-05 55.1 28.3 401 102-523 166-571 (2710)
152 PF08569 Mo25: Mo25-like; Int 97.1 0.015 3.2E-07 57.4 14.2 212 180-393 71-295 (335)
153 PF12717 Cnd1: non-SMC mitotic 97.0 0.025 5.4E-07 50.8 14.3 93 324-426 1-93 (178)
154 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0055 1.2E-07 48.5 8.7 93 328-424 3-95 (97)
155 PF08569 Mo25: Mo25-like; Int 97.0 0.17 3.6E-06 50.0 20.5 205 305-522 70-282 (335)
156 PF09759 Atx10homo_assoc: Spin 96.8 0.0081 1.7E-07 47.6 8.2 67 327-393 2-69 (102)
157 PF11841 DUF3361: Domain of un 96.8 0.039 8.4E-07 47.5 12.8 131 304-435 4-141 (160)
158 KOG1248 Uncharacterized conser 96.8 0.15 3.2E-06 56.8 19.9 239 151-394 662-910 (1176)
159 PF12717 Cnd1: non-SMC mitotic 96.8 0.061 1.3E-06 48.2 14.7 92 157-259 2-94 (178)
160 PF05918 API5: Apoptosis inhib 96.8 0.65 1.4E-05 48.7 23.7 291 99-426 23-346 (556)
161 PF05918 API5: Apoptosis inhib 96.8 0.14 3.1E-06 53.5 18.9 293 147-471 28-348 (556)
162 KOG4151 Myosin assembly protei 96.7 0.027 5.8E-07 59.9 13.6 213 101-319 506-720 (748)
163 KOG0414 Chromosome condensatio 96.7 0.16 3.5E-06 56.4 19.6 145 267-427 917-1066(1251)
164 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0048 1E-07 50.2 6.0 70 440-522 44-114 (119)
165 PF06025 DUF913: Domain of Unk 96.7 0.13 2.8E-06 52.0 17.5 216 162-394 3-243 (379)
166 COG5656 SXM1 Importin, protein 96.6 0.68 1.5E-05 49.2 22.1 281 141-428 407-714 (970)
167 KOG0414 Chromosome condensatio 96.6 0.029 6.2E-07 62.0 12.7 161 142-323 919-1083(1251)
168 KOG3036 Protein involved in ce 96.5 0.15 3.2E-06 46.7 15.0 146 112-259 92-249 (293)
169 PF05004 IFRD: Interferon-rela 96.5 0.54 1.2E-05 46.2 20.4 197 271-472 45-261 (309)
170 KOG4653 Uncharacterized conser 96.5 0.18 3.8E-06 54.3 17.5 218 238-466 737-962 (982)
171 KOG2062 26S proteasome regulat 96.4 0.72 1.6E-05 49.0 20.9 131 314-468 522-653 (929)
172 KOG2025 Chromosome condensatio 96.3 0.27 5.8E-06 51.8 17.2 108 265-378 81-188 (892)
173 KOG1967 DNA repair/transcripti 96.3 0.034 7.4E-07 59.9 10.9 155 267-424 865-1023(1030)
174 PF04078 Rcd1: Cell differenti 96.2 0.31 6.7E-06 45.6 15.7 185 282-469 8-219 (262)
175 PF06371 Drf_GBD: Diaphanous G 96.1 0.045 9.8E-07 49.6 10.0 112 99-213 66-186 (187)
176 PF12719 Cnd3: Nuclear condens 96.1 0.19 4E-06 49.3 14.8 111 311-427 26-145 (298)
177 PF13764 E3_UbLigase_R4: E3 ub 96.1 1.4 3E-05 48.7 22.3 210 182-406 114-360 (802)
178 PF11841 DUF3361: Domain of un 96.1 0.14 3.1E-06 44.1 11.9 124 220-344 4-135 (160)
179 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.0087 1.9E-07 48.7 4.3 73 268-340 42-115 (119)
180 KOG4653 Uncharacterized conser 96.0 0.19 4.1E-06 54.0 14.8 224 147-381 732-962 (982)
181 KOG1243 Protein kinase [Genera 96.0 0.29 6.2E-06 51.7 15.8 192 266-472 327-519 (690)
182 COG5116 RPN2 26S proteasome re 95.9 0.27 5.8E-06 50.4 14.5 154 273-451 520-674 (926)
183 PF12719 Cnd3: Nuclear condens 95.8 0.039 8.4E-07 54.1 8.7 113 354-472 27-147 (298)
184 PF06025 DUF913: Domain of Unk 95.8 0.36 7.8E-06 48.8 15.6 145 132-277 95-252 (379)
185 KOG2032 Uncharacterized conser 95.8 0.92 2E-05 46.0 17.8 268 184-467 253-530 (533)
186 KOG2956 CLIP-associating prote 95.8 0.68 1.5E-05 46.6 16.6 146 229-383 331-477 (516)
187 PF08045 CDC14: Cell division 95.8 0.4 8.7E-06 45.1 14.4 104 412-529 107-213 (257)
188 KOG1020 Sister chromatid cohes 95.7 0.26 5.5E-06 56.3 15.1 166 246-425 795-960 (1692)
189 KOG3036 Protein involved in ce 95.7 1.2 2.6E-05 41.0 16.7 138 328-468 96-247 (293)
190 KOG1058 Vesicle coat complex C 95.7 0.56 1.2E-05 49.8 16.6 218 187-426 245-464 (948)
191 PF08045 CDC14: Cell division 95.7 0.42 9.2E-06 44.9 14.2 102 157-258 105-208 (257)
192 KOG2956 CLIP-associating prote 95.7 0.85 1.8E-05 45.9 16.8 184 232-426 291-478 (516)
193 PF02985 HEAT: HEAT repeat; I 95.6 0.018 4E-07 34.7 3.5 29 143-172 1-29 (31)
194 PF02985 HEAT: HEAT repeat; I 95.6 0.015 3.3E-07 35.1 3.1 29 186-214 1-29 (31)
195 KOG3665 ZYG-1-like serine/thre 95.6 1.1 2.3E-05 49.2 19.2 198 292-522 494-696 (699)
196 COG5098 Chromosome condensatio 95.5 0.37 8.1E-06 50.6 14.3 144 142-301 892-1040(1128)
197 PF07814 WAPL: Wings apart-lik 95.4 0.5 1.1E-05 47.6 15.0 274 144-427 23-357 (361)
198 PF13764 E3_UbLigase_R4: E3 ub 95.4 2.6 5.6E-05 46.6 21.0 239 268-523 116-406 (802)
199 PF11701 UNC45-central: Myosin 95.3 0.2 4.4E-06 43.8 10.3 135 322-464 16-155 (157)
200 KOG1020 Sister chromatid cohes 95.2 8.1 0.00018 44.9 32.7 144 100-259 817-962 (1692)
201 PF11707 Npa1: Ribosome 60S bi 95.1 2.5 5.5E-05 42.0 18.9 157 313-469 58-238 (330)
202 PF11865 DUF3385: Domain of un 95.1 0.27 5.9E-06 43.1 10.4 146 143-297 11-156 (160)
203 KOG1243 Protein kinase [Genera 94.9 0.59 1.3E-05 49.4 13.9 226 267-528 291-520 (690)
204 KOG1820 Microtubule-associated 94.9 0.76 1.7E-05 50.7 15.3 197 187-392 255-453 (815)
205 PF04078 Rcd1: Cell differenti 94.9 0.8 1.7E-05 42.9 13.2 134 384-522 79-217 (262)
206 PF14668 RICTOR_V: Rapamycin-i 94.9 0.25 5.4E-06 36.6 8.0 66 371-439 4-70 (73)
207 PF01603 B56: Protein phosphat 94.8 0.77 1.7E-05 47.1 14.4 232 181-426 129-371 (409)
208 KOG1820 Microtubule-associated 94.6 0.95 2.1E-05 50.0 15.1 186 102-298 256-443 (815)
209 KOG1566 Conserved protein Mo25 94.5 4.2 9.2E-05 39.0 17.1 202 179-383 73-286 (342)
210 KOG2032 Uncharacterized conser 94.4 6.7 0.00014 40.1 23.1 268 225-521 252-529 (533)
211 PF14668 RICTOR_V: Rapamycin-i 94.4 0.26 5.7E-06 36.5 7.2 67 328-396 4-70 (73)
212 KOG2025 Chromosome condensatio 94.3 0.57 1.2E-05 49.5 11.9 106 141-253 84-189 (892)
213 COG5656 SXM1 Importin, protein 94.3 9.1 0.0002 41.2 25.0 299 162-473 389-716 (970)
214 COG5116 RPN2 26S proteasome re 94.2 0.45 9.7E-06 48.9 10.6 130 147-299 521-651 (926)
215 PF11864 DUF3384: Domain of un 94.2 8.5 0.00018 40.4 34.3 286 114-425 5-330 (464)
216 PF08506 Cse1: Cse1; InterPro 94.2 1.5 3.2E-05 44.2 14.5 128 282-420 224-370 (370)
217 PF07814 WAPL: Wings apart-lik 94.2 1.7 3.7E-05 43.8 15.0 241 187-437 23-310 (361)
218 KOG2137 Protein kinase [Signal 94.1 5.8 0.00013 42.5 18.9 134 310-452 388-521 (700)
219 KOG2933 Uncharacterized conser 94.1 0.27 5.9E-06 46.7 8.3 144 313-467 90-233 (334)
220 PF11707 Npa1: Ribosome 60S bi 94.1 7 0.00015 38.9 23.8 160 355-524 58-238 (330)
221 COG5218 YCG1 Chromosome conden 93.9 3.1 6.6E-05 43.3 15.9 109 264-378 86-194 (885)
222 PF11701 UNC45-central: Myosin 93.9 0.93 2E-05 39.6 11.1 136 280-422 16-156 (157)
223 PF01347 Vitellogenin_N: Lipop 93.9 5.1 0.00011 43.9 19.5 196 143-373 396-612 (618)
224 PF12530 DUF3730: Protein of u 93.7 4.9 0.00011 37.7 16.3 203 187-411 2-218 (234)
225 KOG2611 Neurochondrin/leucine- 93.6 7.6 0.00017 39.5 17.6 234 102-340 14-274 (698)
226 KOG2999 Regulator of Rac1, req 93.5 7 0.00015 40.5 17.5 166 270-437 84-254 (713)
227 COG5098 Chromosome condensatio 93.5 2.2 4.9E-05 45.1 14.3 178 272-472 895-1080(1128)
228 KOG1525 Sister chromatid cohes 93.4 20 0.00043 42.0 23.1 72 353-426 259-330 (1266)
229 PF12231 Rif1_N: Rap1-interact 93.3 10 0.00022 38.4 20.8 305 109-424 3-351 (372)
230 PF01603 B56: Protein phosphat 93.2 2.8 6.1E-05 43.0 14.8 233 99-345 133-375 (409)
231 KOG2933 Uncharacterized conser 92.8 1.2 2.5E-05 42.6 10.2 145 268-426 87-235 (334)
232 KOG1566 Conserved protein Mo25 92.7 9.1 0.0002 36.8 15.9 201 222-427 74-288 (342)
233 PF14500 MMS19_N: Dos2-interac 92.6 10 0.00022 36.3 18.1 214 147-383 4-237 (262)
234 KOG1949 Uncharacterized conser 92.5 3.6 7.8E-05 43.7 14.1 195 135-339 167-369 (1005)
235 PF12830 Nipped-B_C: Sister ch 92.4 3.8 8.1E-05 37.0 13.0 146 100-258 9-168 (187)
236 KOG1993 Nuclear transport rece 92.1 21 0.00046 38.9 20.2 219 244-469 631-865 (978)
237 KOG2999 Regulator of Rac1, req 92.0 9.4 0.0002 39.6 16.0 158 100-261 84-246 (713)
238 PF10363 DUF2435: Protein of u 91.9 0.77 1.7E-05 35.9 6.8 85 99-195 3-87 (92)
239 PLN03076 ARF guanine nucleotid 91.8 18 0.0004 44.0 20.8 268 196-470 1148-1491(1780)
240 PF13251 DUF4042: Domain of un 91.7 3 6.4E-05 37.3 11.1 144 326-470 1-176 (182)
241 smart00638 LPD_N Lipoprotein N 91.6 11 0.00023 41.0 17.7 136 269-423 393-543 (574)
242 PF10363 DUF2435: Protein of u 91.6 1.6 3.4E-05 34.2 8.2 83 229-321 5-87 (92)
243 KOG2137 Protein kinase [Signal 91.5 5.2 0.00011 42.9 14.2 204 245-469 290-497 (700)
244 smart00638 LPD_N Lipoprotein N 91.2 14 0.00031 40.0 18.3 158 186-372 394-567 (574)
245 PF08167 RIX1: rRNA processing 91.0 2.3 5E-05 37.5 9.8 112 311-426 25-144 (165)
246 PF13251 DUF4042: Domain of un 91.0 5.7 0.00012 35.5 12.2 141 159-299 2-175 (182)
247 KOG1525 Sister chromatid cohes 90.8 17 0.00037 42.5 18.6 148 311-469 259-406 (1266)
248 PF04063 DUF383: Domain of unk 90.7 1.1 2.5E-05 40.4 7.7 126 195-321 5-157 (192)
249 PF12530 DUF3730: Protein of u 90.5 15 0.00033 34.4 19.3 140 144-298 2-151 (234)
250 KOG2611 Neurochondrin/leucine- 90.2 22 0.00047 36.4 16.3 188 147-340 16-225 (698)
251 PF04063 DUF383: Domain of unk 90.1 4.2 9.1E-05 36.8 10.7 112 322-437 6-142 (192)
252 PF10274 ParcG: Parkin co-regu 90.1 8 0.00017 34.4 12.1 71 353-425 38-109 (183)
253 PF11864 DUF3384: Domain of un 89.9 28 0.00061 36.5 28.6 249 112-382 42-329 (464)
254 PF14500 MMS19_N: Dos2-interac 89.9 19 0.00041 34.4 19.4 224 189-429 3-241 (262)
255 KOG1832 HIV-1 Vpr-binding prot 89.8 4.6 0.0001 44.1 12.1 312 111-429 365-777 (1516)
256 KOG1822 Uncharacterized conser 89.8 54 0.0012 39.6 22.8 272 186-467 877-1188(2067)
257 KOG3665 ZYG-1-like serine/thre 89.8 6.6 0.00014 43.2 14.0 195 208-421 494-693 (699)
258 PF14225 MOR2-PAG1_C: Cell mor 89.5 20 0.00043 34.2 16.8 214 105-340 13-254 (262)
259 PLN03076 ARF guanine nucleotid 89.2 64 0.0014 39.6 23.7 274 110-394 1148-1505(1780)
260 PF06371 Drf_GBD: Diaphanous G 88.9 2.2 4.9E-05 38.3 8.3 110 143-256 67-186 (187)
261 PF11865 DUF3385: Domain of un 88.7 4.2 9E-05 35.6 9.5 147 267-424 8-156 (160)
262 PF08506 Cse1: Cse1; InterPro 88.6 16 0.00034 36.9 14.7 148 306-463 205-370 (370)
263 PF08324 PUL: PUL domain; Int 88.4 6.8 0.00015 37.6 11.8 145 158-304 78-237 (268)
264 PF01347 Vitellogenin_N: Lipop 88.3 26 0.00056 38.3 17.6 197 186-418 396-615 (618)
265 COG5218 YCG1 Chromosome conden 88.1 11 0.00023 39.5 12.9 103 141-250 90-192 (885)
266 cd03569 VHS_Hrs_Vps27p VHS dom 87.9 2.6 5.6E-05 36.1 7.5 74 99-172 41-114 (142)
267 cd03568 VHS_STAM VHS domain fa 87.6 4.3 9.3E-05 34.8 8.6 71 397-467 38-109 (144)
268 KOG0413 Uncharacterized conser 87.5 54 0.0012 36.8 21.3 92 368-470 945-1037(1529)
269 PF12231 Rif1_N: Rap1-interact 87.3 36 0.00078 34.5 20.6 266 198-469 59-353 (372)
270 cd03568 VHS_STAM VHS domain fa 87.0 3.2 6.9E-05 35.6 7.5 75 99-173 37-111 (144)
271 COG5209 RCD1 Uncharacterized p 87.0 6.9 0.00015 35.7 9.6 104 113-218 114-222 (315)
272 cd03567 VHS_GGA VHS domain fam 86.5 5.2 0.00011 34.0 8.4 71 397-467 39-115 (139)
273 PF03378 CAS_CSE1: CAS/CSE pro 86.3 23 0.0005 36.6 14.6 261 157-426 44-325 (435)
274 cd03569 VHS_Hrs_Vps27p VHS dom 86.2 5.7 0.00012 34.0 8.6 72 397-468 42-114 (142)
275 KOG1992 Nuclear export recepto 85.5 63 0.0014 35.6 19.3 303 143-449 362-705 (960)
276 PF04388 Hamartin: Hamartin pr 85.4 20 0.00044 39.4 14.4 157 100-278 5-161 (668)
277 KOG1848 Uncharacterized conser 85.3 34 0.00074 39.8 15.9 136 158-298 811-958 (1610)
278 KOG1949 Uncharacterized conser 85.1 61 0.0013 35.0 19.2 236 267-527 127-375 (1005)
279 PF12031 DUF3518: Domain of un 84.8 3.4 7.3E-05 38.2 6.8 79 158-237 139-226 (257)
280 KOG2005 26S proteasome regulat 84.8 45 0.00098 35.7 15.5 288 100-432 416-711 (878)
281 cd03561 VHS VHS domain family; 84.5 8.9 0.00019 32.4 9.0 72 397-468 38-112 (133)
282 smart00288 VHS Domain present 84.5 4.9 0.00011 33.9 7.4 74 99-172 37-111 (133)
283 cd03561 VHS VHS domain family; 83.9 7.6 0.00017 32.8 8.4 75 99-173 37-113 (133)
284 PF06685 DUF1186: Protein of u 83.7 40 0.00087 31.8 14.1 131 309-445 71-203 (249)
285 PF12031 DUF3518: Domain of un 83.4 3 6.5E-05 38.5 5.9 83 114-198 139-229 (257)
286 PF10521 DUF2454: Protein of u 83.4 16 0.00036 35.3 11.5 121 397-522 120-252 (282)
287 KOG1848 Uncharacterized conser 83.1 53 0.0012 38.3 16.2 61 453-521 1070-1130(1610)
288 cd03572 ENTH_epsin_related ENT 83.0 19 0.00041 29.8 9.9 74 440-525 39-121 (122)
289 KOG1988 Uncharacterized conser 82.8 70 0.0015 35.4 16.3 253 100-383 25-281 (970)
290 cd03567 VHS_GGA VHS domain fam 82.8 6.8 0.00015 33.3 7.5 74 99-172 38-116 (139)
291 cd03572 ENTH_epsin_related ENT 82.8 13 0.00027 30.8 8.8 72 397-468 39-119 (122)
292 KOG1788 Uncharacterized conser 82.7 56 0.0012 37.0 15.6 76 389-465 901-979 (2799)
293 PF08167 RIX1: rRNA processing 82.5 32 0.00069 30.2 12.1 114 143-260 26-146 (165)
294 PF14726 RTTN_N: Rotatin, an a 82.4 12 0.00025 29.7 8.1 70 437-520 28-97 (98)
295 KOG0413 Uncharacterized conser 82.4 6.3 0.00014 43.5 8.6 127 327-470 947-1075(1529)
296 PF10521 DUF2454: Protein of u 82.2 20 0.00043 34.8 11.6 138 143-281 120-277 (282)
297 KOG0891 DNA-dependent protein 81.9 14 0.0003 46.0 12.2 264 109-384 491-764 (2341)
298 PF12830 Nipped-B_C: Sister ch 81.8 39 0.00085 30.4 14.2 144 229-383 10-167 (187)
299 PF14225 MOR2-PAG1_C: Cell mor 81.6 50 0.0011 31.5 15.7 179 187-383 66-254 (262)
300 KOG1788 Uncharacterized conser 81.1 1.1E+02 0.0023 35.0 18.7 294 97-406 464-784 (2799)
301 smart00288 VHS Domain present 79.6 27 0.00058 29.4 10.1 72 397-468 38-111 (133)
302 PF03378 CAS_CSE1: CAS/CSE pro 79.4 82 0.0018 32.7 16.3 261 197-470 42-326 (435)
303 KOG1410 Nuclear transport rece 79.0 99 0.0022 33.4 16.7 282 110-406 50-355 (1082)
304 PF10274 ParcG: Parkin co-regu 79.0 24 0.00052 31.5 9.8 79 100-180 39-117 (183)
305 PF12726 SEN1_N: SEN1 N termin 78.1 1.2E+02 0.0027 33.9 24.8 115 397-526 442-556 (727)
306 PF08324 PUL: PUL domain; Int 77.9 8.4 0.00018 37.0 7.5 117 111-229 122-246 (268)
307 KOG0891 DNA-dependent protein 77.7 56 0.0012 41.1 15.3 252 202-469 461-720 (2341)
308 PF12074 DUF3554: Domain of un 76.9 27 0.00058 34.9 11.1 216 141-364 21-255 (339)
309 cd08050 TAF6 TATA Binding Prot 76.5 18 0.00039 36.2 9.5 103 100-214 179-297 (343)
310 PF14726 RTTN_N: Rotatin, an a 76.4 25 0.00054 27.8 8.3 67 140-208 28-94 (98)
311 KOG1822 Uncharacterized conser 75.5 2.1E+02 0.0044 35.1 21.8 216 143-365 877-1110(2067)
312 PF12054 DUF3535: Domain of un 74.9 71 0.0015 33.2 13.6 120 397-518 313-438 (441)
313 PF06685 DUF1186: Protein of u 74.9 77 0.0017 30.0 16.5 89 184-284 72-169 (249)
314 KOG2549 Transcription initiati 74.6 44 0.00095 34.9 11.5 104 100-215 208-328 (576)
315 smart00367 LRR_CC Leucine-rich 74.5 1.3 2.8E-05 25.3 0.5 17 10-26 1-17 (26)
316 KOG0301 Phospholipase A2-activ 74.0 1.3E+02 0.0029 32.3 15.8 161 279-448 554-725 (745)
317 PF12463 DUF3689: Protein of u 73.7 41 0.00089 32.8 10.7 125 348-472 4-177 (303)
318 KOG4524 Uncharacterized conser 73.7 38 0.00083 37.8 11.4 94 99-195 803-899 (1014)
319 PF00790 VHS: VHS domain; Int 73.3 22 0.00048 30.2 8.1 72 397-468 43-118 (140)
320 cd00197 VHS_ENTH_ANTH VHS, ENT 73.1 19 0.00041 29.3 7.4 71 440-522 38-114 (115)
321 COG5209 RCD1 Uncharacterized p 73.1 15 0.00032 33.6 6.9 132 374-516 120-261 (315)
322 KOG4464 Signaling protein RIC- 73.1 63 0.0014 32.5 11.7 152 232-383 50-231 (532)
323 PF00790 VHS: VHS domain; Int 72.7 7.5 0.00016 33.1 5.0 74 99-172 42-118 (140)
324 cd03565 VHS_Tom1 VHS domain fa 71.6 27 0.00058 29.8 8.1 95 407-523 16-115 (141)
325 PF12726 SEN1_N: SEN1 N termin 70.5 1.2E+02 0.0025 34.1 15.0 143 102-259 444-587 (727)
326 PF13001 Ecm29: Proteasome sta 69.3 92 0.002 33.0 13.3 223 280-528 248-493 (501)
327 PF04821 TIMELESS: Timeless pr 67.2 36 0.00078 32.7 8.9 76 451-526 132-211 (266)
328 PF04869 Uso1_p115_head: Uso1 67.2 1.3E+02 0.0029 29.5 13.6 154 157-340 52-231 (312)
329 KOG4464 Signaling protein RIC- 66.7 1.5E+02 0.0033 30.0 18.9 155 102-259 48-233 (532)
330 PF03130 HEAT_PBS: PBS lyase H 66.0 6.4 0.00014 22.6 2.2 16 370-387 1-16 (27)
331 KOG2005 26S proteasome regulat 65.0 1.1E+02 0.0025 32.9 12.2 78 99-178 48-131 (878)
332 PF08216 CTNNBL: Catenin-beta- 63.9 8.2 0.00018 30.9 3.1 43 160-203 63-105 (108)
333 PF04499 SAPS: SIT4 phosphatas 63.8 56 0.0012 34.3 10.1 84 387-470 53-150 (475)
334 KOG2085 Serine/threonine prote 63.7 1.7E+02 0.0037 29.6 13.5 235 219-470 169-416 (457)
335 PF11791 Aconitase_B_N: Aconit 63.0 39 0.00085 28.9 7.1 98 272-383 25-123 (154)
336 KOG1832 HIV-1 Vpr-binding prot 62.9 49 0.0011 36.7 9.4 156 133-301 592-776 (1516)
337 PF08711 Med26: TFIIS helical 62.2 21 0.00045 24.4 4.6 35 487-521 13-48 (53)
338 KOG0889 Histone acetyltransfer 62.0 2.4E+02 0.0052 36.9 15.9 35 266-300 1123-1157(3550)
339 smart00509 TFS2N Domain in the 61.2 37 0.00081 25.3 6.1 35 487-521 35-69 (75)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 61.0 49 0.0011 26.9 7.5 73 99-171 37-114 (115)
341 PF09324 DUF1981: Domain of un 59.5 19 0.00041 27.7 4.4 69 225-293 15-83 (86)
342 smart00567 EZ_HEAT E-Z type HE 59.0 16 0.00035 21.3 3.2 18 369-388 2-19 (30)
343 PF08389 Xpo1: Exportin 1-like 58.7 1.1E+02 0.0024 25.7 11.5 49 283-335 100-148 (148)
344 KOG2073 SAP family cell cycle 58.4 3.2E+02 0.0069 30.9 15.3 175 268-450 189-376 (838)
345 PF04388 Hamartin: Hamartin pr 58.1 1.6E+02 0.0035 32.5 12.8 91 312-405 71-161 (668)
346 KOG0392 SNF2 family DNA-depend 57.6 1.4E+02 0.003 34.9 12.0 176 243-427 144-327 (1549)
347 PLN03205 ATR interacting prote 57.5 2.2E+02 0.0047 28.7 13.5 160 268-428 322-519 (652)
348 KOG2213 Apoptosis inhibitor 5/ 55.6 2.3E+02 0.0051 28.5 18.1 130 199-340 38-180 (460)
349 KOG0301 Phospholipase A2-activ 55.5 3E+02 0.0066 29.8 18.6 161 157-322 558-727 (745)
350 KOG2149 Uncharacterized conser 54.8 1E+02 0.0022 31.0 9.5 113 355-470 60-172 (393)
351 PF12783 Sec7_N: Guanine nucle 54.7 1.5E+02 0.0032 26.0 11.0 106 114-223 37-155 (168)
352 KOG2038 CAATT-binding transcri 54.3 3.4E+02 0.0074 30.0 15.8 73 268-345 303-375 (988)
353 smart00802 UME Domain in UVSB 54.0 84 0.0018 25.3 7.4 80 353-437 11-95 (107)
354 cd03565 VHS_Tom1 VHS domain fa 53.9 1.4E+02 0.003 25.4 10.6 72 397-468 39-115 (141)
355 KOG2149 Uncharacterized conser 53.6 1E+02 0.0022 31.1 9.3 131 313-448 60-191 (393)
356 KOG2199 Signal transducing ada 53.4 34 0.00074 34.1 5.9 84 439-534 45-129 (462)
357 cd00183 TFIIS_I N-terminal dom 52.1 66 0.0014 24.0 6.2 35 487-521 37-71 (76)
358 PF04821 TIMELESS: Timeless pr 51.8 2.3E+02 0.0049 27.2 16.1 63 96-172 10-72 (266)
359 KOG2038 CAATT-binding transcri 51.2 3.8E+02 0.0083 29.7 21.6 151 97-258 228-410 (988)
360 KOG0392 SNF2 family DNA-depend 51.1 3.6E+02 0.0079 31.7 13.9 179 283-472 143-329 (1549)
361 PF04499 SAPS: SIT4 phosphatas 51.0 95 0.0021 32.6 9.3 68 141-214 20-92 (475)
362 PF13001 Ecm29: Proteasome sta 50.7 1.5E+02 0.0032 31.5 10.9 174 110-298 248-443 (501)
363 KOG2199 Signal transducing ada 50.3 72 0.0016 31.9 7.5 72 397-468 46-118 (462)
364 PF08216 CTNNBL: Catenin-beta- 50.1 20 0.00043 28.8 3.1 41 415-457 65-105 (108)
365 PF08767 CRM1_C: CRM1 C termin 49.3 2.7E+02 0.0059 27.5 12.7 180 327-524 43-245 (319)
366 PF06743 FAST_1: FAST kinase-l 48.8 81 0.0018 23.1 6.2 67 247-314 3-69 (71)
367 KOG1410 Nuclear transport rece 48.3 4E+02 0.0087 29.1 23.0 295 99-424 5-333 (1082)
368 PF12463 DUF3689: Protein of u 47.3 2.8E+02 0.0062 27.1 12.3 126 178-303 2-178 (303)
369 PF06012 DUF908: Domain of Unk 45.9 98 0.0021 30.8 8.2 61 132-192 253-323 (329)
370 PF11791 Aconitase_B_N: Aconit 44.8 45 0.00097 28.6 4.6 102 99-214 22-123 (154)
371 KOG1087 Cytosolic sorting prot 44.4 1.3E+02 0.0027 31.5 8.7 71 397-467 39-111 (470)
372 PF06012 DUF908: Domain of Unk 43.5 1.3E+02 0.0029 29.8 8.7 78 158-236 237-325 (329)
373 KOG1087 Cytosolic sorting prot 42.8 82 0.0018 32.8 7.1 95 405-521 14-110 (470)
374 KOG4524 Uncharacterized conser 42.2 67 0.0014 36.1 6.6 97 266-364 800-900 (1014)
375 PF01417 ENTH: ENTH domain; I 41.9 49 0.0011 27.4 4.6 98 407-523 14-121 (125)
376 PF09758 FPL: Uncharacterised 41.7 1.9E+02 0.0041 24.9 8.0 123 174-296 15-147 (149)
377 cd08050 TAF6 TATA Binding Prot 41.2 3.8E+02 0.0082 26.8 11.6 109 229-338 212-338 (343)
378 KOG2676 Uncharacterized conser 40.6 37 0.0008 33.4 4.0 63 163-225 376-440 (478)
379 PF08713 DNA_alkylation: DNA a 39.8 2.9E+02 0.0063 25.0 12.4 141 145-310 54-196 (213)
380 PF12397 U3snoRNP10: U3 small 39.7 2.1E+02 0.0045 23.4 9.4 67 143-215 7-75 (121)
381 PF08064 UME: UME (NUC010) dom 39.2 2E+02 0.0044 23.0 7.7 80 353-437 11-95 (107)
382 KOG0803 Predicted E3 ubiquitin 38.8 6.7E+02 0.014 30.2 14.2 196 313-521 43-261 (1312)
383 PF12054 DUF3535: Domain of un 38.8 3.5E+02 0.0075 28.2 11.1 79 113-196 101-179 (441)
384 PF07539 DRIM: Down-regulated 38.8 2.5E+02 0.0054 23.9 10.9 82 185-279 17-98 (141)
385 PF13925 Katanin_con80: con80 36.1 2.1E+02 0.0045 25.1 7.8 73 226-299 27-99 (164)
386 PF09324 DUF1981: Domain of un 36.0 1.2E+02 0.0027 23.1 5.7 65 351-420 15-83 (86)
387 KOG2229 Protein required for a 35.7 2.1E+02 0.0045 29.9 8.5 114 353-471 16-132 (616)
388 PF07923 N1221: N1221-like pro 35.4 57 0.0012 31.8 4.6 59 137-196 55-127 (293)
389 PF09758 FPL: Uncharacterised 35.3 42 0.00091 28.8 3.1 125 343-467 16-148 (149)
390 KOG1993 Nuclear transport rece 34.8 7E+02 0.015 28.0 28.1 300 154-467 498-811 (978)
391 PF01365 RYDR_ITPR: RIH domain 34.2 1.6E+02 0.0034 26.9 7.2 118 347-470 37-171 (207)
392 PF10257 RAI16-like: Retinoic 33.8 5E+02 0.011 26.0 11.5 130 305-437 3-169 (353)
393 PF08713 DNA_alkylation: DNA a 32.6 1E+02 0.0023 28.0 5.7 77 311-395 120-196 (213)
394 KOG2073 SAP family cell cycle 32.2 8E+02 0.017 27.9 15.2 37 222-258 185-221 (838)
395 PF07923 N1221: N1221-like pro 31.7 59 0.0013 31.7 4.0 79 395-473 59-170 (293)
396 PF12765 Cohesin_HEAT: HEAT re 31.1 24 0.00052 22.9 0.8 25 311-335 18-42 (42)
397 smart00802 UME Domain in UVSB 30.9 2.8E+02 0.0062 22.3 7.2 80 311-395 11-96 (107)
398 KOG2011 Sister chromatid cohes 30.6 9.2E+02 0.02 28.1 13.9 135 321-467 297-434 (1048)
399 KOG2085 Serine/threonine prote 30.4 6.1E+02 0.013 25.9 14.1 103 156-259 146-250 (457)
400 PF08389 Xpo1: Exportin 1-like 30.2 1.5E+02 0.0032 24.9 6.0 49 113-167 100-148 (148)
401 PF12074 DUF3554: Domain of un 29.4 5.7E+02 0.012 25.3 17.4 89 228-321 23-113 (339)
402 COG5110 RPN1 26S proteasome re 29.4 7.2E+02 0.016 26.5 16.7 249 145-431 453-711 (881)
403 PF14663 RasGEF_N_2: Rapamycin 27.9 1.6E+02 0.0036 24.0 5.4 39 143-183 9-47 (115)
404 PF14663 RasGEF_N_2: Rapamycin 27.8 1.2E+02 0.0026 24.7 4.6 31 186-216 9-39 (115)
405 PF08064 UME: UME (NUC010) dom 27.7 2.3E+02 0.005 22.7 6.2 80 311-395 11-96 (107)
406 PF04510 DUF577: Family of unk 27.7 4.3E+02 0.0094 23.4 10.8 121 394-524 40-165 (174)
407 PF14631 FancD2: Fanconi anaem 27.6 3.6E+02 0.0077 32.9 10.0 140 276-423 442-581 (1426)
408 PRK09169 hypothetical protein; 26.9 1.4E+03 0.031 29.2 28.0 16 282-297 329-344 (2316)
409 PF13504 LRR_7: Leucine rich r 26.7 19 0.00042 18.1 -0.2 12 11-22 1-12 (17)
410 PF08767 CRM1_C: CRM1 C termin 26.5 6.3E+02 0.014 24.9 17.8 173 244-424 43-243 (319)
411 KOG1791 Uncharacterized conser 26.3 8.3E+02 0.018 29.7 12.0 181 268-451 1438-1640(1758)
412 KOG0803 Predicted E3 ubiquitin 25.5 1.3E+03 0.027 28.0 19.6 254 100-363 42-330 (1312)
413 PF01365 RYDR_ITPR: RIH domain 25.3 1.2E+02 0.0026 27.7 4.7 117 220-340 36-169 (207)
414 PF04869 Uso1_p115_head: Uso1 25.0 6.7E+02 0.015 24.7 15.9 188 312-506 35-265 (312)
415 KOG4337 Microsomal triglycerid 24.7 7.8E+02 0.017 26.8 10.6 161 351-522 357-522 (896)
416 PF12397 U3snoRNP10: U3 small 24.4 3.9E+02 0.0084 21.7 10.6 70 267-342 4-76 (121)
417 KOG2549 Transcription initiati 24.3 8.8E+02 0.019 25.8 12.6 98 240-338 259-368 (576)
418 KOG2152 Sister chromatid cohes 23.6 6.3E+02 0.014 27.9 9.8 43 215-257 363-405 (865)
419 KOG0368 Acetyl-CoA carboxylase 23.4 1.4E+03 0.031 28.0 13.6 26 496-521 987-1012(2196)
420 PF12783 Sec7_N: Guanine nucle 22.6 5.1E+02 0.011 22.5 10.5 79 305-384 67-147 (168)
421 KOG1924 RhoA GTPase effector D 21.6 1.2E+03 0.025 26.2 13.4 142 369-519 207-360 (1102)
422 PF14666 RICTOR_M: Rapamycin-i 21.6 6.6E+02 0.014 23.4 12.9 129 283-424 78-224 (226)
423 KOG4231 Intracellular membrane 20.6 1.4E+02 0.0031 31.0 4.3 71 311-382 328-398 (763)
424 COG5537 IRR1 Cohesin [Cell div 20.2 1.1E+03 0.024 25.6 10.5 97 197-297 287-385 (740)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.8e-86 Score=603.16 Aligned_cols=488 Identities=51% Similarity=0.786 Sum_probs=446.8
Q ss_pred hhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhh-hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchH
Q 042204 57 NTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQ-TRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPI 135 (559)
Q Consensus 57 ~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~ 135 (559)
-....||+||||.|+||||....++... .+.-+.+ +....+|.+.+.|.|+|.+.|+.|+..+|+++|.+..||+
T Consensus 32 QQvElRkqKreE~LnKrRNl~dv~e~a~----ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPI 107 (526)
T COG5064 32 QQVELRKQKREELLNKRRNLADVSEEAE----SSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPI 107 (526)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhh----hccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCc
Confidence 3455899999999999999833222111 1111122 2234689999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC
Q 042204 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD 215 (559)
Q Consensus 136 ~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 215 (559)
+.++++|++|.|+++++......++++|+|+|+||++|+..++..++++|++|.++++|.+++.+++++++|+|+|+++|
T Consensus 108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 99999999999999996555468999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHH
Q 042204 216 SPRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWAL 293 (559)
Q Consensus 216 ~~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 293 (559)
++.+|+.++..|++.+++.++..+ .+..+.++++|+|+|||+++ |.+....+...+|.|.+++.+.|+++..+|||++
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 999999999999999999999544 35789999999999999999 8888899999999999999999999999999999
Q ss_pred HHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 042204 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNH 373 (559)
Q Consensus 294 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~ 373 (559)
+||++++.+.++.+++.|+.++|+++|.+++..++.+|++.+|||+++++.+++.++++|+++.+..+|.++ ...+|++
T Consensus 268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKE 346 (526)
T COG5064 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKE 346 (526)
T ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhcCCCC
Q 042204 374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG--SHEQIKYLVREKCIKPLCDLLPCA 451 (559)
Q Consensus 374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~ 451 (559)
|||+++||++|+.++++.+++.+++|.|+++|...+..++++||||++|.+.++ .|+.+++|+++|+|++||++|...
T Consensus 347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~ 426 (526)
T COG5064 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV 426 (526)
T ss_pred hheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999876 578999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCC
Q 042204 452 NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQP 531 (559)
Q Consensus 452 d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~~~~ 531 (559)
|.++.+++++++.++++.++.+..... ...|.|..++++.||+++|..||++.|.+||.+|+.||++||++|+.-+++
T Consensus 427 dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~l 504 (526)
T COG5064 427 DNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDEL 504 (526)
T ss_pred CccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhc
Confidence 999999999999999999998765432 356889999999999999999999999999999999999999998877789
Q ss_pred CCCCCCCCCCCCCCCcCCCccccCCc
Q 042204 532 GPQPGLPHAGNEGEDALGSNVITNGK 557 (559)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (559)
+|++ .||. |.||++.-.-|.
T Consensus 505 apet----~g~t--ftfg~~~~~qg~ 524 (526)
T COG5064 505 APET----AGNT--FTFGSNVNQQGN 524 (526)
T ss_pred Cccc----cCCe--eecCCCccccCC
Confidence 9988 5666 889998766553
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-81 Score=617.39 Aligned_cols=480 Identities=60% Similarity=0.898 Sum_probs=438.0
Q ss_pred chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042204 46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125 (559)
Q Consensus 46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~ 125 (559)
+.++++-+..=+..-.||+||+|.++|||+..+..... ......+......+.+++.+.|+++..++.++..+|+
T Consensus 18 ~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~q~~a~~~~rk 92 (514)
T KOG0166|consen 18 DAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD-----ELLSDSQSQASNLELMLAALYSDDPQQQLTATQAFRK 92 (514)
T ss_pred cHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc-----cccchhHHHhhhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44555655555677799999999999999922111110 0011112222347889999999999999999999999
Q ss_pred hccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHH
Q 042204 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA 205 (559)
Q Consensus 126 lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a 205 (559)
++|.+.+|+++.++..|+||.||++|...+++.+|++|+|+|+|||+++.+++..++++|++|.|+.++.+++..++++|
T Consensus 93 llS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQa 172 (514)
T KOG0166|consen 93 LLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQA 172 (514)
T ss_pred HHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHH
Confidence 99999899999999999999999999877779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHh
Q 042204 206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKE 284 (559)
Q Consensus 206 ~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~ 284 (559)
+|+|+||+++++.+|+.+++.|++.+|+.++..+....++++++|+|+|||+++ |.+.+..+..++|.|..++++.|++
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEE 252 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999999999999976666789999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 042204 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364 (559)
Q Consensus 285 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~ 364 (559)
|+.+|||+++||+++.++.++.+++.|++++|+.+|.+.+..++.+|++++|||+++++.+++.++++|+++.|..++..
T Consensus 253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q 042204 365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPL 444 (559)
Q Consensus 365 ~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 444 (559)
.+...+|++|||+++||++|++++++.+++.|++|.|+++|+.+++++|++|+|||+|++.+++++++.+|++.|+|++|
T Consensus 333 s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl 412 (514)
T KOG0166|consen 333 SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL 412 (514)
T ss_pred CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh
Confidence 43777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 445 CDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 445 ~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
|++|.-.|.+++.+++++|.+|++.++..... ++ +++..+|+++||+++||.||.|+|.+||++|+.||++||+.
T Consensus 413 cdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 413 CDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred hhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999987643 12 88999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC
Q 042204 525 RVVGPQPGPQP 535 (559)
Q Consensus 525 ~~~~~~~~~~~ 535 (559)
|++++.-.+.+
T Consensus 488 e~~~~~~~~~~ 498 (514)
T KOG0166|consen 488 EDDEDDQQPTT 498 (514)
T ss_pred Ccccccccccc
Confidence 86665433444
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-44 Score=352.28 Aligned_cols=368 Identities=26% Similarity=0.388 Sum_probs=329.7
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.+|.+|+.|.. .++.+|++|+|+|.++.++. .+....++++|.+|.|+.++.+++ .+++++|+|+|+||+.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999974 55899999999999999876 778888999999999999999999 899999999999999999999
Q ss_pred HHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204 178 TKVVIDHGAVPIFVKLLASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~ 256 (559)
|+.+++.|++++|+.++...+. .+.+++.|+|.|+|.........-.-..+++.|..++ .+.|.+++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988665 7788999999999976522122222234678888888 8889999999999999999
Q ss_pred cCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHH
Q 042204 257 RGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQT 334 (559)
Q Consensus 257 ~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~ 334 (559)
.+.+... .....|++|.|+++|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..+|. ++...++..|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 8874444 3445899999999999999999999999999999999999999999999999999999 5667799999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
|+||+.|+.++++.++++|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.|+++|.-.|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 89999999999999998 789999999999999999999998999999
Q ss_pred HHHHHHHHHHhcCCCH-------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 414 NWAAWAISNATSGGSH-------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~-------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
..++.++.|+...+.. .....+-+.|+++.+..|-.+++.++...|...+.+++..+
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 9999999999875432 23455667899999999999999999999999999988554
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=381.82 Aligned_cols=407 Identities=22% Similarity=0.248 Sum_probs=346.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 98 LEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 98 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
.+.+|.+++.|.++++..|..|++.+.++++.. .+++..+++.|+||.|+++|++++++.+|++|+|+|+||+++++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 478999999999999999999999988776553 5689999999999999999987654799999999999999999999
Q ss_pred HHHHHhCCCHHHHHHhhCCCC---------HHHHHHHHHHHHHHhCCCch-----------hhhhh---hccCCHHHHHH
Q 042204 178 TKVVIDHGAVPIFVKLLASPN---------DDIREQAVWALGNVAGDSPR-----------CRDLV---LSEEALIPLLA 234 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~r~~i---~~~g~l~~Ll~ 234 (559)
+..+++.|++|.|++++.+++ ..++++|+|+|+|||++.+. .|+.. ...|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998655 34699999999999987543 22222 34577888888
Q ss_pred HhchhhhHhHH----HHHHHHHHHhhcCC-CCCcHhh-------------------HhchHHHHHHhhccCCHhHHHHHH
Q 042204 235 QLNEHAKLSML----RTATWTLSNFCRGM-PRPIFEQ-------------------VRPALPVLAQLVHSNDKEVLTDAC 290 (559)
Q Consensus 235 ll~~~~~~~~~----~~a~~~L~nL~~~~-~~~~~~~-------------------~~~~l~~L~~lL~~~d~~v~~~a~ 290 (559)
.+. ..+...+ ..++|+|.+|++++ |...+.. ..++++.|+.++...+.+++.+++
T Consensus 347 l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 774 3333222 35789999999987 3332211 135667888999989999999999
Q ss_pred HHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 042204 291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSI 370 (559)
Q Consensus 291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v 370 (559)
|+|++++.++++..+.+.+.|+++.|+++|.+++..++..|+++|+|++.+++++++.++++|++|.|+.+|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999998899999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204 371 KNHACWTISKITAGNREQIQAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449 (559)
Q Consensus 371 ~~~a~~~L~nl~~~~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 449 (559)
+++|+|+|+|++.+ +++++.++ +.|+++.|+++|.++++++++.|+|+|.|++..++.+. ++.|+.+|.
T Consensus 505 qeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLl 574 (2102)
T PLN03200 505 KEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLL 574 (2102)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhc
Confidence 99999999999885 45556655 78999999999999999999999999999998876554 377888999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCC
Q 042204 450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVV 527 (559)
Q Consensus 450 ~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~ 527 (559)
++++.+...+++++.+++...+..+ ...+.....||++.|.+|+.|+++++|+.|.++|.+||....+
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d----------~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLED----------LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhH----------HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 9999999999999999987655421 1233345679999999999999999999999999999986543
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-42 Score=318.14 Aligned_cols=366 Identities=25% Similarity=0.337 Sum_probs=321.2
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 98 LEIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 98 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.+.+|++++.+. ....-.+++|+|+|.++.|+. ......++++|.+|.|+++|.+++ .+++++|.|+|+||+.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 378999999995 455678999999999999886 666777889999999999999998 89999999999999999999
Q ss_pred hHHHHHhCCCHHHHHHhhCCCC--HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLASPN--DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
+|+.+.+.|++.+++.++.+.. ..+.+.+.|.|+|+|.......+.-.-..+++.|.+++ ...|+++...|||+++.
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence 9999999999999999988744 47788999999999954322122211123577777777 78899999999999999
Q ss_pred hhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204 255 FCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ 333 (559)
Q Consensus 255 L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 333 (559)
|+.+...... ....++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+-.+|+++...++..|||
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 9998733333 334778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC---CHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204 334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG---NREQIQAVIDAGLIGPLINLLQNAEI 410 (559)
Q Consensus 334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~ 410 (559)
+|+||..++.++++.+++++++|.|+.+|.+. +..+|++|||+++|.+.| .|+.++++++.|++.+|+++|.-.+.
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 99999999999999999999999999999998 999999999999999974 68999999999999999999999888
Q ss_pred hHHHHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 411 NIKNWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 411 ~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
++.+.++.++.|+...|.. ....++-+.|+++.+..+.++.+..+...+...+..++
T Consensus 429 kiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 429 KIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred cchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 8999999999999987632 23345455899999999999999999999999998877
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.7e-39 Score=360.00 Aligned_cols=415 Identities=18% Similarity=0.169 Sum_probs=368.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.++.|+..|.+.+.+.|.++++.|+.+..++ .+.++.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 45678899999999999999999999976553 778999999999999999999988 8999999999999999899999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.++.|..+.+.|++++|+.+| .+.+...++.++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888999999999999 556789999999999999753
Q ss_pred CCCCc-----------------------------------H---hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 259 MPRPI-----------------------------------F---EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 259 ~~~~~-----------------------------------~---~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
..... . ....++++.|+.++.++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31100 0 002468999999999999999999999999999999
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD-FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
.+..+.++..|+++.++.+|.+.+..++..++|+|+|++.+.. .+...+++.|++++|+++|.+. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999997544 4556778999999999999998 9999999999999
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH--HHHHHHcCChHHHHhcCCCCChHHHH
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ--IKYLVREKCIKPLCDLLPCANPTIVT 457 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~~~~l~~L~~lL~~~d~~v~~ 457 (559)
|++.. ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++...+.++ ..++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99865 4566778888999999999999999999999999999999876555 36677899999999999999988777
Q ss_pred H--HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 458 V--CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 458 ~--~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
. ++++|..+.+..+... ...+++..++|..++++.|.....|.+|.++++|..||+++..+
T Consensus 799 ~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 799 TSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 6 9999999998654432 24578999999999999997777999999999999999999864
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-29 Score=233.60 Aligned_cols=402 Identities=19% Similarity=0.197 Sum_probs=335.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.+..+...+++.++.+|..|...+.++.-. ....-.++..+++..|+.-+..+. ..+|..+..|++|++. .++++
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccch
Confidence 3556777889999999999999999997654 455566677778888777666666 5999999999999999 48899
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..+...|++.++..+-++++..++..+..+|.|+.. +.+.|..+...|+++.|+.++ +..+..++..++.+++|+.-.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 999999999999998889999999999999999964 456688889999999999999 788999999999999999877
Q ss_pred CCCCcHhhH--hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204 259 MPRPIFEQV--RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336 (559)
Q Consensus 259 ~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 336 (559)
......... ..++|.|+.++.++++.++-.|..+|++++. +.+.+..++++|.+|.++++|+++..........||.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 644444333 4499999999999999999999999999995 4456678999999999999999988888888999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204 337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWA 416 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a 416 (559)
||+-..-.. ..+.++|++.+|+.+|...++.+++..|..+|.|+++.+......+.+.|.+|.++.++.++...+|.+.
T Consensus 318 nisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 998755432 3577899999999999988677799999999999998778888899999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh---
Q 042204 417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA--- 493 (559)
Q Consensus 417 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~--- 493 (559)
..++..++.. .....++.+.|+++.|+.++.+.+.+++-++..+|.|+...-+ .|...++.-
T Consensus 397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-------------~YarviEawd~P 461 (550)
T KOG4224|consen 397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-------------HYARVIEAWDHP 461 (550)
T ss_pred HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-------------HHHHHHHHhcCc
Confidence 9999999885 3567788999999999999999999999999999999875433 345544432
Q ss_pred --ccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 494 --EGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 494 --g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
|.-..|.....+....++..|.|-|.+...
T Consensus 462 ~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 462 VQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222344555555556666666666665543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-28 Score=225.32 Aligned_cols=362 Identities=20% Similarity=0.273 Sum_probs=315.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 97 RLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 97 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.+..+..++....++..+.|..++.++.+++.. +.....+...|++..+.++-++.+ ..+|..+..+|.|+.. ..+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence 356777888888888889999999999998776 677778889999999999888887 8999999999999998 899
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC--CHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE--ALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
+|+.++.+|++|.|+.++++.+.+++..|..+++||+.+.. .|..+.+.+ .++.|+.++ .+.+..++..|..+|.|
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987754 477777777 899999999 77888999999999999
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhHHH
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS-SSVLSPALQ 333 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~al~ 333 (559)
++............+.+|.++++++++..........|+.|++-++-.. ..+++.|++..|+.+|...+ ++++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 9998766666667899999999999988888888888999999655433 46889999999999999865 459999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
+|.|++.........+.++|.++.+..++... ...+|.+...+++.++. +......+.+.|++|.|+.++.+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888888899999999999999988 88999999888888865 45567889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH------cCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVR------EKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
..|+.||.|++.. .++...+++ .|+-..|..++.+.+..++..+.|.+..++..
T Consensus 435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999984 455555554 35556788888888888899999999888743
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=3.2e-24 Score=225.15 Aligned_cols=388 Identities=20% Similarity=0.171 Sum_probs=317.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
.++-..++..+ .....+...|.+++.. ......+.+.|+|+.|+++|++++ .++...++.+|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 44444444443 4445677788887654 677888899999999999999988 8999999999999999 78899999
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
.+.|+++.|.+++.+++.+++..++++|.|++.+ +..|..+.+.|.++.|+.+|.+ +..+..++.+|++++.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 9999999999999999999999999999999877 4569999999999999999943 34556789999999998765
Q ss_pred CcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 262 PIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 262 ~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
.......+++|.+++++. .+++.+...+++.+.|++... ...+.+.+.+.++.|+........ ...+..+.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 656666789999998764 456777888899999999554 466888888899999988655433 235578999998
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHHHHHHH
Q 042204 341 GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIKNWAAW 418 (559)
Q Consensus 341 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~~a~~ 418 (559)
++......+. +.+..|+.++..+++++...++..+|+|++..+.+..+.+.+.+++|.|.++|..+ ++++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 8754333333 47788888888776889999999999999876555555555789999999999765 5689999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204 419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL 496 (559)
Q Consensus 419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l 496 (559)
.++.++. +++....+.+.|+++.|+++|.. +|.+++.+++.++.+++...+. ...++.+.++.
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~ 622 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIP 622 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchH
Confidence 9999987 67888888999999999999954 5789999999999999976543 45667889999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 042204 497 EKIENLQSHENNEIHEKSVKILE 519 (559)
Q Consensus 497 ~~l~~L~~~~~~~v~~~a~~il~ 519 (559)
..+..|.++.|++|++.|..+++
T Consensus 623 ~ylidL~~d~N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 623 AYLIDLMHDKNAEIRKVCDNALD 645 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999987765554
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=2.4e-23 Score=218.61 Aligned_cols=360 Identities=20% Similarity=0.213 Sum_probs=299.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.++.|++.|.+++.+....++..|.++.-. .++...|.+.|+++.|++++.+++ .+++..|+++|.|++. +++.|
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6789999999999999999999999997443 678999999999999999999988 8999999999999999 89999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+. ..|..+...+.++.++.++...++..+...+++.+.|++..
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999865 46677999999998765 56889999999999999987777777777889999999998
Q ss_pred CCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 042204 259 MPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIG 336 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~ 336 (559)
..........++++.|+.... ..|+- .+..++|++.+++.....+. +.+..|+.++... ++.....++.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 755554455678888887654 44433 33589999988754434443 4678888887764 5678899999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHH
Q 042204 337 HIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIK 413 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~ 413 (559)
|+...+....+.+.+.+++|.|..+|..+ ..+++.-+++..++.++. ++.....+.+.|+++.|+.+|.. +|.++.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 99987666666666789999999999654 245799999999998874 56777777899999999999975 478999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHH-HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhc
Q 042204 414 NWAAWAISNATSGGSHEQIKYLV-REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEK 474 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~ 474 (559)
.+.++++.++..+. +.+..++ +.+++..|+++++++++.++..|-.+|.-+....+.+.
T Consensus 596 lQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 596 LQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999973 4555555 47899999999999999999999999999998877653
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.3e-19 Score=182.96 Aligned_cols=393 Identities=19% Similarity=0.271 Sum_probs=315.5
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
..+..|++.|+.. |+..|++|+..+..+++..+.+...-+--.-++|.|+.+|++..+++++..|+++|++++..-|..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4677889999876 999999999999999987755555555455689999999999988999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204 178 TKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~ 256 (559)
...+|+.++||.|+.-|. -...++.++++.+|-.|+...+. .++..|++...+..| +-....+++.|+.+.+|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999998554 48899999999999999977654 577899999999888 6667889999999999999
Q ss_pred cCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhCCCC----Ccchh
Q 042204 257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLGHRS----SSVLS 329 (559)
Q Consensus 257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~~----~~v~~ 329 (559)
..-+...+..+...+|.|..+|++.|...++.+|-++.+++++ .++..+.+...|++....++|.-.. ..+..
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 9988888888999999999999999999999999999999854 5567788999999999999987653 33556
Q ss_pred hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-------------chhHHHH-----------------------
Q 042204 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-------------KKSIKNH----------------------- 373 (559)
Q Consensus 330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-------------~~~v~~~----------------------- 373 (559)
..++.+..++++.+-....++..++...|..+|.... .|.-..+
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 6788899999987777677777777777777774320 0000000
Q ss_pred -----------HH------------------HHHH-------------Hhh---------cCCHHHHHHHHHcCCHHHHH
Q 042204 374 -----------AC------------------WTIS-------------KIT---------AGNREQIQAVIDAGLIGPLI 402 (559)
Q Consensus 374 -----------a~------------------~~L~-------------nl~---------~~~~~~~~~li~~~~i~~Li 402 (559)
+. ..+. +.- ...++..+.++.. ++|.|+
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~-llpVLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD-LLPVLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH-HHHHHH
Confidence 00 1111 000 0123444444443 899999
Q ss_pred HHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccccc
Q 042204 403 NLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVRE-KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAI 480 (559)
Q Consensus 403 ~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~ 480 (559)
+++.+. ++.|+..++.||..+....+.+.+..++.. .+-..+-.+|.++|..++.-+|....-+++.-
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl---------- 631 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL---------- 631 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh----------
Confidence 999765 899999999999999999899998887765 55567888999999999999999888888542
Q ss_pred CcchHHHHHHHHhccHHHHHHHhcCCCH
Q 042204 481 GDVNQYAQLVEEAEGLEKIENLQSHENN 508 (559)
Q Consensus 481 ~~~~~~~~~i~~~g~l~~l~~L~~~~~~ 508 (559)
.+.|...|.+.|++..++.|....|+
T Consensus 632 --pd~F~~~F~REGV~~~v~~L~~~~~~ 657 (1051)
T KOG0168|consen 632 --PDTFSPSFRREGVFHAVKQLSVDSNP 657 (1051)
T ss_pred --HHHhhhhHhhhhHHHHHHHHhccCCc
Confidence 34477889999999999999874433
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=5.6e-18 Score=174.05 Aligned_cols=366 Identities=20% Similarity=0.225 Sum_probs=285.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch--hh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR--CR 220 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~r 220 (559)
-+|..+.+|.+.+ +.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+.+.+|+.+|+|+|-|+...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4688899999998 89999999999999999999999999999999999999999999999999999999966554 66
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc----------C----CHhHH
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS----------N----DKEVL 286 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~----------~----d~~v~ 286 (559)
-.+.+.++++.++.++....|.++++.++.+|+||+..+ .....++...++.|..-+-. + +.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 678899999999999988889999999999999999984 45556667777777665421 1 36788
Q ss_pred HHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChH-----HH--------
Q 042204 287 TDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAGDDF-----QT-------- 346 (559)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~-----~~-------- 346 (559)
.++..+|+|++....+..+.+-+. |++..|+..+.+ .+..-.+.++.++.|++..-.. ..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998777666777664 889988888763 4556677888888888643220 00
Q ss_pred ------------------HH----------------------HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC-
Q 042204 347 ------------------QC----------------------IINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN- 385 (559)
Q Consensus 347 ------------------~~----------------------~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~- 385 (559)
.. +....++..-+.+|....++.+.+.++.+|-|++++.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00 0011123333444433336778899999999999853
Q ss_pred --HHHH-HHH-HHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC------ChHH
Q 042204 386 --REQI-QAV-IDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA------NPTI 455 (559)
Q Consensus 386 --~~~~-~~l-i~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~------d~~v 455 (559)
...+ ..+ .+..+++.|+++|..++..+.+.++.+|.|++.+. . .+.++..++++.|++.|... +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--h-hhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2333 333 36789999999999999999999999999999953 3 34456688999999999542 3588
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhcCCCC
Q 042204 456 VTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYWCGRV 526 (559)
Q Consensus 456 ~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f~~~~ 526 (559)
+..++..|.+++..... .+..+.+.+|+++|..+..+ .++.+.+.|..++...|...|
T Consensus 629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999855433 35667789999999999654 556888999999988877554
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=3.3e-15 Score=156.08 Aligned_cols=397 Identities=16% Similarity=0.165 Sum_probs=299.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182 (559)
Q Consensus 103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 182 (559)
.+...|++.+.+....++..|.+++... .+... ..+..+.|...|.+++ +.+|..+++.|.+++.++......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3778888888888888889999988753 33222 4568899999999999 99999999999999998777788889
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC
Q 042204 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP 262 (559)
Q Consensus 183 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~ 262 (559)
+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999876654 4566777788888888 4445567788999999998876433
Q ss_pred cH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcc-----hh-hHHHHH
Q 042204 263 IF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSV-----LS-PALQTI 335 (559)
Q Consensus 263 ~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v-----~~-~al~~L 335 (559)
.. ....|+++.++..+.++|.-++.+++.+|..++. .+...+.+.+.|+++.|..++.+.+..- .. ..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 32 2336899999999999999999999999999998 5556688999999999999998743222 22 244677
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH-HHcC-----CHHHHHHHhhcCC
Q 042204 336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV-IDAG-----LIGPLINLLQNAE 409 (559)
Q Consensus 336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-i~~~-----~i~~Li~lL~~~~ 409 (559)
++++...+....... ..++..+..++.+. ++..+..|..+++.|+. +.+..+.+ ...+ ++........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 888875433222111 13555666777787 99999999999999974 45666666 3322 3444444555677
Q ss_pred hhHHHHHHHHHHHHhcCCCH---HHH----HHH---HHcCChH-HHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204 410 INIKNWAAWAISNATSGGSH---EQI----KYL---VREKCIK-PLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDT 478 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~~~~---~~~----~~l---~~~~~l~-~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~ 478 (559)
.++|..++.++.++...++. +.+ ... ...+-.. .+.++++.+=++++..++..|..++.....
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------ 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------ 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence 89999999999999655432 111 111 1234445 788888888899999999999999976543
Q ss_pred ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
...++...|.++-+.+=....+.+..+.=+.++...-.
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 34556667777777666667788888887888887763
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=1.1e-16 Score=164.65 Aligned_cols=362 Identities=18% Similarity=0.207 Sum_probs=277.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch--
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE-- 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~-- 176 (559)
..+|+.+.+|.+.++..|-.|+..+..+ +..++.....+.+.|.|+.||.+|.+.. .+++..|+++|.|+..++..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHl-cfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHL-CFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHH-HhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence 3689999999999999999999888875 6655777888889999999999999999 89999999999999998766
Q ss_pred hHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch-------------hhhH
Q 042204 177 DTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE-------------HAKL 242 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~-------------~~~~ 242 (559)
++-.+.+.++|+.++.+|.. .+.++++.+..+|+|++..+ .++..++ ...+..|...+.. ..+.
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccc
Confidence 89999999999999999986 89999999999999998763 3333333 3345555554421 1136
Q ss_pred hHHHHHHHHHHHhhcCCC--CCcHhhHhchHHHHHHhhc------cCCHhHHHHHHHHHHHhccCChh-----H------
Q 042204 243 SMLRTATWTLSNFCRGMP--RPIFEQVRPALPVLAQLVH------SNDKEVLTDACWALYFLSNGKND-----K------ 303 (559)
Q Consensus 243 ~~~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~~-----~------ 303 (559)
++..+++.+|.|++.... ...+....|++..|+..++ ..|...++++...+.|++..-.. .
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 789999999999998552 2233344788888888775 34677889999999999853220 0
Q ss_pred --------------------HHH----------------------HHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhc
Q 042204 304 --------------------IQA----------------------VIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 304 --------------------~~~----------------------~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~ 340 (559)
.+. +....++..-..+|. +.++.+.+.++.+|-|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 000 011112333222332 3456678889999999998
Q ss_pred CChH----HHHHH-HhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC------C
Q 042204 341 GDDF----QTQCI-INCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA------E 409 (559)
Q Consensus 341 ~~~~----~~~~~-~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~------~ 409 (559)
+... ....+ ....+++.|+++|+.+ +..+.+.++.+|.|++.+ ...+.++-...++.|++.|... +
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d--~rnk~ligk~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD--IRNKELIGKYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC--chhhhhhhcchHHHHHHhCcCCCCCcCch
Confidence 7642 33334 5779999999999999 999999999999999864 2345666678999999999654 3
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHH
Q 042204 410 INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILK 468 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~ 468 (559)
.++...++..|.|++.. +.+..+.+.+.+.++.|+.+..+. +++..+.+...+..+=.
T Consensus 626 edtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999976 788899999999999999998765 45777777766666443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.75 E-value=1.3e-14 Score=151.68 Aligned_cols=402 Identities=17% Similarity=0.176 Sum_probs=294.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
..+++.|... ...+.++..+..-+.. .+..+ ....+.+..+|+..+ .+....++.+|..+... ......
T Consensus 6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~----~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l- 74 (503)
T PF10508_consen 6 NELLEELSSK--AERLEALPELKTELSS--SPFLE----RLPEPVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL- 74 (503)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHH----hchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH-
Confidence 4455555544 3345555555554433 12112 222344888888777 67778888999998873 222222
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
..+..+.|...|.++++.+|..+++.+++++.++......+.+.+.++.++..+ .+++..+...|+.+|.+++...+.
T Consensus 75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence 457889999999999999999999999999988877777888899999999999 788999999999999999987644
Q ss_pred CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204 262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 262 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 341 (559)
.......+.++.|..++...++.++..++.++.+++..+++..+.+.+.|+++.++..|.+++.-++..|+.+|..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 3333345668889999988888999999999999999999999999999999999999999888899999999999999
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCC-ch---h-HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204 342 DDFQTQCIINCGALPYLLVLLIHSH-KK---S-IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWA 416 (559)
Q Consensus 342 ~~~~~~~~~~~g~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a 416 (559)
.+...+.+.+.|+++.|..++.+.. ++ . .--......++++...+..+..... .++..|.+++.+.|...+..|
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p-~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP-AFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHhCCCChhHHHHH
Confidence 6667788999999999999997652 22 1 1122335667776644544433332 266777788888999999999
Q ss_pred HHHHHHHhcCCCHHHHHHH-HHc-----CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHH
Q 042204 417 AWAISNATSGGSHEQIKYL-VRE-----KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLV 490 (559)
Q Consensus 417 ~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i 490 (559)
..+++.++. +.+....| ... .++..+.....+...+++..++.++.+++...+..... .-.+-....+
T Consensus 311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~ 384 (503)
T PF10508_consen 311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN----DILSITESWY 384 (503)
T ss_pred HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHH
Confidence 999999986 55665555 332 24556666667788899999999999999765431110 0001122223
Q ss_pred HHhc--cHH-HHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 491 EEAE--GLE-KIENLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 491 ~~~g--~l~-~l~~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
+..+ -.. .+..+.+.+=+|++-.++.++...+..
T Consensus 385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 3323 233 666777778899999999999876553
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.5e-14 Score=135.83 Aligned_cols=387 Identities=17% Similarity=0.104 Sum_probs=284.7
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 101 FAAMVAGVW---SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 101 l~~lv~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.++.+.++ .....+...|+..|.+++.. ...-..+...++|..||+.|+.++ .++-......|..++- ..++
T Consensus 262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eN 337 (791)
T KOG1222|consen 262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDEN 337 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccc
Confidence 344444443 23344555677777787543 455566788899999999999998 7999999999999998 6789
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+..+.+.|++..|++++...+++++...+..+.|++.++. .|...+..|.+|.+..++..++. ...|+..++.++.
T Consensus 338 K~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~ 413 (791)
T KOG1222|consen 338 KIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSC 413 (791)
T ss_pred hHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhcc
Confidence 9999999999999999999999999999999999988865 57777789999999999954432 3446677888887
Q ss_pred CCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTI 335 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L 335 (559)
+.....+.....+++.+.+.+- ..+.+|-...+..-.|++-+. ...+.+.+-..+..|++.- +..++ .....+
T Consensus 414 dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~----lLmK~v 488 (791)
T KOG1222|consen 414 DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL----LLMKVV 488 (791)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch----HHHHHH
Confidence 7655555666788888877654 445555555544445666433 2345666666677777653 33332 245667
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHH
Q 042204 336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIK 413 (559)
Q Consensus 336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~ 413 (559)
.|++.+.......+++ .+.-|...+....+...-.++..+++|++..+-+..+.+.+.+++|-+-..|+.+ ..+++
T Consensus 489 RniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLv 566 (791)
T KOG1222|consen 489 RNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLV 566 (791)
T ss_pred HHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhh
Confidence 7888766544444554 4566777776665777888999999999876556556666788999999999865 56788
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHH
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVE 491 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~ 491 (559)
...+.+++.++. +......+...++++.|+++|+. .|.+.+..++-.+..++..... ..-++.
T Consensus 567 L~~vi~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~mik 631 (791)
T KOG1222|consen 567 LQIVIACGTMAR--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIK 631 (791)
T ss_pred hHHHHHhhhhhh--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHh
Confidence 888888888887 34566677788999999999965 5778888888888888866322 345566
Q ss_pred HhccHHHHHHHhcCCCHHHHHHHHHH
Q 042204 492 EAEGLEKIENLQSHENNEIHEKSVKI 517 (559)
Q Consensus 492 ~~g~l~~l~~L~~~~~~~v~~~a~~i 517 (559)
+...-..+..|+++.|.+|++-+...
T Consensus 632 et~~~AylIDLMHDkN~eiRkVCDn~ 657 (791)
T KOG1222|consen 632 ETALGAYLIDLMHDKNAEIRKVCDNA 657 (791)
T ss_pred hccchHHHHHHHhcccHHHHHHHHHH
Confidence 66666788999999999998755433
No 17
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-13 Score=133.61 Aligned_cols=389 Identities=15% Similarity=0.148 Sum_probs=285.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..+..+|++|..++.++.......|.++.-. .++...+.+.|+|..|++++...+ |+++...+..|.|++. +...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence 4678899999988888888888888886333 678889999999999999999999 9999999999999999 77899
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..++..|.+|.|..+|.+... ...|+..|..++.++ ..+.++.....++.+...+....+..+-...+..--|+|.+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 999999999999999987542 234777788887664 45778888888898888876666666666666666788888
Q ss_pred CCCCcHhhHhchHHHHHHh-hccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 042204 259 MPRPIFEQVRPALPVLAQL-VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIG 336 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~ 336 (559)
+...........+..|.+. +++.|+-+ ...+++++.+.......+++ .+..|...++.. ++.....++.+++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 7555555555666666653 45555543 34677888776655555654 466777776654 4567888999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHH
Q 042204 337 HIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIK 413 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~ 413 (559)
|+.-.+-...+.+.+...+|++-..|+..- ..++..+..-+++.++. .......+..+++++.|+++|+. .|.+..
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 998866667777778899999999997542 23456666666666643 23333445578999999999975 477888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE 492 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~ 492 (559)
...++.+..+..+ ...++++++ ...-..|+++.+..+.+++.+|-.+|.-+......+.+.-. .+ ......
T Consensus 610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~----~E--kFrwHN 681 (791)
T KOG1222|consen 610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA----GE--KFRWHN 681 (791)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh----hh--hcccch
Confidence 8899999998886 234455554 45567899999999999999999999888877665533200 00 111234
Q ss_pred hccHHHHHHHhcCCCHH
Q 042204 493 AEGLEKIENLQSHENNE 509 (559)
Q Consensus 493 ~g~l~~l~~L~~~~~~~ 509 (559)
+..++.+|.-|..+++.
T Consensus 682 sQWLeMVEs~q~ddsEq 698 (791)
T KOG1222|consen 682 SQWLEMVESQQRDDSEQ 698 (791)
T ss_pred hHHHHHHHHhhccchhh
Confidence 45666777666555544
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.68 E-value=1.8e-14 Score=154.33 Aligned_cols=365 Identities=18% Similarity=0.184 Sum_probs=278.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCCch
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED--YPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.....+..++...|.+ +-++.|..+.+. .+....+...|.+|.|+++|--++ ..+.+..|-.+|.||....++
T Consensus 197 ets~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 197 ETSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred hhhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 3445677777777754 344566776443 566788899999999999997544 257889999999999998887
Q ss_pred hHHHHHhCCCHHHHHH----------hhCC-----CCHHHHH---HHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch
Q 042204 177 DTKVVIDHGAVPIFVK----------LLAS-----PNDDIRE---QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE 238 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~----------lL~~-----~~~~v~~---~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~ 238 (559)
....-.+..++..|-+ .+.. .+..+.. .|+.+|-.++.+ .++|...-+.|+++.+.+++.-
T Consensus 272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~v 350 (2195)
T KOG2122|consen 272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQV 350 (2195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHH
Confidence 7654444444444332 2222 1122222 456666666555 6779999999999999998742
Q ss_pred -----------hhhHhHHHHHHHHHHHhhcCCCCC--cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHH
Q 042204 239 -----------HAKLSMLRTATWTLSNFCRGMPRP--IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305 (559)
Q Consensus 239 -----------~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~ 305 (559)
.....+++.+..+|.||..++... ......+++..++..|.+..+++..-...+|.||+-..+....
T Consensus 351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK 430 (2195)
T KOG2122|consen 351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK 430 (2195)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence 224578999999999999998332 3334589999999999888888888888999999965554444
Q ss_pred H-HHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHhcCCC---chhHHHHHHHHHH
Q 042204 306 A-VIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC-GALPYLLVLLIHSH---KKSIKNHACWTIS 379 (559)
Q Consensus 306 ~-~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~-g~l~~L~~lL~~~~---~~~v~~~a~~~L~ 379 (559)
. +-+.|-+-.|+.. |...++......|.+|+||+.+..+....+-.- |++..|+.+|.... .-.|.+.|..+|.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 4 5556877777776 444566778889999999998777665555443 99999999996541 3456777888888
Q ss_pred Hhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHH
Q 042204 380 KITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIV 456 (559)
Q Consensus 380 nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~ 456 (559)
|+.. ...++.|.+.+++.+..|+..|++...-+..++|.+|.||+.. +++..++|.+.|++..|.+++++++..+.
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa 589 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIA 589 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhh
Confidence 8765 5778888899999999999999999999999999999999987 77888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 042204 457 TVCLKGLENILKVG 470 (559)
Q Consensus 457 ~~~l~~l~~il~~~ 470 (559)
+-...+|.|++..-
T Consensus 590 ~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 590 MGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhcCC
Confidence 99999999999765
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.67 E-value=3.6e-15 Score=142.24 Aligned_cols=327 Identities=15% Similarity=0.116 Sum_probs=242.2
Q ss_pred HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHH
Q 042204 138 VIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-------PNDDIREQAVWALG 210 (559)
Q Consensus 138 ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~ 210 (559)
-++++++..|.+..++++ .++..+..++|+|++..+.+.|..+.+.|+-..++..|+. .+.+...-+...|.
T Consensus 83 ~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred hhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 356778888888888887 7999999999999999999999999999998888887764 23466677888899
Q ss_pred HHhCCCchhhhhhhccCCHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcCCC--CCcHhhHhchHHHHHHhhcc-CCHhHH
Q 042204 211 NVAGDSPRCRDLVLSEEALIPLLAQLN-EHAKLSMLRTATWTLSNFCRGMP--RPIFEQVRPALPVLAQLVHS-NDKEVL 286 (559)
Q Consensus 211 nl~~~~~~~r~~i~~~g~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~-~d~~v~ 286 (559)
|..-++...|..+.+.|+++.|...+- ...+....+.....+.||..-.. -..+.....+...+++++.+ -.+++.
T Consensus 162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~ 241 (604)
T KOG4500|consen 162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDID 241 (604)
T ss_pred HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence 999999999999999999999988773 12233333333333333222110 01111223344445555543 356677
Q ss_pred HHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCC-------cchhhHHHHHHHhhcCChHHHHHHHhCC-ChHH
Q 042204 287 TDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSS-------SVLSPALQTIGHIVAGDDFQTQCIINCG-ALPY 357 (559)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~-------~v~~~al~~L~nl~~~~~~~~~~~~~~g-~l~~ 357 (559)
+-+...+.+.++++.-. -.+.+.|++..+++++.. ... .....++..+.-+.+|++.. +.+...+ +++.
T Consensus 242 eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~ 319 (604)
T KOG4500|consen 242 EMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDF 319 (604)
T ss_pred hHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHH
Confidence 77888888888665533 357788999999988876 221 12334555555666776654 3344444 8999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-----CChhHHHHHHHHHHHHhcCCCHHHH
Q 042204 358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-----AEINIKNWAAWAISNATSGGSHEQI 432 (559)
Q Consensus 358 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~ 432 (559)
+.+++.++ +....-.+..+++|+++. ++.+.++++.+++..|+++|.. ++.+++..++.||.|+... ..+.
T Consensus 320 ~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP--v~nk 395 (604)
T KOG4500|consen 320 LESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP--VSNK 395 (604)
T ss_pred HHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc--CCch
Confidence 99999999 999999999999999765 5667788899999999999964 4678999999999999873 3566
Q ss_pred HHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 433 ~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
..+...|+.+.+...++...|.+...-+..+..+....+
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 678899999999999999999999999988887765443
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.8e-13 Score=126.80 Aligned_cols=317 Identities=16% Similarity=0.186 Sum_probs=246.3
Q ss_pred hcCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhC
Q 042204 140 QSGVVPRFVEFL---MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAG 214 (559)
Q Consensus 140 ~~g~v~~Lv~lL---~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 214 (559)
..|..+.++..+ .+++ ..+...++.+|..+..+.|+ +.+..++..++.+|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345555554433 3444 67888899999888887665 4567788999998864 677888878888888887
Q ss_pred CCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC-c---------HhhHhchHHHHHHhhcc-CCH
Q 042204 215 DSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP-I---------FEQVRPALPVLAQLVHS-NDK 283 (559)
Q Consensus 215 ~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~-~---------~~~~~~~l~~L~~lL~~-~d~ 283 (559)
....+|+.+.+.++++-+...|.......+.+.++|++.-|...+..+ . ...-.+++..|++.++. -||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 778889999999998888878866666679999999999998776321 1 11224567888888874 479
Q ss_pred hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC-Ccch---hhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS-SSVL---SPALQTIGHIVAGDDFQTQCIINCGALPYLL 359 (559)
Q Consensus 284 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~---~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~ 359 (559)
.++..++.+|..|+- .++..+.+.+.|.+..|++++.+.+ ...+ ..++..|..++. ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 999999999999994 4567788999999999999998843 3333 567888888775 556777899999999999
Q ss_pred HHh-cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 042204 360 VLL-IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKYLV 436 (559)
Q Consensus 360 ~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 436 (559)
.++ ++..+|.|..+++.+++-++...|++-...++.|+-...++.++.. ...+|++|+|+|.|++.. +.++...++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 987 4444899999999999999999999999999999999999988754 457999999999999987 456666666
Q ss_pred HcCChHHHHhcCCCCChHHHHHHHHHHHH
Q 042204 437 REKCIKPLCDLLPCANPTIVTVCLKGLEN 465 (559)
Q Consensus 437 ~~~~l~~L~~lL~~~d~~v~~~~l~~l~~ 465 (559)
..| ++.|+..-....+.....+-.+|..
T Consensus 414 ~~G-iE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 414 ANG-IEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred hcc-HHHHHHHHHhcCccHHHHHHHHHHh
Confidence 654 7777777767676666666666654
No 21
>PRK09687 putative lyase; Provisional
Probab=99.67 E-value=8.4e-15 Score=140.58 Aligned_cols=255 Identities=13% Similarity=0.114 Sum_probs=202.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
-++.|..+|.+.+ ..+|..|+++|..+.. ..+++.+..++.++++.+|..++|+|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4678899999888 8999999999998865 23677888899999999999999999998432211
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 302 (559)
....++.|..++.++++..++..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11246677777668888999999999999997654222 12355667777888899999999999987652 1
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 303 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
..++.|+.+|.++++.|+..|+.+||.+...++ .+++.|+.+|.+. +..||..|+|+|+.+
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~- 219 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR- 219 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc-
Confidence 257999999999999999999999999944333 3457799999988 999999999999987
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHH
Q 042204 383 AGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLK 461 (559)
Q Consensus 383 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~ 461 (559)
+++. .+|.|++.|.+++ ++..|+.+|+++-. ++ .++.|..+++ .+|+.++..+.+
T Consensus 220 -~~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 220 -KDKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred -CChh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHHH
Confidence 3343 7889999998866 67788889888754 22 5888888886 789999999998
Q ss_pred HHHH
Q 042204 462 GLEN 465 (559)
Q Consensus 462 ~l~~ 465 (559)
++..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8764
No 22
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=3.8e-14 Score=131.30 Aligned_cols=310 Identities=13% Similarity=0.124 Sum_probs=248.4
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCH
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASKTSEDTKVVIDHGAV 187 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i 187 (559)
.+++....++++..+..+.... ..+.+..+...++.+|... ++.++-...+.++..-+..+..+|+.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4567777788888887765432 2345667888888888643 226888889999999998899999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHHhCCCc---------hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 188 PIFVKLLAS-PNDDIREQAVWALGNVAGDSP---------RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 188 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+.+.+.|.. ....+.+.+.|++.-+..++. .....+...|++..|+..+.-..++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999987765 444677779999999986553 2345677778899999998766789999999999999987
Q ss_pred CCCCCcHhhHhchHHHHHHhhcc-CCHh---HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHS-NDKE---VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPA 331 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~-~d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~a 331 (559)
...........|++..++.++.+ ++.. ....+|..|+.|+ ++++....+++.|+.+.++.++.. +++.|...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 65444445568999999999986 3444 4467888888888 555567899999999999988653 578899999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204 332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI 410 (559)
Q Consensus 332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~ 410 (559)
+.+++-++-..++....+++.|+-...++.++ +|....+++.|||.+.|++..+.++...++.. +++.|+..-...++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999888888889999999999999885 45467899999999999999888888888776 68889998888888
Q ss_pred hHHHHHHHHHHHHhc
Q 042204 411 NIKNWAAWAISNATS 425 (559)
Q Consensus 411 ~v~~~a~~aL~nl~~ 425 (559)
.....|-.||..+-.
T Consensus 430 tce~~akaALRDLGc 444 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHhcCc
Confidence 888888888887754
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.2e-14 Score=145.51 Aligned_cols=358 Identities=16% Similarity=0.212 Sum_probs=231.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-h---cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-Q---SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT 174 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~---~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 174 (559)
+.+|.|.+.|.+.+...+.-|..+|.++.... .+..+.-. . .-.+|+++++.++++ |.+|..|+.|+..+....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 47899999999999888888999999874331 11111100 0 126899999999998 999999999998877633
Q ss_pred chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc-cCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204 175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS-EEALIPLLAQLNEHAKLSMLRTATWTLS 253 (559)
Q Consensus 175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~l~~Ll~ll~~~~~~~~~~~a~~~L~ 253 (559)
++.-..-+ ...+..+..+-.+++++||.+.+.+|..+....+. ..+.. .++++.++... ++.+.++.-.||....
T Consensus 206 ~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 206 TQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL 281 (885)
T ss_pred cHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence 22211111 23566666677789999999999999999765443 11111 23455666555 6778889999999999
Q ss_pred HhhcCCCC--CcHhhHhchHHHHHHhhccCCHhH--HH------------------------------------------
Q 042204 254 NFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEV--LT------------------------------------------ 287 (559)
Q Consensus 254 nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v--~~------------------------------------------ 287 (559)
.++...-. .-......++|.|+.-+...+.++ ..
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 99987611 112234567777665432211100 00
Q ss_pred ----HHHHHHHHhccCChhHHHHHHHhC----cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHH
Q 042204 288 ----DACWALYFLSNGKNDKIQAVIEAG----VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPY 357 (559)
Q Consensus 288 ----~a~~~L~~l~~~~~~~~~~~~~~g----~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~ 357 (559)
..-|-|+..+...-+....+.... ++|.|-+.|.++++.+++.+..++|.|+.|.-.. +..+ .++|.
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~ 438 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPF 438 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHH
Confidence 001222222211111111222223 4555666677889999999999999999876532 2222 46899
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHH
Q 042204 358 LLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYL 435 (559)
Q Consensus 358 L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 435 (559)
|+.+|.+. .+-||.-+||+|+..+.. ..+ .+..... ++..|++.+-+++.+||+.||.|+..+-..+..+.+.++
T Consensus 439 l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l 515 (885)
T KOG2023|consen 439 LLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL 515 (885)
T ss_pred HHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999998 999999999999998751 111 1122211 455666677788999999999999999988777777765
Q ss_pred HHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 436 VREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 436 ~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
-. ++..|+..+..-..+-.....+++..+.+.-
T Consensus 516 ~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 516 EY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred HH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 43 5666666664433333445566777766553
No 24
>PRK09687 putative lyase; Provisional
Probab=99.63 E-value=1.1e-13 Score=132.99 Aligned_cols=254 Identities=15% Similarity=0.120 Sum_probs=199.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.|...|.+.+..++..+++.|..+-. ..+++.+..++++++ +.+|..|+|+|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 46788999999999999999999988522 236788888888888 99999999999998762211
Q ss_pred HHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 180 VVIDHGAVPIFVKL-LASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 180 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
...+++.|..+ ++++++.|+..|+.+|++++...+.. ...++..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 12356788876 67899999999999999996433211 111344455555 56688999999999976542
Q ss_pred CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
...++.|+.++.++++.|+..|+.+|+.+...++ .+++.|+..|.+.++.|+..|++.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3478999999999999999999999999943333 2467899999999999999999999986
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-cCChhHHHHHH
Q 042204 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-NAEINIKNWAA 417 (559)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~~a~ 417 (559)
-. . .+++.|+..|.++ + ++..|+.+|+++ +++. .+|.|..++. ++|.+++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~i--g~~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGEL--GDKT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhc--CCHh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 43 2 4689999999877 4 788999999999 4443 7889999996 77999999999
Q ss_pred HHHHH
Q 042204 418 WAISN 422 (559)
Q Consensus 418 ~aL~n 422 (559)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.4e-12 Score=139.32 Aligned_cols=396 Identities=17% Similarity=0.166 Sum_probs=270.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.++.+++..+|+++..|..|+..|..+...-.+.....+ ..+.+.|.+.+.+++.+ +|..|+++++.++...+..+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence 3678888999999999999999999987543212111111 12567788888888855 99999999999988554233
Q ss_pred HHHHh-CCCHHHHHHhh----CCCCHHHHHHHHHHHHHHhCCCchh-hhhhhccCCHHHHHHHhc-hhhhHhHHHHHHHH
Q 042204 179 KVVID-HGAVPIFVKLL----ASPNDDIREQAVWALGNVAGDSPRC-RDLVLSEEALIPLLAQLN-EHAKLSMLRTATWT 251 (559)
Q Consensus 179 ~~i~~-~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~l~~Ll~ll~-~~~~~~~~~~a~~~ 251 (559)
...-. ...+|.++..+ ...+.+....++.+|..++...|.+ +..+.+ ++...+.... +.-+..++..|+.+
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHH
Confidence 22221 23566666655 4467777888999999998777663 222211 3333344442 23467888999999
Q ss_pred HHHhhcCCCCC---cHhhHhchHHHHHHhhccC--C--------------HhHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 042204 252 LSNFCRGMPRP---IFEQVRPALPVLAQLVHSN--D--------------KEVLTDACWALYFLSNGKNDKIQAVIEAGV 312 (559)
Q Consensus 252 L~nL~~~~~~~---~~~~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 312 (559)
+..+++..|.. .......+++.++.++... | ..--..|..+|-.++.+-+.. .+-.-+
T Consensus 273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~ 349 (1075)
T KOG2171|consen 273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPL 349 (1075)
T ss_pred HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHH
Confidence 99988874321 1223456667766665311 1 112344556666665443311 111225
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV 392 (559)
Q Consensus 313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 392 (559)
++.+-.++.++++.-|..++.+|+.++.|........++ .+++..+..|+++ +|.||..||.+++.++..-...++.-
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 677788899999999999999999999999877665554 6888888999999 99999999999999988655666666
Q ss_pred HHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH-HHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 393 IDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIK-PLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 393 i~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
...-+.+.|+..+.+. +++++..|+.++.|++....++.+..... +++. .|..++.+..+.+++.+..+|..+....
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 6666888999998775 67999999999999999877666554222 3555 4444567788999999999999998776
Q ss_pred hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCC-HHHHHHHHHHHH
Q 042204 471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHEN-NEIHEKSVKILE 519 (559)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~-~~v~~~a~~il~ 519 (559)
+.. ..+|...+. +.|.+...+.+ .+.+....+.++
T Consensus 507 ~~~---------F~pY~d~~M-----p~L~~~L~n~~~~d~r~LrgktmE 542 (1075)
T KOG2171|consen 507 QEK---------FIPYFDRLM-----PLLKNFLQNADDKDLRELRGKTME 542 (1075)
T ss_pred hhh---------hHhHHHHHH-----HHHHHHHhCCCchhhHHHHhhHHH
Confidence 542 334555553 55555544433 555554444443
No 26
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.59 E-value=1.7e-13 Score=147.04 Aligned_cols=326 Identities=18% Similarity=0.166 Sum_probs=246.4
Q ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHH----------HhhcC------CCCHH
Q 042204 98 LEIFAAMVAGVWSD---DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFV----------EFLMR------EDYPQ 158 (559)
Q Consensus 98 ~~~l~~lv~~L~s~---~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv----------~lL~~------~~~~~ 158 (559)
.+-+|.+++.|... +.+.+..|-.+|.+++..+ .+...-=.+..+++.|- ..++. +....
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~ 312 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDE 312 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 46788999999854 4567788888999987654 22211111222333332 12221 11123
Q ss_pred HHH-HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHHHHhCCCchhh-hhhh
Q 042204 159 LQY-EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS------------PNDDIREQAVWALGNVAGDSPRCR-DLVL 224 (559)
Q Consensus 159 ~~~-~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~r-~~i~ 224 (559)
-+. .|+.+|-+++. +.+.|..+.+.|++..+-+|+.- ....+|..+..+|.||...+...+ .++.
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 444 67778888888 89999999999999999887742 245789999999999996554444 4555
Q ss_pred ccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH--hchHHHHHH-hhccCCHhHHHHHHHHHHHhccCCh
Q 042204 225 SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV--RPALPVLAQ-LVHSNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 225 ~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~--~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
..|++..++..| .....++......+|.||+-.......... .|-+-.|+. .++...+..+..++.+|+||+.+..
T Consensus 392 ~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 392 QRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 678999999999 455557888889999999977643333333 344444544 3566777889999999999998777
Q ss_pred hHHHHHHHh-CcHHHHHHhhCCC----CCcchhhHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 042204 302 DKIQAVIEA-GVCPRLVELLGHR----SSSVLSPALQTIGHIVA---GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNH 373 (559)
Q Consensus 302 ~~~~~~~~~-g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~ 373 (559)
++...+... |.+..|+.+|... ...+.+.+-.+|.|.+. ..+.+.+.+.+++++..|++.|++. +..+...
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence 776666664 8999999999864 34578888788777654 3455777888999999999999999 9999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
+|.+|.||.+.+++..+.+++.|.++.|.+++.+.+..+..-++.+|.|+...-
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999998753
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.57 E-value=2.7e-12 Score=122.90 Aligned_cols=403 Identities=11% Similarity=0.061 Sum_probs=288.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~ 172 (559)
+.++.+.+...|+|.++..+..++|.++.. .+++.+..+.+.|+-..++..|+. +.+.+.-..+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCy-dn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICY-DNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhc-cCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 577888888889999999999999999744 558999999999997878777764 1224666777788999999
Q ss_pred CCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204 173 KTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT 249 (559)
Q Consensus 173 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~ 249 (559)
++.+.+..+++.|+++.|...+.- .+....+.+....+|+..-- ....+...+......+++++....+++..+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999988753 67777788887777776422 223345556667778888887667778888888
Q ss_pred HHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-CC-------HhHHHHHHHHHHHhccCChhHHHHHHHhC-cHHHHHHhh
Q 042204 250 WTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-ND-------KEVLTDACWALYFLSNGKNDKIQAVIEAG-VCPRLVELL 320 (559)
Q Consensus 250 ~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~l~~L~~lL 320 (559)
..|...+.++...-.....|.+..+..+++. .+ ......++....-+..+++. .+.+...+ +++.+...+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 8888888876444444556777888887764 22 22334455555555555554 45666666 899999999
Q ss_pred CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC----CchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204 321 GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS----HKKSIKNHACWTISKITAGNREQIQAVIDAG 396 (559)
Q Consensus 321 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~ 396 (559)
.+++...+..+.-+|||+++.++..+ .+++.+++..|+++|... .+..++..++.+|.|+.-. ..+...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999776554 577889999999999541 1567788899999999753 33456788999
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChH-HHHHHHHHHHHHHHhhhhhc
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPT-IVTVCLKGLENILKVGEAEK 474 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~-v~~~~l~~l~~il~~~~~~~ 474 (559)
+.+.++..++...|.++..-...+.-+... -+.....+.+ ...++.|++--+++|-. +.-...+.+.-+++.+-.
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~-- 479 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY-- 479 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh--
Confidence 999999999999888888877777655543 2222223332 23455666655666643 555555555555544221
Q ss_pred ccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 042204 475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517 (559)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~i 517 (559)
....-.+-+.||++.........+-..+..|.-.
T Consensus 480 ---------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVa 513 (604)
T KOG4500|consen 480 ---------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVA 513 (604)
T ss_pred ---------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence 1134445667777777777666666666555433
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=1.4e-12 Score=146.04 Aligned_cols=276 Identities=16% Similarity=0.167 Sum_probs=219.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.|++.|.++++.++..|+..|..+-. .+.++.|+..|++++ +.+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence 467899999999999999999999998632 236899999998888 899999999999885421
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
...+.|...|.++++.+|..|+.+|+.+... ....++..| .+.+..++..++.+|..+-.
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 1236788889999999999999999987422 123466666 78888999999999987621
Q ss_pred CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
.+.|..++.++++.|+..++.+|+.+..... ..++.|..++.++++.+|..|+.+|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1346678899999999999999999874322 2367888999999999999999999988
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW 418 (559)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~ 418 (559)
.... .+.+.+...|.++ ++.||..|+++|+.+.. ++ .++.|+.+|.+++..||..|++
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHH
Confidence 5421 1235678889888 99999999999988732 22 5688999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHH
Q 042204 419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465 (559)
Q Consensus 419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~ 465 (559)
+|..+. +++. ..+.|...+++.|+.|+..+..+|..
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999962 2333 35667788899999999999998863
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=5.3e-13 Score=125.18 Aligned_cols=238 Identities=16% Similarity=0.149 Sum_probs=185.1
Q ss_pred hchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH
Q 042204 268 RPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT 346 (559)
Q Consensus 268 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 346 (559)
.+-++.|+.+|. +.|+.++..++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 556788899998 568999999999999988544 455778888999999999999999999999999999998765443
Q ss_pred HHHHhCCChHHHHHHh-cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 347 QCIINCGALPYLLVLL-IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
.++. .++.+...+ .++-+..++..+..+|.|++.. .+. +.++. +.++.++.+|..++..+|..++.+|.|++.
T Consensus 90 --~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 90 --QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred --HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 2232 355555543 3333678999999999999754 222 34442 379999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhhhhhccccc-ccCcchHHHHHHHHhc-cHHHHHHH
Q 042204 426 GGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVGEAEKNMDT-AIGDVNQYAQLVEEAE-GLEKIENL 502 (559)
Q Consensus 426 ~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~~~~~~~~~-~~~~~~~~~~~i~~~g-~l~~l~~L 502 (559)
++...+.++..+++..++.+++.. +.++...++..+.||-..-........ ...........+.+.+ .-++|..|
T Consensus 164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l 241 (254)
T PF04826_consen 164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL 241 (254)
T ss_pred --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence 678899999999999999999875 678899999999998654333211110 0113445556777776 77899999
Q ss_pred hcCCCHHHHHHH
Q 042204 503 QSHENNEIHEKS 514 (559)
Q Consensus 503 ~~~~~~~v~~~a 514 (559)
..|++++|+++.
T Consensus 242 ~~h~d~ev~~~v 253 (254)
T PF04826_consen 242 ANHPDPEVKEQV 253 (254)
T ss_pred HcCCCHHHhhhc
Confidence 999999999874
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=9.5e-12 Score=133.12 Aligned_cols=394 Identities=18% Similarity=0.196 Sum_probs=270.6
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 100 IFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 100 ~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.++.|...++ +.|++.+..|+..+|+++.+. -+.+..=.+..+-..++..+.+...+.+|..-+.++..|+...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 4566777666 678999999999999998762 2222222333455566666666555899999999999999843222
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHh
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL 255 (559)
. =.++++.|.+..+++++..|+.|+..|.++...-... ..+.+..+..++. .+.+..++..++.++..+
T Consensus 115 ~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~ 186 (1075)
T KOG2171|consen 115 K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAF 186 (1075)
T ss_pred c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 1 1256888999999999999999999999997543321 1223344444443 334444888899998888
Q ss_pred hcCCC--CCcHhhHhchHHHHHH----hhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcc
Q 042204 256 CRGMP--RPIFEQVRPALPVLAQ----LVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSV 327 (559)
Q Consensus 256 ~~~~~--~~~~~~~~~~l~~L~~----lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v 327 (559)
+...+ ..........+|.++. .+..+|......++.+|..+....+......+.. ++.....+..+. ++.+
T Consensus 187 ~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~ 265 (1075)
T KOG2171|consen 187 AEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSI 265 (1075)
T ss_pred HHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHH
Confidence 76653 2223334555665544 4556777788888888888887766555443332 344444444432 3445
Q ss_pred hhhHHHHHHHhhcCChHHH---------------------------------------------HHHH-----hCC----
Q 042204 328 LSPALQTIGHIVAGDDFQT---------------------------------------------QCII-----NCG---- 353 (559)
Q Consensus 328 ~~~al~~L~nl~~~~~~~~---------------------------------------------~~~~-----~~g---- 353 (559)
|..|+.+|..++...+... ...+ ..|
T Consensus 266 R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v 345 (1075)
T KOG2171|consen 266 RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV 345 (1075)
T ss_pred HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe
Confidence 6666655555544311100 0011 011
Q ss_pred ---ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHH
Q 042204 354 ---ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE 430 (559)
Q Consensus 354 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 430 (559)
+++.+-.+|.++ +..-|+.|..+|+-++.|.++.+...++. +++.+++.|.+++++||-.|+.|++.++..-.++
T Consensus 346 ~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 255566677888 89999999999999999999988887765 9999999999999999999999999999976665
Q ss_pred HHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHH
Q 042204 431 QIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE 509 (559)
Q Consensus 431 ~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~ 509 (559)
..++ ....+++.|+..+++. ++++...+..++-+++....+. ...+|...+.+. ++..|.+++.+.
T Consensus 424 iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--------~l~pYLd~lm~~----~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 424 IQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--------ILEPYLDGLMEK----KLLLLLQSSKPY 490 (1075)
T ss_pred HHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHHHH----HHHHHhcCCchh
Confidence 5554 4556788899998775 5699999999999988765543 234566555432 777888899999
Q ss_pred HHHHHHHHHH
Q 042204 510 IHEKSVKILE 519 (559)
Q Consensus 510 v~~~a~~il~ 519 (559)
|++.+...|-
T Consensus 491 v~e~vvtaIa 500 (1075)
T KOG2171|consen 491 VQEQAVTAIA 500 (1075)
T ss_pred HHHHHHHHHH
Confidence 9988776664
No 31
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.56 E-value=4.9e-12 Score=127.47 Aligned_cols=406 Identities=15% Similarity=0.083 Sum_probs=274.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
.++..+...+++....|..-..+++.+. +++...+++.|.+|.++.+++..+ .++++.+.+-++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3455666778888888998999987764 666668999999999999987644 26788888888899999999999999
Q ss_pred HhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhc---cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 182 IDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLS---EEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~---~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
.+.+.++.|+++|.+++ ..+++.++.++.++...++. ++.... ..++..+..++ ........+.-+...+++|.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence 99999999999999988 88999999999999876643 222211 11233333333 22333344445555666665
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHH---HhccCChhHHHH----HHHhCcHH--HHHHhhCCCCCcch
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY---FLSNGKNDKIQA----VIEAGVCP--RLVELLGHRSSSVL 328 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~~~~~~----~~~~g~l~--~L~~lL~~~~~~v~ 328 (559)
.........-.++.+.+.-++.......+..|+.+++ .+..+++..... ..+.|+.+ .+.+++++++...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 5433333334677777777777778889999999999 776666544333 44557776 45566777777777
Q ss_pred hhHHHHHHHhhcCChH-----------------HHHH----------------------------------HHhCCChHH
Q 042204 329 SPALQTIGHIVAGDDF-----------------QTQC----------------------------------IINCGALPY 357 (559)
Q Consensus 329 ~~al~~L~nl~~~~~~-----------------~~~~----------------------------------~~~~g~l~~ 357 (559)
..++.++.++...+.. ..+. ..+...++.
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 7777777777654400 0000 000111111
Q ss_pred HHHHhcCC---------------------------------------------------CchhHHHHHHHHHHHhhcCCH
Q 042204 358 LLVLLIHS---------------------------------------------------HKKSIKNHACWTISKITAGNR 386 (559)
Q Consensus 358 L~~lL~~~---------------------------------------------------~~~~v~~~a~~~L~nl~~~~~ 386 (559)
+..++... .+...+..||..+-+++..-.
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 11111100 022333334444444432211
Q ss_pred HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH
Q 042204 387 EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI 466 (559)
Q Consensus 387 ~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i 466 (559)
.....+-+..+..+|+.++..++..++..+..+|+|++..-+ .....++..|+++.+.+++.+.++.++..++|+|.++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 111112245689999999999999999999999999987533 4456778999999999999999999999999999998
Q ss_pred HHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 467 LKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 467 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
+-..+.. ....+..-=+...|..+.++++..|++.+.+++.++...
T Consensus 489 ~f~~de~------------~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 489 MFNCDEE------------EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcchHH------------HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 7443321 222222222357888999999999999999999987655
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=9.3e-13 Score=123.55 Aligned_cols=196 Identities=19% Similarity=0.229 Sum_probs=162.8
Q ss_pred HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204 139 IQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 139 i~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
.+.+-++.|+.+|+...+|.+++.|..++++.+. .+..+..+.+.|+++.+..+|.++++.+++.|+++|.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4566789999999977669999999999999887 789999999999999999999999999999999999999877554
Q ss_pred hhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 219 CRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
+..+.. .+..++..+... -+..++..++.+|.||+..... ...+...+|.++.+|..++..++..++++|.||+
T Consensus 88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 444432 466666655333 3678889999999999866422 3445678999999999999999999999999999
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcC
Q 042204 298 NGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 298 ~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~ 341 (559)
.. +...+.++.++++..++.++... +..+...++..+.||..+
T Consensus 163 ~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 EN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 65 44667889999999999999886 567888999999999653
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.52 E-value=3.9e-12 Score=142.55 Aligned_cols=277 Identities=15% Similarity=0.158 Sum_probs=218.7
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh
Q 042204 140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC 219 (559)
Q Consensus 140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 219 (559)
....++.|++.|.+++ +.+|..|+.+|+.+.. .++++.|+..|+++++.+|..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 3456789999999988 9999999999998764 2478999999999999999999999998853222
Q ss_pred hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204 220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 220 r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 299 (559)
..+.+...| .+.++.++..++.+|..+.... ...++..|.++|+.++..|+++|+.+-.
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124566666 5678899999999888865321 2346778899999999999999997631
Q ss_pred ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 300 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
.+.|..++.++++.||..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1345678899999999999999998865322 2367888999988 9999999999999
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC 459 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~ 459 (559)
++... +. .++.++..|.++++.||..|+++|..+... ..++.|..+|+++++.|+..+
T Consensus 801 ~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence 88432 11 335678889999999999999999876431 246889999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 042204 460 LKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE 519 (559)
Q Consensus 460 l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~ 519 (559)
..+|..+- .. ....+.|....++++.+|+..|...|+
T Consensus 859 ~~aL~~~~-~~----------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRWP-GD----------------------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhccC-CC----------------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99998851 00 112466778888999999999998886
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=1.3e-12 Score=109.96 Aligned_cols=119 Identities=32% Similarity=0.567 Sum_probs=110.2
Q ss_pred HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC
Q 042204 137 EVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS 216 (559)
Q Consensus 137 ~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 216 (559)
.+++.|+++.++++|.+++ +.++..++++|.+++..+++....+++.|+++.++.+|.++++.++..|+|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999988 899999999999999988999999999999999999999999999999999999999988
Q ss_pred chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 217 ~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+..+..+...|+++.++..+ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888899999999999 55688999999999999873
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=6.1e-12 Score=126.34 Aligned_cols=347 Identities=14% Similarity=0.146 Sum_probs=229.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182 (559)
Q Consensus 103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 182 (559)
..+..+...++-++-..-..+..+++...-... ..++|.|.++|.+++ ...++.|..+|.+|+.++++.-+.-+
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhc
Confidence 455556555554444444455555554322222 247899999999998 68999999999999997666544322
Q ss_pred h----CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 183 D----HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 183 ~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
. .-.+|.++++.+++++.+|..|+.++..+.-..+.. .....+ ++..+..+- .+.+++++++.|.++..|..
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHH
Confidence 1 136899999999999999999999999887554331 222111 233333333 77899999999999999999
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCCCC-----------
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGHRS----------- 324 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~----------- 324 (559)
-.|........++++.++...++.|++|...||.....+++.+. ....+.. ..++|.|+.-+..++
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 88877777888999999999999999999999999999886652 2122211 135565554432110
Q ss_pred ---------------------------------------------CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204 325 ---------------------------------------------SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL 359 (559)
Q Consensus 325 ---------------------------------------------~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~ 359 (559)
+.+|...+.+|.-++.--. +.++. -++|.|-
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk 399 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLK 399 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHH
Confidence 2233333333332222111 11221 2355556
Q ss_pred HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH-HHHHHc
Q 042204 360 VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI-KYLVRE 438 (559)
Q Consensus 360 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~ 438 (559)
..|.+. .-.+|+.+..+++.|+.|.-...-.-+- .++|.|+.+|.+..+-||..+||.|+..+.....+.. .++..
T Consensus 400 ~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p- 476 (885)
T KOG2023|consen 400 EHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP- 476 (885)
T ss_pred HHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH-
Confidence 666676 8889999999999998764332222111 2799999999999999999999999988764211111 22211
Q ss_pred CChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 439 KCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
++..|...+-+.+.+|+++++.++..+-
T Consensus 477 -vL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 477 -VLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4555555556778888888888876654
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=1.4e-09 Score=116.98 Aligned_cols=338 Identities=12% Similarity=0.096 Sum_probs=230.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.+++.+.+.|.+.+....-.+.++.... ++.. +. +++.|.+-+++++ |.+|-.|+++|++|-. ++..
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--lL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--LL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--HH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence 46788999999999999998888888875432 2212 11 4778888888888 9999999999998876 3333
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.. +++.+.+.+.+.++.||..|+.++.++...+|+ .+...+.++.|..++ .+.++.+..+|+.+|..++..
T Consensus 139 e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence 32 356778888999999999999999999766654 445567788888877 788999999999999999876
Q ss_pred CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
.+. ........+..++..+..-++..+...+.+|......+.... ..++..+...|.+.++.|...|++++.++
T Consensus 210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 543 244446666777777777788888888888866442222221 24678888999999999999999999988
Q ss_pred hcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH------------------------
Q 042204 339 VAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI------------------------ 393 (559)
Q Consensus 339 ~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li------------------------ 393 (559)
.... +.....+.. .+-+.++.++ +. ++++|..++..|.-+....+.....-+
T Consensus 284 ~~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L 360 (746)
T PTZ00429 284 ASRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL 360 (746)
T ss_pred cCcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence 7643 222222211 2224455553 33 566666666665555443332221110
Q ss_pred -Hc----CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 394 -DA----GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 394 -~~----~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
+. .++..|.....+.|.+++..++.+|+.++..- +... ..++..|+++++.... ++..++..+.+|++
T Consensus 361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilr 433 (746)
T PTZ00429 361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVR 433 (746)
T ss_pred cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHH
Confidence 00 13344555555667889999999999998742 2222 2367778888865433 44456777777765
Q ss_pred hh
Q 042204 469 VG 470 (559)
Q Consensus 469 ~~ 470 (559)
..
T Consensus 434 ky 435 (746)
T PTZ00429 434 KY 435 (746)
T ss_pred HC
Confidence 43
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.43 E-value=5.9e-11 Score=119.83 Aligned_cols=371 Identities=13% Similarity=0.081 Sum_probs=240.5
Q ss_pred hHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204 97 RLEIFAAMVAGVWSDD--NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT 174 (559)
Q Consensus 97 ~~~~l~~lv~~L~s~~--~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 174 (559)
+.++++.+...++..+ .+.+.+.+..+..+.+++ ......+.+.+.++.+.++|..++...++...++++.++.+.+
T Consensus 49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 3578899998888665 355555666666666665 7889999999999999999998885689999999999999854
Q ss_pred chhHHH--HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204 175 SEDTKV--VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL 252 (559)
Q Consensus 175 ~~~~~~--i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L 252 (559)
+.+-.. .....+++.+..++..+.......-+....+.++. +..+....+.|+.+.+.-++ ...+...+..+..++
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~ 205 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALLCL 205 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence 333222 22234555555555534444444444444444443 34455556666666555444 555667788888888
Q ss_pred H---HhhcCCCCCcHhhH-----hchHH--HHHHhhccCCHhHHHHHHHHHHHhccCCh---------------------
Q 042204 253 S---NFCRGMPRPIFEQV-----RPALP--VLAQLVHSNDKEVLTDACWALYFLSNGKN--------------------- 301 (559)
Q Consensus 253 ~---nL~~~~~~~~~~~~-----~~~l~--~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--------------------- 301 (559)
+ ++..+.|....... .++.+ .+..++++.+...+..++.++.++...+.
T Consensus 206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q 285 (678)
T KOG1293|consen 206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ 285 (678)
T ss_pred hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence 8 66666543333222 33444 34455555555555555555544443220
Q ss_pred ------------------------------hHHHHHHHhCcHHHHHHhhC------------------------------
Q 042204 302 ------------------------------DKIQAVIEAGVCPRLVELLG------------------------------ 321 (559)
Q Consensus 302 ------------------------------~~~~~~~~~g~l~~L~~lL~------------------------------ 321 (559)
.......+....+.+++++.
T Consensus 286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~ 365 (678)
T KOG1293|consen 286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL 365 (678)
T ss_pred HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence 00000111112222222221
Q ss_pred ----------------------CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 322 ----------------------HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 322 ----------------------~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
+.+...+..|+-++-+++..-......+-...+..+|++++..+ +..|+..+..+|.
T Consensus 366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~ 444 (678)
T KOG1293|consen 366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC 444 (678)
T ss_pred chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence 12223344444444444432222211223446788999999888 8899999999999
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC 459 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~ 459 (559)
|+.-.-.+....++..|++..+..++.+.++.++..+.|+|.++..+++.+....+...=.-..+..+.+++|+.|++.|
T Consensus 445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 99986566678899999999999999999999999999999999998766555555554445667778899999999999
Q ss_pred HHHHHHHHHhhh
Q 042204 460 LKGLENILKVGE 471 (559)
Q Consensus 460 l~~l~~il~~~~ 471 (559)
+..+.|+.+..+
T Consensus 525 fqllRNl~c~~~ 536 (678)
T KOG1293|consen 525 FQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHhhcCcH
Confidence 999999987633
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=3.7e-11 Score=128.53 Aligned_cols=326 Identities=18% Similarity=0.203 Sum_probs=229.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
..+.+++.+.+.+...+.-+.-.+..+... ++..-.+ ++..+.+=|.+++ +.++..|+++|++++. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 567888888999999998888888887554 2221221 5677888888888 9999999999999985 55444
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
. +++.+.+++.++++.||..|+.++..+....|+. +... .++.+..++ .+.++.++..|+.++..+ +..
T Consensus 114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 3 4688899999999999999999999998765552 2222 477888888 778899999999999999 322
Q ss_pred CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204 260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 339 (559)
+..........++.|..++...++..+..++..+..++......... ..+++.+..++.+.++.|...|++++..+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11111445666777777778899999999999999998665544321 346778888888888888888888888776
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-cCChhHHHHHHH
Q 042204 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-NAEINIKNWAAW 418 (559)
Q Consensus 340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~~a~~ 418 (559)
.... .-..+++.|..++.++ ++.+|..++..|..++...+..+. .....+..+. +++..++..++.
T Consensus 260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~------~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF------NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG------THHHHHHHHHCSSSHHHHHHHHH
T ss_pred cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh------hhhhhhheecCCCChhHHHHHHH
Confidence 6433 1125677888888877 888999999988888765433222 1222233444 677888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhcC-CCCChHHHHHHHHHHHHHHHh
Q 042204 419 AISNATSGGSHEQIKYLVREKCIKPLCDLL-PCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~~d~~v~~~~l~~l~~il~~ 469 (559)
.+.+++.. .+... +++.|...+ +..|++++..+...+..+...
T Consensus 327 lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 327 LLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp HHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred HHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 88888753 33333 455566666 344666666666666555433
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.42 E-value=3.7e-12 Score=107.06 Aligned_cols=119 Identities=32% Similarity=0.497 Sum_probs=110.6
Q ss_pred HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN 385 (559)
Q Consensus 306 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 385 (559)
.+++.|+++.++++|.++++.++..++++|++++...+.....+++.|+++.+..+|.++ ++.++..|+|+|+|++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 356789999999999999999999999999999998888888889999999999999998 9999999999999999887
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 386 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
+.....+.+.|+++.|++++.+.+.+++..++|+|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7778888899999999999999999999999999999863
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.41 E-value=2.7e-10 Score=121.92 Aligned_cols=326 Identities=21% Similarity=0.186 Sum_probs=237.8
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 102 AAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 102 ~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.+.+.+. +...+..++..+..+...+ .+ . .-+.+.+++++.+.+ ...+.-+.-++..+...+++...
T Consensus 7 ~el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~-~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~ 78 (526)
T PF01602_consen 7 QELAKILNSFKIDISKKKEALKKLIYLMMLG-YD-I-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLI 78 (526)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CC-C-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHH
Confidence 3455555555 7777888887777665443 21 1 147788999999877 89999999999999997766332
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
. ++..+.+-|.++++.++..|+.+|++++ .++..+. .++.+.+.+ .++++.+++.|+.++..+.+..
T Consensus 79 l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 79 L-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp H-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHC
T ss_pred H-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccC
Confidence 2 4678888899999999999999999997 2332222 356677777 6778899999999999999875
Q ss_pred CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204 260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 339 (559)
|.... .. .++.+..++.+.|+.++..|+.++..+ ..+++... -.-...+..|.+++...++-.+..+++++..++
T Consensus 146 p~~~~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 146 PDLVE--DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HCCHH--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HHHHH--HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 43211 12 689999999999999999999999999 33332211 112235666777778888889999999999998
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHH
Q 042204 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWA 419 (559)
Q Consensus 340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~a 419 (559)
......... ..+++.+..++++. ++.|..+++.++..+... +. +. ..+++.|..++.+.++.++-.++.+
T Consensus 221 ~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~----~~-~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 221 PMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE----LL-QKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH----HH-HHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH----HH-HhhHHHHHHHhhcccchhehhHHHH
Confidence 877655421 35678889999888 999999999999988643 33 22 2368889999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 420 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
|..++... +.. +. .....+..+..++|..++..+++.+..+...
T Consensus 291 L~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 291 LSQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred HHHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 99998863 222 22 1122222333488999999999999998843
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.35 E-value=4.1e-10 Score=112.55 Aligned_cols=350 Identities=15% Similarity=0.182 Sum_probs=227.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC-----CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC
Q 042204 142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH-----GAVPIFVKLLASPNDDIREQAVWALGNVAGDS 216 (559)
Q Consensus 142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 216 (559)
..+..++.+|+....+++....+..+..+...++.....+.+. .....++.+|..++.-+...++..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 3567777788776667888888888888888777666666654 46778888999999999999999999998655
Q ss_pred chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC--CHhHHHHHHHHHH
Q 042204 217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN--DKEVLTDACWALY 294 (559)
Q Consensus 217 ~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~ 294 (559)
+.........-.+..+...+....+...+..++.+|..|.+.++.+......++++.|+.+|+.. +.+++..++-+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 43211110000223344444333346677778899999999876665554566899999999753 5688889999998
Q ss_pred HhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCCh------HHHHHHHhCCChHHHHHHhcCC-C
Q 042204 295 FLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDD------FQTQCIINCGALPYLLVLLIHS-H 366 (559)
Q Consensus 295 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~g~l~~L~~lL~~~-~ 366 (559)
-++...+ ....+...++++.++++++. ..+++..-++.++.|+...+. .....+++.|+++.+-.+.... .
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 8885544 55566677999999999987 457788889999999998541 2334556667766554444322 1
Q ss_pred chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCC---hhHH-HHHHHHHHHHhcCCCHHHHHHHHHcC--C
Q 042204 367 KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAE---INIK-NWAAWAISNATSGGSHEQIKYLVREK--C 440 (559)
Q Consensus 367 ~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~---~~v~-~~a~~aL~nl~~~~~~~~~~~l~~~~--~ 440 (559)
|+++....-. |..... +.++.+ --+..=..-+.++. ..+. .+.-| .++...+-+.+ +
T Consensus 292 DedL~edl~~-L~e~L~---~~~k~l---tsfD~Y~~El~sg~L~WSp~H~se~FW----------~EN~~kf~~~~~~l 354 (429)
T cd00256 292 DEDLTDDLKF-LTEELK---NSVQDL---SSFDEYKSELRSGRLHWSPVHKSEKFW----------RENADRLNEKNYEL 354 (429)
T ss_pred cHHHHHHHHH-HHHHHH---HHHHHc---CCHHHHHHHHhcCCccCCCCCCCchHH----------HHHHHHHHhcchHH
Confidence 4444333221 111111 000000 00000011111110 0000 00111 23444444433 4
Q ss_pred hHHHHhcC-CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 042204 441 IKPLCDLL-PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE 519 (559)
Q Consensus 441 l~~L~~lL-~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~ 519 (559)
+..|+++| ++.|+.+...|+.-++.+++.-+. -+..+++.|+-+.+.+|+.|+|++|+..|...++
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 78889998 467899999999999998876443 3667889999999999999999999999999998
Q ss_pred hhc
Q 042204 520 TYW 522 (559)
Q Consensus 520 ~~f 522 (559)
++.
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 764
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.33 E-value=7e-09 Score=111.64 Aligned_cols=294 Identities=14% Similarity=0.080 Sum_probs=209.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+..+.+.|++.+...+..+++.+..+.... .+.. .+++.+++++.+++ ..++.-..-.|.+++...++..-
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence 4567788888988888888888776665443 2222 25677888998888 89999999999999886665432
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
. ++..|.+=+.++++.+|-.|+++|++|... ..-+. .+.++.+.+ .+.++-+++.|+.++..+.+..
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2 467888889999999999999999998432 21111 245566666 6788999999999999998765
Q ss_pred CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204 260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 339 (559)
|. .....+.++.|..+|.+.|+.|+.+|+.+|..+....+.... ...+.+..|+..+..-++-.+...+.+|....
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 42 223356788899999999999999999999999865554332 23455777888887766666777777775543
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW 418 (559)
Q Consensus 340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~ 418 (559)
..++... ..++..+...|++. ++.|.-+|+.++.++... +++.+..+... +.+.|+.+ .++++++|-.++.
T Consensus 248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L-~ss~~eiqyvaLr 319 (746)
T PTZ00429 248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTL-SRRDAETQYIVCK 319 (746)
T ss_pred CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHh-hCCCccHHHHHHH
Confidence 3222222 14677888889998 999999999999998753 34444433321 34556655 3456778877777
Q ss_pred HHHHHhcC
Q 042204 419 AISNATSG 426 (559)
Q Consensus 419 aL~nl~~~ 426 (559)
.|.-++..
T Consensus 320 ~I~~i~~~ 327 (746)
T PTZ00429 320 NIHALLVI 327 (746)
T ss_pred HHHHHHHH
Confidence 77666553
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.28 E-value=7.8e-09 Score=103.49 Aligned_cols=344 Identities=13% Similarity=0.107 Sum_probs=227.3
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhc-----CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 042204 100 IFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-----GVVPRFVEFLMREDYPQLQYEAAWALTNIASK 173 (559)
Q Consensus 100 ~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-----g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~ 173 (559)
....++..+. ....+.....+..+..++... +.....+.+. .....++.+|.+++ .-++..|+.+|+.+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 4455666665 345677777888888887763 3334444443 46677888998887 79999999999999875
Q ss_pred CchhHHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHH
Q 042204 174 TSEDTKVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWT 251 (559)
Q Consensus 174 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~ 251 (559)
.+.........-.++.|...+.++ +...+..|+.+|..+... +.+|..+.+.+++++|+.+|.... +.+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 443222111111334555566553 477788889999998766 457888888889999999996544 67889999999
Q ss_pred HHHhhcCCCCCcHhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCC------hhHHHHHHHhCcHHHHHHhhCC--
Q 042204 252 LSNFCRGMPRPIFEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGK------NDKIQAVIEAGVCPRLVELLGH-- 322 (559)
Q Consensus 252 L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~------~~~~~~~~~~g~l~~L~~lL~~-- 322 (559)
++-|+...+........+++|.++.+++. ..+.+..-++.++.|+...+ ......+++.|+.+.+-.+...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99998876433333346899999999975 46889999999999999643 1233456777776655444433
Q ss_pred CCCcchhhHHHHHHHhhcCC-------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 042204 323 RSSSVLSPALQTIGHIVAGD-------DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA 395 (559)
Q Consensus 323 ~~~~v~~~al~~L~nl~~~~-------~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~ 395 (559)
.++++ ...+..|....... ++.... +..|-+.+ +|.-+.+..| .++...+-+.
T Consensus 291 ~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~E-l~sg~L~W---------Sp~H~se~FW---------~EN~~kf~~~ 350 (429)
T cd00256 291 DDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSE-LRSGRLHW---------SPVHKSEKFW---------RENADRLNEK 350 (429)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHH-HhcCCccC---------CCCCCCchHH---------HHHHHHHHhc
Confidence 23332 22333333222211 111111 11222211 1111223333 1233333333
Q ss_pred C--CHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 396 G--LIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 396 ~--~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
+ ++..|+++|. +.|+.+..-||.=|+.++.. -|+....+-+.|+=..+++++.++|++|+..|+.++..++
T Consensus 351 ~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~-~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 351 NYELLKILIHLLETSVDPIILAVACHDIGEYVRH-YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHH-CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2 5788999995 55788889999999999987 3566666667888899999999999999999999999886
No 44
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.3e-09 Score=106.82 Aligned_cols=361 Identities=14% Similarity=0.160 Sum_probs=241.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+|.+-+.++++|+..+..|+-++..++.+. .+....-+-.+++|.++.++.++. -.++..++|+|+.|+.+.++...
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence 4566666899999999999999999988764 444444455678999999999777 78999999999999998775442
Q ss_pred HH-HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-----hhhhhccCCHHHHHHHhch------hhhHhHHHH
Q 042204 180 VV-IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-----RDLVLSEEALIPLLAQLNE------HAKLSMLRT 247 (559)
Q Consensus 180 ~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----r~~i~~~g~l~~Ll~ll~~------~~~~~~~~~ 247 (559)
.. ...+.++.++.-|. ..|.+...++|++.+++...++. +..... ...+.++.-|.. ..+..++..
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence 22 22344555555544 45789999999999998432211 000111 244555554432 245678888
Q ss_pred HHHHHHHhhcCCCCCcHhhHhchHHHHHH---------hhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204 248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQ---------LVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCP 314 (559)
Q Consensus 248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~---------lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 314 (559)
+..+|..+....+......+.+....+.. .+...| .+++...|.+|..+.......+..+.+ .++.
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 99999999998876666666555555444 222222 356677777777776444333333333 3677
Q ss_pred HHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204 315 RLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393 (559)
Q Consensus 315 ~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li 393 (559)
.+++++.+ .+..+.+.|+.+++.++..-..+....+. .+.|.|..-|++..+..|...|...++.++..-.+.+..+.
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~ 678 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC 678 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 78888887 45668889999999988755544333333 57888888886554888999999999999875455555555
Q ss_pred HcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC----CCCC-------hHHHHHHH
Q 042204 394 DAGLIGPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL----PCAN-------PTIVTVCL 460 (559)
Q Consensus 394 ~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL----~~~d-------~~v~~~~l 460 (559)
+. ++..|++.|+++ +..++-.++.+++.++..-..+...|+-. +++.|.+.- ...| .++++.++
T Consensus 679 d~-~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l 755 (859)
T KOG1241|consen 679 DE-LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--VMPLLQQASSVQTDPADDSMVDYVDELREGIL 755 (859)
T ss_pred HH-HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence 53 888999999887 67888889999998887545555555332 233222222 1111 25677777
Q ss_pred HHHHHHHHh
Q 042204 461 KGLENILKV 469 (559)
Q Consensus 461 ~~l~~il~~ 469 (559)
++..-|+..
T Consensus 756 eay~gi~qg 764 (859)
T KOG1241|consen 756 EAYTGIIQG 764 (859)
T ss_pred HHHHHHHHH
Confidence 777666643
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.7e-09 Score=108.12 Aligned_cols=343 Identities=17% Similarity=0.175 Sum_probs=245.2
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
..+|.|+..|+. .+.+++..|++++..|... -++....+++.++||.|++-|..-.+-++.++++.+|-.|+.. .
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev-lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEV-LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---H 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhh-ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---c
Confidence 357888988885 4689999999999997554 2666888899999999998887766689999999999999984 3
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~ 256 (559)
-.++.++|++...+.+|.--+..+++.|+.+..|+|..-+ +--+.+.+ +++.|..+| +..+.+..++++-++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence 4678899999999999988888999999999999995322 22234444 577777777 7778888999999999998
Q ss_pred cCC-CCCcH---hhHhchHHHHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC---
Q 042204 257 RGM-PRPIF---EQVRPALPVLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS--- 325 (559)
Q Consensus 257 ~~~-~~~~~---~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~--- 325 (559)
.+. +.+.. ..-.+++....+|+...+ ..+..-.+..++-++.+.+.....+...++...|..+|.+.+.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 776 32222 222677777788876543 3445667777888888877777778888888888877754211
Q ss_pred -c-----chhh------H---------------------------------------------------HHHHHHh----
Q 042204 326 -S-----VLSP------A---------------------------------------------------LQTIGHI---- 338 (559)
Q Consensus 326 -~-----v~~~------a---------------------------------------------------l~~L~nl---- 338 (559)
. .+.+ . .+++..+
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 0 0100 0 0111100
Q ss_pred ---------hcCC---------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHH-cCCH
Q 042204 339 ---------VAGD---------DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVID-AGLI 398 (559)
Q Consensus 339 ---------~~~~---------~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~-~~~i 398 (559)
-.++ ++..+.++. .++|.|+++..+.-++.||..+..+|..+.. .+.+.++.++. .++-
T Consensus 524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS 602 (1051)
T KOG0168|consen 524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS 602 (1051)
T ss_pred ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence 0000 011111111 4688888888776689999999999999886 67888888885 4566
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449 (559)
Q Consensus 399 ~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 449 (559)
..+-.+|.+.|..+..-|+...--+...-..-....+...|++..+-+|..
T Consensus 603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 677778888888877777766666665544455677788888887777765
No 46
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.14 E-value=1.3e-08 Score=103.94 Aligned_cols=386 Identities=13% Similarity=0.146 Sum_probs=238.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCC-ch
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQYEAAWALTNIASKT-SE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~-~~ 176 (559)
..+.+++.-++++.+..+...+....++.+.-...-+++-.+.-.+..++..++.++. ..+......++.|-..+. ..
T Consensus 716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kp 795 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKP 795 (1172)
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcccc
Confidence 3566777778888877777777777777665333333333333445555555554431 233334444443332210 11
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh--hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD--LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~--~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
.. ..++...+..|+++++.+|++|+..++.++..-..+.+ .+...|+ .|...| ....++++-..+.++..
T Consensus 796 yl-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAika 867 (1172)
T KOG0213|consen 796 YL-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKA 867 (1172)
T ss_pred ch-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHH
Confidence 11 12456677889999999999999999999733222211 1112221 233344 45677888877777776
Q ss_pred hhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204 255 FCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ 333 (559)
Q Consensus 255 L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 333 (559)
++... -.....-+.+++|.|..+|++....|+++++..++.+++..++.+..---..++--|+++|+..+..+|..|..
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~n 947 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVN 947 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66543 12223345789999999999999999999999999999887765433222345666788888888899999999
Q ss_pred HHHHhhcC--ChHHHHHHH----------------------h-C---CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204 334 TIGHIVAG--DDFQTQCII----------------------N-C---GALPYLLVLLIHSHKKSIKNHACWTISKITAGN 385 (559)
Q Consensus 334 ~L~nl~~~--~~~~~~~~~----------------------~-~---g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 385 (559)
++|.|+.. ..+....++ + + .++|.|+.=...+ ...|+.-.+.+++.+....
T Consensus 948 TfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen 948 TFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred hhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHH
Confidence 99998853 222111111 1 1 2345555545566 7788888888888776532
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC-------CCCChHHHHH
Q 042204 386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL-------PCANPTIVTV 458 (559)
Q Consensus 386 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-------~~~d~~v~~~ 458 (559)
.+.-...+- .+.|.|-+.|.+.|..-+..|+.++.+++.+.. -.|+.+.++.|| -...|.++..
T Consensus 1027 gemskdYiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1027 GEMSKDYIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred HHHhhhHHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHH
Confidence 222222222 268888888988999999999999999998631 234444444444 3466788777
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
..+++..+-.. +--.-.+..+..=..|+...|++..-.+.+..+
T Consensus 1098 ~~e~~eg~r~~--------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1098 FDEAMEGLRVA--------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred HHHHHHHHHHH--------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence 77776664321 111111233334457898899887777666543
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.2e-09 Score=108.94 Aligned_cols=367 Identities=16% Similarity=0.206 Sum_probs=230.7
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCch
Q 042204 99 EIFAAMVAGVWSDDNN-LQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~-~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
+.++.++.....+.+. .+..++.++..+ |.+-.+..-.-....++..++.-... ..+..+|..|+.+|.|-......
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyi-ce~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYI-CEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHH-HccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3566677777766655 677788888886 44323331111223456666665543 23368999999999986653221
Q ss_pred hHHH-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204 177 DTKV-VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 177 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL 255 (559)
+-.. .-..=++...+..-++++.+++..|..||..|..-..++-........+..-+..+ .+++.++.-.++...+++
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTI 286 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence 2111 11123456677778889999999999999999754332212222222233334445 466778888888888888
Q ss_pred hcCCC-------------CC--cHh----hHhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204 256 CRGMP-------------RP--IFE----QVRPALPVLAQLVHS-------NDKEVLTDACWALYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 256 ~~~~~-------------~~--~~~----~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 309 (559)
|.... .+ ... ....++|.|+++|.. ++...-..|-.||.-++....+. ++.
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~ 363 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP 363 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh
Confidence 85331 11 111 125788888888853 23445566666666555333322 222
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 389 (559)
-+++.+-+-+++++++-+..|..++|.+..+.+.....-+-.+++|.++.++.++ .-.++..++|+++.++.+.++.+
T Consensus 364 -~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~ 441 (859)
T KOG1241|consen 364 -HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAI 441 (859)
T ss_pred -hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhc
Confidence 3566667778889999999999999999999887666666778999999999977 88999999999999998655433
Q ss_pred HHH-HHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHH----HHH---cCChHHHHhcCCC---CChHHHHH
Q 042204 390 QAV-IDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKY----LVR---EKCIKPLCDLLPC---ANPTIVTV 458 (559)
Q Consensus 390 ~~l-i~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----l~~---~~~l~~L~~lL~~---~d~~v~~~ 458 (559)
..- .....++.++.-|.+ .|.+..+++|++.+++.......... ... ..++..|+..-+. .+..+|..
T Consensus 442 ~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHH
Confidence 221 122345555555554 68999999999999985321000000 000 0123333333333 34578888
Q ss_pred HHHHHHHHHHhhhhh
Q 042204 459 CLKGLENILKVGEAE 473 (559)
Q Consensus 459 ~l~~l~~il~~~~~~ 473 (559)
+.++|..+.+...+.
T Consensus 521 AYeALmElIk~st~~ 535 (859)
T KOG1241|consen 521 AYEALMELIKNSTDD 535 (859)
T ss_pred HHHHHHHHHHcCcHH
Confidence 888888888776553
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.11 E-value=1.3e-08 Score=98.28 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=201.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
+..+..|..+|.-+...+.+.+.++.+.. +....-....=....|...+++..+++-..-|++||..+.. -++.|..+
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~ 194 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAF 194 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhee
Confidence 45677788888888877888888887654 22111100011234455566664447888899999999999 78999999
Q ss_pred HhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 182 IDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
+...++..++..+.+ .+..++-+.+.|++-++...+. .+.+...+.++.|..++..+....+.+.++.++.|++...
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999998843 5678888999999999766544 4666788899999999988889999999999999999876
Q ss_pred CCCc------HhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhcc-------C--------------Ch--------
Q 042204 260 PRPI------FEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLSN-------G--------------KN-------- 301 (559)
Q Consensus 260 ~~~~------~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~-------~--------------~~-------- 301 (559)
+... ..++..-++..++.|. .+|+++..+.-..-..|-. . ++
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 4322 2233444455555553 3566665544332222211 0 11
Q ss_pred -hHHHHHHHh--CcHHHHHHhhCCCC-CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 042204 302 -DKIQAVIEA--GVCPRLVELLGHRS-SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT 377 (559)
Q Consensus 302 -~~~~~~~~~--g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~ 377 (559)
++...+.+. .++..|+.+|..++ +.+..-|+.=||..+...++....+.+.|+=+.++.+|+++ +++||.+|..+
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALla 432 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLA 432 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHH
Confidence 112223332 47889999998865 78888999999999999999888888999999999999999 99999999998
Q ss_pred HHHhhc
Q 042204 378 ISKITA 383 (559)
Q Consensus 378 L~nl~~ 383 (559)
+-.+..
T Consensus 433 vQ~lm~ 438 (442)
T KOG2759|consen 433 VQKLMV 438 (442)
T ss_pred HHHHHh
Confidence 876643
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-08 Score=97.54 Aligned_cols=186 Identities=22% Similarity=0.208 Sum_probs=155.1
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP 188 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~ 188 (559)
.+.+.+.+..|+..|..++.. -++...++..|+++.++..+++++ +.+|..|+|+|+.++..+|.....+++.|+++
T Consensus 93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 466789999999999998654 788899999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204 189 IFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPRPIFEQ 266 (559)
Q Consensus 189 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~ 266 (559)
.|+..|.+ .+..++..|+.|++++....+...+.+...+++..|...+... .+..+++.++..+..+...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999986 5567789999999999999888888888888899999999543 678888999999999998774333333
Q ss_pred H-hchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 267 V-RPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 267 ~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
. .+....+..+..+.+.++...++.++..+.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 3 344445556666778888888877776655
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.7e-08 Score=94.97 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=159.5
Q ss_pred cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL 359 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~ 359 (559)
+.+.+-+..|+.-|.++++.-+ ....++..|++..++..+.+++..+|..|+++||.++.+++.....+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4567788889999999885444 556789999999999999999999999999999999999999889999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 360 VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVR 437 (559)
Q Consensus 360 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 437 (559)
.++.+..+..+|..|.++++.+....+.....+...++...|.+.|++ .+..++..|+..+..++... ......+..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHH
Confidence 999877577888999999999999989989999998899999999998 57788899999999998853 333344455
Q ss_pred cCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
.+....+..+...-+.++...++.++...+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 67777777777888888888888887776644
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.6e-07 Score=93.56 Aligned_cols=219 Identities=17% Similarity=0.202 Sum_probs=165.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.-+.++..|.+.-+-++..|.-.+-++.-.- ++... ..+|.|++-|.++| |.++..|..+++.+|..+|.+.-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence 4577888999999999999998888865432 23222 36899999999999 99999999999999998887654
Q ss_pred HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH--Hhh
Q 042204 180 VVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS--NFC 256 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~--nL~ 256 (559)
. .-|.+.++|-+ .+.=+....+..+++++--.|..... .+++|.+++....-.++...++.++. +++
T Consensus 218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 3 44778888764 34444556788888888777766555 47899999965555556655555543 334
Q ss_pred cCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204 257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336 (559)
Q Consensus 257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 336 (559)
.+. ......+.-+++.|-.++.++|+.++.-+|-+++.+....+..++.. -+.++.+|.+.++.+|..|+..+.
T Consensus 288 ~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence 332 23445567788889899999999999999999999997777555443 367889999999999999999999
Q ss_pred HhhcC
Q 042204 337 HIVAG 341 (559)
Q Consensus 337 nl~~~ 341 (559)
-++..
T Consensus 362 gmVsk 366 (877)
T KOG1059|consen 362 GMVSK 366 (877)
T ss_pred HHhhh
Confidence 88864
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=8.9e-07 Score=91.63 Aligned_cols=323 Identities=17% Similarity=0.192 Sum_probs=236.3
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCc-
Q 042204 99 EIFAAMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASKTS- 175 (559)
Q Consensus 99 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~- 175 (559)
+.++.|+..+.+.. .+.+..|+..|..+ + ...+..+.. -+++.|++.|+.+ .++++...++..+.++.+.++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~-s---rkYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAF-S---RKYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHH-H---HHHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57899999887654 68899999999886 3 234555554 4668888888754 348999999999999988542
Q ss_pred -----hhH----------HHH-HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-chhhhhhhcc-CCHHHHHHHhc
Q 042204 176 -----EDT----------KVV-IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS-PRCRDLVLSE-EALIPLLAQLN 237 (559)
Q Consensus 176 -----~~~----------~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~-g~l~~Ll~ll~ 237 (559)
+.+ +.+ -..+.|..|+.++...+-.||..++..|.++.... ++.++.++.. -++..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 111 222 33578899999999999999999999999987554 4567766644 4688999999
Q ss_pred hhhhHhHHHHHHHHHHHhhcCCCCCcH-hhHhchHHHHHHhhccC---C-HhHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 042204 238 EHAKLSMLRTATWTLSNFCRGMPRPIF-EQVRPALPVLAQLVHSN---D-KEVLTDACWALYFLSNGKNDKIQAVIEAGV 312 (559)
Q Consensus 238 ~~~~~~~~~~a~~~L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~---d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 312 (559)
.+....++-.++..|..+.++.+.... .....++..|..++... | .-|..+|+..|.||...+....+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 666777888899999999998855443 44578899999998643 3 357899999999999888888888999999
Q ss_pred HHHHHHhhCCC---CC-----c-----chhhHHHHHHHhhcCC-h----HHH-HHHHhCCChHHHHHHhcCC-CchhHHH
Q 042204 313 CPRLVELLGHR---SS-----S-----VLSPALQTIGHIVAGD-D----FQT-QCIINCGALPYLLVLLIHS-HKKSIKN 372 (559)
Q Consensus 313 l~~L~~lL~~~---~~-----~-----v~~~al~~L~nl~~~~-~----~~~-~~~~~~g~l~~L~~lL~~~-~~~~v~~ 372 (559)
+|+|..+|... +. . -...++.++..++.-. . .+. ..+..++++..|..++.++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 99999888642 21 1 1234667777666522 1 223 3456779999999999776 3568999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHcC------CHHH----HHHHhhc-CChhHHHHHHHHHHHHhcCC
Q 042204 373 HACWTISKITAGNREQIQAVIDAG------LIGP----LINLLQN-AEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 373 ~a~~~L~nl~~~~~~~~~~li~~~------~i~~----Li~lL~~-~~~~v~~~a~~aL~nl~~~~ 427 (559)
++..++++..+++......+.+.. -.+. ++.+..+ ..+..|..+.+++..+....
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 999999999998777666665321 1122 2222222 36788999999998887653
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=7.1e-07 Score=92.33 Aligned_cols=325 Identities=13% Similarity=0.163 Sum_probs=237.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCc---
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSP--- 217 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~--- 217 (559)
.|+.|+.-+.+..-++-|..|++.|..++. +.|..+. ..++++|++.|.. .++++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 578888888776667889999999999887 4555554 4678999999876 678999999999999985442
Q ss_pred -----h--------hhh-hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH---hchHHHHHHhhcc
Q 042204 218 -----R--------CRD-LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV---RPALPVLAQLVHS 280 (559)
Q Consensus 218 -----~--------~r~-~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~---~~~l~~L~~lL~~ 280 (559)
. +.+ ++...+.+..++..+ ...|..++..++..++++.+..|......+ +.++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 112 233556677777777 677889999999999999988754433332 6788999999999
Q ss_pred CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC---C-CcchhhHHHHHHHhhcCChHHHHHHHhCCChH
Q 042204 281 NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR---S-SSVLSPALQTIGHIVAGDDFQTQCIINCGALP 356 (559)
Q Consensus 281 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~-~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~ 356 (559)
..+.++..++..|+.++..++...+.+.=.+++.+|..++... + .-|...|+..|.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999977775544555568999999999763 2 34778899999999998887778888999999
Q ss_pred HHHHHhcCCC--c--------hhHH--HHHHHHHHHhhc-CCH----HHH-HHHHHcCCHHHHHHHhhcC--ChhHHHHH
Q 042204 357 YLLVLLIHSH--K--------KSIK--NHACWTISKITA-GNR----EQI-QAVIDAGLIGPLINLLQNA--EINIKNWA 416 (559)
Q Consensus 357 ~L~~lL~~~~--~--------~~v~--~~a~~~L~nl~~-~~~----~~~-~~li~~~~i~~Li~lL~~~--~~~v~~~a 416 (559)
.|..+|.... + ..+. ..|..++..+.. +++ .+. ..+...+++..|+.++.++ ..+++.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885321 1 1121 345666666654 322 223 3455788999999999876 56899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCC----------hHHHHhcCCC-CChHHHHHHHHHHHHHHHhhhhh
Q 042204 417 AWAISNATSGGSHEQIKYLVREKC----------IKPLCDLLPC-ANPTIVTVCLKGLENILKVGEAE 473 (559)
Q Consensus 417 ~~aL~nl~~~~~~~~~~~l~~~~~----------l~~L~~lL~~-~d~~v~~~~l~~l~~il~~~~~~ 473 (559)
..++.++..+ +......+.+-.+ +-.++.+..+ .....+.+++.++..++......
T Consensus 338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999987 4444445554221 2233444444 44588889999999888655443
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.5e-07 Score=96.03 Aligned_cols=341 Identities=17% Similarity=0.171 Sum_probs=237.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
...+.+++.....|.+.+...--.+.+..... |.. . .++++.++.=..+++ |.+|..|++.++.+-- +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~-a---~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDL-A---ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chH-H---HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 46899999999999888888878888876543 221 1 246777777777788 8999999988877665 2222
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
. -+...+...+++.++.+|..++.+..++-..++ +.+...|.++.|-.++ .+.++.+..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 2 356789999999999999999999999865543 5677888899999888 588899999999999999987
Q ss_pred CCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 259 MPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 259 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
.+. .........+..++..+...++.-+...+.++.+-...++...+ .++.++...|.|.+..+...+...+.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 33444456666677777666677777777777766544332222 357889999999999999999999988
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHH-------------------------H
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA-------------------------V 392 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------------------l 392 (559)
....-......+. ..+-+.++.++.+. . .++.-|..-+.-+....++.... +
T Consensus 266 ~~~~~~~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 8876554333333 35667777777766 3 55544444333333222321111 0
Q ss_pred H-HcC---CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 393 I-DAG---LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 393 i-~~~---~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
. +.+ ++..|...-..-|.+..+++++||++++...+.. .++++.|.++++.+-..++..+...+..++.
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 0 111 2222222333457888899999999998853221 5789999999988777777777778888887
Q ss_pred hhhh
Q 042204 469 VGEA 472 (559)
Q Consensus 469 ~~~~ 472 (559)
..++
T Consensus 416 kyP~ 419 (734)
T KOG1061|consen 416 KYPN 419 (734)
T ss_pred cCCC
Confidence 6544
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.99 E-value=1.7e-07 Score=90.69 Aligned_cols=323 Identities=14% Similarity=0.101 Sum_probs=222.3
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHH-------hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVI-------QSGVVPRFVEFLMREDYPQLQYEAAWALTNI 170 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii-------~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl 170 (559)
..+..++..+... .++.....+..+..+++.. ..+..+. ..-.-+.++.+|.+.+ .-+...+.++++.+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 3556667766643 3456667788888888863 3333222 1234677889999988 78888899999999
Q ss_pred hcCCchhHHHHHhCC-CHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh-chhhhHhHHHH
Q 042204 171 ASKTSEDTKVVIDHG-AVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL-NEHAKLSMLRT 247 (559)
Q Consensus 171 ~~~~~~~~~~i~~~g-~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll-~~~~~~~~~~~ 247 (559)
+......... .+-. ....|...+++ .+.+....|+.||..+... +++|..+...+++..++..+ ....+.+++..
T Consensus 142 a~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 142 ACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred HHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 8843322111 0100 12233344444 6777778888999998876 45688888888889999888 55567888999
Q ss_pred HHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCCh------hHHHHHHHhCcHHHHHHhh
Q 042204 248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKN------DKIQAVIEAGVCPRLVELL 320 (559)
Q Consensus 248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~------~~~~~~~~~g~l~~L~~lL 320 (559)
.+.+++-|+.+.+........+.++.|..++++. .+.|..-++.++.|+.+..+ +....++..++.+.+-.+.
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999988764444444568899999999754 68899999999999997764 3334456656655554444
Q ss_pred CC--CCCcchhhHHH-------HHHHhhcCChH-----------------------HHHHHHh--CCChHHHHHHhcCCC
Q 042204 321 GH--RSSSVLSPALQ-------TIGHIVAGDDF-----------------------QTQCIIN--CGALPYLLVLLIHSH 366 (559)
Q Consensus 321 ~~--~~~~v~~~al~-------~L~nl~~~~~~-----------------------~~~~~~~--~g~l~~L~~lL~~~~ 366 (559)
.. +++.+....-. -.-.+++.+.. ..+.+.+ ..++..|+.+|+...
T Consensus 300 ~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~ 379 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN 379 (442)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence 33 23332221111 11112221111 0111111 246889999998875
Q ss_pred chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 367 KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 367 ~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+|.+-.-||.=|+......|+....+.+.|+=+.+++++.++|++|+.+|+.|+..+..+
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 788999999999999999999988888999999999999999999999999999887653
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.95 E-value=4.5e-08 Score=96.64 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=161.7
Q ss_pred HHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCCCcHhhHh-------chHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 229 LIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPRPIFEQVR-------PALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 229 l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~-------~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
...++++|... .+.++.+.++..+..++...+........ .....++.++..+|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566777666 78899999999999999988654433321 24566777888999999999999999998766
Q ss_pred hhHHHHHHHhCcHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh------cCCCchhH
Q 042204 301 NDKIQAVIEAGVCPRLVELLGH----RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL------IHSHKKSI 370 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL------~~~~~~~v 370 (559)
+....... .++++.++..+.+ ++..++..|+++++++.. .+..+..+.+.++++.+..+| .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 65433322 4566777766654 445677889999999986 455667788899999999999 44436788
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204 371 KNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449 (559)
Q Consensus 371 ~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 449 (559)
+.+++.++.-++ .+++.+..+.+.++++.|+++++.. ..++.+-++.++.|++..........++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 899999998885 5688888999889999999999865 67899999999999999876668888888888887777764
Q ss_pred --CCChHHHHH
Q 042204 450 --CANPTIVTV 458 (559)
Q Consensus 450 --~~d~~v~~~ 458 (559)
..|+++..-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 467876554
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.90 E-value=4.5e-08 Score=96.63 Aligned_cols=228 Identities=20% Similarity=0.239 Sum_probs=158.6
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHHhCCCchhhhhhhc------cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 187 VPIFVKLLA--SPNDDIREQAVWALGNVAGDSPRCRDLVLS------EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 187 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
...++.+|+ ++++++.+.++..+..+..+.+...+.+.. ...+.++++++ ..+|..+...++..++.+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 444555554 468999999999999999888876555544 22678889876 566889999999999999988
Q ss_pred CCCCcHhhHhchHHHHHHhhc----cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-----CC--CCCcc
Q 042204 259 MPRPIFEQVRPALPVLAQLVH----SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-----GH--RSSSV 327 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-----~~--~~~~v 327 (559)
.+........+.++.++..+. +++.+++..++.++.++.. .+.....+.+.+.++.+..++ .+ ....+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 766555544566666666665 4566778999999999984 455667888899999999999 22 23567
Q ss_pred hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHcCCHHHHHHHhh
Q 042204 328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVIDAGLIGPLINLLQ 406 (559)
Q Consensus 328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~~~i~~Li~lL~ 406 (559)
+..++.+++.++. +++....+.+.++++.|..+++....++|-+-+..++.|+....++ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 7889999998887 4556677888889999999998766889999999999999975443 6777888877776666654
Q ss_pred c--CChhHHHHHH
Q 042204 407 N--AEINIKNWAA 417 (559)
Q Consensus 407 ~--~~~~v~~~a~ 417 (559)
. +|+++....-
T Consensus 294 rk~~Dedl~edl~ 306 (312)
T PF03224_consen 294 RKWSDEDLTEDLE 306 (312)
T ss_dssp S--SSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3 3777665443
No 58
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.7e-06 Score=86.53 Aligned_cols=357 Identities=12% Similarity=0.113 Sum_probs=221.1
Q ss_pred HHHHHHHHHhcC-------CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 042204 99 EIFAAMVAGVWS-------DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIA 171 (559)
Q Consensus 99 ~~l~~lv~~L~s-------~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~ 171 (559)
..+|.+++.|.. +|+..-..|..+|.-+.... -+.+++. ++..+-+-+++++ ..-++.|+.+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 478999998864 34566666666665543221 1222221 3444445567777 588999999999999
Q ss_pred cCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch--hhhHhHHHHHH
Q 042204 172 SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE--HAKLSMLRTAT 249 (559)
Q Consensus 172 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~--~~~~~~~~~a~ 249 (559)
.+..+....-+-..++|.+...+.++..-+++.++||++.|+.+-+ ..+-..|.+.+.+..... ...+....+++
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 8755554444445789999999998888999999999999986533 233344545544443321 23456778899
Q ss_pred HHHHHhhcCCCCCc---HhhHhchHHHHHHhh------ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204 250 WTLSNFCRGMPRPI---FEQVRPALPVLAQLV------HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL 320 (559)
Q Consensus 250 ~~L~nL~~~~~~~~---~~~~~~~l~~L~~lL------~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 320 (559)
|+.-||...-+... ...+....+.++.-| ..++...+..+..+|+.+....++....++ .|+.......|
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence 99999987663222 112223333333222 134567788888888888765554433222 12322222222
Q ss_pred -----------CCCC----CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204 321 -----------GHRS----SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN 385 (559)
Q Consensus 321 -----------~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 385 (559)
...+ .+++..-+..|..+.......++.+- ..++..++.+|.+.....+-.....++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 2222 23444555555555543322111111 1356678888887723345567788999997654
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC--ChHHHHHHHHHH
Q 042204 386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA--NPTIVTVCLKGL 463 (559)
Q Consensus 386 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~~l~~l 463 (559)
.+....... .++|.|.+.|...|..+...|+..++.++..-..+...+ .......|+++|.++ +.++...++.++
T Consensus 630 ~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvF 706 (858)
T COG5215 630 EERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVF 706 (858)
T ss_pred HHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHH
Confidence 555555444 399999999988899999999999999987544343333 334678888998775 457778888888
Q ss_pred HHHHHh
Q 042204 464 ENILKV 469 (559)
Q Consensus 464 ~~il~~ 469 (559)
..|.-.
T Consensus 707 gDIAla 712 (858)
T COG5215 707 GDIALA 712 (858)
T ss_pred HHHHHH
Confidence 877644
No 59
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=9.4e-06 Score=82.82 Aligned_cols=354 Identities=16% Similarity=0.099 Sum_probs=223.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
|-.-+.|++...+...++...+...++.. -.+....-..++..+++-++.+. +.+|...+.||.-+... .+....
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~v~~~~~a~~--~~~~d~~~~~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~-~~~~~~- 132 (569)
T KOG1242|consen 58 PCFEQRLNSLHNDNLRNNVVVLEGTLAFH--LQIVDPRPISIIEILLEELDTPS-KSVQRAVSTCLPPLVVL-SKGLSG- 132 (569)
T ss_pred HHHHHHhccchhHHHhhhhHHHHHHHHHh--ccccCcchhHHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHH-hhccCH-
Confidence 33444555544444444444444433331 11111111236778888888888 89999999998877652 221111
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
.-+.+.+.+++......-+..+.+.++.+...... ..+.+.+++..+...+....+..-++.+..++-..+..-..
T Consensus 133 --~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 133 --EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred --HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 12567788888888888889999999998766433 34456677777777774333333333344444433333323
Q ss_pred CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204 262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 262 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 341 (559)
.....+...+|.++.-+.+....++..+..+..-+...-+...-. -+++.++.-+....++....++..++.++..
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 333344566777777777788888888777766655332221111 1345555444445888899999999999998
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHH-------------------------
Q 042204 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVID------------------------- 394 (559)
Q Consensus 342 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~------------------------- 394 (559)
.+.+.... ...++|.+.+.|.+. .+++|+.+..++..++. .+++ ++.++.
T Consensus 285 ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 285 APKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred chHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 88776543 448999999999999 99999999999999876 3333 443221
Q ss_pred -----cC----CHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHH
Q 042204 395 -----AG----LIGPLINLLQNAEINIKNWAAWAISNATSGG-SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE 464 (559)
Q Consensus 395 -----~~----~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~ 464 (559)
.- ++|.|.+-+...+..+++.++.++.|++.-- ++.....++. .+++.|-..+....|+++..+..+|.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 11 2333333334456778899999999998753 3443333222 26777777777789999999999998
Q ss_pred HHHHhhhh
Q 042204 465 NILKVGEA 472 (559)
Q Consensus 465 ~il~~~~~ 472 (559)
.+++....
T Consensus 441 ~l~e~~g~ 448 (569)
T KOG1242|consen 441 ALLERLGE 448 (569)
T ss_pred HHHHHHHh
Confidence 88876443
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.83 E-value=1.6e-07 Score=94.42 Aligned_cols=308 Identities=15% Similarity=0.161 Sum_probs=191.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh--hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCC
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR--DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRP 262 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~ 262 (559)
++...+.+|+++.+.+|++|+...+.++..-..|- ..+...|. .|..-| ....++++-..+.+++.+.... -..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 56778889999999999999999998863211111 11111121 122233 3456777777666666665433 122
Q ss_pred cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-
Q 042204 263 IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG- 341 (559)
Q Consensus 263 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~- 341 (559)
.+.-+.+++|.|..+|++....+..+.+..++.++...++.+..---..++--|+..|++.+.++|..|..++|.|+..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 2234578999999999999999999999999999988776543322234556678888888889999999999988763
Q ss_pred -ChHHHHHHH----------------------h-CC---ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHH
Q 042204 342 -DDFQTQCII----------------------N-CG---ALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVI 393 (559)
Q Consensus 342 -~~~~~~~~~----------------------~-~g---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li 393 (559)
..+....++ + +| ++|.|+.=...+ ...|+.....+++.+.....+ ...++.
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy 840 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVY 840 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 1 13 344444444455 677887777777766542122 122222
Q ss_pred HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH-HHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ-IKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 394 ~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
.+.|.|-+.|.+.|+.-+..|...|.+++.++.... ...++ .++..|..-+-.+.|.++....+++..+...-
T Consensus 841 --~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllwpNIle~sPhvi~~~~Eg~e~~~~~l-- 914 (975)
T COG5181 841 --SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLWPNILEPSPHVIQSFDEGMESFATVL-- 914 (975)
T ss_pred --HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhhhhccCCCcHHHHHHHHHHHHHHHHh--
Confidence 267888888888999999999999999987642110 01111 12233333335677888888887777655321
Q ss_pred hcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 473 EKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
+...+ +..+..=..|+...|+++.-...+..
T Consensus 915 ---------g~g~~---------m~Yv~qGLFHPs~~VRk~ywtvyn~m 945 (975)
T COG5181 915 ---------GSGAM---------MKYVQQGLFHPSSTVRKRYWTVYNIM 945 (975)
T ss_pred ---------ccHHH---------HHHHHHhccCchHHHHHHHHHHHhhh
Confidence 11111 23344446799999988765555543
No 61
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.1e-05 Score=85.78 Aligned_cols=328 Identities=15% Similarity=0.161 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHH-----hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHH
Q 042204 115 LQLEATTKFRKLLSIERSPPIEEVI-----QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPI 189 (559)
Q Consensus 115 ~~~~a~~~l~~lls~~~~~~~~~ii-----~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~ 189 (559)
-...++.+|+++++. +|....+. --|.++-+...|.....+.++..|+.++..+.. +.++...+++.|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 456789999999887 44333332 236778888888776558999999999887777 8999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC---CCCcHhh
Q 042204 190 FVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM---PRPIFEQ 266 (559)
Q Consensus 190 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~---~~~~~~~ 266 (559)
|+.+|.+. +..|+.++..|..++.. ++......+.|++..++.++..++..+.+..+...+..|...+ |...+..
T Consensus 1818 LL~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 99999764 57888899999998765 4445566788999999999988888899999999999998776 3333322
Q ss_pred HhchHH-----------HHHHhhc--cCCHhH------HHHHHHHHHHhcc--------CC------hhHH---------
Q 042204 267 VRPALP-----------VLAQLVH--SNDKEV------LTDACWALYFLSN--------GK------NDKI--------- 304 (559)
Q Consensus 267 ~~~~l~-----------~L~~lL~--~~d~~v------~~~a~~~L~~l~~--------~~------~~~~--------- 304 (559)
+..+-. ..++.+. +.+|++ +...-..+..+.. ++ +++.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 222222 2233332 122222 1111112222210 00 0000
Q ss_pred --------HHH-------------HHhCcHHHHHHhhCCCCCcc--hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204 305 --------QAV-------------IEAGVCPRLVELLGHRSSSV--LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361 (559)
Q Consensus 305 --------~~~-------------~~~g~l~~L~~lL~~~~~~v--~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l 361 (559)
+.+ .-.++++.+.++|..+.+.- ....-.++..+....+...+.+-..|-+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 001 11235666677776654432 2223334445555666666777778999999999
Q ss_pred hcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 042204 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCI 441 (559)
Q Consensus 362 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 441 (559)
+.+. +..+-+.|.++|..++. +.-....+.....+..+++.++.. .....-|+.+|..+......+.+....+.|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9877 66777889999998865 345556666655666677777653 45556889999999887677788888899999
Q ss_pred HHHHhcCCC
Q 042204 442 KPLCDLLPC 450 (559)
Q Consensus 442 ~~L~~lL~~ 450 (559)
+.|..+|+.
T Consensus 2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhcc
Confidence 999999965
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.9e-06 Score=89.67 Aligned_cols=257 Identities=15% Similarity=0.140 Sum_probs=156.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
....+.+-|++.+.-++-.|+..|.++.+. +.+.. +.|-+.++|++.+ |-+|..|+.|...+....|+...
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHH
Confidence 445667778888888888999999997653 33332 5688888898888 89999999999988887766554
Q ss_pred HHHh----------CCC----HHHHHHhhCCC------CHHHHHHHHHHHHHHhCCC--chhhhhhhccCCHH-------
Q 042204 180 VVID----------HGA----VPIFVKLLASP------NDDIREQAVWALGNVAGDS--PRCRDLVLSEEALI------- 230 (559)
Q Consensus 180 ~i~~----------~g~----i~~L~~lL~~~------~~~v~~~a~~~L~nl~~~~--~~~r~~i~~~g~l~------- 230 (559)
.++. +|+ +..+..+.+.. ..++...-+..|-++.... |++- -.|+-.
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd----v~gi~dPFLQi~i 254 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD----VHGISDPFLQIRI 254 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC----ccCCCchHHHHHH
Confidence 4332 233 33344443331 1234445566666665322 2210 112212
Q ss_pred -HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC---cHhhH-----------------hchHHHHHHhhccCCHhHHHHH
Q 042204 231 -PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP---IFEQV-----------------RPALPVLAQLVHSNDKEVLTDA 289 (559)
Q Consensus 231 -~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~-----------------~~~l~~L~~lL~~~d~~v~~~a 289 (559)
.++++| ...+.+.-....-.|..++++.... -.... .-++..|-++|.+.|..++.-+
T Consensus 255 LrlLriL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 255 LRLLRIL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHHHh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee
Confidence 223334 2334444455555556655543111 01111 2234455556666666666666
Q ss_pred HHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 042204 290 CWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS 369 (559)
Q Consensus 290 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~ 369 (559)
+..|.++...++...+.-. ..++++|++++..++..|+..+..|+..+.. . ..+..|+..|.+. ++.
T Consensus 334 Ln~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~Nv--~-----~mv~eLl~fL~~~-d~~ 400 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESNV--R-----VMVKELLEFLESS-DED 400 (866)
T ss_pred hhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhccccH--H-----HHHHHHHHHHHhc-cHH
Confidence 6666666655554333221 4578899999999999999999888865432 2 2356788888888 888
Q ss_pred HHHHHHHHHHHhhc
Q 042204 370 IKNHACWTISKITA 383 (559)
Q Consensus 370 v~~~a~~~L~nl~~ 383 (559)
.|...+.-+..++.
T Consensus 401 ~k~~~as~I~~laE 414 (866)
T KOG1062|consen 401 FKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888887775
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.1e-05 Score=84.20 Aligned_cols=379 Identities=16% Similarity=0.090 Sum_probs=220.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
|.++ -++.+.|++.-.+.-+.-...-++- ++.+..-. +...+.+=|++++ .-++-.|+-+|++|++ +|..
T Consensus 71 Gqie-clKLias~~f~dKRiGYLaamLlLd-E~qdvllL-----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Ema 140 (866)
T KOG1062|consen 71 GQIE-CLKLIASDNFLDKRIGYLAAMLLLD-ERQDLLLL-----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMA 140 (866)
T ss_pred hhhH-HHHHhcCCCchHHHHHHHHHHHHhc-cchHHHHH-----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHh
Confidence 4443 3456777776555555444433332 32333222 3455666677777 6888999999999997 5655
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh--------h--ccC----CHHHHHHHhchhh----
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV--------L--SEE----ALIPLLAQLNEHA---- 240 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i--------~--~~g----~l~~Ll~ll~~~~---- 240 (559)
..+ .|-+.+++++.++.+|..|+.|...+....|+.-+.+ . ..| ++..+..++..+.
T Consensus 141 rdl-----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 141 RDL-----APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HHh-----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 544 5778889999999999999999999987777643332 2 223 3444455543221
Q ss_pred -hHhHHHHHHHHHHHhhcCC--CCCcHhhH-hchHH----HHHHhhccCCHhHHHHHHHHHHHhccCChhHH---HH-HH
Q 042204 241 -KLSMLRTATWTLSNFCRGM--PRPIFEQV-RPALP----VLAQLVHSNDKEVLTDACWALYFLSNGKNDKI---QA-VI 308 (559)
Q Consensus 241 -~~~~~~~a~~~L~nL~~~~--~~~~~~~~-~~~l~----~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~---~~-~~ 308 (559)
-.++....+..|.++.... |.-....+ .+.++ .++.+|..+|++....-...|..++...+... .+ +.
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY 295 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY 295 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 1236666778888888766 22222111 23333 24556677787777777777777775433211 11 11
Q ss_pred Hh---------------CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 042204 309 EA---------------GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNH 373 (559)
Q Consensus 309 ~~---------------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~ 373 (559)
+. -++..|-++|.+.+..++.-|+..|...+..++...+.- =..++..|+++ +..+|+.
T Consensus 296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrr 369 (866)
T KOG1062|consen 296 ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRR 369 (866)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHH
Confidence 10 023444455555555666666666666665554333221 13577889999 9999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204 374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP 453 (559)
Q Consensus 374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~ 453 (559)
|...+..+.. ..++..+ +..|+..|...+++.+...+.-+..++..-.|+..-+ |+.+...|...-.
T Consensus 370 alELs~~lvn--~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~ 436 (866)
T KOG1062|consen 370 ALELSYALVN--ESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGD 436 (866)
T ss_pred HHHHHHHHhc--cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhccc
Confidence 9998887753 3445544 5568888988899999999999998887655554433 5555555655443
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 454 TIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 454 ~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
-|..-+...+..++..+...... .....+...+.+. .++.-+.+.+.+-|.|+|-.|=
T Consensus 437 ~V~~dv~~nll~LIa~~~~e~~~----y~~~rLy~a~~~~-------~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 437 FVNDDVVNNLLRLIANAFQELHE----YAVLRLYLALSED-------TLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred ccchhhHHHHHHHHhcCCcchhh----HHHHHHHHHHhhh-------hhhhhhhhhHHHHHHHHhhhhh
Confidence 33333333333333322111000 0111111111111 1344455566777888887763
No 64
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=4e-07 Score=96.70 Aligned_cols=271 Identities=17% Similarity=0.203 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH
Q 042204 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK 192 (559)
Q Consensus 113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~ 192 (559)
...|+.|...--..-+..+.|+-+ +|.+++.|-+ .--|..|+..|+....-.+-....-..-|+.|..++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 456777777777776766667655 4666666655 345778899999888767777777788899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh--hHhHHHHHHHHHHHhhcCCCCCcHhhH-hc
Q 042204 193 LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--KLSMLRTATWTLSNFCRGMPRPIFEQV-RP 269 (559)
Q Consensus 193 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~-~~ 269 (559)
+|+++-.+++-..+.+.+.|...++.|+..+++.++...++..|..+. +++-+..++.+|+.++++.+.-..... .+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999999999998777888877777777777777774422 446677799999999998754444443 56
Q ss_pred hHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----ChH
Q 042204 270 ALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG----DDF 344 (559)
Q Consensus 270 ~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~ 344 (559)
++...+..|+++ .+-++..+|-+|+.|-...++..=.-.+.+..+.|..+|.++-++||..|+.+||.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 777788888875 678899999999999876665433445667889999999999999999999999999885 233
Q ss_pred HHHHH------------HhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 042204 345 QTQCI------------INCGAL---PYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID 394 (559)
Q Consensus 345 ~~~~~------------~~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~ 394 (559)
++..+ ++..+. -.++.+++.. .+-++.+.+-+|+.+..+...++..+.-
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 33222 222222 3566677777 8999999999999998876666555443
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.73 E-value=3e-06 Score=84.75 Aligned_cols=323 Identities=12% Similarity=0.133 Sum_probs=210.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182 (559)
Q Consensus 103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 182 (559)
.+-+.++++++.-+..|+-++..++.+........++ ...+|.+.....++. -.++..++||++.|+.+- ...+-
T Consensus 370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~v---a~~i~ 444 (858)
T COG5215 370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC-LWVKSTTAWCFGAIADHV---AMIIS 444 (858)
T ss_pred HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce-eehhhHHHHHHHHHHHHH---HHhcC
Confidence 3445678999999999999999988765333344433 346788888777655 689999999999999842 33344
Q ss_pred hCCCHHHHHHhhC---CCCHHHHHHHHHHHHHHhCCCchhhhhhh--ccCCHHHHHHHhch-----hhhHhHHHHHHHHH
Q 042204 183 DHGAVPIFVKLLA---SPNDDIREQAVWALGNVAGDSPRCRDLVL--SEEALIPLLAQLNE-----HAKLSMLRTATWTL 252 (559)
Q Consensus 183 ~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~l~~Ll~ll~~-----~~~~~~~~~a~~~L 252 (559)
..|-++..++... ...+.+...+.|..-|++.+-++.-..+. -....+.+++-|.. .++...+..+..+|
T Consensus 445 p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaL 524 (858)
T COG5215 445 PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSAL 524 (858)
T ss_pred ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 4555555554322 25678888999999999876554321110 11233344443322 23445666677777
Q ss_pred HHhhcCCCCCcHhhHhchHH-----------HHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204 253 SNFCRGMPRPIFEQVRPALP-----------VLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV 317 (559)
Q Consensus 253 ~nL~~~~~~~~~~~~~~~l~-----------~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 317 (559)
..|....|........++.. .+-+.+...| ++++.+.+..|..+.......++.+-+ -++..++
T Consensus 525 gtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~ 603 (858)
T COG5215 525 GTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFI 603 (858)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHH
Confidence 77776665544444333333 2222333233 566777777777766444333333222 2677788
Q ss_pred HhhCCCCCc-chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204 318 ELLGHRSSS-VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG 396 (559)
Q Consensus 318 ~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~ 396 (559)
++|.+.++. +-.....+|+++++.-.++..... ..++|.|..-|+.. +..+...|...++.++..-...+....+.
T Consensus 604 r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~df~~y~d~- 680 (858)
T COG5215 604 RILESTKPTTAFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTDFNIYADV- 680 (858)
T ss_pred HHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhhHHHHHHH-
Confidence 888887554 456688899999986666654443 37899999999887 88899999999999986433444444443
Q ss_pred CHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHH
Q 042204 397 LIGPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKY 434 (559)
Q Consensus 397 ~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~ 434 (559)
+...|++.|+++ +.+++-.++.+++.++..-......|
T Consensus 681 ~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~Y 720 (858)
T COG5215 681 LMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESY 720 (858)
T ss_pred HHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHH
Confidence 788899999876 67888888999988877544444444
No 66
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.2e-07 Score=93.84 Aligned_cols=306 Identities=13% Similarity=0.104 Sum_probs=198.1
Q ss_pred HHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCC
Q 042204 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSND 282 (559)
Q Consensus 204 ~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d 282 (559)
.++.+|-.++..-...|.-+.+..+.++|++.| ..++.-+...++..++|+.-.. +-.......+++..|+.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 344455555555455677777888899999999 5555556666777788876554 33334445889999999999999
Q ss_pred HhHHHHHHHHHHHhccCChhHHH-HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH---HHHHHHhC----CC
Q 042204 283 KEVLTDACWALYFLSNGKNDKIQ-AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF---QTQCIINC----GA 354 (559)
Q Consensus 283 ~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~----g~ 354 (559)
..++.+..|.++.+..+.++..+ .++..-.+..++.+..++...++..++.++.|+.+.+.. ..+..++. -.
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999876554422 345555678999999999999999999999999884432 22222222 24
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH-cCCHHHHHHHhhcC-----------ChhHHHHHHHHHHH
Q 042204 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID-AGLIGPLINLLQNA-----------EINIKNWAAWAISN 422 (559)
Q Consensus 355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~~~i~~Li~lL~~~-----------~~~v~~~a~~aL~n 422 (559)
.+.|++.+... +|-.-.+.++.|.++++.+....+.+++ ..++..+..+|... ...+-........+
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 56777777777 7777778899999998866555555543 23444444444211 11222222233333
Q ss_pred HhcCCCHHHHHHHHHcCCh--HHHHhcCC---CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204 423 ATSGGSHEQIKYLVREKCI--KPLCDLLP---CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE 497 (559)
Q Consensus 423 l~~~~~~~~~~~l~~~~~l--~~L~~lL~---~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 497 (559)
+....+ .. +.+.. +++-.+=+ .++.++.....|.+.++....+..+.. ..+.+.++.+.+.|.-+
T Consensus 646 l~e~~d--~f----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e 715 (743)
T COG5369 646 LSENSD--KF----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIRE 715 (743)
T ss_pred cccccc--cc----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHH
Confidence 333211 00 11111 22222211 123456666677777755433222111 13457889999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 498 KIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 498 ~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
-+.++|.|+.+.|++++-.+++..
T Consensus 716 ~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 716 WLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHhccCcHHHHHHHHHHHHhh
Confidence 999999999999999999998743
No 67
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.2e-06 Score=89.24 Aligned_cols=340 Identities=17% Similarity=0.159 Sum_probs=217.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.++..+++-..+.++.++..|++....+ ....... -+...+.+.+++.+ +-+|..|+-++.++-..+ .
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~e-----y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL---RVDKITE-----YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE---eehHHHH-----HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence 4556666666666776666554443332 1111122 24567888888888 899999999998887743 4
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
+.+.+.|.++.|..++.+.++.|...|+.+|..|....+..-...+....+..++..+... .--.-+..|-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhc
Confidence 5677889999999999999999999999999999876653111111222233344333221 112233455566666
Q ss_pred CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
.|... .....++..+...|.+.+..+...+...+.++....... ...+-..+-+.++.++...+ .++.-|++-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 55544 334556677777888888999988998888887554432 23333346667777777766 7777777777666
Q ss_pred hcCChHHHHHH--------------------------HhCCChHHHHHHh---cCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204 339 VAGDDFQTQCI--------------------------INCGALPYLLVLL---IHSHKKSIKNHACWTISKITAGNREQI 389 (559)
Q Consensus 339 ~~~~~~~~~~~--------------------------~~~g~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~ 389 (559)
....+.....- -++.+-+.+.++. ..- +.+.-++|.+++++++..-.+.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence 65444321100 0111112222222 122 5667788999999997632221
Q ss_pred HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHHH
Q 042204 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENILK 468 (559)
Q Consensus 390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il~ 468 (559)
.+.+..|++++...-..+..+++..+..+..... ..... ++..++..+++ .+|+.+..-.|.++....
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-NKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAE 453 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC-Cchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence 5689999999998877788888888998887632 22222 56667776755 678888888888887654
Q ss_pred hh
Q 042204 469 VG 470 (559)
Q Consensus 469 ~~ 470 (559)
.-
T Consensus 454 ~i 455 (734)
T KOG1061|consen 454 RI 455 (734)
T ss_pred cc
Confidence 43
No 68
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.69 E-value=4e-06 Score=88.54 Aligned_cols=354 Identities=14% Similarity=0.137 Sum_probs=219.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182 (559)
Q Consensus 103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 182 (559)
.+++.+.+.|.+.++.|+.-|.+=+... .-..+.--+..++..++++|.+.+ +++|..|.+||+-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 7888999999999999999988766653 222333334468889999999988 999999999999999744433321
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh-----hhHhHHHHHHHHHHHhhc
Q 042204 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH-----AKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 183 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~-----~~~~~~~~a~~~L~nL~~ 257 (559)
-.+..|+.-+-+.....+..+.-.|......-+..........+.+.+...+.+. ....++..++-.+..+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 2345566554445555555444444333322222223333444555555555321 222355555555555443
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIG 336 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~ 336 (559)
.....-......++..++.-+.+...-|+..++.+|+.++...+... -.+++..|..-|..+ .......-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l----y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL----YVELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 33111122445666677777788888999999999999985544221 123566666666554 3333444566777
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHh---cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-------
Q 042204 337 HIVAGDDFQTQCIINCGALPYLLVLL---IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ------- 406 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~------- 406 (559)
.++.........-.+ .+++.+.+.. ... +.++|+....++..+....|..+-..+.. ++..+++.+.
T Consensus 239 ~i~r~ag~r~~~h~~-~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHLD-KIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcccc-hhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCC
Confidence 777644433222222 5677777777 555 78899988888888876555554433321 3333333332
Q ss_pred ------------------------cC---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204 407 ------------------------NA---EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC 459 (559)
Q Consensus 407 ------------------------~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~ 459 (559)
++ ++.||++|+.++..+... ..+....+.+ .+-+.++.-++.....|..-+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 00 257999999999988874 3455544433 456778888888888888888
Q ss_pred HHHHHHHHHhhh
Q 042204 460 LKGLENILKVGE 471 (559)
Q Consensus 460 l~~l~~il~~~~ 471 (559)
..++..++..-.
T Consensus 394 f~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 394 FHAYIALLKQTR 405 (1233)
T ss_pred HHHHHHHHHcCC
Confidence 888888776533
No 69
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.2e-05 Score=80.20 Aligned_cols=338 Identities=17% Similarity=0.183 Sum_probs=210.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHH-HHHHHHHHhcC-Cchh
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE-AAWALTNIASK-TSED 177 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~-a~~~L~nl~~~-~~~~ 177 (559)
.++.+.+.+.+.+...+..+...+..++. ...+..+.+.+++..+.+.+.+..+ ..+.+ +..+.-..... .+..
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKS-ALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccch-hhcHHHHHHHHHHHHHhcCCCC
Confidence 45666777777777777788887777643 4556666777888888888877663 33333 33222222221 1111
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
--.++ ..+|.++.-+.+....+|+.|..+.-.+...-+.+.-. -.+++++.-+.. .....+..++..+..+..
T Consensus 211 EPyiv--~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~-~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 211 EPYIV--PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLE-AKWRTKMASLELLGAMAD 283 (569)
T ss_pred CchHH--hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHH-HhhhhHHHHHHHHHHHHH
Confidence 11111 24555555566678889988888777765332221111 134555555523 356777888888998888
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 336 (559)
..|.........++|.+.+.|.+.+++++..+..++..++..-+ ..++ ..+|.|++.+.+++..+ ..++..|+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~-~e~~~~L~ 357 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYT-PECLDSLG 357 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccch-HHHHHhhc
Confidence 77666666778999999999999999999999999988874322 1122 25688888888776433 23444443
Q ss_pred HhhcCChHHHHHHHhCCC----hHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204 337 HIVAGDDFQTQCIINCGA----LPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDAGLIGPLINLLQNAEI 410 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~~~i~~Li~lL~~~~~ 410 (559)
.-..- ..++.-. +|.|..-+... +..+++.++.++.|++. .++..+...+.. ++|.|-..+.+..|
T Consensus 358 ~ttFV------~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~P 429 (569)
T KOG1242|consen 358 ATTFV------AEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVP 429 (569)
T ss_pred ceeee------eeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCCh
Confidence 22110 0112222 34444455555 67888999999999997 356666665554 77888888888899
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh-HHHHHHHHHHHHHH
Q 042204 411 NIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP-TIVTVCLKGLENIL 467 (559)
Q Consensus 411 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~-~v~~~~l~~l~~il 467 (559)
++|..+..||+.+....... .+ .+.++.+.+.+..... .-+..+...+..++
T Consensus 430 EvR~vaarAL~~l~e~~g~~---~f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl 482 (569)
T KOG1242|consen 430 EVRAVAARALGALLERLGEV---SF--DDLIPELSETLTSEKSLVDRSGAAQDLSEVL 482 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhh---cc--cccccHHHHhhccchhhhhhHHHhhhHHHHH
Confidence 99999999999887642211 11 4566666666644322 22333444444444
No 70
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.5e-05 Score=71.59 Aligned_cols=343 Identities=14% Similarity=0.147 Sum_probs=231.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCC---chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERS---PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~---~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
..|.+-.+|..++..++..++..+..++...+. ..+..+++.++++.++.++...+ .++...|...+..|+. .+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence 456667778888888999999999888765321 12566678999999999999888 7999999999999999 788
Q ss_pred hHHHHHhCCCHHHHH--HhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFV--KLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
....+.++..++.+- ++-...+.-.|-.....+..|..-+|.....+..+|.+..|..-+....|.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 888888887776543 333345566677788888888888888888888999999998888666777788888888888
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChh---HHHHHHHh--CcHHHHHHhhCCCCCcc
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVHS--NDKEVLTDACWALYFLSNGKND---KIQAVIEA--GVCPRLVELLGHRSSSV 327 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--g~l~~L~~lL~~~~~~v 327 (559)
|........+....++++.+..++.. .+|--.-.++...+.+.....- .-+.+++. -.++...+.+...++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 88766556666667888888888863 3454444455554444321110 00111211 13445566667788889
Q ss_pred hhhHHHHHHHhhcCChHHHHHHHhCCC--hHHHHHHhcCCCchhHHHHHHHHHHHhhc---CCHHHHH---------HHH
Q 042204 328 LSPALQTIGHIVAGDDFQTQCIINCGA--LPYLLVLLIHSHKKSIKNHACWTISKITA---GNREQIQ---------AVI 393 (559)
Q Consensus 328 ~~~al~~L~nl~~~~~~~~~~~~~~g~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~---------~li 393 (559)
+..|..++|.+-+.. +..+.+...|- ...++.-.-+.....-+..+..+|.+|+. -.++++. .++
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 999999999887644 34555555443 33333333333133345667788888875 1232221 111
Q ss_pred -H-------cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH-HHHHHcCChHHHHhc
Q 042204 394 -D-------AGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI-KYLVREKCIKPLCDL 447 (559)
Q Consensus 394 -~-------~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~l~~L~~l 447 (559)
+ ..-...+..+++.+.++++..+...+..++.. |... ..+...++++...+-
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeeccc
Confidence 1 13456677788888999999999999999874 3333 334445666554443
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.65 E-value=1.3e-06 Score=85.36 Aligned_cols=267 Identities=13% Similarity=0.081 Sum_probs=177.8
Q ss_pred HHHHHHHHHhcCCCHHH--HHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 99 EIFAAMVAGVWSDDNNL--QLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~--~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
+.+..+++++++++.+. +.++.+.|..+++. .+++.+...| +..++.+-+....++++...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 56788999999988655 88999999998774 5667777666 455555555444489999999999999999999
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204 177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL 255 (559)
....++..|+++.++-..+..++.+.++|+.+|+|++-+.. ..+..+++..+-.-|..+- .+.|.-++..||.+.+.|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 99999999999999999998999999999999999985442 3344455555555555554 555777888899999999
Q ss_pred hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
...+.........+.+...-.++.+-|+..... --...+.+. ....+++|+.+|.+...+.+.-+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988744444344555544445555555532211 000111111 113578899999865443333322222
Q ss_pred HHhhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 336 GHIVAG--DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 336 ~nl~~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
..=+.- ....++.+-+-|.+..|..+..++ +..-.+.|..+|.-|.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG 451 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence 211111 111234455668999999999887 6555555555555553
No 72
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.65 E-value=5.1e-06 Score=85.50 Aligned_cols=251 Identities=16% Similarity=0.111 Sum_probs=152.1
Q ss_pred hhhHhHHHHHHHHHHHhhcCCCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204 239 HAKLSMLRTATWTLSNFCRGMPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV 317 (559)
Q Consensus 239 ~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 317 (559)
+.+..++..++-.++.++.--.. ........+=-.|.+.|...+++++-..+.++..+...-.-....-=-.+++|.|.
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 34445555555555544432111 11111222223455666778899988877777766632210000000136899999
Q ss_pred HhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHc
Q 042204 318 ELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDA 395 (559)
Q Consensus 318 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~ 395 (559)
.+|++...+|++.++..++.|+...++....---..+---|+++|++. +..+|+.|..+++.|+. |..+
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~IakaIGPqd-------- 960 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKAIGPQD-------- 960 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCHHH--------
Confidence 999999999999999999999986665221000012334577888888 89999999999999986 4333
Q ss_pred CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcc
Q 042204 396 GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN 475 (559)
Q Consensus 396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~ 475 (559)
++..|++-|+..+...+.....+|.-.+..+.+- .+++.|++=-..++..|+.-+|.++.-+|++.....+
T Consensus 961 -VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--------tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 961 -VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred -HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 4555666666655555544444444444433222 2678888777788888999999999998877544322
Q ss_pred cccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 476 MDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
. |.-.+ .+.|+.-..+.+.-=++.|.++|...
T Consensus 1032 d---------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1032 D---------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred h---------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence 1 22222 35566666666666666666666543
No 73
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1.6e-06 Score=92.18 Aligned_cols=254 Identities=16% Similarity=0.181 Sum_probs=196.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+++|..++.|-| +.-++.|+..|.+++-.. ...+..-..-|++|.++++|+++. .+++---+.+-+.|..-++.+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 456677776665 456788999999988764 777888889999999999999999 8999999999999988889999
Q ss_pred HHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204 179 KVVIDHGAVPIFVKLLAS---PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL 255 (559)
..+++.++-..+++.|.. -+++-|..|+..|+.|+..-+.-+...++.+.+..-+..++.+..+-++.-++-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 999999998999988876 24688899999999999887777788888888888888885544566677789999999
Q ss_pred hcCCCCCcHhh-HhchHHHHHHhhccCCHhHHHHHHHHHHHhccC----ChhHHHHH------------HHhCcH---HH
Q 042204 256 CRGMPRPIFEQ-VRPALPVLAQLVHSNDKEVLTDACWALYFLSNG----KNDKIQAV------------IEAGVC---PR 315 (559)
Q Consensus 256 ~~~~~~~~~~~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~g~l---~~ 315 (559)
-.+.+...... ...+...|..+|.++-++|+..|+.+|+.+..+ .+++...+ ++.-+. ..
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 88775444443 367888899999999999999999999998865 23222221 222122 25
Q ss_pred HHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChH
Q 042204 316 LVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALP 356 (559)
Q Consensus 316 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~ 356 (559)
++.+++..++-++.+..-++..++.+.......+.-....+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 66677788888899988889888887766555444333333
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.4e-06 Score=87.01 Aligned_cols=320 Identities=17% Similarity=0.084 Sum_probs=205.1
Q ss_pred HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204 139 IQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 139 i~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
.-.+++|.++.++.+++ ..+++.|+..|.|++.. ........-..+...+.++..+.+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34568999999999998 79999999999999983 22222222334567777777777777765 44455544332211
Q ss_pred hhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHH
Q 042204 219 CRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYF 295 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 295 (559)
-++. .=-++.++.+|. ...++..+...+.-+..|-...+..-......+++-|..+|.++.++|+.-+=.+++.
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1110 112555555553 3346677777666666665443333333457788999999999999998776666665
Q ss_pred hcc---CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204 296 LSN---GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372 (559)
Q Consensus 296 l~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~ 372 (559)
... .++.. +--...++.++..+.++++.++..|+.-|.-++.-..... ...-+|++..++..+.+.+...++.
T Consensus 235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence 541 22211 1122568889999999999999999888887776544332 2334577888888887762334554
Q ss_pred HHHHHHHHhhc--CCHHHHHHHHHc-CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204 373 HACWTISKITA--GNREQIQAVIDA-GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449 (559)
Q Consensus 373 ~a~~~L~nl~~--~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 449 (559)
.+...-..+.. +.+...+. ++. .+++.|...+.++..+.|..++.-+..+-.....+... ....+...|..-|.
T Consensus 311 ~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhc
Confidence 44332211221 11111111 332 36888888999998999998888887777653322222 23557888999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhh
Q 042204 450 CANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 450 ~~d~~v~~~~l~~l~~il~~~~ 471 (559)
+.+.+|+..++..+.+++....
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999986543
No 75
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.56 E-value=3.9e-06 Score=82.02 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=183.6
Q ss_pred HHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHH
Q 042204 135 IEEVIQSGVVPRFVEFLMREDY-PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNV 212 (559)
Q Consensus 135 ~~~ii~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl 212 (559)
.+.+...|++..|++++..++. ..++.+|++.|-.+.. .++++.++..| +..++.+-+ .+.++.++..+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4566678999999999998873 3579999999999987 68888888877 555555544 36788999999999999
Q ss_pred hCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-CCcHhhH-hchHHHHHHhhccCCHhHHHHHH
Q 042204 213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-RPIFEQV-RPALPVLAQLVHSNDKEVLTDAC 290 (559)
Q Consensus 213 ~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~ 290 (559)
..++.+....++..|+++.++-.. ...++.+.+.+..+|.|+.-... .....++ ..+-.-|..+-.+.|+-.+.+||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 998888777778889999988777 55679999999999999887652 2222222 33444466666677888899999
Q ss_pred HHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 042204 291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSI 370 (559)
Q Consensus 291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v 370 (559)
-+++.++...+ .-..+...|-+..+-.++.+-++.--.. --...+.+. ...-++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999986544 3345566676666666665555421111 001111111 113477889999877 5555
Q ss_pred HHHHHHHHHHhhcC-C-HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 371 KNHACWTISKITAG-N-REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 371 ~~~a~~~L~nl~~~-~-~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
+..+++-++.=++- + ......+.+-|.+..|-++.++.|.--.+-|..||.-+-
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 55555444433321 1 111223346688999988888777655555666665543
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.54 E-value=2.8e-05 Score=78.68 Aligned_cols=242 Identities=18% Similarity=0.075 Sum_probs=166.5
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 100 IFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 100 ~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.++.++..|. .++......++..+.. .+ .+ ..+..|++.|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566777774 4555555555544432 11 11 13788899998887 7899999999987655
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
....+.|+.+|++.++.++..++.+++..-. ...+++...| ++.++.++..++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2467888899999999999888877776321 1346777777 588889999999999887653
Q ss_pred CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
..++.|...+.+.++.|+..|++++..+.. .. .+..+..............+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 355667777889999999999999977742 21 123444433333333333333333333
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW 418 (559)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~ 418 (559)
+.+ .+++.|..+++.+ .++..++++++.+ +++. .++.|+..+.+. .++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDVE---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCcc---------hHHHHHHHhcCc--HHHHHHHH
Confidence 122 4578888888766 3899999999977 4444 677788877654 49999999
Q ss_pred HHHHHhcC
Q 042204 419 AISNATSG 426 (559)
Q Consensus 419 aL~nl~~~ 426 (559)
++..|+--
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99999863
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=8.4e-05 Score=77.49 Aligned_cols=280 Identities=20% Similarity=0.246 Sum_probs=158.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204 149 EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228 (559)
Q Consensus 149 ~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 228 (559)
++..+.. +-+|..||.++.++-+-+++....++ ..+-.+|.+.++-|.-.|+.++-.+|-+.- +.+ ++-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 4445566 88999999999998887787777554 456667888889999999999988874421 222 234
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCc----------------------------HhhHhchHHHHHHhhc
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPI----------------------------FEQVRPALPVLAQLVH 279 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~----------------------------~~~~~~~l~~L~~lL~ 279 (559)
...+.++|.+ -+.=-+..++.+|...++.. +.+. ..-..-+++..-.+|+
T Consensus 219 yrklC~ll~d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLLPD-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhccc-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 5666666632 22222333444555555543 2220 1112335566667888
Q ss_pred cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL 359 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~ 359 (559)
+.++.|...++.++++++... ... .++..|+.+|.+ +..++.-.+..|..++...+.... |++-
T Consensus 298 S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~--------P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFE--------PHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhh--------hhhh
Confidence 999999999999999998433 222 346788888765 455777788888887765543221 3333
Q ss_pred HHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 042204 360 VLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE 438 (559)
Q Consensus 360 ~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 438 (559)
...- +.....++.-=..+|++++.. .++.. +++.|...+.+.|.++...|+.||+.++.... . +..
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~e--sni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~ 428 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANE--SNISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTD 428 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhh--ccHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhh
Confidence 3321 120223334444555555431 11111 23344445555555555555555555544210 0 122
Q ss_pred CChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 439 KCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
.++..|+.++++.|..|+..+.-.|..+++.
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 3455555555555555555555555544443
No 78
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=2.2e-05 Score=84.27 Aligned_cols=384 Identities=15% Similarity=0.131 Sum_probs=246.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.++.....+....++.|...+..+...-..+ . -....+.+.+++...+.+ ..+++..+.....+...- .
T Consensus 276 ~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~--d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~---~ 348 (759)
T KOG0211|consen 276 EVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D--DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAV---G 348 (759)
T ss_pred hccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h--hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHh---c
Confidence 45566666666666677877777777765543222 1 122346788888888888 678777776666655411 1
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC-CchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD-SPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
........++....+++....+.+..++.-...++.. +..++..+.....++.+-.++ .+.+..++...+.....+.-
T Consensus 349 ~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p 427 (759)
T KOG0211|consen 349 PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSP 427 (759)
T ss_pred cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCc
Confidence 1222234567777788777777766655555555422 212223333333444444444 55566666655555444433
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
-.+ ....+...+|.+...+++.++.|+.+..+.+..+-...+..-........++.+..+-....++++...++.+-.
T Consensus 428 ~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~ 505 (759)
T KOG0211|consen 428 ILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQ 505 (759)
T ss_pred cCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHH
Confidence 222 223346678888889999999999999988876654443333344555678888888877788899999988888
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~ 417 (559)
++.... ..+++...-+.+...+.+. ...+++.|+..+.-++..... .......++.++.+..+++...|...+
T Consensus 506 la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 506 LALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred HHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHH
Confidence 776433 2344444555566666665 678999999888888752111 112223677888887777888999888
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204 418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE 497 (559)
Q Consensus 418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 497 (559)
.++.-++.....+. ....+++.+..+..++.+.|+..++..|..+...-... ..+.-..+
T Consensus 579 ~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~p 638 (759)
T KOG0211|consen 579 FSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----------------VRDEEVLP 638 (759)
T ss_pred HHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----------------HHHHHHHH
Confidence 88887776443333 33457899999999999999999999999988653321 22333456
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 042204 498 KIENLQSHENNEIHEKSVKILE 519 (559)
Q Consensus 498 ~l~~L~~~~~~~v~~~a~~il~ 519 (559)
.++.|-.+++.+++-+|..+..
T Consensus 639 ll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 639 LLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHhccCcccchhHHHHHHHH
Confidence 7777777777777766654443
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00032 Score=72.60 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=179.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
+-+-++.+|+++- |-+|..|+.+|..+.-..|+..+ ..+|.|..-|.++++.|+..|+..++.+|..+|.. .
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence 4456678888888 89999999999998885555433 46899999999999999999999999999888763 1
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC-HhHHHHHHHHHH--HhccC
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND-KEVLTDACWALY--FLSNG 299 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~--~l~~~ 299 (559)
+ ..-|.+..++..+.+.=+....+..+.+|+--.| ..-..+++.|.+++++.. ..+...++.++. +++.+
T Consensus 217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1 1234455555444444455556666666665433 233567888888887664 334444544442 33333
Q ss_pred ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 300 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
-++... .+. -.++.|-.++.+.++.++.-++-+++.+....+...+.. -+.++..|.+. ++.+|..|...+.
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 222211 111 146777788888999999999999999998776554422 35788889888 9999999999998
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 448 (559)
-+.. .+++..+ +..|+.-+... ....+.+.+.-+..+++..+...+.-+-. .+..|+++.
T Consensus 362 gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa 422 (877)
T KOG1059|consen 362 GMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELA 422 (877)
T ss_pred HHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHH
Confidence 8853 3444443 44455544433 34677777777777776544433332222 244455543
No 80
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.46 E-value=4.2e-05 Score=81.12 Aligned_cols=378 Identities=15% Similarity=0.166 Sum_probs=206.3
Q ss_pred HHHHhcC--CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 104 MVAGVWS--DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 104 lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
.++.|.+ .|.+++..|..+...++..-. +.... --..++|.|++-|++ +-.|..|+++++-|+...-.....-
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~-eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGN-ELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhh-hhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhh
Confidence 3344443 456777777777776655321 11110 112356666666654 4678999999999998543333233
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
+-..+++.+..++......++..++.++-.+...... ...... .-++..+..++ ...+..+...++.+|..+....|
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLI-SESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhccc
Confidence 3345788888888877777777777777666532211 001111 11233444445 56677788888888888888876
Q ss_pred CCcHhhHhchHHHHHHhhccCCHh--HHHHHH--------------------------------------------HHHH
Q 042204 261 RPIFEQVRPALPVLAQLVHSNDKE--VLTDAC--------------------------------------------WALY 294 (559)
Q Consensus 261 ~~~~~~~~~~l~~L~~lL~~~d~~--v~~~a~--------------------------------------------~~L~ 294 (559)
.........+++.++.+++++--. ....++ .+..
T Consensus 726 s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA 805 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA 805 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence 555555566777777766543210 001110 0111
Q ss_pred HhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204 295 FLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372 (559)
Q Consensus 295 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~ 372 (559)
.|+...++. ...+...++.-+.+ .+..++.-|+-.+|.+-.+.+... ..+....+++.++++ +.+++.
T Consensus 806 ~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp-~edvks 875 (1233)
T KOG1824|consen 806 ALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSP-SEDVKS 875 (1233)
T ss_pred HHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCC-hHHHHH
Confidence 111000000 00112223322332 345677778888887776544221 124455788889999 999999
Q ss_pred HHHHHHHHhhcCCHHH-HHHHHH---------cCCHHHHHHHhhcCC-----------------------hhHHHHHHHH
Q 042204 373 HACWTISKITAGNREQ-IQAVID---------AGLIGPLINLLQNAE-----------------------INIKNWAAWA 419 (559)
Q Consensus 373 ~a~~~L~nl~~~~~~~-~~~li~---------~~~i~~Li~lL~~~~-----------------------~~v~~~a~~a 419 (559)
.|..+|++++.|+-+. +..+.+ .=++..|...+.... ...|.-.+.+
T Consensus 876 AAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAEC 955 (1233)
T KOG1824|consen 876 AASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAEC 955 (1233)
T ss_pred HHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHH
Confidence 9999999999875432 222211 001223333332222 2233334444
Q ss_pred HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHH
Q 042204 420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKI 499 (559)
Q Consensus 420 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l 499 (559)
|+.++.. +|+ .+++.|-..+.++++..+..++.++.-.+.... .+.-..+. ..+...
T Consensus 956 LGkL~l~-epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p------------~~id~~lk--~~ig~f 1012 (1233)
T KOG1824|consen 956 LGKLVLI-EPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP------------QPIDPLLK--QQIGDF 1012 (1233)
T ss_pred hhhHHhC-ChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCC------------CccCHHHH--HHHHHH
Confidence 4444433 222 256777778888888888888777654432211 11111111 113455
Q ss_pred HHHhcCCCHHHHHHHHHHHHhh
Q 042204 500 ENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 500 ~~L~~~~~~~v~~~a~~il~~~ 521 (559)
..+..+++.+|++.|...+...
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSa 1034 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSA 1034 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHH
Confidence 5677888899998888777653
No 81
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.5e-06 Score=86.22 Aligned_cols=306 Identities=15% Similarity=0.208 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204 114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL 193 (559)
Q Consensus 114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 193 (559)
+.+..|...+-+-+++...-.+.-+.+..+++.|+++|+.++ ..+..-+...++|..-..+.-+..+.+.|++..|+++
T Consensus 403 ~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 403 DLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 344444433333334322233445556778999999999988 6888888889999888788889999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhCCCchh-hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC--CcHhhH---
Q 042204 194 LASPNDDIREQAVWALGNVAGDSPRC-RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR--PIFEQV--- 267 (559)
Q Consensus 194 L~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~--- 267 (559)
+.+.+..+|....|.+..+....... +=..+..-++..++... +++...++..++..|.|+..+... ......
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 99999999999999999987544332 22344555688888888 777888999999999999874421 111111
Q ss_pred ---hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC-----------CCCcchhhHH
Q 042204 268 ---RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH-----------RSSSVLSPAL 332 (559)
Q Consensus 268 ---~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~-----------~~~~v~~~al 332 (559)
.-....+++-+...+|-.....|..|.+++..++...+.+.+. .++..+.++|.. .+..+..+-.
T Consensus 561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s 640 (743)
T COG5369 561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPIS 640 (743)
T ss_pred ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccc
Confidence 2245566677777777777777888888886666655555443 444444444421 1223444445
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHhhc---CC------HHHHHHHHHcCCHHHH
Q 042204 333 QTIGHIVAGDDFQTQCIINCGALPYLLVLLI--HSHKKSIKNHACWTISKITA---GN------REQIQAVIDAGLIGPL 401 (559)
Q Consensus 333 ~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~~------~~~~~~li~~~~i~~L 401 (559)
.+..++....+.....+.-. |.+-.+=. ...+.++-.+..|.+.|+.. ++ .+.++.+.+.|+-+.|
T Consensus 641 ~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l 717 (743)
T COG5369 641 YTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWL 717 (743)
T ss_pred eeeecccccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHH
Confidence 55555555433222211100 22211111 11145577788899888754 22 3666777788888888
Q ss_pred HHHhhcCChhHHHHHHHHHHHHh
Q 042204 402 INLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 402 i~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
..+-.++++.+++.+-.||.++-
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhhh
Confidence 88777888899999999998863
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=98.42 E-value=0.00047 Score=72.80 Aligned_cols=238 Identities=16% Similarity=0.121 Sum_probs=164.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch--HHHHHhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQYEAAWALTNI 170 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~v~~Lv~lL~~~~------~~~~~~~a~~~L~nl 170 (559)
..+.+.++.|++.+.+.++.++-.+.+++....... .+.+.++=+.+.+-++|.+.. ....+.-|+.+|...
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999998899999999999877542212 335677777788888888722 156788888899998
Q ss_pred hcCCchhHHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204 171 ASKTSEDTKVVIDHGAVPIFVKLLASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT 249 (559)
Q Consensus 171 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~ 249 (559)
+. .++....---.+-||.|+..+.+.+. .+...|..+|..++ ..+.-+..+.+.|+++.|...+.+ .+.....++
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 88 55554222222579999999987666 99999999999999 445668888899999999999844 445677788
Q ss_pred HHHHHhhcCCCCC----cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH-HHHHHHhC----cHHHHHHhh
Q 042204 250 WTLSNFCRGMPRP----IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK-IQAVIEAG----VCPRLVELL 320 (559)
Q Consensus 250 ~~L~nL~~~~~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g----~l~~L~~lL 320 (559)
.++.+++...... .......+++.+...+..........+|..|..+....+.. .+...... +..-+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8888877654311 12223455666777776666777788888888887555311 11112222 334445555
Q ss_pred CCC-CCcchhhHHHHHHHhhc
Q 042204 321 GHR-SSSVLSPALQTIGHIVA 340 (559)
Q Consensus 321 ~~~-~~~v~~~al~~L~nl~~ 340 (559)
.+. .+.-|.+++...+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 553 45567777777766654
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.41 E-value=6.2e-05 Score=76.19 Aligned_cols=241 Identities=17% Similarity=0.012 Sum_probs=169.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
.++.++..|...+.+.++..+++++..... + .++..|+..|.+.++.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------
Confidence 678888888544437888877766643222 1 137899999999999999999999997621
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 302 (559)
......|+..+ .+.++.++..++.++.... ....+.+..+|++.++.|+..++.+|+.+-..
T Consensus 116 ---~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 116 ---RQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ---hHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 12457788888 6778888888776666522 12356788889999999999999999998732
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 303 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
..++.|...+.+.++.|+..|+..++.+-. + ..+..+....... .......+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 235667778999999999999999977633 2 1234555544433 333444444444333
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHH
Q 042204 383 AGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG 462 (559)
Q Consensus 383 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~ 462 (559)
+++ ..++.|..+++++. ++..++++++.+-.. ..++.|+..+... .+...+-++
T Consensus 237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHHH
Confidence 333 26777888887654 899999999976542 2577777777543 388999999
Q ss_pred HHHHH
Q 042204 463 LENIL 467 (559)
Q Consensus 463 l~~il 467 (559)
+..|.
T Consensus 291 ~~~It 295 (410)
T TIGR02270 291 FSLIT 295 (410)
T ss_pred HHHhh
Confidence 99987
No 84
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.40 E-value=2.6e-05 Score=78.92 Aligned_cols=336 Identities=15% Similarity=0.139 Sum_probs=201.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-CchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
..+..+++.|++..+..+..|+.....+..--+ -.....+...|. .|.+-|.... |++.-..+.++..|.+.. ..
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~-~~ 679 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVH-RF 679 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhh-cc
Confidence 467788889999999999988876665432110 122333444443 3566777666 888777777777766521 11
Q ss_pred H-HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh---hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204 178 T-KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC---RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253 (559)
Q Consensus 178 ~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~ 253 (559)
+ ..---.|++|.|...|.+.+..+..+.+..++.||..+|++ |+... +--.|+..| .+.+.+++++|..++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG 755 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFG 755 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhh
Confidence 1 11112589999999999999999999999999999887763 22211 123466677 6678899999999999
Q ss_pred HhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204 254 NFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ 333 (559)
Q Consensus 254 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 333 (559)
.+++.- --..++..|+.-|+..+...+....-+++-.+...... .++|.|+.=-..++..|+.-.++
T Consensus 756 ~Is~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 756 CISRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred hHHhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHH
Confidence 888753 11345555665555554444444444444333222211 34566666556677889988999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH--HHHHHHcCCHHHHHHHhhcCChh
Q 042204 334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ--IQAVIDAGLIGPLINLLQNAEIN 411 (559)
Q Consensus 334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~li~~~~i~~Li~lL~~~~~~ 411 (559)
+++-+...-.+.....+ ..+.|.|-+.|.+. ++.-|..|...+..++.+.+.. ....+. ++..|..-+-.+.+.
T Consensus 823 am~fmFeyig~~s~dYv-y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPh 898 (975)
T COG5181 823 AMCFMFEYIGQASLDYV-YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPH 898 (975)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcH
Confidence 98887764433222121 14677888888888 8999999999999997642211 111111 122222222345666
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 412 IKNWAAWAISNATSGG-SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 412 v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
++......+-.++..- ......| +.+| |-++...|+. ..|...+++..
T Consensus 899 vi~~~~Eg~e~~~~~lg~g~~m~Y-v~qG--------LFHPs~~VRk-~ywtvyn~myv 947 (975)
T COG5181 899 VIQSFDEGMESFATVLGSGAMMKY-VQQG--------LFHPSSTVRK-RYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHH-HHHh--------ccCchHHHHH-HHHHHHhhhhh
Confidence 6655544444443321 1122233 3333 4466666554 45555565544
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00014 Score=75.94 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=121.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
..|.++|.|.....+++|+..+..+.....+ . +..+|.+|+...+.+ ++++...---|...|...++-.-
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL-- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL-- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee--
Confidence 4678889999999999999888877665422 2 236799999999888 89999888888888885544221
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHH----HHhchhhhHhHHHHHHHHHHHhhc
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL----AQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll----~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
=-|..+-+-|+++++.+|..|+++|+.|-- -+ +.|++ +....+..+-+++.|+.++-.|-+
T Consensus 108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~-----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV-------PM-----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS 172 (968)
T ss_pred ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hh-----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence 136788889999999999999999988721 11 22221 222256678889999999988877
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
-.+... ..++..+-.+|.+.++-|.-.|+.++-.+|-
T Consensus 173 Ld~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 173 LDPEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred CChhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 654332 2455666677788888888888888777663
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=9.3e-05 Score=69.15 Aligned_cols=269 Identities=16% Similarity=0.150 Sum_probs=165.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI--DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD 221 (559)
Q Consensus 144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 221 (559)
...++.++.+.+ |.++..|...+..++.. .-+.+. +.-.++.+.+++....+ .+.|+.+|.|++.+ +..|.
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHH
Confidence 356789999999 99999999999998885 112221 23467888899887666 78899999999866 44566
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH--h----chHHHHHHhhccCC---HhHHHHHHHH
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV--R----PALPVLAQLVHSND---KEVLTDACWA 292 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~--~----~~l~~L~~lL~~~d---~~v~~~a~~~ 292 (559)
.++.. .+..++..+ .+........+|..|+|+++.......... . ..+..++...-+.+ ..-..+....
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 66654 555666666 444456778889999999987632221111 1 33333333332221 2234566677
Q ss_pred HHHhccCChhHHHHHHHhCcH--HHHHHhhCCCCCcchh-hHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCC--
Q 042204 293 LYFLSNGKNDKIQAVIEAGVC--PRLVELLGHRSSSVLS-PALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHS-- 365 (559)
Q Consensus 293 L~~l~~~~~~~~~~~~~~g~l--~~L~~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~-- 365 (559)
+.|++.....+ ..+.+...+ +.+..+- +.+..+|. ..+.+|.|+|.....+- .+++. .+++.++-=|-.+
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhccc-ccchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence 88888655443 234443322 2333333 34445544 47889999887655443 23332 2333333222111
Q ss_pred -----------------------CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHH
Q 042204 366 -----------------------HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAIS 421 (559)
Q Consensus 366 -----------------------~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~ 421 (559)
+++.+|+.-.-+|.-+|+ +...++.+.+.|+.+.+-.+-+.. +++++ .++.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 278899999999998886 356677888888888777766554 44554 4555555
Q ss_pred HHhcC
Q 042204 422 NATSG 426 (559)
Q Consensus 422 nl~~~ 426 (559)
++...
T Consensus 311 q~Lv~ 315 (353)
T KOG2973|consen 311 QMLVR 315 (353)
T ss_pred HHHHh
Confidence 55544
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=7.1e-06 Score=83.62 Aligned_cols=219 Identities=13% Similarity=0.091 Sum_probs=147.7
Q ss_pred HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC---h--hHH-H
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK---N--DKI-Q 305 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~---~--~~~-~ 305 (559)
+..+. .+.+..++..|+.+|..|..+. ....-+....++++.+++..|+..|+..++...... . +.- .
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 44444 6667788888888888777643 122345667788899999999998866655444221 1 111 1
Q ss_pred HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh--hc
Q 042204 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI--TA 383 (559)
Q Consensus 306 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 383 (559)
.+.+ .++..+...+.+.+..||..|..+||.+-.-+++..+..++..++..+-..=. -.+......++- ++
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCccc
Confidence 2222 46788999999999999999999999998877766665555433332211110 011111122221 11
Q ss_pred -----------CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 042204 384 -----------GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN 452 (559)
Q Consensus 384 -----------~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d 452 (559)
...+.-..++..|..-.++.-|.++-.+||+.|+..++.++.. .|..... .+..|+++++++.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence 1223345677888888889888888889999999999999985 3444333 6889999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042204 453 PTIVTVCLKGLENILKV 469 (559)
Q Consensus 453 ~~v~~~~l~~l~~il~~ 469 (559)
..|+..++.+|..|...
T Consensus 424 ~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.35 E-value=0.00022 Score=71.43 Aligned_cols=251 Identities=27% Similarity=0.306 Sum_probs=173.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.+++.+.+.+...+..++..+..+-.. -.+|.+..++.+.+ +.+|..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh-----
Confidence 3678899999999999999999987775332 27899999999999 89999999988887762
Q ss_pred HHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhh-----------HhHHH
Q 042204 179 KVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAK-----------LSMLR 246 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~-----------~~~~~ 246 (559)
..++.|+.++. +++..+|..|.++|+.+-.. ..+.+++..+..... ..++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 46889999998 59999999999999998321 136777777743221 12344
Q ss_pred HHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 042204 247 TATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSS 326 (559)
Q Consensus 247 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 326 (559)
.+...+..+-. ...++.+...+.+.+..++..+..+|+.+.... ..+.+.+...+.+.+..
T Consensus 168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 44444444432 335667778888888888888888888887543 23457788888888888
Q ss_pred chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh
Q 042204 327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ 406 (559)
Q Consensus 327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~ 406 (559)
++..++..++.+-... ....+...+... +..++..+...+... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 8888888888765422 245666677666 555555554444311 111 12334455556
Q ss_pred cCChhHHHHHHHHHHHHhcC
Q 042204 407 NAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 407 ~~~~~v~~~a~~aL~nl~~~ 426 (559)
+.+..++..+..++..+...
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 66677777777777766553
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.00017 Score=67.86 Aligned_cols=300 Identities=13% Similarity=0.130 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204 98 LEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRF--VEFLMREDYPQLQYEAAWALTNIASKTS 175 (559)
Q Consensus 98 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~L--v~lL~~~~~~~~~~~a~~~L~nl~~~~~ 175 (559)
-+.++.++..+..+|.++-..|...+.++... +.....+.++.....+ ..+-...+ .-.|......+..|.+-++
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSp 203 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISP 203 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCH
Confidence 36788899999999999888888999887544 4556666666655543 33333333 4778888899999999999
Q ss_pred hhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHHHH
Q 042204 176 EDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWTLS 253 (559)
Q Consensus 176 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~L~ 253 (559)
+.....-.+|.+..|..=|+. .+.-++..++.....++.... .|+.+...|.++.+.+.+.... ++--.-.++....
T Consensus 204 esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfg 282 (524)
T KOG4413|consen 204 ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG 282 (524)
T ss_pred HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence 999999999999999988876 777788888888888875433 4778888899998888884222 2211111332333
Q ss_pred Hhhc----CC--CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCc--HHHHHHhhCC-CC
Q 042204 254 NFCR----GM--PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGV--CPRLVELLGH-RS 324 (559)
Q Consensus 254 nL~~----~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~--l~~L~~lL~~-~~ 324 (559)
.+.. .+ +..........+....+.+..+|+..+..|+.+++.+..+.. ..+.+...|- ..+++....+ +.
T Consensus 283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqna 361 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNA 361 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccc
Confidence 3222 21 111111122334445566778999999999999999985544 3455666553 4444444444 34
Q ss_pred CcchhhHHHHHHHhhcCC---hHH----------HHHHHh-------CCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204 325 SSVLSPALQTIGHIVAGD---DFQ----------TQCIIN-------CGALPYLLVLLIHSHKKSIKNHACWTISKITAG 384 (559)
Q Consensus 325 ~~v~~~al~~L~nl~~~~---~~~----------~~~~~~-------~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 384 (559)
..-+..++++|.+|+... +++ +..+.+ ..-+..+..+++.+ .++++..+..++..|++.
T Consensus 362 hakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 362 HAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred cchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcC
Confidence 456778899999998632 111 111111 13356678888888 999999999999999765
Q ss_pred CHHHHHHHHHcCCHHHHHH
Q 042204 385 NREQIQAVIDAGLIGPLIN 403 (559)
Q Consensus 385 ~~~~~~~li~~~~i~~Li~ 403 (559)
.=.+...+...++++.+.+
T Consensus 441 PWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 441 PWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred cHHHHHHhcCccceeeecc
Confidence 3333333335566655544
No 90
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00058 Score=73.40 Aligned_cols=303 Identities=14% Similarity=0.196 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 98 LEIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 98 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
++.++-+...|.+ .++.++..|+..+..+.+. .+....+...|++..|+.+|.+. |..|..++.+|..+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence 4555666666664 5678888899888887665 78899999999999999998764 6999999999999999 788
Q ss_pred hHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCC---chhhhhhhcc----------CCHHHHHHHhchh-hh
Q 042204 177 DTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDS---PRCRDLVLSE----------EALIPLLAQLNEH-AK 241 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~---~~~r~~i~~~----------g~l~~Ll~ll~~~-~~ 241 (559)
......+.|++..+..++- +.++..|.+++..|+.+..+. |..+-.+++. +.-...+..+... .+
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 8888888999888887765 577889999999999997543 2222111110 0112222222110 11
Q ss_pred H------hHHHHHHHHHHHhh----cCC---C--------------------------------------CCcHhhHhch
Q 042204 242 L------SMLRTATWTLSNFC----RGM---P--------------------------------------RPIFEQVRPA 270 (559)
Q Consensus 242 ~------~~~~~a~~~L~nL~----~~~---~--------------------------------------~~~~~~~~~~ 270 (559)
+ ..+......+..+. +.. | ........++
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence 1 11222222222221 100 0 0011222445
Q ss_pred HHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHH
Q 042204 271 LPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQC 348 (559)
Q Consensus 271 l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 348 (559)
+..+.+++..++ .....-.-.++..|....+.....+-..|.+|.++.-+...+..+-..|++.|-.++.+. -..+.
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDA 2083 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHH
Confidence 555566665333 222333333444445555555566666799999999999988888899999999998744 45566
Q ss_pred HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcC
Q 042204 349 IINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNA 408 (559)
Q Consensus 349 ~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~ 408 (559)
+.....+..++..++.. +..---|+.+|-.+.. ...+.+...++.|++|.|+.+|...
T Consensus 2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 66666667777777654 3334467777777765 4566677778999999999999754
No 91
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00036 Score=70.39 Aligned_cols=293 Identities=14% Similarity=0.119 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhC---CCchhhhhhhccCCHHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAG---DSPRCRDLVLSEEALIPLL 233 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~r~~i~~~g~l~~Ll 233 (559)
|..|...+.-|.-+-+ .|...-.-.-...++.|.++|.+++++++..+-.+|+++-. .+|.. +-....++.++
T Consensus 181 ~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv 256 (675)
T KOG0212|consen 181 PMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLV 256 (675)
T ss_pred chHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhcc
Confidence 6666666666665554 23222111123567888899999999999888887777642 22321 11223566777
Q ss_pred HHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHh-HHHHHHHH---HHHhccCChhHHHHHHH
Q 042204 234 AQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKE-VLTDACWA---LYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 234 ~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~---L~~l~~~~~~~~~~~~~ 309 (559)
..+ +++++.++..|+.-+..+..-.+..-.....+++..+++++.++++. +...+... +..+....... +. ++
T Consensus 257 ~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~-~~-id 333 (675)
T KOG0212|consen 257 PHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK-EE-ID 333 (675)
T ss_pred ccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc-cc-cc
Confidence 777 66777787777666666666555555666788888888888776653 33333222 22232211111 11 33
Q ss_pred h-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204 310 A-GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388 (559)
Q Consensus 310 ~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 388 (559)
. .++..+...+.++....+..++.-+..+-...+.+. .+....+.+.|+.-|.++ +..+...+...++++|......
T Consensus 334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcccc
Confidence 2 367888889999999999999988888776655443 344557888999999888 8899999999999998742221
Q ss_pred HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHH
Q 042204 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENIL 467 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il 467 (559)
.+. .++..|+++...+..-+...+...+..++.--+++.+ ...+..+|.. ++-+.......+|..++
T Consensus 412 --~~~--~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I--------Yr~~a~ILe~e~nl~FAstMV~~Ln~iL 479 (675)
T KOG0212|consen 412 --NLR--KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI--------YRSIADILEREENLKFASTMVQALNTIL 479 (675)
T ss_pred --cHH--HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH--------HHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 011 1334455555555555666777777777765555653 3445555544 44555555666666665
Q ss_pred Hhh
Q 042204 468 KVG 470 (559)
Q Consensus 468 ~~~ 470 (559)
--+
T Consensus 480 lTS 482 (675)
T KOG0212|consen 480 LTS 482 (675)
T ss_pred ccc
Confidence 433
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.30 E-value=1.3e-06 Score=57.32 Aligned_cols=40 Identities=40% Similarity=0.906 Sum_probs=38.1
Q ss_pred CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204 174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213 (559)
Q Consensus 174 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 213 (559)
++++++.+++.|++|.|+++|.++++++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999997
No 93
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00019 Score=67.11 Aligned_cols=272 Identities=13% Similarity=0.150 Sum_probs=168.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+..++..+.+.++.++..|+..+..+... .-..-.--+.-.++.+.+++...+ + ...|+.+|.|++. +...+.
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~ 77 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRK 77 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHH
Confidence 346789999999999999999888886544 111111112346788899998877 4 6789999999999 788888
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc-----CCHHHHHHHhch-hhh-HhHHHHHHHHH
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE-----EALIPLLAQLNE-HAK-LSMLRTATWTL 252 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-----g~l~~Ll~ll~~-~~~-~~~~~~a~~~L 252 (559)
.+++. .+..+...+.++...+.+..+..|.|++.+...++...... ..+..++..+.+ +.+ ..-.......+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 88877 77777888888877788889999999998876655443221 123333333322 222 12344566778
Q ss_pred HHhhcCCCCCcHhhHhchH--HHHHHhhccCCHhHH-HHHHHHHHHhccCChhHHHHHHHh--CcHHHHH----------
Q 042204 253 SNFCRGMPRPIFEQVRPAL--PVLAQLVHSNDKEVL-TDACWALYFLSNGKNDKIQAVIEA--GVCPRLV---------- 317 (559)
Q Consensus 253 ~nL~~~~~~~~~~~~~~~l--~~L~~lL~~~d~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~---------- 317 (559)
+||++....+........+ +.+..+-. .+..++ ...+.+|.|.|.....+ ..+++. .+++.|.
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccC
Confidence 8888765333333332222 23444333 455554 45677788877443322 233332 2333322
Q ss_pred -----------HhhC-----CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204 318 -----------ELLG-----HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI 381 (559)
Q Consensus 318 -----------~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 381 (559)
++|. .+++.++..-+.+|.-++.. ...++.+.+.|+.+.+-.+=+..+++++++..-.....+
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 2221 14566888889999888874 445567778788877777666654666665444444333
No 94
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.30 E-value=0.00029 Score=70.61 Aligned_cols=249 Identities=24% Similarity=0.300 Sum_probs=169.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204 142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD 221 (559)
Q Consensus 142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 221 (559)
..++.+++++.+.+ +.++..|++.++.+.. .-+++.+..++.+.++.+|..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h----
Confidence 36788999999987 8999999999877766 2478999999999999999999999998721 1
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCH------------hHHHHH
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK------------EVLTDA 289 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a 289 (559)
..+++++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 147889999955788899999999999886542 35556666665542 234444
Q ss_pred HHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 042204 290 CWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS 369 (559)
Q Consensus 290 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~ 369 (559)
..+++.+-+ ...++.+...+.+....++..|..+|+.+.... ..+.+.+...+.++ +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444443321 124577777788777788888888888877654 23456677777777 888
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204 370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449 (559)
Q Consensus 370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 449 (559)
+|..++.+++.+-. .. .++.++..+.+.+..++..+..++...- .. .....+...+.
T Consensus 229 vr~~~~~~l~~~~~--~~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGD--EE---------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCc--ch---------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence 88888888877632 22 4556667777777666655555554110 00 12334444455
Q ss_pred CCChHHHHHHHHHHHHHH
Q 042204 450 CANPTIVTVCLKGLENIL 467 (559)
Q Consensus 450 ~~d~~v~~~~l~~l~~il 467 (559)
+.+..++......+..+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 556665555555555433
No 95
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.8e-05 Score=78.46 Aligned_cols=252 Identities=15% Similarity=0.124 Sum_probs=162.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH---HHHHHhhcCC---CCC
Q 042204 189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT---WTLSNFCRGM---PRP 262 (559)
Q Consensus 189 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~---~~L~nL~~~~---~~~ 262 (559)
-|..+..+.+..|+.+|+.+|..+... ..... -.....+.++ .+.+..++..|+ |.+.|.+-.. ...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~-----~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSK-----ACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccc-ccccH-----HHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 366666677777777777777776542 11111 1245566666 666778888874 5555555222 122
Q ss_pred cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-
Q 042204 263 IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG- 341 (559)
Q Consensus 263 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~- 341 (559)
.......++..+...+.+-...|+..|..+|+.+-..+.+.++..++..++..+-..-.. .-+-..+..=|-.++|
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a---hkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA---HKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc---ccchHHHHhcCCcccCc
Confidence 233446677788888888889999999999999887777777766665555432221100 0011112221211111
Q ss_pred ----------ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChh
Q 042204 342 ----------DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEIN 411 (559)
Q Consensus 342 ----------~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~ 411 (559)
.++....++.+|+-..++.-|.+. -.+||+.|...++.++..+|..... .+..|++++.++..+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence 233445678889999999999887 8899999999999998866654433 466899999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204 412 IKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL 463 (559)
Q Consensus 412 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l 463 (559)
||..|+.+|..++.+.. ++...++.++..|.+..+++++...+.|
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999887531 2223455566666666666665544444
No 96
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0014 Score=67.95 Aligned_cols=324 Identities=19% Similarity=0.164 Sum_probs=194.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182 (559)
Q Consensus 103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 182 (559)
+.++.|.+.--..+.-+.-.+.-++.. +.+..+. ++..+.+=|.+.+ +..+..|+.+++|+.+ .+.+..+.
T Consensus 78 EaV~LLss~kysEKqIGYl~is~L~n~-n~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~ 148 (938)
T KOG1077|consen 78 EAVNLLSSNKYSEKQIGYLFISLLLNE-NSDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA 148 (938)
T ss_pred HHHHHhhcCCccHHHHhHHHHHHHHhc-chHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh
Confidence 445666665444444444444443332 2333333 3344555566666 7889999999999987 45555443
Q ss_pred hCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204 183 DHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 183 ~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
. -|+ ++|-+ ..+-++..|+.+|..+-..+|. .+-..+....++.+| .+.+..+...+...+.-|+...|
T Consensus 149 ~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 149 D--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred h--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCC
Confidence 2 233 45544 3467888899999998877664 333445678888888 55567777777777777777665
Q ss_pred CCcHhhHhchHHHHHHhhc-------------cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CC
Q 042204 261 RPIFEQVRPALPVLAQLVH-------------SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SS 325 (559)
Q Consensus 261 ~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~ 325 (559)
..-...+..++..|..+.. -+.|.+...++++|.+.-.-.+.-. ...-..+++.++.....+ ..
T Consensus 220 ~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~-r~~l~evl~~iLnk~~~~~~~k 298 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPST-RARLNEVLERILNKAQEPPKSK 298 (938)
T ss_pred HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchH-HHHHHHHHHHHHhccccCcccc
Confidence 4433333334433333321 1357888999999988753222111 111112445555544421 11
Q ss_pred cc-----hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHH
Q 042204 326 SV-----LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGP 400 (559)
Q Consensus 326 ~v-----~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~ 400 (559)
.+ +...+.-.-+++..-+..-+.+. ..+..|-++|.+. ...+|.-|...++.++.. ...+..+-.+ .+.
T Consensus 299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~ 372 (938)
T KOG1077|consen 299 KVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--QDT 372 (938)
T ss_pred chHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--HHH
Confidence 12 22233333344433332222222 4577888999988 889999999999988764 2223333333 677
Q ss_pred HHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204 401 LINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC 459 (559)
Q Consensus 401 Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~ 459 (559)
++..|+ ..|..+++.|+..|..++... +.+. ++..|.+.|.+.|..+++-.
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHH
Confidence 888888 678999999999999998754 3333 45567777888887776643
No 97
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.23 E-value=0.00032 Score=65.84 Aligned_cols=230 Identities=15% Similarity=0.153 Sum_probs=154.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh-CCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204 149 EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID-HGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLS 225 (559)
Q Consensus 149 ~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 225 (559)
++++.-+ +-.+.-|..+|.++.. .++.|..+-- ...-..++.++++ ...+++-+.+.+++-+... +.+.+.+-+
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 4444445 6788999999999999 6777776543 3345567777766 5578888888888887644 333322221
Q ss_pred -cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH--hhHhc-hHHHHHHhhc--cCCHhHHHHHHHHHHHhccC
Q 042204 226 -EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF--EQVRP-ALPVLAQLVH--SNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 226 -~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~~~-~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~ 299 (559)
...+.-++.+++......+.+-++..+.|++...|..-. ....+ +.+..-.++. ..|++++.+.-..=+.+...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 224566777776777889999999999999985432221 11223 3333322332 34666655443322222111
Q ss_pred ---------------------Ch---------hHHHHHHHh--CcHHHHHHhhCCCCCc-chhhHHHHHHHhhcCChHHH
Q 042204 300 ---------------------KN---------DKIQAVIEA--GVCPRLVELLGHRSSS-VLSPALQTIGHIVAGDDFQT 346 (559)
Q Consensus 300 ---------------------~~---------~~~~~~~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~ 346 (559)
++ .+...+.+. .++..|.++++..++. ...-||.-|+.++...++..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 11 112233332 4788899999987776 66779999999999999988
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
..+.+.|+=+.++.+++|+ +++||-+|..++..+.
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 8888999999999999999 9999999998887664
No 98
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0017 Score=67.76 Aligned_cols=328 Identities=16% Similarity=0.141 Sum_probs=171.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCH
Q 042204 150 FLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL 229 (559)
Q Consensus 150 lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l 229 (559)
=|++++ +-+|-..++.|+.+-. ++ ++ ...+|.+...|.+.+..||++|+.|+..|-.... .++. ++-
T Consensus 107 DLQHPN-EyiRG~TLRFLckLkE--~E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--Dap 173 (948)
T KOG1058|consen 107 DLQHPN-EYIRGSTLRFLCKLKE--PE----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--DAP 173 (948)
T ss_pred hccCch-HhhcchhhhhhhhcCc--HH----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--ChH
Confidence 344555 5677777777766654 22 22 2567888889999999999999999999864321 1221 123
Q ss_pred HHHHHHhchhhhHhHHHHHHHHHHHhhcCC------------CC----Cc--------------HhhHhchHHHHHHhhc
Q 042204 230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGM------------PR----PI--------------FEQVRPALPVLAQLVH 279 (559)
Q Consensus 230 ~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~------------~~----~~--------------~~~~~~~l~~L~~lL~ 279 (559)
.-+-..|....|+..+++|.-.|...-... +. .. .......+..+..+|.
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence 333344445667777777765444322110 00 00 0000112223333444
Q ss_pred cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHH
Q 042204 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYL 358 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L 358 (559)
+.++.++-.|..+|..++..+. .... ....++.++.. ++..+..-.+.-|..+...+.. +++ |.+--+
T Consensus 254 stssaV~fEaa~tlv~lS~~p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~----il~-~l~mDv 322 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLVTLSNDPT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK----ILQ-GLIMDV 322 (948)
T ss_pred cCCchhhhhhcceEEEccCCHH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----HHH-HHHHHH
Confidence 4444444444444444432111 1111 11222222221 2222222223333333222211 111 344456
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 359 LVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR 437 (559)
Q Consensus 359 ~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 437 (559)
+.+|.++ +-++|+.+......++. .+-+.+-.++...+...--. =...+.+.|..-+.++..++.. -|+...
T Consensus 323 LrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~-Fp~~aa---- 395 (948)
T KOG1058|consen 323 LRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVK-FPEVAA---- 395 (948)
T ss_pred HHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhc-ChHHHH----
Confidence 6677777 88888888877777754 34443333332211111000 0112335667777777777764 344433
Q ss_pred cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 042204 438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517 (559)
Q Consensus 438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~i 517 (559)
.+++.|++.+.+.++.....++..+...++.-++. ....++ ..++.+..-....+++-|.||
T Consensus 396 -tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L------------r~~ii~-----~l~~~~~~irS~ki~rgalwi 457 (948)
T KOG1058|consen 396 -TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL------------RASIIE-----KLLETFPQIRSSKICRGALWI 457 (948)
T ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH------------HHHHHH-----HHHHhhhhhcccccchhHHHH
Confidence 36889999999988887777787777777553332 233333 344555556778889999999
Q ss_pred HHhhcCCCC
Q 042204 518 LETYWCGRV 526 (559)
Q Consensus 518 l~~~f~~~~ 526 (559)
+-.|...+.
T Consensus 458 ~GeYce~~~ 466 (948)
T KOG1058|consen 458 LGEYCEGLS 466 (948)
T ss_pred HHHHHhhhH
Confidence 988877654
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.16 E-value=0.00052 Score=68.77 Aligned_cols=315 Identities=14% Similarity=0.057 Sum_probs=189.8
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHHHHHhhcCCCCCcH
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWTLSNFCRGMPRPIF 264 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~L~nL~~~~~~~~~ 264 (559)
..+.+..++-+++.+++..+.+++..+..+.... ..+.+.+.--.++.-|..+. ...-+..|+..+..+..-... ..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cc
Confidence 3344444444555999999999999888776554 34445454444445553332 334466788777777765321 12
Q ss_pred hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204 265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
..-.+++..++.+..+.++..+..|+.+|+.++-.++ +.+...|++..|.+.+.++...+....+.++-.+.....
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~- 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR- 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-
Confidence 2346788889999999999999999999999997776 457889999999999887665677788888888876544
Q ss_pred HHHHHHhCCChHHHHHHhcCC------Cch--hHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhcCChhHHHH
Q 042204 345 QTQCIINCGALPYLLVLLIHS------HKK--SIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQNAEINIKNW 415 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~~ 415 (559)
..+.+...--++.+..-+.+. .+. +--+.+..++..+...-+-.+-...+. ..+..|++.|..+.+++|+.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 333344333355555544322 022 122344455555543211111111121 46888999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHH------HHcCChHHHHhcC---CCCC---hHHHHHHHHHHHHHHHhhhhhcccccccCcc
Q 042204 416 AAWAISNATSGGSHEQIKYL------VREKCIKPLCDLL---PCAN---PTIVTVCLKGLENILKVGEAEKNMDTAIGDV 483 (559)
Q Consensus 416 a~~aL~nl~~~~~~~~~~~l------~~~~~l~~L~~lL---~~~d---~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~ 483 (559)
.+..+..+..-..+...... ...|-...-.++. .... +.....-...+.+.+.
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a--------------- 324 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA--------------- 324 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH---------------
Confidence 99999999875443222111 1111110000111 0000 0000001111111110
Q ss_pred hHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHhhc
Q 042204 484 NQYAQLVEEAEGLEKIENLQSHE-NNEIHEKSVKILETYW 522 (559)
Q Consensus 484 ~~~~~~i~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~f 522 (559)
-....+.++|.++.|..+..+. ++.+..+|.-+|..++
T Consensus 325 -Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 325 -LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred -HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 1345577899999999998776 8999999999887765
No 100
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00036 Score=77.89 Aligned_cols=381 Identities=14% Similarity=0.157 Sum_probs=212.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-CchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCchh
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS-KTSED 177 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~-~~~~~ 177 (559)
....+...+.|.++..+..++.-|-.+...-. .+.+.. ....+...+.++|.+.| +-.|..|++-|+-+-. ++...
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchh
Confidence 45667778889999888877644443332211 233222 22345688999999888 7889999887765432 23334
Q ss_pred HHHHHhCCCHHHHHHhhCC---------CCHHHHH-------------HHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204 178 TKVVIDHGAVPIFVKLLAS---------PNDDIRE-------------QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ 235 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~---------~~~~v~~-------------~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l 235 (559)
++.++ ..|+.-|-. ++.++-+ ..-.-|.|+|.+-.+ .+ .+-.++++
T Consensus 897 k~~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-Pd------LVYKFM~L 964 (1702)
T KOG0915|consen 897 KKSLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PD------LVYKFMQL 964 (1702)
T ss_pred HHHHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hH------HHHHHHHH
Confidence 44333 344443322 1111111 111224444433211 11 23345555
Q ss_pred hchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHH-hccCChhHHHHHHHhCcHH
Q 042204 236 LNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYF-LSNGKNDKIQAVIEAGVCP 314 (559)
Q Consensus 236 l~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~l~ 314 (559)
-+++....-+.-|+.-+..++...-.........++|.|...=.++|..|+..-. -+++ |...+...+.... ..+++
T Consensus 965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~-sIW~~Li~D~k~~vd~y~-neIl~ 1042 (1702)
T KOG0915|consen 965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMT-SIWNALITDSKKVVDEYL-NEILD 1042 (1702)
T ss_pred hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHH-HHHHHhccChHHHHHHHH-HHHHH
Confidence 5444445555566666666665542233334455666666665667777665444 4444 4433333333333 35788
Q ss_pred HHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHH---HHHHHHHhhc--C---
Q 042204 315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHSHKKSIKNH---ACWTISKITA--G--- 384 (559)
Q Consensus 315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~---a~~~L~nl~~--~--- 384 (559)
.|+.-|.+..+++|+.+|-+|..+..+.+.. .+.+. .+...+...+++- ...||+. ++.+|+.++. .
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 8888899999999999999999999987632 12221 3344444555555 6677766 4566666654 1
Q ss_pred CHHHHHHHHHcCCHHHHHH--HhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHH-HHH
Q 042204 385 NREQIQAVIDAGLIGPLIN--LLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV-CLK 461 (559)
Q Consensus 385 ~~~~~~~li~~~~i~~Li~--lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~-~l~ 461 (559)
++..-+..++. ++|.|++ ++ +.-.++|+.++..+..++.....+...++- .+++.|.+....-.+.+... ++.
T Consensus 1120 ~~~~~~~~l~~-iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r 1195 (1702)
T KOG0915|consen 1120 NGAKGKEALDI-ILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLR 1195 (1702)
T ss_pred CcccHHHHHHH-HHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHh
Confidence 22222333332 5666654 22 456899999999999999876554444433 36778888877766665444 333
Q ss_pred HHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHH
Q 042204 462 GLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV 515 (559)
Q Consensus 462 ~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~ 515 (559)
+ .++-... -.+.....-...-.++.|..+.++-+..+-+.-.
T Consensus 1196 ~-~~~e~ea-----------lDt~R~s~aksspmmeTi~~ci~~iD~~vLeeli 1237 (1702)
T KOG0915|consen 1196 L-INIETEA-----------LDTLRASAAKSSPMMETINKCINYIDISVLEELI 1237 (1702)
T ss_pred h-hhhHHHH-----------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHH
Confidence 3 2221110 0111233333344567777777777766655443
No 101
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.12 E-value=6.1e-06 Score=54.11 Aligned_cols=41 Identities=37% Similarity=0.654 Sum_probs=38.3
Q ss_pred CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 385 NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 385 ~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
++++++.+++.|++|.|+++|.+++++++++|+|+|.|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47888999999999999999999999999999999999973
No 102
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.12 E-value=6.5e-05 Score=61.34 Aligned_cols=153 Identities=7% Similarity=0.063 Sum_probs=121.3
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHH
Q 042204 354 ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIK 433 (559)
Q Consensus 354 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 433 (559)
.+..|+.-.+...+.+.++....-|.|++ .+|.+...+.+.+++..+++.|...+..++..++.+|+|++. ++....
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 35566666665557888888888888885 578888999999999999999999999999999999999998 678889
Q ss_pred HHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 042204 434 YLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK 513 (559)
Q Consensus 434 ~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~ 513 (559)
.+.+.+.++.++..+.++...++..++.++..+. .+ .+.....+-.--+++.++.+..+..-+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~-~~------------~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLE-FG------------ERTERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc-Cc------------ccchhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999988888888877766544 22 2224555666667788888876666777777
Q ss_pred HHHHHHhhc
Q 042204 514 SVKILETYW 522 (559)
Q Consensus 514 a~~il~~~f 522 (559)
|...++++.
T Consensus 161 a~~fl~~~~ 169 (173)
T KOG4646|consen 161 ASAFLDKHV 169 (173)
T ss_pred HHHHHHhhc
Confidence 777777654
No 103
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.11 E-value=0.00013 Score=59.53 Aligned_cols=128 Identities=19% Similarity=0.181 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204 96 TRLEIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT 174 (559)
Q Consensus 96 ~~~~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 174 (559)
..++-+..+|...+ ..+.+.+.+.+..|.+++.. +-+...+.+..++..++..|..++ ..+.+.++..|+|+|. +
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d 88 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-D 88 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-C
Confidence 34577888888777 46678888888889997654 567788889999999999999999 8999999999999999 7
Q ss_pred chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC
Q 042204 175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE 227 (559)
Q Consensus 175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g 227 (559)
+.+...+++.+++|..+..++++...+...|+.++-.++......|+.+....
T Consensus 89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~ 141 (173)
T KOG4646|consen 89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPA 141 (173)
T ss_pred hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHH
Confidence 89999999999999999999999999999999999999877666777776533
No 104
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.10 E-value=0.00044 Score=69.30 Aligned_cols=324 Identities=14% Similarity=0.095 Sum_probs=196.0
Q ss_pred HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHh
Q 042204 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVA 213 (559)
Q Consensus 136 ~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~ 213 (559)
..+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|.. .+..=|++|+..+..+.
T Consensus 19 ~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 19 YDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFL 96 (371)
T ss_pred hhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHH
Confidence 33333345555555555666 7999999999999998 67778888887766666666654 45566889999988887
Q ss_pred CCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHH
Q 042204 214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWAL 293 (559)
Q Consensus 214 ~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 293 (559)
......+ -+..+++..++... .+.+..++..++.+|..++-.+ +......|++..|.+.+.++..++....+.++
T Consensus 97 ~~~~~~~--~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 97 EIKKGPK--EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred HhcCCcc--cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 5422211 12556788888888 5567789999999999999874 45555688999999988776667889999999
Q ss_pred HHhccCChhHHHHHHHhC-cHHHHHHhhCCC-------CC--cchhhHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHh
Q 042204 294 YFLSNGKNDKIQAVIEAG-VCPRLVELLGHR-------SS--SVLSPALQTIGHIVAGDDFQTQCIIN-CGALPYLLVLL 362 (559)
Q Consensus 294 ~~l~~~~~~~~~~~~~~g-~l~~L~~lL~~~-------~~--~v~~~al~~L~nl~~~~~~~~~~~~~-~g~l~~L~~lL 362 (559)
.++.+.+..+ ..+..| -++.++.-+.+. +. .....+..++..+...=+...-.-.+ ..++..|+..|
T Consensus 172 L~lLd~p~tR--~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L 249 (371)
T PF14664_consen 172 LYLLDSPRTR--KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSL 249 (371)
T ss_pred HHHhCCcchh--hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHH
Confidence 9999766543 223222 234444433322 11 12223344444333321111100111 25788899999
Q ss_pred cCCCchhHHHHHHHHHHHhhcC-CHHHHHH------HHHcCCHHHHHHHh---hcCChhHHHHHHHHHHHHhcCCCHHHH
Q 042204 363 IHSHKKSIKNHACWTISKITAG-NREQIQA------VIDAGLIGPLINLL---QNAEINIKNWAAWAISNATSGGSHEQI 432 (559)
Q Consensus 363 ~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~------li~~~~i~~Li~lL---~~~~~~v~~~a~~aL~nl~~~~~~~~~ 432 (559)
..+ .+++|+.....+..+..- .++.... +...+-+..-.++- ........... .--.++..+...-..
T Consensus 250 ~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll 327 (371)
T PF14664_consen 250 RLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLL 327 (371)
T ss_pred cCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHH
Confidence 998 888999998888888752 2211111 11111110000110 00000000000 000111111111234
Q ss_pred HHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhh
Q 042204 433 KYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 433 ~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~ 470 (559)
..+++.|+++.|+++.... |+.+...+.-.|..++..+
T Consensus 328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 4567899999999999876 8888888888898888654
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.05 E-value=0.00015 Score=79.01 Aligned_cols=258 Identities=16% Similarity=0.137 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---chhHHHHHhCCCHHH
Q 042204 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT---SEDTKVVIDHGAVPI 189 (559)
Q Consensus 113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~g~i~~ 189 (559)
.+.+..|+..|..+...-..+ ..-.-++|.++.++.++. +++|..|+.+|+.+..-- +..-..+...-++|.
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 567788888888764332111 222348999999999999 899999999999876521 111122333456788
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHHhCC------------------Cchhhhhh---hc------cCCHHHHHHHhchhhh
Q 042204 190 FVKLLAS-PNDDIREQAVWALGNVAGD------------------SPRCRDLV---LS------EEALIPLLAQLNEHAK 241 (559)
Q Consensus 190 L~~lL~~-~~~~v~~~a~~~L~nl~~~------------------~~~~r~~i---~~------~g~l~~Ll~ll~~~~~ 241 (559)
|-.++.+ ....+|-.-+.+|+.+|.. .+...... .+ ...+...+.-|..+++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 8888877 4444555444555555421 11100000 00 0012222222324555
Q ss_pred HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC
Q 042204 242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG 321 (559)
Q Consensus 242 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~ 321 (559)
+-+++..+..+.-||...- ....-.-+++.|..+|++.|+.++..-...|..++-.-.- .-++..++|.|.+-|.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSVSEYLLPLLQQGLT 666 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeHHHHHHHHHHHhcc
Confidence 6677777777777775321 0111134678899999999999998888888776633221 1245567899999999
Q ss_pred CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 322 HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
+.++.|...|++++..++...--....+. .+++....+|-++ +.-||..++..|..++.
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 99999999999999999875443333333 3566777788899 99999999999988765
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.02 E-value=8e-05 Score=70.15 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=119.0
Q ss_pred hcCCCHHHHHHHHHHHHHhccCC-CCchHHHHHh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 042204 108 VWSDDNNLQLEATTKFRKLLSIE-RSPPIEEVIQ--SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH 184 (559)
Q Consensus 108 L~s~~~~~~~~a~~~l~~lls~~-~~~~~~~ii~--~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~ 184 (559)
-.+.+++.+.+|+..|+.++.+. .......+.+ ..+++.+...+.+.. ..+...|+.++..++..-...-...+ .
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 36789999999999999998764 1122222221 145567777777666 68999999999999885443333332 3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC--CC
Q 042204 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP--RP 262 (559)
Q Consensus 185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~--~~ 262 (559)
.++|.|+..+.++...+++.|..+|..++...+.... .+..++.....+.++.++..++..+..+....+ ..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 5789999999999999999999999999876541111 223334433477889999999888888877654 12
Q ss_pred cHh---hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHH
Q 042204 263 IFE---QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKI 304 (559)
Q Consensus 263 ~~~---~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~ 304 (559)
... ....+++.+..++.+.+++|+..|-.++..+....++..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 111 235688899999999999999999999988865544443
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.0045 Score=66.38 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.+++.+.+.|.+++...-..+...... .| ...+. .++.+.+=+++++ +.+|..|++.++.+-. ++..
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~--~P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~ 125 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKL--KP-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELL 125 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CH-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHH
Confidence 3578888888888888888888888887654 22 23322 5788888889999 9999999999988765 2222
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..+++++.+++.++++.||..|+.|+.++-.-++ +.+.+.|.+..+..++ .+.++.+.++|+.+|..+...
T Consensus 126 -----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 126 -----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 2467899999999999999999999999975543 4566667666666666 788999999999999998776
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.01 E-value=0.0004 Score=75.85 Aligned_cols=292 Identities=16% Similarity=0.107 Sum_probs=181.1
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC----CC
Q 042204 187 VPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM----PR 261 (559)
Q Consensus 187 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~----~~ 261 (559)
++.+...+.+ ...+.+..|+..|..++..... ...-..+++.++.++ .++...++..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4555555554 4566777888888888743221 111123578888888 7778889999998888776433 22
Q ss_pred CcHhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 262 PIFEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 262 ~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
......+-++|.|..++.+ ....++..-+.+|..|+... -.+.+.+.-.+...++..++.+ +....-
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~~~- 567 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPEQN- 567 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------cccccc-
Confidence 3334457788999999987 45556666677777776322 2233322223333334444433 111100
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHH
Q 042204 341 GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWA 419 (559)
Q Consensus 341 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~a 419 (559)
++ ...+.+.+ ++-.....+|..+ ++-||..-...|.-+|.. ..+. -+.=+++.|+..|.+.|+.+|..-...
T Consensus 568 ~~-~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 568 YN-TELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred cc-hHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhh
Confidence 11 12222222 4445667777777 778888777777777651 0110 112268999999999999999877766
Q ss_pred HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHH
Q 042204 420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKI 499 (559)
Q Consensus 420 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l 499 (559)
|.-++..-.... ++..+++.|.+-|.+..+.|+..|+.+|..+++.+--.+.. +. ..++.+
T Consensus 641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~---------v~------~i~~~v 701 (1431)
T KOG1240|consen 641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA---------VK------DILQDV 701 (1431)
T ss_pred ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH---------HH------HHHHhh
Confidence 665543211111 34457888888899999999999999999999776432211 12 223555
Q ss_pred HHHhcCCCHHHHHHHHHHHHh
Q 042204 500 ENLQSHENNEIHEKSVKILET 520 (559)
Q Consensus 500 ~~L~~~~~~~v~~~a~~il~~ 520 (559)
.-|.-|+|.=|+..+..+|-.
T Consensus 702 ~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 702 LPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred hhheeCchHHHHHHHHHHHHH
Confidence 677889999999988877654
No 109
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.99 E-value=0.0016 Score=67.36 Aligned_cols=264 Identities=15% Similarity=0.148 Sum_probs=173.5
Q ss_pred HHHHHhccCCCCchHHHHHhcCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHH
Q 042204 121 TKFRKLLSIERSPPIEEVIQSGVVPRFVEFL---------MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFV 191 (559)
Q Consensus 121 ~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL---------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 191 (559)
..|+- ++++ ....+.+.....+..|.++- ....++.+..+|++||+|+...++..|+.+++.|..+.++
T Consensus 3 ~~LRi-LsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 3 ETLRI-LSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHH-HccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 34443 4443 44566666666677776665 3333489999999999999999999999999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHHHHHhCCCchhhhhhh-ccCCHHHHHHHhchh----------------hhHhHHHHHH
Q 042204 192 KLLASP-----NDDIREQAVWALGNVAGDSPRCRDLVL-SEEALIPLLAQLNEH----------------AKLSMLRTAT 249 (559)
Q Consensus 192 ~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~l~~Ll~ll~~~----------------~~~~~~~~a~ 249 (559)
..|+.. +.++.-...+.|.-++...+..+..+. +.+++..++..+... .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999875 778888888888888777777665554 446666666655311 2445566688
Q ss_pred HHHHHhhcCCCCCcH----hhHhchHHHHHHhh---c--cCCHhHHHHHHHHHHHhccCChhHH-----------HHHHH
Q 042204 250 WTLSNFCRGMPRPIF----EQVRPALPVLAQLV---H--SNDKEVLTDACWALYFLSNGKNDKI-----------QAVIE 309 (559)
Q Consensus 250 ~~L~nL~~~~~~~~~----~~~~~~l~~L~~lL---~--~~d~~v~~~a~~~L~~l~~~~~~~~-----------~~~~~ 309 (559)
.++.|+....+.... .....++..+..++ . .+......+++.+|.++--...... .....
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 889999877644332 22344455555552 1 1235677888888888732111110 00111
Q ss_pred hCcHHHHHHhhCC----C----CCcchhhHHHHHHHhhcCChHHHHHHHh----------------CCChHHHHHHhcCC
Q 042204 310 AGVCPRLVELLGH----R----SSSVLSPALQTIGHIVAGDDFQTQCIIN----------------CGALPYLLVLLIHS 365 (559)
Q Consensus 310 ~g~l~~L~~lL~~----~----~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~g~l~~L~~lL~~~ 365 (559)
...+..|+.+|.. . -.....+.+.+|.+++..+....+.+.. ..+-..|+.++.++
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2345666666543 1 1256788999999999887654443321 24567788888888
Q ss_pred CchhHHHHHHHHHHHhhcCCHH
Q 042204 366 HKKSIKNHACWTISKITAGNRE 387 (559)
Q Consensus 366 ~~~~v~~~a~~~L~nl~~~~~~ 387 (559)
.+.+|..++..+-.+|..+..
T Consensus 321 -~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 321 -DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred -CchHHHHHHHHHHHHHhhhHH
Confidence 688998888888888755443
No 110
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.97 E-value=0.0066 Score=62.60 Aligned_cols=345 Identities=15% Similarity=0.116 Sum_probs=196.2
Q ss_pred HHHHHHhcCCCH---HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 102 AAMVAGVWSDDN---NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 102 ~~lv~~L~s~~~---~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
|.++..|.+.+. ......+..|..+ +.+ .+..+.++ ..++..+-..++...+.+....++.+|.++.....+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~l-s~~-~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAAL-STS-PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHH-HCC-hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 556666665554 4556677777775 332 23233322 24555555555544446777888888888766432222
Q ss_pred -----HHHHhCCCHHHHHHhhCC-----C--CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---------
Q 042204 179 -----KVVIDHGAVPIFVKLLAS-----P--NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN--------- 237 (559)
Q Consensus 179 -----~~i~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~--------- 237 (559)
....+..+++.+..+.-. . +..+.+.+...+..+...-+.-++.- .+..+..++.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 233344477888776532 1 24566666666666654443322211 1333333332
Q ss_pred -hh-----hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccC--ChhHHHHHH
Q 042204 238 -EH-----AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNG--KNDKIQAVI 308 (559)
Q Consensus 238 -~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~ 308 (559)
.. .......-...+++.+-+ ..........+..++.+.. ..++..+..++.+++-+... .++..+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 00 011112222233333332 2222233456777776654 45688889999999988844 222222
Q ss_pred HhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhc----CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 309 EAGVCPRLVELL-GHRSSSVLSPALQTIGHIVA----GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 309 ~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~----~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
.++..+...+ .......+..++.++.-++. ....... ..+..|+.+|.+ +.+...|+..+.-+..
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 2334444444 33344445555555443332 2222221 345678888865 4678888888887766
Q ss_pred CCH--------HHHHHHHHcC----CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 042204 384 GNR--------EQIQAVIDAG----LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA 451 (559)
Q Consensus 384 ~~~--------~~~~~li~~~----~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 451 (559)
..+ ..++.+.... ++|.|++-....+.+.+..-..||+++..+-....... --..++|.|++-|+.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence 422 3334444333 57777777777777788999999999999754433222 2245889999999999
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 042204 452 NPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 452 d~~v~~~~l~~l~~il~~~ 470 (559)
|++++..++++|..++...
T Consensus 378 ~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEA 396 (415)
T ss_pred CHHHHHHHHHHHHHHHHcC
Confidence 9999999999999998654
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.95 E-value=0.00094 Score=62.78 Aligned_cols=236 Identities=15% Similarity=0.137 Sum_probs=144.7
Q ss_pred HHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIIN 351 (559)
Q Consensus 274 L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 351 (559)
|-++++.-++-.+--|..++.++......+.-...+...-.+++++++. ...+++...+.++.-+... ++..+.+-+
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K 232 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 3344555566677888888988885544333333344455678888876 3467888899888887764 333322211
Q ss_pred -CCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHH-HcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcC
Q 042204 352 -CGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVI-DAGLIGPLINLLQNA--EINIKNWAAWAISNATSG 426 (559)
Q Consensus 352 -~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li-~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~ 426 (559)
...+..|+.+.+..-...|-+-+|.++.|++. .....+..+. ..++.+..--++..+ |.+++...-..=..+...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 13456666666654356777888999999987 3334454444 444555554444432 555554333322222211
Q ss_pred C-----------------------------CHHHHHHHHHc--CChHHHHhcCCCCChH-HHHHHHHHHHHHHHhhhhhc
Q 042204 427 G-----------------------------SHEQIKYLVRE--KCIKPLCDLLPCANPT-IVTVCLKGLENILKVGEAEK 474 (559)
Q Consensus 427 ~-----------------------------~~~~~~~l~~~--~~l~~L~~lL~~~d~~-v~~~~l~~l~~il~~~~~~~ 474 (559)
. -..+...+.+. .++..|..+++...+. ....|+.-+..+....+
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P--- 389 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP--- 389 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---
Confidence 0 01233344432 3466777777666554 45556666666554432
Q ss_pred ccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
+....+...|+-+.|.+|.+|++++|+-.|.+.++.+.+
T Consensus 390 ----------E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 390 ----------EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred ----------hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 357788999999999999999999999999998887654
No 112
>PF05536 Neurochondrin: Neurochondrin
Probab=97.95 E-value=0.00078 Score=71.18 Aligned_cols=237 Identities=18% Similarity=0.154 Sum_probs=160.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh---hhhhhccCCHHHHHHHhchh------hhHhHHHHHHHHHHHhh
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC---RDLVLSEEALIPLLAQLNEH------AKLSMLRTATWTLSNFC 256 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~l~~Ll~ll~~~------~~~~~~~~a~~~L~nL~ 256 (559)
.+...+.+|++.+.+-|-.++..+.+++...+.. ++.+.+.=+...+-++|... +....+.-++..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4567788888888777777778888887655432 23455554566666666431 34566777889999999
Q ss_pred cCCCCCcHhhHhchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 257 RGMPRPIFEQVRPALPVLAQLVHSNDK-EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
+.........+.+.+|.|++++.+.+. ++..+++.+|..++ ..++..+.+++.|.++.|++.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 965444455667889999999987766 99999999999999 555566899999999999999987 566788899999
Q ss_pred HHhhcCChHHHHH---HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH-HHHHH----HcCCHHHHHHHhhc
Q 042204 336 GHIVAGDDFQTQC---IINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ-IQAVI----DAGLIGPLINLLQN 407 (559)
Q Consensus 336 ~nl~~~~~~~~~~---~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~li----~~~~i~~Li~lL~~ 407 (559)
.+++......... -.-..+++.+...+... ....+-+++..|+++....+.. ..... -..+...+.++|++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988754421100 00114456666666655 6667888899999887644211 11111 12245556666665
Q ss_pred C-ChhHHHHHHHHHHHHhc
Q 042204 408 A-EINIKNWAAWAISNATS 425 (559)
Q Consensus 408 ~-~~~v~~~a~~aL~nl~~ 425 (559)
. .+.-|..+......+..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5 45556666666555553
No 113
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.92 E-value=5e-05 Score=71.53 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=117.9
Q ss_pred hCCCCCcchhhHHHHHHHhhcCC--hHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 042204 320 LGHRSSSVLSPALQTIGHIVAGD--DFQTQCIINC--GALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA 395 (559)
Q Consensus 320 L~~~~~~v~~~al~~L~nl~~~~--~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~ 395 (559)
-.+.++..+..|+..|..++.+. ......+.+. .++..+...+.+. ...+.+.||.++..++......+...++.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 35678889999999999998877 2222222221 5666777777777 78899999999999987433335555444
Q ss_pred CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhc
Q 042204 396 GLIGPLINLLQNAEINIKNWAAWAISNATSGGS-HEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEK 474 (559)
Q Consensus 396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~ 474 (559)
++|.|++.+.++...++..|..+|..++.... .... .+..+.....++++.++..++..+..++.......
T Consensus 95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 78999999999989999999999999998754 1221 15566677899999999999999999886544111
Q ss_pred ccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
.. .. ....+ ....+.|..+..+.+++|++.|...+..|+.
T Consensus 167 ~~------l~-~~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 167 SV------LQ-KSAFL--KQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp GG------G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hh------hc-ccchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 00 00 01111 2235788889999999999999888887754
No 114
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0042 Score=69.83 Aligned_cols=343 Identities=16% Similarity=0.156 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH
Q 042204 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK 192 (559)
Q Consensus 113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~ 192 (559)
+..+.-|+.-|..++.... +..+. .-.-+||+|.+.=-+++ +.+|..-..+...+..+.....+... ..+++-|+.
T Consensus 971 wnSk~GaAfGf~~i~~~a~-~kl~p-~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAG-EKLEP-YLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHHH-Hhhhh-HHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHH
Confidence 4555567777777665431 11111 11237888888866777 89988777777777774333333333 467788888
Q ss_pred hhCCCCHHHHHHHHHHHHHHhCCCch--hhhhhhccCCHHHHHHHhchhhhHhHHHH---HHHHHHHhhcCC-----CCC
Q 042204 193 LLASPNDDIREQAVWALGNVAGDSPR--CRDLVLSEEALIPLLAQLNEHAKLSMLRT---ATWTLSNFCRGM-----PRP 262 (559)
Q Consensus 193 lL~~~~~~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~---a~~~L~nL~~~~-----~~~ 262 (559)
-|.+....+|+.++.||..+....+. ..+.+.+ ....+.+.+ ++-...++.. ++.+|+.+|-.. +..
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 88889999999999999999866443 2222221 233334444 4445556655 556666666433 222
Q ss_pred cHhhHhchHHHHHH-hhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh-hHHHH------
Q 042204 263 IFEQVRPALPVLAQ-LVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS-PALQT------ 334 (559)
Q Consensus 263 ~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~-~al~~------ 334 (559)
.......++|.|+. -+-++-++++..++.++..|+...+....... ..++|.|+...+.-++.+.. -++++
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence 23334555565542 11256689999999999999977765433222 24667777766655544332 23332
Q ss_pred ----HH-HhhcCChH--HHHHHH-------hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHH
Q 042204 335 ----IG-HIVAGDDF--QTQCII-------NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGP 400 (559)
Q Consensus 335 ----L~-nl~~~~~~--~~~~~~-------~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~ 400 (559)
+. +++.+++- .+...+ -...+|.+.++++..-.-..|..++..++-++..-....... ...++..
T Consensus 1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRA 1281 (1702)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHH
Confidence 21 11111110 000000 113456666666544333445555555555543100000000 1124556
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 401 LINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 401 Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
++..+++.+..+++.-..|.+.++....+.+...+++ ..+..++...++. ...++..+.+|...
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es~-~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDESL-KSISCATISNIANY 1345 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCCc-cchhHHHHHHHHHh
Confidence 6666677889999999999999999888878777554 2344444433331 14444444444433
No 115
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=2.8e-05 Score=60.98 Aligned_cols=87 Identities=29% Similarity=0.465 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 144 VPRFVEFL-MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 144 v~~Lv~lL-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
||.|++.| ++++ +.+|..|+++|+.+.. + .+++.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 58899999 6666 9999999999995533 1 35899999999999999999999999883
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~ 253 (559)
....++.|...+.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12257889998866666677888888774
No 116
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=0.0018 Score=69.86 Aligned_cols=377 Identities=13% Similarity=0.080 Sum_probs=224.8
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP 188 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~ 188 (559)
+..++..+..++..+.++.+.- .......+++|.+.++..++. ..+|+.|...+.++..-....- -+.....+
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~ 319 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSLTE 319 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhhhH
Confidence 3445566666666666654321 225556677788888777766 5788877777777765221111 22234567
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC--cHhh
Q 042204 189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP--IFEQ 266 (559)
Q Consensus 189 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~ 266 (559)
.+++...+++..++.........+...-.. ......-+++...++ .+...+.+..+..-...++...+.. ....
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~ 395 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPNIP 395 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccccc
Confidence 777777777777766655555544321111 111112345555555 3444444444443344444333211 1122
Q ss_pred HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH
Q 042204 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT 346 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 346 (559)
...++|.+-.+..+.+..++...+..+..+....+ ....+ ....|.+...+++..+.|+....+.+..+-..++...
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence 34557888888888888888887777776653333 11111 1356777778888888888888877766655555433
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
........++.+..+-... ...++.+..+.+-.++.... ..+++...-+.+...+.+....+++.|+..+..++..
T Consensus 473 ~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~ 548 (759)
T KOG0211|consen 473 ISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVET 548 (759)
T ss_pred chhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Confidence 3444456677777777666 67888888888877764211 2333333444444555666778999998888887753
Q ss_pred CCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC
Q 042204 427 GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE 506 (559)
Q Consensus 427 ~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~ 506 (559)
-..+. .....++.+......++-..+..++.++..+..... ..+.....++-+..+..++
T Consensus 549 ~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g----------------~ei~~~~Llp~~~~l~~D~ 608 (759)
T KOG0211|consen 549 FGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG----------------QEITCEDLLPVFLDLVKDP 608 (759)
T ss_pred hCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc----------------cHHHHHHHhHHHHHhccCC
Confidence 22111 112246666666656567778888888886664422 1233334468888899999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 042204 507 NNEIHEKSVKILETYWC 523 (559)
Q Consensus 507 ~~~v~~~a~~il~~~f~ 523 (559)
.++|+-.+.+.+..+-.
T Consensus 609 vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 609 VANVRINVAKHLPKILK 625 (759)
T ss_pred chhhhhhHHHHHHHHHh
Confidence 99999988888877644
No 117
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.90 E-value=2.7e-05 Score=54.88 Aligned_cols=55 Identities=29% Similarity=0.596 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 368 KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
+.+|..|+|+|++++...++..+..... +++.|+.+|.+++++||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999988778877776554 999999999999999999999999875
No 118
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0052 Score=63.86 Aligned_cols=297 Identities=12% Similarity=0.111 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.+..+.+-|.|.|+..+..|+.++.++-+. +..+.+.. =+| ++|-+++ .+-++..|+-||..+-..+++.
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl- 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL- 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc-
Confidence 455666777888999999999999997543 23332221 233 5555544 3578899999999998866543
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-----hh-----------hhH
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-----EH-----------AKL 242 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-----~~-----------~~~ 242 (559)
+-..+-...++++|.+.+-.+...+...+..|+...|+... +.++.-+..|. .. +.+
T Consensus 183 --~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 183 --VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred --cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence 22235678889999988888877788888888766655321 12222222221 01 112
Q ss_pred hHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc----CC---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHH
Q 042204 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS----ND---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPR 315 (559)
Q Consensus 243 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~----~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 315 (559)
=+...++..|.++-.............++..++...+. .+ ......++.-..+++.+-+..-+.+.. .+..
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~ 333 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQ 333 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHH
Confidence 23344445554441111111122223333333333331 11 112222222223333222222233333 4788
Q ss_pred HHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 042204 316 LVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA 395 (559)
Q Consensus 316 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~ 395 (559)
|.++|.+.+..+|.-|+..+..+++.... .+.+..+ .+.++..|+...+..+|+.|+..|..+|.. ++.+.
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~---- 404 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ---- 404 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH----
Confidence 99999999999999999999999987543 3444443 778888898554999999999999999853 22232
Q ss_pred CCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 396 GLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
++..|++.|.+.|+.+|++.+.=+.-++
T Consensus 405 -IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 405 -IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred -HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4556788888888888776655444444
No 119
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0044 Score=57.09 Aligned_cols=245 Identities=18% Similarity=0.241 Sum_probs=150.8
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP 188 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~ 188 (559)
.+....-++.|+..|+++.... .+..+.+...+++ .-++.+.+.+|+.... ..+++
T Consensus 15 ~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~ 70 (289)
T KOG0567|consen 15 KSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVP 70 (289)
T ss_pred ccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhH
Confidence 3445567888999998876532 2555666665555 5777888888887766 24788
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-------
Q 042204 189 IFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM------- 259 (559)
Q Consensus 189 ~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~------- 259 (559)
.|+..|.. ..+-+|..|..+|+++. + +. .++.+-+.. +++-..+...+-.++..+-...
T Consensus 71 ~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 71 VLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred HHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccc
Confidence 88887765 56778888999998885 2 22 123333333 4555556665555555543221
Q ss_pred --------CCCcHhhHhchHHHHHHhhc-cCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 042204 260 --------PRPIFEQVRPALPVLAQLVH-SNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329 (559)
Q Consensus 260 --------~~~~~~~~~~~l~~L~~lL~-~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~ 329 (559)
|.+. ....-+..+-..|. .+.+.. +..+...|+|+- .++. +..|++-+..++.-.|.
T Consensus 139 ~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 139 SSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGLADDSALFRH 205 (289)
T ss_pred cCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhcccchHHHHH
Confidence 1111 11122333333333 222332 334555555543 2222 45666667777777899
Q ss_pred hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC
Q 042204 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA 408 (559)
Q Consensus 330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~ 408 (559)
.+..++|.+-+. -.++.|.+.|. ..+.+-+|.+|+.+|+.|+ +++ .++.|.+.+.++
T Consensus 206 EvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~---------~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 206 EVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA--DED---------CVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHH---------HHHHHHHHcCCc
Confidence 999999987542 23566666663 3447899999999999995 344 466677778888
Q ss_pred ChhHHHHHHHHHHHHh
Q 042204 409 EINIKNWAAWAISNAT 424 (559)
Q Consensus 409 ~~~v~~~a~~aL~nl~ 424 (559)
++-+++.+..+|.-+-
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888777776443
No 120
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0021 Score=65.11 Aligned_cols=287 Identities=14% Similarity=0.083 Sum_probs=146.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223 (559)
Q Consensus 144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 223 (559)
.|.|-..|++.- ..++.+++++++.++..+ .....++ ..+..|-.+|.++....|-.|++.|..++...|.. +
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v 338 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V 338 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence 455556666655 689999999999988743 1222222 35678888999999999999999999999877652 1
Q ss_pred hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH
Q 042204 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303 (559)
Q Consensus 224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~ 303 (559)
..++ +.+-.++ .+.+.. .+.+++..|............-..+|.+++=+.++-.-+..+|++.|+.+... .
T Consensus 339 ~vcN--~evEsLI-sd~Nr~---IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~---k 409 (898)
T COG5240 339 SVCN--KEVESLI-SDENRT---ISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS---K 409 (898)
T ss_pred eecC--hhHHHHh-hccccc---chHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH---H
Confidence 1111 1122222 333322 34455555555443333333333344444333334344556666666655422 1
Q ss_pred HHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 304 IQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 304 ~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
... .+..|...|. .+.-+.+..+..+|..+....++..+ .+++.|...+...+-+ +-+..+|+-+.
T Consensus 410 ~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~---~I~vrIL~iLG 476 (898)
T COG5240 410 KLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYH---QITVRILGILG 476 (898)
T ss_pred HHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchh---HHHHHHHHHhc
Confidence 111 1233333332 23344556666666666665544333 2344455555433222 22333333333
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHH
Q 042204 383 AGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG 462 (559)
Q Consensus 383 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~ 462 (559)
...|..-. -...+..+.+-+--++.-+|..|+.||+.++.+.+... ....+...|-.++++.|.+++..|.-+
T Consensus 477 ~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrAsf~ 549 (898)
T COG5240 477 REGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRASFL 549 (898)
T ss_pred ccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 21000000 00122333333333455666777777766655432111 112234455666677777777776666
Q ss_pred HHHH
Q 042204 463 LENI 466 (559)
Q Consensus 463 l~~i 466 (559)
+.++
T Consensus 550 l~~~ 553 (898)
T COG5240 550 LRNM 553 (898)
T ss_pred HHhh
Confidence 6554
No 121
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.014 Score=63.13 Aligned_cols=284 Identities=17% Similarity=0.151 Sum_probs=172.6
Q ss_pred CcHHHHHHhhcC-------CCCHHHHHHHHHHHHHHhcCC--chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 042204 142 GVVPRFVEFLMR-------EDYPQLQYEAAWALTNIASKT--SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNV 212 (559)
Q Consensus 142 g~v~~Lv~lL~~-------~~~~~~~~~a~~~L~nl~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 212 (559)
|+++.++..|.+ .+++.-+..|+++++++++-- ...-+..++.=+++.+...++++.-.+|..|+|.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 456666777762 123778899999999988521 11122334444567777788999999999999999999
Q ss_pred hCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC---cHhhHhchHHHHHHhhccCCHhHHHHH
Q 042204 213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP---IFEQVRPALPVLAQLVHSNDKEVLTDA 289 (559)
Q Consensus 213 ~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~a 289 (559)
+..+-. +...-..++....+.|.++.+..++..|+.+|..+..+.+.. ....+.+.++.|+.+.+.-+.+.+..+
T Consensus 490 ~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 843222 222222356666777766888899999999999998887433 233456667777777776666666555
Q ss_pred HHHHH-HhccCChhHHHHHHHhCcHHHHHHhhCC---CCCcchhh---HHHHHHHhhc---CChHHH--HHHHhCCChHH
Q 042204 290 CWALY-FLSNGKNDKIQAVIEAGVCPRLVELLGH---RSSSVLSP---ALQTIGHIVA---GDDFQT--QCIINCGALPY 357 (559)
Q Consensus 290 ~~~L~-~l~~~~~~~~~~~~~~g~l~~L~~lL~~---~~~~v~~~---al~~L~nl~~---~~~~~~--~~~~~~g~l~~ 357 (559)
+..+. ..++.-......+.. .+.....+++.. .++..-.. |..+|..+.+ .-+... -.-++.-+++.
T Consensus 568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55442 222111111111111 234445555553 22333333 3333333322 111111 11233456777
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH
Q 042204 358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ 431 (559)
Q Consensus 358 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 431 (559)
+-.+|++. -.++-.+++..+.+++...++.--.+. ++++.+.+.+.....+--....-+|.|+...|.+..
T Consensus 647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~ 717 (1010)
T KOG1991|consen 647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSL 717 (1010)
T ss_pred HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhh
Confidence 77788877 788888999888888764332212222 267788888888878888899999999988876643
No 122
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.81 E-value=0.00013 Score=57.67 Aligned_cols=95 Identities=15% Similarity=0.324 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204 370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449 (559)
Q Consensus 370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 449 (559)
.|+.+.++|+.++.+-+..+...++. ++++++..+.+.|.+||..|+.+|.|++.....+...++-+ +++.|+.++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence 36778888888876655556666665 89999999999999999999999999998755555454443 7899999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 042204 450 CANPTIVTVCLKGLENILK 468 (559)
Q Consensus 450 ~~d~~v~~~~l~~l~~il~ 468 (559)
+.|+.|+..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999976655 67777764
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.79 E-value=7.3e-05 Score=58.53 Aligned_cols=86 Identities=33% Similarity=0.495 Sum_probs=69.9
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 101 FAAMVAGV-WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 101 l~~lv~~L-~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
||.|++.| +++++.++..++..|.++-. + .++|.|++++++++ +.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~--------~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----P--------EAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----H--------HHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----H--------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 57889988 88999999999999986411 1 35899999998887 9999999999998843
Q ss_pred HHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHH
Q 042204 180 VVIDHGAVPIFVKLLASP-NDDIREQAVWALG 210 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~ 210 (559)
..+++.|.+++.++ +..++..|+++|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24789999988774 5667999999885
No 124
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.044 Score=55.95 Aligned_cols=290 Identities=12% Similarity=0.175 Sum_probs=171.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ 266 (559)
Q Consensus 187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 266 (559)
.|.|-..|++.-..+.-.+++++..++...-. +...+ ..+..|-.+| ..+....+-.|+.+|..|+...|...
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv--- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV--- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee---
Confidence 35666667777777888888888887754311 11111 1233444444 66777888889999999998765332
Q ss_pred HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH
Q 042204 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT 346 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 346 (559)
.-+-+-+-.++.+.+..+..+|+.+|.. .+.++.+..++.. ++..+.=++++=..+...|++.|++..... .
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k---~ 410 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLLFPSK---K 410 (898)
T ss_pred -eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhhCcHH---H
Confidence 2223445566777777888888777654 3455555555432 444444444443445666777776654321 1
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
. ..+..|...|......+.++.+..+++.+....|+.... +++.|+..+.+.++ .+.++..|+-+-..
T Consensus 411 ~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~I~vrIL~iLG~E 478 (898)
T COG5240 411 L-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQITVRILGILGRE 478 (898)
T ss_pred H-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hHHHHHHHHHhccc
Confidence 2 234566666544437788999999999988776665444 45567777765433 34455555555443
Q ss_pred CCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC
Q 042204 427 GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE 506 (559)
Q Consensus 427 ~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~ 506 (559)
+...... ...+..+.+-+--++.-++..|+.+|..+.-..+. . ...+-+ ...+..+.++.
T Consensus 479 gP~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-~----------~~~~sv-----~~~lkRclnD~ 538 (898)
T COG5240 479 GPRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISD-V----------VSPQSV-----ENALKRCLNDQ 538 (898)
T ss_pred CCCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc-c----------ccHHHH-----HHHHHHHhhcc
Confidence 3110000 01233333333345677888888888775422111 0 012222 35677889999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 042204 507 NNEIHEKSVKILETYWC 523 (559)
Q Consensus 507 ~~~v~~~a~~il~~~f~ 523 (559)
+++|+++|.-.++..-.
T Consensus 539 DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 539 DDEVRDRASFLLRNMRL 555 (898)
T ss_pred cHHHHHHHHHHHHhhhh
Confidence 99999999999886643
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.03 Score=60.33 Aligned_cols=168 Identities=20% Similarity=0.199 Sum_probs=124.4
Q ss_pred hcCCCHHHHHHHHHHH-HHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC
Q 042204 108 VWSDDNNLQLEATTKF-RKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGA 186 (559)
Q Consensus 108 L~s~~~~~~~~a~~~l-~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~ 186 (559)
+.|++...+..|++.+ +.|..++ + . ..++|.+++...+.+ .+++...-.-|-+++...|+..-. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--D-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--C-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 5666677777777544 4554443 2 1 125788888888666 899999999999999977743322 4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ 266 (559)
Q Consensus 187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 266 (559)
++.+.+=++++++.+|..|+++++.+- + ++ +-..+++++.+.+ .+++..++++|+.++..+-+-++ ....
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~-~-~e-----l~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~--~l~~ 163 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR-V-KE-----LLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK--DLYH 163 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-h-HH-----HHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH--hhhh
Confidence 678889999999999999999999872 1 11 1223577788887 77888999999999999987642 2233
Q ss_pred HhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 299 (559)
..|.+..+..++.+.||.+..+|+.+|..+-..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 355677778888899999999999999988643
No 126
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.68 E-value=5.8e-05 Score=53.14 Aligned_cols=55 Identities=35% Similarity=0.610 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNV 212 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 212 (559)
|.+|..|+|+|++++...++.... ....+++.|+.+|.++++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998866665555 4457899999999999999999999999986
No 127
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=97.68 E-value=4.4e-05 Score=60.50 Aligned_cols=75 Identities=25% Similarity=0.209 Sum_probs=43.3
Q ss_pred hhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccC-CCCC-CCchhhhhHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 47 EACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLS-FAPA-PNLNLQTRLEIFAAMVAGVWSDDNNLQLEATT 121 (559)
Q Consensus 47 ~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~ 121 (559)
.++++-+--=++.-+||+||||+|+|||++......... .... ...........+|.++..+.|+|+..|+.|+.
T Consensus 20 ~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 20 AEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhcCCCCHHHHHHhhC
Confidence 344444433356669999999999999998654432211 0000 00101223357899999999999999999975
No 128
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0052 Score=66.93 Aligned_cols=150 Identities=15% Similarity=0.229 Sum_probs=100.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH
Q 042204 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF 264 (559)
Q Consensus 185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 264 (559)
+++..|+..+++.+..++-.|+..++.++...|. .. ...++...+.++....+......+|.+|+.|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5788888889999999999999999999987763 22 22356677777655556777889999999999876 1122
Q ss_pred hhHhchHHHHHHhhccC--------CHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 265 EQVRPALPVLAQLVHSN--------DKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~--------d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
.....++|.+..-+..+ ...|+..||.+++.++.... .....++..=.-..|..-+-+++-.+|..|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 33456778877777533 35688888777777774433 2222233221222344445667777888877776
Q ss_pred HHhh
Q 042204 336 GHIV 339 (559)
Q Consensus 336 ~nl~ 339 (559)
.-.+
T Consensus 496 qE~V 499 (1133)
T KOG1943|consen 496 QENV 499 (1133)
T ss_pred HHHh
Confidence 5443
No 129
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.012 Score=58.01 Aligned_cols=223 Identities=17% Similarity=0.103 Sum_probs=156.8
Q ss_pred hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh---------hHHHHHHHhCcHHHHHHhhCCCCCcc------hhh
Q 042204 266 QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN---------DKIQAVIEAGVCPRLVELLGHRSSSV------LSP 330 (559)
Q Consensus 266 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~g~l~~L~~lL~~~~~~v------~~~ 330 (559)
..-.+++.|+.+|.+.+.+|....+..+..+++.+. ..+..+++.++++.|++-+..-+.++ ...
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 336789999999999999999999999999985421 45677888899999998877644444 345
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh---
Q 042204 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ--- 406 (559)
Q Consensus 331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~--- 406 (559)
++..+-|++.-.+.....+.+.|.+.+|+.-+... .-...+..|.-+++-+...+.+....+-.-+++..+++-+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 78889999998888888888889999998866432 14456677777777776665666666667778888887663
Q ss_pred cC------ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccccc
Q 042204 407 NA------EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAI 480 (559)
Q Consensus 407 ~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~ 480 (559)
.. +.+.-.+...+|+.+.. .++....++....++...=++.. ....+..++.+|...+...+
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~--------- 349 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE--------- 349 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC---------
Confidence 22 23556677777877776 45666666766666544434433 44556667777777663321
Q ss_pred CcchHHHHHHHHhccHHHHHHH
Q 042204 481 GDVNQYAQLVEEAEGLEKIENL 502 (559)
Q Consensus 481 ~~~~~~~~~i~~~g~l~~l~~L 502 (559)
..++|..+-+.+|+..+-.+
T Consensus 350 --gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 350 --GTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred --chHHHHHHHHHHhHHHHHHH
Confidence 22467777777777777766
No 130
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0045 Score=64.63 Aligned_cols=262 Identities=16% Similarity=0.172 Sum_probs=149.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
+...|.+.|++.+++.+++.++--|+-.+.++... .+...+-..|...+.-.-+.|..++|-+--.+.. .+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence 45566666666655667777766666555543221 1234455555555555556666666655432221 01
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHH--HhccCC
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY--FLSNGK 300 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~--~l~~~~ 300 (559)
++.-++..-...+...+.+-..--++-...+. .+++=+.+-+++.+.|+-++.....++. +...++
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 23333333323334444444332222222221 1234456667788888877776655443 333332
Q ss_pred hhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 301 NDKIQAVIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
. +++..|+.. .++.+..||..|.-+||-++..++++ ++..+.+|....++.||..|+.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 356667766 56778899999999999998877755 4677778876669999999999999
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN 452 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d 452 (559)
-.|+|+... . .+..|-.+..+...-||+-|+.++.-+....++..... -.++.+.+.+.+..+.
T Consensus 615 IaCAGtG~~--e-----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 615 IACAGTGLK--E-----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKH 678 (929)
T ss_pred hhhcCCCcH--H-----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhh
Confidence 998864331 1 22233334456666788888888887765444332222 1223444455554443
No 131
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.026 Score=52.17 Aligned_cols=224 Identities=19% Similarity=0.254 Sum_probs=147.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.+..+.+...++......+.+..|..+ . ....+|.++..|...+ .|.+|.+|+.+|+++.. +
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ~-~-----------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~--- 99 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQM-Q-----------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P--- 99 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhhh-c-----------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---
Confidence 456666666665445555666677664 2 2347899988887543 38899999999999984 2
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC----C-----------chhhhhhhccCCHHHHHHHhchhhhHh
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD----S-----------PRCRDLVLSEEALIPLLAQLNEHAKLS 243 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~----~-----------~~~r~~i~~~g~l~~Ll~ll~~~~~~~ 243 (559)
..++.+-++.+++...+++.|..++..+--. . |..+ ...+-+..+-..|.+.+.+.
T Consensus 100 ------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l 170 (289)
T KOG0567|consen 100 ------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPL 170 (289)
T ss_pred ------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhH
Confidence 4677788888888889999888888877411 1 1111 11122444444443333333
Q ss_pred H-HHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204 244 M-LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322 (559)
Q Consensus 244 ~-~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~ 322 (559)
. +..+.+.|.|+-. ...+..|.+-+..+..-.+..+..+++.|-.. -.++.|.+.|..
T Consensus 171 ~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d 229 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLD 229 (289)
T ss_pred HHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHh
Confidence 3 3345566666533 33566677777777788889999999887522 135677777655
Q ss_pred --CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 323 --RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 323 --~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
..+-||..|+.+||.|+. + ..++.|...+..+ .+-|++.+..+|..+-
T Consensus 230 ~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLE 279 (289)
T ss_pred hhcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 457799999999999875 2 2356777788777 7778888777776553
No 132
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.50 E-value=0.00028 Score=46.07 Aligned_cols=39 Identities=36% Similarity=0.773 Sum_probs=36.1
Q ss_pred chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204 175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213 (559)
Q Consensus 175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 213 (559)
++++..+++.|+++.|++++.+++++++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999999999999999999999996
No 133
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.014 Score=57.61 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCC----CC----chHHHHHhcCcHHHHHHhhcCCC-----CHHHHHHH
Q 042204 97 RLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIE----RS----PPIEEVIQSGVVPRFVEFLMRED-----YPQLQYEA 163 (559)
Q Consensus 97 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~----~~----~~~~~ii~~g~v~~Lv~lL~~~~-----~~~~~~~a 163 (559)
++..++.++..|..++.++-...+..+..+.-.+ +. ..++.+++.++++.|++.+.+-+ ...-.+.+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3578889999999999999999888888875321 11 23778889999999999887543 12345667
Q ss_pred HHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc----
Q 042204 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---- 237 (559)
Q Consensus 164 ~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---- 237 (559)
+.++-|+..-.++....+++.|.+..|+.-+.. +-..-+..|...|+-+..++...+...-..+++..+++.+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 788889999899999999999999998884433 44556677888888888777777888888888999988873
Q ss_pred hh----hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh--hHHHHHHHhC
Q 042204 238 EH----AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN--DKIQAVIEAG 311 (559)
Q Consensus 238 ~~----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g 311 (559)
++ ...++..+..-+|+.+...............++...-+++. ....+..++.+|-+...+++ .....+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 11 24567788888888777665433333445556555545544 45567788888888886666 5566677777
Q ss_pred cHHHHHHhh
Q 042204 312 VCPRLVELL 320 (559)
Q Consensus 312 ~l~~L~~lL 320 (559)
.+..++.+.
T Consensus 362 GLrtiF~~F 370 (536)
T KOG2734|consen 362 GLRTIFPLF 370 (536)
T ss_pred hHHHHHHHH
Confidence 667666654
No 134
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.12 Score=54.97 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=55.8
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 343 (559)
....+.+-.++.+....+...+..++.++.......... .+..|-.+++++...+|-.|.++|..++...+
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 456677777888889999999999999988655533222 57778888899999999999999999886544
No 135
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.45 E-value=0.086 Score=54.37 Aligned_cols=312 Identities=14% Similarity=0.104 Sum_probs=173.3
Q ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCCC----chHHHHHhcCcHHHHHHhhcCC----C--CHHHHHHHHH
Q 042204 101 FAAMVAGVWS-----DDNNLQLEATTKFRKLLSIERS----PPIEEVIQSGVVPRFVEFLMRE----D--YPQLQYEAAW 165 (559)
Q Consensus 101 l~~lv~~L~s-----~~~~~~~~a~~~l~~lls~~~~----~~~~~ii~~g~v~~Lv~lL~~~----~--~~~~~~~a~~ 165 (559)
+++++..+.. .+.+.....+..+.+++..... .......+..++|.+.+..-.. . ++.+-..+..
T Consensus 40 ~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~ 119 (415)
T PF12460_consen 40 SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSR 119 (415)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHH
Confidence 3455555442 2455666667777776654321 2234444556888888776432 1 1456666666
Q ss_pred HHHHHhcCCchhHHHHHhCCCHHHHHHhhC----------CCC--HHHHHHHHHHHHH-HhCCCchhhhhhhccCCHHHH
Q 042204 166 ALTNIASKTSEDTKVVIDHGAVPIFVKLLA----------SPN--DDIREQAVWALGN-VAGDSPRCRDLVLSEEALIPL 232 (559)
Q Consensus 166 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----------~~~--~~v~~~a~~~L~n-l~~~~~~~r~~i~~~g~l~~L 232 (559)
++..+...-+...+.-+ +..+..++- ..+ .......+..+.. +++-.+.+.-. .....+..+
T Consensus 120 l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l 194 (415)
T PF12460_consen 120 LINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSL 194 (415)
T ss_pred HHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHH
Confidence 66666664433333222 223333222 111 1122222222222 22222222100 111245666
Q ss_pred HHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCH----hHHHHHHHHHHHhccCChhHHHHH
Q 042204 233 LAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDK----EVLTDACWALYFLSNGKNDKIQAV 307 (559)
Q Consensus 233 l~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~----~v~~~a~~~L~~l~~~~~~~~~~~ 307 (559)
+.+.....+...+..++.+++.+...-+... .....+..+..-+ ...+. ....-..|...-+.-......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~--- 269 (415)
T PF12460_consen 195 LNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA--- 269 (415)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH---
Confidence 7766556667777788888887776532222 3344444444444 22233 333444455444442222121
Q ss_pred HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH--------HHHHHhC----CChHHHHHHhcCCCchhHHHHHH
Q 042204 308 IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ--------TQCIINC----GALPYLLVLLIHSHKKSIKNHAC 375 (559)
Q Consensus 308 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~--------~~~~~~~----g~l~~L~~lL~~~~~~~v~~~a~ 375 (559)
..++..|+.+|.+ +.+...|.+.++-+....+.. .+.+... .++|.|++..+.. +...|..-.
T Consensus 270 --~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL 344 (415)
T PF12460_consen 270 --TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYL 344 (415)
T ss_pred --HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHH
Confidence 1356778888877 667788888888888763321 1222222 3567777777766 555788888
Q ss_pred HHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 376 WTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 376 ~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
.+|+++..+.|..+-.---..++|.|++.|..+|.+++..++.++..+....
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8999998865544322112348999999999999999999999999999864
No 136
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.45 E-value=0.23 Score=53.76 Aligned_cols=249 Identities=13% Similarity=0.098 Sum_probs=161.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHH
Q 042204 195 ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVL 274 (559)
Q Consensus 195 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L 274 (559)
.+..|.+.-.+.|+++..+...+....... -++...++.+..+..+.++..++.+++..| ++.........++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHH
Confidence 345666666899999977654332222211 134455555555666777888888888888 3445555567788888
Q ss_pred HHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC--CCCCcchhhHHHHHHHhhcCChHHHHHHHhC
Q 042204 275 AQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG--HRSSSVLSPALQTIGHIVAGDDFQTQCIINC 352 (559)
Q Consensus 275 ~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~ 352 (559)
.++......++......+|+..+..+++. ....++.++|.++.+.. ++++.+...+..++-.++.....+ .-+..
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cchHH
Confidence 88888888999999999999999888765 45666778888777753 356666666666666665422111 12223
Q ss_pred CChHHHHHHhcCCCc----hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh-hcCChhHHHHHHHHHHHHhcCC
Q 042204 353 GALPYLLVLLIHSHK----KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL-QNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 353 g~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
..+|.|++.|..+ . ......|+-.|.-+.++++.-....+-.-.+|.+.++. .++|..+-..+-.+|..+...+
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 5789999999876 4 55666777778777775444343333333788888876 4567788888889998888774
Q ss_pred CHHHHHHHHHcC-----ChHHHHhcCCCC
Q 042204 428 SHEQIKYLVREK-----CIKPLCDLLPCA 451 (559)
Q Consensus 428 ~~~~~~~l~~~~-----~l~~L~~lL~~~ 451 (559)
.++....=.+.| ++..+.+||+-.
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~ 720 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPE 720 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCc
Confidence 333222222222 245556666543
No 137
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.18 Score=56.12 Aligned_cols=230 Identities=13% Similarity=0.050 Sum_probs=138.3
Q ss_pred HHHHhchhhhHhHHHHHHHHHHHhhcCCCCC--cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRP--IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 309 (559)
+.....++.+..+++.+...|..++...+.. ....+..+...|..-+++.+...+...+.+|..|.+..+.....++.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3344445557788999999999999873211 12223455566666677778888999999998888665522233443
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCC------ChHHHHHHh----cCCCchhHHHHHHHHHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCG------ALPYLLVLL----IHSHKKSIKNHACWTIS 379 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g------~l~~L~~lL----~~~~~~~v~~~a~~~L~ 379 (559)
.-+.+.++. +++.+..-+..|..+|-.|.. ++...+.| .+..++.++ -.. ...+......++.
T Consensus 738 k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 738 KLIPEVILS-LKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAIT 810 (1176)
T ss_pred HHHHHHHHh-cccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHH
Confidence 333344444 477777788888888777763 11111111 333333333 333 3333322234444
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC 459 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~ 459 (559)
.+.......+..-.-.+++..+.-.|.+..+++++.|+..+.-++..-+....... ...+++.+..+++.....++..+
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHH
Confidence 44321111111111123455566677889999999999999999887554444332 23477888888887788888888
Q ss_pred HHHHHHHHHh
Q 042204 460 LKGLENILKV 469 (559)
Q Consensus 460 l~~l~~il~~ 469 (559)
...|..++..
T Consensus 890 r~LlekLirk 899 (1176)
T KOG1248|consen 890 RLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 138
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.16 Score=55.87 Aligned_cols=339 Identities=14% Similarity=0.136 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..+..+..++++.|..++-.|++.+.++.+.....-+++ ++...+.++...+.+..=..|+-+|+.++...----
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 467788888999999999999999999988743222444 445555555543334556688889999987432211
Q ss_pred HHHHhCCCHHHHHHhhCC--------CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh----chhhhHhHHH
Q 042204 179 KVVIDHGAVPIFVKLLAS--------PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL----NEHAKLSMLR 246 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll----~~~~~~~~~~ 246 (559)
..+. .++|.+++-|.- ....||+.|+.+++.++...... .+ .+++..|...| ..+.+...++
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhH
Confidence 1111 245666655531 34678999999888887543221 10 11223233222 2566788899
Q ss_pred HHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh-hCC
Q 042204 247 TATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL-LGH 322 (559)
Q Consensus 247 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l-L~~ 322 (559)
.|..++-......+.. ..++ .++.+.| ...+.++...++.-....+...+.+ +..++.. +.|
T Consensus 490 AAsAAlqE~VGR~~n~-----p~Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~H 555 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNF-----PHGI----SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCH 555 (1133)
T ss_pred HHHHHHHHHhccCCCC-----CCch----hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhccccc
Confidence 9888887766442111 1111 1222222 2223333333332222222222222 2333332 556
Q ss_pred CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH---HHHHHHH---cC
Q 042204 323 RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE---QIQAVID---AG 396 (559)
Q Consensus 323 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~li~---~~ 396 (559)
=+..+++.+.++|.+++...++ ......++.+++...+. +...|.....+.+.++.+... ....+.+ ++
T Consensus 556 Wd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 6788999999999998765442 33446788888888777 777777666666655432110 1111111 11
Q ss_pred ---CHHHHHHH-hhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 397 ---LIGPLINL-LQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 397 ---~i~~Li~l-L~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
+++.+... +..+ ..-.+...+..+.++.... .......+..+.-..+.+.+..++ .++..+.+++..+...
T Consensus 631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 23333332 2222 1344555666666666543 222223333334444555554444 6677777777766543
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.00061 Score=44.40 Aligned_cols=39 Identities=41% Similarity=0.693 Sum_probs=35.1
Q ss_pred chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 133 PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 133 ~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
+.+..+++.|+++.|++++.+++ ++++..|+|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC
Confidence 46778889999999999999877 8999999999999973
No 140
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0018 Score=64.22 Aligned_cols=295 Identities=16% Similarity=0.133 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh-----CCCchhhhhhhccCCHH--
Q 042204 158 QLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA-----GDSPRCRDLVLSEEALI-- 230 (559)
Q Consensus 158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~r~~i~~~g~l~-- 230 (559)
.+|.++..+|..++..-.-.+...+ .....+...+....+.++..+..++-.+- .+.|...+.-...+.+-
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 5788888888888874332232222 23344445566788999999988887764 23333211111111111
Q ss_pred ----HHHHHhchhhhHhHHHHHHHHHHHhhcCC----CCCcHhhHhchHHHHH-HhhccCCHhHHHHHHHHHHHhccCCh
Q 042204 231 ----PLLAQLNEHAKLSMLRTATWTLSNFCRGM----PRPIFEQVRPALPVLA-QLVHSNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 231 ----~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~----~~~~~~~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
+.-....++.....+..+|-+++++.... |+... ...+.+. ..-.+.+.-+...|++++.-+.-+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ----TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch----hhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 11112223334556777888888887543 22111 1111111 11122334467788888877775555
Q ss_pred hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----C---hHHHHHHHhCCChHHHHHHh--cCCCchhHHH
Q 042204 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG----D---DFQTQCIINCGALPYLLVLL--IHSHKKSIKN 372 (559)
Q Consensus 302 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~---~~~~~~~~~~g~l~~L~~lL--~~~~~~~v~~ 372 (559)
-+.....-......+...+.+..-..|..+.|++|||... . +.+...+... .+..+...- .+..+.+|+.
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~ 502 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKS 502 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhh
Confidence 4444444444566677777777778899999999999751 1 1222222221 122222221 1222678999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHcCC-------HHHHHHH-hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q 042204 373 HACWTISKITAGNREQIQAVIDAGL-------IGPLINL-LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPL 444 (559)
Q Consensus 373 ~a~~~L~nl~~~~~~~~~~li~~~~-------i~~Li~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 444 (559)
.|..+|+|+.. ..+.+.+.+. +..++.. .-....+||=+||++++|+..+..-.....=.-..+.+.|
T Consensus 503 navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L 578 (728)
T KOG4535|consen 503 NAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNAL 578 (728)
T ss_pred HHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHH
Confidence 99999999853 2333333221 1111111 1234678999999999999986421110000011245667
Q ss_pred HhcCCC-CChHHHHHHHHHH
Q 042204 445 CDLLPC-ANPTIVTVCLKGL 463 (559)
Q Consensus 445 ~~lL~~-~d~~v~~~~l~~l 463 (559)
+.++.+ .+-+|+.++..+|
T Consensus 579 ~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 579 TSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred HHHHHHhccceEeehhhhhh
Confidence 776633 4445555554444
No 141
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.28 E-value=0.12 Score=55.68 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=177.3
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHH
Q 042204 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPI 189 (559)
Q Consensus 110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~ 189 (559)
+.-+.....+.+.+.+..+.. .....+. .-++...+..+.-+..+-++..|+++++..++ .+.... ...+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence 344555556777777654431 1111111 11334445555544446788888888887774 222211 12367888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHh
Q 042204 190 FVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-EHAKLSMLRTATWTLSNFCRGMPRPIFEQVR 268 (559)
Q Consensus 190 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 268 (559)
|.++....+.++--..+.+|+..+..+|+.... .+.-+.+.++.++. .+.|+.+...+--++-.++... .....+..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 888888888999999999999999888875433 23344555555543 4456767666767777776632 12223446
Q ss_pred chHHHHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCCh
Q 042204 269 PALPVLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 269 ~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~ 343 (559)
..+|.++..+..++ .....-++..|..+.++.+.-....+-.-++|.+.++.-| ++......+-.||..+...+.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999998665 5556666666666665443322233333467888887655 556678888889988888776
Q ss_pred HHHHHHHhCCCh------HHHHHHhcCCCchhHHHHHHHHHHHh----hcCCHHHHHHHHHcCCHHHHHHHh-hcCChhH
Q 042204 344 FQTQCIINCGAL------PYLLVLLIHSHKKSIKNHACWTISKI----TAGNREQIQAVIDAGLIGPLINLL-QNAEINI 412 (559)
Q Consensus 344 ~~~~~~~~~g~l------~~L~~lL~~~~~~~v~~~a~~~L~nl----~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v 412 (559)
++...--+.++. ..+..+|+ ++.-..++..++.+ +.+-+..+...++. ++...+.-| +.....+
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsv 767 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSV 767 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHH
Confidence 665444333333 33334443 33333333333333 32222222222222 333334333 3456788
Q ss_pred HHHHHHHHHHHhcCC
Q 042204 413 KNWAAWAISNATSGG 427 (559)
Q Consensus 413 ~~~a~~aL~nl~~~~ 427 (559)
....+.++++++...
T Consensus 768 iQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 768 IQSLIMVFAHLVHTD 782 (1005)
T ss_pred HHHHHHHHHHHhhCC
Confidence 888888899888763
No 142
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.28 E-value=0.057 Score=55.96 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=144.6
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-----DYPQLQYEAAWALTNIASKTSEDTKVVID 183 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 183 (559)
.+.++....+|+++|.+++-.. ...++.+.+.|..+.+++.|+.. + .++.+-..++|.-++...++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4567899999999999998764 66678888999999999999876 4 799999999999999888888877776
Q ss_pred C-CCHHHHHHhhCC-----------------CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh------
Q 042204 184 H-GAVPIFVKLLAS-----------------PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH------ 239 (559)
Q Consensus 184 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~------ 239 (559)
. +++..+...|.. .+......++..+.|+..+.+.... -.....++.++.++..-
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 5 677777665532 1344566788899999866554322 01233455555554322
Q ss_pred --hhHhHHHHHHHHHHHhhcCCCC--------C----cHhhHhchHHHHHHhhc----cC----CHhHHHHHHHHHHHhc
Q 042204 240 --AKLSMLRTATWTLSNFCRGMPR--------P----IFEQVRPALPVLAQLVH----SN----DKEVLTDACWALYFLS 297 (559)
Q Consensus 240 --~~~~~~~~a~~~L~nL~~~~~~--------~----~~~~~~~~l~~L~~lL~----~~----d~~v~~~a~~~L~~l~ 297 (559)
+.......++.+|.|+-..... . ........+..|+.+|. .. -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 2234566677777777211100 0 00011234445555543 11 2467888888999988
Q ss_pred cCChhHHHHHHHhCc-----------------HHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 298 NGKNDKIQAVIEAGV-----------------CPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 298 ~~~~~~~~~~~~~g~-----------------l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
..+... +..+...+ -.+|+.++.+..+.++..+...+-.+|.
T Consensus 279 ~~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 765433 44444433 3445555555555555555555555544
No 143
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.24 E-value=0.0014 Score=51.82 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL--ASPNDDIREQAVWALGNVAGDSPRCRDLVLS 225 (559)
Q Consensus 159 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 225 (559)
++...+++|+|++..++...+.+.+.|++|.+++.- ...+|-+++.|+|++-|++..+++.+..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356678999999999999999999999999999864 4588999999999999999999998777654
No 144
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.03 Score=59.24 Aligned_cols=284 Identities=17% Similarity=0.148 Sum_probs=146.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
..+.+-.+|.+.. ..+..+|++++.++...++.... .++..|-.++.++...+|-.|+++|..+|...|..
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~--- 316 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA--- 316 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---
Confidence 4455556666667 78999999999988874433222 27788888899999999999999999998766642
Q ss_pred hhccC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204 223 VLSEE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 223 i~~~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
+...+ -+..++ .+.+.. .+..++..|..............-++.++.=+.++..-+..+++.+|+... +
T Consensus 317 v~~cN~elE~lI----td~Nrs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p 386 (865)
T KOG1078|consen 317 VTVCNLDLESLI----TDSNRS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---P 386 (865)
T ss_pred ccccchhHHhhh----cccccc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---c
Confidence 11111 122222 222222 233333333332222222222222222332233333344555555555443 2
Q ss_pred hHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204 302 DKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK 380 (559)
Q Consensus 302 ~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 380 (559)
.. ..+.+..|..+|.. +.-+.+.....+|..++..++.... .++..|...+.+. ....-+...|.-
T Consensus 387 ~k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhl 453 (865)
T KOG1078|consen 387 RK-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHL 453 (865)
T ss_pred HH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHH
Confidence 11 11334555555554 2334556666666666665554433 3344555555433 233334444444
Q ss_pred hhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHH
Q 042204 381 ITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCL 460 (559)
Q Consensus 381 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l 460 (559)
+....|. .......+..+.+.+--.+..++..|..++.++.... +. ....+...|..++.+.|.+++..|.
T Consensus 454 LG~EgP~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~-----l~~sI~vllkRc~~D~DdevRdrAt 524 (865)
T KOG1078|consen 454 LGKEGPK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VV-----LLPSILVLLKRCLNDSDDEVRDRAT 524 (865)
T ss_pred HhccCCC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CC-----ccccHHHHHHHHhcCchHHHHHHHH
Confidence 4321000 0001123333444444456667777777777776321 11 1122445566666777777777777
Q ss_pred HHHHHHH
Q 042204 461 KGLENIL 467 (559)
Q Consensus 461 ~~l~~il 467 (559)
-.+..+.
T Consensus 525 f~l~~l~ 531 (865)
T KOG1078|consen 525 FYLKNLE 531 (865)
T ss_pred HHHHHhh
Confidence 6666655
No 145
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.017 Score=61.25 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=153.0
Q ss_pred hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC-HhHHHHHHHHHHHh
Q 042204 218 RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND-KEVLTDACWALYFL 296 (559)
Q Consensus 218 ~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l 296 (559)
.-|...+..|+...|+++. ....+..+.....+|.- .-.-........++.+...++.+. .--...++.++.||
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 3466777889999999988 44445666666666661 101111112344555555554332 12235688899999
Q ss_pred ccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHH
Q 042204 297 SNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC-GALPYLLVLLIHSHKKSIKNHAC 375 (559)
Q Consensus 297 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~v~~~a~ 375 (559)
+..+....+.++..-.++.+-.++...++..+..++..+.||..++.-....+.+. ..++.....+... ......+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 97777666778888788888888888999999999999999999887776777773 5566666666555 777777777
Q ss_pred HHHHHhhcCCHHHHHH-HHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204 376 WTISKITAGNREQIQA-VIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448 (559)
Q Consensus 376 ~~L~nl~~~~~~~~~~-li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 448 (559)
.++..|+.-....+.. .--......+..++.++++++|...+..+.|+.. +..+....+.....+..+..+-
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHH
Confidence 7777676644444442 2233467888999999999999999999999554 3556666666655555555443
No 146
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.29 Score=53.54 Aligned_cols=361 Identities=13% Similarity=0.115 Sum_probs=197.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.+.-.++|+---.+-.|++.+..+.+.+-.++ ..-..++....++|..++.--++.+|+-+|..+.+.......
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~---~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP---NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 34445556677777899999999999754432222 122335666777777433368999999999999885443323
Q ss_pred HHHh--CCCHHHHHHhhCCCCHHHHHHHHH-HHHHHhCCCchhhhhhhccCCHHHHHHHhch----hh-hHhHHHHHHHH
Q 042204 180 VVID--HGAVPIFVKLLASPNDDIREQAVW-ALGNVAGDSPRCRDLVLSEEALIPLLAQLNE----HA-KLSMLRTATWT 251 (559)
Q Consensus 180 ~i~~--~g~i~~L~~lL~~~~~~v~~~a~~-~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~----~~-~~~~~~~a~~~ 251 (559)
.+-. .+.++.|+++.+.-+.+....++. .++..+..-..+.-.+ .......+++++.. +. +.+-.-.|.++
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 2222 245556666666533333222322 2233332211111111 11233445555532 11 11112223333
Q ss_pred HHHh---hcCC---CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC
Q 042204 252 LSNF---CRGM---PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS 325 (559)
Q Consensus 252 L~nL---~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 325 (559)
|..+ ...- |..-......++|++-..|+++-.++-..++..+.+++....+....+. |+++.+.+.+.....
T Consensus 619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~ 696 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI 696 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence 3332 2211 2122223355677777788888888888888888888765544433343 568888888888777
Q ss_pred cchhhHHHHHHHhhcCChHHHHHHHhCC-----ChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204 326 SVLSPALQTIGHIVAGDDFQTQCIINCG-----ALPYLLVLLIHSH-KKSIKNHACWTISKITAGNREQIQAVIDAGLIG 399 (559)
Q Consensus 326 ~v~~~al~~L~nl~~~~~~~~~~~~~~g-----~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~ 399 (559)
..-....-+|.|+++.... .+...+ ++..+..+|.+.. ...-...|+..+.-+.......++..+.. ++.
T Consensus 697 dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~ 772 (1010)
T KOG1991|consen 697 DYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLE 772 (1010)
T ss_pred HHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHH
Confidence 7777888888888875432 222221 2334444554421 22334446776666654211133332221 233
Q ss_pred HHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-----CCChHHHHHHHHHHHHHHHhh
Q 042204 400 PLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-----CANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 400 ~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-----~~d~~v~~~~l~~l~~il~~~ 470 (559)
..+..+.. .+...+..++..+.|............|-+.|+...+-.+.- .....-++.|+-+|..++..+
T Consensus 773 ~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~ 850 (1010)
T KOG1991|consen 773 LALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLG 850 (1010)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 33333333 456788888888877777656777778778887655444331 111223456666777777765
No 147
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0015 Score=64.81 Aligned_cols=270 Identities=19% Similarity=0.152 Sum_probs=143.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCC----CCchHHHHHhcCcHH-HHH------HhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204 107 GVWSDDNNLQLEATTKFRKLLSIE----RSPPIEEVIQSGVVP-RFV------EFLMREDYPQLQYEAAWALTNIASKTS 175 (559)
Q Consensus 107 ~L~s~~~~~~~~a~~~l~~lls~~----~~~~~~~ii~~g~v~-~Lv------~lL~~~~~~~~~~~a~~~L~nl~~~~~ 175 (559)
.+...+++.++.+++.+.++...- .+++.+.-...|.+- .+. ..-++.. +..+..++.++.+|.....
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAF 381 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhh
Confidence 345667888888888888765321 122222222222111 111 0111222 4667777777777766321
Q ss_pred hhHHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 176 EDTKVVIDHGAVPIFV-KLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 176 ~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
+.-..=.+ -..+.+. ..-.+++.-++..|+++++-+.-+...-.+...-.+....++..+ .+.....+..+.|++.|
T Consensus 382 ~~lpn~~~-T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 382 SNLPNDRQ-TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGN 459 (728)
T ss_pred cCCCCcch-hhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhh
Confidence 11000000 0111111 121234455666777777766554332223333333455555555 45566788899999999
Q ss_pred hhcCC----CCCcHhh--H-hchHHHHHHhh---ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhC-------cHHHHH
Q 042204 255 FCRGM----PRPIFEQ--V-RPALPVLAQLV---HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAG-------VCPRLV 317 (559)
Q Consensus 255 L~~~~----~~~~~~~--~-~~~l~~L~~lL---~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-------~l~~L~ 317 (559)
++..- |.+.... . ...+..+...- ..++..|..++.++|+|+... .+.+.+.+ .+..+.
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~ 535 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALI 535 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcc
Confidence 98532 4433222 1 22222232222 234678999999999998832 22222221 111211
Q ss_pred Hh-hCCCCCcchhhHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 318 EL-LGHRSSSVLSPALQTIGHIVAGDDF-QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 318 ~l-L~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
.. .-.....|+..||+++||+..+..- ....-....+++.|..++.+..+.+||..|+.+|.--..
T Consensus 536 ~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 536 STVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 11 2224567999999999999986542 111112234577788888665589999999999876643
No 148
>PRK14707 hypothetical protein; Provisional
Probab=97.10 E-value=0.53 Score=55.66 Aligned_cols=348 Identities=18% Similarity=0.123 Sum_probs=200.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHH
Q 042204 152 MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALI 230 (559)
Q Consensus 152 ~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~ 230 (559)
+.+++++.+..+....+-++. ++..+..+ +...|..+++-++. ++..-.++++..|.....+....+..+ +...+.
T Consensus 174 Kw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va 250 (2710)
T PRK14707 174 KWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELG 250 (2710)
T ss_pred cCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHH
Confidence 345556777777777677776 44555444 45566666666665 443334445555555444434444443 333456
Q ss_pred HHHHHhchhhhHhHHHHHHHHHH-HhhcCCCCCcHhhH-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204 231 PLLAQLNEHAKLSMLRTATWTLS-NFCRGMPRPIFEQV-RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI 308 (559)
Q Consensus 231 ~Ll~ll~~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 308 (559)
..++.|.+-++......++.++. .+... +.....+. ..+-..|..+-+..|..+-..+...|..=.-.+.+..+.+-
T Consensus 251 ~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~ 329 (2710)
T PRK14707 251 NALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN 329 (2710)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc
Confidence 66666655556555555554444 34433 22222222 23334444455567777766665555443333554444443
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204 309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388 (559)
Q Consensus 309 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 388 (559)
..++-..|-.+-+-++..+...|...|.--...++...+.+--.|+-..|-.+-+-+ +..+...|+..|..-..++++.
T Consensus 330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l 408 (2710)
T PRK14707 330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLEL 408 (2710)
T ss_pred hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhh
Confidence 334444444444457766777777666655555665554333334444444444556 6667777776666555577777
Q ss_pred HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
.+.+-..|+-..|-.+-+-++..+...++.+|.--..+ +++....|--.++...|-.+-+.+|..+...+.+.|..-+.
T Consensus 409 ~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 409 RKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred hhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 66666555555555555678888888888888766554 56666655555666677777788998877766666655453
Q ss_pred hhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 042204 469 VGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518 (559)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il 518 (559)
.... .++-|.-.+....|..|...++...+..|..-|
T Consensus 488 ~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~l 524 (2710)
T PRK14707 488 HERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASAL 524 (2710)
T ss_pred ccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 3222 344455555667777888888877666655443
No 149
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.10 E-value=0.0037 Score=66.90 Aligned_cols=190 Identities=17% Similarity=0.143 Sum_probs=129.9
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-------------hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-------------RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL 252 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L 252 (559)
+-..|+.+|++ +++-..++.++.-+..|++.. |+.+. ..+++.++..+. ..+...+.+...+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence 34566777765 344556777777777666543 22221 235777777774 55566778888899
Q ss_pred HHhhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC---Ccch
Q 042204 253 SNFCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS---SSVL 328 (559)
Q Consensus 253 ~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~ 328 (559)
+++..+-|.... .....++|.|++.|.-.|..++..++.++.-+....+.....-++ -++|.+..+=.+.+ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 998886654322 234678899999999999999999999998887655544333332 36777777766554 4689
Q ss_pred hhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204 329 SPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI 381 (559)
Q Consensus 329 ~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 381 (559)
..|+.+|..+.+.-+...-....-.++..|...|.++ ..-||++|..+=.+.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 9999999999984443222233336788899999998 889999998765443
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.08 E-value=0.051 Score=53.34 Aligned_cols=192 Identities=18% Similarity=0.206 Sum_probs=124.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Cc
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK--TS 175 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--~~ 175 (559)
.+...+..+.......+..++..+.+++... ...+.+. ...++..+.+.++.+. .+-+..|+++++-++-. ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 4778888888888999999999999998763 2223332 2347888889998887 57777788877776552 22
Q ss_pred hhHHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHHHHhC---CCchhhhhhhccCCHHHHHH--Hhch---------h
Q 042204 176 EDTKVVIDHGAVPIFVKLLASP--NDDIREQAVWALGNVAG---DSPRCRDLVLSEEALIPLLA--QLNE---------H 239 (559)
Q Consensus 176 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~r~~i~~~g~l~~Ll~--ll~~---------~ 239 (559)
.....+++ ...|.|.+.+.+. ...+|..|+.+|+-++. ..+..-...+ ..+..+.. .... .
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCC
Confidence 34444444 5778888888763 45677777777777653 2222111000 11221111 1111 1
Q ss_pred hhHhHHHHHHHHHHHhhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 240 AKLSMLRTATWTLSNFCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 240 ~~~~~~~~a~~~L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
++..+...|+.+.+-|...-|.... ......+|.|..+|.++|.+|+..|-.+|.-|.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2345777777666666655443222 345778999999999999999999999887775
No 151
>PRK14707 hypothetical protein; Provisional
Probab=97.08 E-value=0.62 Score=55.12 Aligned_cols=401 Identities=16% Similarity=0.093 Sum_probs=216.0
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 102 AAMVAGVW--SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 102 ~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.-+++.+. .++.+.+ .++..|...++.+ ...++.+-..|+...|-.+-+-+++++.+..+...-..++. ....+.
T Consensus 166 ~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~~ 242 (2710)
T PRK14707 166 SLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLRN 242 (2710)
T ss_pred HHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHHH
Confidence 34444443 2333333 3445555555543 33444444444444454555567756666555544445555 444444
Q ss_pred HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 180 VVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.+ +...+-..++.|+. ++.....+++.+|..=..+.+..+..+-.. .+...++-|.+-.+..+-+.+...|..=...
T Consensus 243 ~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 243 EL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred hC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 43 33445555555554 666666666666655444555555544322 3445555665666666666655555543333
Q ss_pred CCCCcHhhH-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 259 MPRPIFEQV-RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 259 ~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
++.....+. .++-..|..+-+.+|..+-..+..+|..=...+++..+.+--.|+-..|-.+-+-++..+...|...|..
T Consensus 321 d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 321 DPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAE 400 (2710)
T ss_pred cHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 333222222 2333344444456666666555555554443455554555444554445455555776666777777765
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~ 417 (559)
-..++.+..+.+-..|+-..|..+-+-+ +..+...++..|.--...+.+..+.+--.++...|-.+-+-+|..+-..|+
T Consensus 401 ~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa 479 (2710)
T PRK14707 401 HVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTA 479 (2710)
T ss_pred HhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHH
Confidence 5556666554444445555555555566 777777777777766667777666554444444444444567777777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHH-HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204 418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV-CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL 496 (559)
Q Consensus 418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~-~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l 496 (559)
..|..-... +++....|--+++...|-.+-+.+|...... +.+....+.. . ......|..-+..
T Consensus 480 ~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~-------------~~l~~~~~~~~~~ 544 (2710)
T PRK14707 480 SALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-E-------------LQLRKAFDAHQVV 544 (2710)
T ss_pred HHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-c-------------hhhhhhhhhHHHH
Confidence 766554443 4455555444556666777777777654333 3333333331 1 1123334444455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 497 EKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 497 ~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
..+..|..+++.+..+.|..-|-..+.
T Consensus 545 ~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 545 NTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 666677778877777776665555443
No 152
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.07 E-value=0.015 Score=57.35 Aligned_cols=212 Identities=12% Similarity=0.089 Sum_probs=142.8
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh-----hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR-----DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r-----~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
.+...+.+..|+..|..-+-+.+..+...++++.......+ +.+... .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45556889999999999899999999999999986544332 233322 122233333333456666666667777
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCCCCCcchhhH
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGHRSSSVLSPA 331 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a 331 (559)
.++..+-.........+-.+...+..++-++..+|..++..+..........++.. .++.....+|.+++--++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 76654323333335566667788888999999999999999887666665666655 356778888999888899999
Q ss_pred HHHHHHhhcCChHH---HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHH
Q 042204 332 LQTIGHIVAGDDFQ---TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVI 393 (559)
Q Consensus 332 l~~L~nl~~~~~~~---~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li 393 (559)
+..||.+....... ...+-+..-+..++.+|++. +..+|-+|..++--+.+. .+..+..++
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 99999998754432 23333446688899999999 999999999999888773 333444443
No 153
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.03 E-value=0.025 Score=50.77 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHH
Q 042204 324 SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN 403 (559)
Q Consensus 324 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~ 403 (559)
++.+|..++.++|.++..-+...+ ..++.+...|.++ ++.||+.|+.+|+.+...+.-.. +..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 356888999999999886665444 5578999999999 99999999999999976422111 1124467788
Q ss_pred HhhcCChhHHHHHHHHHHHHhcC
Q 042204 404 LLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 404 lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999886
No 154
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.01 E-value=0.0055 Score=48.49 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=67.1
Q ss_pred hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc
Q 042204 328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407 (559)
Q Consensus 328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~ 407 (559)
|..++.+|..++.+-.......++ .++++++..+.++ +..||..||.+|.|++......+-.... .+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~-~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFN-EIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 456677777777665555444444 5788999999998 9999999999999998643333322222 388999999999
Q ss_pred CChhHHHHHHHHHHHHh
Q 042204 408 AEINIKNWAAWAISNAT 424 (559)
Q Consensus 408 ~~~~v~~~a~~aL~nl~ 424 (559)
.++.||..| ..|-++.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999988766 5554443
No 155
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.96 E-value=0.17 Score=50.04 Aligned_cols=205 Identities=12% Similarity=0.102 Sum_probs=144.9
Q ss_pred HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-----HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-----QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 305 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-----~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
+.+...+++..|+..|..-+-+.+..+..+.+++...... ..+.+.. ..-+.+..++..-+++++--.+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 5667778999999999888888899999999999875422 2233332 323334444433225566666666666
Q ss_pred HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc---CChHHHHhcCCCCChHHH
Q 042204 380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE---KCIKPLCDLLPCANPTIV 456 (559)
Q Consensus 380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~d~~v~ 456 (559)
.++. .+...+.++....+..+.+.++.++.++...|...+..+... .+.....++.. .++..+..+|.+++--++
T Consensus 149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 6654 466677888888899999999999999999999999998775 34454444443 346788889999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 457 TVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 457 ~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
..++..|+.++-.... .+-....+.+..-+..+..|..++...|+-.|..+..-|.
T Consensus 227 rqslkLL~ellldr~n----------~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSN----------FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHSGGG----------HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhH----------HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 9999999999954332 2334566777778889999999999999999998877543
No 156
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.84 E-value=0.0081 Score=47.59 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=56.7
Q ss_pred chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204 327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGNREQIQAVI 393 (559)
Q Consensus 327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~li 393 (559)
.+...+++|+|++..+....+.+.+.|+++.+++...- +.+|-+|+-|.|++.|++.+++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45678999999999999888899999999999987642 22799999999999999999888766554
No 157
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.81 E-value=0.039 Score=47.51 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=98.3
Q ss_pred HHHHHHhCcHHHHHHhhCCCCC------cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHH
Q 042204 304 IQAVIEAGVCPRLVELLGHRSS------SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACW 376 (559)
Q Consensus 304 ~~~~~~~g~l~~L~~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~ 376 (559)
.+.++..+++..|++++.++.. .+...++.++..+..... .....++..++..+........ +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3567888999999999987653 445556777666665432 2233455566778888886553 5789999999
Q ss_pred HHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHH
Q 042204 377 TISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYL 435 (559)
Q Consensus 377 ~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 435 (559)
.|-++...++...+.+-+.=-++.|+..|+..+.+++.+|+..+..+...+++..++.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999887777666665554599999999999999999999999999988776665543
No 158
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.15 Score=56.82 Aligned_cols=239 Identities=13% Similarity=0.098 Sum_probs=144.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccC
Q 042204 151 LMREDYPQLQYEAAWALTNIASKTSEDTKVVID--HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEE 227 (559)
Q Consensus 151 L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g 227 (559)
..+.+++.+|..+.++|..++.. +.......+ ..+...|.+-+++.....+...+.+|..|....+ +..+.+..
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-- 738 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-- 738 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 33343389999999999999985 332222211 1233455555566666777778888888764444 22222221
Q ss_pred CHHHHHHHhchhhhHhHHHHHHHHHHHhhc--CC----CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204 228 ALIPLLAQLNEHAKLSMLRTATWTLSNFCR--GM----PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 228 ~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~--~~----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
.++.++-.+ ++.+...++++..+|..++. .. ..+....+...++.+...+-.+...+....+-++..+.....
T Consensus 739 ~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 739 LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 122222223 56677888888888888882 11 222244556666666555444444444433555655553222
Q ss_pred hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI 381 (559)
Q Consensus 302 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 381 (559)
+....-.-.+++..+.-.|.+.++.++..|+..+..++..-++..-......+++.+..+++.. .-.+|..+-..+-.+
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 2222222235667777788999999999999999999987775432222234778888888776 777888888888777
Q ss_pred hc-CCHHHHHHHHH
Q 042204 382 TA-GNREQIQAVID 394 (559)
Q Consensus 382 ~~-~~~~~~~~li~ 394 (559)
+. ...+.++.+..
T Consensus 897 irkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 897 IRKFGAEELESFLP 910 (1176)
T ss_pred HHHhCHHHHHhhCH
Confidence 76 34555555554
No 159
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.77 E-value=0.061 Score=48.24 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCH-HHHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL-IPLLAQ 235 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l-~~Ll~l 235 (559)
|.+|..++.+++-++...+...+ ..++.+...|.++++.+|.+|+.+|..+...+ .+.-.|.+ ..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHH
Confidence 78999999999999885543332 45789999999999999999999999997442 22222333 667777
Q ss_pred hchhhhHhHHHHHHHHHHHhhcCC
Q 042204 236 LNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 236 l~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 7 7889999999999999998863
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.77 E-value=0.65 Score=48.74 Aligned_cols=291 Identities=15% Similarity=0.137 Sum_probs=154.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.....++...+. +...+..|+..+.+....- +...+. .+..++.++.+++ ..||..|++.|-.+|.++++..
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence 456777877775 5778888999999987652 333443 5788999999998 8999999999999999888877
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc--hhhhHhHHHHHHHHHHHhh
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN--EHAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~--~~~~~~~~~~a~~~L~nL~ 256 (559)
..++ ..|+++|.++++.-...+-++|..+...+|. +.+..+...+. ...+..+++.++..|..=.
T Consensus 95 ~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 95 SKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred hHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 7665 6899999998888888888888887654443 24566666663 2456678888887775433
Q ss_pred cCC-C---CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc----CChhHHHHHHHhCcHHHHHHhh--CC----
Q 042204 257 RGM-P---RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN----GKNDKIQAVIEAGVCPRLVELL--GH---- 322 (559)
Q Consensus 257 ~~~-~---~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~l~~L~~lL--~~---- 322 (559)
..- + .+..+....++..+.++|.+-..+-.......|..+-. ......+.+ ++.+.+.. ..
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~ 236 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDP 236 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---S
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCC
Confidence 322 1 11233445566666677754333333344455555553 123333333 33333332 11
Q ss_pred CCCcchhhHHHHHH----HhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHc
Q 042204 323 RSSSVLSPALQTIG----HIVAGDD--FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVIDA 395 (559)
Q Consensus 323 ~~~~v~~~al~~L~----nl~~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~ 395 (559)
.++......+.|+. -++.+.. .....+.+ .++|.+-.+ ....|.+.+.++..++..... ....
T Consensus 237 sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~~~---- 306 (556)
T PF05918_consen 237 SDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDARQ---- 306 (556)
T ss_dssp SSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT----THHH----
T ss_pred cCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccHHH----
Confidence 22222222333222 2222211 12222222 455554444 345677778888888763221 1222
Q ss_pred CCHHHHHHHhh------cCCh----hHHHHHHHHHHHHhcC
Q 042204 396 GLIGPLINLLQ------NAEI----NIKNWAAWAISNATSG 426 (559)
Q Consensus 396 ~~i~~Li~lL~------~~~~----~v~~~a~~aL~nl~~~ 426 (559)
.++.++++|. ...+ ...+..+.++.+++..
T Consensus 307 -~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 307 -LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp -HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 2344444442 1122 3456667777777765
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.75 E-value=0.14 Score=53.47 Aligned_cols=293 Identities=13% Similarity=0.088 Sum_probs=142.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc
Q 042204 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE 226 (559)
Q Consensus 147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 226 (559)
++...+ ++ +..+..|+..+.......|+.... ++..++.+..+.+..||.+|+..|..+|.+.++.-..+
T Consensus 28 il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 28 ILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 344444 34 688888998888888888877664 56788999999999999999999999999887654443
Q ss_pred CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhc-cCChh
Q 042204 227 EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLS-NGKND 302 (559)
Q Consensus 227 g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~-~~~~~ 302 (559)
...|+.+| +..+..-...+-++|..|...+| .+.+..+..-+. +.|+.+++.++..|..-. .-..+
T Consensus 98 --aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 98 --ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp --HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred --HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 56778887 55555555666667776665442 233444444333 567888999887774322 21111
Q ss_pred HHH--HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc----CChHHHHHHHhCCChHHHHHHh------cCCCchhH
Q 042204 303 KIQ--AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA----GDDFQTQCIINCGALPYLLVLL------IHSHKKSI 370 (559)
Q Consensus 303 ~~~--~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~~~~~g~l~~L~~lL------~~~~~~~v 370 (559)
... .=.+.-++..+-..|.+-...--...+.+|..+-. .+....+.++ +.+.... ... +++.
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s-D~e~ 241 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS-DPES 241 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS-SHHH
T ss_pred HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc-CHHH
Confidence 111 11112244555566654332222334444444443 1222223222 2333222 112 2332
Q ss_pred HHHHHHHHHH----hhc--CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q 042204 371 KNHACWTISK----ITA--GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPL 444 (559)
Q Consensus 371 ~~~a~~~L~n----l~~--~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 444 (559)
-.....++.. +.. .+...+..+.+. ++|.+-++ +.+.+...+.++.-++..........++. -+...|
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~L 315 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQLL 315 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHHH
Confidence 2222222221 112 244555555554 77766555 45677788888888887654333333221 123333
Q ss_pred HhcC--CCCChH----HHHHHHHHHHHHHHhhh
Q 042204 445 CDLL--PCANPT----IVTVCLKGLENILKVGE 471 (559)
Q Consensus 445 ~~lL--~~~d~~----v~~~~l~~l~~il~~~~ 471 (559)
..++ ....++ .++..+.++..+....+
T Consensus 316 ~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 316 KKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 3333 122333 45556666666655433
No 162
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.027 Score=59.88 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=134.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV 180 (559)
Q Consensus 101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 180 (559)
...+.++..-..+..++.+..+|...++....... .+++.+...+.....-.-.++++.+++|+++.+...+..
T Consensus 506 ~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~------~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~ 579 (748)
T KOG4151|consen 506 YEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSY------EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK 579 (748)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchh------hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH
Confidence 33444444444455555555555522222211111 245555555544332345689999999999998888988
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204 181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
++..-.++.+-.++...++..+..++..+.|+.-..--+...+.+...=.++........+......++.++..+.....
T Consensus 580 i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~ 659 (748)
T KOG4151|consen 580 ILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVE 659 (748)
T ss_pred HHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcch
Confidence 99888888888888889999999999999999866444444444433223344443344455555555555554443331
Q ss_pred C--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204 261 R--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL 319 (559)
Q Consensus 261 ~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 319 (559)
. ............+..++.+.+++++...+..+.++.....+....+.....++.+...
T Consensus 660 n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 660 NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 1 1133445566778888899999999999999999776666666666666666555444
No 163
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.16 Score=56.41 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=113.4
Q ss_pred HhchHHHHHHhhc----cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcC
Q 042204 267 VRPALPVLAQLVH----SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 267 ~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~ 341 (559)
...+.|.+++..+ ..||+++..|.-+|+.+..-+.+... .-+|.|+..|. ++++.+|..+.-++|.++-.
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3556777777774 46799999999999998865554322 24688888887 78999999999999998875
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHH
Q 042204 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421 (559)
Q Consensus 342 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~ 421 (559)
-+...+ -.-+.|...|... ++.+|+.|..+++++...+ .+--.|.+..+..++.+++.+++..|-..+.
T Consensus 992 fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 992 FPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred cccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 554333 3446788888888 9999999999999997641 2234688999999999999999999988777
Q ss_pred HHhcCC
Q 042204 422 NATSGG 427 (559)
Q Consensus 422 nl~~~~ 427 (559)
.++..+
T Consensus 1061 Els~k~ 1066 (1251)
T KOG0414|consen 1061 ELSSKG 1066 (1251)
T ss_pred Hhhhcc
Confidence 777765
No 164
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.68 E-value=0.0048 Score=50.21 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=58.4
Q ss_pred ChHHHHhcC-CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 042204 440 CIKPLCDLL-PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518 (559)
Q Consensus 440 ~l~~L~~lL-~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il 518 (559)
++..|+.+| .+.|+.++.+|+.-|..+++..+. -+..+++.|+-+.|.+|+.|+|++|+..|...+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 578888988 456888999999999999977544 367789999999999999999999999999998
Q ss_pred Hhhc
Q 042204 519 ETYW 522 (559)
Q Consensus 519 ~~~f 522 (559)
+++.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 165
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.66 E-value=0.13 Score=51.95 Aligned_cols=216 Identities=13% Similarity=0.152 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHH---HHhC---CCchhhhhhhccCCHHHHHHH
Q 042204 162 EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALG---NVAG---DSPRCRDLVLSEEALIPLLAQ 235 (559)
Q Consensus 162 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~---nl~~---~~~~~r~~i~~~g~l~~Ll~l 235 (559)
.|+++|-.+....+.....+.+.+++..+++.+..+-. .++. +... ..++.+..... ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 68 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVD-------FALEENKNEEAGSGIPPEYKESSVD-------GYS 68 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHH-------HHHhcccccCCCCCCCCCccccccc-------ccc
Confidence 46777778887777778888999999999998853322 2222 1110 00111111111 000
Q ss_pred hchhhhHhHHHHHHHHHHHhhc-CC-C-CCcHhh-H-hchHHHHHHhhccC---CHhHHHHHHHHHHHhccCChhHHHHH
Q 042204 236 LNEHAKLSMLRTATWTLSNFCR-GM-P-RPIFEQ-V-RPALPVLAQLVHSN---DKEVLTDACWALYFLSNGKNDKIQAV 307 (559)
Q Consensus 236 l~~~~~~~~~~~a~~~L~nL~~-~~-~-~~~~~~-~-~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~~~~~~~~ 307 (559)
+ ......+.+..+.++..+.. .. . ...... . ..++..|...+.+. -+.+...|+..+..+..+++.....+
T Consensus 69 i-~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l 147 (379)
T PF06025_consen 69 I-SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSIL 147 (379)
T ss_pred c-CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHH
Confidence 1 12233455666666666666 22 1 111112 2 34555666667654 47889999999999999999888899
Q ss_pred HHhCcHHHHHHhhC-C---CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh--HHH-HHHHHHH-
Q 042204 308 IEAGVCPRLVELLG-H---RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS--IKN-HACWTIS- 379 (559)
Q Consensus 308 ~~~g~l~~L~~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~--v~~-~a~~~L~- 379 (559)
.++|+.+.+++.+. . ++.++....-.+++.||-+ ....+.+.+.+.++.+.+++.++ +.- .+. +.+..++
T Consensus 148 ~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~ 225 (379)
T PF06025_consen 148 QEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGN 225 (379)
T ss_pred HHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHH
Confidence 99999999999887 3 2344555555667777764 44667788899999999999876 321 121 3333333
Q ss_pred ---HhhcCCHHHHHHHHH
Q 042204 380 ---KITAGNREQIQAVID 394 (559)
Q Consensus 380 ---nl~~~~~~~~~~li~ 394 (559)
.+.++.|.....+++
T Consensus 226 ~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 226 SFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHccCHHHHHHHHH
Confidence 344455555544444
No 166
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.68 Score=49.18 Aligned_cols=281 Identities=16% Similarity=0.115 Sum_probs=162.7
Q ss_pred cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 042204 141 SGVVPRFVEFLMRE-------DYPQLQYEAAWALTNIAS--KTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGN 211 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 211 (559)
.|+++.++..|... +++.-.+.|++.+.++.+ ..+.....+.+.=+++.++..++++.--++..|+..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 47889999988421 335667788888888876 344445556666678888888899999999999999999
Q ss_pred HhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC--CCcHhhHhchHHHHHHhhccCCHhHHHHH
Q 042204 212 VAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP--RPIFEQVRPALPVLAQLVHSNDKEVLTDA 289 (559)
Q Consensus 212 l~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a 289 (559)
+..+ ..+..+...+.+...+.+ ++++..++-.|+.++.-+..+.. ..-...+.+.++.|+.+-+.-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9544 334444444566666777 44677888888888888887651 11112234555555555555555655555
Q ss_pred HHHHH-HhccCChhHHHHHHHh---CcHHHHHHhhCCCC------CcchhhHHHHHHHhhc---CCh--HHHHHHHhCCC
Q 042204 290 CWALY-FLSNGKNDKIQAVIEA---GVCPRLVELLGHRS------SSVLSPALQTIGHIVA---GDD--FQTQCIINCGA 354 (559)
Q Consensus 290 ~~~L~-~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~------~~v~~~al~~L~nl~~---~~~--~~~~~~~~~g~ 354 (559)
...+. +.++.-......+... ..+..-..++..++ ..-+..|..+|..+.+ .-+ ...-.-+....
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 54432 2222111111111111 12223333333331 1123334444443332 111 11111233356
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCC
Q 042204 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI-NIKNWAAWAISNATSGGS 428 (559)
Q Consensus 355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~-~v~~~a~~aL~nl~~~~~ 428 (559)
.|.+-=+|++. ..+.-.+|+..+-+.+-...+ +.. +--|+.+.+.+++.+... .-..++.-++.|+...|.
T Consensus 643 ypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 643 YPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 66666677777 778888898888777543222 111 122456666666666553 667889999999988763
No 167
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.029 Score=62.02 Aligned_cols=161 Identities=24% Similarity=0.240 Sum_probs=124.2
Q ss_pred CcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCc
Q 042204 142 GVVPRFVEFLMRE---DYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSP 217 (559)
Q Consensus 142 g~v~~Lv~lL~~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 217 (559)
.+.|.+++..+.+ ++|++|..|.-+|+.+..-+.+... ..+|.|+..+. ++++.+|.+++-+++-++..-|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3678888888543 2399999999999999886655444 35789999887 7999999999999999987666
Q ss_pred hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 218 RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 218 ~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
..-+. .-+.|...| .+.++.++++|+.+|++|.... +..+.|.++.+..+|.++++++..-|=..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 53222 245566666 7889999999999999998764 5667899999999999999999888877777777
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCC
Q 042204 298 NGKNDKIQAVIEAGVCPRLVELLGHR 323 (559)
Q Consensus 298 ~~~~~~~~~~~~~g~l~~L~~lL~~~ 323 (559)
...+.. + .++|.++..|++.
T Consensus 1064 ~k~n~i----y--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI----Y--NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccch----h--hhchHHHHhhccC
Confidence 544322 2 3577777777665
No 168
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.53 E-value=0.15 Score=46.72 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcC-CchhHHHHHhCCC
Q 042204 112 DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASK-TSEDTKVVIDHGA 186 (559)
Q Consensus 112 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~ 186 (559)
...-...|+..|.-++|+ ++.+..+.++-+--.|-.+|... ..+-+|..++.+++.+... +.+....+...++
T Consensus 92 qsnRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI 169 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI 169 (293)
T ss_pred ccchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 445667788888888876 77888888887666666666532 2368999999999999873 4455677788999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc-------CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE-------EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-------g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
||..++.+..+++.-+.-|..++..|..++.......... ..+..++..+.+.++..+.+.++.+..+|+.+.
T Consensus 170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999988776532221111 123334444445567778888888888888763
No 169
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.51 E-value=0.54 Score=46.18 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=125.1
Q ss_pred HHHHHHhhccCCHhHHHHHHHHHHHhccCCh--hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC--ChHHH
Q 042204 271 LPVLAQLVHSNDKEVLTDACWALYFLSNGKN--DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG--DDFQT 346 (559)
Q Consensus 271 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--~~~~~ 346 (559)
+...+..+.......+..++..+..+..... +.+..- ...++..+...++.+...-+..|+++++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4444555666778899999999988874332 221111 123677788888877766677788888777643 22233
Q ss_pred HHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHH--Hhhc----------CCh
Q 042204 347 QCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLIN--LLQN----------AEI 410 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~--lL~~----------~~~ 410 (559)
..+++ .+.|.|...+.... ...+|..++.+|+-++. ...+.+..+++ .+..+.. ..+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 34444 56788888887652 34565666666666543 44454443332 2221211 1211 135
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 411 NIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 411 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
.+...|+.+.+-+....+...+.... ...++.|..+|++.|.+|+..|-++|.-++.....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 68888888887777665554444433 34689999999999999999999999988887764
No 170
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.18 Score=54.26 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=136.6
Q ss_pred hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204 238 EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV 317 (559)
Q Consensus 238 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 317 (559)
.++.+.++..++..+..+.+...........+++......+.+.|+-|--+|+..+..||+..++ .++|.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44556788999999999998764455556688999999999999999999999988888865443 3567777
Q ss_pred Hh-hCCC---CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204 318 EL-LGHR---SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393 (559)
Q Consensus 318 ~l-L~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li 393 (559)
+. .+.. ....+...-.++++++..-.+......+ -++..++...+.+ +...|-.++..++++|....-.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 3332 1344555557777776544333322222 4556677777777 778899999999999863332222222
Q ss_pred HcCCHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHH--HcCChHHHHhcCC-CCChHHHHHHHHHHHHH
Q 042204 394 DAGLIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLV--REKCIKPLCDLLP-CANPTIVTVCLKGLENI 466 (559)
Q Consensus 394 ~~~~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~i 466 (559)
. .++..++.+.. ++.+-+|+.|+..+..+..+........+. -.+....+..+.. +++..++..+..++..+
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 1 14445555554 456789999999999988865443333221 1223333444333 33343444444444443
No 171
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.72 Score=48.96 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=88.2
Q ss_pred HHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204 314 PRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393 (559)
Q Consensus 314 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li 393 (559)
+.+-+++.+.++-+|.....+++---.++. +.+++..|+..--++.+.+||+.|.-+|+-++..++++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence 344555666666667666655543222221 22456666666434448999999999999999888884
Q ss_pred HcCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 394 DAGLIGPLINLLQN-AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 394 ~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
++..+.+|.. -++.||--++.||+-.+.+..... ++..|..+..++..-|++.|+-++.-|+.
T Consensus 590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 4555666754 489999999999998877643222 34555556666777889999988887774
No 172
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.27 Score=51.81 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=81.2
Q ss_pred hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204 265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
..+.+.+..++....++|..|+..+|..|..+.+... .+...+-.++...+...+.+..+.||..|+.+|+.+=..+..
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3567777777777788999999999999999986433 334444556788888888999999999999999988632211
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI 378 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L 378 (559)
. +..+...+..+++++++++||+.|...|
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 1 1245678888998877999998875444
No 173
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.27 E-value=0.034 Score=59.87 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=113.6
Q ss_pred HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
...++|.++..+...+...+..-+.+|+++..+-+.. .+.. ..++|.|++.|+-++..++..+++++..+......
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 4678899999988777888888888999888766642 3332 25788899999999999999999999988876654
Q ss_pred HHHHHHhCCChHHHHHHhcCCCc--hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHH
Q 042204 345 QTQCIINCGALPYLLVLLIHSHK--KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~n 422 (559)
....-++ -++|.++.+=.+..+ ..+|..|..++..++...|...-......++..|+..|.++..-+|++|+.+=.+
T Consensus 943 L~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 943 LQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred cchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 3332232 567777777666522 6789999999999987333322222233478889999998888999999887555
Q ss_pred Hh
Q 042204 423 AT 424 (559)
Q Consensus 423 l~ 424 (559)
..
T Consensus 1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred hh
Confidence 43
No 174
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.23 E-value=0.31 Score=45.56 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=119.1
Q ss_pred CHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHh-------hCCCCCc-----chhhHHHHHHHhhcCChHHHHH
Q 042204 282 DKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVEL-------LGHRSSS-----VLSPALQTIGHIVAGDDFQTQC 348 (559)
Q Consensus 282 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~l-------L~~~~~~-----v~~~al~~L~nl~~~~~~~~~~ 348 (559)
+++.++.|+.-|+.--+..++..-.+... |.+..|++= +..+.-. -...|+..+..++.+++ ....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe-tr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE-TRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT-THHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH-HHHH
Confidence 57778888877777665555554444444 655554432 2222211 12346666667777554 5567
Q ss_pred HHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 349 IINCGALPYLLVLLIHSH----KKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 349 ~~~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
++++.+.-.|...|+... -+.+|-.+..+++.+.. .+++.+..+++.+++|..++.++.++.-.+..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888888888888886541 24577888888988886 5788889999999999999999999999999999999998
Q ss_pred hcCC--------CHHHHHHHHHcCChHHHHh-cCCCCChHHHHHHHHHHHHHHHh
Q 042204 424 TSGG--------SHEQIKYLVREKCIKPLCD-LLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 424 ~~~~--------~~~~~~~l~~~~~l~~L~~-lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
..+. +++....+.. ++..++. +.+.+++++.+.+..+..++.+.
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 8742 2333222221 3443333 34667889999999888887643
No 175
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.15 E-value=0.045 Score=49.57 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--------EDYPQLQYEAAWALTNI 170 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~--------~~~~~~~~~a~~~L~nl 170 (559)
.....+++.+.+..... ..+..|+..+......-++.+++.|++..|+++|.. .....++.+++.||..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 35567888888766443 455566666665434558888999999999998863 12368999999999999
Q ss_pred hcCCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204 171 ASKTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVA 213 (559)
Q Consensus 171 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 213 (559)
.. +......++. .+++..++..|.+++..++..++..|+.+|
T Consensus 144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98 5565666665 688999999999999999999999999886
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.10 E-value=0.19 Score=49.34 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=85.3
Q ss_pred CcHHHHH-HhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHH
Q 042204 311 GVCPRLV-ELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQ 388 (559)
Q Consensus 311 g~l~~L~-~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~ 388 (559)
+++..|+ ..+.+.++.+|..|+++||-.+--+..... ..++.+...++.+ +..++..|+.++..+.. +..+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 4455444 778889999999999999999987765443 3356778888777 89999999999999976 33333
Q ss_pred HHHHH-------HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 389 IQAVI-------DAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 389 ~~~li-------~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
..... ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 33222 2457888889999999999999999999998765
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.08 E-value=1.4 Score=48.74 Aligned_cols=210 Identities=16% Similarity=0.198 Sum_probs=124.6
Q ss_pred HhCCCHHHHHHhhCC-----CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---hhhh----HhHHHHHH
Q 042204 182 IDHGAVPIFVKLLAS-----PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---EHAK----LSMLRTAT 249 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---~~~~----~~~~~~a~ 249 (559)
.+.|++..++.++.+ ....+....+..|...+.. +.+|+.+++.|+++.|+..+. .... ..+.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 346899999998876 2334555555555555544 678999999999999999885 2222 34555555
Q ss_pred HHHHHhhcCCCCCcHh-------------hHhchHHHHHHhhcc----CCHhHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 042204 250 WTLSNFCRGMPRPIFE-------------QVRPALPVLAQLVHS----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGV 312 (559)
Q Consensus 250 ~~L~nL~~~~~~~~~~-------------~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 312 (559)
.++-.+.......... ....-+..+++.+.+ .++.+....+++|-+|+.++.+..+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 4444444322110000 012234555555543 468899999999999999999888777654
Q ss_pred HHHHHHhhCCC--CCcchhhHHHHHHHhhcCC------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204 313 CPRLVELLGHR--SSSVLSPALQTIGHIVAGD------DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG 384 (559)
Q Consensus 313 l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~------~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 384 (559)
+...+++=.-+ ...--...+.++..++.+- ....+.+++.|++...+..|... -|.. .+ .
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~---~ 338 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KN---T 338 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------cc---C
Confidence 23222221111 1111123356666665533 24567788889998888887654 3333 11 1
Q ss_pred CHHHHHHHHHcCCHHHHHHHhh
Q 042204 385 NREQIQAVIDAGLIGPLINLLQ 406 (559)
Q Consensus 385 ~~~~~~~li~~~~i~~Li~lL~ 406 (559)
+++.+...+....+|..+.+|.
T Consensus 339 ~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 339 DSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred CCHHHHHHhcCCcHHHHHHHHH
Confidence 3344555666667777777764
No 178
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.08 E-value=0.14 Score=44.05 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=93.7
Q ss_pred hhhhhccCCHHHHHHHhchhhh-----HhHHHHHHHHHHHhhcCCCCCcHhh-HhchHHHHHHhhccC--CHhHHHHHHH
Q 042204 220 RDLVLSEEALIPLLAQLNEHAK-----LSMLRTATWTLSNFCRGMPRPIFEQ-VRPALPVLAQLVHSN--DKEVLTDACW 291 (559)
Q Consensus 220 r~~i~~~g~l~~Ll~ll~~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~-~~~~l~~L~~lL~~~--d~~v~~~a~~ 291 (559)
...+++.+++..|+.++..+.. .++...++.++..|-... ...... ....+..++..++.. |..+...++.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4556788899999999965542 477788888899888765 222332 245666677777543 7899999999
Q ss_pred HHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204 292 ALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 292 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
.|-++..+++...+.+.+.=-++.|+.+|..+++.++..|+..+..+....++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999988887666666666689999999999999999998888777665543
No 179
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.07 E-value=0.0087 Score=48.71 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=61.1
Q ss_pred hchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 268 RPALPVLAQLV-HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 268 ~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
..++..|+.+| .+.|+.++.-||.=|+.++...+.....+-+.|+=..++++|.++++.|+..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45778888888 45688899999999999998888776677778999999999999999999999999987754
No 180
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.19 Score=54.01 Aligned_cols=224 Identities=12% Similarity=0.096 Sum_probs=141.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc
Q 042204 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE 226 (559)
Q Consensus 147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 226 (559)
.+..+.++. +.++-.++..|..+.. ..+....+...+++...+..|++.++-+--.|+..+..+|...|+
T Consensus 732 ai~sl~d~q-vpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-------- 801 (982)
T KOG4653|consen 732 AISSLHDDQ-VPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-------- 801 (982)
T ss_pred HHHHhcCCc-ccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------
Confidence 334444555 6789999999999998 446666677789999999999999999999999988888855433
Q ss_pred CCHHHHHHHhchhh---hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH
Q 042204 227 EALIPLLAQLNEHA---KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303 (559)
Q Consensus 227 g~l~~Ll~ll~~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~ 303 (559)
.+++-+.....+.. .++.+-.+..++.++..............++..++..++++|...+..++..+++++......
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 24555555332211 123333444666666665433333444556666777777778888999999999998544322
Q ss_pred HHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 304 IQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINC---GALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 304 ~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
....+ ..++..++.+... ++.-+|..|+..+..+..+.....-.+... .....+........+..++..|+.++-
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 22211 1244555555544 556789999999998887665432222211 223333333333325667777776664
Q ss_pred Hh
Q 042204 380 KI 381 (559)
Q Consensus 380 nl 381 (559)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 44
No 181
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.99 E-value=0.29 Score=51.73 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=135.3
Q ss_pred hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204 266 QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 266 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 345 (559)
....++|.|++++...|..++...+.-+-...+.- .+..++..++|.+..-+.+.++.+|+.++.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~- 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK- 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence 44678999999999999999987776665555332 24567778999999999999999999999999988864332
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC-HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN-REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
..++...+..|..+-. +++..+|-...-+++.|+... +..++.+ ....+.+.+.++-...|..+.+++....
T Consensus 403 --~~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 --RNLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred --hhhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhhhccc----cchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 2333344445554444 337788888888888886542 2222222 3445555677776778888888887665
Q ss_pred cCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 425 SGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 425 ~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
..-+... +...+++.++.+.-+++..++..+..++...+...++
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 5322211 3345889999999999999999999998888766544
No 182
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.27 Score=50.43 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=101.8
Q ss_pred HHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204 273 VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN 351 (559)
Q Consensus 273 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 351 (559)
.+.+++.+.|+-++.....+++---.+.. ..|++..|+.. .++.+..|+..|.-+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 45566777777666665554432111111 12566777777 677788999999999998887554
Q ss_pred CCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH
Q 042204 352 CGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ 431 (559)
Q Consensus 352 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 431 (559)
..+...+++|....++.||...+.+|+-.|+++..+. .+..|-.++.+...-||..|+.+++-+....+++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3456677777665588999999999998888654432 23445555667778899999999988887666554
Q ss_pred HHHHHHcCChHHHHhcCCCC
Q 042204 432 IKYLVREKCIKPLCDLLPCA 451 (559)
Q Consensus 432 ~~~l~~~~~l~~L~~lL~~~ 451 (559)
.... .++++.+.+++..+
T Consensus 657 np~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred ChhH--HHHHHHHHHHHhhh
Confidence 3332 23555666665443
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.84 E-value=0.039 Score=54.12 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=84.2
Q ss_pred ChHHHH-HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH
Q 042204 354 ALPYLL-VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432 (559)
Q Consensus 354 ~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 432 (559)
++..|+ ..+++. ++.+|+.|..+++-.+.-+.+.... .++.+...++.++..++..|+.++..+......+..
T Consensus 27 ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 343433 667888 8999999999999988755543332 466778888778999999999999998764333332
Q ss_pred HHHH-------HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 433 KYLV-------REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 433 ~~l~-------~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
.... ...+++.+...+.+.+++++..+.+++.+++-.+.-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 2222 245678888889999999999999999999876554
No 184
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.83 E-value=0.36 Score=48.78 Aligned_cols=145 Identities=12% Similarity=0.199 Sum_probs=105.8
Q ss_pred CchHHHHHh-cCcHHHHHHhhcCCCC--HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-C---CCHHHHHH
Q 042204 132 SPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-S---PNDDIREQ 204 (559)
Q Consensus 132 ~~~~~~ii~-~g~v~~Lv~lL~~~~~--~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~ 204 (559)
......+++ ..++..|...+++... +.+-..|+.++..+....|..-..+.+.|+++.+++.+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 344555666 5567777777877542 689999999999999989999999999999999999887 4 67788877
Q ss_pred HHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhH------hHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHh
Q 042204 205 AVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL------SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQL 277 (559)
Q Consensus 205 a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~------~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~l 277 (559)
.-.+|+.||-.... .+.+.+.+.+..+++.+....-. +........+-.|.|+.|..+...+..++..+-++
T Consensus 175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l 252 (379)
T PF06025_consen 175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL 252 (379)
T ss_pred HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 88889999877554 56777889999999988433221 34445566777888887666555554444444443
No 185
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.92 Score=46.00 Aligned_cols=268 Identities=13% Similarity=0.097 Sum_probs=140.3
Q ss_pred CCCHHHHHHhh----CCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 184 HGAVPIFVKLL----ASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 184 ~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.|.+..++..+ .+++..++..|+..|+|.+...|. +|.+. .-.+..++.-|.++.+.++.-.+..+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 35555544443 347889999999999999977443 33322 124666777776677788888888888777654
Q ss_pred CCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh---hCCCCCcchhhHHHH
Q 042204 259 MPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL---LGHRSSSVLSPALQT 334 (559)
Q Consensus 259 ~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l---L~~~~~~v~~~al~~ 334 (559)
...... ...-++.-.+..+..+.+++++..+...++.|+.......+.+....+...+..+ +.++++. ...|++.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHH
Confidence 322111 1112333345667778899999999998888874333222222222233333344 3444443 3456666
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH-HHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN-HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
....+.-+-.. +.+. ++++.. ++.. -...+. ..-|++ .+....++....+..+ ...++++.-+.++
T Consensus 410 ~~~~c~p~l~r-ke~~--~~~q~~---ld~~-~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr 476 (533)
T KOG2032|consen 410 ELRTCYPNLVR-KELY--HLFQES---LDTD-MARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIFSSSWEQVR 476 (533)
T ss_pred HHHhcCchhHH-HHHH--HHHhhh---hHHh-HHHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhheecchHHHH
Confidence 66555433211 1111 112211 1110 111111 112211 1222233332222221 1222333333455
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
..|...-.+...+-.+..+.+.-..-+...|..+...+-+++...+..++..+.
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 555544455544434444444333345667777888889999999999988765
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.76 E-value=0.68 Score=46.60 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=100.6
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHH-HHHhccCChhHHHHH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWA-LYFLSNGKNDKIQAV 307 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~-L~~l~~~~~~~~~~~ 307 (559)
+..++..|.+..+...+..|+..|..+|+..+..-+....-++..+++.-.+.++++...|... +.-++...+...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--- 407 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--- 407 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH---
Confidence 4566777755578888999999999999998776666666777777777777777666555544 444444444331
Q ss_pred HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 308 IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 308 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
+..+..++...+...-..++..+..++..-+...-..+-..+.|.+++...+. +..||+.|+++|-.+..
T Consensus 408 -----I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 -----IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 34445555556666666677777777765432211122237889999999999 99999999999987754
No 187
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.76 E-value=0.4 Score=45.07 Aligned_cols=104 Identities=23% Similarity=0.260 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHH
Q 042204 412 IKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLV 490 (559)
Q Consensus 412 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i 490 (559)
....|+..|.-++.- .|.....+.+...+..|+++|. ...+.+...++++|..++-.... ....|
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~-------------N~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE-------------NQRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH-------------HHHHH
Confidence 344566667666554 3455666678889999999994 46789999999999998854432 46789
Q ss_pred HHhccHHHHHHHhcC--CCHHHHHHHHHHHHhhcCCCCCCC
Q 042204 491 EEAEGLEKIENLQSH--ENNEIHEKSVKILETYWCGRVVGP 529 (559)
Q Consensus 491 ~~~g~l~~l~~L~~~--~~~~v~~~a~~il~~~f~~~~~~~ 529 (559)
|+++|+..|..+..+ .+.+++-+...-+--|..++.+..
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~ 213 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI 213 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence 999999999999755 567788888888876766555443
No 188
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.75 E-value=0.26 Score=56.29 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC
Q 042204 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS 325 (559)
Q Consensus 246 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 325 (559)
.++.|+...++...+ -.....+.+..++..+..+...++..|+.||+.+...++.. +....+-..+...+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 345555555554421 12223567777888888888999999999999999777632 2333444556666777888
Q ss_pred cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh
Q 042204 326 SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL 405 (559)
Q Consensus 326 ~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL 405 (559)
.||+.|+..+|..+-..++.... ....+..-+.++ ...||+.+...+..+|..+|+.-. +.+ +...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHh
Confidence 99999999999888877765443 345666777777 889999999999999986554211 111 222233333
Q ss_pred hcCChhHHHHHHHHHHHHhc
Q 042204 406 QNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 406 ~~~~~~v~~~a~~aL~nl~~ 425 (559)
.+++..+++-+...+.++-.
T Consensus 941 ~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhc
Confidence 34444588888888887754
No 189
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.74 E-value=1.2 Score=41.05 Aligned_cols=138 Identities=10% Similarity=0.196 Sum_probs=99.8
Q ss_pred hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC----CchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHH
Q 042204 328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS----HKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLI 402 (559)
Q Consensus 328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li 402 (559)
...|+..+..++++.+ ....++++.+--.|...|... ..+-+|-.+..+|+.+.. ++.+.+..++..+++|..+
T Consensus 96 VcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3456777777777655 445677777766666666432 256788999999999987 6777888889999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH--------cCChH-HHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 403 NLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR--------EKCIK-PLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 403 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--------~~~l~-~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
+.+..++...+..|..++..+..+.. ...|+.+ ..++. .+..+.+.+++++..+++.+..++.+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~--GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDV--GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccc--cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999887532 2222211 11233 33445577889999999998888653
No 190
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.56 Score=49.83 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=112.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ 266 (559)
Q Consensus 187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 266 (559)
+..+..+|.+.++.++-.|+.+|.+++.+....+. +...+++++.+..+..++--.+--|+.+.. .....
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence 34455556555666666666665555443222111 234455555443444444333334444431 12233
Q ss_pred HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 345 (559)
..+.+--++.+|.++|-+++..++.....|+...+ +.+-.++...+...--. =...+.+.|..-+++|...+..-++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 45566667778889999999999998888874433 11111111111110000 00122345677777777776655544
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-CChhHHHHHHHHHHHHh
Q 042204 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-AEINIKNWAAWAISNAT 424 (559)
Q Consensus 346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~ 424 (559)
.. .+++.|++.+.+. ++.........+.......|..... ++..|+.-+.. ...++-+-|+|.++..+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 33 5678888888777 5544444444444443333332222 34444444322 34566677777777766
Q ss_pred cC
Q 042204 425 SG 426 (559)
Q Consensus 425 ~~ 426 (559)
..
T Consensus 463 e~ 464 (948)
T KOG1058|consen 463 EG 464 (948)
T ss_pred hh
Confidence 54
No 191
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.68 E-value=0.42 Score=44.92 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ 235 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l 235 (559)
..+...|+++|.-++--++..+..+.+...+..|+.+|. ...+.++..++.+|..+..++|.+...+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345667889999988889999999999999999999995 4678999999999999999999988889999999999999
Q ss_pred hchh-hhHhHHHHHHHHHHHhhcC
Q 042204 236 LNEH-AKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 236 l~~~-~~~~~~~~a~~~L~nL~~~ 258 (559)
++.. .+.+++-.++.+|.-....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 9643 3566666666666655443
No 192
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.67 E-value=0.85 Score=45.93 Aligned_cols=184 Identities=11% Similarity=0.128 Sum_probs=108.7
Q ss_pred HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 309 (559)
++.-+..+...+-+..|..-|..+........ ......++-.+++.|.+ .++.++.-|++.|..++.+.+.....-.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 33333333334445555554444433332222 22345667777888876 67888999999999999776644322222
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHH-HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQT-IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NRE 387 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 387 (559)
. ++..+++.-.+..+.+...|... +.-+++..+.+. +..+..++... +...-..+...+..++.. +.+
T Consensus 371 ~-ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 371 I-AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred H-HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHH
Confidence 1 34455555555555555544444 444444444332 33344445444 554555555566666652 444
Q ss_pred HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 388 QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 388 ~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
....++. .+.|.+++...+.+..||+.|+++|..+...
T Consensus 441 eL~~ll~-diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 441 ELLNLLP-DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHhhh-hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 4444444 4999999999999999999999999988753
No 193
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.63 E-value=0.018 Score=34.73 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 4799999999999 9999999999999986
No 194
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.62 E-value=0.015 Score=35.08 Aligned_cols=29 Identities=34% Similarity=0.681 Sum_probs=25.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhC
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAG 214 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 214 (559)
++|.++++++++++++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999974
No 195
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.60 E-value=1.1 Score=49.24 Aligned_cols=198 Identities=17% Similarity=0.233 Sum_probs=117.3
Q ss_pred HHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCC-hHHHHHHhcCCCchh
Q 042204 292 ALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGA-LPYLLVLLIHSHKKS 369 (559)
Q Consensus 292 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~-l~~L~~lL~~~~~~~ 369 (559)
++.+++...++....+++.+++..+...+.. ....++..++..++|++..............+ ...+..++..-...+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888888899999999999999999886 45678899999999999755332211111100 123333443331335
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHhcC
Q 042204 370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKP-LCDLL 448 (559)
Q Consensus 370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL 448 (559)
.-..|+..|+.+...+++.. ..+. -..+......++........ .. .....+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~----~~~~-----------r~~~~~~l~e~i~~~~~~~~----~~-~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT----ECVF-----------RNSVNELLVEAISRWLTSEI----RV-INDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc----cccc-----------hHHHHHHHHHHhhccCccce----ee-hhhhhcchhHHHHh
Confidence 55666666666655322210 0101 11122222223333322211 11 11122333 44444
Q ss_pred -CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhc
Q 042204 449 -PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYW 522 (559)
Q Consensus 449 -~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f 522 (559)
.+..+..+..|++++.++++.... ++..+.+.|++..++++-.+ .-.++.+.+..+++.+.
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 345677788999999998865322 68889999999999998433 36667778888877654
No 196
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.54 E-value=0.37 Score=50.60 Aligned_cols=144 Identities=21% Similarity=0.164 Sum_probs=108.2
Q ss_pred CcHHHHHHhhcC----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCC
Q 042204 142 GVVPRFVEFLMR----EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDS 216 (559)
Q Consensus 142 g~v~~Lv~lL~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~ 216 (559)
.+-|.+.+...+ ++ +.+|..|.-+|..+..-+.+... .-+|.|+..+. +++|.+|.+|+..|+.++-.-
T Consensus 892 ~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 355666666665 45 89999999999987764444433 35799999887 799999999999999886432
Q ss_pred chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204 217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL 296 (559)
Q Consensus 217 ~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 296 (559)
....+. .-..|.+.| .+.+..++++++.++.+|.-.. +..+.|-++.++.+|.++|.++..-|-..+..+
T Consensus 966 N~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 966 NTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 222121 245666777 6778899999999999987654 344578889999999999999998888888888
Q ss_pred ccCCh
Q 042204 297 SNGKN 301 (559)
Q Consensus 297 ~~~~~ 301 (559)
+..++
T Consensus 1036 a~KdN 1040 (1128)
T COG5098 1036 AKKDN 1040 (1128)
T ss_pred Hhccc
Confidence 85544
No 197
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.42 E-value=0.5 Score=47.59 Aligned_cols=274 Identities=17% Similarity=0.141 Sum_probs=139.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHH-HHHhCCCchhhh
Q 042204 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWAL-GNVAGDSPRCRD 221 (559)
Q Consensus 144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~r~ 221 (559)
+..++.-|.+.....+|..++--|+.-+. +++.+..+..+|.++.+++.+.. ++..+...+..++ .-++.+.+. -+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence 45566666644446899999999998888 89999999999999999999955 3332444444444 344444332 33
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHh-hHhchHHHHHHhhc---------cCCHhHHHHHHH
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFE-QVRPALPVLAQLVH---------SNDKEVLTDACW 291 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~---------~~d~~v~~~a~~ 291 (559)
.+...+....++.++.-........... .. ...... .....+..+.+.+. .....-+.-++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 3334445555566663000000000000 00 000000 00111111111110 011122333333
Q ss_pred HHHHhc--------------cCChhHHHHHHHhCcHHHHHHhhC----CC-------CC-----cchhhHHHHHHHhhcC
Q 042204 292 ALYFLS--------------NGKNDKIQAVIEAGVCPRLVELLG----HR-------SS-----SVLSPALQTIGHIVAG 341 (559)
Q Consensus 292 ~L~~l~--------------~~~~~~~~~~~~~g~l~~L~~lL~----~~-------~~-----~v~~~al~~L~nl~~~ 341 (559)
++-.++ ...+...+.+.+.|++..++.++. .. .+ .....++++|-+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 333331 111223345666788888888875 11 11 1345578888888766
Q ss_pred ChHHHHHHHhC--CChHHHHHH-hcCC--CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh-------h---
Q 042204 342 DDFQTQCIINC--GALPYLLVL-LIHS--HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL-------Q--- 406 (559)
Q Consensus 342 ~~~~~~~~~~~--g~l~~L~~l-L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL-------~--- 406 (559)
+.......+.. +.++.+... +... ....+...++..+.|++-.+++....+...++...+..+. .
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 65433334332 333333333 2222 0234456788999999887777666665443322222111 1
Q ss_pred ----cCChhHHHHHHHHHHHHhcCC
Q 042204 407 ----NAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 407 ----~~~~~v~~~a~~aL~nl~~~~ 427 (559)
....++..-++.++.|++...
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeC
Confidence 113456677777777877653
No 198
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.36 E-value=2.6 Score=46.65 Aligned_cols=239 Identities=15% Similarity=0.177 Sum_probs=139.2
Q ss_pred hchHHHHHHhhcc-----CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC----CCC----CcchhhHHHH
Q 042204 268 RPALPVLAQLVHS-----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG----HRS----SSVLSPALQT 334 (559)
Q Consensus 268 ~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~~~----~~v~~~al~~ 334 (559)
.+++..++.++.+ .+.+....++..|.+.+.. ....+.+++.|.++.|+..+. ... ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3456666666643 3456677778888887755 445678888999999888764 333 5566777777
Q ss_pred HHHhhcCChHHHHHH----HhC--------CChHHHHHHhcCC---CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204 335 IGHIVAGDDFQTQCI----INC--------GALPYLLVLLIHS---HKKSIKNHACWTISKITAGNREQIQAVIDAGLIG 399 (559)
Q Consensus 335 L~nl~~~~~~~~~~~----~~~--------g~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~ 399 (559)
+..+........... ... .-+..|++.+.++ .++.+....+.+|-+++.|+++..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 777665333211100 111 1255666666544 157888999999999999999999998874 23
Q ss_pred HHHHHhhcC--ChhHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHhcCCCC--------ChH--------HH
Q 042204 400 PLINLLQNA--EINIKNWAAWAISNATSGG-----SHEQIKYLVREKCIKPLCDLLPCA--------NPT--------IV 456 (559)
Q Consensus 400 ~Li~lL~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~--------d~~--------v~ 456 (559)
..+++=.-+ ...--...+..++.++.+- .......+++.|++...+++|... +++ -.
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333322111 0000022355555555432 134566778899998888877321 121 23
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhcC
Q 042204 457 TVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYWC 523 (559)
Q Consensus 457 ~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f~ 523 (559)
..+|..|.-+.... .-.+.+...+++..+..|-+. ....|=..|-++|+.+-.
T Consensus 353 p~iL~lL~GLa~gh--------------~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 353 PYILRLLRGLARGH--------------EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHhcC--------------HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 44555555444321 123334456677777777433 355666677777765544
No 199
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.32 E-value=0.2 Score=43.77 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=96.7
Q ss_pred CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH-HcCCHHH
Q 042204 322 HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI-DAGLIGP 400 (559)
Q Consensus 322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li-~~~~i~~ 400 (559)
...+.+|..++-++..+- +...+ -....+-+.+...+... ..+-...++.+++.+..+.++....++ ..|+++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 356778888888888874 22222 22223445666666666 666788889999999888888888777 6788999
Q ss_pred HHHHhh--cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChH-HHHHHHHHHH
Q 042204 401 LINLLQ--NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPT-IVTVCLKGLE 464 (559)
Q Consensus 401 Li~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~-v~~~~l~~l~ 464 (559)
+..++. ..+..++..++.+|..-+.. +.++..+...+++.|.++++ +++.. ++..++-+|.
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 999998 77889999999999988774 44555566678999999995 45555 6666666554
No 200
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.24 E-value=8.1 Score=44.93 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+..++..|..+...++-.|+++|..+...+..-.....++.++..+ +.++. ..+|+.|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 45677778888888999999999999887642222333344444333 33444 79999999999987765665544
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc--hhhhHhHHHHHHHHHHHhhc
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN--EHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~--~~~~~~~~~~a~~~L~nL~~ 257 (559)
... ..+..-+.++...||..++..+..+|...|.+-.. .....++|. .+....+..-++.++.++..
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 433 34555556678899999999999999888775322 233444443 33444588889999999987
Q ss_pred CC
Q 042204 258 GM 259 (559)
Q Consensus 258 ~~ 259 (559)
.+
T Consensus 961 ~p 962 (1692)
T KOG1020|consen 961 TP 962 (1692)
T ss_pred cC
Confidence 76
No 201
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.15 E-value=2.5 Score=42.02 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=111.6
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhc-CChHHHHHHHhC-C-ChHHHHHHhcCCC----c--------hhHHHHHHHH
Q 042204 313 CPRLVELLGHRSSSVLSPALQTIGHIVA-GDDFQTQCIINC-G-ALPYLLVLLIHSH----K--------KSIKNHACWT 377 (559)
Q Consensus 313 l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~-g-~l~~L~~lL~~~~----~--------~~v~~~a~~~ 377 (559)
++.+...|......+..++++.|..++. ........+... . -.+.+..++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6888888998888888999999999999 555566666543 1 2334555553220 1 2788887765
Q ss_pred HHHh-hcCCHHHHHHHHH-cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC---HHHHHHHHHcCChHHHHhcCCCCC
Q 042204 378 ISKI-TAGNREQIQAVID-AGLIGPLINLLQNAEINIKNWAAWAISNATSGGS---HEQIKYLVREKCIKPLCDLLPCAN 452 (559)
Q Consensus 378 L~nl-~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~l~~L~~lL~~~d 452 (559)
+..+ ..+++.....+++ .+.+..+.+-|..+++++...++.++..-..... +.....+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 5444 4477777777774 5678888888888889999999999985443321 334444556677889999888777
Q ss_pred h----HHHHHHHHHHHHHHHh
Q 042204 453 P----TIVTVCLKGLENILKV 469 (559)
Q Consensus 453 ~----~v~~~~l~~l~~il~~ 469 (559)
+ .+...+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 8888888888887743
No 202
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.07 E-value=0.27 Score=43.10 Aligned_cols=146 Identities=11% Similarity=0.088 Sum_probs=88.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
+++.|.++|+.+..+.+|.+++++|+.|..-+|...+.+.... +.-. -...+.......... .++ .+. -+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~-~~~---~~~-~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPM-MGI---SPS-SEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhh-ccC---CCc-hHH
Confidence 6788899998876699999999999999886665554322211 1000 011111122211111 111 111 122
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
..-..++..|++.|++..-..-...++.++.++..............++|.++..++..++..++...+-|+.|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222335778888885444444455677777777755444556777889999999998777788887777776654
No 203
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.94 E-value=0.59 Score=49.44 Aligned_cols=226 Identities=12% Similarity=0.136 Sum_probs=146.0
Q ss_pred HhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204 267 VRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
...++|.|+..+...+ ..++...+..-..+. ..+ ...+++|.|++++...+..+|..-+.-+-+... .
T Consensus 291 ~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~ 360 (690)
T KOG1243|consen 291 ASKVLPILLAALEFGDAASDFLTPLFKLGKDLD-EEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---H 360 (690)
T ss_pred HHHHHHHHHHHhhccccchhhhhHHHHhhhhcc-ccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---h
Confidence 3556677666665444 334444333333332 222 445789999999999999998777776666654 3
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
..+.+++..++|.+...+.+. ++.+|..++.++.-++.- +.. .+...++..|-++-.+.+..+|.....+++.+
T Consensus 361 Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 361 LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh----hhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 445677889999999999999 999999999999888752 222 12222444454444456778888888888888
Q ss_pred hcCCCHHHHHHHHHcCC-hHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHH
Q 042204 424 TSGGSHEQIKYLVREKC-IKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL 502 (559)
Q Consensus 424 ~~~~~~~~~~~l~~~~~-l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L 502 (559)
...-.+.. ..++ ..++..-++++-..-+...+.++..--+.-+ .+..+.. .++.+.-+
T Consensus 436 ~~~l~~~~-----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-----------~~~va~k-----Ilp~l~pl 494 (690)
T KOG1243|consen 436 APHLAASV-----RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-----------QSEVANK-----ILPSLVPL 494 (690)
T ss_pred ccccchhh-----hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-----------hhhhhhh-----cccccccc
Confidence 77533322 3333 3455555555555556666666654332211 1223333 35777788
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCC
Q 042204 503 QSHENNEIHEKSVKILETYWCGRVVG 528 (559)
Q Consensus 503 ~~~~~~~v~~~a~~il~~~f~~~~~~ 528 (559)
.-+++..++..|...++.|....+..
T Consensus 495 ~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 495 TVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccCcccchhhHHHHHHHHHHhhhhhh
Confidence 88899999999999999988754433
No 204
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.91 E-value=0.76 Score=50.68 Aligned_cols=197 Identities=12% Similarity=0.066 Sum_probs=133.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ 266 (559)
Q Consensus 187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 266 (559)
.+.+..-+.+++..-|..|+..+.-+..... ........+.+..++.....+.+..+...++.+|..++..-.......
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3445555566777777788888887765433 111112234455566666677888899999999999998775555566
Q ss_pred HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-H
Q 042204 267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-Q 345 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~ 345 (559)
...++|.+++-+......++..+..++-.++.... -..+.+.+...+++.++.++..+...+.......+. .
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 67888999999888888777766666655543211 113568889999999999999988888777665441 1
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHH
Q 042204 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAV 392 (559)
Q Consensus 346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l 392 (559)
...-.-.++++.++....+. +.+||..|..+++-+.. .....+..+
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11111226788888888888 99999999988887765 334434333
No 205
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.89 E-value=0.8 Score=42.90 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhhcC-----ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHH
Q 042204 384 GNREQIQAVIDAGLIGPLINLLQNA-----EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458 (559)
Q Consensus 384 ~~~~~~~~li~~~~i~~Li~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~ 458 (559)
..++....++++++.-.|..+|... -..+|-.++..++.++..++++.+.++.+.++++.....++..+.-....
T Consensus 79 shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtv 158 (262)
T PF04078_consen 79 SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTV 158 (262)
T ss_dssp H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHH
T ss_pred cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHH
Confidence 4578888899999877777777644 24688999999999999999999999999999999999999888877888
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
|...+.+|+..+....-... ..+.+.....-.| ..+..+...+++.+-+....+..+..
T Consensus 159 AtfIlqKIL~dd~GL~yiC~---t~eRf~av~~vL~--~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 159 ATFILQKILLDDVGLNYICQ---TAERFFAVAMVLN--KMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHHHSHHHHHHHTS---SHHHHHHHHHHHH--HHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcchhHHHHHhc---CHHHHHHHHHHHH--HHHHHHccCCChhHHHHHHHHHHHHc
Confidence 99999999976654332111 1122222222111 34456677888888776555554443
No 206
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.86 E-value=0.25 Score=36.58 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 042204 371 KNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-AEINIKNWAAWAISNATSGGSHEQIKYLVREK 439 (559)
Q Consensus 371 ~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 439 (559)
.|.|.|+++++++ ++..++.+.+.++++.++++... +...+|-.|.++|+-++. +.+-.+.|.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 5789999999975 46667777778999999999875 467899999999998887 667777666655
No 207
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.77 E-value=0.77 Score=47.12 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=130.4
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204 181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
.++...+..|+.++.++++.-|+.....|.++-+..+..|..+.. .....+.+.+.......-...++..+..+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 445567888999999999999999999999988766666666533 3445556666445555666778888888888764
Q ss_pred CCc-HhhHhchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 261 RPI-FEQVRPALPVLAQLVHSNDK-EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 261 ~~~-~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
.+. .+...-....++.|.+.+.- ........++......++.....+ +..++..=-..+..-...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 333 33333444556666655432 223444444444444444333222 22233322223333333445556666
Q ss_pred hcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC---CHHHHHHHhhcC-----C
Q 042204 339 VAGDD-FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG---LIGPLINLLQNA-----E 409 (559)
Q Consensus 339 ~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~---~i~~Li~lL~~~-----~ 409 (559)
...-+ .....+. ..+...+...+.++ +..|.+.|+....| + .+-.++... ++|.+...|... +
T Consensus 283 l~~~~~~~f~~i~-~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 283 LEVLPPEEFQKIM-VPLFKRLAKCISSP-HFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HTT--HHHHHHHH-HHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHhcCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 55333 2222222 24567788888888 88888888765532 2 223333322 577777766431 4
Q ss_pred hhHHHHHHHHHHHHhcC
Q 042204 410 INIKNWAAWAISNATSG 426 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~ 426 (559)
..++..|..++.-+...
T Consensus 355 ~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEM 371 (409)
T ss_dssp TTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67888887777776664
No 208
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.60 E-value=0.95 Score=49.96 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=128.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
+.+-..+.+.++..+.+|+..+...++... ....-...|.+-.++.....+.+..+...|+.+|..|+......-..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~- 332 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK- 332 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-
Confidence 344556678999999999999999887642 11111234556666666555555889999999999999865444222
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP- 260 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~- 260 (559)
...++.|.++..+......+++.+..++-.++...+. ....+.++..+ .+.++..+..+...+....+...
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 2247889999999998899998888777777653222 11345566666 66677777665544544444332
Q ss_pred -CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 261 -RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 261 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
......+..++|.++...++.+.+|+..+..+++-+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23344567889999999999999999999999887763
No 209
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.52 E-value=4.2 Score=39.01 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=128.7
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh----hhhccCCHHHHHHHhchhhh-HhHHHHHHHHHH
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD----LVLSEEALIPLLAQLNEHAK-LSMLRTATWTLS 253 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~----~i~~~g~l~~Ll~ll~~~~~-~~~~~~a~~~L~ 253 (559)
..+.++|.+..|++.+..-+-+-+..++....|+-...-..|. .+... ...+-.++....+ +++.-++...|.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~--~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN--PEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC--HHHHHHHHhhhccchHHHHHHHHHHH
Confidence 4566789999999999988888888899998888643322222 11111 1222222322121 344444444444
Q ss_pred HhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCc----HHHHHHhhCCCCCcchh
Q 042204 254 NFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGV----CPRLVELLGHRSSSVLS 329 (559)
Q Consensus 254 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~v~~ 329 (559)
...+...-........-+......++.+.-++..+|..+...+.......+..+..... .+.--.++.+.+--.+.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 44443222222222445555666667777788999999988887554444444444432 33356677888888899
Q ss_pred hHHHHHHHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 330 PALQTIGHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 330 ~al~~L~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
.++..+|.+.-+... .++.+-...-+..++.+|+.+ +..+|-+|....--..+
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 999999998765442 444555557789999999999 99999999988877766
No 210
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=6.7 Score=40.09 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=141.8
Q ss_pred ccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCC
Q 042204 225 SEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 225 ~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
+.|.+..++..+. .+++..++..|+..|.|...+.|..........+..++.-| ...+.+|...+..+|..+....
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 3444444444432 34566788999999999999977666666666666655555 4457889999998888877432
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-----HHHHHHhCCChHHHHHHhcCCCchhHHHHHH
Q 042204 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-----QTQCIINCGALPYLLVLLIHSHKKSIKNHAC 375 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-----~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~ 375 (559)
....-.-.--.+.-.+..+..+.+++.|..|...+|.++..... .++.+. +....|+-.|+++ .+.+ ..||
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~--k~~~~lllhl~d~-~p~v-a~AC 407 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVK--KRLAPLLLHLQDP-NPYV-ARAC 407 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHH--hccccceeeeCCC-ChHH-HHHH
Confidence 21110111113445677778889999999999888887643221 222122 2334455556665 5544 3456
Q ss_pred HHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH-HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204 376 WTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK-NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT 454 (559)
Q Consensus 376 ~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~-~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 454 (559)
......+..+ -..+.+. ++++...+... ...+ -..-|++. +. .-.++..-++. ....-++++.-+.
T Consensus 408 r~~~~~c~p~-l~rke~~--~~~q~~ld~~~---~~~q~Fyn~~c~~-L~-~i~~d~l~~~~-----t~~~~~f~sswe~ 474 (533)
T KOG2032|consen 408 RSELRTCYPN-LVRKELY--HLFQESLDTDM---ARFQAFYNQWCIQ-LN-HIHPDILMLLL-----TEDQHIFSSSWEQ 474 (533)
T ss_pred HHHHHhcCch-hHHHHHH--HHHhhhhHHhH---HHHHHHHHHHHHH-Hh-hhCHHHHHHHH-----HhchhheecchHH
Confidence 6665554321 1111111 12222211100 0111 11112111 11 11233333322 2222334444455
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 455 IVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 455 v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
++..+...-.+.... -...++.....+-....+..|-..+-+++...|...++..
T Consensus 475 vr~aavl~t~~~vd~------------l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 475 VREAAVLKTTRSVDS------------LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL 529 (533)
T ss_pred HHHHHHHHHHHHHHH------------hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence 555555444443321 1223455555555567777888899999999998888754
No 211
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.40 E-value=0.26 Score=36.47 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=51.3
Q ss_pred hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204 328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG 396 (559)
Q Consensus 328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~ 396 (559)
.+.|+|+++++++.+ .....+.+.++++.++++..+.+...+|-.|.++|+-++. +.+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 467999999998844 4455566679999999999866588999999999998864 566555555443
No 212
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=0.57 Score=49.51 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=81.7
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
.|.+..+++...+++ ..+|+..+.+|..+.. .....+..+-.+....+..-+.+..+.||.+|+.+|+.+-++.-.
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-- 159 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--
Confidence 457777888888888 7999999999999988 344445555567778888878888899999999999999754322
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~ 253 (559)
-+..+...+..++..+++.++++.++..+.
T Consensus 160 ---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 ---EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 133467888899988999999998765443
No 213
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=9.1 Score=41.19 Aligned_cols=299 Identities=16% Similarity=0.084 Sum_probs=160.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--------CCHHHHHHHHHHHHHHhC--CCchhhhhhhccCCHHH
Q 042204 162 EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--------PNDDIREQAVWALGNVAG--DSPRCRDLVLSEEALIP 231 (559)
Q Consensus 162 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~r~~i~~~g~l~~ 231 (559)
.|+.++..+.+...+.+ + .|+++.+...|.. .++.-.+.|++.++++.. ..+....-+.+.=+++.
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 45666666665333222 2 4889999998832 244556788888888864 22211112222222333
Q ss_pred HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhC
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAG 311 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 311 (559)
++..+ +++..-++..+|.+++.+..+-+ .......+......++++++-.|+..|.-|+..+..+. +....+.+.
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeDfk--d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah 539 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEEDFK--DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH 539 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence 33333 44555567789999998854433 23334556666677788888889999988988877544 233333333
Q ss_pred c---HHHHHHhhCCCCCcchhhHHHHH-HHhhcCChHHHHHHHh---CCChHHHHHHhcCCCc-----hhHHHHHHHHHH
Q 042204 312 V---CPRLVELLGHRSSSVLSPALQTI-GHIVAGDDFQTQCIIN---CGALPYLLVLLIHSHK-----KSIKNHACWTIS 379 (559)
Q Consensus 312 ~---l~~L~~lL~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~~---~g~l~~L~~lL~~~~~-----~~v~~~a~~~L~ 379 (559)
+ ++.|+.+-+.-+..+...++..+ +..+..-......+.. ...+.....++.++++ .+=+-.|...|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 3 33344433333333333333322 2222111111111111 1223333344433211 122333445554
Q ss_pred Hhhc------CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204 380 KITA------GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP 453 (559)
Q Consensus 380 nl~~------~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~ 453 (559)
.+.. ..+...+.+. ....|..--+|++.-.+.-.+|+..+-+.+-. ..+. .. +.-|+.+.+.+++.+.+.
T Consensus 620 T~~smiLSlen~p~vLk~le-~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI-~p-imwgi~Ell~~~l~~~~t 695 (970)
T COG5656 620 TIESMILSLENRPLVLKYLE-VSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEI-EP-IMWGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHhcccchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHh-hh-hhhHHHHHHHhcccccch
Confidence 4432 2344334333 33566665566777778888888888776653 1121 11 234677888888887775
Q ss_pred -HHHHHHHHHHHHHHHhhhhh
Q 042204 454 -TIVTVCLKGLENILKVGEAE 473 (559)
Q Consensus 454 -~v~~~~l~~l~~il~~~~~~ 473 (559)
.-...+..++.|++.+|.+.
T Consensus 696 ~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 696 AVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhHHHHHHHHHHHHHhCccc
Confidence 56777888999999988553
No 214
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.45 Score=48.90 Aligned_cols=130 Identities=25% Similarity=0.321 Sum_probs=95.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL-LASPNDDIREQAVWALGNVAGDSPRCRDLVLS 225 (559)
Q Consensus 147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 225 (559)
+-+++.+.+ +-+|...+..++.--.++. ..|++..|+.. .++.+.++|+.|+.+|+-+|.+++.
T Consensus 521 I~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 521 INELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 344555556 6777777766654433332 24678888887 6778999999999999999977654
Q ss_pred cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204 226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 226 ~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 299 (559)
.+...+.+|..+.+..++...+.+|.-.|.+.-. ..++..|-.++.+...-|+..|+-+++.+...
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 3566777787777888888888889888887521 23455666777888889999999999887743
No 215
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.20 E-value=8.5 Score=40.36 Aligned_cols=286 Identities=13% Similarity=0.103 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204 114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL 193 (559)
Q Consensus 114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 193 (559)
..+..|+..++..+..-+-.++.. +....-.++.....++.|..+...|..++.+......... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHH
Confidence 456667777776655421211111 2233334555554467888888888888885443211111 112222
Q ss_pred hC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh--------------------------hHhHHH
Q 042204 194 LA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--------------------------KLSMLR 246 (559)
Q Consensus 194 L~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~--------------------------~~~~~~ 246 (559)
+. ...++--..-+.+|..++.++... + ..+.+..+.+...+.... +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 22 233433445556666666555443 1 134555566665552111 122333
Q ss_pred HHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhC
Q 042204 247 TATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLG 321 (559)
Q Consensus 247 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~ 321 (559)
..+..+.|+.+.. .......+.+++..++.+.. +.++.....++..+-.+... +.+... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 3444455555544 22333444555555554432 23333334444444333321 111111 1233344432
Q ss_pred CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-----CchhHHHHHHHHHHHhhcCCHHHHHHHHH-c
Q 042204 322 HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-----HKKSIKNHACWTISKITAGNREQIQAVID-A 395 (559)
Q Consensus 322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~ 395 (559)
........+-+++.|++...-.+ ..+..|..+|.++ .+..+-+.|...+..+..+..++...-+. .
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 23367778889999998744322 1345677777322 14456678888888887764222221121 1
Q ss_pred --CCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 396 --GLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 396 --~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
-+++.|...++.++..+-.+++..+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 278888888988888888888888888873
No 216
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.18 E-value=1.5 Score=44.23 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=77.4
Q ss_pred CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC------CCCCcchhhHHHHHHHhhcCChH-----------
Q 042204 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG------HRSSSVLSPALQTIGHIVAGDDF----------- 344 (559)
Q Consensus 282 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~~----------- 344 (559)
...-+..|+..+..++.........++ ...+..+|. +.++.-+..|++.++.++.....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 345678888888888854333322222 122333332 24556777899999999875532
Q ss_pred -HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHH
Q 042204 345 -QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420 (559)
Q Consensus 345 -~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL 420 (559)
....+....++|-|. -=.+. .|-+|..|++.+..+-.. ++++ +. +++|.+++.|.+++.-|...|+.+|
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~~~---l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPKEQ---LL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-HHH---HH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCHHH---HH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 123344445556555 11133 678999999999988653 3332 22 2789999999999999999998875
No 217
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.17 E-value=1.7 Score=43.82 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=127.2
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH-HhhcCCCCCcH
Q 042204 187 VPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS-NFCRGMPRPIF 264 (559)
Q Consensus 187 i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~-nL~~~~~~~~~ 264 (559)
+..++.-+. +.+..+|..++--|+.-+.+ +.+|..+..+|....+++.+....+......++.++. -++++.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 445555444 35567888888888888765 6789999999999999999955544434444444444 44444444443
Q ss_pred hhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC---------CCCCcchhhHHHH
Q 042204 265 EQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG---------HRSSSVLSPALQT 334 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~---------~~~~~v~~~al~~ 334 (559)
......+..+..++..+ ...+..... . .......... ...+..+.+.+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33455666666666511 000000000 0 0000011111 112222222221 2233456778888
Q ss_pred HHHhhcC-----C---------hHHHHHHHhCCChHHHHHHhcC----CC------c-----hhHHHHHHHHHHHhhcCC
Q 042204 335 IGHIVAG-----D---------DFQTQCIINCGALPYLLVLLIH----SH------K-----KSIKNHACWTISKITAGN 385 (559)
Q Consensus 335 L~nl~~~-----~---------~~~~~~~~~~g~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~ 385 (559)
+-.++.. + +...+.+...|++..++.++.. .. . ...-..+..+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 8777411 1 1123445566889999998852 10 1 112244677777877655
Q ss_pred HHHHHHHHHc--CCHHHHHHH-h---hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 386 REQIQAVIDA--GLIGPLINL-L---QNAEINIKNWAAWAISNATSGGSHEQIKYLVR 437 (559)
Q Consensus 386 ~~~~~~li~~--~~i~~Li~l-L---~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 437 (559)
.++..+++.. +.++.+... + ...-.++...++..+.|++.+ ++..+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s 310 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFAS 310 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhh
Confidence 5555555532 233333222 2 222345567888889999876 4444444433
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.12 E-value=5.8 Score=42.49 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=90.5
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 389 (559)
..++|.|..-+++.+..++..++..+..++..-+. ..+..-++|.+..+.....+..++..++-++.-++. .+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence 35788888889999999999999999999876652 345557788888876444388889888888887761 12
Q ss_pred HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 042204 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN 452 (559)
Q Consensus 390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d 452 (559)
....--..+..+....+..++.+......+..++..... .. ..++...+++.++.+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhccc
Confidence 211111235555666667788888888877777765422 11 23344567777777665443
No 219
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.27 Score=46.75 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=97.7
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV 392 (559)
Q Consensus 313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 392 (559)
+...+..|.+.++.....++..|..++....+.....+. .++-.+++-+++. ...|-+.||.+++.|...-.+.+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788889999999999999998876654433333 4556667777788 88999999999999986433433332
Q ss_pred HHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 393 IDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 393 i~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
.+. .+..|..--...+.-++..|-.+|..++.+..|.. +++.|...+.+..+.++..+...+.+..
T Consensus 168 ld~-lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDD-LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH-HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 221 22222221123345688999999999998776654 4666777778888888777666555433
No 220
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.06 E-value=7 Score=38.89 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=118.3
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHc-CC-HHHHHHHhhcC-----C--------hhHHHHHHH
Q 042204 355 LPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDA-GL-IGPLINLLQNA-----E--------INIKNWAAW 418 (559)
Q Consensus 355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~-~~-i~~Li~lL~~~-----~--------~~v~~~a~~ 418 (559)
++.+...|.+. ...+...+...+..++. ........+... ++ .+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888889888 78888899999999998 666777777643 22 44555555321 1 289999999
Q ss_pred HHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204 419 AISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE 497 (559)
Q Consensus 419 aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 497 (559)
.+..+...+++.....+++ .+.+..+..-+..++++++..++..|..-+-.+...+ ......+-....+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~---------r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVS---------RSTKCKLFNEWTLS 207 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC---------hhhhhhhcCHHHHH
Confidence 9988888888888777765 5678888888888888999999999986443332221 12344444566788
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHhhcCC
Q 042204 498 KIENLQSHENN----EIHEKSVKILETYWCG 524 (559)
Q Consensus 498 ~l~~L~~~~~~----~v~~~a~~il~~~f~~ 524 (559)
+|..|-...++ .+.+.+...+..++..
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 99998888888 8999999999887753
No 221
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.94 E-value=3.1 Score=43.30 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 264 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 343 (559)
...+.+.+..++..+.++|..|+..+|..|..+++.-.+ +...+-.|++..|.+.+-+.++.||..|+.+|..+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456677888888888899999999999999999865443 4566667889999999999999999999999988754322
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI 378 (559)
Q Consensus 344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L 378 (559)
.--. .+...|..+++++++.+||+.|..-+
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1111 23346777787766888988775443
No 222
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.93 E-value=0.93 Score=39.62 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=92.8
Q ss_pred cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHH-hCCChHHH
Q 042204 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCII-NCGALPYL 358 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~g~l~~L 358 (559)
...++++..+.-++..+.+.. +.-...-+-+.+-.++...+..-...++.++..+-.+.+.....++ ..|+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 456778888888888774222 2222222344555566666666777889999999888887655555 66999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-CChh-HHHHHHHHHHH
Q 042204 359 LVLLI--HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-AEIN-IKNWAAWAISN 422 (559)
Q Consensus 359 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~-v~~~a~~aL~n 422 (559)
..+.. .. +..++..++.+|+.-| .+ +.++..+...+++.|-+.++. ++.. ++..|+-+|+.
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc-~d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAAC-ID-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHT-TS-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHH-cc-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 99998 55 8888888888887664 33 444555555589999999964 4555 78888777764
No 223
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.93 E-value=5.1 Score=43.87 Aligned_cols=196 Identities=16% Similarity=0.116 Sum_probs=107.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHHHHhCCCch
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS----PNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
.+..+.+++.... --..+|++.|..+......-... .+..+..++.+ .++.++..|+.+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4555666666644 22344566666665533233333 34556666664 5678888899888888632111
Q ss_pred ---------hhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC---CH
Q 042204 219 ---------CRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN---DK 283 (559)
Q Consensus 219 ---------~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~---d~ 283 (559)
..........++.+...+. ...+..-+..++.+|.|+-. ...++.+..++... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 0111222335667777764 22345667778899999854 34677788877655 67
Q ss_pred hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361 (559)
Q Consensus 284 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l 361 (559)
.++..|+++|..+....++.+ .+.+..++.+. +.++|..|+.+|.. .++.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence 899999999999876666443 35566666553 45577777766543 22222 225566677
Q ss_pred hcCCCchhHHHH
Q 042204 362 LIHSHKKSIKNH 373 (559)
Q Consensus 362 L~~~~~~~v~~~ 373 (559)
+....+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 765535555543
No 224
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.69 E-value=4.9 Score=37.74 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=115.0
Q ss_pred HHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHh
Q 042204 187 VPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFE 265 (559)
Q Consensus 187 i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 265 (559)
++.|+. +-+..+++++...+.+|..++.+...+... ++..+..+. ..........+...+..+....+ ..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence 344554 445688999999999999999776111122 234444444 33334444445556666655432 222
Q ss_pred hHhchHHHHHHh--------hc--cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHH
Q 042204 266 QVRPALPVLAQL--------VH--SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQT 334 (559)
Q Consensus 266 ~~~~~l~~L~~l--------L~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~ 334 (559)
+.+..++.. .. +...+.......++..++...++.- ..+++.+..+| .+.++.++..++..
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 233322222 01 1234455555667888887666522 24578888888 77888889999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHcCCHHHHHHHhhcCChh
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDAGLIGPLINLLQNAEIN 411 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~ 411 (559)
|..++...-.... .....+..-|..+..+.+.+..+..+..+..+ +.+.... ....++..+.++....+.+
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhccccccc
Confidence 9999842211111 23444555555555677777666666555443 2332222 3344677777777666543
No 225
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.58 E-value=7.6 Score=39.51 Aligned_cols=234 Identities=11% Similarity=0.080 Sum_probs=129.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCC--CchHHHHHhcCcHHHHHHhhcCCC----CHH--HHHHHHHHHHHHhcC
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMRED----YPQ--LQYEAAWALTNIASK 173 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~--~~~~~~ii~~g~v~~Lv~lL~~~~----~~~--~~~~a~~~L~nl~~~ 173 (559)
......+...+.+.++.|+....++....+ ......+.++-+.+.+-++|.+.+ .|+ .+.-++.+|+..++
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 446666677778899999999999876643 223556778888888888887532 233 34445566777776
Q ss_pred CchhH--HHHHhCCCHHHHHHhhCC-CCH------HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhH
Q 042204 174 TSEDT--KVVIDHGAVPIFVKLLAS-PND------DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSM 244 (559)
Q Consensus 174 ~~~~~--~~i~~~g~i~~L~~lL~~-~~~------~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~ 244 (559)
.++.. ..++ +.||.|+.++.. .++ .+.+.+-.+|..+++..+.. ..++..|+++.+.+... .++...
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~-~~~~~~ 168 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYE-LPDGSH 168 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHh-CCCCch
Confidence 45543 2333 478999998865 233 37788999999999886664 45667899998886652 211111
Q ss_pred -HHHHHHHHHHhhcCC--CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH--HHHHH----HhCcHHH
Q 042204 245 -LRTATWTLSNFCRGM--PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK--IQAVI----EAGVCPR 315 (559)
Q Consensus 245 -~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~--~~~~~----~~g~l~~ 315 (559)
..-++..+.-+...- =.......-.++..+..=+...+....-..|..|..+....... ..... ...+-.-
T Consensus 169 d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G 248 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG 248 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence 111222222111111 01111111122333333334455666777788887544222200 00000 0111222
Q ss_pred HHHhhCCC-CCcchhhHHHHHHHhhc
Q 042204 316 LVELLGHR-SSSVLSPALQTIGHIVA 340 (559)
Q Consensus 316 L~~lL~~~-~~~v~~~al~~L~nl~~ 340 (559)
+..+|++. .+.-|.+|+....|+..
T Consensus 249 ~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 249 VVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHhcccCchhcChHHHHHHHHHH
Confidence 34444442 34556777777777654
No 226
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.54 E-value=7 Score=40.47 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=110.8
Q ss_pred hHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC----cchhhHHHHHHHhhcCChHH
Q 042204 270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS----SVLSPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 270 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~~~~~~ 345 (559)
....+.+.+.+++...+..++..+..++ .+....+.++....+..|..++.+... .+...+++++.-+....- .
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls-~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLS-LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 3445677788888777777888888888 455677889999999999999887654 234444444444332211 0
Q ss_pred HHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 346 TQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 346 ~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
....+...++.....+.+-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 01111112222333332211 14456677888888888887777777778778999999999999999999888888888
Q ss_pred cCCCHHHHHHHHH
Q 042204 425 SGGSHEQIKYLVR 437 (559)
Q Consensus 425 ~~~~~~~~~~l~~ 437 (559)
..+.+..+..+.+
T Consensus 242 ~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 242 RKAPDDKRFEMAK 254 (713)
T ss_pred hhCChHHHHHHHH
Confidence 8776665555444
No 227
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.51 E-value=2.2 Score=45.11 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=120.2
Q ss_pred HHHHHhhcc----CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHHH
Q 042204 272 PVLAQLVHS----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQT 346 (559)
Q Consensus 272 ~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~ 346 (559)
|...+...+ .|++++..|.-+|..+..-+.+.. . .-+|.++..|. +++|.+|..|.-.+|.++-.-....
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc---~--ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC---S--EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH---H--HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence 444444443 688899888888887765444332 1 23688888887 7999999999999998875433332
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+. .-..|..-|.+. +..||+.+..++.++..... +--.|-++.+..+|.++|.++...|-..+..++..
T Consensus 970 de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 970 DE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 22 234677777777 89999999999999875321 22346788899999999999999999999999875
Q ss_pred CCHHHHHHHHHcCChHHHHhcCCC---CChHHHHHHHHHHHHHHHhhhh
Q 042204 427 GSHEQIKYLVREKCIKPLCDLLPC---ANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 427 ~~~~~~~~l~~~~~l~~L~~lL~~---~d~~v~~~~l~~l~~il~~~~~ 472 (559)
.+. +-.|+++.+..+-.+ .+.. -..+...|..+.....+
T Consensus 1039 dNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh 1080 (1128)
T COG5098 1039 DNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERH 1080 (1128)
T ss_pred ccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHH
Confidence 322 234556555554422 1222 44566666666655544
No 228
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.44 E-value=20 Score=42.00 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=55.8
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 353 GALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 353 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+++|.|-.-|.+. +..+|..|...++.+......+.. =-...++...+.-+.+.+.++|.+++....++...
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 7899999999998 999999999999999864333222 00123566667777788999999999999988876
No 229
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.30 E-value=10 Score=38.40 Aligned_cols=305 Identities=16% Similarity=0.185 Sum_probs=154.9
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCC-chHHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhcCCchh
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERS-PPIEEVIQSGVVPRFVEFLMR----------EDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~-~~~~~ii~~g~v~~Lv~lL~~----------~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
.+.+.+.+..|...|.+.+....+ +..+.+.+ -++.++++++. +.+..+..+|+++|+.+.. +++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence 344556666666666666554322 22333322 24445544432 1126888999999999987 5555
Q ss_pred HHHHHhCC---CHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch----hhhHhHHHHH
Q 042204 178 TKVVIDHG---AVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE----HAKLSMLRTA 248 (559)
Q Consensus 178 ~~~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~----~~~~~~~~~a 248 (559)
...+-+.- ++...+..+.+ .+..+...++|+|..=- +...++....+..++..+.. -....+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 44443321 34555666644 45667777777776531 22234444555556655522 2345677778
Q ss_pred HHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc--CCh-hHHHH---HHH----hC-----cH
Q 042204 249 TWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN--GKN-DKIQA---VIE----AG-----VC 313 (559)
Q Consensus 249 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~-~~~~~---~~~----~g-----~l 313 (559)
+.++.+|....|..-......-+|.++..+-+....++..|...+..+.. ..+ ..... ..+ .+ +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 88888888776544444444456676666666666676665555444431 111 11111 111 12 34
Q ss_pred HHHHHhhCCCCCcchhhHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc---CCHHHH
Q 042204 314 PRLVELLGHRSSSVLSPALQTIGHIVAGDDF-QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA---GNREQI 389 (559)
Q Consensus 314 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~ 389 (559)
++|..++.+.+.....+-+|..--..-++.. .....+ ...+...-..++++ ++.+|.+|..+=..++. .++...
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~ 312 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTS 312 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4466666664554455545544333333321 111111 13344444456677 88899887544443332 222222
Q ss_pred HHHHHcCCHHHHHHHhhcC-Ch----hHHHHHHHHHHHHh
Q 042204 390 QAVIDAGLIGPLINLLQNA-EI----NIKNWAAWAISNAT 424 (559)
Q Consensus 390 ~~li~~~~i~~Li~lL~~~-~~----~v~~~a~~aL~nl~ 424 (559)
...+.- +..++...+... .. +++..++..++++.
T Consensus 313 ~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 313 PKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 222222 233333334332 22 45566666666554
No 230
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.17 E-value=2.8 Score=43.04 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.-+..|+..+.|+|+..+......+.++... .......+...+...|.+++.....+....+.+++++.+..|..-.-
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 4567788888999998888888888887654 34444445555777888888766556778889999999988643111
Q ss_pred HHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 179 KVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
......=....|+.+.+.+. .....+-..++..++..+|..-.. ++..+++.= ...+..-....+.-+..+..
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHH
Confidence 11111111234444555433 233455566666666555543222 233333332 11222222223344455554
Q ss_pred CCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCCC-----CCcch
Q 042204 258 GMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGHR-----SSSVL 328 (559)
Q Consensus 258 ~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~-----~~~v~ 328 (559)
..+...+ .....+...+...+.+.+..|.+.|+....| + ..-.++.. .++|.+..-|... +..++
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4332222 2335667778888899999998888755422 2 22222222 2567777666441 56688
Q ss_pred hhHHHHHHHhhcCChHH
Q 042204 329 SPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 329 ~~al~~L~nl~~~~~~~ 345 (559)
..|..++..+...+...
T Consensus 359 ~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKL 375 (409)
T ss_dssp HHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHhCHHH
Confidence 88888888888776643
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=1.2 Score=42.63 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=103.7
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 347 (559)
...+...+..|.++|.+...+++..+..|+....+.....+. .++-.+++-+++....|-..|+.+++.|.+.-....+
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667788999999999999999999766655444443 3677778888888889999999999999886554443
Q ss_pred HHHhCCChHHHHHHh-cCC--CchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 348 CIINCGALPYLLVLL-IHS--HKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 348 ~~~~~g~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
. -++.++..| ... .+.-|+..|-.+|..+..+ ++. .+++.|+..+++..+.++..++.+..++
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 3 233444433 221 1456888888888877653 222 2577788888888999998888888777
Q ss_pred hcC
Q 042204 424 TSG 426 (559)
Q Consensus 424 ~~~ 426 (559)
...
T Consensus 233 v~r 235 (334)
T KOG2933|consen 233 VIR 235 (334)
T ss_pred cee
Confidence 654
No 232
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.69 E-value=9.1 Score=36.84 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=136.3
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC---CcHhhH---hchHHHHHHhhccC-CHhHHHHHHHHHH
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR---PIFEQV---RPALPVLAQLVHSN-DKEVLTDACWALY 294 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~---~~~l~~L~~lL~~~-d~~v~~~a~~~L~ 294 (559)
.+.+.|.+..++..+ ..-+.+.++.++...+++-+..-. +..... ..++..|+.- .. .+++...+-..+.
T Consensus 74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR 150 (342)
T ss_pred HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence 445677888888888 666778888899999998876522 222222 2333333333 22 2555555544454
Q ss_pred HhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCC----hHHHHHHhcCCCchhH
Q 042204 295 FLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA----LPYLLVLLIHSHKKSI 370 (559)
Q Consensus 295 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~~v 370 (559)
..... +...+.+....-+......+..+.-.+...|..+...+.+........++..+. .+.--.++.+. +.-+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 44432 334455666677778888888888888899999999888877666555554433 44466677888 9999
Q ss_pred HHHHHHHHHHhhcC--CHHHH-HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 371 KNHACWTISKITAG--NREQI-QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 371 ~~~a~~~L~nl~~~--~~~~~-~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
+..+...++.+..+ +.... +++-...-+..++.+|.++...+|-+|-....-...+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999998763 33333 33334456889999999999999999998888777653
No 233
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.58 E-value=10 Score=36.32 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=122.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhh
Q 042204 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVL 224 (559)
Q Consensus 147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~ 224 (559)
|=..|.+++ +.+|..|..+|+.+...-+... ....-+..|+.++.+ .+......++.++..+.....-
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~------ 73 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF------ 73 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC------
Confidence 445677888 8999999999999887544322 222335556665543 4555555567777777633221
Q ss_pred ccCCHHHHHHHhch-----hhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhcc
Q 042204 225 SEEALIPLLAQLNE-----HAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 225 ~~g~l~~Ll~ll~~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~ 298 (559)
..+....+++.+.+ ......+..+...+..+...........-...+..+++++. ..||.-+..+...+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11113333333322 22344566666677776655321112222456666677765 4588877777777776653
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCC---------C-CC-c-chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC
Q 042204 299 GKNDKIQAVIEAGVCPRLVELLGH---------R-SS-S-VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH 366 (559)
Q Consensus 299 ~~~~~~~~~~~~g~l~~L~~lL~~---------~-~~-~-v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~ 366 (559)
.-+ + ....+.+.+.+.. + ++ . .+..--..|.+....++.... -.+|.|++-|.++
T Consensus 154 ~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~- 220 (262)
T PF14500_consen 154 EFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST- 220 (262)
T ss_pred hcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC-
Confidence 332 1 2233444444331 1 22 1 233344445554444443332 4688999999999
Q ss_pred chhHHHHHHHHHHHhhc
Q 042204 367 KKSIKNHACWTISKITA 383 (559)
Q Consensus 367 ~~~v~~~a~~~L~nl~~ 383 (559)
.+.+|..++.+|...+.
T Consensus 221 ~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACIE 237 (262)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 89999999999988875
No 234
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=3.6 Score=43.74 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=120.8
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Cc----hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHH
Q 042204 135 IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK-TS----EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWAL 209 (559)
Q Consensus 135 ~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 209 (559)
.++++-.=.=|.+.+-|+-.+ ..+|..|+..+.+.--- ++ +..+.+++ .-...|-++|.++-+.+|..|+..+
T Consensus 167 Veeml~rL~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv 244 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGV 244 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHH
Confidence 444443334466667777778 79999999999987542 22 22333443 2345678899999999999988888
Q ss_pred HHHhCCCchhhhhhhcc---CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHH
Q 042204 210 GNVAGDSPRCRDLVLSE---EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVL 286 (559)
Q Consensus 210 ~nl~~~~~~~r~~i~~~---g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~ 286 (559)
..+... +-..+... ..+..+..-+..++..+++......|..+..++ ........++|.+-..|+++...|+
T Consensus 245 ~k~~s~---fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VR 319 (1005)
T KOG1949|consen 245 CKITSK---FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVR 319 (1005)
T ss_pred HHHHHH---HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHH
Confidence 777532 22222111 123333333444555677777777788777763 3344556778888888889999999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204 287 TDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339 (559)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 339 (559)
..+...|..+-....-. +.+---.+.++..|..++..+....+..|-+.+
T Consensus 320 vA~vd~ll~ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 320 VAFVDMLLKIKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHHHHHHHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 99988888775332211 221112345666666666555555555555554
No 235
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.44 E-value=3.8 Score=37.01 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
-++.+++...+.+...+..|+..+.-++...=-.|.+ .+|.++.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 5678888888999999999999999887765334433 6899999999988 99999999999999886554433
Q ss_pred HHHhCCCHHHHHHh---hCCC-CHHH---HHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-------hHhHH
Q 042204 180 VVIDHGAVPIFVKL---LASP-NDDI---REQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-------KLSML 245 (559)
Q Consensus 180 ~i~~~g~i~~L~~l---L~~~-~~~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-------~~~~~ 245 (559)
.-...|+ ..-..+ +... .... .......+..+...+...|..+ +..+++.+.... ...-.
T Consensus 82 ~~~~~gi-~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEGI-RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHHH-HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 3332332 222221 1111 1111 3344555556666555555554 556666663321 22334
Q ss_pred HHHHHHHHHhhcC
Q 042204 246 RTATWTLSNFCRG 258 (559)
Q Consensus 246 ~~a~~~L~nL~~~ 258 (559)
...+++..||+.-
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 4455555555544
No 236
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=21 Score=38.88 Aligned_cols=219 Identities=11% Similarity=0.076 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204 244 MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL 320 (559)
Q Consensus 244 ~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 320 (559)
++...+.+|.|+...-.........-++|++-....-+. .-..+++...=.....+.+.....+. +++|.+..++
T Consensus 631 Lr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~i 708 (978)
T KOG1993|consen 631 LRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYII 708 (978)
T ss_pred HHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHH
Confidence 444566788888876544444444445555443332222 22344443322222222222222222 4678888877
Q ss_pred CCCCCcchhhHHHHHHHh-hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204 321 GHRSSSVLSPALQTIGHI-VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIG 399 (559)
Q Consensus 321 ~~~~~~v~~~al~~L~nl-~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~ 399 (559)
....+..+ .++.++... .-.+..... -...|+.+.+..++..- ..+-....+.++..+...++ ........++++
T Consensus 709 E~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~ 784 (978)
T KOG1993|consen 709 EQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLS 784 (978)
T ss_pred HhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhH
Confidence 65544332 233333222 122222111 11237777888887654 44444455555555554433 555566677888
Q ss_pred HHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCC--------hHHHHhcCC-CCChHHHHHHHHHHHHHH
Q 042204 400 PLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVR-EKC--------IKPLCDLLP-CANPTIVTVCLKGLENIL 467 (559)
Q Consensus 400 ~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~--------l~~L~~lL~-~~d~~v~~~~l~~l~~il 467 (559)
.+..-+-. +.+.+-..-+..++.++.. +++..-.+++ ..- +..-+.+.. -.+++-++.-.-++..++
T Consensus 785 ~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll 863 (978)
T KOG1993|consen 785 RLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLL 863 (978)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHh
Confidence 88776633 3566667777777777665 3443333222 221 122222222 245555555555666666
Q ss_pred Hh
Q 042204 468 KV 469 (559)
Q Consensus 468 ~~ 469 (559)
..
T Consensus 864 ~t 865 (978)
T KOG1993|consen 864 RT 865 (978)
T ss_pred cc
Confidence 43
No 237
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.97 E-value=9.4 Score=39.57 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=109.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCCch
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~---~~~~~~a~~~L~nl~~~~~~ 176 (559)
....+.+.+.+++...+..|+..+..+ |.+ ...+.+++...++..|.+++.+++. .++....+.++..+-...-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 456888899999999999999999885 443 5668999999999999999988762 2444444444444433211
Q ss_pred hHHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLA--SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
..=..+...+|.....+.+ ..+..+-..|+..|-++...++..++.+.+.--+..++..+ +..+..+...|...+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 1111112223333333332 24556677888889998887777788888888899999999 66677777777777777
Q ss_pred hhcCCCC
Q 042204 255 FCRGMPR 261 (559)
Q Consensus 255 L~~~~~~ 261 (559)
+....|.
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7776643
No 238
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.86 E-value=0.77 Score=35.89 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..+...+..|+++.+.+|-.|+..|++++... + ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~-- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD-- 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH--
Confidence 35678888999999999999999999998764 3 111112457788889999998 89999999999999985543
Q ss_pred HHHHhCCCHHHHHHhhC
Q 042204 179 KVVIDHGAVPIFVKLLA 195 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~ 195 (559)
.+++.|++...
T Consensus 77 ------~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ------EVLPILLDEYA 87 (92)
T ss_pred ------HHHHHHHHHHh
Confidence 24556665443
No 239
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=91.82 E-value=18 Score=43.99 Aligned_cols=268 Identities=11% Similarity=0.095 Sum_probs=140.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCch---hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHH
Q 042204 196 SPNDDIREQAVWALGNVAGDSPR---CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALP 272 (559)
Q Consensus 196 ~~~~~v~~~a~~~L~nl~~~~~~---~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~ 272 (559)
+++..++..|+..|..++...-+ ....-....++.|+...+.+..+.++++.++.++.++..........-...++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 34566767777776666632111 111111234678888888777788999999999998876542111112223333
Q ss_pred HHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hC----cHHHHHHhhCCC-CCcchhhHHHHHHHhhc----C
Q 042204 273 VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AG----VCPRLVELLGHR-SSSVLSPALQTIGHIVA----G 341 (559)
Q Consensus 273 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g----~l~~L~~lL~~~-~~~v~~~al~~L~nl~~----~ 341 (559)
.+.......++.+...|..++..+... ....+.. .+ ++..|....... +..+-..|+..|.+++. +
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence 333333455677777777777766532 1111111 12 233333333332 34455556666654421 0
Q ss_pred Ch-----------------------HHHH-----HHHhCCChHHH---HHHhcCCCchhHHHHHHHHHHHhhc--C---C
Q 042204 342 DD-----------------------FQTQ-----CIINCGALPYL---LVLLIHSHKKSIKNHACWTISKITA--G---N 385 (559)
Q Consensus 342 ~~-----------------------~~~~-----~~~~~g~l~~L---~~lL~~~~~~~v~~~a~~~L~nl~~--~---~ 385 (559)
.- .... .......++.| ..+.... +++||..|+.+|-.+.. | +
T Consensus 1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence 00 0000 00001233333 3344555 89999999999988765 2 5
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcC------------------C--------hhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 042204 386 REQIQAVIDAGLIGPLINLLQNA------------------E--------INIKNWAAWAISNATSGGSHEQIKYLVREK 439 (559)
Q Consensus 386 ~~~~~~li~~~~i~~Li~lL~~~------------------~--------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 439 (559)
++.+..++.. ++-++++.++.. + .+....|+..+.++... --+.... .-.+
T Consensus 1384 ~~~W~~if~~-VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~-fFd~L~~-~L~~ 1460 (1780)
T PLN03076 1384 LPLWERVFES-VLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVK-FYPTVNP-LLKK 1460 (1780)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHH
Confidence 6666766664 555666555421 0 02223333334443331 1112222 1234
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
++..|..++..++..+......+|.+++...
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 5666666677788888888888888887543
No 240
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.69 E-value=3 Score=37.28 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=90.7
Q ss_pred cchhhHHHHHHHhhcCChHH-H----HHHHh------CCChHHHH-HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204 326 SVLSPALQTIGHIVAGDDFQ-T----QCIIN------CGALPYLL-VLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393 (559)
Q Consensus 326 ~v~~~al~~L~nl~~~~~~~-~----~~~~~------~g~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li 393 (559)
++|..|+.+|..++...+.. . ..++- .+.-+.|+ -++.++ ++.+|..|+.++..+..+........-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 36777888888887762211 0 11111 12333344 445666 999999999999999887655544433
Q ss_pred HcC-------------------CHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204 394 DAG-------------------LIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP 453 (559)
Q Consensus 394 ~~~-------------------~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~ 453 (559)
+.+ +-..|+..|+.+ +..+....+.++..++.....+..+.=.-..++..+..++.+.|+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 211 223344455444 667888889999999887554443221112245566667788999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042204 454 TIVTVCLKGLENILKVG 470 (559)
Q Consensus 454 ~v~~~~l~~l~~il~~~ 470 (559)
+++..++.++..++...
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999888554
No 241
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.59 E-value=11 Score=40.96 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=80.7
Q ss_pred chHHHHHHhhccC----CHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhC----CCCCcchhhHHHHHHH
Q 042204 269 PALPVLAQLVHSN----DKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLG----HRSSSVLSPALQTIGH 337 (559)
Q Consensus 269 ~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~----~~~~~v~~~al~~L~n 337 (559)
..+..+..++.++ .+.+...++-+++.+... ........+-..+++.+...|. ..+...+..++++|||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3455566666543 455667777777766521 1111001111234555555543 3455567789999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLI--HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIK 413 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~ 413 (559)
+..... ++.+...+. ...+..+|..|+|+|..++...+.. +-+.|+.++.+ .++++|
T Consensus 473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHH
Confidence 876322 334444443 1125689999999999987644554 33456666654 478899
Q ss_pred HHHHHHHHHH
Q 042204 414 NWAAWAISNA 423 (559)
Q Consensus 414 ~~a~~aL~nl 423 (559)
..|..+|...
T Consensus 534 iaA~~~lm~t 543 (574)
T smart00638 534 MAAVLVLMET 543 (574)
T ss_pred HHHHHHHHhc
Confidence 8888887764
No 242
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.55 E-value=1.6 Score=34.16 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=63.0
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI 308 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 308 (559)
+...+..+ .++.+.++..++..|..|...+. ........++..+...++++|+-|--+|+.+|..|++..++.
T Consensus 5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----- 77 (92)
T PF10363_consen 5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----- 77 (92)
T ss_pred HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----
Confidence 34455556 56778899999999999998865 334445778888889999999999999999999999766642
Q ss_pred HhCcHHHHHHhhC
Q 042204 309 EAGVCPRLVELLG 321 (559)
Q Consensus 309 ~~g~l~~L~~lL~ 321 (559)
+++.|++...
T Consensus 78 ---vl~~L~~~y~ 87 (92)
T PF10363_consen 78 ---VLPILLDEYA 87 (92)
T ss_pred ---HHHHHHHHHh
Confidence 3555555443
No 243
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.47 E-value=5.2 Score=42.85 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC
Q 042204 245 LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS 324 (559)
Q Consensus 245 ~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~ 324 (559)
+..-...|.++...- +.......++|.|+..+.+ ...+-..+-.+..+....+ +.-....+++.|...++...
T Consensus 290 Ks~Flk~Ls~~ip~f--p~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 290 KSSFLKGLSKLIPTF--PARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred HHHHHHHHHHhhccC--CHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCC
Confidence 333444566666543 3334457788888887733 3333333334444443333 22233456788888887532
Q ss_pred CcchhhHHHHHHHh---hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHH
Q 042204 325 SSVLSPALQTIGHI---VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401 (559)
Q Consensus 325 ~~v~~~al~~L~nl---~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~L 401 (559)
+ ....+.++-++ ....+ ..-+...++|.|..-+++. +..++..++..+..++..-+ -..+..-++|.|
T Consensus 363 ~--~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l 433 (700)
T KOG2137|consen 363 P--KQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRL 433 (700)
T ss_pred c--ccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHh
Confidence 2 12223333333 22111 1223346788888888888 89999999999888864211 223344578888
Q ss_pred HHHh-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 402 INLL-QNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 402 i~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
.++. ...+..++..++-++..++...+... -...+.++....+..|+.++...+.+..++.-.
T Consensus 434 ~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~-----v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 434 KNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA-----VLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred hcchhcccchHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 7763 45578899999999998884322111 112355666666788999999999888887644
No 244
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.25 E-value=14 Score=39.96 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=88.5
Q ss_pred CHHHHHHhhCC----CCHHHHHHHHHHHHHHhC----CCchhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHH
Q 042204 186 AVPIFVKLLAS----PNDDIREQAVWALGNVAG----DSPRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSN 254 (559)
Q Consensus 186 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~n 254 (559)
.+..+..++.+ +.+.++..|+-+++++.. +.+.+...+ ....++.+...|... .+..-+..++.+|.|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 45566677765 466788888888888763 211111111 122455566555322 233344556777777
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchh
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLS 329 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~ 329 (559)
+... ..++.+..++. .....++..|+++|..++...+... -+.+..++.+ .+.++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 6543 23455555554 2346799999999998886555443 2555666554 3456777
Q ss_pred hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372 (559)
Q Consensus 330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~ 372 (559)
.|+..|... ++.. ..+..+...+....+..|+.
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence 776665432 1211 23456666666553555543
No 245
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.04 E-value=2.3 Score=37.51 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=79.0
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHhhc---CC
Q 042204 311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHSHKKSIKNHACWTISKITA---GN 385 (559)
Q Consensus 311 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 385 (559)
.++.++..+|.++++.-|..++..+...+..++. +.+.++ ..+..++.+|+.++.+.+++.++.++..|.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567889999999999999999999988886532 223222 4577788888887678889999999998875 45
Q ss_pred HHHHHHHHHc---CCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 386 REQIQAVIDA---GLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 386 ~~~~~~li~~---~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
++..+++... ++++.++++++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 6655555433 245555555554 46667777777777653
No 246
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.97 E-value=5.7 Score=35.50 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcC-Cchh----HHHHH------hCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhh--
Q 042204 159 LQYEAAWALTNIASK-TSED----TKVVI------DHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVL-- 224 (559)
Q Consensus 159 ~~~~a~~~L~nl~~~-~~~~----~~~i~------~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-- 224 (559)
+|..|+.+|..++.. ++.. ...++ ..+.-+.|+. ++.++++.+|..|+.++..+-.....+-...-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777764 1111 01111 1223344444 56789999999999999998755432211111
Q ss_pred --ccC---------------CHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH--hhHhchHHHHHHhhccCCHhH
Q 042204 225 --SEE---------------ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF--EQVRPALPVLAQLVHSNDKEV 285 (559)
Q Consensus 225 --~~g---------------~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v 285 (559)
..+ .-..|+..|....+..+....+.++..|....|.... .....++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 011 1223444454556777888899999999998865543 344667777778888999999
Q ss_pred HHHHHHHHHHhccC
Q 042204 286 LTDACWALYFLSNG 299 (559)
Q Consensus 286 ~~~a~~~L~~l~~~ 299 (559)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888744
No 247
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=17 Score=42.51 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=93.3
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHH
Q 042204 311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ 390 (559)
Q Consensus 311 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 390 (559)
+++|.|..-|.+.+..+|..|...+|.+......+.. =-.......++.-+... +..+|.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 6889999999999999999999999999986654332 00114455566666677 889999999999888776665433
Q ss_pred HHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 391 ~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
... ....+... +.|++++.....++..+.. ....-.++.. .+..+-+.+.++...|+..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~~~--~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRER--DLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHhh--cCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 322 12222222 2344444333222222111 0111112222 566666667788899999999999888874
No 248
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.74 E-value=1.1 Score=40.36 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCchhhhhhh---------------ccCCHHHHHHHhch-----hhhHhHHHHHHHHHHH
Q 042204 195 ASPNDDIREQAVWALGNVAGDSPRCRDLVL---------------SEEALIPLLAQLNE-----HAKLSMLRTATWTLSN 254 (559)
Q Consensus 195 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~---------------~~g~l~~Ll~ll~~-----~~~~~~~~~a~~~L~n 254 (559)
.++.......++..|+|++.....++..+- +...+..|+..+.. .....-......+|+|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344555677888889999876555442221 22356677777754 1234556778889999
Q ss_pred hhcCCCCCcHhhH--hc--hHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH---hCcHHHHHHhhC
Q 042204 255 FCRGMPRPIFEQV--RP--ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE---AGVCPRLVELLG 321 (559)
Q Consensus 255 L~~~~~~~~~~~~--~~--~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~---~g~l~~L~~lL~ 321 (559)
+++....+.+... .. .+..|+.++.+.+..-+.-++.+|.|+|...+.. ..+.. .++++.|+--|.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 9987643333322 22 3677888888887777888999999999665544 34444 245555554444
No 249
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.52 E-value=15 Score=34.43 Aligned_cols=140 Identities=22% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223 (559)
Q Consensus 144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 223 (559)
+|.|+.-+....++..+...+.+|..++..+..+... ++..|..+...+..+.+.-+...+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 4555554555444999999999999999954222222 35567777777777776667777777765443211
Q ss_pred hccCCHHHHHHHh---------chhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCHhHHHHHHHHH
Q 042204 224 LSEEALIPLLAQL---------NEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDKEVLTDACWAL 293 (559)
Q Consensus 224 ~~~g~l~~Ll~ll---------~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L 293 (559)
+.+.+++..+ ..+...+.......++..+|...|. .-...++.+..++ +++++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3344444441 1122334445556788889988765 4456778888888 788889999999999
Q ss_pred HHhcc
Q 042204 294 YFLSN 298 (559)
Q Consensus 294 ~~l~~ 298 (559)
..++.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99993
No 250
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.16 E-value=22 Score=36.39 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=113.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCC---chhHHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHHHHhCCC
Q 042204 147 FVEFLMREDYPQLQYEAAWALTNIASKT---SEDTKVVIDHGAVPIFVKLLAS-------PNDDIREQAVWALGNVAGDS 216 (559)
Q Consensus 147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~ 216 (559)
+..++...+ .+-|+.|+..+++.+.+. ...++.+.++=+.+.+-++|.+ ++.-.+..++..|.-+|.+.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 555566555 688999999999998853 3345667887778888888865 34455667777888887663
Q ss_pred chh-hhhhhccCCHHHHHHHhchhhhHh------HHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC----HhH
Q 042204 217 PRC-RDLVLSEEALIPLLAQLNEHAKLS------MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND----KEV 285 (559)
Q Consensus 217 ~~~-r~~i~~~g~l~~Ll~ll~~~~~~~------~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d----~~v 285 (559)
.-. ...++ +.++.|+..+.+..+++ +...+-.+|..++...+........|.++.+.++-.-.+ ..+
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 211 11222 25788888886544443 788888899988888666666666899999887654222 222
Q ss_pred HHHHHHHH-HHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 286 LTDACWAL-YFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 286 ~~~a~~~L-~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
....+..+ ..+...+ +....+.. ++..+..-+...+...+-..++.|..+..
T Consensus 173 al~Vlll~~~~~~cw~-e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWS-ETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCc-CCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22211111 1111111 12222222 24444444444555667778888876554
No 251
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.10 E-value=4.2 Score=36.75 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=73.5
Q ss_pred CCCCcchhhHHHHHHHhhcCChHHHHHHHh----------------CCChHHHHHHhcCC-----CchhHHHHHHHHHHH
Q 042204 322 HRSSSVLSPALQTIGHIVAGDDFQTQCIIN----------------CGALPYLLVLLIHS-----HKKSIKNHACWTISK 380 (559)
Q Consensus 322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~g~l~~L~~lL~~~-----~~~~v~~~a~~~L~n 380 (559)
+++......++..|+|++..... ...+++ ...+..|+..+..+ ....-....+.+++|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34455666788888888875443 222322 23466777777541 133445668889999
Q ss_pred hhcCCHHHHHHHHHc--CC--HHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 381 ITAGNREQIQAVIDA--GL--IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR 437 (559)
Q Consensus 381 l~~~~~~~~~~li~~--~~--i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 437 (559)
++. .++.++.+++. +. +..|+..+++.+..-|.-++.+|.|++.. .+....|..
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~ 142 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS 142 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence 975 47777777743 34 78888888888777778899999999985 333344444
No 252
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.08 E-value=8 Score=34.42 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=54.0
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 353 GALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 353 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
-.++.+.+-|... +...+--|...+..+... ..+.+-.++.. ++..|...|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4577777777776 555666666666666553 56666666654 88888999999999999999999999954
No 253
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=89.86 E-value=28 Score=36.49 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCH---HHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204 112 DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP---QLQYEAAWALTNIASKTSEDTKVVIDHGAVP 188 (559)
Q Consensus 112 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~---~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~ 188 (559)
..+.+..+...+..+...... ...... ..+.+.+.....+ ..+.+|+.+| +.+..+. ...+.++.+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~--~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~L---T~~Grdi--~~~~~~i~~ 110 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDS--SSGLMR----AEFFRDISDPSNDDDFDLRLEALIAL---TDNGRDI--DFFEYEIGP 110 (464)
T ss_pred CHHHHHHHHHHHHHHHHcccc--ccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHH---HcCCcCc--hhcccchHH
Confidence 456777777777777665321 001111 1222333333223 4555555555 4433333 225667777
Q ss_pred HHHHhhCCC---------------------------CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhh
Q 042204 189 IFVKLLASP---------------------------NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAK 241 (559)
Q Consensus 189 ~L~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~ 241 (559)
.|...+..- +.......+..+.|+...+...-+.-.-.+.+..++.+.....+
T Consensus 111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 777766321 11122233444444443332211111111223333333333333
Q ss_pred HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC
Q 042204 242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG 321 (559)
Q Consensus 242 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~ 321 (559)
....+.++..+-.+..... .+......++..|....... +....+-.++.||+...... ..+..|..+|.
T Consensus 191 ~~di~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~ 260 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGD-IPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHc
Confidence 4444555555555444331 11222233444444442222 55566777788887433322 24567777773
Q ss_pred CC------CCcchhhHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 322 HR------SSSVLSPALQTIGHIVAGDDFQTQCIINC---GALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 322 ~~------~~~v~~~al~~L~nl~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
.+ +..+..-|+..++.+..+.......-+.. -+++.|...++.. ++.+-.+....+.++.
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 32 23355678888888887763222111211 2678888888877 7777778887777776
No 254
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.86 E-value=19 Score=34.45 Aligned_cols=224 Identities=14% Similarity=0.051 Sum_probs=129.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch-hhhHhHHHHHHHHHHHhhcCCCCCcHhhH
Q 042204 189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE-HAKLSMLRTATWTLSNFCRGMPRPIFEQV 267 (559)
Q Consensus 189 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 267 (559)
.|-..|.++++.+|..|+.+|+.+...-+.. .+...-+..|+..+.. -.|......++.++..|.+.+. ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence 4556788899999999999999988665531 1222234555554421 1344555555677777765432 222223
Q ss_pred hchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChH
Q 042204 268 RPALPVLAQLVH--SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 268 ~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~ 344 (559)
..++..+.+-.+ +.-...+..+...+..+.....+..+. ...+.+..+++.+.. .+|+-...+...+..+...-+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 333444433222 234567888888888888654433322 223567777887766 4666666666666666543331
Q ss_pred HHHHHHhCCChHHHHHHhc--------CCC-ch--hHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 345 QTQCIINCGALPYLLVLLI--------HSH-KK--SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
....+.+.+.+. .+. ++ -.+..-...|.+....++.... -.+|.|++-|.++...++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence 223334444432 111 11 1334444455555444444322 268899999999999999
Q ss_pred HHHHHHHHHHhcCCCH
Q 042204 414 NWAAWAISNATSGGSH 429 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~ 429 (559)
..++.+|..++..-.+
T Consensus 226 ~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 226 LDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHCCH
Confidence 9999999888765433
No 255
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.84 E-value=4.6 Score=44.06 Aligned_cols=312 Identities=16% Similarity=0.083 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH------HhC
Q 042204 111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV------IDH 184 (559)
Q Consensus 111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i------~~~ 184 (559)
+|..+...+++.+..++.+ ......+++.|+|.+|+..=.- ...-.....||..|.. .......+ +-+
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 3455666788888887765 6777888888888877665221 2344555567777776 32222222 223
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh------------------hhHhHHH
Q 042204 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH------------------AKLSMLR 246 (559)
Q Consensus 185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~------------------~~~~~~~ 246 (559)
.++..-+.+|......-+.++...++-. ..-...-+.+-....++.|+.++..- .+.++.+
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~-f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAA-FVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 4555566677654444444333322221 11011123334455677777776311 1233445
Q ss_pred HHHHHHHHhhcCCCC------CcHhhHhchHHHHHHhhccCC------HhHHHHHHHHHHHhccCCh-------hHHHHH
Q 042204 247 TATWTLSNFCRGMPR------PIFEQVRPALPVLAQLVHSND------KEVLTDACWALYFLSNGKN-------DKIQAV 307 (559)
Q Consensus 247 ~a~~~L~nL~~~~~~------~~~~~~~~~l~~L~~lL~~~d------~~v~~~a~~~L~~l~~~~~-------~~~~~~ 307 (559)
..|.+|....+..-. .......+..+..++-+...+ .+..+..+|-+-.+...-+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 566666655443200 000001112222222221111 2233444444433332222 223456
Q ss_pred HHhCcHHHHHHhhCCC-CC-------cchhhHHHHHHHhhcCChHHHHHHH----hC---CChHHHHHHhcC---CCchh
Q 042204 308 IEAGVCPRLVELLGHR-SS-------SVLSPALQTIGHIVAGDDFQTQCII----NC---GALPYLLVLLIH---SHKKS 369 (559)
Q Consensus 308 ~~~g~l~~L~~lL~~~-~~-------~v~~~al~~L~nl~~~~~~~~~~~~----~~---g~l~~L~~lL~~---~~~~~ 369 (559)
...+.+..++++...+ ++ .....|+.+|..+..-.+-+.+..- +. .++..++..-.. ..+++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe 677 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE 677 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence 6677777777776542 22 2344566666655554444433211 11 133333332211 11788
Q ss_pred HHHHHHHHHHHhhcCCHHH----HH-------------------------------HHHHcCCHHHHHHHhhcCC-----
Q 042204 370 IKNHACWTISKITAGNREQ----IQ-------------------------------AVIDAGLIGPLINLLQNAE----- 409 (559)
Q Consensus 370 v~~~a~~~L~nl~~~~~~~----~~-------------------------------~li~~~~i~~Li~lL~~~~----- 409 (559)
+++.|+.+|.|+..+.|+. +. .+...++|..|+++|+...
T Consensus 678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a 757 (1516)
T KOG1832|consen 678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA 757 (1516)
T ss_pred HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence 9999999999887643211 11 1223578999999998653
Q ss_pred hhHHHHHHHHHHHHhcCCCH
Q 042204 410 INIKNWAAWAISNATSGGSH 429 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~~~~ 429 (559)
..+|.-|+.+|.-++...+.
T Consensus 758 D~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred HHHHHHHHHHHhccccCcHH
Confidence 36899999999999986543
No 256
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=54 Score=39.63 Aligned_cols=272 Identities=14% Similarity=0.119 Sum_probs=140.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcH
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIF 264 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~ 264 (559)
.+..++..|..+++..+-.+..+++.++..-+.. .. -....+.++..+....++-.+..-..++..+-+.. .....
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3445556666678888888888888887543321 11 11234556666644455544444455555555544 23333
Q ss_pred hhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc---
Q 042204 265 EQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA--- 340 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~--- 340 (559)
......+..+..+..++ +|.|+..++.++..+.+.........++. -+..+..+|-+..+ .......+++....
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCc-chhhhhhhhccccccch
Confidence 44455667777777655 56999999999999996655444333333 33344444433222 22222222222222
Q ss_pred --------------CChH--HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHH
Q 042204 341 --------------GDDF--QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL 404 (559)
Q Consensus 341 --------------~~~~--~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~l 404 (559)
++.. .+. .+....+-...-++.++ ++.++.++..++-++....+.+... .-+++.|..+
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSL 1106 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHH
Confidence 2211 111 11112233334445555 8888999988888876533322111 1146666666
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCHHH---HHH--------------HH-HcCChHHHHhcCC-CCChHHHHHHHHHHHH
Q 042204 405 LQNAEINIKNWAAWAISNATSGGSHEQ---IKY--------------LV-REKCIKPLCDLLP-CANPTIVTVCLKGLEN 465 (559)
Q Consensus 405 L~~~~~~v~~~a~~aL~nl~~~~~~~~---~~~--------------l~-~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~ 465 (559)
+.+...-.+.....++..+......+. ... .. +.|+=-.+..+++ ..|.+.+..+++.+.+
T Consensus 1107 l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~ 1186 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSR 1186 (2067)
T ss_pred hcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 665544444444444444433211100 000 11 3343334455554 4577888888888888
Q ss_pred HH
Q 042204 466 IL 467 (559)
Q Consensus 466 il 467 (559)
++
T Consensus 1187 ~~ 1188 (2067)
T KOG1822|consen 1187 ML 1188 (2067)
T ss_pred HH
Confidence 54
No 257
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.80 E-value=6.6 Score=43.21 Aligned_cols=195 Identities=17% Similarity=0.167 Sum_probs=115.7
Q ss_pred HHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHH--HHHHhhccCC-Hh
Q 042204 208 ALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALP--VLAQLVHSND-KE 284 (559)
Q Consensus 208 ~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~--~L~~lL~~~d-~~ 284 (559)
+|+++....+.....+++.+++..+...+..-...++...+...+.|++...+..........+. .+-.++...+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 66788888888778888999999999999766778899999999999998764333332222221 2333333333 36
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhc
Q 042204 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA-GDDFQTQCIINCGALPYLLVLLI 363 (559)
Q Consensus 285 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~g~l~~L~~lL~ 363 (559)
.-..++..|..+....++..... .+..+...+..... ............-+.+.+..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~-------------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECV-------------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcccc-------------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 66666666666664433211111 11222222211111 11111111222222222555565
Q ss_pred CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHH
Q 042204 364 HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAIS 421 (559)
Q Consensus 364 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~ 421 (559)
....+..+.-|.|++.+++..+++..+.+.+.++++.+.+.-... ..+++.++...+.
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 544777889999999999988888888888888888887764332 3445555544443
No 258
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=89.49 E-value=20 Score=34.23 Aligned_cols=214 Identities=19% Similarity=0.133 Sum_probs=119.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCCC--C-chHHHH-----------HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 042204 105 VAGVWSDDNNLQLEATTKFRKLLSIER--S-PPIEEV-----------IQSGVVPRFVEFLMREDYPQLQYEAAWALTNI 170 (559)
Q Consensus 105 v~~L~s~~~~~~~~a~~~l~~lls~~~--~-~~~~~i-----------i~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl 170 (559)
+.+|.+..+..-..|+..+.+++..-+ . ...+.+ .-.|+.+.+++-|.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 445555555555556655555554321 0 111111 11244555556666644 345566666666
Q ss_pred hcC-------CchhHHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh
Q 042204 171 ASK-------TSEDTKVVIDHGAVPIFVKLLASPN----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH 239 (559)
Q Consensus 171 ~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~ 239 (559)
+.- ..+.|-.+.-.+.+|.++.-+.+++ ......++..|+.+|.... ...+..++..+...
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 552 2222333333456788888887766 2344567788888873321 11234444444222
Q ss_pred ---hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHH
Q 042204 240 ---AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRL 316 (559)
Q Consensus 240 ---~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 316 (559)
...+..+.++..|+.-.. |. .....+-.++.+|.+.-+.++..++..|..+...-+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 233444545444443321 21 1234566688888888899999999999998865443322 445678888
Q ss_pred HHhhCCCCCcchhhHHHHHHHhhc
Q 042204 317 VELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 317 ~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
.++|.++- -..|+.+|-++.+
T Consensus 234 lrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 234 LRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHhCCcc---HHHHHHHHHHHHh
Confidence 89887654 3566777666554
No 259
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=89.17 E-value=64 Score=39.63 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHHhccCC--CCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCH
Q 042204 110 SDDNNLQLEATTKFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAV 187 (559)
Q Consensus 110 s~~~~~~~~a~~~l~~lls~~--~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i 187 (559)
..+..+...|+..|+++.-.- ..+....-.+..++..|..++.+....++++..+.|+.++..... .-+..| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence 346678888888888764321 112112223445778888877766658999999999999877322 122333 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHHHhCCCchhhhhhhc--cCCHHHHH----HHhchhhhHhHHHHHHHHHHHh--
Q 042204 188 PIFVKLL----ASPNDDIREQAVWALGNVAGDSPRCRDLVLS--EEALIPLL----AQLNEHAKLSMLRTATWTLSNF-- 255 (559)
Q Consensus 188 ~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~l~~Ll----~ll~~~~~~~~~~~a~~~L~nL-- 255 (559)
+.+..++ .+.++.+.+.|..++..|..+.-. .+.. .+.+.-++ ....+..+.++--.|+..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 3333333 456788888888888877644211 1110 12223333 3332222233323333333322
Q ss_pred --hcCC----------C-------------C------Cc---HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204 256 --CRGM----------P-------------R------PI---FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 256 --~~~~----------~-------------~------~~---~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
..+. . . .. ....-.++..|..+..+.+++|+..|+.+|..+.....
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 0 00 01122334444455667889999999999988764322
Q ss_pred -----hHHHHHHHhCcHHHHHHhhCCC----------------CC---c----chhh---HHHHHHHhhcCChHHHHHHH
Q 042204 302 -----DKIQAVIEAGVCPRLVELLGHR----------------SS---S----VLSP---ALQTIGHIVAGDDFQTQCII 350 (559)
Q Consensus 302 -----~~~~~~~~~g~l~~L~~lL~~~----------------~~---~----v~~~---al~~L~nl~~~~~~~~~~~~ 350 (559)
+.-..+.. +++-.++..+++. +. . ..+. |++.+.++.+.--.....++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333 3444444444321 00 0 1223 33333333332111222222
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-----CCHHHHHHHHH
Q 042204 351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITA-----GNREQIQAVID 394 (559)
Q Consensus 351 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~li~ 394 (559)
+ +++..|...+..+ +..+-+.++.+|.++.. -+++.+..+++
T Consensus 1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076 1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 2 4555555556666 78888888888888875 25566655543
No 260
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.91 E-value=2.2 Score=38.34 Aligned_cols=110 Identities=10% Similarity=0.171 Sum_probs=72.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHH-HHhcCCchhHHHHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHHHH
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALT-NIASKTSEDTKVVIDHGAVPIFVKLLAS---------PNDDIREQAVWALGNV 212 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl 212 (559)
-...+++.+.+... .. ..+.-|. .+-.......+.+++.|++..|+.+|.. .+......++.||-.|
T Consensus 67 ~p~~~i~~L~~~~~-~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPS-TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCc-cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34456666665542 21 2222222 2233345677888899999999998853 4457888899999999
Q ss_pred hCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204 213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 213 ~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~ 256 (559)
..........+...+.+..++..+ .+++..++..++..|+.+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 877665555555567888888887 6778899999999998887
No 261
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.75 E-value=4.2 Score=35.64 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=83.6
Q ss_pred HhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcCChH
Q 042204 267 VRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 267 ~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
...+++.|..+++.+ +..++..++++++.|..-++-..+.+... .+ ..- ...........+. ..++....++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~-~~~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP-MMGISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh-hccCCCchHH
Confidence 356778888888765 68999999999999987777554322211 00 000 0111111122221 1122212222
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
..-.-++..|+.+|+++.-..-...++.++.+|.......+-..+.. ++|.+++.+...+...++...+-|+.+.
T Consensus 82 ----~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 ----YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22224567888888776334444566777777764211112223332 8999999998777788877777776664
No 262
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.59 E-value=16 Score=36.94 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=87.9
Q ss_pred HHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc----CC-CchhHHHHHHHHHH
Q 042204 306 AVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI----HS-HKKSIKNHACWTIS 379 (559)
Q Consensus 306 ~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~----~~-~~~~v~~~a~~~L~ 379 (559)
.+.+..-.+.+-.-+... ...-|..|+..+..++..-......++ ...+..+|. ++ .+..-+..|+..++
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 445555555555555433 345677788888888865443332222 123333443 22 25667788899999
Q ss_pred HhhcCCHH------------HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc
Q 042204 380 KITAGNRE------------QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDL 447 (559)
Q Consensus 380 nl~~~~~~------------~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 447 (559)
.++..... ++..+....++|.|. --.+..+-++..|++.+..+-..-++++... +++.++.+
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~ 354 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNH 354 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHH
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence 99863211 344555555777665 2224467899999999999887766554433 78999999
Q ss_pred CCCCChHHHHHHHHHH
Q 042204 448 LPCANPTIVTVCLKGL 463 (559)
Q Consensus 448 L~~~d~~v~~~~l~~l 463 (559)
|.+++.-|...|..++
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 9998888877776553
No 263
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.45 E-value=6.8 Score=37.63 Aligned_cols=145 Identities=19% Similarity=0.168 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCC--CHHHHHHhhC----CCCHHHHHHHHHHHHHHhCCCchhhhhhhccC--CH
Q 042204 158 QLQYEAAWALTNIASKTSEDTKVVIDHG--AVPIFVKLLA----SPNDDIREQAVWALGNVAGDSPRCRDLVLSEE--AL 229 (559)
Q Consensus 158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~l 229 (559)
+-++-++..++-++. ++.....+...+ +...+..++. +..+..+-.++++++|+....+ .|..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 446666666666555 444444443332 2334443332 3567888899999999977644 455555432 23
Q ss_pred HHHHHHhchh---hhHhHHHHHHHHHHHhhcCC--CCCcHhhHhchHHHHHHhh-c-cCCHhHHHHHHHHHHHhccCChh
Q 042204 230 IPLLAQLNEH---AKLSMLRTATWTLSNFCRGM--PRPIFEQVRPALPVLAQLV-H-SNDKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 230 ~~Ll~ll~~~---~~~~~~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL-~-~~d~~v~~~a~~~L~~l~~~~~~ 302 (559)
...+..+... .+..++..+...+.|++-.. ..........++..+.+.+ . ..|+++...++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 3333333232 26778888888888887533 1112222234556666633 2 36899999999999999966654
Q ss_pred HH
Q 042204 303 KI 304 (559)
Q Consensus 303 ~~ 304 (559)
..
T Consensus 236 ~~ 237 (268)
T PF08324_consen 236 AK 237 (268)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 264
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.27 E-value=26 Score=38.34 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=101.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHHhhcCC-C
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSNFCRGM-P 260 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~nL~~~~-~ 260 (559)
++..+.+++.+....-.+ |...|..+.... ....+ .+..+..++... .+..+...++.+++.+.... .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 456666776663322222 444444443222 11122 244455555322 23456666666666654322 0
Q ss_pred ---------CCcHhhHhchHHHHHHhh----ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC---C
Q 042204 261 ---------RPIFEQVRPALPVLAQLV----HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR---S 324 (559)
Q Consensus 261 ---------~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~ 324 (559)
..........++.+...+ ...|.+-+.-++.+|+|+.. + ..++.+...+... +
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccc
Confidence 111222234444444444 45677888999999999862 1 2467777777765 4
Q ss_pred CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHH
Q 042204 325 SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN 403 (559)
Q Consensus 325 ~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~ 403 (559)
..+|..|+++|..++...+... .+.|..++.+ .++.++|..|..+|... ..+.. .+..+..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~-~P~~~---------~l~~i~~ 599 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC-NPSPS---------VLQRIAQ 599 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc-CCCHH---------HHHHHHH
Confidence 5688999999998877665433 3566777644 33678888887776543 12222 3444555
Q ss_pred HhhcC-ChhHHHHHHH
Q 042204 404 LLQNA-EINIKNWAAW 418 (559)
Q Consensus 404 lL~~~-~~~v~~~a~~ 418 (559)
.+..+ +..|...+..
T Consensus 600 ~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHTT-S-HHHHHHHHH
T ss_pred HHhhCchHHHHHHHHH
Confidence 55433 4555544433
No 265
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.09 E-value=11 Score=39.52 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=77.7
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
.|.+..+++.+.+++ ..+|+.++.+|+-+.. .-...+..+-.|.+..|.+-+-+..+.+|.+|+.+|+.+-+....-.
T Consensus 90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 467888888888988 8999999999999887 44444556667888888887778889999999999999875433211
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHH
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATW 250 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~ 250 (559)
......++..+..+++.++++.|+.
T Consensus 168 -----n~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 168 -----NRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred -----HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1134567777777888888886643
No 266
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.94 E-value=2.6 Score=36.09 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
+++..+.+.|+++++..++.|+..|..++..-......++.+.+++..|+.++.....+.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999987764455677888889999999999854448999999998888775
No 267
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.59 E-value=4.3 Score=34.80 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=61.8
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il 467 (559)
.+..|.+-|.++++.++..|+..|-.++.++.......+....++..|..++.. .++.|+..++..+....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999999988888888889999999999977 78899999998887754
No 268
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.53 E-value=54 Score=36.80 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 042204 368 KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCD 446 (559)
Q Consensus 368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 446 (559)
+.++..+..+++++|.......+ ..+|.|++-|+.. ...+|.+.+.+++.++..-+ .+ -...+|.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am-~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AM-TDRYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HH-HHHhhHHHHH
Confidence 45777888899999875444322 2678888888654 45777777777777776321 12 2347899999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhh
Q 042204 447 LLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 447 lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
.|.++++-|+.+++-.|.++++.+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999765
No 269
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.25 E-value=36 Score=34.50 Aligned_cols=266 Identities=13% Similarity=0.059 Sum_probs=136.3
Q ss_pred CHHHHHHHHHHHHHHhCCCchhhhhhhccC---CHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHH
Q 042204 198 NDDIREQAVWALGNVAGDSPRCRDLVLSEE---ALIPLLAQLN-EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPV 273 (559)
Q Consensus 198 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g---~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~ 273 (559)
+..+..+|+.+|+.+..+. ..-..+.+.- ++...+..+. ...+..+....+|+|+.=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6788899999999987543 2222221111 2333344442 334556677777777753222111111222233333
Q ss_pred HHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhc--CCh-HHHH-
Q 042204 274 LAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGHRSSSVLSPALQTIGHIVA--GDD-FQTQ- 347 (559)
Q Consensus 274 L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~--~~~-~~~~- 347 (559)
+..+-+ -+...+....+.++.++....+... .... -.++.++..+-+....++..|..++..+.. +.. ....
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333332 4566788889999999987666442 2222 378888888888777788776665554432 111 1111
Q ss_pred --HHHhC----C-----ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHcCCHHHHHHHhhcCChhHHHH
Q 042204 348 --CIINC----G-----ALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVIDAGLIGPLINLLQNAEINIKNW 415 (559)
Q Consensus 348 --~~~~~----g-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~~~i~~Li~lL~~~~~~v~~~ 415 (559)
..++. + +.+.|..++.+. +......-+|...-...+++. ..-..+ ...+...-....++|+.+|.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence 12222 2 233466666663 222333335544433334331 001111 113444444566789999988
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHcCChHHHHhcCCCC-Ch----HHHHHHHHHHHHHHHh
Q 042204 416 AAWAISNATSG--GSHEQIKYLVREKCIKPLCDLLPCA-NP----TIVTVCLKGLENILKV 469 (559)
Q Consensus 416 a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~-d~----~v~~~~l~~l~~il~~ 469 (559)
|..+-..++.. .+.......+.. +..|+...++.+ .. ++...++..+.+++-.
T Consensus 294 A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 294 AFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 87776665531 122222222221 344555555432 23 6677788888877744
No 270
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.99 E-value=3.2 Score=35.59 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK 173 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~ 173 (559)
.++..|.+.|++.++..++.|+..|..++.+-......++....++..|+.++.....+.++..++..+...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999877654566778888899999999998844489999999999888763
No 271
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.97 E-value=6.9 Score=35.65 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcC-CchhHHHHHhCCCH
Q 042204 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASK-TSEDTKVVIDHGAV 187 (559)
Q Consensus 113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i 187 (559)
..-...|+..|.-++|+ ++....++++-+--.+..+|... ..+-+|..++.+++.+... +++....+....++
T Consensus 114 snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 114 SNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 44566777777777665 45555555554433334444422 2256889999999998874 44455667778999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204 188 PIFVKLLASPNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 188 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
|.+++.+...++--+.-|+.++..|.+++..
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvG 222 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchh
Confidence 9999999999888888899999998877654
No 272
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.46 E-value=5.2 Score=34.03 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=60.1
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~~l~~l~~il 467 (559)
.+..+.+-|.++++.++..|+..|-.+..++.+.....+...+++..|+.++.. .++.|+..++..+...-
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455677778899999999999999999998888888888889999999999953 46789999998887755
No 273
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=86.26 E-value=23 Score=36.63 Aligned_cols=261 Identities=11% Similarity=0.105 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch-hhh--hhhccCCHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR-CRD--LVLSEEALIPL 232 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r~--~i~~~g~l~~L 232 (559)
+-+.....+++.-+-.+-......+++. .+..+....++ .++..-.....+++.+...... ..+ .-.+...++++
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 4455444555444443333333333321 22233333344 4565555555555555432111 111 11233456666
Q ss_pred HHHhchhhhHhHHHHHHHHHHHhhcCCC-CCcHhhHhchHHHHHHh-hccCCHhHHHHHHHHHHHhccCChhHHHHHHHh
Q 042204 233 LAQLNEHAKLSMLRTATWTLSNFCRGMP-RPIFEQVRPALPVLAQL-VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA 310 (559)
Q Consensus 233 l~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 310 (559)
...| +..-.+....+...|+.|....+ .........++|.|+.- +......+ -...+.|.......+..+ ...
T Consensus 123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~ 197 (435)
T PF03378_consen 123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VAN 197 (435)
T ss_dssp HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cch
Confidence 6666 33334566666777777766554 22222334444444322 22111111 222223332222222111 111
Q ss_pred ----CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-C
Q 042204 311 ----GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ-TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-G 384 (559)
Q Consensus 311 ----g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~ 384 (559)
+++...-+++.+... -..+...|..+...-+.. .+..+. .++..+..-|++....+..+.-+..++.++. .
T Consensus 198 ~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 198 NQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 233444455555432 245777787777655431 121221 3455566666544355666666666666654 3
Q ss_pred CHHHHHHHHH---cCCHHHHHHHh--h---c-CChhHHHHHHHHHHHHhcC
Q 042204 385 NREQIQAVID---AGLIGPLINLL--Q---N-AEINIKNWAAWAISNATSG 426 (559)
Q Consensus 385 ~~~~~~~li~---~~~i~~Li~lL--~---~-~~~~v~~~a~~aL~nl~~~ 426 (559)
+++..-..++ .|++..++.-+ . . ..+.-|+.++-+++++...
T Consensus 275 g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 275 GPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp -HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 4554444443 45555555422 1 1 2334466777777776654
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.22 E-value=5.7 Score=33.97 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=61.2
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~ 468 (559)
.+..|.+-|.++++.++..|+..|-.++.++.......+...++++.|..++. ..++.|+..++..+.....
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46667777888999999999999999999887878888888999999999986 4677899999988887653
No 275
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.50 E-value=63 Score=35.60 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=138.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCC--CHHHHHHHHHHHHHHhCCCchh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASP--NDDIREQAVWALGNVAGDSPRC 219 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~--~~~v~~~a~~~L~nl~~~~~~~ 219 (559)
.+..+-+-|.-.|...-|..|+..+..++.........++. +.+..+++ +..++ +..-++.++.....++......
T Consensus 362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~ 440 (960)
T KOG1992|consen 362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTA 440 (960)
T ss_pred HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchh
Confidence 33333344443442234566777777777754333333332 33444443 33333 3444556666666666443222
Q ss_pred hhhhhccC----CHHHHHHH----hch-h-hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHH
Q 042204 220 RDLVLSEE----ALIPLLAQ----LNE-H-AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDA 289 (559)
Q Consensus 220 r~~i~~~g----~l~~Ll~l----l~~-~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a 289 (559)
+.-+...+ .+..+.+. |.. + .+-.+.+.. ++-.+..............++|.++.+|..+..-+-.+|
T Consensus 441 ~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~--aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYA 518 (960)
T KOG1992|consen 441 KHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKAD--AIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYA 518 (960)
T ss_pred hcceeeccccccHHHHHHHHhhHHhccCccccccchhhc--ccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence 22222111 12222211 211 0 111122211 111111111233334456788999999999888899999
Q ss_pred HHHHHHhccCChhHHHHHHHhC-c-------HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHh---CCChHHH
Q 042204 290 CWALYFLSNGKNDKIQAVIEAG-V-------CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN---CGALPYL 358 (559)
Q Consensus 290 ~~~L~~l~~~~~~~~~~~~~~g-~-------l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~---~g~l~~L 358 (559)
+.++-.+....+..-..+...+ + +..|+..++.+...--....+++..+..-.+..+..... .+.-+.+
T Consensus 519 A~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv 598 (960)
T KOG1992|consen 519 AIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIV 598 (960)
T ss_pred HHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHH
Confidence 9888776533332101111111 1 222333333333322233444444444433333211111 1222333
Q ss_pred HHHhcCCCchhHHH---HHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC---CHHH
Q 042204 359 LVLLIHSHKKSIKN---HACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG---SHEQ 431 (559)
Q Consensus 359 ~~lL~~~~~~~v~~---~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~ 431 (559)
...-+++.+|..-. ++..++-+.+. .++..+..+.+ .++|.+..+|..+-.+..-.+...++-+.... -++.
T Consensus 599 ~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~-aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 599 EEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE-ALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 33345554444332 33333434433 44554444444 48888888887765566666666665555432 2233
Q ss_pred HHHHH----------HcCChHHHHhcCC
Q 042204 432 IKYLV----------REKCIKPLCDLLP 449 (559)
Q Consensus 432 ~~~l~----------~~~~l~~L~~lL~ 449 (559)
...+. ..|-+++++.+|.
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 22221 2577888887763
No 276
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.41 E-value=20 Score=39.36 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=107.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.|..++..|.|.|.....++...+...+..++.+ . ++..|+...-+..+ ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 4678899999999888888888888876654222 1 35566665433331 335556654433 2112
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
..+..|-.++.. +..|-.++..|+.+....|..-..|.+...+..|+..|..+.+..+...|+.+|.-|.-.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 233445555553 4677789999999998888777888899999999999988888888888888888887655
Q ss_pred CCCcHhhHhchHHHHHHhh
Q 042204 260 PRPIFEQVRPALPVLAQLV 278 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL 278 (559)
|.........++.++..++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444555555555555
No 277
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=34 Score=39.79 Aligned_cols=136 Identities=14% Similarity=0.106 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHH-Hh-CCCHHHHHH--hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHH
Q 042204 158 QLQYEAAWALTNIASKTSEDTKVV-ID-HGAVPIFVK--LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL 233 (559)
Q Consensus 158 ~~~~~a~~~L~nl~~~~~~~~~~i-~~-~g~i~~L~~--lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll 233 (559)
.++..++-++.+.+..+......+ ++ .|.+-.... ...++..+++...+.++.++....-+ .++. | .+.+.
T Consensus 811 s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~ 885 (1610)
T KOG1848|consen 811 SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVF 885 (1610)
T ss_pred HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHH
Confidence 444445555555554332222222 22 233333333 23446778888888888888643222 2222 2 33344
Q ss_pred HHhc---h---hhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhcc
Q 042204 234 AQLN---E---HAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 234 ~ll~---~---~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~ 298 (559)
..+. . .....+.+.+..+|.-++.+. +......+.+++..+..+-. ..|..+--.|+..++.+++
T Consensus 886 eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 886 EMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 4432 1 124567777888888888776 66667777888888877764 4466777677666666653
No 278
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=61 Score=35.05 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=134.7
Q ss_pred HhchHHHHH-HhhccCCHhHHHHHHHHHHHhccCC--hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204 267 VRPALPVLA-QLVHSNDKEVLTDACWALYFLSNGK--NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 267 ~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 343 (559)
..++++.+. +.++-+...+-...-..|++..... ....+.++-.=.=|.|..-|+-.+..||..|+..+-++----+
T Consensus 127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d 206 (1005)
T KOG1949|consen 127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD 206 (1005)
T ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence 355555543 3344344445555555666655322 1111222222223445566777899999999999988764222
Q ss_pred -----HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCC----HHHHHHHhh-cCChhHH
Q 042204 344 -----FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL----IGPLINLLQ-NAEINIK 413 (559)
Q Consensus 344 -----~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~----i~~Li~lL~-~~~~~v~ 413 (559)
+..+.+++ +-...|.++|.++ -+.||..|..-++.+... .-.++-..+ +..+++-+. +...+||
T Consensus 207 pd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 207 PDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 23344444 3467899999999 999999999888877642 112222222 223333332 2345888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA 493 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~ 493 (559)
..+...|..+..+. ... .+.+. +++.|-..+.+....|+.+..+.|..|=..- +.....-+
T Consensus 281 ~svf~gl~~~l~np--~sh-~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr---------------a~~f~~I~ 341 (1005)
T KOG1949|consen 281 CSVFKGLPMILDNP--LSH-PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVR---------------AAKFWKIC 341 (1005)
T ss_pred hhHhcCcHHHHcCc--cch-hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhh---------------hhhhhccc
Confidence 88888888887642 221 12222 4567777778888899999888887754221 12222222
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCC
Q 042204 494 EGLEKIENLQSHENNEIHEKSVKILETYWCGRVV 527 (559)
Q Consensus 494 g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~ 527 (559)
-.-..|..|...+-+--+..+.-|+.-||+..-+
T Consensus 342 ~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ 375 (1005)
T KOG1949|consen 342 PMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKP 375 (1005)
T ss_pred cHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCc
Confidence 2234455555555555555666777778775543
No 279
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.81 E-value=3.4 Score=38.19 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCCC-------HHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch-hhhhhhccCC
Q 042204 158 QLQYEAAWALTNIASKTSEDTKVVIDHGA-------VPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR-CRDLVLSEEA 228 (559)
Q Consensus 158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~ 228 (559)
.=|..|+.+|++++- .+.+.+.+...+- +..|++++.. +++-.||.|+-.|.+++..+.. +|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458899999999998 5666666665553 4445555544 7889999999999999965544 5566678889
Q ss_pred HHHHHHHhc
Q 042204 229 LIPLLAQLN 237 (559)
Q Consensus 229 l~~Ll~ll~ 237 (559)
+..|+..+.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999984
No 280
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=45 Score=35.72 Aligned_cols=288 Identities=13% Similarity=0.156 Sum_probs=149.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+..+=+.+.+++..++--|+-.+.-.-++..++ ++ .++-.|-..+++++ ..++..|+.-|+-.-.++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~d-----palALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-CD-----PALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-cC-----HHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 4566666677777666655554443322221111 10 12334556667777 578888877777655543 333
Q ss_pred HHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 180 VVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
.+.. .|..++.+ ...++.-.|..+|+.+...+.. ..+ ...+++.++..-.........+.....|.-+..
T Consensus 487 ~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 3322 45556655 3456777778888887644322 111 111234444332212233445555445555544
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc---cCChhHHHHHHHhCcHHHHHHhhCCCC---CcchhhH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS---NGKNDKIQAVIEAGVCPRLVELLGHRS---SSVLSPA 331 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~~a 331 (559)
++. ..+...+.-+..-...+...+-..+...+ .++.-.++. ..+..+-.... ..-+..|
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~-------q~ll~~cgE~~~~~e~~~~~a 623 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS-------QLLLSFCGEHDADLESEQELA 623 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech-------hhhhhhcCCCccchhhhccch
Confidence 431 11111222222112222222211111111 111111111 11222222211 1223356
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChh
Q 042204 332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEIN 411 (559)
Q Consensus 332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~ 411 (559)
+--++-++-+.+-..+. .+..+-.+|..+ ++.+|+..=.+++-++..+|.. +++..|-+...+.|.+
T Consensus 624 vLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~e 690 (878)
T KOG2005|consen 624 VLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLE 690 (878)
T ss_pred hhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchH
Confidence 66666677666644443 356677888888 9999999989998887766652 4677888888889999
Q ss_pred HHHHHHHHHHHHhcCCCHHHH
Q 042204 412 IKNWAAWAISNATSGGSHEQI 432 (559)
Q Consensus 412 v~~~a~~aL~nl~~~~~~~~~ 432 (559)
+...++.+++-+-.+.....+
T Consensus 691 va~naIfamGLiGAGTnNARl 711 (878)
T KOG2005|consen 691 VAMNAIFAMGLIGAGTNNARL 711 (878)
T ss_pred HHHHHHHHhccccCCcchHHH
Confidence 999999999877666444433
No 281
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.49 E-value=8.9 Score=32.35 Aligned_cols=72 Identities=6% Similarity=-0.005 Sum_probs=60.4
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC---CChHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC---ANPTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~d~~v~~~~l~~l~~il~ 468 (559)
.+..|.+-|+++++.++..|+..|-.+..++.+.....+.....+..|..++.. .++.|+..++..+...-.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456677778899999999999999999999888777777777888889999865 477899999998887654
No 282
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.45 E-value=4.9 Score=33.94 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHH-HHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~-~~~~a~~~L~nl~~ 172 (559)
.++..+.+.|+++++..++.|+..|-.++..-..+...++....++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999877644556777778889999999988765333 88888888877665
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.89 E-value=7.6 Score=32.76 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcC
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQYEAAWALTNIASK 173 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~--~~~~~~~~a~~~L~nl~~~ 173 (559)
.++..|.+.|+++++..++.|+..|..++..-..+...++....++..|+.++... ..+.++..++..+.+.+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999999987765344566666668888899999763 3379999999999887763
No 284
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=83.66 E-value=40 Score=31.83 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=72.6
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCCHH
Q 042204 309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITAGNRE 387 (559)
Q Consensus 309 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~ 387 (559)
+...++.++++++.++. ..-..+|..++..-..+-..+-.|-++.|..++.++. +.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 34568999999977654 2333444444433333333334467788888887652 456888899999999876566
Q ss_pred HHHHHHHcCCHHHHHHH-hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204 388 QIQAVIDAGLIGPLINL-LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC 445 (559)
Q Consensus 388 ~~~~li~~~~i~~Li~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 445 (559)
.+..+++ .+..++.. +...+..+...-+..++.+-...--..++.+...|+++..+
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 5666655 34444444 43333332333333333332221223455566677776533
No 285
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.39 E-value=3 Score=38.53 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHhcC-------cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH-HHhCC
Q 042204 114 NLQLEATTKFRKLLSIERSPPIEEVIQSG-------VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV-VIDHG 185 (559)
Q Consensus 114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g-------~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~-i~~~g 185 (559)
.-|..|+.+|.|+.-. ..+.+.++..+ ++..|+++|....++-.|+-|+-.|.+++.++...... -.+.+
T Consensus 139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 5678899999997433 34444444433 45667777777666899999999999999987776644 45678
Q ss_pred CHHHHHHhhCCCC
Q 042204 186 AVPIFVKLLASPN 198 (559)
Q Consensus 186 ~i~~L~~lL~~~~ 198 (559)
.|..|+.++.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997543
No 286
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.36 E-value=16 Score=35.33 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=75.2
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh----cCC--------CCChHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCD----LLP--------CANPTIVTVCLKGLE 464 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~----lL~--------~~d~~v~~~~l~~l~ 464 (559)
++|.++.++++.++.+|..++.++..+........-..+.+.|..+.+.+ ++. .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999998655444344566776444333 333 345678888999999
Q ss_pred HHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 465 NILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 465 ~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
.++......... .....+.. +-..|.+..++.-...+++++.....+.+..++
T Consensus 200 ~L~~~~~~~~~~----~r~~~l~~-~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 200 SLLKTQENDDSN----PRSTWLDK-ILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHhhccCCcc----cchHHHHH-HHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 987764322111 01122223 333444444444333345777666655555444
No 287
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.09 E-value=53 Score=38.34 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 453 PTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 453 ~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
.+.....+.+|.+++.-.-+.- -..|.+....++. ++-+..+..+.++++.-.|...+++.
T Consensus 1070 tet~~ltisgIaklf~e~fk~l------lnln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLL------LNLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH------HhcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 3555667777777774332211 1234455555433 56677778889999988888877764
No 288
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.97 E-value=19 Score=29.80 Aligned_cols=74 Identities=12% Similarity=0.281 Sum_probs=51.6
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH-hccHHHHHHHhc--------CCCHHH
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE-AEGLEKIENLQS--------HENNEI 510 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~-~g~l~~l~~L~~--------~~~~~v 510 (559)
+++.|..-|+.+++.|...+|.+|..++..+.. .+...+.+ ...+..+.+... ..+..|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~------------~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V 106 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS------------DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV 106 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH------------HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence 567788888888999999999999999977542 23433332 233333344333 245679
Q ss_pred HHHHHHHHHhhcCCC
Q 042204 511 HEKSVKILETYWCGR 525 (559)
Q Consensus 511 ~~~a~~il~~~f~~~ 525 (559)
+..|..++.-.|+.+
T Consensus 107 R~~A~El~~~if~~~ 121 (122)
T cd03572 107 REEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999988764
No 289
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.79 E-value=70 Score=35.42 Aligned_cols=253 Identities=11% Similarity=0.071 Sum_probs=146.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+..+=++++++....|.++...+-++.... +.+ .++++ .+=.|...+..++ -.+|...+++...--. ...
T Consensus 25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln 95 (970)
T KOG1988|consen 25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLN 95 (970)
T ss_pred HHHHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cch
Confidence 4456667899888888888888888876542 222 23322 3334555566677 5888888887763222 122
Q ss_pred HHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 180 VVI-DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 180 ~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.+. -...+........+.++.-|..++..++.+..- +.+.+....++..-..+.+.--.+.++.+....+..
T Consensus 96 ~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~l-------ipEfn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~ 168 (970)
T KOG1988|consen 96 KVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSAL-------IPEFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQ 168 (970)
T ss_pred hhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhh-------cccccchhHHHHHHhcCccchhhHHHHHHHhhhhhh
Confidence 221 122334444455678899999999999988543 334445566665543343333445666666666554
Q ss_pred CCCCcHhhHhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHH
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTI 335 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L 335 (559)
.. .....+.-.+..++...+ +......+.+++.+.... .....+....+.++.. +...-...-+.++
T Consensus 169 sk----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~~tps~d~~v~fL~st 238 (970)
T KOG1988|consen 169 SK----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVSGTPSIDRVVAFLYST 238 (970)
T ss_pred hh----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhcCCCcccceeeehhhh
Confidence 31 111222233344444333 445667777888776432 2222344556666544 4445556677788
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
.+++...-.. -.+-+..|.+.++.++...++..+.|-+.+++.
T Consensus 239 T~Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 239 TNLASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 8877633221 124567788888766466677778888877753
No 290
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.78 E-value=6.8 Score=33.30 Aligned_cols=74 Identities=9% Similarity=-0.002 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..+.+.|+++++..++.|+..|..++..-......++...+++..|++++.. ...+.++...+..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999988776545667788888999999999963 1237899999888887765
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.77 E-value=13 Score=30.81 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=53.4
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhcCCCCC--------hHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE-KCIKPLCDLLPCAN--------PTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d--------~~v~~~~l~~l~~il 467 (559)
++..|.+-|++.++.|+..++..|..++..|.+.....+.+. ..|..+.+.-...| ..|+..|-+++..|+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 456788888888999999999999999999988877776653 34555555544233 367777878877766
Q ss_pred H
Q 042204 468 K 468 (559)
Q Consensus 468 ~ 468 (559)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 3
No 292
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=56 Score=37.00 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC---CCChHHHHHHHHHHHH
Q 042204 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP---CANPTIVTVCLKGLEN 465 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---~~d~~v~~~~l~~l~~ 465 (559)
.+.+..+|.+..+++.+-...++++.+-+..+..++.. ++.....+-..|+++.|.+++. +........++.++..
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 45677899999999999888899999999999998886 5556666667788888887763 2334445555554443
No 293
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.50 E-value=32 Score=30.25 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=69.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC--CHHHHHHhhCC-CCHHHHHHHHHHHHHHh---CCC
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG--AVPIFVKLLAS-PNDDIREQAVWALGNVA---GDS 216 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~ 216 (559)
.+..+..+|++.+ +.-|..++..+..++..++ .+.+.+.+ -+..++..|+. ....+.+.|+.+|..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788898888 7888888888887777332 34443433 46778888876 45677888888888886 344
Q ss_pred chhhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCC
Q 042204 217 PRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 217 ~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~ 260 (559)
|+....+.. ..++.++..+.+- .+......++.+|..+....|
T Consensus 103 p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 443222221 2233333332111 114556667777777766543
No 294
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.40 E-value=12 Score=29.65 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=56.6
Q ss_pred HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 042204 437 REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVK 516 (559)
Q Consensus 437 ~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~ 516 (559)
...++..|+.-+..+.+.....++..+..+++... -...+.+.|+.+-+.++..+-+++.+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 34567777777888887788899999999875432 4677889999999999999999999988888
Q ss_pred HHHh
Q 042204 517 ILET 520 (559)
Q Consensus 517 il~~ 520 (559)
++++
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8764
No 295
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=82.38 E-value=6.3 Score=43.52 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=88.0
Q ss_pred chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh
Q 042204 327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ 406 (559)
Q Consensus 327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~ 406 (559)
++..+.-+|+++|-..+...+ ..+|.|++-|.......+|.....+++.+|... ..+++ ..+|.+-..|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTD-RYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHH-HhhHHHHHHhc
Confidence 456677778888776554433 457888888866546778877777777777531 12333 37899999999
Q ss_pred cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC--hHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 407 NAEINIKNWAAWAISNATSGGSHEQIKYLVREKC--IKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 407 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
++++-+|+.+...|.++...+ ++-..|. +..+..++ +.+++++.-+-..|..+++..
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998753 2222332 34444444 567778877777888877653
No 296
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.20 E-value=20 Score=34.80 Aligned_cols=138 Identities=14% Similarity=0.209 Sum_probs=74.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-HHHHhCCCHHHHHH----hhC--------CCCHHHHHHHHHHH
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT-KVVIDHGAVPIFVK----LLA--------SPNDDIREQAVWAL 209 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 209 (559)
++|.++.++++.+ +.++..++.+|..+....+... ..+.+.|..+.+-+ ++. .+...+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 7899999999988 9999999999999998443333 34666776554443 333 24455666777777
Q ss_pred HHHhCC----CchhhhhhhccCCHHHHHHHhchhh---hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC
Q 042204 210 GNVAGD----SPRCRDLVLSEEALIPLLAQLNEHA---KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN 281 (559)
Q Consensus 210 ~nl~~~----~~~~r~~i~~~g~l~~Ll~ll~~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~ 281 (559)
..++.- ....|......-.-..++.-+.... .+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777431 1111111111111111222222222 24555555555555544322223333455666666655443
No 297
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=81.88 E-value=14 Score=45.97 Aligned_cols=264 Identities=16% Similarity=0.169 Sum_probs=137.1
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCC-----chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERS-----PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID 183 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~-----~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 183 (559)
...+.+.+..+...+..++..... +..-.. -..++..+..+-..+.++.++......+. ...-....+
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ 563 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQV-VKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ 563 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHH-HHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence 355667777776665555443211 111111 11233333333222222566555444443 112223444
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCC
Q 042204 184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 184 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
.+.+..+...+..+.-.+++.+...+++++..+|.+.--.+. ...+..+. .+.-.-+......-+..+....+
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 555666777777888889999999999998866632111111 01111111 11100000111111111111111
Q ss_pred CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhh
Q 042204 261 RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIV 339 (559)
Q Consensus 261 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~ 339 (559)
......+...+..++..+...+..+...+..+++.|+..........++ ..++.+.+.+.. .+..-+..++++++++.
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1122233445566667777788888889999999998665544444444 455555555544 44556788999999998
Q ss_pred cCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204 340 AGDDFQTQCIINC-GALPYLLVLLIHSHKKSIKNHACWTISKITAG 384 (559)
Q Consensus 340 ~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 384 (559)
...........+. -++..+...+.......+|.++...++++...
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 7654322212111 34555666666555677888888888877553
No 298
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.80 E-value=39 Score=30.40 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=87.8
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAV 307 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 307 (559)
++.+++.. .+.+..++..|+..+.-+.+.. -.| ..++|.++.+..++++.++..|...+..+.+..+..+..-
T Consensus 10 l~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 10 LKNILELC-LSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55566655 5677889999999998888765 222 4588999999999999999999999999986665554443
Q ss_pred HHhCcHHH--HHHhhCCCCC-cc---hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-------chhHHHHH
Q 042204 308 IEAGVCPR--LVELLGHRSS-SV---LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-------KKSIKNHA 374 (559)
Q Consensus 308 ~~~g~l~~--L~~lL~~~~~-~v---~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-------~~~v~~~a 374 (559)
...|+-.. ....+..+.. .. ....+..+..++.++...+..+ +..|++.+.... .+.-....
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHH
Confidence 33332221 1111222211 11 4455666666666555554433 444555554320 23334556
Q ss_pred HHHHHHhhc
Q 042204 375 CWTISKITA 383 (559)
Q Consensus 375 ~~~L~nl~~ 383 (559)
+++..|++.
T Consensus 159 ~Fla~nLA~ 167 (187)
T PF12830_consen 159 LFLAENLAT 167 (187)
T ss_pred HHHHHHHhc
Confidence 666666664
No 299
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.61 E-value=50 Score=31.53 Aligned_cols=179 Identities=18% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-------hhhhhhccCCHHHHHHHhchhh---hHhHHHHHHHHHHHhh
Q 042204 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPR-------CRDLVLSEEALIPLLAQLNEHA---KLSMLRTATWTLSNFC 256 (559)
Q Consensus 187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-------~r~~i~~~g~l~~Ll~ll~~~~---~~~~~~~a~~~L~nL~ 256 (559)
.+.+.+-+.++ ...+.++..|..++..... .|-.+.-.+.+|.++..+.+.. .......++..|+.+|
T Consensus 66 q~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 66 QPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 33344444443 3445567777777643211 1222222223444555553222 1234556677888888
Q ss_pred cCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204 257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336 (559)
Q Consensus 257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 336 (559)
........ ..++.....--..+..+....++..|+.-. -++. +..++..|+.+|.++.+.++..++.+|.
T Consensus 144 ~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 144 EAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 65432221 111111111111233445555555555432 1111 1235677899998888899999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
.+...-+-... ....++..+..+++++ .-.+|..+|-++..
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 99876554322 4556788999999776 46677777766654
No 300
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.05 E-value=1.1e+02 Score=34.97 Aligned_cols=294 Identities=16% Similarity=0.115 Sum_probs=153.0
Q ss_pred hHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--
Q 042204 97 RLEIFAAMVA-GVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK-- 173 (559)
Q Consensus 97 ~~~~l~~lv~-~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-- 173 (559)
+++++..+-. .|++.+.+.+...+..+.++.+.. ..+-...-+.--+|.|+.-+..-. ..+|...+.+|---...
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence 4455544444 456778888888888888876543 444444445567888887776655 46776666655432220
Q ss_pred CchhHHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204 174 TSEDTKVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL 252 (559)
Q Consensus 174 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L 252 (559)
.-..+. +-.|+-+|+.+ ...++...+.....+...+..+++.+.+-|.+..|-..++++.-..--.. ..-.
T Consensus 542 cvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-ysgv 613 (2799)
T KOG1788|consen 542 CVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-YSGV 613 (2799)
T ss_pred cCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-hhhH
Confidence 001111 22355566653 34555556666666666667788888888988888877754310000000 0011
Q ss_pred HHhhcCCC-CCcHhhH---hchHHHHHHhhcc---CCHh--H---HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204 253 SNFCRGMP-RPIFEQV---RPALPVLAQLVHS---NDKE--V---LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL 320 (559)
Q Consensus 253 ~nL~~~~~-~~~~~~~---~~~l~~L~~lL~~---~d~~--v---~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL 320 (559)
+.....+| .+.+... ...+-.--.++.+ .++- + ..-.-.+|..+..++.++...+.++..+..+++++
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl 693 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL 693 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence 11222211 1111110 0011000111222 1110 0 11123355566666666767777777777777777
Q ss_pred CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-----------chhHHHHHHHHHHHhhcCCHHHH
Q 042204 321 GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-----------KKSIKNHACWTISKITAGNREQI 389 (559)
Q Consensus 321 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~ 389 (559)
- ++.-|...++++..+...++.+.. +.-+-.++..|++.- .....+....++..+..-+....
T Consensus 694 i--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq 767 (2799)
T KOG1788|consen 694 I--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ 767 (2799)
T ss_pred e--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence 4 445578889999998887765332 112334555565420 12234444555555543233333
Q ss_pred HHHHHcCCHHHHHHHhh
Q 042204 390 QAVIDAGLIGPLINLLQ 406 (559)
Q Consensus 390 ~~li~~~~i~~Li~lL~ 406 (559)
..+-+++++..|...|.
T Consensus 768 rvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 768 RVFGEATGFSLLLTTLH 784 (2799)
T ss_pred eehhccccHHHHHHHHH
Confidence 44556777777776663
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.56 E-value=27 Score=29.44 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=58.9
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC--hHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN--PTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~~l~~l~~il~ 468 (559)
.+..|.+-|.++++.++..|+..|-.+..++.......+...+++..|..++.... +.|+..++..+.....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999999988888888888899999999987643 3388888887776543
No 302
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.43 E-value=82 Score=32.66 Aligned_cols=261 Identities=11% Similarity=0.094 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh----chhhhHhHHHHHHHHHHHhhcCC----CCCcHhhHh
Q 042204 197 PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL----NEHAKLSMLRTATWTLSNFCRGM----PRPIFEQVR 268 (559)
Q Consensus 197 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll----~~~~~~~~~~~a~~~L~nL~~~~----~~~~~~~~~ 268 (559)
+++.+-+..++++.-+..+-......+ ++.|+..+ ++..++..-.....+++.+.+.. +........
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~i-----l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~ 116 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEI-----LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEE 116 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHH-----HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHH
Confidence 455566655666555443333322222 33333333 23345555555555555555443 222224457
Q ss_pred chHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204 269 PALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347 (559)
Q Consensus 269 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 347 (559)
.++|.+...|+.+-.+..-++...++.+.+..+ ....... ..+++.|+.-.-.....-.-...+.|..+.......
T Consensus 117 ~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~-- 193 (435)
T PF03378_consen 117 ALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF-- 193 (435)
T ss_dssp HHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh--
Confidence 788999999988888888889999988885544 1111000 012222221111111112233455666655533322
Q ss_pred HHHhC----CChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhc-CChhHHHHHHHHHH
Q 042204 348 CIINC----GALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQN-AEINIKNWAAWAIS 421 (559)
Q Consensus 348 ~~~~~----g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~~a~~aL~ 421 (559)
+... +++..+-.++.+. . --.++...|..+... ..+..+..+.. ++..|..-|++ ...+..+..+..++
T Consensus 194 -i~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 194 -IVANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp -----S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred -hcchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 2222 3344445566554 2 224566677766653 33344444433 55666666654 35555555555555
Q ss_pred HHhcCCCHHHHHHHHH---cCChHHHHhcC------CCCChHHHHHHHHHHHHHHHhh
Q 042204 422 NATSGGSHEQIKYLVR---EKCIKPLCDLL------PCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 422 nl~~~~~~~~~~~l~~---~~~l~~L~~lL------~~~d~~v~~~~l~~l~~il~~~ 470 (559)
.++....+......++ .|+...+..-+ +-..+.-++.+.-++.+++...
T Consensus 269 ~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 269 LFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 5554334444444443 34444333321 1233344666666777777543
No 303
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.00 E-value=99 Score=33.35 Aligned_cols=282 Identities=11% Similarity=0.092 Sum_probs=138.2
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHH----HHHHHHHHHHhcC--CchhHHHHHh
Q 042204 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ----YEAAWALTNIASK--TSEDTKVVID 183 (559)
Q Consensus 110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~----~~a~~~L~nl~~~--~~~~~~~i~~ 183 (559)
++.+-.++-|..+|.+++++..+-+... ...+-..+++.|.... |.++ ..-+..++.+..- ...++...+-
T Consensus 50 gs~pYs~mlAst~L~Klvs~~t~lpl~q--rldir~Yilnylat~~-Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F 126 (1082)
T KOG1410|consen 50 GSYPYSQMLASTCLMKLVSRKTPLPLEQ--RLDIRNYILNYLATGA-PKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF 126 (1082)
T ss_pred CCCchHHHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHHhccccccccccchh
Confidence 4456778888889999888754333322 3335566777777644 3333 3333334444331 2233344444
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc
Q 042204 184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263 (559)
Q Consensus 184 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~ 263 (559)
.+.+..+.++|+..+.+-...++..|..+..+-... +-.....--..+..-++++.=.++...++..|.....-. ..
T Consensus 127 Rd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~-~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~n--ln 203 (1082)
T KOG1410|consen 127 RDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQA-DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLN--LN 203 (1082)
T ss_pred hhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCC-CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccC--cc
Confidence 567788888888877766666777777665221100 000000001122222222222344455555555444211 11
Q ss_pred HhhHhchHHHHH----Hhhc-----cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204 264 FEQVRPALPVLA----QLVH-----SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT 334 (559)
Q Consensus 264 ~~~~~~~l~~L~----~lL~-----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 334 (559)
.....+.+..++ ..+. +.-++..++- ++. .-+......+.+...++....+..+-.+..-..|+.+
T Consensus 204 d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~----ctV-QIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsc 278 (1082)
T KOG1410|consen 204 DRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDL----CTV-QIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSC 278 (1082)
T ss_pred cHhHhhHHHHHHHHHhhhccccccccccccccccc----cce-ecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHH
Confidence 111122222222 2221 1111111111 010 0122223345566678888888888888888889999
Q ss_pred HHHhhcC------ChHHHHHHHhCCChHHHHHHhcCCC---chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh
Q 042204 335 IGHIVAG------DDFQTQCIINCGALPYLLVLLIHSH---KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL 405 (559)
Q Consensus 335 L~nl~~~------~~~~~~~~~~~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL 405 (559)
|..+++- +.++...+. ..+.-...+|.++. ++.--.+-|+.|+.+- ..-+...++.-...+..++++
T Consensus 279 lvqlASvRRsLFN~aeRa~yl~--~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk--tNYQL~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 279 LVQLASVRRSLFNGAERAKYLQ--HLVEGVKRILENPQGLSDPANYHEFCRLLARLK--TNYQLGELVKVECYPEVIRLI 354 (1082)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH--hhhhhHhhhccCCcHHHHHHH
Confidence 9888752 222222111 23334444554432 4555667777777763 234455566555566666655
Q ss_pred h
Q 042204 406 Q 406 (559)
Q Consensus 406 ~ 406 (559)
.
T Consensus 355 A 355 (1082)
T KOG1410|consen 355 A 355 (1082)
T ss_pred H
Confidence 4
No 304
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.96 E-value=24 Score=31.46 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
-+|.++++|...+...++-|...+..++.....+.+-.++ .-+++.+.+.|++.+ +++...++.+|..++..++..-.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhhhhhH
Confidence 6899999999988888999999999988762233333333 236667778888888 99999999999999764443333
Q ss_pred H
Q 042204 180 V 180 (559)
Q Consensus 180 ~ 180 (559)
+
T Consensus 117 a 117 (183)
T PF10274_consen 117 A 117 (183)
T ss_pred H
Confidence 3
No 305
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.13 E-value=1.2e+02 Score=33.91 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=68.4
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccc
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNM 476 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~ 476 (559)
+...+...+..++..+.+.++.++.++..-....... ...-++.-..-.+..-..+...+..+|.++...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~------- 511 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDF------- 511 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 4455566666677777777888877776531100000 000011111111111122333344444444433
Q ss_pred ccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCC
Q 042204 477 DTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRV 526 (559)
Q Consensus 477 ~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~ 526 (559)
.+.....++.+.+....+-.+.-|+++++|+.|.++|...|+.+.
T Consensus 512 -----~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 512 -----DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred -----CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 345578888888999999999999999999999999999997543
No 306
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.87 E-value=8.4 Score=37.00 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchHHHHHhcC--cHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCCchhH-HHHHhC
Q 042204 111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSG--VVPRFVEFLMRED---YPQLQYEAAWALTNIASKTSEDT-KVVIDH 184 (559)
Q Consensus 111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g--~v~~Lv~lL~~~~---~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~ 184 (559)
..+..++.+++.+.++.+. ...+..+.... .+...+..+.... +..+|..++..+.|++......+ ..-...
T Consensus 122 ~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 5678899999999999876 55566665432 2333333333331 37999999999999987322222 111111
Q ss_pred CCHHHHHHh-hCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCH
Q 042204 185 GAVPIFVKL-LAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL 229 (559)
Q Consensus 185 g~i~~L~~l-L~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l 229 (559)
..+..+++. ... .+++....++.+||++...++..+......++-
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~ 246 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVK 246 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChH
Confidence 245566663 333 689999999999999997666655554444433
No 307
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=77.71 E-value=56 Score=41.09 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC----Cc--HhhHhchHHHHH
Q 042204 202 REQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR----PI--FEQVRPALPVLA 275 (559)
Q Consensus 202 ~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~----~~--~~~~~~~l~~L~ 275 (559)
...|.+.++++-...... .-.+...+.......+.+++.++..+++.+....+. .. ...+...+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 455778888874322111 112344344433556778888887666666554422 11 112344444444
Q ss_pred Hhh-ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCC
Q 042204 276 QLV-HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA 354 (559)
Q Consensus 276 ~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~ 354 (559)
.+- ...++.++......+. ..........+.+..+...+....-.++..+...+|+++.+++...-.-+..-.
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 333 3456666655554443 222234455566667777777788889999999999999988854433333333
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 042204 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKY 434 (559)
Q Consensus 355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 434 (559)
+..+-.+..+. ...+..+.+.-+..+..+.+..+...++. ++..++..+.+.+..+.+.+..++..|+..+..+ ...
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~~-~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~-~~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVGP-ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE-MVK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcCc-hHHHHHHHHhccchhhHHHHHHHHHHHHHhccch-hhh
Confidence 33333333333 33333333333333333334433433333 5567777778888889999999999998765422 222
Q ss_pred HHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHh
Q 042204 435 LVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 435 l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~ 469 (559)
.++ .+++.+.+.+. .....-+.++++.+.++...
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 223 34455555443 33445566777777776654
No 308
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.95 E-value=27 Score=34.88 Aligned_cols=216 Identities=18% Similarity=0.115 Sum_probs=107.4
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
..++..|..++..+.++......+.++..-...- ..-+...++..+.+-+++..+.+|..-+.+++.+....+...
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3466677777776655666666666666544311 111223456777778888777799888888888764111100
Q ss_pred hhhhccCCHHHHHHHhchhhh---HhHH---HHHHHHHHHhhcCC-CCCcH-hh-----HhchHHHHH---Hhhcc-CCH
Q 042204 221 DLVLSEEALIPLLAQLNEHAK---LSML---RTATWTLSNFCRGM-PRPIF-EQ-----VRPALPVLA---QLVHS-NDK 283 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~---~~~~---~~a~~~L~nL~~~~-~~~~~-~~-----~~~~l~~L~---~lL~~-~d~ 283 (559)
..-.-..+++.|+..+..... .... -.++.++.-++... +.... .. ..+-=|.++ ++... .++
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~ 176 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence 011112356666666632211 1100 01111111111111 00000 00 000000000 12222 345
Q ss_pred hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361 (559)
Q Consensus 284 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l 361 (559)
+.....+.++..+..........-....+-..++.++-++ .+.+|..|+.++..+...++.. +...++..+-..
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~ 252 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKW 252 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHH
Confidence 5566666666666544332221111233567788888887 7889999999999998877753 222344555555
Q ss_pred hcC
Q 042204 362 LIH 364 (559)
Q Consensus 362 L~~ 364 (559)
+..
T Consensus 253 l~~ 255 (339)
T PF12074_consen 253 LSS 255 (339)
T ss_pred HHh
Confidence 543
No 309
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=76.47 E-value=18 Score=36.18 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcC
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED------YPQLQYEAAWALTNIASK 173 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~------~~~~~~~a~~~L~nl~~~ 173 (559)
-+.++.+.+.+++...+..|+..|+. ++.++. ++|.|+.++...- +-......++.+..|..
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~- 246 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD- 246 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-
Confidence 46677777777777777777766655 333333 6899998886531 14455556666666766
Q ss_pred CchhHHHHHhCCCHHHHHHhhCC----------CCHHHHHHHHHHHHHHhC
Q 042204 174 TSEDTKVVIDHGAVPIFVKLLAS----------PNDDIREQAVWALGNVAG 214 (559)
Q Consensus 174 ~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~ 214 (559)
++...-...=+.++|.++.++-+ .+..+|+.|+..|+.++.
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 55554443334578888877632 345889999999999983
No 310
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=76.37 E-value=25 Score=27.80 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=52.6
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHH
Q 042204 140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWA 208 (559)
Q Consensus 140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~ 208 (559)
...++..|++.++.+. +..+.+++..|..++. ++.....+.+-|++..|.++=..-++..+...-..
T Consensus 28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567888888888888 5689999999999998 78888889999999997777666666665544433
No 311
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.46 E-value=2.1e+02 Score=35.14 Aligned_cols=216 Identities=17% Similarity=0.073 Sum_probs=111.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRD 221 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~ 221 (559)
....++..|..++ |..+..++.+++.++..-++.. ++ ++..+.+++-+.+ .++..|..-.-+++.+-.+.-..-.
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3445556666677 8899999999998887322211 11 2344556666665 4555555555566665432211110
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC---HhHHHH----------
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND---KEVLTD---------- 288 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~---------- 288 (559)
.-.....+..++.+..++.++.++..++.+++.+...........+...+..+..++-+.. .++...
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 0011223556666665566678999888888887765522223444555555555553321 111111
Q ss_pred ---HHHHHHHhccCChh-HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 042204 289 ---ACWALYFLSNGKND-KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364 (559)
Q Consensus 289 ---a~~~L~~l~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~ 364 (559)
...+++.=...+.. .....+....+-...-++.++++-++..+..++.++-...+.+.. -.-++..|..+|.+
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 11112111111111 011222222344445556777888999999999888765553221 11234555555555
Q ss_pred C
Q 042204 365 S 365 (559)
Q Consensus 365 ~ 365 (559)
.
T Consensus 1110 ~ 1110 (2067)
T KOG1822|consen 1110 S 1110 (2067)
T ss_pred h
Confidence 4
No 312
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=74.94 E-value=71 Score=33.23 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=65.4
Q ss_pred CHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC---CCCChHHH--HHHHHHHHHHHHhh
Q 042204 397 LIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL---PCANPTIV--TVCLKGLENILKVG 470 (559)
Q Consensus 397 ~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL---~~~d~~v~--~~~l~~l~~il~~~ 470 (559)
+|..|++-++.+ +..+|..++.+|..+..... ....-....++..||.++ ...-|.+- ...-+.+..+-+..
T Consensus 313 iIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~ 390 (441)
T PF12054_consen 313 IIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEE 390 (441)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhc
Confidence 566777777655 78899999999988875321 000001123567777777 22223322 12222333322221
Q ss_pred hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 042204 471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518 (559)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il 518 (559)
...+...............|.+-|+...|+.|..+-.+++.++.-.+.
T Consensus 391 ~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 391 DKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred ccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 111111000112233445688899999999998887777777654443
No 313
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=74.91 E-value=77 Score=29.97 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCCHHHHHHhhCCCCHH--------HHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHHHHH
Q 042204 184 HGAVPIFVKLLASPNDD--------IREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWTLSN 254 (559)
Q Consensus 184 ~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~L~n 254 (559)
..+++.++++++.++.. +-+....+|..++ .|-+.+|..++.+.. +.-++..++.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45789999999765432 2222223333332 345667777774433 55677789999999
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhccCCHh
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKE 284 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~ 284 (559)
+....+..+...+.-.-..+...+..++..
T Consensus 140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 998887666555544444444445444444
No 314
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=74.61 E-value=44 Score=34.94 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~ 172 (559)
-+.++.+.+.++++..+..|+..|+. ++-++. ++|.|+.++... .+-.+-....+.+..+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 56788888888999999988887765 333444 578999888753 224556666667777776
Q ss_pred CCchhHHHHHhCCCHHHHHHhhCC----------CCHHHHHHHHHHHHHHhCC
Q 042204 173 KTSEDTKVVIDHGAVPIFVKLLAS----------PNDDIREQAVWALGNVAGD 215 (559)
Q Consensus 173 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~ 215 (559)
++...-.-.=+..+|.++.++-+ .+..+|.-|+..+..|+.+
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~ 328 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKN 328 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHh
Confidence 66555444445677888876643 2345777777777776643
No 315
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.45 E-value=1.3 Score=25.28 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.7
Q ss_pred cCccchhhhcccccccc
Q 042204 10 LPSLERLLVDDCTNMKI 26 (559)
Q Consensus 10 ~~~l~~~~~~~c~~m~~ 26 (559)
+|.|+++.+++|++..-
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 58999999999998764
No 316
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.95 E-value=1.3e+02 Score=32.33 Aligned_cols=161 Identities=9% Similarity=0.049 Sum_probs=81.8
Q ss_pred ccCCHhHHHHHHHHHHHhccCChhHHHHHHH----hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--
Q 042204 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIE----AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC-- 352 (559)
Q Consensus 279 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~-- 352 (559)
..-..+.+..|+.+|+.+..+..... .+.. ..++..++..+. .++..+..++|+|.|+..+ +...+.+...
T Consensus 554 ~~wp~~~~fPalDilRl~v~h~~~~s-~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 554 LQWPVEMMFPALDILRLAVKHHSSNS-LFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLE 630 (745)
T ss_pred hcCCHHHhhhHHHHHHHHHhccchhh-hhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 34456777778888877775544221 2222 235566666665 5566788899999999987 3333323221
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-----ChhHHHHHHHHHHHHhcCC
Q 042204 353 GALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-----EINIKNWAAWAISNATSGG 427 (559)
Q Consensus 353 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-----~~~v~~~a~~aL~nl~~~~ 427 (559)
.++..+...-..+ +..++...+-...|.+. -.++.--+.+..+.|...+... |.+..-..+.||++++..+
T Consensus 631 ~i~~~~~~~~s~~-~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLS-NKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHhhhhhhhhccc-chhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 1122222222222 45666655555555542 1111111234455555544322 3344455667777777642
Q ss_pred CHHHHHHHHHcCChHHHHhcC
Q 042204 428 SHEQIKYLVREKCIKPLCDLL 448 (559)
Q Consensus 428 ~~~~~~~l~~~~~l~~L~~lL 448 (559)
.....+.+.--++.+..-+
T Consensus 707 --~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 707 --ASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred --HHHHHHHHhcCHHHHHHHH
Confidence 3344444433344444444
No 317
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=73.71 E-value=41 Score=32.75 Aligned_cols=125 Identities=12% Similarity=0.232 Sum_probs=88.5
Q ss_pred HHHhCCChHHHHHHhcCC------C----------------chhHHHHHHHHHHHhhcCCHHHHHH--------------
Q 042204 348 CIINCGALPYLLVLLIHS------H----------------KKSIKNHACWTISKITAGNREQIQA-------------- 391 (559)
Q Consensus 348 ~~~~~g~l~~L~~lL~~~------~----------------~~~v~~~a~~~L~nl~~~~~~~~~~-------------- 391 (559)
.+.+.|++|.|-++++.- . +..+|..-++.+.+++.+.......
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 456678888877776420 0 1236677778888887632111100
Q ss_pred ---H----HHcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCH-HHHHHHHHcCChHHHHhcCCCC---ChHHHHH
Q 042204 392 ---V----IDAGLIGPLINLLQNA--EINIKNWAAWAISNATSGGSH-EQIKYLVREKCIKPLCDLLPCA---NPTIVTV 458 (559)
Q Consensus 392 ---l----i~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l~~L~~lL~~~---d~~v~~~ 458 (559)
. -+.|++..+++.+..+ +...+-..+.|+-.+..++++ ....++.+.|+++.++..+-++ +..+.+.
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 0 1356788888888654 567788889999999999887 5677889999999999876443 3578999
Q ss_pred HHHHHHHHHHhhhh
Q 042204 459 CLKGLENILKVGEA 472 (559)
Q Consensus 459 ~l~~l~~il~~~~~ 472 (559)
+.+.|+.+++....
T Consensus 164 ~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 164 NFDLLGELIKFNRD 177 (303)
T ss_pred HHHHHHHHHCCCHH
Confidence 99999999987654
No 318
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.66 E-value=38 Score=37.83 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh---ccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKL---LSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS 175 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l---ls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~ 175 (559)
..+.+-...|.+++..+|.+++..|..- +... ....-.++ .-..|.+++.+..++ |-+...|..++.+++....
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~-~n~LlPlv-hq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY-HNLLLPLV-HQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc-chhHhHHH-HhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhh
Confidence 4667777888899999999999988753 3322 11122222 347899999999988 8999999999999988655
Q ss_pred hhHHHHHhCCCHHHHHHhhC
Q 042204 176 EDTKVVIDHGAVPIFVKLLA 195 (559)
Q Consensus 176 ~~~~~i~~~g~i~~L~~lL~ 195 (559)
+....=+-..++|.+-.++.
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 54433333456677665553
No 319
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.34 E-value=22 Score=30.22 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=57.1
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC-hH---HHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN-PT---IVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d-~~---v~~~~l~~l~~il~ 468 (559)
++..|.+-|.++++.++..|+..+-.+..++.+.....+....++..|..++.... .. |+..++..+...-.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 45567778888999999999999999999887788788778888999999886433 33 78888877766543
No 320
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=73.15 E-value=19 Score=29.33 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=51.5
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHH-----h-cCCCHHHHHH
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL-----Q-SHENNEIHEK 513 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L-----~-~~~~~~v~~~ 513 (559)
++..|..-|.+.++.++..+|..|..+++.+. .++...+.....+..+.++ . ...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g------------~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCG------------ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc------------HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 45566666778899999999999999997653 3355666666555555332 1 3458899999
Q ss_pred HHHHHHhhc
Q 042204 514 SVKILETYW 522 (559)
Q Consensus 514 a~~il~~~f 522 (559)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999998765
No 321
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=73.13 E-value=15 Score=33.63 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-----CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204 374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-----AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448 (559)
Q Consensus 374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 448 (559)
|...|.-+ +..|+....++++.+--.+...|.. ....+|..++..|+.+..++++..+..+....+++.+..+.
T Consensus 120 aL~lLQcl-aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 120 ALNLLQCL-ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHH-hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 33333333 4446666666676654344444432 23568899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHH-----HHHhcCCCHHHHHHHHH
Q 042204 449 PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKI-----ENLQSHENNEIHEKSVK 516 (559)
Q Consensus 449 ~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l-----~~L~~~~~~~v~~~a~~ 516 (559)
+..+.--...+..++..|+..+. +.+-.++.+++..++... +.+-......+-+.+.+
T Consensus 199 e~gSElSktvaifI~qkil~dDv----------GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR 261 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGDDV----------GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR 261 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhccch----------hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88777667777788888774432 445566767666555433 23334444555444333
No 322
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=73.09 E-value=63 Score=32.55 Aligned_cols=152 Identities=14% Similarity=0.030 Sum_probs=87.4
Q ss_pred HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc----------cCCHhHHHHHHHHHHHhccCCh
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH----------SNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
+...|.+......+..++.++.-|++++...........++.|+.+-. ..|..+...++.||+|+..++.
T Consensus 50 i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq 129 (532)
T KOG4464|consen 50 IFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQ 129 (532)
T ss_pred HHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccH
Confidence 344443333333444555566666666532222222333333333321 2356889999999999998888
Q ss_pred hHHHHHHHhCcHHHHHHhhCCCC-----CcchhhHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhcCCC---------
Q 042204 302 DKIQAVIEAGVCPRLVELLGHRS-----SSVLSPALQTIGHIVA-GDDFQTQCIINCGALPYLLVLLIHSH--------- 366 (559)
Q Consensus 302 ~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~-~~~~~~~~~~~~g~l~~L~~lL~~~~--------- 366 (559)
...+...+......+.+.+...- ..+...-++.|--+.. ..+...+.+.+.++++.+.++|.++-
T Consensus 130 ~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~ 209 (532)
T KOG4464|consen 130 RAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVP 209 (532)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCC
Confidence 77777777777666666654311 1122223333333322 23456667788899999999996431
Q ss_pred -----chhHHHHHHHHHHHhhc
Q 042204 367 -----KKSIKNHACWTISKITA 383 (559)
Q Consensus 367 -----~~~v~~~a~~~L~nl~~ 383 (559)
......+|..++.|++.
T Consensus 210 ~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 210 PLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCHHHHHHHHHHHHHHhheee
Confidence 12344567788888876
No 323
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=72.67 E-value=7.5 Score=33.15 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHH---HHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ---LQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~---~~~~a~~~L~nl~~ 172 (559)
.++..|.+.|+++++..++.|+..+..++.+-......++....++..|..++.+..... ++..++..|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 467888889999999999999999988877643455667777778889999887654333 78888877776655
No 324
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=71.55 E-value=27 Score=29.83 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=63.4
Q ss_pred cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchH
Q 042204 407 NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485 (559)
Q Consensus 407 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~ 485 (559)
.+|..+..+.|..|.. -.. .+.. ++..|..-|. +.++.++..++..|..+++.... .
T Consensus 16 ~~dw~~ileicD~In~-~~~-~~k~--------a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~------------~ 73 (141)
T cd03565 16 SEDWGLNMEICDIINE-TED-GPKD--------AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH------------R 73 (141)
T ss_pred CcCHHHHHHHHHHHhC-CCC-cHHH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH------------H
Confidence 4466666666666643 222 2222 3444555454 57899999999999998876432 3
Q ss_pred HHHHHHHhccHHH-HHHHhc---CCCHHHHHHHHHHHHhhcC
Q 042204 486 YAQLVEEAEGLEK-IENLQS---HENNEIHEKSVKILETYWC 523 (559)
Q Consensus 486 ~~~~i~~~g~l~~-l~~L~~---~~~~~v~~~a~~il~~~f~ 523 (559)
+...+..-++++. |.++.. +...+|+++...+|+.+-.
T Consensus 74 fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 74 FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 5666777788886 777754 2456899999999998754
No 325
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=70.45 E-value=1.2e+02 Score=34.08 Aligned_cols=143 Identities=19% Similarity=0.215 Sum_probs=88.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 181 (559)
..+...+.+++...-...+..+..+..-+.-++.. ...-++.-..-.+..- ..+......+|..++..+++....+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44555556666665555555666554433222221 1111111122222222 4677788899999999888887776
Q ss_pred Hh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 182 ID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 182 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
.. .++...++.++-+++.++.+.|...|..+.+.. .| .+.+-.++ +..-........+.|..+....
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GR--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cH--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 65 688999999999999999999999999987422 22 22333333 3333456667778888877654
No 326
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=69.34 E-value=92 Score=33.05 Aligned_cols=223 Identities=15% Similarity=0.025 Sum_probs=117.9
Q ss_pred cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC--C---------CCCcchhhHHHHHHHhhcCChHHHHH
Q 042204 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG--H---------RSSSVLSPALQTIGHIVAGDDFQTQC 348 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~---------~~~~v~~~al~~L~nl~~~~~~~~~~ 348 (559)
+++.+|...|-..|..+...- -+..++..|+.+.. . .++.++. ++|..++......
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~-------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~---kIL~~L~kS~~Aa--- 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSL-------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQE---KILSLLSKSVIAA--- 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHH---HHHHHHHHhHHHH---
Confidence 455667777777777766331 12235666666655 2 1223333 4444444321110
Q ss_pred HHhCCChHHHHHHhcCC-CchhHHHHHHHHH---HHhhc-CCHHHH---HHHHHcCCHHHHHH----HhhcCChhHHHHH
Q 042204 349 IINCGALPYLLVLLIHS-HKKSIKNHACWTI---SKITA-GNREQI---QAVIDAGLIGPLIN----LLQNAEINIKNWA 416 (559)
Q Consensus 349 ~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~-~~~~~~---~~li~~~~i~~Li~----lL~~~~~~v~~~a 416 (559)
-.-..++..+..-|.+. ....+|..+...+ ..... ..+..+ ...+..++.|.+-. --...+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01112233333333332 1345665555555 44433 233333 33444555555510 0123467899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204 417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL 496 (559)
Q Consensus 417 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l 496 (559)
..+|+.++... +.... -+-+++..|.+-|+.++++++..+-++|..++..-...... ........++
T Consensus 395 Ye~lG~L~~~~-p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-----~~~~~~~~~~----- 461 (501)
T PF13001_consen 395 YETLGLLAKRA-PSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-----EDEQKRLLLE----- 461 (501)
T ss_pred HHHHHHHHccC-ccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHH-----
Confidence 99999999874 22211 12456778888788889999999999999988553321100 0000111111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 042204 497 EKIENLQSHENNEIHEKSVKILETYWCGRVVG 528 (559)
Q Consensus 497 ~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~ 528 (559)
..+.....+....++-.|.+-.+.+|+.++.+
T Consensus 462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~ 493 (501)
T PF13001_consen 462 LLLLSYIQSEVRSCRYAAVKYANACFPFSDVP 493 (501)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence 12222234556678888899999999876644
No 327
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=67.20 E-value=36 Score=32.65 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhcccc---cccCcchHHHHHHHHhccHHHHHHHhcCCCH-HHHHHHHHHHHhhcCCCC
Q 042204 451 ANPTIVTVCLKGLENILKVGEAEKNMD---TAIGDVNQYAQLVEEAEGLEKIENLQSHENN-EIHEKSVKILETYWCGRV 526 (559)
Q Consensus 451 ~d~~v~~~~l~~l~~il~~~~~~~~~~---~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~-~v~~~a~~il~~~f~~~~ 526 (559)
.|..+++.++-.+.|++...+...... .....-+.+...+.+.|+++.|..+..+.+. +-......|+.-.|.+.+
T Consensus 132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 356789999999999998844321100 0001235677788899999999999887633 333355666666666554
No 328
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=67.19 E-value=1.3e+02 Score=29.53 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCC-----------CHHHHHHhhC------CCCHHHHHHHHHHHHHHhCCCchh
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHG-----------AVPIFVKLLA------SPNDDIREQAVWALGNVAGDSPRC 219 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~ 219 (559)
-++|..|+.|+.....++++.+..+++.- ....++..|- +.++.-.--|+.+|..+..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 68999999999999998998888776531 0111222222 122222223444444444444444
Q ss_pred hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-----cCCHhHHHHHHHHHH
Q 042204 220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-----SNDKEVLTDACWALY 294 (559)
Q Consensus 220 r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~ 294 (559)
|+.+.+- . .+. ...-+.....++.+..+|. ..|+.++.--+..|+
T Consensus 132 Ke~al~V--------------------------~---~~~-~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALRV--------------------------T---EGD-ESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT-------------------------------EE---STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHcc--------------------------c---CCC-CCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 3333221 0 000 0001111223344444332 446777777777776
Q ss_pred HhccCChhHHHHHHHhC-cHHHHHHhhCCC-CC--cchhhHHHHHHHhhc
Q 042204 295 FLSNGKNDKIQAVIEAG-VCPRLVELLGHR-SS--SVLSPALQTIGHIVA 340 (559)
Q Consensus 295 ~l~~~~~~~~~~~~~~g-~l~~L~~lL~~~-~~--~v~~~al~~L~nl~~ 340 (559)
.-...++..+..+++.+ .++.|++...+. +. -|+--++..||-+-.
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 66667777777777764 788888875442 22 244445555555444
No 329
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=66.75 E-value=1.5e+02 Score=30.01 Aligned_cols=155 Identities=11% Similarity=0.069 Sum_probs=86.1
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhc--C--------CCCHHHHHHHHHHHHHH
Q 042204 102 AAMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLM--R--------EDYPQLQYEAAWALTNI 170 (559)
Q Consensus 102 ~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~--~--------~~~~~~~~~a~~~L~nl 170 (559)
..+++.|..+. ...+...+..++- +|.+ ....+-+...-.++.|+.+-. . ++ ..+..+|+.||.|+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrI-LSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d-~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRI-LSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVAD-MHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHH-Hhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccc-hHHHHHHHHHHHHH
Confidence 45555565555 3444555555554 4554 222222222223444444432 1 12 47899999999999
Q ss_pred hcCCchhHHHHHhCCCHHHHHHhhCCC-----CHHHHHHHHHHHHHHhCCCchhhh-hhhccCCHHHHHHHhchh-----
Q 042204 171 ASKTSEDTKVVIDHGAVPIFVKLLASP-----NDDIREQAVWALGNVAGDSPRCRD-LVLSEEALIPLLAQLNEH----- 239 (559)
Q Consensus 171 ~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~r~-~i~~~g~l~~Ll~ll~~~----- 239 (559)
...++..++...+...+..+++.+... ...+...=+..|.-+..-.+..|. .+.+.++++.+.+.+...
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 999999999999988888888766431 111222222233333322233443 445667777777776311
Q ss_pred ---------hhHhHHHHHHHHHHHhhcCC
Q 042204 240 ---------AKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 240 ---------~~~~~~~~a~~~L~nL~~~~ 259 (559)
.+......++.++.|+....
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 22334455667777777655
No 330
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=66.05 E-value=6.4 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhcCCHH
Q 042204 370 IKNHACWTISKITAGNRE 387 (559)
Q Consensus 370 v~~~a~~~L~nl~~~~~~ 387 (559)
||..|+|+|+++ +++.
T Consensus 1 VR~~Aa~aLg~i--gd~~ 16 (27)
T PF03130_consen 1 VRRAAARALGQI--GDPR 16 (27)
T ss_dssp HHHHHHHHHGGG---SHH
T ss_pred CHHHHHHHHHHc--CCHH
Confidence 688999999998 4455
No 331
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=1.1e+02 Score=32.90 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCC------CchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIER------SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~------~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
+.++-+|+.++.+|++++..|+..++....... +.|.+.+.. -.+.|.++..+=..+..+...+.+|.-++.
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 467899999999999999999999998754321 222343332 122333333322225788889999999988
Q ss_pred CCchhH
Q 042204 173 KTSEDT 178 (559)
Q Consensus 173 ~~~~~~ 178 (559)
..++..
T Consensus 126 t~se~~ 131 (878)
T KOG2005|consen 126 TMSERG 131 (878)
T ss_pred eecccc
Confidence 544443
No 332
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.94 E-value=8.2 Score=30.92 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHH
Q 042204 160 QYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203 (559)
Q Consensus 160 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~ 203 (559)
-.+.+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3556777888888 789999999999999999999999887754
No 333
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=63.78 E-value=56 Score=34.26 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCC------------CHHHHHHHHHcCChHHHHhcC-CCCC
Q 042204 387 EQIQAVIDAGLIGPLINLLQN-AEINIKNWAAWAISNATSGG------------SHEQIKYLVREKCIKPLCDLL-PCAN 452 (559)
Q Consensus 387 ~~~~~li~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~l~~L~~lL-~~~d 452 (559)
..++-+.+.++++.|+++|.. .+.+++..|+..|+.++... ..+..+.|.....+..|++.. ....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 334445578999999999973 47789999998888776422 235567777778888777754 3233
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 042204 453 PTIVTVCLKGLENILKVG 470 (559)
Q Consensus 453 ~~v~~~~l~~l~~il~~~ 470 (559)
......++..+..++...
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 555666777777777544
No 334
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=63.69 E-value=1.7e+02 Score=29.60 Aligned_cols=235 Identities=14% Similarity=0.111 Sum_probs=107.8
Q ss_pred hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC-HhHHHHHHHHHHHhc
Q 042204 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND-KEVLTDACWALYFLS 297 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l~ 297 (559)
.....++..++..|+.++ ++.|+.-+...-.+|.++.............++-..+..++.... ..=....+.+|+.+.
T Consensus 169 vaK~yid~~FvlkLLdLF-dSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 169 VAKKYIDQKFVLKLLDLF-DSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHHHhhHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 344455666788888888 666666666555555555442211111111112222333332221 122344445555554
Q ss_pred cCCh--hHHHHHHHhCcHHHHHHhhCCCC-CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHH
Q 042204 298 NGKN--DKIQAVIEAGVCPRLVELLGHRS-SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHA 374 (559)
Q Consensus 298 ~~~~--~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a 374 (559)
.+-. -.-+..+ =.+..|+.+=+... .-.......++-.++..+...+..++. |.+..... -.+. .+| .-
T Consensus 248 ngfAlPlKEEhki--FL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIr-glLK~WP~-tnS~--KEV--mF 319 (457)
T KOG2085|consen 248 NGFALPLKEEHKL--FLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIR-GLLKYWPK-TNSS--KEV--MF 319 (457)
T ss_pred CcccCcchhHHHH--HHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHH-HHHHhcCC-CCCc--cee--ee
Confidence 3311 0000000 12344444433322 122334455666666666555554443 22111111 1111 111 01
Q ss_pred HHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC---ChHHHHhcCCC
Q 042204 375 CWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREK---CIKPLCDLLPC 450 (559)
Q Consensus 375 ~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~l~~L~~lL~~ 450 (559)
..-|..+.. -.+...+.+... ++..+-..+++.+..|.+.|+....| +++..|+..+ ++|.+-..|..
T Consensus 320 L~ElEEILe~iep~eFqk~~~P-Lf~qia~c~sS~HFQVAEraL~~wnN-------e~i~~Li~~n~~~ilPiiFpaLyr 391 (457)
T KOG2085|consen 320 LNELEEILEVIEPSEFQKIMVP-LFRQIARCVSSPHFQVAERALYLWNN-------EYIRSLISQNAEVILPIVFPALYR 391 (457)
T ss_pred HhhHHHHHHhcCHHHHHHHhHH-HHHHHHHHcCChhHHHHHHHHHHHhh-------HHHHHHHHhccceeeehhhHHHHH
Confidence 111222221 245555555443 56667777788899999988876654 4445555433 24444444422
Q ss_pred -----CChHHHHHHHHHHHHHHHhh
Q 042204 451 -----ANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 451 -----~d~~v~~~~l~~l~~il~~~ 470 (559)
=+..+...++.++..+++.+
T Consensus 392 ~sk~hWN~~i~~l~~nvlk~f~emd 416 (457)
T KOG2085|consen 392 NSKSHWNQAIHNLILNVLKTFMEMD 416 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 24566666777777777554
No 335
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=63.03 E-value=39 Score=28.92 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=53.3
Q ss_pred HHHHHhhccCCHhHHHHHHHHHHHhc-cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHH
Q 042204 272 PVLAQLVHSNDKEVLTDACWALYFLS-NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCII 350 (559)
Q Consensus 272 ~~L~~lL~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~ 350 (559)
..|+.+|+.+...-....+..|.+=. -+-++ ...+.++++..++.-=.....--+..|+..||.|..|-.
T Consensus 25 ~~lielLk~~~~~~~~~lldLL~~RV~PGVD~--AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 25 AELIELLKNPPAGEEAFLLDLLTNRVPPGVDE--AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHSS--TT-H--HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh--HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 34566666554444444555555543 22222 244555555555543222233345678888888776543
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 351 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
+..|+.+|.+. +..+...|+.+|++...
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67899999888 89999999999988765
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.90 E-value=49 Score=36.72 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=93.4
Q ss_pred chHHHHHhcCcHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhcCCchhHHHHHhC--------CCHHHHHHhhCC-
Q 042204 133 PPIEEVIQSGVVPRFVEFLMRED-------YPQLQYEAAWALTNIASKTSEDTKVVIDH--------GAVPIFVKLLAS- 196 (559)
Q Consensus 133 ~~~~~ii~~g~v~~Lv~lL~~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--------g~i~~L~~lL~~- 196 (559)
++.+.+...+.+..++++..-+- ..++...|+.+|.-+.. -|..+..++.+ .++..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 44666667777888888776421 13566667777777666 56666555432 134444433221
Q ss_pred ---CCHHHHHHHHHHHHHHhCCCchhhhhhhcc-----CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHh
Q 042204 197 ---PNDDIREQAVWALGNVAGDSPRCRDLVLSE-----EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR 268 (559)
Q Consensus 197 ---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-----g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 268 (559)
.+++++..|+.+|-|+....|.+|...+.. |--. ..+...+......+.+.-.++-.++ .
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r---~~l~~~~ks~~le~~l~~mw~~Vr~---------n 738 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR---IFLGAGTKSAKLEQVLRQMWEAVRG---------N 738 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc---ccccCCCchHHHHHHHHHHHHHHhc---------C
Confidence 489999999999999987777766433210 1000 0111222233344444444444444 4
Q ss_pred chHHHHHHhhccCC-----HhHHHHHHHHHHHhccCCh
Q 042204 269 PALPVLAQLVHSND-----KEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 269 ~~l~~L~~lL~~~d-----~~v~~~a~~~L~~l~~~~~ 301 (559)
.++..|+++|+... ..++.-||.+|.-|+..+.
T Consensus 739 dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 739 DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 57788888887543 5688999999999996554
No 337
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=62.18 E-value=21 Score=24.43 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=30.5
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 042204 487 AQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETY 521 (559)
Q Consensus 487 ~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~ 521 (559)
.+.+.+.|.-..+..|..| ++++|++.|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6678889988999999999 9999999999999875
No 338
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.00 E-value=2.4e+02 Score=36.92 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=28.0
Q ss_pred hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 266 QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 266 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
....++..++.-+.+++..|+..+..+|.+++...
T Consensus 1123 ~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s 1157 (3550)
T KOG0889|consen 1123 SAMNVFSPLVLELFNPNSDVREFSQKLLRLISELS 1157 (3550)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc
Confidence 34667777777788888899999999999988554
No 339
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=61.23 E-value=37 Score=25.28 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=30.3
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 487 AQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 487 ~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
.+.+.+...-..+..|-.|+|++|...|..++..+
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 66677777778899999999999999999999865
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=61.05 E-value=49 Score=26.86 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhh-----cCCCCHHHHHHHHHHHHHHh
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFL-----MREDYPQLQYEAAWALTNIA 171 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL-----~~~~~~~~~~~a~~~L~nl~ 171 (559)
..+..+.+.|.+.++..++.|+..|..++.....+...++....++..++++. .......+|..+...+...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46778888889999999999999999988776556666776766666665531 11123688888887776554
No 341
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.53 E-value=19 Score=27.70 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHH
Q 042204 225 SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWAL 293 (559)
Q Consensus 225 ~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 293 (559)
...++.|+..++....+.+++...+.++.++..............++..+.....++++.+...|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 344678888888777788999999999999987652211111233333333334455666776666554
No 342
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=59.04 E-value=16 Score=21.33 Aligned_cols=18 Identities=17% Similarity=0.602 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhcCCHHH
Q 042204 369 SIKNHACWTISKITAGNREQ 388 (559)
Q Consensus 369 ~v~~~a~~~L~nl~~~~~~~ 388 (559)
.+|.+|+++|+++ ++++.
T Consensus 2 ~vR~~aa~aLg~~--~~~~a 19 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEA 19 (30)
T ss_pred HHHHHHHHHHHHc--CCHhH
Confidence 4799999999998 44553
No 343
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.72 E-value=1.1e+02 Score=25.71 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 283 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
.++...++.++......-+ ...+.+.++++.+.++|. ++..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 7788889999888776433 356777789999999994 445577887765
No 344
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.40 E-value=3.2e+02 Score=30.92 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=86.2
Q ss_pred hchHHHHHHhhcc-CCHhHHHHHHHHHHHhccC------ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 268 RPALPVLAQLVHS-NDKEVLTDACWALYFLSNG------KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 268 ~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~------~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
...++.++.++.. .++.++..|-..|+.++.. ++.....+...+.+..|+..+-.+.. -....+..+.-+.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~-s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGT-SLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCc-chhhHHHHHHHHHH
Confidence 6788999999863 4688888888888877754 33455566666777777766554221 11222222222222
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCC---chhHHHHHHHHHHHhhcCCHHHHHHHHHcC---CHHHHHHHhhcCChhHHH
Q 042204 341 GDDFQTQCIINCGALPYLLVLLIHSH---KKSIKNHACWTISKITAGNREQIQAVIDAG---LIGPLINLLQNAEINIKN 414 (559)
Q Consensus 341 ~~~~~~~~~~~~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~li~~~---~i~~Li~lL~~~~~~v~~ 414 (559)
-.......+ . + . ....++.++. ++.+....+.++..- -.+..+.+.+.. .++.=...+..+=...|.
T Consensus 268 ll~~~r~~~-~-~-~-~~~~i~~q~~~~~d~~~~~~~l~~~~p~---L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 268 LLNPRRDTV-E-T-N-STTTILSQPPSERDPIVLNELLGAMEPR---LGDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred hcCcccccc-c-c-c-ceeeeecCCccccCccchHHHHHHHHHH---HHHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 111111000 0 0 0 0011221110 333343333333211 112222222111 111112222222235677
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 042204 415 WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC 450 (559)
Q Consensus 415 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~ 450 (559)
..+..+..+....+......+...++++.+.+++..
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 778888888777777777777777777777776644
No 345
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=58.07 E-value=1.6e+02 Score=32.55 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=64.7
Q ss_pred cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 042204 312 VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA 391 (559)
Q Consensus 312 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 391 (559)
++..|-..+.. +..|..++..|+.++...+.....+.+..+++.|+..|..+.+..+-..|+.+|..+.-.-+.....
T Consensus 71 ~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 71 LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 45556666654 4578899999999999888888889999999999999987757777788888888776543333322
Q ss_pred HHHcCCHHHHHHHh
Q 042204 392 VIDAGLIGPLINLL 405 (559)
Q Consensus 392 li~~~~i~~Li~lL 405 (559)
.+. .++.....++
T Consensus 149 ~L~-~Lf~If~Rl~ 161 (668)
T PF04388_consen 149 HLP-DLFNIFGRLL 161 (668)
T ss_pred HHH-HHHHHHHHHH
Confidence 222 1444444444
No 346
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=57.64 E-value=1.4e+02 Score=34.89 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322 (559)
Q Consensus 243 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~ 322 (559)
.+++.++|+|..+...- ........+..+..++..+..+++.-.+..+.|......+....+. .-+++..++-|.+
T Consensus 144 pVre~caq~L~~~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~d 219 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLED 219 (1549)
T ss_pred hhHHHHHHHHHHHHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence 57788888888887753 2233455666677777777777776666666655432111111111 1356777788888
Q ss_pred CCCcchhhHHHHHHHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH-----H
Q 042204 323 RSSSVLSPALQTIGHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI-----D 394 (559)
Q Consensus 323 ~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li-----~ 394 (559)
.+..++..|...+.-++..-.. +.-..+-+.....+..+..-. .. .......+..++... ....+. +
T Consensus 220 s~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~-~s--~~si~~ll~~l~~~~--evl~l~~~~n~~ 294 (1549)
T KOG0392|consen 220 SDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLS-SS--TASIMHLLDELCIEN--EVLDLFEQQNLE 294 (1549)
T ss_pred cchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcc-hh--hHHHHHHHHHHhhhH--HHHHHHHHhhhh
Confidence 8888998888887766653321 111111112222333332211 10 001111122222221 122221 3
Q ss_pred cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 395 AGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 395 ~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
.|++|.+...+.+.=..++..++..+..+.+..
T Consensus 295 ~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 295 VGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888888888877778888888887777643
No 347
>PLN03205 ATR interacting protein; Provisional
Probab=57.49 E-value=2.2e+02 Score=28.74 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=93.5
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhcc---CChhHHHHHHHhCcHHHH---HHh-hCCCCCcchhhHHHHHHHhhc
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSN---GKNDKIQAVIEAGVCPRL---VEL-LGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L---~~l-L~~~~~~v~~~al~~L~nl~~ 340 (559)
+.++..|+.+..-++.-+...+++.|..+.. ++..+.+.-.+.+++..+ .+. ..+.+..|+..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 4456666677666777777777776655442 233344444444443322 222 234667789999988877776
Q ss_pred CChH--HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH---------------------Hc--
Q 042204 341 GDDF--QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI---------------------DA-- 395 (559)
Q Consensus 341 ~~~~--~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li---------------------~~-- 395 (559)
.++. ..+.+....+++.+.++|+...-..||++|...+.-+.. .+.....+- ..
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 5544 334455556788888899765467789998766543321 111111110 00
Q ss_pred -CCHHHHHHHhhc-----CChhHHHHHHHHHHHHhcCCC
Q 042204 396 -GLIGPLINLLQN-----AEINIKNWAAWAISNATSGGS 428 (559)
Q Consensus 396 -~~i~~Li~lL~~-----~~~~v~~~a~~aL~nl~~~~~ 428 (559)
.++.-|-+.+.. .+.++++.++..|..++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 134445555543 366888889888888887653
No 348
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=55.64 E-value=2.3e+02 Score=28.54 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh
Q 042204 199 DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV 278 (559)
Q Consensus 199 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL 278 (559)
..-++.|...+.+.-.+-|...+. ++..-+.+. .+.+..+++.|+.-|-.+|.+. ....+.+.|+++|
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQLL 105 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHHH
Confidence 344556677777776666654333 455566666 6677888888888888888873 2223334444444
Q ss_pred c------------cCCHhHHHHHHHHHHH-hccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 279 H------------SNDKEVLTDACWALYF-LSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 279 ~------------~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
+ ..|..+++.++.-|.. +..-.++....-++.-++..+...|.+-...--...+..|+++..
T Consensus 106 nk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 106 NKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 3 2355566555555433 222333333333333344444444444333333344455555543
No 349
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=55.49 E-value=3e+02 Score=29.82 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHH---hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVI---DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL 233 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll 233 (559)
++.++-|+.+|.-+..+.+-....+- .+..+..++..+. .++..+-.++++|.|+..+ +..+..+... +..++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 58888899888888774333322221 2345556666655 5566777899999999877 5556665443 33333
Q ss_pred HHhc---hhhhHhHHHHHHHHHHHhhc--CCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHH
Q 042204 234 AQLN---EHAKLSMLRTATWTLSNFCR--GMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAV 307 (559)
Q Consensus 234 ~ll~---~~~~~~~~~~a~~~L~nL~~--~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 307 (559)
..+. ..++..+.........|++- ............+...+..++. .+|-+.....+.||++|+..+....+ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3332 11223333332222222221 1111111111222222222222 23444566677888888866654433 3
Q ss_pred HHhCcHHHHHHhhCC
Q 042204 308 IEAGVCPRLVELLGH 322 (559)
Q Consensus 308 ~~~g~l~~L~~lL~~ 322 (559)
...--+..++..++.
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 333334555555543
No 350
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.76 E-value=1e+02 Score=31.02 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=78.6
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 042204 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKY 434 (559)
Q Consensus 355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 434 (559)
+..|+..+.|. +..+|++|...|-.+....++..+.-.. .+++.+..+..+.+..+|.....++-.+.....++....
T Consensus 60 lkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~~-~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHLY-ALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHHH-HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 66788888898 9999999999988886654554443222 267778888888889999999888888776554554222
Q ss_pred HHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 435 LVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 435 l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
++. =+.+.+...+.+-.++++.-++..+..++...
T Consensus 138 ~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 211 12444555556777888888888777777553
No 351
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.65 E-value=1.5e+02 Score=25.97 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhccCC-----CC---chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH-hC
Q 042204 114 NLQLEATTKFRKLLSIE-----RS---PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI-DH 184 (559)
Q Consensus 114 ~~~~~a~~~l~~lls~~-----~~---~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~ 184 (559)
..+.-++..+..++... +. +....+++..+.+.+.+.+.+++ +.+-..+++++..+... .+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34444555555544332 12 25566677788999999998888 89999999999999863 232222 22
Q ss_pred C-CHHHHHH-hhCCCC--HHHHHHHHHHHHHHhCCCchhhhhh
Q 042204 185 G-AVPIFVK-LLASPN--DDIREQAVWALGNVAGDSPRCRDLV 223 (559)
Q Consensus 185 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i 223 (559)
+ .++.++. ++.+++ ..-|+.++.++..++.+..-..+..
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf 155 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLF 155 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 2 2344444 565543 4678889999999987654444433
No 352
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.27 E-value=3.4e+02 Score=30.03 Aligned_cols=73 Identities=22% Similarity=0.178 Sum_probs=58.8
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 345 (559)
...+.+|..+....=+.++..++.++..+..+.+++-+ .++..++.-|.+++..+...|-..|.+|.+..+..
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 45566666666666789999999999999988887644 35678899999999999999999999998766643
No 353
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=53.96 E-value=84 Score=25.33 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=54.3
Q ss_pred CChHHHHHHhcCCC---chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCC
Q 042204 353 GALPYLLVLLIHSH---KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIKNWAAWAISNATSGG 427 (559)
Q Consensus 353 g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~ 427 (559)
|++..+...+.+.. +..-|+.+..++..+.......+.. +.|++...|++. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~-----a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS-----ALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 66777777776652 3355888999888887522222222 466677777653 6789999999988888776
Q ss_pred CHHHHHHHHH
Q 042204 428 SHEQIKYLVR 437 (559)
Q Consensus 428 ~~~~~~~l~~ 437 (559)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 354
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=53.86 E-value=1.4e+02 Score=25.43 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=56.3
Q ss_pred CHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHhcCCC---CChHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKP-LCDLLPC---ANPTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~d~~v~~~~l~~l~~il~ 468 (559)
.+..|.+-|. +.++.++..|+..|-.++.++.......+...+++.. |+.++.. .+..|...++..+.....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3445555565 3588899999999999999988888888888999987 9999863 234788888888877653
No 355
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.57 E-value=1e+02 Score=31.07 Aligned_cols=131 Identities=12% Similarity=0.137 Sum_probs=87.9
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHH
Q 042204 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQA 391 (559)
Q Consensus 313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~ 391 (559)
+..|+..++|.+..++..|+.-|-.+....+.....- -..+++.+..+..+. +..+|.....++-++... .++....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcc
Confidence 5678888999999999999999988887644332211 224567777777777 888999988888876542 2332222
Q ss_pred HHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204 392 VIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448 (559)
Q Consensus 392 li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 448 (559)
++. =+++.+...+.+-.+++|..+...+.-++....+....+... .++.+.+++
T Consensus 138 ~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 138 MVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred hHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 222 145556666667788999999999998888766665555433 444444443
No 356
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=53.36 E-value=34 Score=34.05 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=64.2
Q ss_pred CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHH
Q 042204 439 KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQS-HENNEIHEKSVKI 517 (559)
Q Consensus 439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~-~~~~~v~~~a~~i 517 (559)
.++..|..-|++.|+.|+..++..+..+..... ..++..+..-.+...+..|.. ...+.|.++...+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg------------~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCG------------KRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc------------hHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHH
Confidence 368888888999999999999999988775533 236667777778888888877 7889999998888
Q ss_pred HHhhcCCCCCCCCCCCC
Q 042204 518 LETYWCGRVVGPQPGPQ 534 (559)
Q Consensus 518 l~~~f~~~~~~~~~~~~ 534 (559)
+.+|-++--.|+++...
T Consensus 113 v~eWsee~K~Dp~lsLi 129 (462)
T KOG2199|consen 113 VKEWSEEFKKDPSLSLI 129 (462)
T ss_pred HHHHHHHhccCcchhHH
Confidence 88776533345555543
No 357
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=52.12 E-value=66 Score=23.97 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=30.6
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 487 AQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 487 ~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
.+.+.+.+.-..+..|-.|++++|+..|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56677888778899999999999999999999865
No 358
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=51.76 E-value=2.3e+02 Score=27.20 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 96 TRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 96 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
..++.+..|.+.|+..|+... ...+.+... .+++..++|.|+..=. + +.+...+++.|.+++.
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 446788899999988776655 444444432 2445567887766532 4 7999999999999987
No 359
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.16 E-value=3.8e+02 Score=29.68 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHH--HHHh-----------------------------cCcHH
Q 042204 97 RLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIE--EVIQ-----------------------------SGVVP 145 (559)
Q Consensus 97 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~--~ii~-----------------------------~g~v~ 145 (559)
.+..++.|+....+......++++.+|..++-+.--|.+. .+-+ ..+|.
T Consensus 228 ~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfie 307 (988)
T KOG2038|consen 228 NLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIE 307 (988)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHH
Confidence 3567778888777765556666666666554332111110 0000 12334
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204 146 RFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS 225 (559)
Q Consensus 146 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 225 (559)
.|..+-.++- +.++..|+..+..+....|++-.. ++..|+.-|.++...+...|...|.+|....|..+..+
T Consensus 308 vLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv-- 379 (988)
T KOG2038|consen 308 VLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV-- 379 (988)
T ss_pred HHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh--
Confidence 4444444444 789999999999999988887554 45678888888999999999999999988888866554
Q ss_pred cCCHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcC
Q 042204 226 EEALIPLLAQLN-EHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 226 ~g~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~ 258 (559)
+..+-+++. .+.+......++-+|..+.-.
T Consensus 380 ---i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 ---IDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred ---HHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 344444442 222333444455566655443
No 360
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=51.10 E-value=3.6e+02 Score=31.75 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=96.4
Q ss_pred HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh
Q 042204 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362 (559)
Q Consensus 283 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL 362 (559)
..|++.+.|+|..+..+-++. .+ ...+..+..++..+.+.++.-.+..+.....--......+. ..+++..+.-|
T Consensus 143 apVre~caq~L~~~l~~~~~s--~~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDES--LI--KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhH--hh--HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Confidence 467888999998887543321 11 13467777888888787777665555443331111111111 14567777778
Q ss_pred cCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHcCCHHHHHHHhhcCChhHHH---HHHHHHHHHhcCCCHHHHHHHH--
Q 042204 363 IHSHKKSIKNHACWTISKITAGNRE-QIQAVIDAGLIGPLINLLQNAEINIKN---WAAWAISNATSGGSHEQIKYLV-- 436 (559)
Q Consensus 363 ~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~~~i~~Li~lL~~~~~~v~~---~a~~aL~nl~~~~~~~~~~~l~-- 436 (559)
.+. +..++..|+.++.-+++.-.. ..+.+. .++..+...+..-+. +-. .....+..++.. .+......
T Consensus 218 ~ds-~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~--~evl~l~~~~ 291 (1549)
T KOG0392|consen 218 EDS-DDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDD-LSSSTASIMHLLDELCIE--NEVLDLFEQQ 291 (1549)
T ss_pred hhc-chHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhh--HHHHHHHHHh
Confidence 887 888999998888776543211 111111 134444444443322 111 111112222221 11111111
Q ss_pred --HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 437 --REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 437 --~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
+.|+++.+...+.+.=..++..+++.+..++....+
T Consensus 292 n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 292 NLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ 329 (1549)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 146677777777776677778888888888776543
No 361
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=51.04 E-value=95 Score=32.61 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=42.9
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc----hhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhC
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS----EDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAG 214 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~----~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~ 214 (559)
.++|+.+++-+.. +.+..--+++++ .+.+ .....+.+.+.|+.|+.+|. +.+.+++..|+.+|..|..
T Consensus 20 ~~~v~~llkHI~~---~~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 20 PNFVDNLLKHIDT---PAIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred ccHHHHHHHhcCC---cHHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3566666665543 344443333333 2222 33455567899999999997 4667888888888777754
No 362
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=50.73 E-value=1.5e+02 Score=31.48 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhc--C--------CCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLM--R--------EDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~--~--------~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
+.+.++.-.|-..|+++... +-+..+|..|..+.. . +-++.+|...+..|..-...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------ 313 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------ 313 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------
Confidence 33445555666666664322 123346667776655 2 22377887777666652110
Q ss_pred HHHhCCCHHHHHHhhCCC--CHHHHHHHHHHH---HHHhCCCchhhhhhhccCCHHHHHHHhc-------hhhhHhHHHH
Q 042204 180 VVIDHGAVPIFVKLLASP--NDDIREQAVWAL---GNVAGDSPRCRDLVLSEEALIPLLAQLN-------EHAKLSMLRT 247 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L---~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-------~~~~~~~~~~ 247 (559)
.-....++..+..-+.+. +..++..++..+ .....+.+...-..+.......+...+. ...+...+..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 001123334444455555 667777777766 5554443321111111111112222221 1245678888
Q ss_pred HHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
+-.+|..|++..|..- ...-..+..|..-|..++++++..+-.||+.++.
T Consensus 394 aYe~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9999999998875432 2224566667777778889999888888888773
No 363
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=50.31 E-value=72 Score=31.89 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=59.2
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~ 468 (559)
.+..+.+-|.+.|+.|...|+..+..+..++....+..+....+...|..+++ ...+.|....-..+....+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999888888888888889999999988 5667777766666655544
No 364
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=50.06 E-value=20 Score=28.83 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHH
Q 042204 415 WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457 (559)
Q Consensus 415 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~ 457 (559)
..+..+..++. .|+....+++.|+++.|+.||.+++.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 44556666666 578899999999999999999999888654
No 365
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=49.33 E-value=2.7e+02 Score=27.47 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=98.5
Q ss_pred chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH-h---cCCCchhHHH-HHHHHHHHhhc----CCHHHHHHHHHcCC
Q 042204 327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL-L---IHSHKKSIKN-HACWTISKITA----GNREQIQAVIDAGL 397 (559)
Q Consensus 327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l-L---~~~~~~~v~~-~a~~~L~nl~~----~~~~~~~~li~~~~ 397 (559)
++...++.+...+...+.. +. +....++.|+.. | +.. .|..|. ++...++.++. ...+.+..+++. +
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 4566677777666654432 22 333566776663 3 222 333332 23344444432 223344455544 6
Q ss_pred HHHHHHHhhcC---ChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 398 IGPLINLLQNA---EINIKNWAAWAISNATSGG-------SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 398 i~~Li~lL~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
+...+.++..+ -|+.+..-...|.++.... ++++... +++.++--+++.++++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 77777787654 3677777777777666542 2222222 3556666678999999999999999999
Q ss_pred HhhhhhcccccccCcchHHHHHHHHhccHHHHH----HHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 468 KVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIE----NLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~----~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
..-... ..++...+-+.-.++.+. -+.+.......+....++...|..
T Consensus 194 ~~~~~~---------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 194 NNVSKT---------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHH----------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHhc---------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 876651 112333333333333333 344555555556666777777753
No 366
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=48.81 E-value=81 Score=23.11 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204 247 TATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP 314 (559)
Q Consensus 247 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 314 (559)
..+|+++.|--. |.........+...+..-+..-++....+++|.++.+-..+.+.++.+.+...+.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 345666666533 4443444455666666666677899999999999999888888877777655544
No 367
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.34 E-value=4e+02 Score=29.09 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=146.8
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
..++.+.+.|. +.|+..+..|=..|+.+ +.. ++ .+...--+|..++.|--+..|+.+|.++.++....
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~-s~s-pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~l 73 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAEL-SES-PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL 73 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-ccC-HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC
Confidence 45677777776 67889999999999886 432 22 34444555666666788888999999988854311
Q ss_pred HHHHHhCCCHHHHHHhhCCCCH----HHHHHHHHHHHHHhCCCch--hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204 178 TKVVIDHGAVPIFVKLLASPND----DIREQAVWALGNVAGDSPR--CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT 251 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~----~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~ 251 (559)
.......+-..++++|....| -+....+..++.+....-- .++...-.+.+..+.+.+ +..+.+--..++..
T Consensus 74 -pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 74 -PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI 151 (1082)
T ss_pred -cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence 111112334566677766333 3344444455555432111 111111123455566666 33334444445566
Q ss_pred HHHhhcCCCCCcHhhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHH----hhC----
Q 042204 252 LSNFCRGMPRPIFEQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVE----LLG---- 321 (559)
Q Consensus 252 L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~----lL~---- 321 (559)
|+.|..+-..+.......--..+..-++++ =-+|..-+|..|.+...-+- +..+ .|++..+.+ .+.
T Consensus 152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q----~~L~~~vL~L~l~Cl~FDfi 227 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ----LGLLMQVLKLNLNCLNFDFI 227 (1082)
T ss_pred HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH----hhHHHHHHHHHhhhcccccc
Confidence 666654321110000000000111111111 13455666666666652211 1111 122222222 221
Q ss_pred -CC-CC------cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-----CHHH
Q 042204 322 -HR-SS------SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-----NREQ 388 (559)
Q Consensus 322 -~~-~~------~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~ 388 (559)
+. ++ .|+.+. ..+..+.+...+..+.++..+- .+..-+.|..+|..+++- +...
T Consensus 228 Gss~DEssed~ctVQIPT------------sWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~ae 294 (1082)
T KOG1410|consen 228 GSSTDESSEDLCTVQIPT------------SWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAE 294 (1082)
T ss_pred ccccccccccccceecCc------------HHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHH
Confidence 10 10 122222 2334456667788888898888 778888888888888751 2222
Q ss_pred HHHHHHcCCHHHHHHHhhcC----ChhHHHHHHHHHHHHh
Q 042204 389 IQAVIDAGLIGPLINLLQNA----EINIKNWAAWAISNAT 424 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~----~~~v~~~a~~aL~nl~ 424 (559)
++..+.+ +++-..+++.++ |+.--.+-|..|..+-
T Consensus 295 Ra~yl~~-Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 295 RAKYLQH-LVEGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHHHHHH-HHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 3333222 444455555543 4444444555555443
No 368
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=47.27 E-value=2.8e+02 Score=27.08 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=83.3
Q ss_pred HHHHHhCCCHHHHHHhhCC-----------------------CCHHHHHHHHHHHHHHhCCCchhh--------------
Q 042204 178 TKVVIDHGAVPIFVKLLAS-----------------------PNDDIREQAVWALGNVAGDSPRCR-------------- 220 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~-----------------------~~~~v~~~a~~~L~nl~~~~~~~r-------------- 220 (559)
...+.+.|+||.|-+++.. |+..++.+-++.+.++|.......
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3567788999999887753 122478889999999986332111
Q ss_pred -------hhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCC-CcH--hhHhchHHHHHHhhccC---CHhHH
Q 042204 221 -------DLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPR-PIF--EQVRPALPVLAQLVHSN---DKEVL 286 (559)
Q Consensus 221 -------~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~-~~~--~~~~~~l~~L~~lL~~~---d~~v~ 286 (559)
..--+.|.+..++..+... .+...+-..+.++-.+.++.+. ... ....|+++.++.-+-++ +.++.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 0112346677777777543 3455666788888888888744 333 33478888888766543 35688
Q ss_pred HHHHHHHHHhccCChhH
Q 042204 287 TDACWALYFLSNGKNDK 303 (559)
Q Consensus 287 ~~a~~~L~~l~~~~~~~ 303 (559)
......|+.|...+...
T Consensus 162 Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHHCCCHHH
Confidence 88888888888776544
No 369
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=45.88 E-value=98 Score=30.76 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=44.1
Q ss_pred CchHHHHHhcC--cHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCCchhHHHH------HhCCCHHHHHH
Q 042204 132 SPPIEEVIQSG--VVPRFVEFLMRED--YPQLQYEAAWALTNIASKTSEDTKVV------IDHGAVPIFVK 192 (559)
Q Consensus 132 ~~~~~~ii~~g--~v~~Lv~lL~~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i------~~~g~i~~L~~ 192 (559)
......+...+ ++..|++++..++ ...+|..|+.+|..|+.......+.+ +.+|+++.+++
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 45566666666 9999999998654 26899999999999999655554433 23566666665
No 370
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=44.83 E-value=45 Score=28.57 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
++...+++.|+.+........+..|.+-+.-. -+. ..-++++++..++.-=.... .--+..|...|+.+..|.
T Consensus 22 ~Qt~~lielLk~~~~~~~~~lldLL~~RV~PG-VD~-AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GGY---- 94 (154)
T PF11791_consen 22 EQTAELIELLKNPPAGEEAFLLDLLTNRVPPG-VDE-AAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGGY---- 94 (154)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHSS--T-T-H-HHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SST----
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhcCCCC-CCh-HHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCCC----
Confidence 35567888888655433333344444422211 111 12234445544443311111 234677788887777642
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAG 214 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 214 (559)
-|.+|+.+|.+.+.++...|+.+|.+..-
T Consensus 95 -------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 -------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred -------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 48999999999999999999999998653
No 371
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.41 E-value=1.3e+02 Score=31.50 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=58.3
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il 467 (559)
++..|.+.+.+.++.++..|+..|--++.++.......+.+.+++..++.+.+. .+..|+..++..|...-
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 456677778888889999999988888888887887888899999999998865 46788998988887643
No 372
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=43.47 E-value=1.3e+02 Score=29.78 Aligned_cols=78 Identities=27% Similarity=0.360 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCC--CHHHHHHhhCC---CCHHHHHHHHHHHHHHhCCCchhhhhhh------cc
Q 042204 158 QLQYEAAWALTNIASKTSEDTKVVIDHG--AVPIFVKLLAS---PNDDIREQAVWALGNVAGDSPRCRDLVL------SE 226 (559)
Q Consensus 158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~------~~ 226 (559)
.+|..|+-++..+.. .+.....+...+ ++..|++++.. -...++..|+.+|..|+.+.+.+.+.+. .+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 566777777766665 566677777776 89999999876 3578899999999999987766555443 34
Q ss_pred CCHHHHHHHh
Q 042204 227 EALIPLLAQL 236 (559)
Q Consensus 227 g~l~~Ll~ll 236 (559)
|++..+++.+
T Consensus 316 GiL~~llR~~ 325 (329)
T PF06012_consen 316 GILPQLLRKC 325 (329)
T ss_pred ccHHHHHHHH
Confidence 5555555443
No 373
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.76 E-value=82 Score=32.81 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=63.9
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcch
Q 042204 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVN 484 (559)
Q Consensus 405 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~ 484 (559)
|..+|+.+-.+.|..|-. ...+.++ ++..|-.-+.+.++.+...+|..|..+++....
T Consensus 14 l~~pDWa~NleIcD~IN~-~~~~~~e---------AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~------------ 71 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINS-TEGGPKE---------AVRALKKRLNSKNSKVQLLALTLLETCVKNCGY------------ 71 (470)
T ss_pred ccCccHHHHHHHHHHHhc-CccCcHH---------HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH------------
Confidence 344566666665555433 2222222 455666777888889889999988888866433
Q ss_pred HHHHHHHHhccHHHHHHHh-cC-CCHHHHHHHHHHHHhh
Q 042204 485 QYAQLVEEAEGLEKIENLQ-SH-ENNEIHEKSVKILETY 521 (559)
Q Consensus 485 ~~~~~i~~~g~l~~l~~L~-~~-~~~~v~~~a~~il~~~ 521 (559)
.|...+.+.++++....+- ++ .+..|+++++.+|+.|
T Consensus 72 ~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 72 SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 3566777777777766664 45 6788999999999876
No 374
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.16 E-value=67 Score=36.06 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=67.6
Q ss_pred hHhchHHHHHHhhccCCHhHHHHHHHHHHHhc----cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204 266 QVRPALPVLAQLVHSNDKEVLTDACWALYFLS----NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 266 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~----~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 341 (559)
++..++..-.++|.+.+..++..++.++.... ...+.... ++. -.-+.+++.+...++-+...|+.+|.+++..
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34566667778888999999999999987644 33333332 222 3568899999999999999999999999987
Q ss_pred ChHHHHHHHhCCChHHHHHHhcC
Q 042204 342 DDFQTQCIINCGALPYLLVLLIH 364 (559)
Q Consensus 342 ~~~~~~~~~~~g~l~~L~~lL~~ 364 (559)
.......=+-..++|.+-.+++.
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 66533322222566666665543
No 375
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=41.88 E-value=49 Score=27.42 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC---CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcc
Q 042204 407 NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL---PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDV 483 (559)
Q Consensus 407 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL---~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~ 483 (559)
+++...-...+.-|+..+... ..... ++..|..-| ..++..++..+|..|..++..|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~----------- 75 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE----------- 75 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H-----------
T ss_pred CCCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH-----------
Confidence 333344555566677777642 33333 344555555 566788999999999999987644
Q ss_pred hHHHHHHH-HhccHHHHHHHhc-C-----CCHHHHHHHHHHHHhhcC
Q 042204 484 NQYAQLVE-EAEGLEKIENLQS-H-----ENNEIHEKSVKILETYWC 523 (559)
Q Consensus 484 ~~~~~~i~-~~g~l~~l~~L~~-~-----~~~~v~~~a~~il~~~f~ 523 (559)
.+...+. ....+..+...+. + ....|+++|..+++-.++
T Consensus 76 -~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 76 -RFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp -HHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 2344442 2223333333322 1 124599999999986654
No 376
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=41.72 E-value=1.9e+02 Score=24.88 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=77.4
Q ss_pred CchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhC--CCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHH
Q 042204 174 TSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAG--DSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATW 250 (559)
Q Consensus 174 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~--~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~ 250 (559)
+++.-+.+.+.+.+..++++++. ....++.+.+..++-+.. .++..-..+.+.+.+..++..-.+-.+.++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 34456777888899999999887 667777777777766652 222233456777888887776545557778777777
Q ss_pred HHHHhhcCCCCCcHh--h-----HhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204 251 TLSNFCRGMPRPIFE--Q-----VRPALPVLAQLVHSNDKEVLTDACWALYFL 296 (559)
Q Consensus 251 ~L~nL~~~~~~~~~~--~-----~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 296 (559)
.|..++..-...... . .-++...-+++..++|.-++..+-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 777776433111110 0 123333445566788887777776665554
No 377
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.18 E-value=3.8e+02 Score=26.80 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=62.3
Q ss_pred HHHHHHHhchh-----h-hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc----------cCCHhHHHHHHHH
Q 042204 229 LIPLLAQLNEH-----A-KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH----------SNDKEVLTDACWA 292 (559)
Q Consensus 229 l~~Ll~ll~~~-----~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~ 292 (559)
++.++..+... . +.......+.++..|..+..-........++|.++.++- .++..++..|...
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 45555555321 1 466677777888888887644444555678888887662 1335788999999
Q ss_pred HHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCc--chhhHHHHHHHh
Q 042204 293 LYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSS--VLSPALQTIGHI 338 (559)
Q Consensus 293 L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~--v~~~al~~L~nl 338 (559)
+..++..-..... -+...++..+.+.+.++... ...-|+..|..+
T Consensus 292 l~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 292 LAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9988844332211 12233444555555544322 244455555544
No 378
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.59 E-value=37 Score=33.38 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCchhHHHHHhCCCHHHHHHh--hCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKL--LASPNDDIREQAVWALGNVAGDSPRCRDLVLS 225 (559)
Q Consensus 163 a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l--L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 225 (559)
..+.+++++...++..+.+.+-|+++.++.- ..+.+|-+++-.+.|+.++..++.+.++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5678999999999999999999999988874 45678999999999999999988887776653
No 379
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=39.77 E-value=2.9e+02 Score=25.03 Aligned_cols=141 Identities=20% Similarity=0.187 Sum_probs=84.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHHHHhCCCchhhhh
Q 042204 145 PRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQA-VWALGNVAGDSPRCRDL 222 (559)
Q Consensus 145 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~r~~ 222 (559)
..+..+..++. -+.+..|+.++......... ..++.+-.++.. .+-.+.+.. ..+++.+....+
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~----- 119 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP----- 119 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG-----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH-----
Confidence 34455666666 78888888887654431111 134555566654 566666655 445555532111
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 302 (559)
...+.+...+ .+.++-.++.++-++...... ......+..+...+.+++..|+..+.|+|..++..+++
T Consensus 120 ----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 120 ----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 1233333444 666777777776555444433 23345566666777888999999999999999988887
Q ss_pred HHHHHHHh
Q 042204 303 KIQAVIEA 310 (559)
Q Consensus 303 ~~~~~~~~ 310 (559)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666655
No 380
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=39.68 E-value=2.1e+02 Score=23.37 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=44.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh-hCCCCHHH-HHHHHHHHHHHhCC
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL-LASPNDDI-REQAVWALGNVAGD 215 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v-~~~a~~~L~nl~~~ 215 (559)
++|.+.+.|.....++.+..+..+++.++...+ -.+. ++..+++. +.+....- ..+++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 578889999944448999999999999998433 2222 33344432 23322222 47789999998844
No 381
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=39.15 E-value=2e+02 Score=23.04 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=55.1
Q ss_pred CChHHHHHHhcC---CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCC
Q 042204 353 GALPYLLVLLIH---SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIKNWAAWAISNATSGG 427 (559)
Q Consensus 353 g~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~ 427 (559)
|++..+...+.+ ..+...|+.+..++..+..-....+.. +.|++...|+.. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 666777777766 336678899999998887633333332 466677777643 4589999999888888776
Q ss_pred CHHHHHHHHH
Q 042204 428 SHEQIKYLVR 437 (559)
Q Consensus 428 ~~~~~~~l~~ 437 (559)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7666666554
No 382
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.84 E-value=6.7e+02 Score=30.17 Aligned_cols=196 Identities=14% Similarity=0.203 Sum_probs=102.7
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHH----HHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPY----LLVLLIHSHKKSIKNHACWTISKITAGNREQ 388 (559)
Q Consensus 313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~----L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 388 (559)
+..+++-|...++..+..|+.-++.+....+. .... |+++. +.+++.+. +..||...--+++.+...-...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~--e~~~--~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDT--EELK--GILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccc--hHHh--hhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888999999999999875442 2222 23333 33444556 8999999998898887643333
Q ss_pred HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC-------------------C
Q 042204 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL-------------------P 449 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-------------------~ 449 (559)
+...++. +++...-.--+.+..+-..|...+..........++-.+.+..+...+.+.+ +
T Consensus 118 lsp~LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E 196 (1312)
T KOG0803|consen 118 LSPFLKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELE 196 (1312)
T ss_pred hhHHHHh-hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHH
Confidence 3333322 3333332223335556666666665554421111111122222222222221 1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 450 ~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
...+++...++.++..+++......+. +.....+...-.-+++-++..|.++.|.....+++-.+
T Consensus 197 ~k~~Rvi~ssLl~l~~l~~~~~~~~el-------~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 197 SKYQRVISSSLLLLLKLFKITGDEEEL-------HSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCchHhh-------hhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 122456667777777777442221111 00001111112246777888888888877766665443
No 383
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=38.79 E-value=3.5e+02 Score=28.20 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH
Q 042204 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK 192 (559)
Q Consensus 113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~ 192 (559)
...+..|+.+|..+++.-..+....+.+ +.|+..|++.. ..-|..|+-++...+...........-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3567889999999887643444444332 26888999888 677888888888888743322111101123456666
Q ss_pred hhCC
Q 042204 193 LLAS 196 (559)
Q Consensus 193 lL~~ 196 (559)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7764
No 384
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=38.76 E-value=2.5e+02 Score=23.95 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=46.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH
Q 042204 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF 264 (559)
Q Consensus 185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 264 (559)
..-..+..+|.++++++|..|+.||...-. +. +.. .-+.|-+++ +....+..+..+. +..+......
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~----l~p--Y~d~L~~Ll----dd~~frdeL~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD--PY----LTP--YKDNLENLL----DDKTFRDELTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HH----HHh--HHHHHHHHc----CcchHHHHHHhhc-ccCCcCCCCH
Confidence 344667889999999999999999988521 11 111 113344444 2222332222222 2222223444
Q ss_pred hhHhchHHHHHHhhc
Q 042204 265 EQVRPALPVLAQLVH 279 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~ 279 (559)
.....++|.++.+|.
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 556788898888873
No 385
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=36.08 E-value=2.1e+02 Score=25.08 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=51.5
Q ss_pred cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204 226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 226 ~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 299 (559)
.+.+...+..+..-.|..+...++.++.+..... .-.......++|.+..+|.+..+.-..-++..|.-+...
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3445555555555567777777777766554432 344555678899999999999999999999888877743
No 386
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.03 E-value=1.2e+02 Score=23.15 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=42.6
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh----cCChhHHHHHHHHH
Q 042204 351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ----NAEINIKNWAAWAI 420 (559)
Q Consensus 351 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~----~~~~~v~~~a~~aL 420 (559)
+..++.++..++.+..+.++|.....++.++.....+.+ .. +.+.++.++. +++..+...|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 335677888887655588999999999999976433333 33 4555555553 34566666665554
No 387
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.72 E-value=2.1e+02 Score=29.91 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=63.9
Q ss_pred CChHHHHHHhcCCC---chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCH
Q 042204 353 GALPYLLVLLIHSH---KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSH 429 (559)
Q Consensus 353 g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~ 429 (559)
.+...|..+|.... ++.+|...+.+|.-+--.+ .+.-..++..++.++..++...|+-+..-|.....+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 45566777775431 5778888777776653211 111123566788888888887776665544444332211
Q ss_pred HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 430 EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 430 ~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
.....-....+-..+.++|+.+|+.-...++..+..+-+...
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~i 132 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNI 132 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcc
Confidence 111111112233466788888888766666666666554443
No 388
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.37 E-value=57 Score=31.81 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=44.9
Q ss_pred HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc--------------hhHHHHHhCCCHHHHHHhhCC
Q 042204 137 EVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS--------------EDTKVVIDHGAVPIFVKLLAS 196 (559)
Q Consensus 137 ~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--------------~~~~~i~~~g~i~~L~~lL~~ 196 (559)
...+...+..+++-|.+.+ ...|..|+++|..++.|.- .+...+.+.|+++.|..+|..
T Consensus 55 ~~~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhhHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344567888999999888 8999999999999999842 223456677888888887753
No 389
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=35.26 E-value=42 Score=28.81 Aligned_cols=125 Identities=10% Similarity=0.103 Sum_probs=82.0
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHcCCHHHHHHHh-hcCChhHHHHHHHH
Q 042204 343 DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDAGLIGPLINLL-QNAEINIKNWAAWA 419 (559)
Q Consensus 343 ~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~~a~~a 419 (559)
+..-+.+++..++..+..+++......++.....+++-+.. .++..+-.+...+.+..++..= .-.+.++...=+..
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsf 95 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISF 95 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHH
Confidence 44667788889999999999874477888888877776654 3455555666666666666542 33467777777777
Q ss_pred HHHHhcCCCHHHHHHHHH--cCChHHH---HhcCCCCChHHHHHHHHHHHHHH
Q 042204 420 ISNATSGGSHEQIKYLVR--EKCIKPL---CDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 420 L~nl~~~~~~~~~~~l~~--~~~l~~L---~~lL~~~d~~v~~~~l~~l~~il 467 (559)
|..++..-+++.+..+.. .+-.|.+ +.+..++|+-++.++-..+.+++
T Consensus 96 LK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 96 LKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 777776555455444443 2344444 44557788877777666665543
No 390
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.77 E-value=7e+02 Score=27.97 Aligned_cols=300 Identities=15% Similarity=0.096 Sum_probs=147.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhh-hhhhc--cCCH
Q 042204 154 EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCR-DLVLS--EEAL 229 (559)
Q Consensus 154 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r-~~i~~--~g~l 229 (559)
++.--+|...+|.++.-.+ .++..... .-+-..++++|... +..++-.++.++.-...| .++. +.+.. .+..
T Consensus 498 ~~~RiiRRRVa~ilg~Wvs--vq~~~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD-~nF~~dsFlp~lenlf 573 (978)
T KOG1993|consen 498 GNSRIIRRRVAWILGQWVS--VQQKLELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD-WNFSEDSFLPYLENLF 573 (978)
T ss_pred cchhHHHHHHHHHHhhhhh--eechHhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhh-ccCChhhhhhhHHHHH
Confidence 3335688999999998876 22222221 12345788888876 666777788888776543 2222 22111 1223
Q ss_pred HHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhccCChhHHHH
Q 042204 230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLSNGKNDKIQA 306 (559)
Q Consensus 230 ~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~~~~~~~~ 306 (559)
..+..++..-..-+.+-..+.+++.+..............+++.+ ..+. ...+-.+...+.++.++...-......
T Consensus 574 ~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~l-p~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~ 652 (978)
T KOG1993|consen 574 VLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYL-PLLWEESEEEPLLRCALLATLRNLVNALGAQSFE 652 (978)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhhhccCcHHHHHHHHHHHHHHHHhccCCcc
Confidence 334444444445566666777777766433111111112222222 2221 234556667777777776332211111
Q ss_pred HHHhCcHHHHHHhhCC-CCCc---chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 307 VIEAGVCPRLVELLGH-RSSS---VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 307 ~~~~g~l~~L~~lL~~-~~~~---v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
+. .++-.++++-.+ +++. ..+.+...-+....+.+.....+. +++|.+...+... ...++ .+..++....
T Consensus 653 ~~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~L~-t~l~Ii~sYi 726 (978)
T KOG1993|consen 653 FY--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TENLP-TVLMIISSYI 726 (978)
T ss_pred ch--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hhhHH-HHHHHHHHHH
Confidence 11 122233333222 2222 223333332333333332222333 4677777777554 33222 2333333222
Q ss_pred c-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC--CCCChHHHHHH
Q 042204 383 A-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL--PCANPTIVTVC 459 (559)
Q Consensus 383 ~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL--~~~d~~v~~~~ 459 (559)
- .++...+ -...|++..+.+++.+-..+-....+..+..+... .+....+...++++.+..-+ +.+.|.+.-..
T Consensus 727 lLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~y 803 (978)
T KOG1993|consen 727 LLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRLFLSIAENDKYPYVMGEY 803 (978)
T ss_pred hhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHHHHHHHhCCCCchhHHHH
Confidence 2 3333222 22346788888888776666666677777777663 23444455566666555533 44556655555
Q ss_pred HHHHHHHH
Q 042204 460 LKGLENIL 467 (559)
Q Consensus 460 l~~l~~il 467 (559)
+..+.++.
T Consensus 804 l~vvaRi~ 811 (978)
T KOG1993|consen 804 LLVVARIS 811 (978)
T ss_pred HHHHHHHH
Confidence 55555554
No 391
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.20 E-value=1.6e+02 Score=26.87 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHhCCChHHHHHHhcCCCc-----------------hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCC
Q 042204 347 QCIINCGALPYLLVLLIHSHK-----------------KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAE 409 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~~-----------------~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~ 409 (559)
..+.+.|++..++.+|..+.. ..+-..++..|..++.+++++...+.+. ++.++..+....
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh
Confidence 345566888888887754211 3456778899999998888877776653 333333333221
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 410 INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
...--.+..++..+..+ +++....+.+. .+..+++++.....+ ..-++.|..+...+
T Consensus 115 ~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp H-TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred ccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccC
Confidence 11113456666777765 55555554444 488888888663322 23556666666543
No 392
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=33.78 E-value=5e+02 Score=26.05 Aligned_cols=130 Identities=10% Similarity=0.123 Sum_probs=80.2
Q ss_pred HHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH-hcCC---C-chhHHHHHHHHH
Q 042204 305 QAVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL-LIHS---H-KKSIKNHACWTI 378 (559)
Q Consensus 305 ~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l-L~~~---~-~~~v~~~a~~~L 378 (559)
+.+.+..++..|+.+-..+ .+.++..+++.+.++....+.. .+....+..++..+ +... . ...+.++-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 4566677888888886653 4668888888888888755432 23333566667776 5322 1 334566666666
Q ss_pred HHhhc---CCHHHHHHHHHcC--------------------------CHHHHHHHhhcCChhHHHHHHHHHHHHhcCC--
Q 042204 379 SKITA---GNREQIQAVIDAG--------------------------LIGPLINLLQNAEINIKNWAAWAISNATSGG-- 427 (559)
Q Consensus 379 ~nl~~---~~~~~~~~li~~~--------------------------~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-- 427 (559)
..+|. .+|.....+.+.+ ++..|+..+.++ -++-..|..++.-+..-.
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66664 4566555555321 356677777665 566666777776666554
Q ss_pred CHHHHHHHHH
Q 042204 428 SHEQIKYLVR 437 (559)
Q Consensus 428 ~~~~~~~l~~ 437 (559)
++....++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555666666
No 393
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=32.61 E-value=1e+02 Score=28.03 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=52.8
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHH
Q 042204 311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ 390 (559)
Q Consensus 311 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 390 (559)
...+.+...+.+++.-++..++-++.......+ .. ..+..+...+.++ +.-||+...|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 456777788888887777777766655544321 11 2344555556677 889999999999999998888877
Q ss_pred HHHHc
Q 042204 391 AVIDA 395 (559)
Q Consensus 391 ~li~~ 395 (559)
..++.
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 394
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.17 E-value=8e+02 Score=27.89 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=29.6
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.+.+...++.++.++....++.+..++..+|+.+.+.
T Consensus 185 ~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 185 WLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 3445567899999998777888899988888888876
No 395
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.69 E-value=59 Score=31.68 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=56.3
Q ss_pred cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-------------HHHHHHHHHcCChHHHHhcCCC--------C--
Q 042204 395 AGLIGPLINLLQNAEINIKNWAAWAISNATSGGS-------------HEQIKYLVREKCIKPLCDLLPC--------A-- 451 (559)
Q Consensus 395 ~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~-------------~~~~~~l~~~~~l~~L~~lL~~--------~-- 451 (559)
...+..+++-|...+...+..|+.+|..++.+.- ..+...|.+.|+++.|..+|.. .
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 3466778888988999999999999999998651 3455677789999999998721 0
Q ss_pred ----------ChHHHHHHHHHHHHHHHhhhhh
Q 042204 452 ----------NPTIVTVCLKGLENILKVGEAE 473 (559)
Q Consensus 452 ----------d~~v~~~~l~~l~~il~~~~~~ 473 (559)
+..-...++.++.-++......
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~ 170 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRD 170 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 1134556666666666655443
No 396
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=31.07 E-value=24 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.5
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 311 GVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 311 g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
.+...+...+.++++.||..|+.+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4567777888889999998887653
No 397
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=30.88 E-value=2.8e+02 Score=22.29 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=48.4
Q ss_pred CcHHHHHHhhCCCC--C--cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhc-C
Q 042204 311 GVCPRLVELLGHRS--S--SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITA-G 384 (559)
Q Consensus 311 g~l~~L~~lL~~~~--~--~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~-~ 384 (559)
|++..+...+.+.+ . .-+..++++++.+..-...... .+.|.+...|++. +.++++..|+.+-..+.. -
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666666676654 2 2377899999888774332222 3456666666542 145688888776666654 3
Q ss_pred CHHHHHHHHHc
Q 042204 385 NREQIQAVIDA 395 (559)
Q Consensus 385 ~~~~~~~li~~ 395 (559)
+++....+++.
T Consensus 86 ~~~~l~~ll~~ 96 (107)
T smart00802 86 KEEELGPLLDQ 96 (107)
T ss_pred CHHHHHHHHHH
Confidence 45666666553
No 398
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.60 E-value=9.2e+02 Score=28.11 Aligned_cols=135 Identities=11% Similarity=0.162 Sum_probs=84.7
Q ss_pred CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC--HHHHHHHHHcCCH
Q 042204 321 GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN--REQIQAVIDAGLI 398 (559)
Q Consensus 321 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~li~~~~i 398 (559)
.+-.+.+|.-++..||..+..-+ ..+++...+.++=-.|... +..||..+..+|-.+...+ ...++.+. ..+=
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-sRFK 371 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELFT-SRFK 371 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHHH-HHHH
Confidence 34578899999999998876554 4567777788888888888 8999999999999887541 22222222 2355
Q ss_pred HHHHHHh-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 399 GPLINLL-QNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 399 ~~Li~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
..++.+. .+.+..|+...+..+.-+...+ ++...-+..+..++-+.+++++..+...+..-+
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 5666666 2234444443333332222211 233334667778888888887777766655443
No 399
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.38 E-value=6.1e+02 Score=25.93 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHhcC--CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHH
Q 042204 156 YPQLQYEAAWALTNIASK--TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL 233 (559)
Q Consensus 156 ~~~~~~~a~~~L~nl~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll 233 (559)
+|.+|..=-..|.-+.+. ++...+..++...+-.|+.++.++++.-|+..-..|.+|.+.-...|..+.. +.-..++
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk-~iNNif~ 224 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRK-SINNIFL 224 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhh
Confidence 355554333333333331 3455566778889999999999999999999888899887655555544321 2222333
Q ss_pred HHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 234 AQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 234 ~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
+.+.....-.=....+..|..+..+.
T Consensus 225 ~FIyEte~hnGIaELLEIlgSiIngf 250 (457)
T KOG2085|consen 225 RFIYETERHNGIAELLEILGSIINGF 250 (457)
T ss_pred hhcccccccCCHHHHHHHHHHhcCcc
Confidence 33322222222334445555555555
No 400
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.20 E-value=1.5e+02 Score=24.90 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 042204 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWAL 167 (559)
Q Consensus 113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L 167 (559)
.+....++.++...++ --+...+.+.++++.+.++|.++ .++..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 7788889999999876 45677888888999999999654 4588888775
No 401
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.44 E-value=5.7e+02 Score=25.33 Aligned_cols=89 Identities=12% Similarity=0.007 Sum_probs=51.5
Q ss_pred CHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc--CChhHHH
Q 042204 228 ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN--GKNDKIQ 305 (559)
Q Consensus 228 ~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~~~~~ 305 (559)
++..++.++.+..++..+...+.++..=+..- .......++..+.+-+.+..+.++..-+..++.+.. .+... .
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~-~ 98 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS-L 98 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH-H
Confidence 46667777766667776666665555433221 111225566777778888887788777777777664 11111 1
Q ss_pred HHHHhCcHHHHHHhhC
Q 042204 306 AVIEAGVCPRLVELLG 321 (559)
Q Consensus 306 ~~~~~g~l~~L~~lL~ 321 (559)
.++ ..+++.|.+.++
T Consensus 99 ~~~-~~~~~~L~~~~~ 113 (339)
T PF12074_consen 99 KFA-EPFLPKLLQSLK 113 (339)
T ss_pred HHH-HHHHHHHHHHHH
Confidence 222 235677776664
No 402
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=7.2e+02 Score=26.49 Aligned_cols=249 Identities=14% Similarity=0.182 Sum_probs=121.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCH--HHHHHHHHHHHHHhCCCchhhhh
Q 042204 145 PRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPND--DIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 145 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
-.|-+.|++++ ..++..|+--|+..-++ .++..+ +..|..++.+.+. ++.-.|..+|+.+...... -+
T Consensus 453 alLs~yl~s~s-~k~~~aaiLGlg~afsG--t~~eev-----l~lL~Pi~~std~pie~~~~asltLg~vFvGtcn-gD- 522 (881)
T COG5110 453 ALLSNYLQSSS-SKHVIAAILGLGAAFSG--TQAEEV-----LELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCN-GD- 522 (881)
T ss_pred HHHHHhccCCc-hHHHHHHHhhhHHhhcC--CcHHHH-----HHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccC-ch-
Confidence 34455566666 45665555555554443 233333 2344444444443 6666677777776533221 01
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 302 (559)
+ ..-+++.++..=....+.+..+.....|..|..+........ ...+..+-.-+ +...++....|. |...++.-
T Consensus 523 ~-ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v-~eti~aIeg~l-s~~~eiLv~~c~---Y~GTGdvl 596 (881)
T COG5110 523 L-TSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDV-EETIMAIEGAL-SKHEEILVKGCQ---YVGTGDVL 596 (881)
T ss_pred H-HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchhHHH-HHHHHHhcchh-hhhHHHHHhhce---ecccCcHH
Confidence 1 111234444433223455666777777777776652211111 11111111111 112222222221 11112211
Q ss_pred HHHHHHHhCcHHHHHHhhCC--------CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHH
Q 042204 303 KIQAVIEAGVCPRLVELLGH--------RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHA 374 (559)
Q Consensus 303 ~~~~~~~~g~l~~L~~lL~~--------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a 374 (559)
. ++.|+..-.. .+..+..-|+--++-++-+.+-..+.+ +..+-.++..+ ++.+|+..
T Consensus 597 ~---------Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~ 661 (881)
T COG5110 597 V---------IQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVL 661 (881)
T ss_pred H---------HHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHH
Confidence 1 2222221111 112223334434444555555444433 45566677777 88899888
Q ss_pred HHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH
Q 042204 375 CWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ 431 (559)
Q Consensus 375 ~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 431 (559)
-.+.+-+...+|.. +++..|-+....++.++...++.+++-+-.+.....
T Consensus 662 PLa~gils~SnPQm-------~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaR 711 (881)
T COG5110 662 PLAYGILSPSNPQM-------NVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNAR 711 (881)
T ss_pred HHHHhcccCCCcch-------HHHHHHHHhccccchhHHHHHHHHhhccccCcchHH
Confidence 77777776655542 356777777888888999888888887666543333
No 403
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.88 E-value=1.6e+02 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=31.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID 183 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 183 (559)
+++.|+.-|.+++ +++...|..+|...+... +....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999888 899999999999999944 55555544
No 404
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.82 E-value=1.2e+02 Score=24.72 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDS 216 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 216 (559)
+++.|+.-|.+++++|...|+.+|...|.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 5788999999999999999999999998776
No 405
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=27.74 E-value=2.3e+02 Score=22.69 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=48.1
Q ss_pred CcHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhc-C
Q 042204 311 GVCPRLVELLGH----RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITA-G 384 (559)
Q Consensus 311 g~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~-~ 384 (559)
|++..+...+.+ .+...+..+++.|+.+..-...... .+.|.+...|++. +.++++..|+.+-..+.. -
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555555 3344677899999988874333332 3456666666542 145788888766666654 3
Q ss_pred CHHHHHHHHHc
Q 042204 385 NREQIQAVIDA 395 (559)
Q Consensus 385 ~~~~~~~li~~ 395 (559)
+++....+++.
T Consensus 86 ~~~~l~~ll~~ 96 (107)
T PF08064_consen 86 DEEDLGPLLDQ 96 (107)
T ss_pred CHHHHHHHHHH
Confidence 45555555543
No 406
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.71 E-value=4.3e+02 Score=23.37 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=71.7
Q ss_pred HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHH---HHHHHHHHh
Q 042204 394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCL---KGLENILKV 469 (559)
Q Consensus 394 ~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l---~~l~~il~~ 469 (559)
+.|..+-|.+.+.+....-...|......+...-..+.+..+++. +++.+.+.|.++ +.++...++ .++...++.
T Consensus 40 ~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql 118 (174)
T PF04510_consen 40 QEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQL 118 (174)
T ss_pred CCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHH
Confidence 556777777777654333346788888888733355666666665 777777777655 233332222 233333333
Q ss_pred hhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCH-HHHHHHHHHHHhhcCC
Q 042204 470 GEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENN-EIHEKSVKILETYWCG 524 (559)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~-~v~~~a~~il~~~f~~ 524 (559)
-+... ....+...+.. .++.+.++.+..++ ..-.+|..-+++++..
T Consensus 119 ~e~~~-------~~~~vk~L~~~--mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 119 LESSM-------RVDLVKELLPK--MVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred hcccc-------HHHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 22211 11223333332 57888888888888 8888899988888754
No 407
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=27.59 E-value=3.6e+02 Score=32.86 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=75.5
Q ss_pred HhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCCh
Q 042204 276 QLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL 355 (559)
Q Consensus 276 ~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l 355 (559)
.++++.++.++.-+......+....+. .....++..|+..+.+++..-...|+.+|..++.......... +..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l 515 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFL 515 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Confidence 345788899998888888877755543 2334577888888877666666789999999997555432211 1122
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 356 PYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 356 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
..+++.+..-....+| ....+++.++...... ..-+...+--.+-+.|.+.+++.++..+-+...+
T Consensus 516 ~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~-~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIR-KLFDILCTLAFSDSSS-SSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp HGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHHHHhcCCccc-chhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 2233333332123444 3466666665421111 1112222444455677788888776554444333
No 408
>PRK09169 hypothetical protein; Validated
Probab=26.93 E-value=1.4e+03 Score=29.21 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=8.0
Q ss_pred CHhHHHHHHHHHHHhc
Q 042204 282 DKEVLTDACWALYFLS 297 (559)
Q Consensus 282 d~~v~~~a~~~L~~l~ 297 (559)
++.-+.+++|+|+..-
T Consensus 329 ~aQ~vAN~LNALSKWp 344 (2316)
T PRK09169 329 NAQAVANALNALSKWP 344 (2316)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 4444555555555433
No 409
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=26.74 E-value=19 Score=18.05 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=8.7
Q ss_pred Cccchhhhcccc
Q 042204 11 PSLERLLVDDCT 22 (559)
Q Consensus 11 ~~l~~~~~~~c~ 22 (559)
|+|+.+.++.|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 688999999987
No 410
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=26.49 E-value=6.3e+02 Score=24.89 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHh-hc--------cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204 244 MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQL-VH--------SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP 314 (559)
Q Consensus 244 ~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~l-L~--------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 314 (559)
+++..+..+.......+.... .....+|.++.. |. ..++++..-....+..+-..-.+....+.+. ++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHH
Confidence 344455555555544332222 345566665553 31 2357777666666666665444555556654 666
Q ss_pred HHHHhhCCC---CCcchhhHHHHHHHhhcCCh--------HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 315 RLVELLGHR---SSSVLSPALQTIGHIVAGDD--------FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 315 ~L~~lL~~~---~~~v~~~al~~L~nl~~~~~--------~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
..+.++..+ -|+.+..-...|.++..... .+.+ .++..++..++|+ ..++...++.++..+..
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHT-NREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCC-cHHHHHHHHHHHHHHHH
Confidence 677777653 35667776666666665432 2222 3456777888999 99999999998888865
Q ss_pred ----CCHHHHHHHHHcCCH---HHHHHHhhcC-ChhHHHHHHHHHHHHh
Q 042204 384 ----GNREQIQAVIDAGLI---GPLINLLQNA-EINIKNWAAWAISNAT 424 (559)
Q Consensus 384 ----~~~~~~~~li~~~~i---~~Li~lL~~~-~~~v~~~a~~aL~nl~ 424 (559)
.+++..+...+.-.+ ..++..+.++ +...-+.-+..|.++.
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 245555555554333 3334444443 2223333334444444
No 411
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=8.3e+02 Score=29.71 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=106.9
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC----CCCcchhh-HHH--HHHHhhc
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH----RSSSVLSP-ALQ--TIGHIVA 340 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~----~~~~v~~~-al~--~L~nl~~ 340 (559)
.+++-.+..-+++.|+.++..++|++...-++-....+...+.-.+-.+..+.++ +++++..- ++. -..+++.
T Consensus 1438 ~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~ill 1517 (1758)
T KOG1791|consen 1438 RGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFSDILL 1517 (1758)
T ss_pred cccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHHHc
Confidence 4556666667788999999999998876654433321121111122333333332 23332221 111 1233333
Q ss_pred CChHH----------HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHcCCHHHHHHHhhcC
Q 042204 341 GDDFQ----------TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDAGLIGPLINLLQNA 408 (559)
Q Consensus 341 ~~~~~----------~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~~~i~~Li~lL~~~ 408 (559)
...+. ....++-..+|.+...+.+. .++-+.+--|.+.-+.. .+...++.+...+.+..++....++
T Consensus 1518 ~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~ 1596 (1758)
T KOG1791|consen 1518 VPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSP 1596 (1758)
T ss_pred CCccccchhHHHHHHhhhhcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcch
Confidence 33211 11234556778888888776 66656566676666654 3556677788888888888888775
Q ss_pred --ChhHHHHHHHHHHHHhcCCCHHHHHHH-HHcCChHHHHhcCCCC
Q 042204 409 --EINIKNWAAWAISNATSGGSHEQIKYL-VREKCIKPLCDLLPCA 451 (559)
Q Consensus 409 --~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~~~l~~L~~lL~~~ 451 (559)
+.+.+.-....|++-+.. |.....+ -..|+...+..++.+.
T Consensus 1597 l~~~~S~~LIL~~L~~~Vk~--p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1597 LASEESKRLILATLQKGVKF--PFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred hHHHHHHHHHHHHHHhcCCC--cHHHHHHHhcccHHHHHHHhcccc
Confidence 566666777777777664 3333344 4578899999999775
No 412
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=1.3e+03 Score=28.00 Aligned_cols=254 Identities=11% Similarity=0.139 Sum_probs=125.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHH----HHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRF----VEFLMREDYPQLQYEAAWALTNIASKTS 175 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~L----v~lL~~~~~~~~~~~a~~~L~nl~~~~~ 175 (559)
.+..+++.|...|+..+..|+..|..+....+.+.. .|++|.. .+++.+++ ..+|...-.++.++...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHH-----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998664322221 1234332 34455666 8999999999999887321
Q ss_pred hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC--CHHHHHHHhc----------------
Q 042204 176 EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE--ALIPLLAQLN---------------- 237 (559)
Q Consensus 176 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~l~~Ll~ll~---------------- 237 (559)
....... ...++..+-.-.+.+..+...|-..+-.... ....|......+ ......+.+.
T Consensus 116 k~lsp~L-K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~-~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFL-KSLIPPWLGGQFDLDYPVSEAAKASFKDGFA-EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHH-HhhhhhhhheecccchHHHHHHHHHHHhhcC-hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 1111111 1222332222223344444444444443322 111122211111 1111111110
Q ss_pred --hhhhHhHHHHHHHHHHHhhcCC-CCCcHh----hHhc--hHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204 238 --EHAKLSMLRTATWTLSNFCRGM-PRPIFE----QVRP--ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI 308 (559)
Q Consensus 238 --~~~~~~~~~~a~~~L~nL~~~~-~~~~~~----~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 308 (559)
......+...++-++..+.... +..... .... .-..+..++++..+.+.......+..+++.-... -.-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~-~~~~ 272 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR-VMES 272 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh-cchh
Confidence 0112234444555555554322 111111 1111 2244667778888999999999998888654433 1111
Q ss_pred HhCcHHHHH-HhhCCCCCcchhhHHHHHH-HhhcCChHHHHHH--HhCCChHHHHHHhc
Q 042204 309 EAGVCPRLV-ELLGHRSSSVLSPALQTIG-HIVAGDDFQTQCI--INCGALPYLLVLLI 363 (559)
Q Consensus 309 ~~g~l~~L~-~lL~~~~~~v~~~al~~L~-nl~~~~~~~~~~~--~~~g~l~~L~~lL~ 363 (559)
+...+...+ ....+.+ .+.......+. ++....+.....- ...++++.+..+++
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 223333333 3333333 34444444444 2233333322222 45578888888887
No 413
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=25.26 E-value=1.2e+02 Score=27.67 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=36.5
Q ss_pred hhhhhccCCHHHHHHHhchhhh-----------------HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC
Q 042204 220 RDLVLSEEALIPLLAQLNEHAK-----------------LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND 282 (559)
Q Consensus 220 r~~i~~~g~l~~Ll~ll~~~~~-----------------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d 282 (559)
++.+.+.|++..++.+|....+ ..+...+...|..+|++. .........-++.+...+....
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n-~~NQ~~l~~~~~~l~~~~~~~~ 114 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGN-RENQKYLFKHLDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHhHHHHHHHHhh
Confidence 3455566667777776642211 346677778888888775 2333333334443322222211
Q ss_pred HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 283 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
...-..+..++..+...+.+....+.+. .+..++.++..... ...-+..|+.++.
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp H-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCC--ChHHHHHHhhhcc
Confidence 1111234445555555555444444433 36666776655221 1224444554444
No 414
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=24.98 E-value=6.7e+02 Score=24.68 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=100.4
Q ss_pred cHHHHHHhhCCC----CCcchhhHHHHHHHhhcCChHHHHHHHhC--------C---ChHHHHHHhc------CCCchhH
Q 042204 312 VCPRLVELLGHR----SSSVLSPALQTIGHIVAGDDFQTQCIINC--------G---ALPYLLVLLI------HSHKKSI 370 (559)
Q Consensus 312 ~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~--------g---~l~~L~~lL~------~~~~~~v 370 (559)
++..|+.++-.. .-.+|..|+.++.....++++....+++. . ...-|...|- +. ++--
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~ 113 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYR 113 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHH
Confidence 344455544333 23578899999999999888765555431 1 1112444443 22 3333
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHc-------C-----CHHHHHHHhhc-----CChhHHHHHHHHHHHHhcCCCHHHHH
Q 042204 371 KNHACWTISKITAGNREQIQAVIDA-------G-----LIGPLINLLQN-----AEINIKNWAAWAISNATSGGSHEQIK 433 (559)
Q Consensus 371 ~~~a~~~L~nl~~~~~~~~~~li~~-------~-----~i~~Li~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~ 433 (559)
-..|+.++..+...+++....+..- | .++.+..+|.. .+++++.--+..|+..... ++..+.
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~ 192 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHH
Confidence 4568888888888777765554421 1 35556666543 3566666666666666655 677777
Q ss_pred HHHHcC-ChHHHHhcCC-C--CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHH-HHhccHHHHHHHhcCC
Q 042204 434 YLVREK-CIKPLCDLLP-C--ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLV-EEAEGLEKIENLQSHE 506 (559)
Q Consensus 434 ~l~~~~-~l~~L~~lL~-~--~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i-~~~g~l~~l~~L~~~~ 506 (559)
.++..+ .++.|++... . .+.-|+-.|.-.|.-...+..+.... .-..+...| .+.|.-.-+.++..-.
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~-----~R~~l~~ll~~riG~d~y~~kl~~lr 265 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPI-----PRATLHPLLTKRIGRDNYFSKLEQLR 265 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC------HHHHHHHHHHHT-HHHHHHHHHCCC
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCc-----CHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 777664 6888888642 2 34455555666666666665433221 112344444 3455444444444333
No 415
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.72 E-value=7.8e+02 Score=26.82 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=0.0
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHH
Q 042204 351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE 430 (559)
Q Consensus 351 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 430 (559)
+..++|.|++.|..-...+--..+...|--++..+.++.. +.+.++..+...+..-.+.....+..........
T Consensus 357 n~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~------l~e~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s 430 (896)
T KOG4337|consen 357 NDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEK------LHEQLLYWLGSADHPSEETIATLLNKRCEASISS 430 (896)
T ss_pred hhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHH------HHHHHHHHhhccCCCcHHHHHHHHHHHhhhhhhh
Q ss_pred HHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC----
Q 042204 431 QIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH---- 505 (559)
Q Consensus 431 ~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~---- 505 (559)
.... ..+++...-.+.. -....+-..++.-+.+++--+-...+.+. ..+.|...+...-.-..|++|..+
T Consensus 431 ~~~~--re~v~~iv~tlir~~~~~gve~~~l~e~~~~ilgglt~aek~~---~s~~y~~Al~N~~lPa~i~~Lle~a~sG 505 (896)
T KOG4337|consen 431 LNSC--REGVETIVNTLIRDLTAGGVEVRVLEELENIILGGLTFAEKFI---ESEDYQKALLNVILPAAIKNLLETAVSG 505 (896)
T ss_pred hHHH--hhhHHHHHHHHHHHhhCCCcccHHHHHHHHHHhccchhccccc---chHHHHHHHHhccChhhHHHHHHHHhcc
Q ss_pred CCHHHHHHHHHHHHhhc
Q 042204 506 ENNEIHEKSVKILETYW 522 (559)
Q Consensus 506 ~~~~v~~~a~~il~~~f 522 (559)
..|++..+|...+.+||
T Consensus 506 e~p~~s~~atsAl~~f~ 522 (896)
T KOG4337|consen 506 EKPEQSMRATSALAEFF 522 (896)
T ss_pred CCcchhHHHHHHHHhcC
No 416
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.39 E-value=3.9e+02 Score=21.73 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=45.3
Q ss_pred HhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcc-hhhHHHHHHHhhcCC
Q 042204 267 VRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSV-LSPALQTIGHIVAGD 342 (559)
Q Consensus 267 ~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v-~~~al~~L~nl~~~~ 342 (559)
+..++|.+...+. +..++.+..+...++.++...+=. .. ++..+++.+ .+....- ...++-++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4567888888888 778999999999999998543311 22 233333332 2222222 478888888888543
No 417
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.34 E-value=8.8e+02 Score=25.83 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=61.0
Q ss_pred hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc----------cCCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204 240 AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH----------SNDKEVLTDACWALYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 240 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 309 (559)
.+...+.++....+.|..+........+..++|.++.++- ++...++.-|...+.+++......... +.
T Consensus 259 ~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~ 337 (576)
T KOG2549|consen 259 NNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQ 337 (576)
T ss_pred ccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 4566777788888888887644444556778888877663 223557888888888888655544433 44
Q ss_pred hCcHHHHHHhhCCCC--CcchhhHHHHHHHh
Q 042204 310 AGVCPRLVELLGHRS--SSVLSPALQTIGHI 338 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~--~~v~~~al~~L~nl 338 (559)
..++..+...+.+.. .....-|+..|..+
T Consensus 338 ~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 338 PRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 456666666665542 23344444444444
No 418
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.58 E-value=6.3e+02 Score=27.92 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 215 DSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 215 ~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
..|.+|..+...|++..+++.+.+......+..+..+|..|..
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs 405 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLS 405 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 4577999999999999999999666555555555555555543
No 419
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=23.39 E-value=1.4e+03 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 496 LEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 496 l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
+.+|.+|.+....+|.-+|.+||.++
T Consensus 987 L~~l~~L~~~~~~eVal~Ar~iLi~~ 1012 (2196)
T KOG0368|consen 987 LRKLTELNHTNTSEVALKARQILIQS 1012 (2196)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHhC
Confidence 34556666667788888999998766
No 420
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.61 E-value=5.1e+02 Score=22.48 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=50.4
Q ss_pred HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHH-HhcCCC-chhHHHHHHHHHHHhh
Q 042204 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV-LLIHSH-KKSIKNHACWTISKIT 382 (559)
Q Consensus 305 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 382 (559)
..+++..+++.+.+.+.+++..+...+++++..+...-....+.=++ -.+..+.. ++.++. ...-|..+..++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34666678889998888878888899999999988533221111111 12344444 555442 2356666888888887
Q ss_pred cC
Q 042204 383 AG 384 (559)
Q Consensus 383 ~~ 384 (559)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 53
No 421
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.60 E-value=1.2e+03 Score=26.23 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-------c--
Q 042204 369 SIKNHACWTISKITAGNREQIQAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR-------E-- 438 (559)
Q Consensus 369 ~v~~~a~~~L~nl~~~~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~-- 438 (559)
....+++.+|-.+... .-.+..++ ...-+-.|...+.-..+.+...++..++.++..+.......+.. .
T Consensus 207 k~~~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 3445666666555421 11122222 11224445555555556666677777766665543222222211 1
Q ss_pred -CChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 042204 439 -KCIKPLCDLLPCA-NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVK 516 (559)
Q Consensus 439 -~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~ 516 (559)
.-..+|++.|... +..+...|...|..+......++ ---.++..+.++|.-+.|.++....|+. ...+.+
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dld-------fRlhlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlk 357 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLD-------FRLHLRSEFMRDGLHKYLPDLTEINNDI-LDVQLK 357 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhh-------HHHHHHHHHHHHhHHHHHHHhhhhccHH-HHHHHH
Confidence 1245666666655 55666666665544443332221 0112455567789888999887664444 344444
Q ss_pred HHH
Q 042204 517 ILE 519 (559)
Q Consensus 517 il~ 519 (559)
+++
T Consensus 358 vfd 360 (1102)
T KOG1924|consen 358 VFD 360 (1102)
T ss_pred HHh
Confidence 443
No 422
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.60 E-value=6.6e+02 Score=23.38 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCc--------c----------hhhHHHHHHHhhcCChH
Q 042204 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSS--------V----------LSPALQTIGHIVAGDDF 344 (559)
Q Consensus 283 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~--------v----------~~~al~~L~nl~~~~~~ 344 (559)
.....-+|..+..|... ++-...+.+.++++.+.+.|..-++. + ...=...||.++. ++.
T Consensus 78 ~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TPN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Chh
Confidence 55667777788888755 34445666778888888877543110 1 1112456777765 444
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
..+.+-+.+++..+..+........+. ..+++++-.+.+...+. .|-+.|..++..+|..|...|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~---klil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLL---KLILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHH---HHHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 556666778999999988775232222 23555553332222232 3455677888899998888887664
No 423
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.62 E-value=1.4e+02 Score=31.03 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=52.1
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 311 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
.....+-.+..+.++.++..|..++++++.........+-+...-..++.++..+ .+.+-+.++.++.-+.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 3455566666778999999999999999987665543333445556677788777 7888888888887664
No 424
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.22 E-value=1.1e+03 Score=25.56 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHh--hHhchHHHH
Q 042204 197 PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFE--QVRPALPVL 274 (559)
Q Consensus 197 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~--~~~~~l~~L 274 (559)
-++.+|-.|+..|+--++.-|. .+.+-.++.+.--.| .+.+..++.....++-.|+...|..... .....-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4567777777777776665554 233333444444455 6778899999999999999987665522 224455566
Q ss_pred HHhhccCCHhHHHHHHHHHHHhc
Q 042204 275 AQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 275 ~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
++++..+..-|+..++..+.++.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 77776554448888777776664
Done!