Query 042204
Match_columns 559
No_of_seqs 483 out of 2777
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 3.2E-67 1.1E-71 558.0 44.8 481 46-534 23-509 (529)
2 3ul1_B Importin subunit alpha- 100.0 3.2E-63 1.1E-67 524.3 45.2 427 100-534 58-490 (510)
3 4b8j_A Importin subunit alpha- 100.0 2.7E-56 9.1E-61 475.3 47.7 480 46-529 23-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 9.6E-54 3.3E-58 455.6 42.9 479 46-528 28-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 2.1E-47 7.2E-52 398.4 44.6 427 100-529 21-449 (450)
6 3nmz_A APC variant protein; pr 100.0 3.1E-41 1.1E-45 345.1 30.0 366 96-470 29-452 (458)
7 3now_A UNC-45 protein, SD10334 100.0 8.8E-41 3E-45 360.1 31.9 368 99-473 377-787 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 4.3E-40 1.5E-44 342.2 32.5 365 143-526 3-452 (457)
9 3tpo_A Importin subunit alpha- 100.0 8.3E-39 2.8E-43 339.6 36.4 368 98-469 118-498 (529)
10 3ul1_B Importin subunit alpha- 100.0 4.2E-39 1.4E-43 339.9 33.2 369 98-470 99-480 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-37 4.1E-42 331.6 37.5 402 99-521 101-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 2.6E-37 8.9E-42 336.2 38.4 405 99-526 98-550 (644)
13 1xm9_A Plakophilin 1; armadill 100.0 2.3E-38 7.7E-43 329.3 23.6 361 100-469 3-450 (457)
14 3now_A UNC-45 protein, SD10334 100.0 3.7E-36 1.3E-40 324.1 35.7 405 99-524 290-738 (810)
15 2jdq_A Importin alpha-1 subuni 100.0 2.5E-36 8.7E-41 314.6 33.2 366 99-469 64-444 (450)
16 1wa5_B Importin alpha subunit; 100.0 7.1E-36 2.4E-40 317.8 35.3 369 99-471 130-513 (530)
17 3l6x_A Catenin delta-1; cateni 100.0 1.7E-36 6E-41 316.5 29.0 363 99-469 48-477 (584)
18 4b8j_A Importin subunit alpha- 100.0 6.8E-36 2.3E-40 317.9 33.7 367 99-470 117-498 (528)
19 3l6x_A Catenin delta-1; cateni 100.0 1.1E-35 3.8E-40 310.4 31.9 368 140-525 46-478 (584)
20 2z6g_A B-catenin; FULL-length, 100.0 1.6E-34 5.4E-39 319.2 41.5 405 99-526 234-686 (780)
21 3nmz_A APC variant protein; pr 100.0 1.6E-34 5.6E-39 295.4 25.4 327 97-427 68-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 6.5E-34 2.2E-38 302.7 31.0 413 99-523 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-32 4E-37 299.6 33.7 403 99-523 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 2.1E-32 7.3E-37 302.2 33.0 402 99-522 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 1.9E-30 6.4E-35 258.0 26.1 273 196-471 43-337 (354)
26 3nmw_A APC variant protein; AR 100.0 1.3E-30 4.5E-35 259.1 22.7 268 158-428 47-337 (354)
27 4hxt_A De novo protein OR329; 100.0 4E-27 1.4E-31 224.9 24.6 240 142-384 2-242 (252)
28 1xqr_A HSPBP1 protein; armadil 100.0 5.3E-27 1.8E-31 226.9 22.4 235 283-526 54-290 (296)
29 4db8_A Armadillo-repeat protei 100.0 2.9E-27 1E-31 226.2 19.5 239 142-383 12-251 (252)
30 4hxt_A De novo protein OR329; 99.9 2.2E-26 7.6E-31 219.7 24.1 241 185-427 2-243 (252)
31 4db8_A Armadillo-repeat protei 99.9 9.3E-27 3.2E-31 222.6 20.1 238 100-340 13-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 1.6E-24 5.4E-29 229.1 21.3 322 99-425 334-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 2.7E-23 9.4E-28 219.7 25.4 361 99-471 296-731 (778)
34 4db6_A Armadillo repeat protei 99.9 4.1E-23 1.4E-27 191.5 23.4 198 268-467 11-208 (210)
35 1xqr_A HSPBP1 protein; armadil 99.9 1.7E-22 5.7E-27 195.4 22.8 188 157-345 54-243 (296)
36 4db6_A Armadillo repeat protei 99.9 8.4E-23 2.9E-27 189.4 20.1 199 140-340 10-209 (210)
37 3tt9_A Plakophilin-2; cell adh 99.9 4.2E-21 1.4E-25 177.5 15.0 197 143-341 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 1E-20 3.5E-25 174.9 13.4 196 100-299 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 8.4E-17 2.9E-21 172.8 27.1 380 101-522 205-586 (588)
40 4fdd_A Transportin-1; heat rep 99.8 3.8E-17 1.3E-21 183.4 23.4 353 100-471 91-474 (852)
41 1b3u_A Protein (protein phosph 99.7 2.2E-16 7.5E-21 169.6 26.1 381 100-523 165-548 (588)
42 4fdd_A Transportin-1; heat rep 99.7 1E-16 3.4E-21 180.0 24.0 395 100-523 49-471 (852)
43 2vgl_B AP-2 complex subunit be 99.7 3.1E-16 1.1E-20 168.1 24.5 331 101-470 88-421 (591)
44 1oyz_A Hypothetical protein YI 99.7 3.7E-16 1.3E-20 151.4 20.7 260 138-465 19-279 (280)
45 3grl_A General vesicular trans 99.7 2.6E-14 8.8E-19 147.6 35.2 411 99-523 60-550 (651)
46 3grl_A General vesicular trans 99.7 2.3E-14 7.8E-19 148.0 30.9 368 99-473 21-454 (651)
47 2vgl_B AP-2 complex subunit be 99.7 7.8E-15 2.7E-19 157.2 23.6 330 100-469 50-383 (591)
48 1oyz_A Hypothetical protein YI 99.6 4.5E-14 1.5E-18 136.6 23.2 257 182-519 20-278 (280)
49 2bpt_A Importin beta-1 subunit 99.6 4.1E-14 1.4E-18 159.0 25.8 354 100-470 325-713 (861)
50 2bpt_A Importin beta-1 subunit 99.6 3.8E-14 1.3E-18 159.2 24.5 401 100-522 370-810 (861)
51 1ibr_B P95, importin beta-1 su 99.6 1.8E-13 6E-18 142.2 22.8 389 101-523 3-437 (462)
52 1qgr_A Protein (importin beta 99.6 2.1E-13 7.1E-18 153.5 25.2 406 100-522 367-826 (876)
53 1w63_A Adapter-related protein 99.6 1.7E-13 5.8E-18 147.3 22.6 292 100-425 71-414 (618)
54 1qgr_A Protein (importin beta 99.6 4.2E-13 1.4E-17 151.0 26.6 275 100-383 173-479 (876)
55 1ibr_B P95, importin beta-1 su 99.5 2.6E-14 8.9E-19 148.5 13.4 360 100-471 36-440 (462)
56 1u6g_C TIP120 protein, CAND1; 99.5 1E-12 3.4E-17 153.3 26.1 407 99-523 6-463 (1230)
57 1w63_A Adapter-related protein 99.5 7E-12 2.4E-16 134.8 29.4 357 100-521 35-412 (618)
58 3ltm_A Alpha-REP4; protein eng 99.4 6.5E-12 2.2E-16 115.8 19.2 188 184-427 18-205 (211)
59 1u6g_C TIP120 protein, CAND1; 99.4 5.1E-12 1.8E-16 147.3 22.7 399 99-522 86-547 (1230)
60 3ltj_A Alpharep-4; protein eng 99.4 1.1E-11 3.9E-16 113.2 20.1 184 185-424 14-197 (201)
61 3ltm_A Alpha-REP4; protein eng 99.4 5.1E-12 1.7E-16 116.5 17.7 187 141-384 18-204 (211)
62 3ltj_A Alpharep-4; protein eng 99.4 5.6E-12 1.9E-16 115.3 17.1 184 142-382 14-197 (201)
63 2vgl_A Adaptor protein complex 99.3 9.3E-10 3.2E-14 117.9 31.0 331 100-468 75-433 (621)
64 2vgl_A Adaptor protein complex 99.2 1.4E-09 4.9E-14 116.5 24.0 330 99-468 111-470 (621)
65 4gmo_A Putative uncharacterize 99.2 3.6E-10 1.2E-14 122.6 17.2 217 141-382 34-257 (684)
66 2db0_A 253AA long hypothetical 99.0 6.9E-08 2.4E-12 82.2 20.4 219 182-426 29-247 (253)
67 3b2a_A TON_1937, putative unch 99.0 2.1E-08 7.2E-13 89.2 16.4 224 268-521 32-259 (265)
68 4ady_A RPN2, 26S proteasome re 98.9 1.5E-07 5E-12 102.3 23.5 273 100-428 393-679 (963)
69 3tjz_B Coatomer subunit gamma; 98.9 6.4E-08 2.2E-12 94.7 18.0 278 99-421 68-349 (355)
70 3tjz_B Coatomer subunit gamma; 98.9 4.9E-08 1.7E-12 95.5 17.1 316 100-463 27-348 (355)
71 4gmo_A Putative uncharacterize 98.9 7.5E-09 2.6E-13 112.3 11.7 197 269-469 35-259 (684)
72 4ady_A RPN2, 26S proteasome re 98.7 8.8E-07 3E-11 96.3 21.8 270 143-468 393-676 (963)
73 1ho8_A Vacuolar ATP synthase s 98.7 4E-06 1.4E-10 83.8 23.5 321 184-521 76-474 (480)
74 2qk2_A LP04448P; mini spindles 98.7 1.2E-07 4.2E-12 88.9 11.7 185 231-426 19-206 (242)
75 2db0_A 253AA long hypothetical 98.7 6.9E-06 2.4E-10 70.0 20.8 216 140-383 30-246 (253)
76 3b2a_A TON_1937, putative unch 98.7 1.9E-06 6.5E-11 76.8 17.9 187 99-299 33-219 (265)
77 2qk2_A LP04448P; mini spindles 98.6 1.7E-07 5.7E-12 88.0 11.8 186 188-383 18-205 (242)
78 1te4_A Conserved protein MTH18 98.5 3.8E-08 1.3E-12 82.8 4.1 120 310-465 11-130 (131)
79 1te4_A Conserved protein MTH18 98.5 2.3E-08 7.8E-13 84.2 1.5 121 141-296 11-131 (131)
80 2qk1_A Protein STU2; STU2P, XM 98.5 8.7E-07 3E-11 83.2 12.4 191 232-425 21-220 (249)
81 2iw3_A Elongation factor 3A; a 98.5 1.5E-05 5.2E-10 87.8 23.7 303 98-425 13-324 (986)
82 2qk1_A Protein STU2; STU2P, XM 98.5 8.6E-07 2.9E-11 83.3 11.7 194 189-383 20-220 (249)
83 1ho8_A Vacuolar ATP synthase s 98.3 0.00023 8E-09 71.2 25.2 323 142-469 77-477 (480)
84 4hat_C Exportin-1; heat repeat 98.3 0.00026 8.8E-09 79.8 28.3 339 110-471 206-621 (1023)
85 1wa5_C Importin alpha RE-expor 98.3 0.00061 2.1E-08 77.0 30.6 386 101-524 37-526 (960)
86 1wa5_C Importin alpha RE-expor 98.2 0.0005 1.7E-08 77.8 28.6 344 102-469 88-526 (960)
87 2x1g_F Cadmus; transport prote 98.2 0.00015 5.2E-09 82.2 24.1 325 114-469 204-616 (971)
88 2iw3_A Elongation factor 3A; a 98.1 0.00023 8E-09 78.4 22.5 300 147-472 19-328 (986)
89 2x1g_F Cadmus; transport prote 98.1 0.00014 4.9E-09 82.4 21.1 301 154-472 476-818 (971)
90 3dad_A FH1/FH2 domain-containi 98.0 7.5E-05 2.6E-09 71.0 14.0 186 272-458 121-326 (339)
91 2x19_B Importin-13; nuclear tr 98.0 0.00039 1.3E-08 78.7 21.8 338 152-524 459-847 (963)
92 3m1i_C Exportin-1; heat repeat 98.0 0.0024 8.2E-08 72.9 28.1 339 111-470 207-620 (1049)
93 3dad_A FH1/FH2 domain-containi 98.0 0.00012 4.1E-09 69.7 13.9 189 314-512 121-325 (339)
94 3m1i_C Exportin-1; heat repeat 97.9 0.023 7.9E-07 64.7 33.8 354 100-471 139-572 (1049)
95 2x19_B Importin-13; nuclear tr 97.8 0.001 3.4E-08 75.3 20.1 330 109-469 459-847 (963)
96 4hat_C Exportin-1; heat repeat 97.7 0.02 6.7E-07 64.5 28.1 389 111-523 465-929 (1023)
97 3ibv_A Exportin-T; karyopherin 97.6 0.00042 1.4E-08 77.9 14.4 304 109-428 203-569 (980)
98 4ffb_C Protein STU2; tubulin f 97.6 0.0011 3.8E-08 63.1 14.5 191 100-299 11-213 (278)
99 3oc3_A Helicase MOT1, MOT1; re 97.5 5.4E-05 1.9E-09 76.0 4.6 217 99-339 174-403 (800)
100 3gjx_A Exportin-1; transport, 97.3 0.031 1E-06 62.9 23.6 295 110-427 218-597 (1073)
101 3c2g_A SYS-1 protein; beta-cat 97.3 0.017 5.8E-07 54.5 17.4 372 100-521 189-616 (619)
102 3ibv_A Exportin-T; karyopherin 97.2 0.0076 2.6E-07 67.7 17.2 306 154-472 205-570 (980)
103 1upk_A MO25 protein; transfera 97.1 0.022 7.4E-07 54.2 17.1 201 180-383 73-283 (341)
104 3gjx_A Exportin-1; transport, 97.1 0.2 7E-06 56.3 27.9 312 144-472 208-599 (1073)
105 4ffb_C Protein STU2; tubulin f 97.1 0.0044 1.5E-07 58.8 12.1 186 232-426 14-213 (278)
106 2of3_A ZYG-9; multifunctional 97.0 0.0026 9.1E-08 59.1 9.8 179 274-469 51-237 (266)
107 3oc3_A Helicase MOT1, MOT1; re 96.9 0.012 4E-07 59.6 13.0 244 143-421 175-432 (800)
108 2of3_A ZYG-9; multifunctional 96.8 0.019 6.4E-07 53.4 13.1 132 239-383 98-236 (266)
109 1upk_A MO25 protein; transfera 96.8 0.11 3.7E-06 49.4 18.4 199 223-426 74-284 (341)
110 2fv2_A RCD1 required for cell 96.7 0.15 5.2E-06 46.3 18.3 185 282-469 14-225 (268)
111 1lrv_A LRV, leucine-rich repea 96.3 0.00039 1.3E-08 64.3 -1.3 185 149-463 57-241 (244)
112 3u0r_A Apoptosis inhibitor 5; 95.9 0.2 6.9E-06 49.9 15.3 122 197-338 40-161 (507)
113 3l9t_A Putative uncharacterize 95.9 0.1 3.4E-06 47.1 12.0 146 143-310 72-219 (240)
114 2fv2_A RCD1 required for cell 95.6 0.45 1.5E-05 43.2 15.2 190 324-519 14-220 (268)
115 3l9t_A Putative uncharacterize 95.6 0.19 6.5E-06 45.3 12.7 142 268-437 70-218 (240)
116 3a6p_A Exportin-5; exportin-5, 95.5 5 0.00017 46.2 28.4 301 99-426 11-381 (1204)
117 2f31_A Diaphanous protein homo 95.5 0.54 1.8E-05 42.9 15.9 155 104-260 5-183 (233)
118 3eg5_B Protein diaphanous homo 95.4 0.65 2.2E-05 45.8 17.2 157 103-261 70-250 (383)
119 1lsh_A Lipovitellin (LV-1N, LV 95.3 0.93 3.2E-05 51.3 20.2 208 186-430 357-581 (1056)
120 2f31_A Diaphanous protein homo 95.0 0.37 1.3E-05 44.0 13.3 163 342-513 33-218 (233)
121 1lrv_A LRV, leucine-rich repea 94.9 0.0053 1.8E-07 56.7 0.5 44 145-207 101-144 (244)
122 3gs3_A Symplekin, LD45768P; he 94.9 2.3 8E-05 39.1 20.6 102 100-212 16-117 (257)
123 3c2g_A SYS-1 protein; beta-cat 94.7 0.4 1.4E-05 45.4 12.2 180 285-467 259-472 (619)
124 3ebb_A Phospholipase A2-activa 94.5 0.95 3.3E-05 43.0 15.0 173 144-322 105-287 (304)
125 3ebb_A Phospholipase A2-activa 94.4 0.27 9.4E-06 46.7 11.1 112 146-258 151-264 (304)
126 3u0r_A Apoptosis inhibitor 5; 94.3 1.8 6.1E-05 43.3 16.8 201 240-467 40-249 (507)
127 3eg5_B Protein diaphanous homo 94.3 0.53 1.8E-05 46.4 13.4 163 341-512 98-283 (383)
128 1lsh_A Lipovitellin (LV-1N, LV 94.0 3.5 0.00012 46.6 20.8 244 100-385 312-578 (1056)
129 2bnx_A Diaphanous protein homo 93.9 2.2 7.6E-05 42.0 16.9 157 103-261 8-188 (386)
130 3a6p_A Exportin-5; exportin-5, 93.6 3.2 0.00011 47.7 19.9 293 146-468 16-380 (1204)
131 3o2t_A Symplekin; heat repeat, 93.1 4.7 0.00016 39.4 17.2 88 114-212 40-127 (386)
132 2bnx_A Diaphanous protein homo 92.8 2.5 8.4E-05 41.7 15.1 160 344-512 39-221 (386)
133 3qml_C Protein SLS1, nucleotid 87.0 5.4 0.00019 37.3 11.0 148 271-425 24-189 (315)
134 3fga_B Serine/threonine-protei 85.5 19 0.00066 35.2 14.7 232 178-426 122-367 (403)
135 1vdy_A Hypothetical protein (R 83.6 3.5 0.00012 33.8 7.2 78 440-529 50-136 (140)
136 3ldz_A STAM-1, signal transduc 83.4 2.5 8.4E-05 34.9 6.4 72 397-468 43-114 (140)
137 1x5b_A Signal transducing adap 81.7 3 0.0001 35.4 6.4 74 99-172 52-125 (163)
138 3gs3_A Symplekin, LD45768P; he 81.4 32 0.0011 31.4 13.7 138 369-522 30-172 (257)
139 2npp_B PP2A, B subunit, serine 81.1 34 0.0012 34.0 14.7 227 100-345 163-404 (449)
140 1x5b_A Signal transducing adap 80.9 3.6 0.00012 34.9 6.7 71 440-522 53-124 (163)
141 3qml_C Protein SLS1, nucleotid 80.4 6.4 0.00022 36.8 8.5 133 327-468 44-189 (315)
142 3ldz_A STAM-1, signal transduc 80.1 2.7 9.2E-05 34.7 5.5 73 99-172 42-114 (140)
143 2npp_B PP2A, B subunit, serine 80.1 50 0.0017 32.9 18.1 235 175-426 152-400 (449)
144 3o2t_A Symplekin; heat repeat, 79.6 9.4 0.00032 37.3 9.9 119 396-522 63-182 (386)
145 1mhq_A ADP-ribosylation factor 78.3 4.4 0.00015 33.7 6.2 71 397-467 39-115 (148)
146 1vsy_5 Proteasome activator BL 78.2 6.4 0.00022 43.9 9.4 186 186-382 134-364 (997)
147 3g2s_A C-terminal fragment of 78.1 4.8 0.00017 33.5 6.4 72 397-468 49-126 (149)
148 1mhq_A ADP-ribosylation factor 78.0 4.7 0.00016 33.6 6.3 74 99-172 38-116 (148)
149 3g2s_A C-terminal fragment of 77.2 5.2 0.00018 33.3 6.4 73 99-172 48-126 (149)
150 1juq_A ADP-ribosylation factor 77.2 6 0.00021 33.8 6.9 70 440-521 51-126 (171)
151 3zyq_A Hepatocyte growth facto 74.7 3.4 0.00012 37.2 5.0 74 99-172 45-118 (226)
152 3fga_B Serine/threonine-protei 73.2 45 0.0015 32.6 12.7 224 101-343 131-369 (403)
153 1juq_A ADP-ribosylation factor 71.9 6.4 0.00022 33.6 5.8 74 99-172 50-128 (171)
154 3zyq_A Hepatocyte growth facto 69.7 25 0.00085 31.5 9.5 92 408-521 24-116 (226)
155 1dvp_A HRS, hepatocyte growth 69.0 5.3 0.00018 35.8 4.9 74 99-172 42-115 (220)
156 1dvp_A HRS, hepatocyte growth 66.9 31 0.0011 30.6 9.6 70 440-521 43-113 (220)
157 1elk_A Target of MYB1; superhe 61.0 21 0.0007 29.9 6.7 74 99-172 53-130 (157)
158 2jak_A Serine/threonine-protei 60.5 54 0.0019 31.9 10.4 193 178-378 167-362 (392)
159 1vdy_A Hypothetical protein (R 58.3 21 0.00072 29.1 6.0 73 397-469 50-131 (140)
160 1vsy_5 Proteasome activator BL 56.1 55 0.0019 36.5 10.9 223 229-469 135-366 (997)
161 1elk_A Target of MYB1; superhe 55.3 26 0.0009 29.2 6.4 71 440-522 54-129 (157)
162 3gae_A Protein DOA1; UFD3, CDC 52.3 12 0.00043 34.1 4.2 107 108-219 99-222 (253)
163 3ut4_A CTHE_2751, putative unc 51.2 31 0.0011 27.9 5.8 94 397-523 32-130 (134)
164 2b6c_A Hypothetical protein EF 50.5 1.3E+02 0.0045 26.4 12.2 137 274-437 60-199 (220)
165 3vld_A DNA mismatch repair pro 49.0 2.2E+02 0.0074 28.5 13.8 145 99-258 73-226 (500)
166 3pst_A Protein DOA1; protein d 48.8 1.2E+02 0.0041 29.8 10.7 131 160-301 243-392 (425)
167 3pst_A Protein DOA1; protein d 48.4 23 0.00079 34.9 5.6 109 107-220 270-395 (425)
168 2jak_A Serine/threonine-protei 48.1 46 0.0016 32.4 7.6 72 101-174 176-247 (392)
169 3l3f_X Protein DOA1, DOA1/UFD3 47.8 42 0.0014 32.3 7.3 131 160-301 180-329 (362)
170 3gae_A Protein DOA1; UFD3, CDC 47.0 64 0.0022 29.3 8.1 107 194-300 99-219 (253)
171 3s4w_B Protein FACD2, fanconi 45.0 3.3E+02 0.011 31.2 14.8 211 198-423 323-547 (1323)
172 2b6c_A Hypothetical protein EF 42.6 1.7E+02 0.0059 25.6 10.2 99 280-394 101-199 (220)
173 3l3f_X Protein DOA1, DOA1/UFD3 42.2 30 0.001 33.3 5.3 109 107-220 207-332 (362)
174 3jxy_A Alkylpurine DNA glycosy 29.8 2.9E+02 0.0099 24.4 9.6 77 312-396 132-208 (232)
175 1wjt_A Transcription elongatio 27.6 79 0.0027 24.2 4.5 37 487-523 47-84 (103)
176 3jxy_A Alkylpurine DNA glycosy 27.5 1E+02 0.0035 27.4 6.1 138 274-438 66-207 (232)
177 3rru_A TOM1L1 protein; structu 27.2 2.3E+02 0.0078 23.3 7.7 72 440-523 54-130 (152)
178 1vsy_4 Proteasome activator BL 23.2 3.4E+02 0.011 29.3 10.0 115 177-297 332-454 (799)
179 3rru_A TOM1L1 protein; structu 21.7 1.1E+02 0.0038 25.2 4.7 71 397-467 54-129 (152)
180 2xpp_A IWS1, ECU08_0440; trans 21.6 3.3E+02 0.011 22.2 9.4 76 132-212 51-134 (145)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.2e-67 Score=557.99 Aligned_cols=481 Identities=42% Similarity=0.670 Sum_probs=405.8
Q ss_pred chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042204 46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125 (559)
Q Consensus 46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~ 125 (559)
|.+++|-+..=.+.-.||+||||+++|||++....++..++..............++.+++.++|+|++.++.|+..+|+
T Consensus 23 ~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~d~~~q~~a~~~~rk 102 (529)
T 3tpo_A 23 DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARK 102 (529)
T ss_dssp ---------------------CCSCSCCCCCC---------------CGGGSSCCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44556655553455589999999999999975433222111111111111112368999999999999999999999999
Q ss_pred hccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHH
Q 042204 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA 205 (559)
Q Consensus 126 lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a 205 (559)
++|.+.+++++.+++.|+||.|+++|+..+++.+|.+|+|+|+||+.++++++..+++.|++|.|+.+|.+++.+++++|
T Consensus 103 lLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A 182 (529)
T 3tpo_A 103 LLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 182 (529)
T ss_dssp HHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 99998899999999999999999999877769999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh----hHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhcc
Q 042204 206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA----KLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHS 280 (559)
Q Consensus 206 ~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~----~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~ 280 (559)
+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++++. +........+++|.|+.++.+
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~ 262 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 262 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999995332 3457899999999999987 566677778999999999999
Q ss_pred CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHH
Q 042204 281 NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV 360 (559)
Q Consensus 281 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~ 360 (559)
++++++.+++|+|++++...++..+.+++.|+++.|+.+|.+++..++.+|+++|+|++++++..+..+++.|+++.|+.
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~ 342 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 342 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q 042204 361 LLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKC 440 (559)
Q Consensus 361 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 440 (559)
+|.++ ++.++++|+|+|+||+++++.+.+.+++.|++|.|+.++.+++.+++++|+|+|+|++.+++++++.++++.|+
T Consensus 343 LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~ 421 (529)
T 3tpo_A 343 LLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421 (529)
T ss_dssp HTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHh
Q 042204 441 IKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILET 520 (559)
Q Consensus 441 l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~ 520 (559)
+++|+++|++.|++++..++++|.+|++.++... ..+.++.+|+++||+++|+.||+|+|.+||++|..||++
T Consensus 422 i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 422 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887642 567799999999999999999999999999999999999
Q ss_pred hcCCCCCCC-CCCCC
Q 042204 521 YWCGRVVGP-QPGPQ 534 (559)
Q Consensus 521 ~f~~~~~~~-~~~~~ 534 (559)
||+.+++++ .+.|.
T Consensus 495 yf~~~~~~~~~~~~~ 509 (529)
T 3tpo_A 495 YFSVEEEEDQNVVPE 509 (529)
T ss_dssp HC-------------
T ss_pred HCCCccccccccCCC
Confidence 999765544 45554
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.2e-63 Score=524.27 Aligned_cols=427 Identities=45% Similarity=0.765 Sum_probs=394.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.+|+.++|+|++.|+.|+..+|+++|.+.+|+++.+++.|+||.|+++|++.+++.+|++|+|+|+||++++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58999999999999999999999999999988999999999999999999998776699999999999999999999999
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh----hHhHHHHHHHHHHHh
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA----KLSMLRTATWTLSNF 255 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~----~~~~~~~a~~~L~nL 255 (559)
.+++.|++|.|+.+|.+++.+++++|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|+++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995332 345788999999999
Q ss_pred hcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204 256 CRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT 334 (559)
Q Consensus 256 ~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 334 (559)
+++. +........+++|.|+.++.+++++++..++|+|++|+...++..+.+.+.|+++.|+.+|.+++..++.+++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 566667778999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHH
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKN 414 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~ 414 (559)
|+|++++++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+||+++++++++.+++.|+++.|+.++.++++++++
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhc
Q 042204 415 WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAE 494 (559)
Q Consensus 415 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g 494 (559)
+|+|+|.|++.+++++++.++++.|++++|+++|+.+|++++..++++|.+|++.+++.. ..+.++.+|+++|
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g 449 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcC
Confidence 999999999999899999999999999999999999999999999999999999887642 5677999999999
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC-CCCCC
Q 042204 495 GLEKIENLQSHENNEIHEKSVKILETYWCGRVVGP-QPGPQ 534 (559)
Q Consensus 495 ~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~~-~~~~~ 534 (559)
|+++|+.||+|+|.+||++|..||++||+.+++++ .+.|.
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~ 490 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPE 490 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHCC------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCC
Confidence 99999999999999999999999999999766544 45553
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.7e-56 Score=475.34 Aligned_cols=480 Identities=71% Similarity=1.086 Sum_probs=402.4
Q ss_pred chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042204 46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125 (559)
Q Consensus 46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~ 125 (559)
+.++++.+..=.+.-.||+||||+++|||++....+..++. ............+|.+++.|.++++..+..|++.|++
T Consensus 23 ~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~A~~~L~~ 100 (528)
T 4b8j_A 23 DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA--SAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRK 100 (528)
T ss_dssp ----CCCCC-----------------CCCC------------------------CHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc--ccccchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555655554555689999999999999974322221100 0001111223568999999999999999999999999
Q ss_pred hccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHH
Q 042204 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA 205 (559)
Q Consensus 126 lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a 205 (559)
+++...++++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.+++.|
T Consensus 101 l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a 180 (528)
T 4b8j_A 101 LLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180 (528)
T ss_dssp HHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence 98887568899999999999999999987668999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhH
Q 042204 206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEV 285 (559)
Q Consensus 206 ~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v 285 (559)
+|+|+||+.+.+.+++.+...|++++|+.++..+.+..+++.++|+|++|+...+........+++|.|+.++.+.++.+
T Consensus 181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 260 (528)
T 4b8j_A 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV 260 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999998999999999999999999997777889999999999999998877777788999999999999999999
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 042204 286 LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365 (559)
Q Consensus 286 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~ 365 (559)
+..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+++.|+++.|+.+|.++
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 99999999999998888888999999999999999999999999999999999999999999999999999999999876
Q ss_pred CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC 445 (559)
Q Consensus 366 ~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 445 (559)
.++.++++|+|+|+|++.++++.++.+++.|+++.|+.+|.+++++++..|+|+|.|++..++++...++++.|+++.|+
T Consensus 341 ~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~ 420 (528)
T 4b8j_A 341 LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC 420 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCC
Q 042204 446 DLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGR 525 (559)
Q Consensus 446 ~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~ 525 (559)
.+|...+++++..++++|.+++..++....... ...++++..++++|++++|+.|++|+|++|+++|.+++++||+.+
T Consensus 421 ~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 421 DLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999988766432110 135679999999999999999999999999999999999999987
Q ss_pred CCCC
Q 042204 526 VVGP 529 (559)
Q Consensus 526 ~~~~ 529 (559)
++++
T Consensus 499 ~~~~ 502 (528)
T 4b8j_A 499 EDDT 502 (528)
T ss_dssp ----
T ss_pred cccc
Confidence 7665
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=9.6e-54 Score=455.62 Aligned_cols=479 Identities=49% Similarity=0.746 Sum_probs=415.4
Q ss_pred chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCC---CCCccCCCC--CCCchhh-hhHHHHHHHHHHhcCCCHHHHHHH
Q 042204 46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPP---SQQFLSFAP--APNLNLQ-TRLEIFAAMVAGVWSDDNNLQLEA 119 (559)
Q Consensus 46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~---~~~~~~~~~--~~~~~~~-~~~~~l~~lv~~L~s~~~~~~~~a 119 (559)
+.++.+.+-.-++.-.||+||++++.|||++... .+..+.... ......+ ...+.++.+++.|+++++..+..|
T Consensus 28 ~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~A 107 (530)
T 1wa5_B 28 SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSA 107 (530)
T ss_dssp ---CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHHSCSSHHHHHHH
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHHcCCCHHHHHHH
Confidence 4455666666677789999999999999998542 111000000 0001111 112468999999999999999999
Q ss_pred HHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCH
Q 042204 120 TTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPND 199 (559)
Q Consensus 120 ~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~ 199 (559)
+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++
T Consensus 108 ~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 187 (530)
T 1wa5_B 108 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187 (530)
T ss_dssp HHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 99999998876567888999999999999999997339999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhh
Q 042204 200 DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278 (559)
Q Consensus 200 ~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL 278 (559)
.+++.|+|+|++++.+.+..++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +........+++|.|+.++
T Consensus 188 ~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 266 (530)
T 1wa5_B 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH
Confidence 9999999999999999888999999999999999999 4578899999999999999987 6666777799999999999
Q ss_pred ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHH
Q 042204 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYL 358 (559)
Q Consensus 279 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L 358 (559)
.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|+++.|
T Consensus 267 ~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 346 (530)
T 1wa5_B 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL 346 (530)
T ss_dssp TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHH
Confidence 99999999999999999998888888889999999999999999999999999999999999998888889999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCH--HHHHHHH
Q 042204 359 LVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLV 436 (559)
Q Consensus 359 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~ 436 (559)
+.+|.++ ++.+++.|+|+|+|++.++++.++.+++.|+++.|+.+|.+++++++..|+|+|.+++..+++ +...+++
T Consensus 347 ~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~ 425 (530)
T 1wa5_B 347 RLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV 425 (530)
T ss_dssp HHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999 999999999999999998899999999999999999999999999999999999999987766 8888999
Q ss_pred HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 042204 437 REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVK 516 (559)
Q Consensus 437 ~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~ 516 (559)
+.|+++.|+.++...++.++..++++|.+++..++...... ....++++..++++||+++|+.|++|++++|+++|..
T Consensus 426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~ 503 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503 (530)
T ss_dssp HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999998876532100 0134678999999999999999999999999999999
Q ss_pred HHHhhcCCCCCC
Q 042204 517 ILETYWCGRVVG 528 (559)
Q Consensus 517 il~~~f~~~~~~ 528 (559)
+|++||..++++
T Consensus 504 il~~~~~~~~~~ 515 (530)
T 1wa5_B 504 IIETYFGEEEDA 515 (530)
T ss_dssp HHHHHSSSCC--
T ss_pred HHHHHCCccccc
Confidence 999999987764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.1e-47 Score=398.44 Aligned_cols=427 Identities=57% Similarity=0.900 Sum_probs=386.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.++.+++.++++++..+..|+..|+++++...+++...+++. |++|.|+++|++++++.+|..|+++|++++.++++.+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 478999999999999999999999999875446677888888 9999999999998349999999999999999888999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998888999999999999999996557889999999999999987
Q ss_pred C-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 259 M-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 259 ~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
. +........+++|.|+.++.++++.++..++|+|++++...++..+.+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555556668999999999999999999999999999998877777888899999999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~ 417 (559)
++.+.+...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999988888889999999999999998 999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204 418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE 497 (559)
Q Consensus 418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 497 (559)
|+|+|++..++++...++++.|+++.|+.++...+++++..++++|.+++..++...... ....++++..+.++||++
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~ 417 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGLD 417 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc--ccchhHHHHHHHHcCcHH
Confidence 999999987778888989999999999999999999999999999999998776532110 013457899999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 042204 498 KIENLQSHENNEIHEKSVKILETYWCGRVVGP 529 (559)
Q Consensus 498 ~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~~ 529 (559)
+|..|++|++.+|+++|..+|++||+.+++++
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999998776654
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.1e-41 Score=345.11 Aligned_cols=366 Identities=18% Similarity=0.187 Sum_probs=296.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCc-hHHHHHhcCcHHHHHHhhcCCCC-----------HHHHHHH
Q 042204 96 TRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSP-PIEEVIQSGVVPRFVEFLMREDY-----------PQLQYEA 163 (559)
Q Consensus 96 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~-~~~~ii~~g~v~~Lv~lL~~~~~-----------~~~~~~a 163 (559)
..++.++.++..+.+.|.+. .++++++.+.++ .+..+++.|++|.|+++|...+. ++++++|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 44567899999999888773 344444433344 45889999999999999997543 7999999
Q ss_pred HHHHHHHhcCCchhHHHHHhCCCH----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHHhCCCchh
Q 042204 164 AWALTNIASKTSEDTKVVIDHGAV----------PIFVKLLASPN--DD-----IRE-------QAVWALGNVAGDSPRC 219 (559)
Q Consensus 164 ~~~L~nl~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~ 219 (559)
+|+|+||+.++++.++...+.|++ +.+++++.++. .+ +++ +|+|+|+|++.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999999999988 77777787642 22 555 999999999776 889
Q ss_pred hhhhhccCCHHHHHHHhch----------hhhHhHHHHHHHHHHHhhcCCCCCcHhh--HhchHHHHHHhhccCCHhHHH
Q 042204 220 RDLVLSEEALIPLLAQLNE----------HAKLSMLRTATWTLSNFCRGMPRPIFEQ--VRPALPVLAQLVHSNDKEVLT 287 (559)
Q Consensus 220 r~~i~~~g~l~~Ll~ll~~----------~~~~~~~~~a~~~L~nL~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~ 287 (559)
|+.+.+.|++++|+.+|.. ..++.+++.|+|+|.||+.+.+...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2457789999999999999874333333 356799999999999999999
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcCChHHHHHHH-hCCChHHHHHHhcC
Q 042204 288 DACWALYFLSNG-KNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTIGHIVAGDDFQTQCII-NCGALPYLLVLLIH 364 (559)
Q Consensus 288 ~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~g~l~~L~~lL~~ 364 (559)
.|+|+|+||+.. +++..+.+.+.|+++.|+++| .+.+..++..|+++|+||+.+++.....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999975 566778899999999999975 556778999999999999995544444454 78999999999987
Q ss_pred CCch----hHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 365 SHKK----SIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR 437 (559)
Q Consensus 365 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 437 (559)
. +. .+++.|+|+|.|++. +++++++.+++.|+++.|+.+|.+++.+++++|+|+|.|++.. ++++...+++
T Consensus 342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~ 419 (458)
T 3nmz_A 342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD 419 (458)
T ss_dssp C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 7 43 499999999999996 7899999999999999999999999999999999999999975 7889999999
Q ss_pred cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
.|++++|+++|.+.++.++..++++|.+++...
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999643
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.8e-41 Score=360.07 Aligned_cols=368 Identities=15% Similarity=0.146 Sum_probs=321.0
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204 99 EIFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS 175 (559)
Q Consensus 99 ~~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~ 175 (559)
..++.+++.|.++ |.+.+..|++.|..+ +.. .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+++
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayL-S~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYL-TLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence 3578899999988 889999999999997 433 45555555 6899999999999988 8999999999999998653
Q ss_pred h-----------------------------hH---HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204 176 E-----------------------------DT---KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223 (559)
Q Consensus 176 ~-----------------------------~~---~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 223 (559)
+ .+ +.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|+.+
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 1 22 7889999999999999999999999999999999976 5589999
Q ss_pred hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcH--hhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccC
Q 042204 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIF--EQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNG 299 (559)
Q Consensus 224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~--~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~ 299 (559)
.+.|++++|+.++ .+.+...++.|+|+|++|+... |...+ ....+++|.|+.+|.++ +...+..|+|+|+||+..
T Consensus 533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999 5556788999999999999764 22111 12356899999999865 344567899999999998
Q ss_pred ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204 300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS 379 (559)
Q Consensus 300 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~ 379 (559)
+++..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+.+.+...|.++.|+.++.++ +..+|++|+|+|+
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa 690 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALA 690 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999998776655442379999999999998 9999999999999
Q ss_pred HhhcCCHHHHHHHHH-cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC---ChHH
Q 042204 380 KITAGNREQIQAVID-AGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA---NPTI 455 (559)
Q Consensus 380 nl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---d~~v 455 (559)
|++.+++.+++.+++ .|+++.|+++|.+++.++++.|+|+|.|++.+ ++++..++++.|++++|+.+++.. ++++
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i 769 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence 999988999999998 89999999999999999999999999999985 678899999999999999999655 7899
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 042204 456 VTVCLKGLENILKVGEAE 473 (559)
Q Consensus 456 ~~~~l~~l~~il~~~~~~ 473 (559)
++.++++|.++++.+...
T Consensus 770 ~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 770 REVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 999999999999887653
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.3e-40 Score=342.21 Aligned_cols=365 Identities=19% Similarity=0.211 Sum_probs=311.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 222 (559)
.+|.|+++|++++ +++|..|+++|.+++.+++..+..+++.|++|.|+.+|+++++.+++.|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 899999999999999878888889999999999999999999999999999999999988889999
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc--------c--------CCHhHH
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH--------S--------NDKEVL 286 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~d~~v~ 286 (559)
+.+.|++++|+.+|..+.+.++++.++|+|+||+... ........+++|.|+.++. + .++.++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999964778899999999999999984 4444333499999999993 2 356778
Q ss_pred HHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcC------------------
Q 042204 287 TDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAG------------------ 341 (559)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~------------------ 341 (559)
..|+|+|+||+.. ++..+.+.+. |+++.|+.+|.+ .+..++..|+.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999976 6777888887 999999999985 4667888999999998631
Q ss_pred --------------------------------ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH--
Q 042204 342 --------------------------------DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-- 387 (559)
Q Consensus 342 --------------------------------~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 387 (559)
.+...+.+++.|+++.|+.+|.+..++.+++.|+|+|+|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1112334566788999999998765789999999999999986432
Q ss_pred -HH-HHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh------HHHHH
Q 042204 388 -QI-QAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP------TIVTV 458 (559)
Q Consensus 388 -~~-~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~------~v~~~ 458 (559)
.+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.+ .....++..|++++|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 33 4455 689999999999999999999999999999985 244566777899999999987653 68889
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHhhcCCCC
Q 042204 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE-NNEIHEKSVKILETYWCGRV 526 (559)
Q Consensus 459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~f~~~~ 526 (559)
++++|.+++..+ ..++..+.++||+++|.+|+.|. ++++|++|.++|++||...+
T Consensus 397 ~l~~l~ni~~~~-------------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQ-------------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTC-------------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcC-------------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 999999998432 34688899999999999999999 99999999999999998665
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=8.3e-39 Score=339.55 Aligned_cols=368 Identities=26% Similarity=0.389 Sum_probs=327.1
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 98 LEIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 98 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.|.+|.|++.|.. +++.+|..|+++|.++.++. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 4789999999974 56899999999999988764 567788999999999999999999 99999999999999998899
Q ss_pred hHHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLASPN-----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT 251 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~ 251 (559)
.+..+++.|+++.|+.+|..++ ..+.+.++|+|++++.............++++.|+.++ .+.+..++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999998644 45788999999999987655555555567889999998 67788999999999
Q ss_pred HHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh
Q 042204 252 LSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP 330 (559)
Q Consensus 252 L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~ 330 (559)
|++++.+.+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 999998763322 2334789999999999999999999999999999989888889999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCC
Q 042204 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAE 409 (559)
Q Consensus 331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~ 409 (559)
|+|+|+|++.++..+.+.+++.|+++.|+.+|.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|...|
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999987 68899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcC----CCHH-HHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 410 INIKNWAAWAISNATSG----GSHE-QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~----~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
++++..++++|.|+... +..+ ....+.+.|+++.|..|..+++.++...|..+|.+++..
T Consensus 434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999752 2333 344566789999999999999999999999999998854
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.2e-39 Score=339.87 Aligned_cols=369 Identities=26% Similarity=0.384 Sum_probs=326.6
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 98 LEIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 98 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.|.+|.|++.|++ +++.+|+.|+++|.++.++. .+....+++.|++|.|+++|++++ ++++..|+|+|+||+.++++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 3789999999975 55899999999999998764 677889999999999999999998 99999999999999998899
Q ss_pred hHHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLASPN-----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT 251 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~ 251 (559)
.+..+++.|+++.|+.+|.+++ ..+.+.++|+|+|++.............++++.|+.++ .+.+.+++..++|+
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence 9999999999999999998754 45678999999999987655455555567889999998 67788999999999
Q ss_pred HHHhhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh
Q 042204 252 LSNFCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP 330 (559)
Q Consensus 252 L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~ 330 (559)
|++|+...+.... ....+++|.|+.++.+.+..++..++++|++++..++...+.+++.|+++.|+.+|.+++..++..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 9999987533222 234789999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCC
Q 042204 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAE 409 (559)
Q Consensus 331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~ 409 (559)
|+|+|+|++.++..+.+.+++.|+++.|+.+|.+. +..+|++|+|+|+|++. ++.+++..+++.|+++.|+++|...|
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999997 68899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcC----CCHH-HHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 410 INIKNWAAWAISNATSG----GSHE-QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~----~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
++++..++++|.|+... +..+ ....+.+.|+++.|..+..+++.++...+...|.+++..+
T Consensus 415 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999752 2233 3445567899999999999999999999999999988543
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.2e-37 Score=331.60 Aligned_cols=402 Identities=16% Similarity=0.167 Sum_probs=341.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.+|.+++.|+++++..+..|++.|.++.... ......+.+.|++|.|+++|++++ ++++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999987763 566778889999999999999988 8999999999999999889999
Q ss_pred HHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 179 KVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
..+++.|+++.|+.+|.+. ....+..++.+|.+++. .+..+..+.+.|++++|+.++ .+.+..+++.++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999864 45677788999999986 456788888999999999999 55578899999999999998
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTI 335 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L 335 (559)
..+.. ....+++|.|+.++.+++++++..++|+|++++..+++..+.+.+.|+++.|+++|.+. ++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 23468999999999999999999999999999988887888999999999999999763 368999999999
Q ss_pred HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhH
Q 042204 336 GHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINI 412 (559)
Q Consensus 336 ~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v 412 (559)
+|++.+++. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++. ..+.+++.|+++.|++++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999986532 345788899999999999988346999999999999987644 4478889999999999999988999
Q ss_pred HHHHHHHHHH--HhcCC------------------CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 413 KNWAAWAISN--ATSGG------------------SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 413 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
|++|+|++.| +..++ .++....+.+.|+++.|+.++.+.++.++..+.++|.++..
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~---- 489 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ---- 489 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT----
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc----
Confidence 9988888777 22221 34555678899999999999999999999999999999762
Q ss_pred hcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 473 EKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
.++++..+.+.|+++.|+.|++|+|++|+++|.++++++
T Consensus 490 ----------~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 490 ----------DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ----------SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 234688899999999999999999999999999999864
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=336.21 Aligned_cols=405 Identities=17% Similarity=0.172 Sum_probs=347.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.++.+++.|+++++..+..|++.|.++.+.. ......+++.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 68999999999999999999999999987764 567788889999999999999988 8999999999999998889999
Q ss_pred HHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 179 KVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
..+++.|+++.|+.+|.+. ...++..++.+|.|++. .+..|..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999875 46788899999999986 456788899999999999999 45578999999999999998
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC--CcchhhHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS--SSVLSPALQTI 335 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L 335 (559)
..+.. ....+++|.|+.++.+.+++++..++|+|++|+..+++..+.+.+.|+++.|+.+|.+.+ +.++..|+++|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 76332 334689999999999999999999999999999888888888999999999999998743 68999999999
Q ss_pred HHhhcCCh--HHH-HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhH
Q 042204 336 GHIVAGDD--FQT-QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINI 412 (559)
Q Consensus 336 ~nl~~~~~--~~~-~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v 412 (559)
+|++.... ... ..+++.|+++.|+.+|.++.++.++++|+|+|+|++.+... .+.+++.|+++.|+++|.++++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 99997543 233 34778899999999999873479999999999999876444 488889999999999998765555
Q ss_pred HH----------------------HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 413 KN----------------------WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 413 ~~----------------------~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
|+ .++.+|.+++. ++.....+.+.|+++.|+.+|.+.++.++..++++|.++...
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~- 487 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 487 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 54 45555555554 335556778999999999999999999999999999998732
Q ss_pred hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHhhcCCCC
Q 042204 471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEI------------------HEK--SVKILETYWCGRV 526 (559)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v------------------~~~--a~~il~~~f~~~~ 526 (559)
++++..++++|+++.|..|++++|++| |++ +..+++.||..++
T Consensus 488 -------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 488 -------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred -------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 336888999999999999999999999 544 6778999998764
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.3e-38 Score=329.28 Aligned_cols=361 Identities=16% Similarity=0.165 Sum_probs=305.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+|.+++.|++++++.|..|++.|+++... +.+....+++.|++|.|+++|++++ +.++..|+|+|+||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 478999999999999999999999997654 2455668999999999999999988 99999999999999998899999
Q ss_pred HHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch--------h-------hhHh
Q 042204 180 VVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE--------H-------AKLS 243 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~--------~-------~~~~ 243 (559)
.+++.|++|.|+++|. ++++++++.|+|+|+|++.+ +..|..+.+ |++++|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999988 678888888 999999999931 1 2467
Q ss_pred HHHHHHHHHHHhhcCCCCCcHhhH-h-chHHHHHHhhcc------CCHhHHHHHHHHHHHhccCC---------------
Q 042204 244 MLRTATWTLSNFCRGMPRPIFEQV-R-PALPVLAQLVHS------NDKEVLTDACWALYFLSNGK--------------- 300 (559)
Q Consensus 244 ~~~~a~~~L~nL~~~~~~~~~~~~-~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~--------------- 300 (559)
++++++|+|+||+.+ +....... . |++|.|+.++++ .+..++.+++++|.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 788999999999987 33333333 3 899999999985 46678899999999987321
Q ss_pred -----------------------------------hhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChH
Q 042204 301 -----------------------------------NDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 301 -----------------------------------~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~ 344 (559)
+...+.+++.|+++.|+.+|.+. ++.+++.|+|+|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 11223455667889999999764 578999999999999987654
Q ss_pred H---H-HHHH-hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCCh------hHH
Q 042204 345 Q---T-QCII-NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI------NIK 413 (559)
Q Consensus 345 ~---~-~~~~-~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~------~v~ 413 (559)
. . +.++ +.|+++.|+.+|.++ +..++++|+|+|+|++.+ ...+.++..++++.|+++|..+++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 2 2 3334 689999999999999 999999999999999875 345677777899999999998743 688
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHh
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKV 469 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~ 469 (559)
..++++|.|+..+ ++++...+.+.|+++.|++++.+. +.+++..|.+.|.+++..
T Consensus 395 ~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 8999999999976 567888889999999999999998 899999999999998743
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-36 Score=324.15 Aligned_cols=405 Identities=16% Similarity=0.141 Sum_probs=336.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-hh
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS-ED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~ 177 (559)
+.++.++..+.+++...+..|++.+.++.+. ...++.+++.|+ |.|+.++++++ +.+|..|+++|++++.... +.
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d~ 365 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDA 365 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTTT
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccCc
Confidence 7899999999999999999999999997554 678889999886 99999999887 8999999999999986321 22
Q ss_pred HHHHHhCCC----HHHHHHhhCCC--CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204 178 TKVVIDHGA----VPIFVKLLASP--NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT 251 (559)
Q Consensus 178 ~~~i~~~g~----i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~ 251 (559)
....++.|. ++.|+++|.++ ++++++.|+|+|.+++.+.......+.+.|+++.|+.++ .+.+..++..++|+
T Consensus 366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~ 444 (810)
T 3now_A 366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTT 444 (810)
T ss_dssp SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHH
T ss_pred cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHH
Confidence 223333343 66788888887 899999999999999877655455555789999999999 56788999999999
Q ss_pred HHHhhcCCCCC---------------------------------cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 252 LSNFCRGMPRP---------------------------------IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 252 L~nL~~~~~~~---------------------------------~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
|.||+.+.+.. ......|++|.|+.++.++++.++..|+|+|+|++.
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~ 524 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG 524 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 99999864211 122236899999999999999999999999999994
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHH--HHhCCChHHHHHHhcCCCchhHHHHHHH
Q 042204 299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQC--IINCGALPYLLVLLIHSHKKSIKNHACW 376 (559)
Q Consensus 299 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~--~~~~g~l~~L~~lL~~~~~~~v~~~a~~ 376 (559)
+++....+++.|+++.|+.+|.++++..+..|+|+|+|++.+.+..... ....+++++|+.+|.++.+...+.+|+|
T Consensus 525 -d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 525 -LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5667788999999999999999999999999999999998754322100 0113689999999986523345679999
Q ss_pred HHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChHH
Q 042204 377 TISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPTI 455 (559)
Q Consensus 377 ~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v 455 (559)
+|+|++.++++..+.+++.|+++.|+.+|.++++.+++.|+++|+|++.+ ++....+++ .|.++.|+.++.+.+..+
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence 99999998888999999999999999999999999999999999999984 456666665 689999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH-hccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 456 VTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE-AEGLEKIENLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 456 ~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~-~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
+..+.++|.++....+. ..+.+.+ .|+++.|..|..+++.++++.|.+++.+....
T Consensus 682 q~~Aa~ALanLt~~s~~-------------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 682 ATACAGALAIITSVSVK-------------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHCHH-------------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHH-------------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999998853221 2344444 89999999999999999999999999988653
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.5e-36 Score=314.59 Aligned_cols=366 Identities=25% Similarity=0.319 Sum_probs=324.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.++.+++.|+++ ++..+..|++.|.++.+.. .+....+++.|++|.|+++|++++ +.++..|+|+|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 5799999999998 8999999999999987753 456777889999999999999988 999999999999999988889
Q ss_pred HHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204 178 TKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL 255 (559)
+..+++.|+++.|+.++.+ .+..++..|+|+|++++... +..+..+. .++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 44333333 78899999999 566789999999999999
Q ss_pred hcCCCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204 256 CRGMPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT 334 (559)
Q Consensus 256 ~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 334 (559)
+...+. .......+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 987532 2223346899999999999999999999999999998888887888999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
|++++.+++...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.+ +++.++.+++.|+++.|++++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888899999999999999998 999999999999999974 78889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 414 NWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++.+++..++.+|.+++..
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999975332 2345677889999999999999999999999999999843
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=7.1e-36 Score=317.77 Aligned_cols=369 Identities=25% Similarity=0.336 Sum_probs=327.6
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.+|.+++.|.++ ++.++..|++.|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6799999999997 8999999999999987653 556788889999999999999888 999999999999999988899
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+..++..|+++.|+.++.+.++.++..|+|+|++++.............++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999976522234455678999999999 56678999999999999998
Q ss_pred CCCCCcHh-hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204 258 GMPRPIFE-QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336 (559)
Q Consensus 258 ~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~ 336 (559)
..+..... ...+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 75322222 23589999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCH--HHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNR--EQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
+++.++....+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++. +++ +..+.+++.|+++.|+.++.+++++++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998888888889999999999999988 99999999999999987 455 788899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 414 NWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999875322 245667889999999999999999999999999999886543
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.7e-36 Score=316.49 Aligned_cols=363 Identities=17% Similarity=0.153 Sum_probs=302.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Cchh
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK-TSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~ 177 (559)
..++.+|+.|.+++++.|..|++.|+++.... .+++..+++.|+||.|+++|++++ +.+|+.|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 36899999999999999999999999986543 778999999999999999999988 99999999999999996 6899
Q ss_pred HHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-----------------hh
Q 042204 178 TKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-----------------EH 239 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-----------------~~ 239 (559)
+..+++.|+||.|+.+|.+ .+.+++++++++|+|++.. +..+..+.+ +++++|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6889999999999999974 566777775 57999999872 11
Q ss_pred hhHhHHHHHHHHHHHhhcCCCCCcHhhH--hchHHHHHHhhcc------CCHhHHHHHHHHHHHhccCChh---------
Q 042204 240 AKLSMLRTATWTLSNFCRGMPRPIFEQV--RPALPVLAQLVHS------NDKEVLTDACWALYFLSNGKND--------- 302 (559)
Q Consensus 240 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~--~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~~~--------- 302 (559)
.+..++++++|+|.||+...+.....+. .++++.|+.++++ .+...+++|+|+|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2468999999999999987643233332 5778899999874 4678999999999999965211
Q ss_pred ----------------HHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHH----HHHHHhCCChHHHHHH
Q 042204 303 ----------------KIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQ----TQCIINCGALPYLLVL 361 (559)
Q Consensus 303 ----------------~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~----~~~~~~~g~l~~L~~l 361 (559)
.++.+.+.++++.|+.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1112233456788899996 457889999999999999876322 2234456899999999
Q ss_pred hcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--------ChhHHHHHHHHHHHHhcCCCHHHHH
Q 042204 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--------EINIKNWAAWAISNATSGGSHEQIK 433 (559)
Q Consensus 362 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 433 (559)
|.++ +..+++.|+|+|+|++.+.. .+.++..|+++.|+.+|.++ ..+++..|+++|.|++.. ++++..
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 99999999999999997543 34566788999999999876 357899999999999976 789999
Q ss_pred HHHHcCChHHHHhcCCCC--ChHHHHHHHHHHHHHHHh
Q 042204 434 YLVREKCIKPLCDLLPCA--NPTIVTVCLKGLENILKV 469 (559)
Q Consensus 434 ~l~~~~~l~~L~~lL~~~--d~~v~~~~l~~l~~il~~ 469 (559)
.+.+.|+++.|+.++.+. .+.+++.|.++|.++...
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 999999999999999876 789999999999998843
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.8e-36 Score=317.92 Aligned_cols=367 Identities=26% Similarity=0.348 Sum_probs=328.1
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.+|.+++.|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++|+..++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 67999999999887 999999999999987653 567888899999999999999988 999999999999999988889
Q ss_pred HHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204 178 TKVVIDHGAVPIFVKLL-ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~ 256 (559)
+..+++.|+++.|+.+| .+.++.++..|+|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6789999999999999999876543 3344578999999999 6678899999999999999
Q ss_pred cCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHH
Q 042204 257 RGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQT 334 (559)
Q Consensus 257 ~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~ 334 (559)
.+.+... .....+++|.|+.+|.+.++.++..|+++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7753222 233468999999999999999999999999999998888888899999999999999998 89999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
|+|++.+++...+.+++.|+++.|+.+|.+. ++.++.+|+|+|+|++.+ +++....+++.|+++.|+.+|..++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888899999999999999998 999999999999999984 78999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 414 NWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
..++++|.+++..+.. .....+.+.|+++.|..+..+.++++...+..++.+++...
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999875322 24667778999999999999999999999999999988543
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-35 Score=310.43 Aligned_cols=368 Identities=18% Similarity=0.223 Sum_probs=305.3
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC-Cch
Q 042204 140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD-SPR 218 (559)
Q Consensus 140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~ 218 (559)
..+.+|.|+++|.+++ +++|..|+++|.+++.++++++..+++.|+||.|+.+|.++++++++.|+|+|.||+.. ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4678999999999988 99999999999999998999999999999999999999999999999999999999985 688
Q ss_pred hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc------------------c
Q 042204 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH------------------S 280 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~------------------~ 280 (559)
++..+.+.|++++|+.+|....+..+++.++++|+||+... ........+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 89999999999999999965567889999999999999854 4444455778999999871 2
Q ss_pred CCHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChHH--------
Q 042204 281 NDKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAGDDFQ-------- 345 (559)
Q Consensus 281 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~~-------- 345 (559)
.++.++.+|.++|.||+..+++..+.+.+. |+++.|+.+|.+ .+...++.|+++|.|++......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 368999999999999998777766777775 777899999864 45678899999999999752211
Q ss_pred -----------------HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCH---HHHHHHH-HcCCHHHHHHH
Q 042204 346 -----------------TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNR---EQIQAVI-DAGLIGPLINL 404 (559)
Q Consensus 346 -----------------~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~li-~~~~i~~Li~l 404 (559)
...+.+.++++.|+.+|.+..++.+++.|+|+|.|++++.. ..++..+ +.+++|.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 11122335567889999654389999999999999998652 2334444 56789999999
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC--------ChHHHHHHHHHHHHHHHhhhhhccc
Q 042204 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA--------NPTIVTVCLKGLENILKVGEAEKNM 476 (559)
Q Consensus 405 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------d~~v~~~~l~~l~~il~~~~~~~~~ 476 (559)
|.+++.++++.|+|+|.||+.+.. . ..++..|+++.|+.+|.+. ..+++..++++|.|++...
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~------ 434 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN------ 434 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC------
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC------
Confidence 999999999999999999998643 2 2345789999999999775 3578889999999998432
Q ss_pred ccccCcchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHhhcCCC
Q 042204 477 DTAIGDVNQYAQLVEEAEGLEKIENLQSHE--NNEIHEKSVKILETYWCGR 525 (559)
Q Consensus 477 ~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~f~~~ 525 (559)
......+.+.|+++.|..|..+. .+.+.+.|.+++..+|...
T Consensus 435 -------~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 435 -------LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp -------HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred -------HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 23477788999999999998875 8999999999999887644
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.6e-34 Score=319.20 Aligned_cols=405 Identities=17% Similarity=0.169 Sum_probs=341.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.++.|++.|+++++.++..|+++|.++.+.. ......+.+.|+++.|+++|.+++ +.++..|+.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 68999999999999999999999999987753 566777778999999999999987 8999999999999999889999
Q ss_pred HHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 179 KVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
..+++.|+++.|+.+|++.+ ...++.++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998755 45667889999999964 55688888999999999999 55577899999999999998
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CC-cchhhHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SS-SVLSPALQTI 335 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~-~v~~~al~~L 335 (559)
..+. .....+++|.|+.++.+.++.++..|+|+|++|+..+++..+.+++.|+++.|+.+|.+. +. .++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 223468999999999999999999999999999988888888899999999999999873 33 8999999999
Q ss_pred HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChh-
Q 042204 336 GHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEIN- 411 (559)
Q Consensus 336 ~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~- 411 (559)
+||+..+.. ....+.+.++++.|+.+|.++..+.++++|+|+|+|++.+ +.....+.+.|+++.|+++|.+++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999875543 2346788899999999999883459999999999999876 44457888999999999999875544
Q ss_pred ---------------------HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 412 ---------------------IKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 412 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
++..++.+|.+++. +++....+.+.|+++.|+.+|.+.++.++..++.+|.++..
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-- 622 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-- 622 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT--
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--
Confidence 45566667777765 45666778899999999999999999999999999999862
Q ss_pred hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHH--------------------HHHHHHhhcCCCC
Q 042204 471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK--------------------SVKILETYWCGRV 526 (559)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~--------------------a~~il~~~f~~~~ 526 (559)
.++++..|.+.|+++.|.+|+++++++|++. +..++..||..++
T Consensus 623 ------------~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 623 ------------DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686 (780)
T ss_dssp ------------SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred ------------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence 2336888999999999999999999999654 5567777776553
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=295.42 Aligned_cols=327 Identities=16% Similarity=0.160 Sum_probs=277.5
Q ss_pred hHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcH----------HHHHHhhcCC
Q 042204 97 RLEIFAAMVAGVWSD------------DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVV----------PRFVEFLMRE 154 (559)
Q Consensus 97 ~~~~l~~lv~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v----------~~Lv~lL~~~ 154 (559)
+.|.+|.+++.|+.. +++.+++|+++|.+++++. ++..+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 347899999999963 3799999999999999986 6677777788888 7777888764
Q ss_pred C-CHH-----HHH-------HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 042204 155 D-YPQ-----LQY-------EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-----------PNDDIREQAVWALG 210 (559)
Q Consensus 155 ~-~~~-----~~~-------~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~ 210 (559)
. ..+ +++ +|+|+|.|++. ++++|+.+++.|++++|+.+|.. .++.+++.|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 012 444 99999999987 69999999999999999999942 34778999999999
Q ss_pred HHhCCCchhhhhhh-ccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-C-CCcHhhHhchHHHHHHhh-ccCCHhHH
Q 042204 211 NVAGDSPRCRDLVL-SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-P-RPIFEQVRPALPVLAQLV-HSNDKEVL 286 (559)
Q Consensus 211 nl~~~~~~~r~~i~-~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~-~~~~~~~~~~l~~L~~lL-~~~d~~v~ 286 (559)
|++.+++..+..+. ..|++++|+.+| .+.+.+++..++|+|.||+... + ........|++|.|+.+| .+.++.++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 99988877776665 456699999999 5678899999999999999853 2 222333479999999975 56789999
Q ss_pred HHHHHHHHHhccCChhHHHHHH-HhCcHHHHHHhhCCCCCc----chhhHHHHHHHhhc---CChHHHHHHHhCCChHHH
Q 042204 287 TDACWALYFLSNGKNDKIQAVI-EAGVCPRLVELLGHRSSS----VLSPALQTIGHIVA---GDDFQTQCIINCGALPYL 358 (559)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~~~~g~l~~L 358 (559)
..++.+|++|+...++....+. ..|+++.|+.+|.+.+.. ++..|+++|.|++. +++...+.+++.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999974544445555 789999999999987654 89999999999997 788888899999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 359 LVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 359 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
+.+|.++ +..++++|+|+|+|++.+++++++.+++.|+++.|+++|.+++.++++.|+|+|.|++.+.
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999998 9999999999999999889999999999999999999999999999999999999999863
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.5e-34 Score=302.73 Aligned_cols=413 Identities=15% Similarity=0.127 Sum_probs=338.1
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.++.+++.|.+ ++++.+..|+..|+++... .+++..+.+.|++|.|+++|++++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 578999999975 4899999999999997543 568888999999999999999988 999999999999999977788
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+..+++.|++|.|+.+|.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999998888889999999999999999666566777789999999997
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
...........++++.|+.++.+.++.++..++|+|.+++...+... ...++++.|+++|.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64333334447899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHH---HHHHHHHcCCHHHHHHHhhcCC-hhH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNRE---QIQAVIDAGLIGPLINLLQNAE-INI 412 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~li~~~~i~~Li~lL~~~~-~~v 412 (559)
++.+++...+.+.+.|+++.|+.+|.+. .++.++..|+++|+|++.++++ ....+.+.|+++.|+++|.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888888899999999999999763 1479999999999999875432 4567889999999999999876 599
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH--HHhhh----------hhccccccc
Q 042204 413 KNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI--LKVGE----------AEKNMDTAI 480 (559)
Q Consensus 413 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i--l~~~~----------~~~~~~~~~ 480 (559)
++.++|+|.|++.+ ++....+.+.|+++.|+.++.+.+++++..+.|++.+. ...+. .....
T Consensus 373 ~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L---- 446 (529)
T 1jdh_A 373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL---- 446 (529)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH----
Confidence 99999999999985 33446788999999999999887777777666665551 00000 00000
Q ss_pred CcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 481 GDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 481 ~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
......+..+.+.|+++.|..+..++++++++.|.+.+.++..
T Consensus 447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 0111245668889999999999999999999999999988653
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=299.57 Aligned_cols=403 Identities=16% Similarity=0.151 Sum_probs=341.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.++.+++.|.++ +++.+..|+..|+++... .+.+..+.+.|++|.|+++|++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 5789999999865 899999999999986443 558888999999999999999988 999999999999999977788
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999998889999999987788888999999999999999766667788899999999997
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444445789999999999999999999999999999654432 1123689999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCC--HHHHH-HHHHcCCHHHHHHHhhcCC-hhH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITAGN--REQIQ-AVIDAGLIGPLINLLQNAE-INI 412 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~--~~~~~-~li~~~~i~~Li~lL~~~~-~~v 412 (559)
++..++...+.+.+.|+++.|+.+|.+.. .+.++..|+++|+|++..+ .+..+ .+++.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 99988888888999999999999998642 3799999999999998743 23334 4778999999999999875 699
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 042204 413 KNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN----------------------PTIVTVCLKGLENILKVG 470 (559)
Q Consensus 413 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~~l~~l~~il~~~ 470 (559)
++.|+|+|.|++.+. +....+.+.|+++.|+.+|.+.+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 34477889999999999987643 355666777777666321
Q ss_pred hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
..+..+.+.|+++.|..+..+.++++++.|..++.++..
T Consensus 448 --------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp --------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 245678889999999999999999999999998877654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.1e-32 Score=302.19 Aligned_cols=402 Identities=15% Similarity=0.157 Sum_probs=339.0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
+.++.|++.|.++ ++..+..|+..|+++... ..++..+.+.|++|.|+++|++++ +.++..|+++|.+|+...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 5788999999854 899999999999996443 566888889999999999999988 999999999999999977888
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+..+++.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.++++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999987788888888999999999999666556677788999999997
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5433333445789999999999999999999999999999665432 1124689999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCc-hhHHHHHHHHHHHhhcCCHH---HHHHHHHcCCHHHHHHHhhcCCh-hH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHK-KSIKNHACWTISKITAGNRE---QIQAVIDAGLIGPLINLLQNAEI-NI 412 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~li~~~~i~~Li~lL~~~~~-~v 412 (559)
|+.+++...+.+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+.+.++++.|+++|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999988888889999999999999976313 48999999999999874333 23467789999999999998765 99
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 042204 413 KNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN----------------------PTIVTVCLKGLENILKVG 470 (559)
Q Consensus 413 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~~l~~l~~il~~~ 470 (559)
++.|+|+|.|++.+ ++....+.+.|+++.|+.+|.+.+ .+++..++.+|.++...
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~- 582 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD- 582 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-
Confidence 99999999999974 455578889999999999986543 34566677777776521
Q ss_pred hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
...+..+.+.|+++.|..+..+.+++|+..|..+|.++.
T Consensus 583 -------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 583 -------------IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp -------------HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -------------hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 124567888999999999999999999999988877653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.9e-30 Score=257.97 Aligned_cols=273 Identities=17% Similarity=0.159 Sum_probs=237.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch----------hhhHhHHHHHHHHHHHhhcCCCCCcHh
Q 042204 196 SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE----------HAKLSMLRTATWTLSNFCRGMPRPIFE 265 (559)
Q Consensus 196 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~----------~~~~~~~~~a~~~L~nL~~~~~~~~~~ 265 (559)
.+....+.+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.|+|+|.||+.+.+.....
T Consensus 43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456677999999999998 6889999999999999999942 235789999999999999886433333
Q ss_pred h--HhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcC
Q 042204 266 Q--VRPALPVLAQLVHSNDKEVLTDACWALYFLSNG-KNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 266 ~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~ 341 (559)
. ..+++|.|+.+|.+++++++..++|+|+||+.. +++....+.+.|+++.|+++| .+.+..+++.|+++|+|++..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 3 356799999999999999999999999999975 456678889999999999974 667788999999999999996
Q ss_pred ChHHHHHHH-hCCChHHHHHHhcCCCch----hHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 342 DDFQTQCII-NCGALPYLLVLLIHSHKK----SIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 342 ~~~~~~~~~-~~g~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
++.....+. ..|+++.|+.+|.++ ++ .+++.|+|+|.|++. +++++++.+++.|+++.|+.+|.+++.+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 655444555 789999999999876 43 599999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
+.|+|+|.|++.. ++++...+++.|++++|+++|.+.++.+++.+.++|.+++...+
T Consensus 281 ~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 281 SNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999865 78899999999999999999999999999999999999997643
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.3e-30 Score=259.08 Aligned_cols=268 Identities=19% Similarity=0.178 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHHhCCCchhhhhhh-c
Q 042204 158 QLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-----------PNDDIREQAVWALGNVAGDSPRCRDLVL-S 225 (559)
Q Consensus 158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~ 225 (559)
..+..|+|+|.|++. ++++|+.+++.|+++.|+.+|.. .++.+++.|+|+|.|++..++..+..+. .
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 556689999999999 68999999999999999999942 3478999999999999988777777775 4
Q ss_pred cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-C-CCcHhhHhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChh
Q 042204 226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-P-RPIFEQVRPALPVLAQLV-HSNDKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 226 ~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~-~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~ 302 (559)
.|++++|+.+| .+.+.+++..++|+|.||+... + ........|++|.|+.+| ++.+++++..++++|++|+...++
T Consensus 126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 56699999999 5678899999999999999863 2 223333479999999975 667899999999999999975655
Q ss_pred HHHHHH-HhCcHHHHHHhhCCCCCc----chhhHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHH
Q 042204 303 KIQAVI-EAGVCPRLVELLGHRSSS----VLSPALQTIGHIVA---GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHA 374 (559)
Q Consensus 303 ~~~~~~-~~g~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a 374 (559)
....+. ..|+++.|+.+|.+.++. ++..|+++|.|++. ++++.++.+.+.|+++.|+.+|.++ +..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence 555565 789999999999987653 88999999999997 6788888999999999999999998 99999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 042204 375 CWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGS 428 (559)
Q Consensus 375 ~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~ 428 (559)
+|+|+|++.+++++++.+++.|+++.|+++|.+++.++++.|+|+|.|++.+..
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999998899999999999999999999999999999999999999998743
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=4e-27 Score=224.93 Aligned_cols=240 Identities=27% Similarity=0.391 Sum_probs=222.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204 142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD 221 (559)
Q Consensus 142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 221 (559)
|.+|.|+++|++++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999999 99999999999999998888999999999999999999999999999999999999998888999
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
.+.+.|+++.++.++ .+.+..++..++|+|.+++...+. .......++++.|+.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 567889999999999999975532 223334789999999999999999999999999999888
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK 380 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 380 (559)
+...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred hhcC
Q 042204 381 ITAG 384 (559)
Q Consensus 381 l~~~ 384 (559)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9863
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=5.3e-27 Score=226.92 Aligned_cols=235 Identities=18% Similarity=0.139 Sum_probs=203.3
Q ss_pred HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE-LLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361 (559)
Q Consensus 283 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l 361 (559)
.+-+..|+..|.+++... +....+...|+++.|+. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456788999999999654 45667889999999999 9999999999999999999999999888999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 042204 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCI 441 (559)
Q Consensus 362 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 441 (559)
|+++.+..+++.|+|+|+|++.+++...+.+++.|+++.|+.+|++++++++..|+|+|++++.+ +++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999999999999999999999999999999999999999999999987 67888999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHh
Q 042204 442 KPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE-NNEIHEKSVKILET 520 (559)
Q Consensus 442 ~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~ 520 (559)
++|+.+|.++++.++..++.+|.+++........... ...+.+..++++ .++.+|.++ +.++|++|..||++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543321110 012447777874 488888776 89999999999999
Q ss_pred hcCCCC
Q 042204 521 YWCGRV 526 (559)
Q Consensus 521 ~f~~~~ 526 (559)
||..++
T Consensus 285 ~f~~~~ 290 (296)
T 1xqr_A 285 CFSSPA 290 (296)
T ss_dssp HCC---
T ss_pred HcCCCC
Confidence 997644
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.9e-27 Score=226.16 Aligned_cols=239 Identities=34% Similarity=0.515 Sum_probs=220.0
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204 142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD 221 (559)
Q Consensus 142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 221 (559)
...+.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999999 89999999999887776788889999999999999999999999999999999999998888899
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC-cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP-IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
.+.+.|+++.|+.++ .+.+..++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 5578899999999999999886444 34455789999999999999999999999999999888
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK 380 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 380 (559)
++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998888888999999999999999998 99999999999999
Q ss_pred hhc
Q 042204 381 ITA 383 (559)
Q Consensus 381 l~~ 383 (559)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.2e-26 Score=219.73 Aligned_cols=241 Identities=26% Similarity=0.386 Sum_probs=222.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-CCc
Q 042204 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-RPI 263 (559)
Q Consensus 185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~ 263 (559)
|.++.|+.+|.+++++++..|+++|.+++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++...+ ...
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6789999999999999999999999999988887888999999999999999 56678999999999999998753 233
Q ss_pred HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 264 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 343 (559)
.....++++.++.++.+++++++..++++|++++...++....+.+.|+++.|+++|.++++.++..|+++|+|++.+++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 33447899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
...+.+.+.|+++.|+.++.++ ++.++..|+|+|+|++.++++..+.+.+.|+++.|++++.+++++++..|+++|.|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8888899999999999999998 999999999999999998899999999999999999999999999999999999999
Q ss_pred hcCC
Q 042204 424 TSGG 427 (559)
Q Consensus 424 ~~~~ 427 (559)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=9.3e-27 Score=222.64 Aligned_cols=238 Identities=36% Similarity=0.543 Sum_probs=216.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.+++.|++++++.+..|++.|+++++. ..+.+..+++.|++|.|+++|++++ +.++..|+++|++++.++++.+.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 468999999999999999999999998887 3677889999999999999999998 99999999999999998999999
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
.+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+++...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999987665447888999999999999 5668899999999999999875
Q ss_pred CCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 260 PRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 260 ~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
+... .....+++|.|+.++.++++.++..++++|++++..+++..+.+.+.|+++.|+.++.+.++.++..|+++|+|+
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3322 223478999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred hc
Q 042204 339 VA 340 (559)
Q Consensus 339 ~~ 340 (559)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-24 Score=229.14 Aligned_cols=322 Identities=11% Similarity=0.126 Sum_probs=260.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCch
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
...+.+++.|.+++.+.+..|+..|..+ +.. .+.++.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYL-SLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHH-hCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence 3567788888888877789999999996 432 55556555 55779999999996 45 78999999999999985331
Q ss_pred --------------------------------------hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204 177 --------------------------------------DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 177 --------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
++..+++.|++|.|+.+++++++.++++|+|+|.|++.+ +.
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 356778899999999999999999999999999999977 67
Q ss_pred hhhhhhccCCHHHHHHHhchhhhH--hHHHHHHHHHHHhhcCC-CCCcHh--hHhchHHHHHHhhcc-CCH---------
Q 042204 219 CRDLVLSEEALIPLLAQLNEHAKL--SMLRTATWTLSNFCRGM-PRPIFE--QVRPALPVLAQLVHS-NDK--------- 283 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~~~~--~~~~~a~~~L~nL~~~~-~~~~~~--~~~~~l~~L~~lL~~-~d~--------- 283 (559)
.|..+.+.|++++|+.++....+. ..+..|+++|+++.... |...+. ...+++|.|+.+|.. +..
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 899999999999999999655433 27899999999998544 211110 113899999999972 211
Q ss_pred ----hHHHHHHHHHHHhccCCh----hHHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCC-
Q 042204 284 ----EVLTDACWALYFLSNGKN----DKIQAVIEA-GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCG- 353 (559)
Q Consensus 284 ----~v~~~a~~~L~~l~~~~~----~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g- 353 (559)
--+..|+.+|.||+..++ +..+.++.. |+++.|..+|.+++..++..|+++++|++...+...+.+.+.+
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence 126799999999998762 334667874 9999999999999999999999999999985543223343322
Q ss_pred -----ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhc--CChhHHHHHHHHHHHHhc
Q 042204 354 -----ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQN--AEINIKNWAAWAISNATS 425 (559)
Q Consensus 354 -----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~--~~~~v~~~a~~aL~nl~~ 425 (559)
.++.|+.++.+. +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.+ ++.+++..++.++.||+.
T Consensus 650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 377899999988 99999999999999987778888888876 799999999998 899999999999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-23 Score=219.71 Aligned_cols=361 Identities=12% Similarity=0.076 Sum_probs=282.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.|.+.+++ ..++..|+..|.++-+...... ..+. .+.+.++++|.+++ .+-+..|++.|..++. +++.+
T Consensus 296 ~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VK 368 (778)
T 3opb_A 296 NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVK 368 (778)
T ss_dssp HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHH
T ss_pred hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHH
Confidence 356777777765 4778889999999866532211 1111 26788899998877 5679999999999999 78888
Q ss_pred HHHHhC-CCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch--------------------------------------
Q 042204 179 KVVIDH-GAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR-------------------------------------- 218 (559)
Q Consensus 179 ~~i~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-------------------------------------- 218 (559)
..+++. |+++.|+.++++ .+..+...++.+|.|++...+.
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 888775 569999999995 7788999999999999964331
Q ss_pred hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHh---HHHHHHHHHHH
Q 042204 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKE---VLTDACWALYF 295 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~ 295 (559)
.+..+.+.|++++|+.++ .+.++.++..++|+|.||+............|+++.|+.++.+.... .+..|+++|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 345678899999999998 66788999999999999998755555555689999999999877544 89999999999
Q ss_pred hccCChhHHHHHH--H-hCcHHHHHHhhCC-CCCc-------------chhhHHHHHHHhhcCCh----HHHHHHHhC-C
Q 042204 296 LSNGKNDKIQAVI--E-AGVCPRLVELLGH-RSSS-------------VLSPALQTIGHIVAGDD----FQTQCIINC-G 353 (559)
Q Consensus 296 l~~~~~~~~~~~~--~-~g~l~~L~~lL~~-~~~~-------------v~~~al~~L~nl~~~~~----~~~~~~~~~-g 353 (559)
++...+... .+- . .|+++.|+.+|.. +... -+.+|+.+|.|++..++ ...+.++.. |
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 984433221 111 1 3899999999983 2211 15689999999999873 345667875 9
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH-HHHHHcC------CHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 354 ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI-QAVIDAG------LIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 354 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~li~~~------~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+++.|..+|.++ +..+|+.|+|+++|++.. ++.+ +.+.+.+ -++.|+.++..+|.++|+.|+|+|.|++..
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998 999999999999999873 4443 3443222 378999999999999999999999999754
Q ss_pred CCHHHHHHHHHc-CChHHHHhcCCC--CChHHHHHHHHHHHHHHHhhh
Q 042204 427 GSHEQIKYLVRE-KCIKPLCDLLPC--ANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 427 ~~~~~~~~l~~~-~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~~~ 471 (559)
.+..+..+++. ++++.++.++.. ++++++..++-++.|++.+..
T Consensus 685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 56677777776 799999999988 899999999999999997543
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=4.1e-23 Score=191.52 Aligned_cols=198 Identities=36% Similarity=0.537 Sum_probs=186.3
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 347 (559)
.+..+.|..+++++|++++..|+|+|++++..+++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 56788999999999999999999999999988888888999999999999999999999999999999999998888888
Q ss_pred HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 348 ~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++..|+++|.|++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 999999999999999999 999999999999999998899999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204 428 SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 428 ~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il 467 (559)
.++....+.+.|+++.|+.++.+.+++++..++++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5778888899999999999999999999999999999874
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=1.7e-22 Score=195.43 Aligned_cols=188 Identities=16% Similarity=0.168 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ 235 (559)
Q Consensus 157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l 235 (559)
.+-+..|+..|.+++. +.++...+++.|++|.|+. +|.++++.+++.|+|+|+|++.+++.+|+.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678999999999999 6778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204 236 LNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP 314 (559)
Q Consensus 236 l~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 314 (559)
|..+++..+++.|+|+|+|++++.+... .....+++|.|+.+|++++..++..|+|+|++++.++++.++.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9655578999999999999999874332 233468999999999999999999999999999988888889999999999
Q ss_pred HHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204 315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 345 (559)
.|+.+|.+++..+++.|+++|++|+.+.+..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999985543
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=8.4e-23 Score=189.37 Aligned_cols=199 Identities=34% Similarity=0.500 Sum_probs=180.9
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh
Q 042204 140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC 219 (559)
Q Consensus 140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 219 (559)
..|..|.|+.+|++++ +.++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.+++.|+|+|+|++...+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999998 999999999999999889999999999999999999999999999999999999999888888
Q ss_pred hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 220 r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
+..+.+.|+++.|+.++ .+.+..++..++|+|.|++...+... .....+++|.|+.++.++++.++..++++|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999 66688999999999999998653322 23347899999999999999999999999999998
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 299 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
.+++..+.+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=177.48 Aligned_cols=197 Identities=18% Similarity=0.124 Sum_probs=171.2
Q ss_pred cHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 143 VVPRFVEFLMREDYP--QLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~--~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
.+|.++++|.+++ + +++..|+++|.+++.++++++..+++.|+||.|+++|.++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc----------------cCCHh
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH----------------SNDKE 284 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~ 284 (559)
..+.+.|++++|+.+|..+.+.++++.++.+|+||+.... .......+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999999655678999999999999987653 233445678999987652 13679
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcC
Q 042204 285 VLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 285 v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~ 341 (559)
++.+|..+|+||+..+++..+.+.+. |+++.|+.+++. .+.+.++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776777778775 788999999875 2556889999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=174.94 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=165.2
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 100 IFAAMVAGVWSDDN--NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 100 ~l~~lv~~L~s~~~--~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
.+|.+++.|+++++ +.+..|+..++++.... ++++..+++.|+||.|+++|++++ +++|+.|+|+|.||+.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 57999999999988 88999999999976543 677889999999999999999988 999999999999999988999
Q ss_pred HHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch---------------hhh
Q 042204 178 TKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE---------------HAK 241 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~---------------~~~ 241 (559)
+..+++.|+||.|+++|. +++.+++++|+.+|+|++... ..+..+.+ +++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 579999999999999998764 45666665 468999876531 125
Q ss_pred HhHHHHHHHHHHHhhcCCCCCcHhhH--hchHHHHHHhhcc------CCHhHHHHHHHHHHHhccC
Q 042204 242 LSMLRTATWTLSNFCRGMPRPIFEQV--RPALPVLAQLVHS------NDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 242 ~~~~~~a~~~L~nL~~~~~~~~~~~~--~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~ 299 (559)
..++++++++|.||+...+..+..+. .|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 68999999999999986533333332 5789999999874 2668999999999999854
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.77 E-value=8.4e-17 Score=172.79 Aligned_cols=380 Identities=12% Similarity=0.143 Sum_probs=263.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV 180 (559)
Q Consensus 101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 180 (559)
+|.+...++++++..+..|+..+..+.... +. ......++|.+..++++++ +.+|..|+.+|+.++..... .
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~ 276 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---E 276 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---H
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---c
Confidence 444444455555555555555555543321 11 0112336677777777666 67888888888877752111 1
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
.....+++.++.++.++++++|..|+++|+.++...+. .+........++.+..++ .+.+..++..++++|..++...
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence 12345788999999999999999999999999854322 111111223456666666 6778899999999999987642
Q ss_pred CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204 260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~ 339 (559)
.. ......++|.+..++++.+++++..++.++..+....... .....+++.+..++.+.++.++..++.+++.++
T Consensus 356 ~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 356 GK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11 1224568899999999999999999999998887433211 122357888999999999999999999999987
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204 340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW 418 (559)
Q Consensus 340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~ 418 (559)
..-... .....+++.+..+|.++ +..+|..|+.+++.++.. .++. ....++|.|..++.++++.+|..+++
T Consensus 431 ~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~ 502 (588)
T 1b3u_A 431 GQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLF 502 (588)
T ss_dssp HHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred HHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 521110 11224578888889888 899999999999999762 2221 12348888988888889999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH
Q 042204 419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK 498 (559)
Q Consensus 419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~ 498 (559)
++..++.....+ .....+++.|..+++++++.++..++++|..+...... + + .....++.
T Consensus 503 ~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----------~-~----~~~~~~p~ 562 (588)
T 1b3u_A 503 CINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-----------S-T----LQSEVKPI 562 (588)
T ss_dssp HHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-----------H-H----HHHHHHHH
T ss_pred HHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch-----------h-h----hHHHHHHH
Confidence 999998642222 12345899999999999999999999999998854211 1 1 11344677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 499 IENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 499 l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
|..+..+.+.+|+..|...+..+-
T Consensus 563 l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCchhHHHHHHHHHHHhh
Confidence 888899999999999999988653
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.76 E-value=3.8e-17 Score=183.39 Aligned_cols=353 Identities=14% Similarity=0.157 Sum_probs=259.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.-+.+++.|.++++.++..++..+..++..+.... -.++++.|++.+.+++ +.++..|+.+|+.++...+....
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhc
Confidence 44667778888889999999999999887641111 2458899999999988 89999999999999974333211
Q ss_pred HHH----hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 180 VVI----DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 180 ~i~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
.-. -..+++.|++++.++++.+|..|+++|+++....+.. ...+ ...++.++..+ .+.+..+++.++++|..
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~-~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALA-GDEEPEVRKNVCRALVM 241 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHH-TCCCHHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 100 1246788888889999999999999999887554321 1111 13456666666 56788999999999999
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhh-----------
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELL----------- 320 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL----------- 320 (559)
++...+.........+++.+..++.+.++.++..|++.+..+++.... ...+.. .+++.++..+
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 998764333334567888888999999999999999999999865321 122221 4567777776
Q ss_pred CC-----------CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204 321 GH-----------RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389 (559)
Q Consensus 321 ~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 389 (559)
.+ .+..++..|..+|+.++...... ++. .+++.+...+.++ +..+|..|++++++++.+..+.+
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHH
Confidence 23 34567888999999988643321 222 4678888888888 99999999999999998877665
Q ss_pred HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE-QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
...+. ++++.++..+.++++.+|..|+|++++++....+. ...+ -.++++.|+..+.+.++.++..++++|.++.+
T Consensus 395 ~~~l~-~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 395 IPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 54443 47999999999999999999999999988631110 0011 12467888888888899999999999999986
Q ss_pred hhh
Q 042204 469 VGE 471 (559)
Q Consensus 469 ~~~ 471 (559)
...
T Consensus 472 ~~~ 474 (852)
T 4fdd_A 472 EAC 474 (852)
T ss_dssp HHG
T ss_pred Hhh
Confidence 644
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.74 E-value=2.2e-16 Score=169.57 Aligned_cols=381 Identities=12% Similarity=0.091 Sum_probs=284.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.+.+.++++++.++..|+..+..+.... +. ......++|.+..++++++ +.+|..|+.+|..++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 5667777788899999999999999986542 11 1223568899999998888 899999999999998743321
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
.....++|.+..++.+++..+|..++.+|+.++..... .......++.++.++ .+.++.++..++++|..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12235788899999999999999999999999743211 111233577788887 6778899999999999999875
Q ss_pred CCCcH--hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 260 PRPIF--EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 260 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
+.... .....++|.+..++++.++.++..++++|+.++..-... .....+++.+..++.++++.++..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33211 345778899999999999999999999999998432221 1223478889999998888999999999988
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWA 416 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a 416 (559)
++...... .....++|.|..++.+. +..+|..++.++..++.. .++ .....+++.+...+.+++..+|..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87643211 11225678888888887 899999999999998741 111 1111267888888999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204 417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL 496 (559)
Q Consensus 417 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l 496 (559)
+.++..++....++. ....+++.|..++.+++..++..+++++..+...-.. ..+ ....+
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-----------~~~-----~~~~~ 521 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-----------DIT-----TKHML 521 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-----------HHH-----HHHTH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-----------HHH-----HHHHH
Confidence 999999987533332 2345788899988889999999999999998754211 111 23456
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 497 EKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 497 ~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
+.|..+..+++++|+..+.+.+..++.
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 788888899999999999999988764
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=1e-16 Score=179.97 Aligned_cols=395 Identities=13% Similarity=0.121 Sum_probs=277.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+-.++..+.+.+..+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.+|..++.+++.|+......
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~-- 124 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ-- 124 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc--
Confidence 3445555556788999999999999987642 111111122345567777788777 899999999999999843111
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhh----ccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVL----SEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~----~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL 255 (559)
.-.+.++.|++.+.++++.+++.++.+|+.++.+.+...+.-. -...++.++..+ .+.+..++..+++++.++
T Consensus 125 --~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 125 --NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp --TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTT
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 1135789999999999999999999999999865443211100 012344555555 567889999999999988
Q ss_pred hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
....+.........+++.+..++.++++.++..++++|..++...++.....++ ++++.+...+.+.++.++..|+.++
T Consensus 202 ~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 202 IISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp TTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHH
Confidence 876443223334678899999999999999999999999999766654433333 4788888999998899999999999
Q ss_pred HHhhcCChHHHHHHHhC---CChHHHHHHh-----------cC--C--------CchhHHHHHHHHHHHhhcCCHHHHHH
Q 042204 336 GHIVAGDDFQTQCIINC---GALPYLLVLL-----------IH--S--------HKKSIKNHACWTISKITAGNREQIQA 391 (559)
Q Consensus 336 ~nl~~~~~~~~~~~~~~---g~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~ 391 (559)
..++..... .. .+.. .+++.++..+ .+ . .+..+|+.|+.++..++...++ .
T Consensus 281 ~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~ 355 (852)
T 4fdd_A 281 LTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---E 355 (852)
T ss_dssp HHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---G
T ss_pred HHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---H
Confidence 999875421 11 2211 3456666665 22 0 1345789999999988753221 1
Q ss_pred HHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 392 VIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 392 li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
++. .+++.+...+.++++.+|..|++++++++.+.. +.... .-.++++.+..+++++++.|+..+++++.++.....
T Consensus 356 ~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 356 LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 222 267788888888999999999999999998753 33222 123578999999999999999999999999886533
Q ss_pred hhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 472 AEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
... ...+. .+.++.|.+...+.++.|++.|.+.+..+..
T Consensus 433 ~~~--------~~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 433 SQP--------PDTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HSC--------TTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cch--------HHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 211 00111 1345666677777899999999999987754
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.73 E-value=3.1e-16 Score=168.05 Aligned_cols=331 Identities=16% Similarity=0.164 Sum_probs=229.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV 180 (559)
Q Consensus 101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 180 (559)
++.+.+.|+++++.++..|+..+.++.. .+... .++|.+.++|.+++ +.+|..|++++.++...+++..
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~-- 156 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV-- 156 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence 4555566778888888888777777531 22222 25678999999888 9999999999999998666533
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204 181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
.+.+.++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ .+.++-.+..++.++..++...
T Consensus 157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~- 233 (591)
T 2vgl_B 157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD- 233 (591)
T ss_dssp -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS-
T ss_pred -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC-
Confidence 2346789999999999999999999999999987764321111223466677776 3445556666777776665321
Q ss_pred CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204 261 RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337 (559)
Q Consensus 261 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n 337 (559)
......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+.
T Consensus 234 ---~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 234 ---DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp ---HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 233467888888899999999999999999999742 333444333 345677777664 778899999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417 (559)
Q Consensus 338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~ 417 (559)
++...+..... .+..+. .+.++ +..+|..|++++.+++.. ++++. +++.|...+.+.+.+++..++
T Consensus 309 i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~--~nv~~-----iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 309 IVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQ--ANIAQ-----VLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCS--STHHH-----HHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCCh--hhHHH-----HHHHHHHHHhcCCHHHHHHHH
Confidence 98754422111 111111 11244 577888888888888643 22332 455677777778888888888
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
++|++++... +.... .+++.|++++...+..++..++.++..++...
T Consensus 375 ~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 375 RAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence 8888888763 22222 25678888887777777777777777777543
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=3.7e-16 Score=151.37 Aligned_cols=260 Identities=13% Similarity=0.101 Sum_probs=203.8
Q ss_pred HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc
Q 042204 138 VIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP 217 (559)
Q Consensus 138 ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 217 (559)
....+.++.|+..|.+++ +.+|..|+++|+++.. .++++.|+.++.++++.++..|+++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345678999999999888 9999999999999874 2468899999999999999999999999864322
Q ss_pred hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 218 RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 218 ~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
.... .++.+...+..+.+..++..++++|.++....+ .....+++.|..++.++++.++..++++|+++.
T Consensus 87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 2111 123333233366788999999999999985432 123467889999999999999999999999886
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 042204 298 NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT 377 (559)
Q Consensus 298 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~ 377 (559)
. .+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2478999999999999999999999999854333 3467888999888 99999999999
Q ss_pred HHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHH
Q 042204 378 ISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIV 456 (559)
Q Consensus 378 L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~ 456 (559)
|+++. + ...++.|+..+.+++ ++..|+++|..+.. ..+++.|..++. .++++++
T Consensus 216 L~~~~--~---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRK--D---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTT--C---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHH
T ss_pred HHHhC--C---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHHH
Confidence 99985 2 247888999997654 88999999998853 136788888885 4677888
Q ss_pred HHHHHHHHH
Q 042204 457 TVCLKGLEN 465 (559)
Q Consensus 457 ~~~l~~l~~ 465 (559)
..+.+.+.+
T Consensus 271 ~~~~~~l~~ 279 (280)
T 1oyz_A 271 TSAIDKLKR 279 (280)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 887777653
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=2.6e-14 Score=147.59 Aligned_cols=411 Identities=13% Similarity=0.145 Sum_probs=292.7
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCCc----------------hHHHHH-hcCcHHHHHHhhcCCCCHHH
Q 042204 99 EIFAAMVAGVWS--DDNNLQLEATTKFRKLLSIERSP----------------PIEEVI-QSGVVPRFVEFLMREDYPQL 159 (559)
Q Consensus 99 ~~l~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~----------------~~~~ii-~~g~v~~Lv~lL~~~~~~~~ 159 (559)
.+++.++..|+. .|.+....++..|..+++.+..+ ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 468999999985 57788888999998887754221 122333 5678999999999988 899
Q ss_pred HHHHHHHHHHHhcCCch-hHHHHHhC-CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc
Q 042204 160 QYEAAWALTNIASKTSE-DTKVVIDH-GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN 237 (559)
Q Consensus 160 ~~~a~~~L~nl~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~ 237 (559)
|..++.+|..++...++ ..+.+... ++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.|++++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997777 66777754 99999999999999999999999999999999999999999999999999995
Q ss_pred hhh---hHhHHHHHHHHHHHhhcCCC-CCcHhhHhchHHHHHHhhccCCH------hHHHH---HHHHHHHhccCC----
Q 042204 238 EHA---KLSMLRTATWTLSNFCRGMP-RPIFEQVRPALPVLAQLVHSNDK------EVLTD---ACWALYFLSNGK---- 300 (559)
Q Consensus 238 ~~~---~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~lL~~~d~------~v~~~---a~~~L~~l~~~~---- 300 (559)
... ...+...++.++.||.+..+ ........+++|.|..++..+++ ....+ ++.++.-++...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 432 23577889999999999874 33344457889999999875432 23344 566666666442
Q ss_pred --hhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHHHHHHHhCC---------ChHHHHHHhcCCCc
Q 042204 301 --NDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQTQCIINCG---------ALPYLLVLLIHSHK 367 (559)
Q Consensus 301 --~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~g---------~l~~L~~lL~~~~~ 367 (559)
......+.+.|+++.|++++..+ ...++..|+.+++.+.+++....+.+.+.. ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23456788999999999998875 456889999999999999987666554432 33345555655547
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHc----------CCH---HHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 042204 368 KSIKNHACWTISKITAGNREQIQAVIDA----------GLI---GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKY 434 (559)
Q Consensus 368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~----------~~i---~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 434 (559)
..+|.+|+.++..+..++++....++.. +.+ ..|..-+-+.|+.-.--|+.++.++... +++....
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 8899999999999998887655555532 111 1244555556665445588888888876 4444444
Q ss_pred HHH-----------cCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHH
Q 042204 435 LVR-----------EKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL 502 (559)
Q Consensus 435 l~~-----------~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L 502 (559)
+.. .-+++.+..+|. ..++++...-+..|...+.. .++....++.+...+..|...
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e------------~p~AV~dFL~~~s~l~~L~~~ 525 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSN------------CPIAVTHFLHNSANVPFLTGQ 525 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTT------------CHHHHHHHHHSTTHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC------------ChHHHHHHHcCCchHHHHHHH
Confidence 333 112555566664 35677766666666666633 334456677766677777765
Q ss_pred hcC--C--CHHHHHHHHHHHHhhcC
Q 042204 503 QSH--E--NNEIHEKSVKILETYWC 523 (559)
Q Consensus 503 ~~~--~--~~~v~~~a~~il~~~f~ 523 (559)
..+ . +.-|+-.+.-++--++.
T Consensus 526 i~~~~~~~~~lvqGL~a~LLGi~ye 550 (651)
T 3grl_A 526 IAENLGEEEQLVQGLCALLLGISIY 550 (651)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHhh
Confidence 432 2 23356666666655443
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=2.3e-14 Score=147.97 Aligned_cols=368 Identities=14% Similarity=0.143 Sum_probs=268.0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCch
Q 042204 99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
+.++.|...+.+. -.+.+..|+..|+.+. +. .. ..+.+++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s-k~---y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLS-KK---YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTT-TT---TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHH-HH---hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5789999988854 4789999999999973 32 22 233456889999999865 3478899999999998775432
Q ss_pred -----------------hHHHH-HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhc-cCCHHHHHHHh
Q 042204 177 -----------------DTKVV-IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLS-EEALIPLLAQL 236 (559)
Q Consensus 177 -----------------~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~-~g~l~~Ll~ll 236 (559)
.++.+ .+.+.++.|+.+|++.+..+|..++.+|..++...+. .++.++. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 12233 3467899999999999999999999999999987776 7788874 48999999999
Q ss_pred chhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhC
Q 042204 237 NEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAG 311 (559)
Q Consensus 237 ~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 311 (559)
.+....++..++..|.+|+++.+... ....+++++.|+.++.... ..+..+++.++.+|...+......+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 56667788889999999999874433 3344799999999997654 47899999999999999888888899999
Q ss_pred cHHHHHHhhCCCCCc------chhh---HHHHHHHhhcCCh------HHHHHHHhCCChHHHHHHhcCCC-chhHHHHHH
Q 042204 312 VCPRLVELLGHRSSS------VLSP---ALQTIGHIVAGDD------FQTQCIINCGALPYLLVLLIHSH-KKSIKNHAC 375 (559)
Q Consensus 312 ~l~~L~~lL~~~~~~------v~~~---al~~L~nl~~~~~------~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~ 375 (559)
.++.|..+|..++.. .... ++.++.-++..+. .....+.++|+++.|+.++..+. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999764332 1122 6666776766522 23456788999999999987542 567999999
Q ss_pred HHHHHhhcCCHHHHHHHHHcC---------CHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc----C--
Q 042204 376 WTISKITAGNREQIQAVIDAG---------LIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVRE----K-- 439 (559)
Q Consensus 376 ~~L~nl~~~~~~~~~~li~~~---------~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 439 (559)
.+++.++.+++.....+.+.. ++..|+.++.+. ..++|.+|+.++..+..+. ++....++.. .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence 999999999988877776532 233344444433 5789999999999999873 3333333322 0
Q ss_pred ----Ch---HHHHhcCCCCChHHHHHHHHHHHHHHHhhhhh
Q 042204 440 ----CI---KPLCDLLPCANPTIVTVCLKGLENILKVGEAE 473 (559)
Q Consensus 440 ----~l---~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~ 473 (559)
.+ ..|+.-+-+.|+.-.--+.-++..++......
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 01 12334444556633333555666666554433
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.66 E-value=7.8e-15 Score=157.21 Aligned_cols=330 Identities=15% Similarity=0.115 Sum_probs=243.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.++.+++.+++++...+..+...+..++... ++.. .-+++.+.+-|++++ +.+|..|+.+|+++.. ++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~-----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMA-----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHH-----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHH-----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence 5678888999999999988888887765431 1111 125678888888888 9999999999999864 44444
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
. +++.+.+++.++++.+|..|++++.+++...|+. +...+.++.+..+| .+.++.++..|+++|..++...
T Consensus 121 ~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 Y-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp H-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 3 3578999999999999999999999998766542 22335677788877 6788999999999999999876
Q ss_pred CCC-cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 260 PRP-IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 260 ~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
+.. ........++.|+..+...++..+..++.+++.++..++... ..+++.+..++.+.++.|+..|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 533 233345667778888888899999999999999885544332 24678888899999999999999999998
Q ss_pred hcC---ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHH
Q 042204 339 VAG---DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNW 415 (559)
Q Consensus 339 ~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~ 415 (559)
... +++..+.+. ..+.+.|+.++. + ++.+|..|+.+|..+....++.++. .+..+. .+.+++..++..
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLE 337 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHH
Confidence 742 233333332 255677776664 6 8999999999999997643332211 111121 122445899999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 416 AAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 416 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
|++.+.+++...+ +.. +++.|..++.+.|.+++..+.++|..+...
T Consensus 338 al~~L~~l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 338 KLDIMIRLASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp HHHHHHHTCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 9999999886543 222 466777888888999999998888887643
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=4.5e-14 Score=136.61 Aligned_cols=257 Identities=14% Similarity=0.127 Sum_probs=196.4
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
...+.++.|+..|.++++.+|..|+++|+++.. ...++.|+..+ .+.+..++..++++|..+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTT-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccc-
Confidence 346789999999999999999999999999851 12478888888 67788999999999999864321
Q ss_pred CcHhhHhchHHHHH-HhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204 262 PIFEQVRPALPVLA-QLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340 (559)
Q Consensus 262 ~~~~~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 340 (559)
....+++.|. .+++++++.++..++++|+++....+... ..+++.|...+.++++.++..|+++|+++..
T Consensus 87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1233455555 34678899999999999999974433221 2357889999999999999999999998754
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHH
Q 042204 341 GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420 (559)
Q Consensus 341 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL 420 (559)
...++.|..++.++ ++.+|..|+|+|+.+....+. .++.|+.++.++++.++..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 25789999999998 999999999999998544443 567888999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHH
Q 042204 421 SNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIE 500 (559)
Q Consensus 421 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~ 500 (559)
.++.. ...++.|..++.+++ ++..+.++|..+- . ...++.|.
T Consensus 217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~---~---------------------~~~~~~L~ 258 (280)
T 1oyz_A 217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELG---D---------------------KTLLPVLD 258 (280)
T ss_dssp HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC---C---------------------GGGHHHHH
T ss_pred HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC---c---------------------hhhhHHHH
Confidence 98852 236778888887654 7777888877642 1 12345555
Q ss_pred HHh-cCCCHHHHHHHHHHHH
Q 042204 501 NLQ-SHENNEIHEKSVKILE 519 (559)
Q Consensus 501 ~L~-~~~~~~v~~~a~~il~ 519 (559)
.+. .++++++...+...+.
T Consensus 259 ~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 259 TMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhcCCCcHHHHHHHHHhh
Confidence 554 5677888777777664
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.62 E-value=4.1e-14 Score=158.99 Aligned_cols=354 Identities=13% Similarity=0.189 Sum_probs=243.9
Q ss_pred HHHHHHHHhcCC-------CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 100 IFAAMVAGVWSD-------DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 100 ~l~~lv~~L~s~-------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
.+|.++..+... ++..+..+...|..+...-..... ..+++.+.+.+++.+ +..|..|+++|+.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 567777777642 346777888888876543211111 135677777888877 8999999999999998
Q ss_pred CCc-hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh---hhhhhccCCHHHHHHHhchhhhHhHHHHH
Q 042204 173 KTS-EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC---RDLVLSEEALIPLLAQLNEHAKLSMLRTA 248 (559)
Q Consensus 173 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a 248 (559)
+.. +.....+. .+++.++..+.++++.+|..++|+++.++...... ... -...++.++..+. +. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~-~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQ-DH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHT-SC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhc-cC-hHHHHHH
Confidence 643 33333332 57899999999999999999999999998532110 011 1124667777773 33 7889999
Q ss_pred HHHHHHhhcCCC----CCcHhhHhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204 249 TWTLSNFCRGMP----RPIFEQVRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322 (559)
Q Consensus 249 ~~~L~nL~~~~~----~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~ 322 (559)
+|++.+++.... .........+++.|..++.+.+ +.++..++.+++.++...+......+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 2222445778888888887544 789999999999998655443333333 356666666542
Q ss_pred C---------------CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCch-hHHHHHHHHHHHhhcCCH
Q 042204 323 R---------------SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKK-SIKNHACWTISKITAGNR 386 (559)
Q Consensus 323 ~---------------~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 386 (559)
. ...++..++.+|++++...........+ .+++.+..++.+. +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 1 2346778999999998755432211222 4677788888877 66 899999999999986322
Q ss_pred HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC--hHHHHHHHHHHH
Q 042204 387 EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN--PTIVTVCLKGLE 464 (559)
Q Consensus 387 ~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~~l~~l~ 464 (559)
......+.. ++|.|...+.+.+++++..++.++..++.........++ ..+++.+...+.+.+ ++++..++.++.
T Consensus 631 ~~~~~~l~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHHH-HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 223333333 788999999888899999999999998875433322232 236777778776654 889999999999
Q ss_pred HHHHhh
Q 042204 465 NILKVG 470 (559)
Q Consensus 465 ~il~~~ 470 (559)
.++...
T Consensus 708 ~l~~~~ 713 (861)
T 2bpt_A 708 DIASNI 713 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.61 E-value=3.8e-14 Score=159.20 Aligned_cols=401 Identities=12% Similarity=0.139 Sum_probs=266.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT- 178 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~- 178 (559)
.++.+.+.+.+.++..+..|+..+..+............+. .++|.++..+.+++ +.+|..++|+|+.++.......
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence 44556667788899999999999999875421122222232 47899999998887 9999999999999986321100
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-----chhhhhhhccCCHHHHHHHhch-hhhHhHHHHHHHHH
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS-----PRCRDLVLSEEALIPLLAQLNE-HAKLSMLRTATWTL 252 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~r~~i~~~g~l~~Ll~ll~~-~~~~~~~~~a~~~L 252 (559)
..-.-..+++.++..+.++ +.++..|+|+|.+++... ......+ ...++.++..+.. +.+..++..++.++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0000124578888888776 899999999999997431 1111121 1235566666642 33468899999999
Q ss_pred HHhhcCCCCCcHhhHhchHHHHHHhhccC---------------CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204 253 SNFCRGMPRPIFEQVRPALPVLAQLVHSN---------------DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV 317 (559)
Q Consensus 253 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~~---------------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 317 (559)
..++...+.........++|.++..+... ...++..++.+|..++...+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99998765444445566777777776521 3457788999999988654432222222 4678888
Q ss_pred HhhCCCCC-cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204 318 ELLGHRSS-SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG 396 (559)
Q Consensus 318 ~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~ 396 (559)
..+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..|+++++.++....+.+..... .
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-A 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-H
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchHH-H
Confidence 88888776 89999999999998654333322333 4788889899777 8889999999999998633333333333 3
Q ss_pred CHHHHHHHhhcCC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC-----------hHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAE--INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN-----------PTIVTVCLKGL 463 (559)
Q Consensus 397 ~i~~Li~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d-----------~~v~~~~l~~l 463 (559)
+++.+++.+.+.+ ++++..++.+++.++.........++- .+++.+...+.... ..++..+++++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 7788888888764 889999999999998753333333332 35777777776431 35778888888
Q ss_pred HHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC----CHHHHHHHHHHHHhhc
Q 042204 464 ENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE----NNEIHEKSVKILETYW 522 (559)
Q Consensus 464 ~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~----~~~v~~~a~~il~~~f 522 (559)
..++..-..... ...++... .++.|.....+. +..+++.|..++..+.
T Consensus 759 ~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 759 VGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp HHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 888854221000 01112222 234454554442 7899999998888764
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=1.8e-13 Score=142.20 Aligned_cols=389 Identities=11% Similarity=0.058 Sum_probs=266.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHH
Q 042204 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
+..++..+.++|.+.+..|...|..+-.. + ..++++.|+.++.+.+ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 45677778899999999999999885321 0 1246677888887652 489999999999999764311110
Q ss_pred H-----------HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh--hHhHHH
Q 042204 180 V-----------VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--KLSMLR 246 (559)
Q Consensus 180 ~-----------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~--~~~~~~ 246 (559)
. -....+-..|+..|.++++.+ ..++.+++.|+..... ... -.+.++.++..+ .+. +..++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~-~~~--w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP-VNQ--WPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG-GTC--CTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc-ccc--cHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 011123456778888888888 8899999999854211 001 134677888888 444 778999
Q ss_pred HHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCChhHHH-HHHHhCcHHHHHHhhCC
Q 042204 247 TATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN--DKEVLTDACWALYFLSNGKNDKIQ-AVIEAGVCPRLVELLGH 322 (559)
Q Consensus 247 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~ 322 (559)
.++.+|..++... +.........+++.+..++.+. ++.++..++++++++...-.+... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999754 2222334466888899999887 789999999999987643322111 01111246777777888
Q ss_pred CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH---------------
Q 042204 323 RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE--------------- 387 (559)
Q Consensus 323 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------- 387 (559)
+++.++..+++++..++..........+...+++.++..+.+. ++.++..|++.+..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8889999999999999875543322222226777788888887 899999999999988743110
Q ss_pred ------HHHHHHHcCCHHHHHHHhhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204 388 ------QIQAVIDAGLIGPLINLLQN-------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT 454 (559)
Q Consensus 388 ------~~~~li~~~~i~~Li~lL~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 454 (559)
..+..+ ..++|.++..+.. .++.++..|..+|..++........ ..+++.+...+.++++.
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChH
Confidence 111111 2256777777753 2457899999999999875432221 23677888888999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 455 IVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 455 v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
++..++.+|..+....... .+...+ ...++.|..+..++++.|+..|.+.+.++..
T Consensus 382 ~r~aal~~l~~l~~~~~~~-----------~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPS-----------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTT-----------TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHH-----------HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999988522100 001111 3467888888899999999999999998865
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=2.1e-13 Score=153.50 Aligned_cols=406 Identities=13% Similarity=0.176 Sum_probs=260.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh--
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED-- 177 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~-- 177 (559)
.++.+...+.+.++..+..|+..+..+............. ..++|.++..|++++ +.+|..|+|+|++++...+..
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 4566667788899999999999999987643112232222 448999999999888 999999999999999854331
Q ss_pred -HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc---------------hhhhhhhccCCHHHHHHHhchhh-
Q 042204 178 -TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP---------------RCRDLVLSEEALIPLLAQLNEHA- 240 (559)
Q Consensus 178 -~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------~~r~~i~~~g~l~~Ll~ll~~~~- 240 (559)
...+ ..+++.|+..+.++ +.++..++|+|++++.... .....+ ...++.|+..+....
T Consensus 445 ~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~ 519 (876)
T 1qgr_A 445 NDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG 519 (876)
T ss_dssp STTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS
T ss_pred cHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCc
Confidence 1111 24677888888775 8999999999999984311 011111 124555555553321
Q ss_pred -hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-----------CC----HhHHHHHHHHHHHhccCCh-hH
Q 042204 241 -KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-----------ND----KEVLTDACWALYFLSNGKN-DK 303 (559)
Q Consensus 241 -~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d----~~v~~~a~~~L~~l~~~~~-~~ 303 (559)
+..++..+..++..++...+.........++|.++..+.. +| ++++..+++++..++..-. ..
T Consensus 520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 3467778888999888876544445556777777766542 22 4567889999999986655 33
Q ss_pred HHHHHHhCcHHHHHHhhCCCC--CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204 304 IQAVIEAGVCPRLVELLGHRS--SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI 381 (559)
Q Consensus 304 ~~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 381 (559)
..... ..+++.++.++.+.. ..++..++.+++.++..........+. .+++.+...|.+..++.+|..|+++++.+
T Consensus 600 ~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 600 ALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 33322 347888888888764 468899999999998743322222222 36678888887643688999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC----Ch--
Q 042204 382 TAGNREQIQAVIDAGLIGPLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA----NP-- 453 (559)
Q Consensus 382 ~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----d~-- 453 (559)
+......+...++ .+++.|++.+.+ .+.+++..+++++++++....++...++ ..+++.|...+..+ |+
T Consensus 678 ~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~ 754 (876)
T 1qgr_A 678 CRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDM 754 (876)
T ss_dssp HHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHH
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHH
Confidence 8632223333333 378888888887 3678999999999999863222222222 22566666666543 22
Q ss_pred -----HHHHHHHHHHHHHHHhhhhhccc-ccccCcchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHhhc
Q 042204 454 -----TIVTVCLKGLENILKVGEAEKNM-DTAIGDVNQYAQLVEEAEGLEKIENLQSHE--NNEIHEKSVKILETYW 522 (559)
Q Consensus 454 -----~v~~~~l~~l~~il~~~~~~~~~-~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~f 522 (559)
.++..++.++..++......... ..+.....+|...+ ++.+..+..++ +..++..|..++..+.
T Consensus 755 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 755 VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 67888888888887653221000 00000122233332 24455554555 7899999888877643
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=1.7e-13 Score=147.35 Aligned_cols=292 Identities=18% Similarity=0.121 Sum_probs=182.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
....+++.+.+++...+..+.-.+..++.. ++.... -+++.|.+-|++++ +.+|..|+++|+++.. ++..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH-
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH-
Confidence 556778888899999888888888887543 222111 15778888899888 8999999999999985 3322
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
..+++.+..+|.++++.+|..|+.+++++....|+... +.++.+..++ .+.++.++..|+++|..++...
T Consensus 141 ----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 141 ----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp ----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence 24678899999999999999999999999876665322 3556666666 6778899999999999998764
Q ss_pred CCCcHhhHhchHHHHHHhhcc---------------CCHhHHHHHHHHHHHhccCChhHHHHHHH---------------
Q 042204 260 PRPIFEQVRPALPVLAQLVHS---------------NDKEVLTDACWALYFLSNGKNDKIQAVIE--------------- 309 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--------------- 309 (559)
+.. .......+|.++.+|.. .++..+..++.+|+.++..+++..+.+.+
T Consensus 211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence 321 22345667777766642 47888888888888888655432111100
Q ss_pred ----------------------hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCc
Q 042204 310 ----------------------AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHK 367 (559)
Q Consensus 310 ----------------------~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 367 (559)
..++..|..++.++++.++..|+.+|+.++...+.. +. .....++..+.++ +
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d 363 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-D 363 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-C
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-C
Confidence 012334444444455555555555555555422211 11 2334444555554 5
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 368 KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
..+|..|..++..++.. .++.. +++.|...+.+.+.+++..++.+|+.++.
T Consensus 364 ~~Ir~~alelL~~l~~~--~nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 364 VSIKRRAMELSFALVNG--NNIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHHHCCS--SSTHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccc--ccHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555555555555432 11111 23444445555555555555555555554
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.56 E-value=4.2e-13 Score=151.03 Aligned_cols=275 Identities=18% Similarity=0.212 Sum_probs=195.2
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchH-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 100 IFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 100 ~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~-~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.++.+.+.+.++ +...+..|+.++..++..- .+.. .......+++.+.+.+.+++ ++++..++++|..++...++
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHH
Confidence 566777788876 6889999999999876532 1111 01111236778888887777 89999999999999986655
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch------------------hhhhhh--ccCCHHHHHHHh
Q 042204 177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR------------------CRDLVL--SEEALIPLLAQL 236 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------------------~r~~i~--~~g~l~~Ll~ll 236 (559)
.....+...+++.++..+.+.++.++..|++++.+++..... ...... -...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 544444457889999988889999999999999988743110 000000 012355566666
Q ss_pred ch------hhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHH
Q 042204 237 NE------HAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIE 309 (559)
Q Consensus 237 ~~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~ 309 (559)
.. +.+..++..+..++..++...+ ......+++.+...+.+.++.++..++++++.++.... +.....+
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 32 2345788888999988887543 13356778888888888999999999999999997654 3333333
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH--HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT--QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
..+++.++..+.++++.+|..|++++++++....... ...+ ..+++.|+..|.+ ++.++..|+|++.+++.
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999997543211 0111 1456777888765 47899999999999975
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.54 E-value=2.6e-14 Score=148.49 Aligned_cols=360 Identities=12% Similarity=0.089 Sum_probs=243.8
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCch----------HHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 042204 100 IFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPP----------IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWAL 167 (559)
Q Consensus 100 ~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~----------~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L 167 (559)
.+..+...+.+. +..++..|+..|++++...-.+. ...-....+-..++..|.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 445566666654 68899999999999875421000 000011234456777888777 678 8999999
Q ss_pred HHHhcCCchhHHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhh-hHh
Q 042204 168 TNIASKTSEDTKVVIDHGAVPIFVKLLASP--NDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHA-KLS 243 (559)
Q Consensus 168 ~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~-~~~ 243 (559)
+.|+....... .-.+.++.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ...++.++..+.... +..
T Consensus 114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence 99987421110 1146889999999888 8999999999999998643 22111111 124666777774432 688
Q ss_pred HHHHHHHHHHHhhcCCCC--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC
Q 042204 244 MLRTATWTLSNFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG 321 (559)
Q Consensus 244 ~~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~ 321 (559)
++..+++++.++...... ........+++.+...+.+.++.++..++++|..++....+.....+..++++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999997643210 001111235777777788889999999999999998655543322232267788888888
Q ss_pred CCCCcchhhHHHHHHHhhcCChH---------------------HHHHHHhCCChHHHHHHhcCC------CchhHHHHH
Q 042204 322 HRSSSVLSPALQTIGHIVAGDDF---------------------QTQCIINCGALPYLLVLLIHS------HKKSIKNHA 374 (559)
Q Consensus 322 ~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~~~~~g~l~~L~~lL~~~------~~~~v~~~a 374 (559)
+.++.++..|+..+..++..... .....+ ..+++.++..+... .+..+|..|
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence 88889999999999988764210 000001 23456666666432 145799999
Q ss_pred HHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204 375 CWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT 454 (559)
Q Consensus 375 ~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 454 (559)
+.+|..++...++ .++. .+++.+...+.+.++.+|..|+.+++.++.+..++..... -..+++.++.++.++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHH
Confidence 9999999863222 2222 3677788888899999999999999999986543221111 145789999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 042204 455 IVTVCLKGLENILKVGE 471 (559)
Q Consensus 455 v~~~~l~~l~~il~~~~ 471 (559)
++..++++|.++...-.
T Consensus 424 Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987643
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.52 E-value=1e-12 Score=153.30 Aligned_cols=407 Identities=13% Similarity=0.110 Sum_probs=270.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
..++.++..+.+.|.+.+..|+..|.+.+..... ..+.-....+++.+++.|.+++ +.+|..|+.+|+.++...++.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~- 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY- 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH-
Confidence 3678999999999999999999999987654311 1111111246788999998777 899999999999999855441
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh------hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC------RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL 252 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L 252 (559)
.+ ..+++.|+..+.++++.+|..|+.+|+.++...+.. .... -...++.|+..+..+.+..++..++.++
T Consensus 83 -~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 83 -QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp -HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred -HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 236788888898989999999999999998543321 0001 1235777888874346778999999999
Q ss_pred HHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhH
Q 042204 253 SNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS-SSVLSPA 331 (559)
Q Consensus 253 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~a 331 (559)
..++...+.........+++.+...+.+.++.++..++.+++.++...++. + -..+++.++..|.+.+ ..++..+
T Consensus 159 ~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHH
Confidence 999964432222345778888888999989999999999999999665432 1 2246788887776543 5788899
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-----
Q 042204 332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ----- 406 (559)
Q Consensus 332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~----- 406 (559)
+.+++.++..........+ ..+++.++..+.+. ++.+|..+++++..++...++.+...+. .+++.+++.+.
T Consensus 235 ~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~ 311 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNY 311 (1230)
T ss_dssp HHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---
T ss_pred HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCC
Confidence 9999999875433221111 36789999999887 8999999999999988632221111111 13333333221
Q ss_pred --------------------------------cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204 407 --------------------------------NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT 454 (559)
Q Consensus 407 --------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 454 (559)
+..+++|..|+.++..++.... +....+ -..+++.|...+.+.+..
T Consensus 312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~d~~~~ 389 (1230)
T 1u6g_C 312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREEN 389 (1230)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSH
T ss_pred CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHH-HHHHHHHHHHHcCCCchH
Confidence 1124678999999999887433 222222 245788899999888999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccc------ccCcchH-HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204 455 IVTVCLKGLENILKVGEAEKNMDT------AIGDVNQ-YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523 (559)
Q Consensus 455 v~~~~l~~l~~il~~~~~~~~~~~------~~~~~~~-~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~ 523 (559)
++..++.++..++........... ...+... ....+ ...++.+.....++++.++..+..++..+..
T Consensus 390 Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 390 VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 999999999888764221000000 0000000 11111 1234566666778888988888877776543
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.51 E-value=7e-12 Score=134.79 Aligned_cols=357 Identities=13% Similarity=0.112 Sum_probs=253.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+..+-+.+++++...+..++..+..+.... .+. ..+.+..++++.+++ ...+..+.-.+..++..+++...
T Consensus 35 e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~ 106 (618)
T 1w63_A 35 ECAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHL 106 (618)
T ss_dssp HHHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHH
Confidence 4556667777777666777766666554332 221 236677788888888 79999999899999986655333
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~ 259 (559)
. ++..|.+-|.++++.++..|+++|+++.. +. .+ ...++.+...+ .+.++.+++.|+.++.++....
T Consensus 107 l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~---~~--~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 107 L-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE---MC--RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp H-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH---HH--HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHC
T ss_pred H-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH---HH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHC
Confidence 2 46788889999999999999999999963 22 11 12466777777 6788999999999999999865
Q ss_pred CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC---------------CC
Q 042204 260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH---------------RS 324 (559)
Q Consensus 260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~---------------~~ 324 (559)
|. .+...++.+..++.+.|+.|+..|+++|..++..+++....+. .+++.++.+|.+ .+
T Consensus 174 p~----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~ 247 (618)
T 1w63_A 174 PE----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISD 247 (618)
T ss_dssp GG----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred hH----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence 42 3347788888899999999999999999999976554322222 567777776652 35
Q ss_pred CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc------CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCH
Q 042204 325 SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI------HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398 (559)
Q Consensus 325 ~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i 398 (559)
+-.+..++++|+.++..++.... ..++.|..++. +. +..+..+|++++..+.. .+.... ..+
T Consensus 248 ~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~-~~aV~~ea~~~i~~l~~-~~~l~~-----~a~ 315 (618)
T 1w63_A 248 PFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNV-GNAILYETVLTIMDIKS-ESGLRV-----LAI 315 (618)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTH-HHHHHHHHHHHHHHSCC-CHHHHH-----HHH
T ss_pred ChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccch-HHHHHHHHHHHHHhcCC-CHHHHH-----HHH
Confidence 66778899999999987654332 35556666653 23 56899999999998854 333222 256
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDT 478 (559)
Q Consensus 399 ~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~ 478 (559)
+.|..++.++++.+|..|+.+|..+... .+. ++ ......+..++.++|..++..+++++..+....
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~-~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~-------- 381 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQT-DHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN-------- 381 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHH-HHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS--------
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhh-CHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc--------
Confidence 7888899999999999999999999874 222 22 235678889999999999999999998876321
Q ss_pred ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
| .... ++.|.....+.+.+++..+...|..+
T Consensus 382 -----n-v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 382 -----N-IRGM------MKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp -----S-THHH------HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----c-HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 1111 23333444456677777666666554
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=6.5e-12 Score=115.78 Aligned_cols=188 Identities=20% Similarity=0.189 Sum_probs=157.4
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc
Q 042204 184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263 (559)
Q Consensus 184 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~ 263 (559)
.+.++.|+.+|.++++.+|..|+++|+.+.. ...++.|+..+ .+.+..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4578999999999999999999999999742 23578899988 56788999999999998853
Q ss_pred HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 264 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 343 (559)
...++.|..++.++++.++..++++|+.+.. .+.++.|+.+|.++++.++..|+++|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3578899999999999999999999999863 2467899999999999999999999999843
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
...++.|..++.++ ++.+|..|+++|+.+. .+. .++.|..++.++++.++..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 14678899999888 9999999999999994 333 577788899999999999999999998
Q ss_pred hcCC
Q 042204 424 TSGG 427 (559)
Q Consensus 424 ~~~~ 427 (559)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
No 59
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.43 E-value=5.1e-12 Score=147.31 Aligned_cols=399 Identities=12% Similarity=0.132 Sum_probs=262.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch----HHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcC
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASK 173 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~----~~~ii~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~ 173 (559)
..++.++..+.++++..+..|+..+..+...-.... ...-....++|.|++.+.+ ++ +.++..|+.+|..++..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888765432210 0111223578999999984 66 89999999999999852
Q ss_pred CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204 174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253 (559)
Q Consensus 174 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~ 253 (559)
..+.-.. .-..+++.|+..|.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++.
T Consensus 165 ~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 165 QGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp TCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred hHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2211100 0124667888888889999999999999999865432 11 12357788888855444456777888888
Q ss_pred HhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-----------
Q 042204 254 NFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH----------- 322 (559)
Q Consensus 254 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~----------- 322 (559)
.++...+..-......++|.+...+.+++++++..+++++..++....+.....+ ..+++.++..+..
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccc
Confidence 8887654322234578899999999988999999999999988865443222222 2245555554431
Q ss_pred --------------------------CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHH
Q 042204 323 --------------------------RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACW 376 (559)
Q Consensus 323 --------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~ 376 (559)
..+.+|..|+.++..++.........++ ..+++.+...+.+. +..+|..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~ 396 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFH 396 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHH
Confidence 1234688899999988874443233333 36778888888777 8899999998
Q ss_pred HHHHhhc--CC-----------------HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204 377 TISKITA--GN-----------------REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR 437 (559)
Q Consensus 377 ~L~nl~~--~~-----------------~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 437 (559)
++..++. +. ...+..++. .+++.+...+.+.++.++..++.++..++.........++
T Consensus 397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-- 473 (1230)
T 1u6g_C 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-- 473 (1230)
T ss_dssp HHHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--
T ss_pred HHHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--
Confidence 8887764 11 122222322 2677777779999999999999999988865321111111
Q ss_pred cCChHHHHhcCCCCC--hHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHH
Q 042204 438 EKCIKPLCDLLPCAN--PTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV 515 (559)
Q Consensus 438 ~~~l~~L~~lL~~~d--~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~ 515 (559)
..+++.+...|.+.. ..++..++..+..++..... ..+...+ ...++.|.....+.+..|+..|.
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~-----------~~~~~~l--~~llp~L~~~l~d~~~~v~~~al 540 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP-----------QVFHPHV--QALVPPVVACVGDPFYKITSEAL 540 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG-----------GGGHHHH--TTTHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH-----------HHHHhHH--HHHHHHHHHHHcccchHHHHHHH
Confidence 236778888887765 48888888888887753211 1112222 23456666666777888877776
Q ss_pred HHHHhhc
Q 042204 516 KILETYW 522 (559)
Q Consensus 516 ~il~~~f 522 (559)
.++..+.
T Consensus 541 ~~l~~l~ 547 (1230)
T 1u6g_C 541 LVTQQLV 547 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.43 E-value=1.1e-11 Score=113.17 Aligned_cols=184 Identities=20% Similarity=0.214 Sum_probs=157.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH
Q 042204 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF 264 (559)
Q Consensus 185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 264 (559)
+..+.++++|.++++.+|..|+++|+.+.. ...++.|+..+ .+.+..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 467889999999999999999999998742 13578899998 67788999999999998853
Q ss_pred hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204 265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 344 (559)
...++.|..++.++++.++..++++|+.+.. ...++.|+.+|.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578899999999999999999999999863 2367889999999999999999999999853
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
...++.|..++.++ ++.+|..|+++|+.+ +.++ .++.|..++.++++.++..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 999999999999999 3343 5777888899999999999999998864
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.42 E-value=5.1e-12 Score=116.53 Aligned_cols=187 Identities=20% Similarity=0.199 Sum_probs=157.7
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
...++.|+++|++++ +.+|..|+++|+.+.. ..+++.|+.+|.++++.++..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457899999999888 9999999999998865 2578999999999999999999999999842
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
.+.++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23578888888 67788999999999998854 3578899999999999999999999999852
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK 380 (559)
Q Consensus 301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 380 (559)
...++.|..++.++++.++..|+++|+.+.. + .+++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2357889999999999999999999999853 1 3467888899888 99999999999999
Q ss_pred hhcC
Q 042204 381 ITAG 384 (559)
Q Consensus 381 l~~~ 384 (559)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8653
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=5.6e-12 Score=115.29 Aligned_cols=184 Identities=21% Similarity=0.208 Sum_probs=157.5
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204 142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD 221 (559)
Q Consensus 142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 221 (559)
+..+.++++|++++ +.+|..|+++|+.+.. .+.++.|+.+|.++++.++..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 46789999999999 9999999999998865 2578999999999999999999999999842
Q ss_pred hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204 222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301 (559)
Q Consensus 222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 301 (559)
...++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 13578888888 67788999999999999753 3478889999999999999999999999863
Q ss_pred hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI 381 (559)
Q Consensus 302 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 381 (559)
.+.++.|..++.++++.++..|+++|+.+.. + ..++.|..++.++ ++.+|..|.++|..+
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2467889999999999999999999999832 2 2467888889888 999999999999987
Q ss_pred h
Q 042204 382 T 382 (559)
Q Consensus 382 ~ 382 (559)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.34 E-value=9.3e-10 Score=117.91 Aligned_cols=331 Identities=15% Similarity=0.127 Sum_probs=232.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
..+.+++.+.+++...+..+.-.+..++... ++.... +++.+.+=|++++ +.++..|+++|+++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~L-----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIRL-----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHHH-----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHHH-----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 4577888999999999998888888875432 221211 4677888888888 9999999999999965 44333
Q ss_pred HHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 180 VVIDHGAVPIFVKLL--ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
.+++.+.+++ .+.++.||..|+.++.++....|+ .+...+.++.+..+| .+.++.++.+|+.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3568888999 889999999999999999876554 333346788888888 67888999999999999998
Q ss_pred CCCCCcHhhHhchHHHHHHhhccC-------------CHhHHHHHHHHHHHhccCC-hhHHHHHHHhCcHHHHHHhhC--
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSN-------------DKEVLTDACWALYFLSNGK-NDKIQAVIEAGVCPRLVELLG-- 321 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~-------------d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~-- 321 (559)
..+..-.......+..|..++... ++..+...+..+..++..+ ++....+.+ ++..++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 653211112233334444444321 6889999999999988643 333333332 3444444332
Q ss_pred -------CCCC--cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204 322 -------HRSS--SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV 392 (559)
Q Consensus 322 -------~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 392 (559)
+.+. .|...|.+++..+.. .+.... .++..|..+|.+. ++.+|..|+.+|..++...+. ...
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHH
Confidence 1122 677788888888753 232222 3567788888888 899999999999999875431 112
Q ss_pred HHcCCHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 393 IDAGLIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 393 i~~~~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
+. ...+.++..|. ++|..++..++..+..++. +.++.. ++..|...+...|.+++..+..++..+..
T Consensus 366 ~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 366 VK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 22 36778888888 8899999999999999975 344444 44556666666788877777777766653
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=1.4e-09 Score=116.46 Aligned_cols=330 Identities=12% Similarity=0.116 Sum_probs=221.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFL--MREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL--~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
-.+..+.+-++++++..+-.|++.+.++.. ++ +. ..++|.+.++| .+.+ |-+|..|+.++.++...+++
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS---RE----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPD 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChh
Confidence 356778888999999999999999998732 12 22 23678889999 7777 99999999999999986654
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch------h----------h
Q 042204 177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE------H----------A 240 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~------~----------~ 240 (559)
... ..+.++.+.++|.++++.++..|+.++..++..++.. + ...++.++..|.+ . +
T Consensus 182 ~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 182 LVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp GCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred hcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 332 2488999999999999999999999999998765541 1 1134444444421 1 1
Q ss_pred hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh---------ccCCH--hHHHHHHHHHHHhccCChhHHHHHHH
Q 042204 241 KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV---------HSNDK--EVLTDACWALYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 241 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~ 309 (559)
++-.+...+..|..++...+..........++.++..+ ++.+. .|...++.++..+.. .++..+
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~---- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV---- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH----
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH----
Confidence 34455556666666654321111111223333333322 12233 788888999988862 332222
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQ 388 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~ 388 (559)
.++..|..+|.++++.++..|+.+|..++...+. ...+. .....++..|. ++ +..+|..|+.++..++ ++.+
T Consensus 329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~--~~~N 401 (621)
T 2vgl_A 329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTER-DVSVRQRAVDLLYAMC--DRSN 401 (621)
T ss_dssp -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHC--CHHH
T ss_pred -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCC-CHhHHHHHHHHHHHHc--Chhh
Confidence 2567788999888999999999999999976532 11222 45677888888 77 8999999999999996 4566
Q ss_pred HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
+..+ +..|...+...|.+++..++.+|+.++..-.+.. .-+++.|++++......+...+...+..++.
T Consensus 402 v~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~ 470 (621)
T 2vgl_A 402 AQQI-----VAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVI 470 (621)
T ss_dssp HHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred HHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 6554 5568888888899999999999998875211111 1135666666654444444444445555553
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.17 E-value=3.6e-10 Score=122.64 Aligned_cols=217 Identities=16% Similarity=0.124 Sum_probs=158.4
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHHHHhCC-Cch
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFV-KLLASPNDDIREQAVWALGNVAGD-SPR 218 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~ 218 (559)
..++| +++.|++++ +..|..|+++|++|+. +++.+..+...|+|..++ .+|.+++.+++..|+++|.||+.+ .+.
T Consensus 34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34555 556789988 8999999999999998 789999999999988765 578899999999999999999965 466
Q ss_pred hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
.++.+...|++++|+.++... ...+..+........ ......+ ..+...++.+|.+|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e 169 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLAL 169 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence 778888999999999998321 112222211110000 0001111 2345667778888888
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCC---CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh--cCCCchhHHHH
Q 042204 299 GKNDKIQAVIEAGVCPRLVELLGHR---SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL--IHSHKKSIKNH 373 (559)
Q Consensus 299 ~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~~v~~~ 373 (559)
.+++....+...+.++.|+..|.+. ...++..|+.+|.+++..++...+.+.+.+....+..++ ... ....+..
T Consensus 170 ~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~l 248 (684)
T 4gmo_A 170 ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVM 248 (684)
T ss_dssp HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHH
Confidence 8888888888889999999988543 346889999999999999998888888876543333332 223 3445788
Q ss_pred HHHHHHHhh
Q 042204 374 ACWTISKIT 382 (559)
Q Consensus 374 a~~~L~nl~ 382 (559)
++++|.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 999999985
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.02 E-value=6.9e-08 Score=82.16 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=174.7
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
.+..++..++.+|.+.-..++.+|+..+.+++...|+..+- .+..|+.++..+...........++..++...|
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence 34567889999999999999999999999999887765333 356677777777777777788888998887653
Q ss_pred CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204 262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341 (559)
Q Consensus 262 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 341 (559)
..+.+.+|.+..-..-.|+.++.+...+|..+...+++... +++..+..++.+++..-+..|+..|+.+...
T Consensus 103 ---e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 103 ---ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp ---HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred ---HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 55678889888888888999999999999999988776543 4567788999988877788888888888765
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHH
Q 042204 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421 (559)
Q Consensus 342 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~ 421 (559)
.... +. -.+|.|..+|... +.-||..|..+|.+++..++.....+. .-+.-+.+.+..+++.+..+|+
T Consensus 175 ~~~y---v~--PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 SFKY---VN--PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp THHH---HG--GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHH
T ss_pred Cccc---cC--cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHH
Confidence 5433 32 5789999999999 999999999999999988887444332 2355567778889999999999
Q ss_pred HHhcC
Q 042204 422 NATSG 426 (559)
Q Consensus 422 nl~~~ 426 (559)
.++.-
T Consensus 243 rl~l~ 247 (253)
T 2db0_A 243 RLLLL 247 (253)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88753
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.97 E-value=2.1e-08 Score=89.19 Aligned_cols=224 Identities=17% Similarity=0.137 Sum_probs=171.4
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 347 (559)
.+.+..|.++++..|+.++.+++.+|..+....+.......-..+++.++.++.+.+..+...|+++|+.+..+.+-.-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45778899999999999999999999999866444444444456899999999999999999999999999987653222
Q ss_pred HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 348 ~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
.+. .+...|.+++.++ ++-++.+|+-.++-+--. .+. ++..+..++.+.+.+++..++.++.+++.
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~~---------V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSKL---------VRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCHH---------HHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchHH---------HHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 222 3467888999988 999999999999988322 222 56678888889999999999999999987
Q ss_pred CC-CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHh-
Q 042204 426 GG-SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQ- 503 (559)
Q Consensus 426 ~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~- 503 (559)
.. +++. -.+++.-+-.+|+++|+.++..++.++..++...-. .|..- +-.+......+|.
T Consensus 180 ~S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~----------~~~~~---~~~~~~~~v~~l~~ 241 (265)
T 3b2a_A 180 SSADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL----------ENVKI---ELLKISRIVDGLVY 241 (265)
T ss_dssp GCSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC----------SCCHH---HHHHHHHHHHHGGG
T ss_pred ccCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc----------HhHHH---HHHHHHHHHHHHHH
Confidence 53 2222 234677888899999999999999999999966221 11111 2234456777787
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 042204 504 SHENNEIHEKSVKILETY 521 (559)
Q Consensus 504 ~~~~~~v~~~a~~il~~~ 521 (559)
....|.++.+|-.+.+..
T Consensus 242 ~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 242 REGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CSSCHHHHHHHHHHHHHH
T ss_pred hcCChhHHHHHHHHHHHH
Confidence 678899999998776643
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.91 E-value=1.5e-07 Score=102.31 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=190.8
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 042204 100 IFAAMVAGVW---SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-------YPQLQYEAAWALTN 169 (559)
Q Consensus 100 ~l~~lv~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-------~~~~~~~a~~~L~n 169 (559)
.+..|-+.|. ++++.++--|+..|.-+-++... . ++..|...|.+++ .+.++..|+..|+.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3455555565 56677788888888776544211 1 4566777776543 36799999999999
Q ss_pred HhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT 249 (559)
Q Consensus 170 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~ 249 (559)
+..|+... .+++.|..++.+.+..+++.|+.+||.+-..+.. . .++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence 87755321 2466788888877778888999999988433222 1 13567777765566778999999
Q ss_pred HHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHH--hccCChhHHHHHHHhCcHHHHHHh-hCCCCC
Q 042204 250 WTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYF--LSNGKNDKIQAVIEAGVCPRLVEL-LGHRSS 325 (559)
Q Consensus 250 ~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~--l~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~ 325 (559)
.+|..+..+. ...++.++..|. +.++-++..++.+++- ...++... ++.|+.. ..+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 9999887765 234556666665 5678888888777754 33444433 3433333 345667
Q ss_pred cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh
Q 042204 326 SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL 405 (559)
Q Consensus 326 ~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL 405 (559)
.+|..|+..||.+..++++ .++.++.+|.+..++.+|..|+++++.++++++. . .++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----HHHHHHHHHc
Confidence 7999999999999877652 3456666554433999999999999999986543 1 1566778888
Q ss_pred hcCChhHHHHHHHHHHHHhcCCC
Q 042204 406 QNAEINIKNWAAWAISNATSGGS 428 (559)
Q Consensus 406 ~~~~~~v~~~a~~aL~nl~~~~~ 428 (559)
.+.+..|+..|+.+|+.+..+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999987643
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.89 E-value=6.4e-08 Score=94.70 Aligned_cols=278 Identities=14% Similarity=0.066 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
...+.+++.++++|...+....-.+..+... .++.+ =++..|.+=+++++ +-+|-.|+++|++|.. ++..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence 4567888999999999999888888776443 23322 16788889999998 9999999999999987 3333
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.. +.+.+.+.|.+.++.||..|+.+..++....|+. + .+++..+-.++ .+.++.++.+|+.+|..++..
T Consensus 138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 32 4567888899999999999999999999877663 2 24678888887 667788889999999999875
Q ss_pred CCCCcHhhHhchHHHHHHhhccC---CHhHHHHHHHHHHHhccCC-hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSN---DKEVLTDACWALYFLSNGK-NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT 334 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~ 334 (559)
. ...+..++.-+... ++..+...++.+..+...+ +. ....+++.+...|++.++.|..+|+++
T Consensus 207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3 11334444444332 5666666677666666443 22 123567888899999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHH
Q 042204 335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKN 414 (559)
Q Consensus 335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~ 414 (559)
|..+...+.. .. ..++..|..+|.++ ++.+|..|+..|..+....|..++. .-..+.+++.++|..+..
T Consensus 274 I~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred HHhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 9988653221 11 24566777788888 8999999999999998766665443 233466777888777766
Q ss_pred HHHHHHH
Q 042204 415 WAAWAIS 421 (559)
Q Consensus 415 ~a~~aL~ 421 (559)
-|+..|.
T Consensus 343 ~Aittll 349 (355)
T 3tjz_B 343 LAITTLL 349 (355)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 6555543
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.88 E-value=4.9e-08 Score=95.52 Aligned_cols=316 Identities=12% Similarity=0.114 Sum_probs=177.6
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204 100 IFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177 (559)
Q Consensus 100 ~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 177 (559)
.+++ .+.++.. |+.....++..+-.+......-+..++ ..+.+.+++++.+++ ..++.-..-.+.+++...++.
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~ 102 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV 102 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH
Confidence 4445 3455544 444444455444444433212222222 135677889999999 899999999999988853322
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
+ =++..|.+=++++++-+|-.|+++|++|.... .-+. ..+++-+.+ .+.++.+++.|+.+...|..
T Consensus 103 ---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~ 168 (355)
T 3tjz_B 103 ---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLK 168 (355)
T ss_dssp ---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTT
T ss_pred ---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhc
Confidence 1 25778888889999999999999999996432 1111 234455555 67889999999999999987
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC---CCcchhhHHHH
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR---SSSVLSPALQT 334 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~ 334 (559)
..| ..+.+.++.+.+++.+.++.++.+|+.++..+...+... +..++..+... ++-.+...++.
T Consensus 169 ~~p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~ 235 (355)
T 3tjz_B 169 CSF----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRV 235 (355)
T ss_dssp TCH----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred cCH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHH
Confidence 653 345678889999999999999999999999998654322 33344444332 23334445555
Q ss_pred HHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204 335 IGHIVAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK 413 (559)
Q Consensus 335 L~nl~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 413 (559)
++.++..+ +.. ....++.+..+|++. ++.|..+|+.++..+...+.. +. ..++..|..++.++++.+|
T Consensus 236 l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~nir 304 (355)
T 3tjz_B 236 ASRQLEDEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALR 304 (355)
T ss_dssp HTCC----------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSH
T ss_pred HHHhccccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHH
Confidence 55555544 222 235677888889998 999999999999888542222 12 2356777888899999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204 414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL 463 (559)
Q Consensus 414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l 463 (559)
-.|+..|..+... .|+.+. .+-..+.+++.++|..+...|+..|
T Consensus 305 yvaLr~L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 305 YAAVRTLNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 9999999988875 333322 2556678888888888766655444
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.86 E-value=7.5e-09 Score=112.30 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=149.6
Q ss_pred chHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHH-HHhhCCCCCcchhhHHHHHHHhhcC-ChHHH
Q 042204 269 PALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRL-VELLGHRSSSVLSPALQTIGHIVAG-DDFQT 346 (559)
Q Consensus 269 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~-~~~~~ 346 (559)
.++| +++.|++.++..+..||++|++|+. ++...+.+...+++..+ ..+|.+++..|+..|+++|+||+.. .....
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4455 4466899999999999999999996 55566778888888765 5678889999999999999999965 35667
Q ss_pred HHHHhCCChHHHHHHhcCCC-------------c-------hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh
Q 042204 347 QCIINCGALPYLLVLLIHSH-------------K-------KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ 406 (559)
Q Consensus 347 ~~~~~~g~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~ 406 (559)
..++..|+++.|..++.... . ..+...++++|.+++.++.+....+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 78899999999999985320 0 123445778889998888888888988899999999985
Q ss_pred cC---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH---HHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 407 NA---EINIKNWAAWAISNATSGGSHEQIKYLVREKCIK---PLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 407 ~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
+. ..+++..|+.+|.+++.. +++....+.+.+... .+..+.++.++. +..+...|.|++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhh
Confidence 43 358999999999999987 667777777766533 333333444443 45566777887643
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.72 E-value=8.8e-07 Score=96.27 Aligned_cols=270 Identities=14% Similarity=0.124 Sum_probs=185.4
Q ss_pred cHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 042204 143 VVPRFVEFLM---REDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPN--------DDIREQAVWALGN 211 (559)
Q Consensus 143 ~v~~Lv~lL~---~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~n 211 (559)
++..|-..|. +++ +.++..|+.+|+.+..+... .++..|...|.+.+ +.++..|+..||-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3555556665 344 89999999999999986542 14667777776544 6788899999999
Q ss_pred HhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCHhHHHHHH
Q 042204 212 VAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDKEVLTDAC 290 (559)
Q Consensus 212 l~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~ 290 (559)
+...+. ++. ++..|...+. +.+..+...++.+|..+.-+... ..++..|+..+ .+.+..++..++
T Consensus 464 a~~GS~--~ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSA--NIE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCC--CHH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCC--CHH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 864332 112 3567777774 33334556777888776544321 22334444433 456788999999
Q ss_pred HHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 042204 291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS 369 (559)
Q Consensus 291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~ 369 (559)
.+|+.+..+.++.. +.+++.|. +.++.+|..++.+++.-..+.... ..++.|+..+.++.+..
T Consensus 530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99998887776554 44555554 467778888888887555544322 12444555554333788
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204 370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL-QNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448 (559)
Q Consensus 370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 448 (559)
+|..|+.+|+.|..++++ .++.++..| ++.++.+|..|++|++.+..+..... +++.|..++
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--------aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--------AIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--------HHHHHHHHc
Confidence 999999999999877543 566666644 56799999999999999986532111 466778888
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 042204 449 PCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 449 ~~~d~~v~~~~l~~l~~il~ 468 (559)
++.|..|+..|+.+|..+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998773
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.68 E-value=4e-06 Score=83.83 Aligned_cols=321 Identities=12% Similarity=0.125 Sum_probs=193.4
Q ss_pred CCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCc---hhhhhhhccC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 184 HGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSP---RCRDLVLSEE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 184 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..++..++++|+. .+.++.+..+..+.-+..++| .....+.+.. ....+........+.-....++.+++.++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4567788888874 778888888888888887766 2222222222 1222333222334444555666666666544
Q ss_pred CCCCcHhhHhchHH--HHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHHh--CcHHHHHHhhC----CC------
Q 042204 259 MPRPIFEQVRPALP--VLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIEA--GVCPRLVELLG----HR------ 323 (559)
Q Consensus 259 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~~lL~----~~------ 323 (559)
.+. .......++. -+...|.. .+...+.-++.+|..|...+. ....+.+. ..++.++.++. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 332 2333334444 34444544 234445567777877775433 43455543 24555554332 11
Q ss_pred -------CCcchhhHHHHHHHhhcCChHHHHHHHhCCCh--HHHHHHhcCCCchhHHHHHHHHHHHhhcCC----HHHHH
Q 042204 324 -------SSSVLSPALQTIGHIVAGDDFQTQCIINCGAL--PYLLVLLIHSHKKSIKNHACWTISKITAGN----REQIQ 390 (559)
Q Consensus 324 -------~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~~~~ 390 (559)
..+++..++.++.-++...+ ..+.+...++. +.|+.+++....++|-+-++.++.|+.... ...+.
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 12346778888888887544 55556555543 567777776547889999999999998754 23333
Q ss_pred H-HHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhc---------------------CC----C----HHHHHHHHH
Q 042204 391 A-VIDAGLIGPLINLLQN---AEINIKNWAAWAISNATS---------------------GG----S----HEQIKYLVR 437 (559)
Q Consensus 391 ~-li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~---------------------~~----~----~~~~~~l~~ 437 (559)
. ++..++ +.+++.|+. .|+++....-.....+-. .. + .++...+.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 3 333444 445566653 366655443332222211 10 1 122222222
Q ss_pred c--CChHHHHhcCCC----------CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC
Q 042204 438 E--KCIKPLCDLLPC----------ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH 505 (559)
Q Consensus 438 ~--~~l~~L~~lL~~----------~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~ 505 (559)
. .++..|+++|++ .|+.+...|+.-|+.+++..+. -+..+++.|+-+.+.+|+.|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhcC
Confidence 2 247888888863 4788899999999998876543 36678999999999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 042204 506 ENNEIHEKSVKILETY 521 (559)
Q Consensus 506 ~~~~v~~~a~~il~~~ 521 (559)
+|++|+..|...++++
T Consensus 459 ~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 459 SDSRVKYEALKATQAI 474 (480)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988875
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.67 E-value=1.2e-07 Score=88.94 Aligned_cols=185 Identities=14% Similarity=0.210 Sum_probs=141.8
Q ss_pred HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204 231 PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIE 309 (559)
Q Consensus 231 ~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 309 (559)
.+...+ .+.+...++.++..|..++.+.+.........+++.|..++. +.+..++..++.+++.++..-.......+.
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 366666 678899999999999999887432111223567888889994 899999999999999999543332223222
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQ 388 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~ 388 (559)
.+++.|+..+.+.+..+|..|..+|..++..... . .+++.+...|++. ++.+|..++..|..+... .++.
T Consensus 98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999999999999999875431 1 3577888999988 999999999999997543 3331
Q ss_pred -HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 389 -IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 389 -~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
....+. .++|.|..++.+.++++|..|..++..+...
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 122333 3889999999999999999999999998864
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.66 E-value=6.9e-06 Score=70.04 Aligned_cols=216 Identities=15% Similarity=0.162 Sum_probs=164.3
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHHHHhCCCch
Q 042204 140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL-ASPNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
+..++..++.+|+++- ..+|..|+.++..++..-++....+ +..|+.++ +++...+......++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 4457889999998887 6999999999999999877766554 34566665 456677767788999999977776
Q ss_pred hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 298 (559)
.-+. .++.+..-. .-.++.++.+..++|-.+.+..| ....+++.-+..++.++|..-+..|+..++-+..
T Consensus 104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 3221 244444444 33488999999999999998764 3446677778888998898778888888888776
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204 299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI 378 (559)
Q Consensus 299 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L 378 (559)
+..... .-.+|+|..+|.+.+.-||..|..+|+++++-++..... +..-+.-++.. +..+++..-..|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHHH
Confidence 555332 347899999999999999999999999999999875542 23445556777 788888888888
Q ss_pred HHhhc
Q 042204 379 SKITA 383 (559)
Q Consensus 379 ~nl~~ 383 (559)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.65 E-value=1.9e-06 Score=76.79 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=149.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
+.+..+...|+..|+..+..++..+.++++.. +......+-..++|.+++++.+.+ ..+...|++||..+..+.+-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 47788999999999999999999999999874 344444444568999999999888 8999999999999999765554
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
..+.. ++.+|..++.++++-+++.++..++.+---++ ...++..+..++ .+.+..++..++.++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 44443 57789999999999999999999999832221 112467788888 889999999999999999986
Q ss_pred CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204 259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 299 (559)
..++ .....++.-+-.++++.|+.++..|+.++-.+...
T Consensus 181 S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 181 SADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred cCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5222 23345556677889999999999999999998854
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.64 E-value=1.7e-07 Score=88.00 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=140.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH
Q 042204 188 PIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV 267 (559)
Q Consensus 188 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 267 (559)
+.+.+.+.+.+...|..|+..|..++...+.....- -..+++.+...+.++.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457788889999999999999999986532211000 0124556666663367888999999999999975422223455
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hH-H
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD-DF-Q 345 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~-~ 345 (559)
..++|.++..+.+.++.++..++.+|..+..... .. .+++.+...|.+.++.++..++..|+.+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7789999999999999999999999999986543 11 36788999999999999999999999975443 22 1
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
....+. .+++.|..+|.+. ++.+|..|..+++.++.
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 122233 5789999999988 99999999999999875
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.55 E-value=3.8e-08 Score=82.80 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=92.5
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204 310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389 (559)
Q Consensus 310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 389 (559)
...++.+..+|.++++.+|..|+++|+.+... .++.|..+|.++ ++.+|..|+|+|+++. ++.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~--~~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE-DWRIRGAAAWIIGNFQ--DER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS-CHHHHHHHHHHHGGGC--SHH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC-CHHHHHHHHHHHHhcC--CHH--
Confidence 35678899999999999999999999877431 258899999988 9999999999999984 332
Q ss_pred HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHH
Q 042204 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465 (559)
Q Consensus 390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~ 465 (559)
.++.|+.++.++++.+|..|+++|.++.. ++ .++.|..+++++++.++..+..+|.+
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47888999999999999999999999852 22 46788888999999999999988764
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=2.3e-08 Score=84.16 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=93.7
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
...++.++.+|++++ +.+|..|+++|+.+.. ..++.|+.+|.++++.+|..|+|+|+++..
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 456788999999888 8999999999987754 136899999999999999999999999842
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL 296 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 296 (559)
...++.|+..+ .+.++.++..++|+|.++.. ...++.|..+++++++.++..++++|..+
T Consensus 72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12478888888 67888999999999999862 35788899999999999999999998754
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.50 E-value=8.7e-07 Score=83.21 Aligned_cols=191 Identities=9% Similarity=0.075 Sum_probs=139.4
Q ss_pred HHHHhchhhhHhHHHHHHHHHHH-hhcCCCCCc--HhhHhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCCh-hHHH-
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSN-FCRGMPRPI--FEQVRPALPVLAQLV-HSNDKEVLTDACWALYFLSNGKN-DKIQ- 305 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~n-L~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~-~~~~- 305 (559)
+...+ .+.+..-++.++..|.. ++.+.+... ......++..|...+ ++.+..++..|+.+|+.++.+-. ..++
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34445 67788889999999999 886543322 222246688888889 68899999999999999985332 1222
Q ss_pred HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN 385 (559)
Q Consensus 306 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 385 (559)
.... .+++.+++.+++....|+..+..++-.++...+.......-..+++.|...|++. ++.+|.+++.+|..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2222 3789999999998889999988888888864321100000003567888999999 9999999999999998632
Q ss_pred H---HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204 386 R---EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425 (559)
Q Consensus 386 ~---~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~ 425 (559)
+ ......+...++|.|.+++.+.+.++|..|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 444455534599999999999999999999999998875
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.49 E-value=1.5e-05 Score=87.76 Aligned_cols=303 Identities=14% Similarity=0.155 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc--
Q 042204 98 LEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS-- 175 (559)
Q Consensus 98 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-- 175 (559)
...+..+++.+...+......++..+..++....... .+..+++..+.+.+.+.. .. +.|+.++..|+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~ 86 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLS 86 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCC
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCC
Confidence 3466778888887656666778888888766431111 111367888888888765 23 899999999995321
Q ss_pred -hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 176 -EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 176 -~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
..-..++ +.+|.++..+.+....|+..|..++..++..-+...- ...++.|+..+......+.+..++.++..
T Consensus 87 ~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 87 PSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp TTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2222333 6899999999999999999988888888754333211 23578888888555578899999999999
Q ss_pred hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204 255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG-KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ 333 (559)
Q Consensus 255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~ 333 (559)
|+...|.........++|.+.+.+.+..++|...|..++..+|.. .+..+ ...+|.|++.+.+++. ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~ 233 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVH 233 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHH
Confidence 998654444445688999999999999999999999988887742 11112 1468999999987743 445566
Q ss_pred HHHHhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHcCCHHHHHHHhhc-C
Q 042204 334 TIGHIVAGDD--FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDAGLIGPLINLLQN-A 408 (559)
Q Consensus 334 ~L~nl~~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~~~i~~Li~lL~~-~ 408 (559)
.|+.-..-.. .-+-.+ .+|.|..-|... ...+++.++-++.|+|. .+|.....++.. ++|.|-+.... .
T Consensus 234 ~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 234 LLGATTFVAEVTPATLSI----MVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIA 307 (986)
T ss_dssp HHTTCCCCSCCCHHHHHH----HHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCC
T ss_pred HhhcCeeEeeecchhHHH----HHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccC
Confidence 6654432221 111112 357777778777 88899999999999997 678877777654 78888777654 5
Q ss_pred ChhHHHHHHHHHHHHhc
Q 042204 409 EINIKNWAAWAISNATS 425 (559)
Q Consensus 409 ~~~v~~~a~~aL~nl~~ 425 (559)
+|++|..|..|+..+..
T Consensus 308 ~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 308 DPEAREVTLRALKTLRR 324 (986)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999988888887743
No 82
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.47 E-value=8.6e-07 Score=83.26 Aligned_cols=194 Identities=10% Similarity=0.102 Sum_probs=140.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-HhCCCchhhhhhhc-cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-CCcH-
Q 042204 189 IFVKLLASPNDDIREQAVWALGN-VAGDSPRCRDLVLS-EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-RPIF- 264 (559)
Q Consensus 189 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~r~~i~~-~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~~- 264 (559)
.+...+.+.+..-|..|+..|.. ++...+.......+ ...+..|...+..+.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567788999999999999999 87543332100011 12455666666566788889999999999997653 3333
Q ss_pred hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-
Q 042204 265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD- 343 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~- 343 (559)
.....++|.++..+.+..+.|+..+..++-.++...+.....-.-..+++.|...|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 4567789999999999999999998888888875332110000001267889999999999999999999999986554
Q ss_pred --HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 344 --FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 344 --~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
......+...+++.|..++.+. ++.+|..|..+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2222334247899999999998 99999999999998874
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.32 E-value=0.00023 Score=71.21 Aligned_cols=323 Identities=13% Similarity=0.090 Sum_probs=192.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc---hhHHHHHhCCCH-HHHHH-hhCCCCHHHHHHHHHHHHHHhCCC
Q 042204 142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS---EDTKVVIDHGAV-PIFVK-LLASPNDDIREQAVWALGNVAGDS 216 (559)
Q Consensus 142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~ 216 (559)
.++..++++|.....+++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 4678888988877668888888888888888665 333343443322 22333 344445555566666666665333
Q ss_pred chhhhhhhccCCHH--HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh--HhchHHHHHHhhcc------------
Q 042204 217 PRCRDLVLSEEALI--PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ--VRPALPVLAQLVHS------------ 280 (559)
Q Consensus 217 ~~~r~~i~~~g~l~--~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~--~~~~l~~L~~lL~~------------ 280 (559)
+...+.+. ..+. -++..|....+.+....++.+|..|.+.+..+.... ....+|.++.++..
T Consensus 157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 22111110 0112 244444322223334568888888887653332221 12345666543321
Q ss_pred ---C--CHhHHHHHHHHHHHhccCChhHHHHHHHhCcH--HHHHHhhCC-CCCcchhhHHHHHHHhhcCCh----HH-HH
Q 042204 281 ---N--DKEVLTDACWALYFLSNGKNDKIQAVIEAGVC--PRLVELLGH-RSSSVLSPALQTIGHIVAGDD----FQ-TQ 347 (559)
Q Consensus 281 ---~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l--~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~----~~-~~ 347 (559)
+ ..+++..++-+++-++.. ++..+.+...++. +.|+.+++. ..+++..-++.++.|+..... .. .+
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1 255678888888888854 3455666666643 566666665 467788889999999998652 11 22
Q ss_pred HHHhCCChHHHHHHhcCC--CchhHHHHHHHHHHHhhc-----------------C---------CHHHHHH----HHH-
Q 042204 348 CIINCGALPYLLVLLIHS--HKKSIKNHACWTISKITA-----------------G---------NREQIQA----VID- 394 (559)
Q Consensus 348 ~~~~~g~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~-----------------~---------~~~~~~~----li~- 394 (559)
.++..++++ ++..|... .++++....-+....+-. | ++..... +-+
T Consensus 314 ~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 333344544 55555332 155554433222222111 0 1111111 111
Q ss_pred -cCCHHHHHHHhhc----------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204 395 -AGLIGPLINLLQN----------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL 463 (559)
Q Consensus 395 -~~~i~~Li~lL~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l 463 (559)
..++..|+++|.+ .|+.+..-||.=|+.++.. -|+....+-+.|+=..++.++.++|++|+..|+.++
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2358899999973 3678889999999999987 456666666778888999999999999999999999
Q ss_pred HHHHHh
Q 042204 464 ENILKV 469 (559)
Q Consensus 464 ~~il~~ 469 (559)
..++..
T Consensus 472 Qklm~~ 477 (480)
T 1ho8_A 472 QAIIGY 477 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998843
No 84
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.30 E-value=0.00026 Score=79.79 Aligned_cols=339 Identities=11% Similarity=0.108 Sum_probs=185.8
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---c--hhHHHHHh
Q 042204 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQYEAAWALTNIASKT---S--EDTKVVID 183 (559)
Q Consensus 110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~~---~--~~~~~i~~ 183 (559)
+.+.+....++.++..+++ --+...+++.++++.+. .+|.. ++++..|+.||..+.+.. + +....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3455677778888888766 24567788899999999 88853 789999999999998732 2 11111111
Q ss_pred --CCCHHHH--------------HHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc----CC----HHHHHHHhchh
Q 042204 184 --HGAVPIF--------------VKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE----EA----LIPLLAQLNEH 239 (559)
Q Consensus 184 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~----g~----l~~Ll~ll~~~ 239 (559)
.+.++.+ ...-...+.+..+..+..+..+... ....+... +. +..++..- ..
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~---~~~li~~~~~~~~~l~~~l~~Ll~~~-~~ 355 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR---NRALLESDESLRELLLNAHQYLIQLS-KI 355 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH---HGGGGTSCGGGHHHHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHH---HHHHHhCCcchhHHHHHHHHHHHHhh-CC
Confidence 0111111 1111223466666666666655421 11222211 11 12233222 34
Q ss_pred hhHhHHHHHHHHHHHhhcCC--CCCcHhhH----hchHHHHHHhhccCC--------------------HhH-HH-HHHH
Q 042204 240 AKLSMLRTATWTLSNFCRGM--PRPIFEQV----RPALPVLAQLVHSND--------------------KEV-LT-DACW 291 (559)
Q Consensus 240 ~~~~~~~~a~~~L~nL~~~~--~~~~~~~~----~~~l~~L~~lL~~~d--------------------~~v-~~-~a~~ 291 (559)
.+.++...++...+.+.... ........ ..+++.++.-+..+. ++. .- ..-.
T Consensus 356 ~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd 435 (1023)
T 4hat_C 356 EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHH
Confidence 46667666665555555421 11112222 334444444333221 010 00 1112
Q ss_pred HHHHhccCCh-hHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC----
Q 042204 292 ALYFLSNGKN-DKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH---- 364 (559)
Q Consensus 292 ~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~---- 364 (559)
+|.+++.-.. +..+. +++.+.+.+.+ .++..++.+++++|.|+.+.......-.-..+++.|+.++.+
T Consensus 436 ~L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~ 510 (1023)
T 4hat_C 436 VLVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK 510 (1023)
T ss_dssp HHHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC
Confidence 3333332111 11111 23445555554 568899999999999998765432222222567788888864
Q ss_pred -CCchhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHH-------
Q 042204 365 -SHKKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIK------- 433 (559)
Q Consensus 365 -~~~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~------- 433 (559)
+ ...++..++|+++.++. ..++.... ++..|+..+.++++.++..|++++.+++..+......
T Consensus 511 d~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 511 DN-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HH-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 3 44566788999998875 23443333 4555777777778899999999999999853322210
Q ss_pred -HHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 434 -YLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 434 -~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
++- .++..+...+..-+++-+..+.+++..+++...
T Consensus 585 p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 585 PFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp CHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 123333444444566667788888888876543
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.26 E-value=0.00061 Score=77.01 Aligned_cols=386 Identities=10% Similarity=0.077 Sum_probs=216.5
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHhccCC---------CCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 042204 101 FAAMVAGVWS--DDNNLQLEATTKFRKLLSIE---------RSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169 (559)
Q Consensus 101 l~~lv~~L~s--~~~~~~~~a~~~l~~lls~~---------~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~n 169 (559)
...+...+.+ .+..++..|+..|++.+... -++.....++..+ +..+.+.+ +.+|..++.+++.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~l----l~~l~~~~-~~ir~~l~~~ia~ 111 (960)
T 1wa5_C 37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEI----VPLMISLP-NNLQVQIGEAISS 111 (960)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHH----HHHHHHSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHH----HHHHHhCC-HHHHHHHHHHHHH
Confidence 3455665543 46789999999999987531 1222333444444 44444455 7999999999999
Q ss_pred HhcCC-chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc------hhhhhh--hccCCHHHHHHHh----
Q 042204 170 IASKT-SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP------RCRDLV--LSEEALIPLLAQL---- 236 (559)
Q Consensus 170 l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~r~~i--~~~g~l~~Ll~ll---- 236 (559)
|+..+ ++.- .+.++.|++.+.+++...++.++.+|..++.... +.+..+ .-....++++.++
T Consensus 112 ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~ 186 (960)
T 1wa5_C 112 IADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVD 186 (960)
T ss_dssp HHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98731 1111 3578999999998888899999999999986321 111111 0011234444433
Q ss_pred ---chh-hh-------HhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccC------C---------HhHHHHH
Q 042204 237 ---NEH-AK-------LSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN------D---------KEVLTDA 289 (559)
Q Consensus 237 ---~~~-~~-------~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~------d---------~~v~~~a 289 (559)
... .+ ..+...++.++.++.... |..........++.+..++... | ..++..+
T Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~ 266 (960)
T 1wa5_C 187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSI 266 (960)
T ss_dssp HHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHH
Confidence 111 11 133344666666665433 2221222344556666665321 1 2467888
Q ss_pred HHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-----CCCCcchhhHHHHHHHhhcCChHHHHHHHh-CCChHH-----H
Q 042204 290 CWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-----HRSSSVLSPALQTIGHIVAGDDFQTQCIIN-CGALPY-----L 358 (559)
Q Consensus 290 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~g~l~~-----L 358 (559)
+.++..+.....+.....+. .+++.....+. ..++.++..++..+..++..... . .++. ...++. +
T Consensus 267 ~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-~-~~~~~~~~l~~li~~~i 343 (960)
T 1wa5_C 267 QELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-F-EIFNNESAMNNITEQII 343 (960)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-H-GGGCSHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-H-HHHcCchHHHHHHHHHh
Confidence 88888887555544332222 34555555553 23456777888888887753221 1 1111 012222 2
Q ss_pred HHHhcC----------------------CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh------cCCh
Q 042204 359 LVLLIH----------------------SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ------NAEI 410 (559)
Q Consensus 359 ~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~------~~~~ 410 (559)
+..+.- ......|..|..+|..++...++.+ +.. +++.+...+. +.++
T Consensus 344 ~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~~-~l~~i~~~l~~~~~~~~~~w 419 (960)
T 1wa5_C 344 LPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TNI-FLAHMKGFVDQYMSDPSKNW 419 (960)
T ss_dssp HHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HHH-HHHHHHHHHHHHHC----CH
T ss_pred HHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HHH-HHHHHHHHHHHhccCcchhH
Confidence 223211 0012567788888888876433322 111 3344444454 4577
Q ss_pred hHHHHHHHHHHHHhcCCC-H----H------HHHHHHHcCChHHHHhcCCCC---ChHHHHHHHHHHHHHHHhhhhhccc
Q 042204 411 NIKNWAAWAISNATSGGS-H----E------QIKYLVREKCIKPLCDLLPCA---NPTIVTVCLKGLENILKVGEAEKNM 476 (559)
Q Consensus 411 ~v~~~a~~aL~nl~~~~~-~----~------~~~~l~~~~~l~~L~~lL~~~---d~~v~~~~l~~l~~il~~~~~~~~~ 476 (559)
..+..|+.+++.++.++. . . ....++..-+++.| .++ .+.++..+++++..+...- .
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l----~~~~~~~p~vr~~a~~~lg~~~~~~---~-- 490 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL----TSNNIPHIILRVDAIKYIYTFRNQL---T-- 490 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH----HCSSCSCHHHHHHHHHHHHHTGGGS---C--
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh----cCCCCCCceehHHHHHHHHHHHhhC---C--
Confidence 899999999999986421 0 0 22222222233333 334 8899999999999876431 0
Q ss_pred ccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 477 DTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 477 ~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
.++.. ..++.+.....+++..|+..|...+.+|...
T Consensus 491 -------~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 491 -------KAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp -------HHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 01111 1245555555677899999999999998764
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.22 E-value=0.0005 Score=77.75 Aligned_cols=344 Identities=9% Similarity=0.037 Sum_probs=195.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc------
Q 042204 102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS------ 175 (559)
Q Consensus 102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~------ 175 (559)
..++..+.+.+..++...+..+..++..+-+... .+++|.|++.+++++ +..+..++.+|..++....
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 3566666666688888888888888765311111 458899999998877 7889999999999987321
Q ss_pred hhHHHHH--hCCCHHHHHH-------hhCCCCH---------HHHHHHHHHHHHHhC-CCchh-hhhhhccCCHHHHHHH
Q 042204 176 EDTKVVI--DHGAVPIFVK-------LLASPND---------DIREQAVWALGNVAG-DSPRC-RDLVLSEEALIPLLAQ 235 (559)
Q Consensus 176 ~~~~~i~--~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~nl~~-~~~~~-r~~i~~~g~l~~Ll~l 235 (559)
+.+..+. -....+.+++ .+.++.. ++...++.++.++.. +.+.. .+.+ ...++.+...
T Consensus 162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 239 (960)
T 1wa5_C 162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHH
Confidence 2222110 1122343333 2444321 223346666666542 22221 1111 1122333444
Q ss_pred hchh-----hh---------HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-----cCCHhHHHHHHHHHHHh
Q 042204 236 LNEH-----AK---------LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-----SNDKEVLTDACWALYFL 296 (559)
Q Consensus 236 l~~~-----~~---------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l 296 (559)
+... .+ ..+++.++.+|..+....+..-......+++.+..++. ..++.++..++..+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 4220 11 24567778888877754322112233455566666664 34678888899888887
Q ss_pred ccCChhHHHHHHH-hCcHH-----HHHHhhC-----------------------CCCCcchhhHHHHHHHhhcCChHHHH
Q 042204 297 SNGKNDKIQAVIE-AGVCP-----RLVELLG-----------------------HRSSSVLSPALQTIGHIVAGDDFQTQ 347 (559)
Q Consensus 297 ~~~~~~~~~~~~~-~g~l~-----~L~~lL~-----------------------~~~~~v~~~al~~L~nl~~~~~~~~~ 347 (559)
+.... . ..++. ...++ .++..|. +.....|..|..+|..++......
T Consensus 320 ~~~~~-~-~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 320 TRIPK-Y-FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HTSHH-H-HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred hCcHh-H-HHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 74322 1 11111 11222 2223331 111246667777887777654421
Q ss_pred HHHhCCChHHHHHHhc------CCCchhHHHHHHHHHHHhhcC---CH---H------HHHHHHHcCCHHHHHHHhhcC-
Q 042204 348 CIINCGALPYLLVLLI------HSHKKSIKNHACWTISKITAG---NR---E------QIQAVIDAGLIGPLINLLQNA- 408 (559)
Q Consensus 348 ~~~~~g~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~---~~---~------~~~~li~~~~i~~Li~lL~~~- 408 (559)
++. -+++.+...+. +. +...|..|..+++.++.+ .. . ....++. ..++..+.++
T Consensus 396 -v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~ 468 (960)
T 1wa5_C 396 -VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNN 468 (960)
T ss_dssp -HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSS
T ss_pred -HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCC
Confidence 211 23445555554 34 667888899999999752 11 0 2222221 1233334555
Q ss_pred --ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 409 --EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 409 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
++.+|..|+|+++.++..-.++.... +++.++..|.++++.|+..|..+|.+++..
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 88999999999999988654443332 677888888888899999999999998864
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.20 E-value=0.00015 Score=82.16 Aligned_cols=325 Identities=10% Similarity=0.045 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHhccC-CCCchHHHHHhcCcHHHHHHhhc---------------C-CCCHHHHHHHHHHHHHHhcCCch
Q 042204 114 NLQLEATTKFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLM---------------R-EDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 114 ~~~~~a~~~l~~lls~-~~~~~~~~ii~~g~v~~Lv~lL~---------------~-~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
..+..++.++...+.. .-+.. ....+++.+.. |. + ++ ++++..|+.++..+....+.
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence 6777788888776652 11111 33456676766 41 1 33 78999999999999984221
Q ss_pred -hHHHHHhCCCHHHHHHh-------hCCCC---HHHHHHHHHHHHHHhCCCchhhhhhh---------ccCCHHHHHHHh
Q 042204 177 -DTKVVIDHGAVPIFVKL-------LASPN---DDIREQAVWALGNVAGDSPRCRDLVL---------SEEALIPLLAQL 236 (559)
Q Consensus 177 -~~~~i~~~g~i~~L~~l-------L~~~~---~~v~~~a~~~L~nl~~~~~~~r~~i~---------~~g~l~~Ll~ll 236 (559)
.+...+. .+++.++.+ +...+ .+.....+..+..++...+. .+. ..+.+..++..+
T Consensus 278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~l 353 (971)
T 2x1g_F 278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST---LLLSGITSADPELSILVHRIVQEI 353 (971)
T ss_dssp GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH---HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH---HHHHHhccCcccccHHHHHHHHHH
Confidence 1111111 123333332 23334 26666667777666533221 111 111233333333
Q ss_pred ch--------hhhHhHHHHHHHHHHHhhcC--------CCCCcH----hhHhchHHHHHHhhccCC--------H-----
Q 042204 237 NE--------HAKLSMLRTATWTLSNFCRG--------MPRPIF----EQVRPALPVLAQLVHSND--------K----- 283 (559)
Q Consensus 237 ~~--------~~~~~~~~~a~~~L~nL~~~--------~~~~~~----~~~~~~l~~L~~lL~~~d--------~----- 283 (559)
.. ..+..+...+++.+..++.. +..... .....+++.++..+..++ +
T Consensus 354 l~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~ 433 (971)
T 2x1g_F 354 LHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLEC 433 (971)
T ss_dssp HHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHH
T ss_pred HHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHH
Confidence 21 24677888899888888651 111111 122444555554443221 1
Q ss_pred --hHHHHHHHHHHHhccCChh-HHHHHHHhCcHHHHHHhhCC-----CCCcchhhHHHHHHHhhcCChHHHHHHHhCCCh
Q 042204 284 --EVLTDACWALYFLSNGKND-KIQAVIEAGVCPRLVELLGH-----RSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL 355 (559)
Q Consensus 284 --~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l 355 (559)
..+..+..++..++....+ .... +++.+...+.+ .++..++.|+.+++.++.+...... ..+
T Consensus 434 f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l 503 (971)
T 2x1g_F 434 FRCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQI 503 (971)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHH
Confidence 2445566666666643331 1111 22333333332 5778899999999999887653321 233
Q ss_pred HHHHHHh---c--CCCchhHHHHHHHHHHHhhc--C-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204 356 PYLLVLL---I--HSHKKSIKNHACWTISKITA--G-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG 427 (559)
Q Consensus 356 ~~L~~lL---~--~~~~~~v~~~a~~~L~nl~~--~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~ 427 (559)
+.++.++ . .+ ++.+|..++|+++.++. . .++.... +++.|+..| + +.++..|++++.+++...
T Consensus 504 ~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~~-----vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 504 PRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIPP-----AINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHHH-----HHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 3333333 2 24 78999999999999975 1 2222222 466677667 2 789999999999999764
Q ss_pred CHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHHHh
Q 042204 428 SHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 428 ~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~ 469 (559)
......++ ..++..|..++.. -+.+.+..+++++..++..
T Consensus 575 ~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 575 QLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 43333332 2366677777766 3578889999999998864
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.13 E-value=0.00023 Score=78.42 Aligned_cols=300 Identities=14% Similarity=0.139 Sum_probs=204.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc---hhhhhh
Q 042204 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP---RCRDLV 223 (559)
Q Consensus 147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~r~~i 223 (559)
+++-+...+ ..-+..|+..+.++..+..... .+..+++..|.+.+.+.... +.|+.++..||.... ..--.+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455433 3445667777777766432211 11236778888888775444 999999999995432 221222
Q ss_pred hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChh
Q 042204 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKND 302 (559)
Q Consensus 224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~ 302 (559)
+ +.++.++..+ .+....++..|..++..+...-+. ..+..++|.|+..|.+. ....+..|+.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 2 3567777776 455667888888888777765432 23377899999988755 689999999999999976555
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI 381 (559)
Q Consensus 303 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl 381 (559)
+...-+ ..++|.+.+.+-+..++|...|..++..+|..-+. .. ...+|.|++.+.++ +. .-++...|+.-
T Consensus 168 ~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 168 QVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred HHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence 443322 35889999999999999999999999888762211 11 15688999999877 33 44455555544
Q ss_pred hc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHcCChHHHHhcCC-CCChHHH
Q 042204 382 TA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG-SHEQIKYLVREKCIKPLCDLLP-CANPTIV 456 (559)
Q Consensus 382 ~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~ 456 (559)
+. -+...... ++|.|.+-|......+++.++..+.||+.-- +|.....++ ..++|.+....+ ..+|+++
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHH
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHH
Confidence 32 12222221 5778888888888999999999999999743 555555533 357788877665 4799999
Q ss_pred HHHHHHHHHHHHhhhh
Q 042204 457 TVCLKGLENILKVGEA 472 (559)
Q Consensus 457 ~~~l~~l~~il~~~~~ 472 (559)
..+..++..+.+.+..
T Consensus 313 ~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 313 EVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999988777654
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.10 E-value=0.00014 Score=82.37 Aligned_cols=301 Identities=13% Similarity=0.104 Sum_probs=159.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh---C--CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204 154 EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL---A--SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228 (559)
Q Consensus 154 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 228 (559)
.+ ...++.|+.+++.++.+-.+... ..++.++.++ . ++++.++..++|+++.++..-....+.+. .+
T Consensus 476 ~~-w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~v 547 (971)
T 2x1g_F 476 TH-WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PA 547 (971)
T ss_dssp TC-CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HH
T ss_pred Cc-HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HH
Confidence 45 58899999999999986443221 2333333332 3 35899999999999998742111111111 13
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCCh-hHHH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS--NDKEVLTDACWALYFLSNGKN-DKIQ 305 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~-~~~~ 305 (559)
++.++..+ ++.+...|++++.++|+............++..+..++.. -+...+..++.+++.++...+ +...
T Consensus 548 l~~l~~~l----~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 548 INLLVRGL----NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH----HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHh----ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44445444 2678999999999999764322223345666677777776 357888899999998875421 2222
Q ss_pred HHHHh---CcHHHHHHhhCCC--CCcchhh---HHHHHHHhhcC--C-----------hHHHHHHHhCCChHHHHHHhcC
Q 042204 306 AVIEA---GVCPRLVELLGHR--SSSVLSP---ALQTIGHIVAG--D-----------DFQTQCIINCGALPYLLVLLIH 364 (559)
Q Consensus 306 ~~~~~---g~l~~L~~lL~~~--~~~v~~~---al~~L~nl~~~--~-----------~~~~~~~~~~g~l~~L~~lL~~ 364 (559)
..+.. -++..+...+... ++..+.. ++..|+.+... . ......+ -..+++.+..++..
T Consensus 624 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEM 702 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHh
Confidence 22221 1233333444333 2222233 33344433321 0 0011111 22577877777753
Q ss_pred C-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-C-HH---HHHHHHHc
Q 042204 365 S-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG-S-HE---QIKYLVRE 438 (559)
Q Consensus 365 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-~-~~---~~~~l~~~ 438 (559)
. .+..+.+.++++++.++..-.+....++.. +++.|+..+..... ..+++.++.++..- . +. ....+..
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~-~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~- 777 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITNLRSSFQPMLQD-LCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR- 777 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH-HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhccccHHH-HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-
Confidence 2 267899999999999865211111111111 33344443333221 34677777776521 2 11 1222222
Q ss_pred CChHHHHhcCCC-------CChHHHHHHHHHHHHHHHhhhh
Q 042204 439 KCIKPLCDLLPC-------ANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 439 ~~l~~L~~lL~~-------~d~~v~~~~l~~l~~il~~~~~ 472 (559)
.++..+..++.. .+++++......+..++.....
T Consensus 778 ~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~ 818 (971)
T 2x1g_F 778 EFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ 818 (971)
T ss_dssp HHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence 123333344433 3678888888888888876543
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.02 E-value=7.5e-05 Score=71.05 Aligned_cols=186 Identities=11% Similarity=0.094 Sum_probs=138.3
Q ss_pred HHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204 272 PVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN 351 (559)
Q Consensus 272 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 351 (559)
..+++-|.+.+.+.+..++.-|..+...+.+....++..+++..|+....+.+...+..++++++++....+.....+-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 44556677788888999999999966567778899999999999999999999999999999999998865543332334
Q ss_pred CCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH--------c--CCHHHHHHHhh---cCChhHHHHHHH
Q 042204 352 CGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID--------A--GLIGPLINLLQ---NAEINIKNWAAW 418 (559)
Q Consensus 352 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~--------~--~~i~~Li~lL~---~~~~~v~~~a~~ 418 (559)
...+.++..++.+. ...|.+.|...|-.++..++.....+.+ . ..++.|+.+|+ ..|.+++..|+.
T Consensus 201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 46788999999987 8999999999999998754333322221 1 24889999997 678999999999
Q ss_pred HHHHHhcCCC-HH----HHHHHHHcCChHHHHhcCCCC--ChHHHHH
Q 042204 419 AISNATSGGS-HE----QIKYLVREKCIKPLCDLLPCA--NPTIVTV 458 (559)
Q Consensus 419 aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--d~~v~~~ 458 (559)
.|..+..+.+ .+ ....+-+.|+=..+...++.. +++++.+
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8888776644 23 233444556555666666654 5565443
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.98 E-value=0.00039 Score=78.72 Aligned_cols=338 Identities=12% Similarity=0.080 Sum_probs=186.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh---CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204 152 MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL---ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228 (559)
Q Consensus 152 ~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 228 (559)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ .++++.++..++|+++.++..-......+ ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHH
Confidence 4445 7889999999999998644311 12334444433 33678899999999999874311111121 246
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCCh-hHHH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS--NDKEVLTDACWALYFLSNGKN-DKIQ 305 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~-~~~~ 305 (559)
++.++..+. + +.++..|++++.++|...+..-......+++.+..++.. -+...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l~-~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHALG-N--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHTT-C--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhC-C--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 777777773 2 678899999999999764322223446666777777765 357888999999999885443 3333
Q ss_pred HHHHhCcHHHHHHhh----CCC-CCcchh---hHHHHHHHhhcCCh----------------------HHHHHHHhCCCh
Q 042204 306 AVIEAGVCPRLVELL----GHR-SSSVLS---PALQTIGHIVAGDD----------------------FQTQCIINCGAL 355 (559)
Q Consensus 306 ~~~~~g~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~----------------------~~~~~~~~~g~l 355 (559)
..++ .+++.+...+ ... ++..+. ..+.+|+.+...-. ..... +...++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence 3332 2444444433 222 222222 34455544443210 00111 122345
Q ss_pred HHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHH----hhc-CChhHHHHHHHHHHHHhc--CC
Q 042204 356 PYLLVLLIH-SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL----LQN-AEINIKNWAAWAISNATS--GG 427 (559)
Q Consensus 356 ~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~l----L~~-~~~~v~~~a~~aL~nl~~--~~ 427 (559)
+.+..++.. ..+..+.+.++.++..++..-.+... ..+|.++.. +.. ..+ ..++.+..++. +.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence 555555532 12568888999999887541111111 123333333 222 122 23444444433 22
Q ss_pred CH---HHHHHHHHcCChHHHHhcCC---CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchH-HHHHHHHhccHHHHH
Q 042204 428 SH---EQIKYLVREKCIKPLCDLLP---CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ-YAQLVEEAEGLEKIE 500 (559)
Q Consensus 428 ~~---~~~~~l~~~~~l~~L~~lL~---~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~-~~~~i~~~g~l~~l~ 500 (559)
.+ .....+.+ .++..+..++. ..+++++......+..++......-- .... +.. + ++.+.
T Consensus 757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~------~~~~~~~~-i-----~~~~~ 823 (963)
T 2x19_B 757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL------CERLDVKA-V-----FQCAV 823 (963)
T ss_dssp CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG------CTTSCHHH-H-----HHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc------CCcccHHH-H-----HHHHH
Confidence 21 12222111 12333333332 24699999999999999976543210 0111 122 2 23444
Q ss_pred HHhcCCCHHHHHHHHHHHHhhcCC
Q 042204 501 NLQSHENNEIHEKSVKILETYWCG 524 (559)
Q Consensus 501 ~L~~~~~~~v~~~a~~il~~~f~~ 524 (559)
....+.+.++.+.+.+.+..++..
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhc
Confidence 455689999999999999887753
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.97 E-value=0.0024 Score=72.89 Aligned_cols=339 Identities=11% Similarity=0.120 Sum_probs=181.4
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCC--ch---hHHHHHh-
Q 042204 111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVE-FLMREDYPQLQYEAAWALTNIASKT--SE---DTKVVID- 183 (559)
Q Consensus 111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~-lL~~~~~~~~~~~a~~~L~nl~~~~--~~---~~~~i~~- 183 (559)
.+...+..++.++..+++- -+...+.+..+++.+.+ ++. + ++++..|+.+|..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 4567888888888887663 22344566778888873 443 4 899999999999998742 11 0111110
Q ss_pred -CCCHHHHHH-hh-------------CCCCHHHHHHHHHHHHHHhC-------CCchhhhhhhccCCHHHHHHHhchhhh
Q 042204 184 -HGAVPIFVK-LL-------------ASPNDDIREQAVWALGNVAG-------DSPRCRDLVLSEEALIPLLAQLNEHAK 241 (559)
Q Consensus 184 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~l~~Ll~ll~~~~~ 241 (559)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ..+++.++... ...+
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222222 11 12234444445555544331 111111111 11344444443 3346
Q ss_pred HhHHHHHHHHHHHhhc----CCCCC--cHhhHhchHHHHHHhhccC-------------------CH---hHHHHHHHHH
Q 042204 242 LSMLRTATWTLSNFCR----GMPRP--IFEQVRPALPVLAQLVHSN-------------------DK---EVLTDACWAL 293 (559)
Q Consensus 242 ~~~~~~a~~~L~nL~~----~~~~~--~~~~~~~~l~~L~~lL~~~-------------------d~---~v~~~a~~~L 293 (559)
.++...++..+..++. ..... .......+++.++..+..+ |. .....+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 6677777777777766 32111 1223355556655554321 11 1233344555
Q ss_pred HHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-----CC
Q 042204 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-----SH 366 (559)
Q Consensus 294 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~ 366 (559)
..++...... ++. -+.+.+...+.. .++..++.+++++|.++.+.......-.-..+++.|..+... +
T Consensus 438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 5555322221 111 123445555543 567788999999999986543321111111344455554332 2
Q ss_pred chhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH--------HHH
Q 042204 367 KKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI--------KYL 435 (559)
Q Consensus 367 ~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l 435 (559)
.+.++..++|+++.++. ..++.... +++.|+..+.++++.++..|++++.+++........ .++
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 45566679999998864 22332222 566788888888899999999999999985432221 111
Q ss_pred HHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204 436 VREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470 (559)
Q Consensus 436 ~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~ 470 (559)
..++..+..++..-+.+-...+.+++..++...
T Consensus 588 --~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 588 --QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp --HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 123444444555555555666777777776543
No 93
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.95 E-value=0.00012 Score=69.68 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=142.6
Q ss_pred HHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204 314 PRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393 (559)
Q Consensus 314 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li 393 (559)
..+++.|.+.+...+..++.-|..+...+......++..+++..|+.+.... +...+..+..++.++..+ ......++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchh
Confidence 3455556667777888999999997766777888999999999999999998 999999999999999764 44555555
Q ss_pred -HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH--------Hc--CChHHHHhcCC---CCChHHHHHH
Q 042204 394 -DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLV--------RE--KCIKPLCDLLP---CANPTIVTVC 459 (559)
Q Consensus 394 -~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~--~~l~~L~~lL~---~~d~~v~~~~ 459 (559)
...++..++.++.+.+..|.+.|+..|..++...+ .....+. .. .-++.|+.+|. ..|.++...+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 34578888888888889999999999999987642 1111111 11 23778999996 6789999999
Q ss_pred HHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC--CHHHHH
Q 042204 460 LKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE--NNEIHE 512 (559)
Q Consensus 460 l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~--~~~v~~ 512 (559)
+..|..++...+..+ ....+...+++.|.-..+..++... ++++.+
T Consensus 278 mtLIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 278 VTLINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 999999987754321 1235778889899888888866554 556544
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.87 E-value=0.023 Score=64.73 Aligned_cols=354 Identities=10% Similarity=0.083 Sum_probs=188.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcc---C-CCC---chH-----HHHHh--cCcHHHHHHhhcCCCCHHHHHHHHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLS---I-ERS---PPI-----EEVIQ--SGVVPRFVEFLMREDYPQLQYEAAW 165 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls---~-~~~---~~~-----~~ii~--~g~v~~Lv~lL~~~~~~~~~~~a~~ 165 (559)
.++.+++.++ .+...+..++..|+.+.. . ... ..+ +.+.. ..+++.+..++....++.++..++.
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5677888776 444444455555554421 1 000 000 11221 1234444555655444789999999
Q ss_pred HHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCC--ch---hhhhhhccCCHHHHHHHhc--
Q 042204 166 ALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDS--PR---CRDLVLSEEALIPLLAQLN-- 237 (559)
Q Consensus 166 ~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~r~~i~~~g~l~~Ll~ll~-- 237 (559)
++.+....-+ ...+.+...++.+.+ ++ .+++++..|+.+|..+.... +. ....+.. .++.++..+.
T Consensus 218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~s 291 (1049)
T 3m1i_C 218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATS 291 (1049)
T ss_dssp HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHh
Confidence 9998776333 233566677777773 44 37899999999999998652 21 1111110 1122222110
Q ss_pred ---------------hhhhHhHHHHHHHHHHHhhcCC------CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204 238 ---------------EHAKLSMLRTATWTLSNFCRGM------PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL 296 (559)
Q Consensus 238 ---------------~~~~~~~~~~a~~~L~nL~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 296 (559)
.+.+.+.....+..+..+.... +.........+++.++.+...++.++...++.....+
T Consensus 292 i~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l 371 (1049)
T 3m1i_C 292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL 371 (1049)
T ss_dssp TCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred hCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1224444455555554433210 1111223455677777777778888888888777666
Q ss_pred cc----CC--hhHHHHHHHhCcHHHHHHhhCCCCCc----------------------chhhHHHHHHHhhcCChHHHHH
Q 042204 297 SN----GK--NDKIQAVIEAGVCPRLVELLGHRSSS----------------------VLSPALQTIGHIVAGDDFQTQC 348 (559)
Q Consensus 297 ~~----~~--~~~~~~~~~~g~l~~L~~lL~~~~~~----------------------v~~~al~~L~nl~~~~~~~~~~ 348 (559)
++ .. ......++. .+++.++..+..++.. .+..+..+|..++.-.....-.
T Consensus 372 ~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~ 450 (1049)
T 3m1i_C 372 VADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE 450 (1049)
T ss_dssp HHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 11 111122222 2455666655432110 0112344555554322221111
Q ss_pred HHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHH-HHHHHHcCCHHHHHHHhhc-----CChhHHHHHHHHHH
Q 042204 349 IINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGNREQ-IQAVIDAGLIGPLINLLQN-----AEINIKNWAAWAIS 421 (559)
Q Consensus 349 ~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~li~~~~i~~Li~lL~~-----~~~~v~~~a~~aL~ 421 (559)
-+.+.+...+.. ..+...+..|+|+++.++.+.... ...++. .+++.|..+... +.+.++..++|+++
T Consensus 451 ----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 451 ----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp ----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 123444555543 226678899999999997632222 112121 144455554321 23455557889999
Q ss_pred HHhcC--CCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204 422 NATSG--GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE 471 (559)
Q Consensus 422 nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~ 471 (559)
.++.. ..++... .+++.|...+.++++.|+..|..+|.++++...
T Consensus 526 ry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 526 QYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 77643 1222222 257778888888899999999999999997643
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.76 E-value=0.001 Score=75.32 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=184.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFL---MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL---~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g 185 (559)
.+.++..+..++.++..+...-.... ...++.++..+ .+++ +.++..++|+++.++..-..... .. ..
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~~-~l-~~ 529 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHPV-MI-NS 529 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCHH-HH-TT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCHH-HH-HH
Confidence 55678888888888988765421111 12334444433 2344 89999999999998863222222 22 37
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh----ch-hhhHhHHHHHHHHHHHhhcCCC
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL----NE-HAKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll----~~-~~~~~~~~~a~~~L~nL~~~~~ 260 (559)
+++.++..|.+ +.++..|+++|.+++.+. +..+. ..++.++..+ .. ..+...+..+..++..++...+
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 88999998865 789999999999999542 33322 3345554443 22 1245667778888888876543
Q ss_pred -CCcHhhHhchHHHHHHhhc----cC-CHhHHH---HHHHHHHHhccC----Ch------------------hHHHHHHH
Q 042204 261 -RPIFEQVRPALPVLAQLVH----SN-DKEVLT---DACWALYFLSNG----KN------------------DKIQAVIE 309 (559)
Q Consensus 261 -~~~~~~~~~~l~~L~~lL~----~~-d~~v~~---~a~~~L~~l~~~----~~------------------~~~~~~~~ 309 (559)
.........+++.+...+. .. +++.+. ..+.+|+.+... .+ ..... +.
T Consensus 603 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 681 (963)
T 2x19_B 603 VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VL 681 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HH
Confidence 2222333445555444432 22 444433 344444433311 00 01111 22
Q ss_pred hCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh----cCCCchhHHHHHHHHHHHhhc
Q 042204 310 AGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL----IHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 310 ~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~ 383 (559)
..+++.+..++.. .+..+.+.++.+++.++..-..... ..++.++..+ .....+ ..+++++.++.
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~ 752 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHH
Confidence 2345555555532 3557888888888887642221111 2234433333 221022 34555555544
Q ss_pred --CCH----HHHHHHHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC-----ChHHHHhcCC
Q 042204 384 --GNR----EQIQAVIDAGLIGPLINLLQN---AEINIKNWAAWAISNATSGGSHEQIKYLVREK-----CIKPLCDLLP 449 (559)
Q Consensus 384 --~~~----~~~~~li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-----~l~~L~~lL~ 449 (559)
+.. +.+..+++. ++..++.++.. .+++++......+..+........ .... +++.++..++
T Consensus 753 ~f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----~~~~~~~~~i~~~~~~~l~ 827 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----LCERLDVKAVFQCAVLALK 827 (963)
T ss_dssp HHTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG----GCTTSCHHHHHHHHHHHTT
T ss_pred HhCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH----cCCcccHHHHHHHHHHHcC
Confidence 221 233333332 44555555542 368999999999988886432111 1111 3445566678
Q ss_pred CCChHHHHHHHHHHHHHHHh
Q 042204 450 CANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 450 ~~d~~v~~~~l~~l~~il~~ 469 (559)
..++.+...++..+..++..
T Consensus 828 ~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 828 FPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CSCHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999998865
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.65 E-value=0.02 Score=64.55 Aligned_cols=389 Identities=6% Similarity=0.037 Sum_probs=198.9
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 042204 111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185 (559)
Q Consensus 111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g 185 (559)
.++..+..++++++.++..- .+....-.-..++|.|+.++.. +. +.++..++|+++.++.--......+ ..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~~L--~~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFL--RT 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHHHH--HH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHHHH--HH
Confidence 57999999999999976442 2222222223467788888763 22 4456678899998776322222221 13
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc------cCCHHHHHHHhch---hhhHhHHHHHHHHHHHhh
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS------EEALIPLLAQLNE---HAKLSMLRTATWTLSNFC 256 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~l~~Ll~ll~~---~~~~~~~~~a~~~L~nL~ 256 (559)
++..|+..+..+++.++..|+|++.+||.+ ++..+.. ...++.++..+.. .-+..-...+..+++.+.
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 566677777778899999999999999964 4444422 1235555544422 224455567788888888
Q ss_pred cCCCCCc--HhhHhchHHHHH----Hhhc--cC------C---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204 257 RGMPRPI--FEQVRPALPVLA----QLVH--SN------D---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL 319 (559)
Q Consensus 257 ~~~~~~~--~~~~~~~l~~L~----~lL~--~~------d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 319 (559)
...+... ...+..+++.+. .+.. +. | .......+.++..++..-.......+. .+.+.++++
T Consensus 618 ~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~ 696 (1023)
T 4hat_C 618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQL 696 (1023)
T ss_dssp TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHH
T ss_pred HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHH
Confidence 8764332 112222333222 2221 01 1 123344455544444221111101110 122222222
Q ss_pred hCC------------CCC-----------cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc----CC----Cch
Q 042204 320 LGH------------RSS-----------SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI----HS----HKK 368 (559)
Q Consensus 320 L~~------------~~~-----------~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~----~~----~~~ 368 (559)
.+. +.. .++..+++.+...+...+.. + .+...+++.|+..+- .. .++
T Consensus 697 y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~ 774 (1023)
T 4hat_C 697 YRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDARDA 774 (1023)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGGCCH
T ss_pred HHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhhccH
Confidence 110 111 12222333333222211111 1 122245666655442 11 023
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhcCCC-------HHHHHHHHHc
Q 042204 369 SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN---AEINIKNWAAWAISNATSGGS-------HEQIKYLVRE 438 (559)
Q Consensus 369 ~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~~~~-------~~~~~~l~~~ 438 (559)
.+-.-..-.+..+...-.+.+..++++ ++..=++++.. +.|+.+..-...+.++...+. ++..+.
T Consensus 775 ~vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~---- 849 (1023)
T 4hat_C 775 EVLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL---- 849 (1023)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH----
Confidence 333333344444433334445555554 66666777765 367888777777777665432 222222
Q ss_pred CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH----HHHHhcCCCHHHHHHH
Q 042204 439 KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK----IENLQSHENNEIHEKS 514 (559)
Q Consensus 439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~----l~~L~~~~~~~v~~~a 514 (559)
+++.++--++++.+++...++..+..++......+ ..++...+-+.-+++. +.-+.+....-..+.-
T Consensus 850 -~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~ 920 (1023)
T 4hat_C 850 -FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG--------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ 920 (1023)
T ss_dssp -HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC--------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred -HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 34455556789999999999999999887655321 1123444444444444 3334455554455555
Q ss_pred HHHHHhhcC
Q 042204 515 VKILETYWC 523 (559)
Q Consensus 515 ~~il~~~f~ 523 (559)
..++...|.
T Consensus 921 ~~~l~~l~~ 929 (1023)
T 4hat_C 921 ALLLMKLIS 929 (1023)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666555
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.64 E-value=0.00042 Score=77.89 Aligned_cols=304 Identities=11% Similarity=0.034 Sum_probs=163.0
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHHHhCCC
Q 042204 109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS--EDTKVVIDHGA 186 (559)
Q Consensus 109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--~~~~~i~~~g~ 186 (559)
.+.++.....++.++...++ --+...++..++++.+.++|.. ++++..|+.||..|..... +.+..++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 34678888899999999876 3456777888899999999975 7999999999999988543 22223332201
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHHhC------CCc-----hhhhhh--hccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204 187 VPIFVKLLA--SPNDDIREQAVWALGNVAG------DSP-----RCRDLV--LSEEALIPLLAQLNEHAKLSMLRTATWT 251 (559)
Q Consensus 187 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~r~~i--~~~g~l~~Ll~ll~~~~~~~~~~~a~~~ 251 (559)
+...+..+. ..+.++.+..+..+..++. ..+ +.+... .-.+.++.++..+. +++.++...++..
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~-~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS-DDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT-CSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC-CCchhHHHHHHHH
Confidence 112222222 4666766555544433321 111 000000 01135666666663 3444555555555
Q ss_pred HHHhhcCC---CC----Cc--HhhHhchHHHHHHhhccC------C----------HhHHHHHHHHHHHhc-cCChhHHH
Q 042204 252 LSNFCRGM---PR----PI--FEQVRPALPVLAQLVHSN------D----------KEVLTDACWALYFLS-NGKNDKIQ 305 (559)
Q Consensus 252 L~nL~~~~---~~----~~--~~~~~~~l~~L~~lL~~~------d----------~~v~~~a~~~L~~l~-~~~~~~~~ 305 (559)
+..+.... +. .. ......+++.++.-+..+ + .+.|.... .+-..+ .-.++..-
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l 434 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS 434 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence 55444210 11 11 122344444444444321 1 12333333 222222 11221111
Q ss_pred H-HHHhCcHHHHHHhhC---CCCCcchhhHHHHHHHhhcCChHHHHHHH-hC----CChHHHHHHhc-----CCCchhHH
Q 042204 306 A-VIEAGVCPRLVELLG---HRSSSVLSPALQTIGHIVAGDDFQTQCII-NC----GALPYLLVLLI-----HSHKKSIK 371 (559)
Q Consensus 306 ~-~~~~g~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~----g~l~~L~~lL~-----~~~~~~v~ 371 (559)
. +.+ -+.+.+.+.+. +.++..++.++.+|+.++.+-......+. .. .+++.+..++. .+ .+.|+
T Consensus 435 ~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~ 512 (980)
T 3ibv_A 435 SYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQ 512 (980)
T ss_dssp HHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHH
T ss_pred HHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHH
Confidence 1 111 12222333342 24577899999999999886542111110 01 23455555554 45 78999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh------cCChhHHHHHHHHHHHHhcCCC
Q 042204 372 NHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ------NAEINIKNWAAWAISNATSGGS 428 (559)
Q Consensus 372 ~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~------~~~~~v~~~a~~aL~nl~~~~~ 428 (559)
..++|+++..+.--.. ....++.++..+- +++.+++..|+.++.+++....
T Consensus 513 ~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 513 LLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 9999999998762110 1234555555554 4567899999999999987643
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0011 Score=63.11 Aligned_cols=191 Identities=12% Similarity=0.104 Sum_probs=125.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch-HHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP-IEEVI--QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii--~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.+| +-+.|.|.++..|.+|+..+.+++....... .+... -....+.+...+.+.+ ..++..++.+|..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 445 5678999999999999999999876532111 11111 1234566677787777 89999999999988763211
Q ss_pred -----hHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHH
Q 042204 177 -----DTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATW 250 (559)
Q Consensus 177 -----~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~ 250 (559)
......-..++|.|+. .+.+....++..+..++..++...... .. +++.++..+ .+.++.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN 161 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence 1111122356787876 578888999999988888776432211 11 134444444 5667888888887
Q ss_pred HHHHhhcCC--C-CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204 251 TLSNFCRGM--P-RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299 (559)
Q Consensus 251 ~L~nL~~~~--~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 299 (559)
.|..+.... . ......+..+++.+..++.+.|+.|+..|..++..+-..
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 777776542 1 122233455677788889999999999999998877643
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.54 E-value=5.4e-05 Score=76.00 Aligned_cols=217 Identities=14% Similarity=0.143 Sum_probs=141.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch-HHHHHhcCcHHHHHHhhc---------CCCCHHHHHHHHHHHH
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP-IEEVIQSGVVPRFVEFLM---------REDYPQLQYEAAWALT 168 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii~~g~v~~Lv~lL~---------~~~~~~~~~~a~~~L~ 168 (559)
+....|+..|-++.++.+.-|+-.||.++....... +..-.+..+.-+++-.|. +.--.-+|+.|+.+|+
T Consensus 174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 356788889999999999999999999886542100 000001123333333332 1112479999999999
Q ss_pred HHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhh-ccCCHHHHHHHhchhhhHhHHHH
Q 042204 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVL-SEEALIPLLAQLNEHAKLSMLRT 247 (559)
Q Consensus 169 nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~l~~Ll~ll~~~~~~~~~~~ 247 (559)
.+ ..-+.. ..++..|+..+..+..+++..++-.|..+ .+.+. -.++++.++..| .+.+.+++..
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL-~D~DDDVRAV 318 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLL-SSPDEDIKLL 318 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHT-TCSSHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCcccHHHHH
Confidence 99 544433 35566666666788999999999999888 22222 123456666666 5667899999
Q ss_pred HHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC
Q 042204 248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS 325 (559)
Q Consensus 248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 325 (559)
|+.+|.-++ .+ .....++..+...|.+-| ..........|+.|+..+.. .......+|+|...|.|+-.
T Consensus 319 AAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtIT 389 (800)
T 3oc3_A 319 SAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVP 389 (800)
T ss_dssp HHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSH
T ss_pred HHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcH
Confidence 999999888 22 334556666666665432 11223334445554433321 11123689999999999999
Q ss_pred cchhhHHHHHHHhh
Q 042204 326 SVLSPALQTIGHIV 339 (559)
Q Consensus 326 ~v~~~al~~L~nl~ 339 (559)
+||..+++++..+.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998887
No 100
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.30 E-value=0.031 Score=62.93 Aligned_cols=295 Identities=13% Similarity=0.150 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHh--CC
Q 042204 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRF-VEFLMREDYPQLQYEAAWALTNIASKTS-EDTKVVID--HG 185 (559)
Q Consensus 110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~L-v~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~--~g 185 (559)
+.+++....++.+++.+++= -+...+++.++++.+ ..+|. + +.++..|+.||..|.+... +....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677777788888887653 356778889999988 47764 3 7999999999999987432 22222211 12
Q ss_pred CHHHHHHhh-------------CCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc-C-------CHHHHHHHhchhhhHhH
Q 042204 186 AVPIFVKLL-------------ASPNDDIREQAVWALGNVAGDSPRCRDLVLSE-E-------ALIPLLAQLNEHAKLSM 244 (559)
Q Consensus 186 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g-------~l~~Ll~ll~~~~~~~~ 244 (559)
++..+..++ ...+++....-+..+..+... ....+... + ++..++..- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 222222222 112334444455555544321 11222211 1 122223222 3456677
Q ss_pred HHHHHHHHHHhhc----CCC-----C------------CcHhhHhchHHHHHHhh----ccCC-----------------
Q 042204 245 LRTATWTLSNFCR----GMP-----R------------PIFEQVRPALPVLAQLV----HSND----------------- 282 (559)
Q Consensus 245 ~~~a~~~L~nL~~----~~~-----~------------~~~~~~~~~l~~L~~lL----~~~d----------------- 282 (559)
.+.+......|.. ..+ . .......+++..|...+ ..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 7665544333322 111 0 01111233333333322 2111
Q ss_pred ---H-----hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHH-HHHHHh
Q 042204 283 ---K-----EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQ-TQCIIN 351 (559)
Q Consensus 283 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~-~~~~~~ 351 (559)
. .+..+++..+.++. .+....+ +++.+.+.+..+ ++...+.++|++|.++..-... -..++-
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLD---YVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHC---HHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCC---HHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 1 12333433333332 2111111 345555555543 4678899999999997543322 112222
Q ss_pred CCChHHHHHHhcCCC----chhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204 352 CGALPYLLVLLIHSH----KKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424 (559)
Q Consensus 352 ~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~ 424 (559)
.+++.|+.+..++. ...++...+|+++..+. ..++.... ++..|++.+.+.++.++..|+.++..++
T Consensus 521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 46777777775441 22355667799988765 23443333 4566778888889999999999999998
Q ss_pred cCC
Q 042204 425 SGG 427 (559)
Q Consensus 425 ~~~ 427 (559)
..+
T Consensus 595 ~~C 597 (1073)
T 3gjx_A 595 QKC 597 (1073)
T ss_dssp HHT
T ss_pred HHH
Confidence 754
No 101
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.26 E-value=0.017 Score=54.51 Aligned_cols=372 Identities=17% Similarity=0.182 Sum_probs=203.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcCCC------CHHHH------HHHHHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMRED------YPQLQ------YEAAWA 166 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~~~------~~~~~------~~a~~~ 166 (559)
++-.+++.+-|.|..++-.-.| .+--..+..|+...++ -.|++-.--+++.-++ +|++. ..+..
T Consensus 189 til~~lRFiISKDt~lKd~~IW--n~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~qNpel~~LiQVvtR~FD- 265 (619)
T 3c2g_A 189 AIFIIFRFIISKDTRLKDYFIW--NNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQNPELAHLIQVIIRTFD- 265 (619)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHH-
T ss_pred hhhhhhHhhhcccceeccceee--CCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhcccCCHHHHHHHHHHHHHHH-
Confidence 3445666777777554432222 2211222233333333 2333333334444333 23332 33333
Q ss_pred HHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHH
Q 042204 167 LTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLR 246 (559)
Q Consensus 167 L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~ 246 (559)
|.++..+++...+.++...++..+....+-++.++.+.....|...+....-+. .--...++.++..+..+.+.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEE
Confidence 445666688899999999999999999999999999999999988753322211 112346788888887788889999
Q ss_pred HHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhcc-------CCHhHHHHHHH-------HHHHhcc-------------
Q 042204 247 TATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHS-------NDKEVLTDACW-------ALYFLSN------------- 298 (559)
Q Consensus 247 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~-------~L~~l~~------------- 298 (559)
.....|+|....+ |......-.++++.|...+.. .+..-+..+|. ++.|..-
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 9999999999887 444555557888888776632 12333344444 4443321
Q ss_pred CChh--HHHHHHHhCcHHHHHHhhCCCCCc------chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 042204 299 GKND--KIQAVIEAGVCPRLVELLGHRSSS------VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSI 370 (559)
Q Consensus 299 ~~~~--~~~~~~~~g~l~~L~~lL~~~~~~------v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v 370 (559)
+..+ +...+++..++.+|+..|+-+.-. +|...++..--+......- ..+++ ...+......+
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~P-----kd~~l----~VtDd~rk~NL 494 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVP-----KDGVL----NVIDENRKENL 494 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSC-----CTTGG----GCCCTTTCCCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCc-----hhhhc----cccchhhhhhh
Confidence 0111 223355667888888888765432 2333444333222211100 00111 11111101222
Q ss_pred ----HHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204 371 ----KNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC 445 (559)
Q Consensus 371 ----~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 445 (559)
...-+|+-+.=.. ...+..+.+++. .+..|+.++..-..+.+ ++..+.. ++-=.
T Consensus 495 vGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~q--VAh~~Ys------------------IsCPL 553 (619)
T 3c2g_A 495 IGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEKE--VAQYSYS------------------IDCPL 553 (619)
T ss_dssp HHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHHH--HHHTTTT------------------SCCGG
T ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHHH--HHhheee------------------ccCch
Confidence 2333455443332 356666777764 56666666654322211 1111111 22223
Q ss_pred hcCCCC--ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204 446 DLLPCA--NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521 (559)
Q Consensus 446 ~lL~~~--d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 521 (559)
++|++. .|....+++..-.+|++..+... .... ---..++-+.+|.|++|.+.|..++.+|
T Consensus 554 nlLn~nQ~KP~FI~NVL~VcDKILeHcP~~A-------------d~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 554 NLLNGNQVKPTFIHNVLVVCDKILEHCPTRA-------------DIWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHCTTHH-------------HHSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred hhhcccccChHHHHHHHHHHHHHHHhCcchh-------------ccce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 456543 47777778877778886654321 1110 0124567889999999999998888765
No 102
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.18 E-value=0.0076 Score=67.72 Aligned_cols=306 Identities=9% Similarity=-0.005 Sum_probs=163.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh--hhhccCCHHH
Q 042204 154 EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD--LVLSEEALIP 231 (559)
Q Consensus 154 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~--~i~~~g~l~~ 231 (559)
.+ +.++..++.+|......- ....+++.+.++.+..+|.+ ++++..|+.+|..|........+ .++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 899999999999998842 24566677888999988875 79999999999999854432111 1111100111
Q ss_pred HHHHhch-hhhHhHHHHHHHHHHHhh------cCCCC--------CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204 232 LLAQLNE-HAKLSMLRTATWTLSNFC------RGMPR--------PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL 296 (559)
Q Consensus 232 Ll~ll~~-~~~~~~~~~a~~~L~nL~------~~~~~--------~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 296 (559)
.+..+.. ..|.+..+..+..+..++ ...+. .......+.++.++.++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 1111111 345555444333332221 22221 01134467889999999888888877766665544
Q ss_pred ccC-----C----hhHHHHHHHhCcHHHHHHhhCCCCC----------------cchhhHHHHHHHhhcCChHHHHH-HH
Q 042204 297 SNG-----K----NDKIQAVIEAGVCPRLVELLGHRSS----------------SVLSPALQTIGHIVAGDDFQTQC-II 350 (559)
Q Consensus 297 ~~~-----~----~~~~~~~~~~g~l~~L~~lL~~~~~----------------~v~~~al~~L~nl~~~~~~~~~~-~~ 350 (559)
... . ......++. .+++.++..+..++. ..|....-.+..++.-.+...-. +.
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 421 0 111122222 245555555554321 01222221111111111111111 00
Q ss_pred hCCChHHHHHHhc---CCCchhHHHHHHHHHHHhhcCCHHHHHHHH-Hc----CCHHHHHHHhh-----cCChhHHHHHH
Q 042204 351 NCGALPYLLVLLI---HSHKKSIKNHACWTISKITAGNREQIQAVI-DA----GLIGPLINLLQ-----NAEINIKNWAA 417 (559)
Q Consensus 351 ~~g~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~li-~~----~~i~~Li~lL~-----~~~~~v~~~a~ 417 (559)
+ -+.+.+...+. +. +-..++.+..+++.++.+-........ .. .+++.|..++. ..++.++..++
T Consensus 439 ~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~ 516 (980)
T 3ibv_A 439 S-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYM 516 (980)
T ss_dssp H-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHH
T ss_pred H-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 0 11122223332 22 456678888999998765222111000 00 13455555555 56789999999
Q ss_pred HHHHHHhcCCC--HHHHHHHHHcCChHHHHh--cCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204 418 WAISNATSGGS--HEQIKYLVREKCIKPLCD--LLPCANPTIVTVCLKGLENILKVGEA 472 (559)
Q Consensus 418 ~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~--lL~~~d~~v~~~~l~~l~~il~~~~~ 472 (559)
++++..+..-. ++.... +++.+++ -+.+++++++..|..++.++.+....
T Consensus 517 ~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 517 EILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 99999876421 121111 3444555 55567889999999999999877543
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.13 E-value=0.022 Score=54.19 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=141.5
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh----hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR----DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r----~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL 255 (559)
.+...+.+..|+..|..-+-+.|..+..++.++.......+ +.+.. -...+..++..-.++++.-.+...|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 44556888999999999899999999999999986654322 22222 1223333332233455555566666666
Q ss_pred hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCCCCCcchhhHH
Q 042204 256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGHRSSSVLSPAL 332 (559)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al 332 (559)
++...-.......+.+-.+.+.+..++-++..+|..++..+..........++.. .++.....+|.+++--.+..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 6654323333334555667778888999999999999999886666555555554 3577788889999888999999
Q ss_pred HHHHHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 333 QTIGHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 333 ~~L~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
..||.+...... .+..+-+..-+..++.+|++. +..++-+|..+.--+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999875332 233333446688899999999 99999999999888877
No 104
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.13 E-value=0.2 Score=56.32 Aligned_cols=312 Identities=13% Similarity=0.122 Sum_probs=167.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHH-HHhhCCCCHHHHHHHHHHHHHHhCCC-chhhh
Q 042204 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIF-VKLLASPNDDIREQAVWALGNVAGDS-PRCRD 221 (559)
Q Consensus 144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~ 221 (559)
++.+..+|....++++...++.+|+...+--+ ...+++.+.++.+ ..+|. +++++..|+.||..|.+.. +.+.+
T Consensus 208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 208 FQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHH
Confidence 33344455445458888889999999988533 4567888899988 46664 6789999999999998643 22222
Q ss_pred hhhccCCHHHHH----HHh------------chhhhHhHHHHHHHHHHHhhcCCC-----CCc-HhhHhchHHHHHHhhc
Q 042204 222 LVLSEEALIPLL----AQL------------NEHAKLSMLRTATWTLSNFCRGMP-----RPI-FEQVRPALPVLAQLVH 279 (559)
Q Consensus 222 ~i~~~g~l~~Ll----~ll------------~~~~~~~~~~~a~~~L~nL~~~~~-----~~~-~~~~~~~l~~L~~lL~ 279 (559)
.+.. .+..++ .++ ....+.+.....+..+..+..... .+. ......++..++.+-.
T Consensus 284 ~~~~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~ 361 (1073)
T 3gjx_A 284 QFET--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE 361 (1073)
T ss_dssp HHHH--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHH--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence 2211 111111 111 122345666666777766554320 011 1222334455566666
Q ss_pred cCCHhHHHHHHHHHHHhcc----CC------------------hhHH---HHHHHhCcHHHHHHhhCCCCC---------
Q 042204 280 SNDKEVLTDACWALYFLSN----GK------------------NDKI---QAVIEAGVCPRLVELLGHRSS--------- 325 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~----~~------------------~~~~---~~~~~~g~l~~L~~lL~~~~~--------- 325 (559)
.+|.++...++..=..+.. .. +.+. ..++. .+...++..|..+++
T Consensus 362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~-~L~~vlI~~m~~P~ev~i~e~e~g 440 (1073)
T 3gjx_A 362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS-KVRLLMVSRMAKPEEVLVVENDQG 440 (1073)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH-HHHHHHHHTCCCSCCEEEEECSSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHH-HHHHHHHHhcCCCccccccCcccc
Confidence 7788887665544222221 10 0111 11111 233344444443321
Q ss_pred c-chh---h--------HHH-HHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcC-CHHHHH
Q 042204 326 S-VLS---P--------ALQ-TIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAG-NREQIQ 390 (559)
Q Consensus 326 ~-v~~---~--------al~-~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~ 390 (559)
. +|+ . +++ ++..++.-....+..+ .++.|...+... .+......+||+++.++.. .++.-.
T Consensus 441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~ 516 (1073)
T 3gjx_A 441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 516 (1073)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCccccc
Confidence 1 111 0 111 2222222111111111 233444444432 1567889999999999743 332222
Q ss_pred HHHHcCCHHHHHHHhhcC---C--hhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204 391 AVIDAGLIGPLINLLQNA---E--INIKNWAAWAISNATSGG--SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL 463 (559)
Q Consensus 391 ~li~~~~i~~Li~lL~~~---~--~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l 463 (559)
.++- .+++.|+.+.... + ..++..++|.++.....- .++.... ++..|.+.+...++.++..|+.++
T Consensus 517 ~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af 590 (1073)
T 3gjx_A 517 RFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTF 590 (1073)
T ss_dssp HHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred chHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222 2677777777654 2 235555668887765531 2233222 567777778888999999999999
Q ss_pred HHHHHhhhh
Q 042204 464 ENILKVGEA 472 (559)
Q Consensus 464 ~~il~~~~~ 472 (559)
..+.+....
T Consensus 591 ~~i~~~C~~ 599 (1073)
T 3gjx_A 591 IKIAQKCRR 599 (1073)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHHHH
Confidence 999876554
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0044 Score=58.85 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=124.6
Q ss_pred HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc-----HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh----
Q 042204 232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI-----FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND---- 302 (559)
Q Consensus 232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~-----~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~---- 302 (559)
+-..| .+.+...+..++-.+..+....+... ........+.+...+.+.+..++..++.++..++.....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44556 67788899999988888776542211 112344556677788889999999999999888753221
Q ss_pred -HHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204 303 -KIQAVIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK 380 (559)
Q Consensus 303 -~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 380 (559)
......-..+++.|++- |.+....++..|+.++..++...... . .+++.+...+.+. ++.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11112223467878765 78888889999998887776533211 1 1245666778888 99999999888887
Q ss_pred hhc--CCHH-HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 381 ITA--GNRE-QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 381 l~~--~~~~-~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+.. |... .....+. .+++.+..++.+.++.||..|..++..+...
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 764 2110 1122222 2566788889999999999999999988764
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.03 E-value=0.0026 Score=59.15 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=117.0
Q ss_pred HHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH----HHHHH
Q 042204 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF----QTQCI 349 (559)
Q Consensus 274 L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~ 349 (559)
+...+.+.|..-...++..|.......++.....++. +++.+.-.+.+++..+...++.+|..+...-.. ....
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~- 128 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE- 128 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH-
Confidence 4455566677777777777766554333222111111 233333344567778888888888776531110 0110
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 042204 350 INCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGS 428 (559)
Q Consensus 350 ~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~ 428 (559)
-..-++|.|+.-+-++ ...+|..+-.++..+.. .++. .+++.+++-+.+.+.+++.+++..+..+.....
T Consensus 129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 0113578899988887 88899887777766643 2233 256677788889999999999999998875311
Q ss_pred HHHHHHHHHcCCh---HHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204 429 HEQIKYLVREKCI---KPLCDLLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 429 ~~~~~~l~~~~~l---~~L~~lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
.. ....+ +.+..++.+.|..|+..|+.++..+...
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11 23468 9999999999999999999999887754
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.85 E-value=0.012 Score=59.56 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=155.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh--HHHHHhCCCHHHHHHhhC--C--------CCHHHHHHHHHHHH
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED--TKVVIDHGAVPIFVKLLA--S--------PNDDIREQAVWALG 210 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~--~~~i~~~g~i~~L~~lL~--~--------~~~~v~~~a~~~L~ 210 (559)
+...|+.-|-++. .++|..|+-+|..+....... +..-.+..+.-.|+.+|. . --..|||.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4455666666777 699999999999987632211 000001122333333321 1 22568999999999
Q ss_pred HHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHH
Q 042204 211 NVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDAC 290 (559)
Q Consensus 211 nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 290 (559)
.+ ..-+.- ..++..++..+ .....+++..++-.|..+..--. ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 655442 23455555433 45578888889989998811111 1677889999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC--cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCch
Q 042204 291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS--SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKK 368 (559)
Q Consensus 291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 368 (559)
.+|.-++ .++.... ++..+-..|.+-++ .-....+..|+.+++.+... -.+...+|.|...+.|+ -.
T Consensus 321 etLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999998 2333332 34555555554321 22334566777777655321 12337899999999999 99
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHH
Q 042204 369 SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421 (559)
Q Consensus 369 ~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~ 421 (559)
.||..+..++..+. .....+.+ ..++|-..+.+++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998776 23322222 234455677888877766653
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.77 E-value=0.019 Score=53.43 Aligned_cols=132 Identities=13% Similarity=0.049 Sum_probs=94.0
Q ss_pred hhhHhHHHHHHHHHHHh----hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204 239 HAKLSMLRTATWTLSNF----CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP 314 (559)
Q Consensus 239 ~~~~~~~~~a~~~L~nL----~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 314 (559)
+++..+...++.+|..+ ......-.......++|.|+.-+.+..+.++..+-.++..+....+ ...+++
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~ 170 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTP 170 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHH
Confidence 44666666666555554 3322223333346788999999999899999888887766653111 113568
Q ss_pred HHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204 315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL---PYLLVLLIHSHKKSIKNHACWTISKITA 383 (559)
Q Consensus 315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 383 (559)
.+++-+.+.+++.+..++..++.+....... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 171 ~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 171 MLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999887532211 23568 9999999998 99999999999987754
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.77 E-value=0.11 Score=49.43 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=144.2
Q ss_pred hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH------hchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV------RPALPVLAQLVHSNDKEVLTDACWALYFL 296 (559)
Q Consensus 223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~------~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 296 (559)
+...+.+..|+..| ..-+.+.++.++.+++++.+.........+ ..++..|+.. .+++++...+-..|+..
T Consensus 74 i~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Ye~~diAl~~G~mLRec 150 (341)
T 1upk_A 74 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--YESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--GGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh--hccchhHhHHHHHHHHH
Confidence 34456677777777 566788899999999999987743332222 2222222222 34566666666666666
Q ss_pred ccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHH
Q 042204 297 SNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC---GALPYLLVLLIHSHKKSIKNH 373 (559)
Q Consensus 297 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~~v~~~ 373 (559)
.. .+.....++..+.+-.+.+.+..++-.+...|..++..+.+........++.. .+...+..+|.++ +.-.|+.
T Consensus 151 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQ 228 (341)
T 1upk_A 151 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQ 228 (341)
T ss_dssp HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred HH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHH
Confidence 64 44455667787888889999999999999999999999888776655555543 4567788889998 9999999
Q ss_pred HHHHHHHhhcC--CHHHHHHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 374 ACWTISKITAG--NREQIQAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 374 a~~~L~nl~~~--~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+...|+.+... +.......+ +..-+..++.+|.+.+..+|-+|...+.-++.+
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 99999999863 444444444 334588999999999999999999998877764
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.74 E-value=0.15 Score=46.31 Aligned_cols=185 Identities=10% Similarity=0.122 Sum_probs=124.6
Q ss_pred CHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHh-------hCCCCCc-----chhhHHHHHHHhhcCChHHHHH
Q 042204 282 DKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVEL-------LGHRSSS-----VLSPALQTIGHIVAGDDFQTQC 348 (559)
Q Consensus 282 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~l-------L~~~~~~-----v~~~al~~L~nl~~~~~~~~~~ 348 (559)
+++.++.|+.-|+.=-+..++....+... |.+..|++= +..+.-. -...|+..+..++++++ ....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpe-tr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPE-TRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTT-THHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcc-hhhH
Confidence 45567777766666544444444444443 555554332 2222111 12346666777777555 4557
Q ss_pred HHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 349 IINCGALPYLLVLLIHSH----KKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 349 ~~~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
++++.+.-.|...|+... -+-+|-.+..+++.+.. .+++.+..+++.+++|..++.++.++.-.|..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 888888888888886542 24578888889998876 6889999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHH--------cCChHHHHh-cCCCCChHHHHHHHHHHHHHHHh
Q 042204 424 TSGGSHEQIKYLVR--------EKCIKPLCD-LLPCANPTIVTVCLKGLENILKV 469 (559)
Q Consensus 424 ~~~~~~~~~~~l~~--------~~~l~~L~~-lL~~~d~~v~~~~l~~l~~il~~ 469 (559)
..+ .....++.. ..++..++. +.+.+++++.+.+..+..++.+.
T Consensus 173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 873 333333222 113433333 44678899999999988887643
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.34 E-value=0.00039 Score=64.34 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=123.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204 149 EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228 (559)
Q Consensus 149 ~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 228 (559)
.++.+++ +.+|..++..| ....|..++.++++.||..++..|. +
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------~----------- 100 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------R----------- 100 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------S-----------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------H-----------
Confidence 4456667 89999998843 1234777888999999998886421 0
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI 308 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 308 (559)
..+..++ .+++..++..+...+ +. +.+..+++++++.|+..+... +.
T Consensus 101 -~~L~~ll-~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 101 -EQLSALM-FDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp -GGGGGTT-TCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred -HHHHHHH-cCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 1233334 677888888777632 10 124456788889999888763 21
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204 309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388 (559)
Q Consensus 309 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 388 (559)
.+.+..+++++++.||..++..++ .+.+..++.++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 123446677788888888877511 13344566777 899999888652
Q ss_pred HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL 463 (559)
Q Consensus 389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l 463 (559)
..+.|..++.++++.|+..++..+. .+.|..+ ++++..|+..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1346777788999999998888753 2345556 888899888876543
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.87 E-value=0.2 Score=49.93 Aligned_cols=122 Identities=18% Similarity=0.152 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHH
Q 042204 197 PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQ 276 (559)
Q Consensus 197 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~ 276 (559)
++...+..|+..+.....+-|..++. ++..++++. .+.+..++..|+..|..+|++ ..+..+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 56888999999999998888887665 478889988 778889999999999999987 336778889999
Q ss_pred hhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204 277 LVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338 (559)
Q Consensus 277 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl 338 (559)
+|+.+++.-...+-++|..+...++.. .+..+...+..+++.+|+.++..|..-
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 999999888888878887777555422 234444444445677888888877543
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.86 E-value=0.1 Score=47.09 Aligned_cols=146 Identities=17% Similarity=0.072 Sum_probs=105.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhC-CCchhh
Q 042204 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAG-DSPRCR 220 (559)
Q Consensus 143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~r 220 (559)
.++....+.+++. .++|..|+..|+.. ... ..+++.+.. +-..++-.|++.+..+++.++. ..++.
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 4566667777777 79999999998887 311 124566666 5567889999999999999984 44431
Q ss_pred hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204 221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 300 (559)
.++.+.... .+++..+++.|+..+.--+.. + ........++|.|-.+..+++.-|+..+.|.|..++..+
T Consensus 140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 355566665 788899999988776544432 1 112233557888888888889999999999999999998
Q ss_pred hhHHHHHHHh
Q 042204 301 NDKIQAVIEA 310 (559)
Q Consensus 301 ~~~~~~~~~~ 310 (559)
++.+..+++.
T Consensus 210 Pd~V~~~~~~ 219 (240)
T 3l9t_A 210 PDLVKIELKN 219 (240)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8877666553
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.60 E-value=0.45 Score=43.25 Aligned_cols=190 Identities=13% Similarity=0.107 Sum_probs=118.1
Q ss_pred CCcchhhHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHh-------cCCC-chhHHHHHHHH---HHHhhcCCHHHHHH
Q 042204 324 SSSVLSPALQTIGHIVAGDDFQTQCIINC-GALPYLLVLL-------IHSH-KKSIKNHACWT---ISKITAGNREQIQA 391 (559)
Q Consensus 324 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~-g~l~~L~~lL-------~~~~-~~~v~~~a~~~---L~nl~~~~~~~~~~ 391 (559)
+++.|+.|+.-|+.=-..-+...-.+..+ |.+..|++=+ ..+. ....-...|.+ +-.++ ..++....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence 34457777766665443333333334433 4444443322 1110 11122233333 33343 46788888
Q ss_pred HHHcCCHHHHHHHhhcCC-----hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH
Q 042204 392 VIDAGLIGPLINLLQNAE-----INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI 466 (559)
Q Consensus 392 li~~~~i~~Li~lL~~~~-----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i 466 (559)
++++++.-.|..+|...+ ..+|-.++..++.++..++++.+.++.+.++++.....++..+.--...|...+.+|
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999998888888887543 478999999999999999999999999999999999999999988888999999999
Q ss_pred HHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 042204 467 LKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE 519 (559)
Q Consensus 467 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~ 519 (559)
+..+....-... ..+.+.....-.| ..+..+..++++.+-+....+.-
T Consensus 173 L~dd~GL~YiC~---t~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYl 220 (268)
T 2fv2_A 173 LLDDTGLAYICQ---TYERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYL 220 (268)
T ss_dssp HHSHHHHHHHTS---SHHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hccchhHHHHHc---cHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHH
Confidence 866554321111 1111222211111 23445667788887665444433
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.59 E-value=0.19 Score=45.32 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=102.3
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhc-CChHH
Q 042204 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE-LLGHRSSSVLSPALQTIGHIVA-GDDFQ 345 (559)
Q Consensus 268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~-~~~~~ 345 (559)
...++....+.+++..+++..|+..|+.+ .... .+++.+.. +-.+++..|+..+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34555566667777789999999999888 2111 24566666 5566788999999999998884 2222
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-----CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHH
Q 042204 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-----GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420 (559)
Q Consensus 346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL 420 (559)
..++.+...+.++ ++.+|+.|...+.-.+. .+++. +++.|-.+..+++..||+.+.|+|
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHH
Confidence 2567888899999 99999999877643322 12221 455566666778899999999999
Q ss_pred HHHhcCCCHHHHHHHHH
Q 042204 421 SNATSGGSHEQIKYLVR 437 (559)
Q Consensus 421 ~nl~~~~~~~~~~~l~~ 437 (559)
..++.. .|+.+..+++
T Consensus 203 rD~SK~-~Pd~V~~~~~ 218 (240)
T 3l9t_A 203 RDISKK-FPDLVKIELK 218 (240)
T ss_dssp HHHHTT-CHHHHHHHHH
T ss_pred HHHhhh-CHHHHHHHHH
Confidence 999987 6777666555
No 116
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.47 E-value=5 Score=46.15 Aligned_cols=301 Identities=10% Similarity=0.062 Sum_probs=170.5
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC--
Q 042204 99 EIFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQYEAAWALTNIASK-- 173 (559)
Q Consensus 99 ~~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~-- 173 (559)
..+..+++.+.++ +.+.+.+|-..|..+-.. + .....+...|. .+.++.+|..|+..|.+....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 4566666666555 677788888888875322 1 13344444443 333389999999999987642
Q ss_pred ---CchhHHHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHHH
Q 042204 174 ---TSEDTKVVIDHGAVPIFVKLLAS---PNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSMLR 246 (559)
Q Consensus 174 ---~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~ 246 (559)
+++.+..+ ...++..+...... ....++...+.++..|+... |.. =.+.++.++..+.. +.....
T Consensus 80 ~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~~~e 151 (1204)
T 3a6p_A 80 NGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GETQTE 151 (1204)
T ss_dssp GGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHHHHH
T ss_pred ccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHHHHH
Confidence 23333333 33455555543221 46889999999999987432 210 01346677777633 334566
Q ss_pred HHHHHHHHhhcCC---CCCcHh-------h----HhchHHHHHHhhcc-------------------CCHhHHHHHHHHH
Q 042204 247 TATWTLSNFCRGM---PRPIFE-------Q----VRPALPVLAQLVHS-------------------NDKEVLTDACWAL 293 (559)
Q Consensus 247 ~a~~~L~nL~~~~---~~~~~~-------~----~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L 293 (559)
.++.+|..++... ...... . ...+++.+..++.. .+..+...++.++
T Consensus 152 ~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l 231 (1204)
T 3a6p_A 152 LVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTL 231 (1204)
T ss_dssp HHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHH
Confidence 6777787776531 111000 0 12334444444432 1245667778888
Q ss_pred HHhccCChhHHHHHHHhC--cHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh--HHHHHHHhC---CChHHHHHHhc---
Q 042204 294 YFLSNGKNDKIQAVIEAG--VCPRLVELLGHRSSSVLSPALQTIGHIVAGDD--FQTQCIINC---GALPYLLVLLI--- 363 (559)
Q Consensus 294 ~~l~~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~~~~---g~l~~L~~lL~--- 363 (559)
.+....-+ ...+.+.. +++.+..++. ++.++..|+.+|..++.... .....++.. ..+..++..+.
T Consensus 232 ~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~ 307 (1204)
T 3a6p_A 232 AGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD 307 (1204)
T ss_dssp HTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred HHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 76654433 12333433 7777777665 56789999999999997442 211112211 11234444432
Q ss_pred ----CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc-----------CCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204 364 ----HSHKKSIKNHACWTISKITAGNREQIQAVIDA-----------GLIGPLINLLQNAEINIKNWAAWAISNATSG 426 (559)
Q Consensus 364 ----~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-----------~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~ 426 (559)
+..+.++.+..+..+..+.. ....++.. ++++.++.+..+++..+-..++.....+...
T Consensus 308 ~~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 308 GGGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145667777777777752 22333221 3577777777788878777777666656543
No 117
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.45 E-value=0.54 Score=42.88 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=94.9
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhc
Q 042204 104 MVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 104 lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~~ 172 (559)
+++.|++.. .......+..|+..+......-++.+ ..+++..|+.+|.. . ...+.+.+++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 455555432 22223345555555554333446666 46677777777653 1 125789999999999987
Q ss_pred CCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hh-hhhhh----------ccCCHHHHHHHhchh
Q 042204 173 KTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RC-RDLVL----------SEEALIPLLAQLNEH 239 (559)
Q Consensus 173 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~l~~Ll~ll~~~ 239 (559)
+......++. .+++..+...|.++++.++..++..|+.+|.... .. ...++ +..-+.+++..+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 5555565555 5678999999999999999999999999885543 11 22221 222455566666444
Q ss_pred hhHhHHHHHHHHHHHhhcCCC
Q 042204 240 AKLSMLRTATWTLSNFCRGMP 260 (559)
Q Consensus 240 ~~~~~~~~a~~~L~nL~~~~~ 260 (559)
.+.+.+..++..+..+....+
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 445555555555555555443
No 118
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.40 E-value=0.65 Score=45.84 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=103.9
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHh
Q 042204 103 AMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQYEAAWALTNIA 171 (559)
Q Consensus 103 ~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----------~~~~~~~~~a~~~L~nl~ 171 (559)
.+++.|.++- .......+..|+.-+......-++.++ .+++..|+.+|.. ......+..++.||..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4566666543 233345667777766654344567776 6678888888852 112588999999999998
Q ss_pred cCCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hh-hhhhh----------ccCCHHHHHHHhch
Q 042204 172 SKTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RC-RDLVL----------SEEALIPLLAQLNE 238 (559)
Q Consensus 172 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~l~~Ll~ll~~ 238 (559)
. +......++. ...+..|...|.++++.++..++..|+.+|.... .. ...++ +..-+.+++..+..
T Consensus 149 N-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 149 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp S-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred c-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 7 5555555555 5678999999999999999999999999996543 21 22222 23346677777754
Q ss_pred hhhHhHHHHHHHHHHHhhcCCCC
Q 042204 239 HAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 239 ~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
..+.+.+..++..+..+....+.
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHHHHHHHHcCCCC
Confidence 45556666555555556665443
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.28 E-value=0.93 Score=51.30 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=125.1
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhC-CCchhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHHhh----c
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAG-DSPRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSNFC----R 257 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~nL~----~ 257 (559)
++..+.+++.+......+ |+++|..... -.|. .+ .+..+..++... .++.++..++.+++.|. .
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt-~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC-HH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 345556666654433333 4444433221 1121 11 244555555322 23455666666665554 3
Q ss_pred CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-----C--CCcchhh
Q 042204 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-----R--SSSVLSP 330 (559)
Q Consensus 258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----~--~~~v~~~ 330 (559)
..+......+..+...+.+.+...+.+-+.-++.+|+|+.. + ..++.|.+++.. . ...++..
T Consensus 429 ~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~a 497 (1056)
T 1lsh_A 429 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAE 497 (1056)
T ss_dssp TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHH
Confidence 33332333355666667777778888889999999999973 2 245667777642 1 2347788
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-C
Q 042204 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-A 408 (559)
Q Consensus 331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~ 408 (559)
|+++|..++...+...+ +.++.++. ..+++++|..|+..|..- ..+... +..+...+.. .
T Consensus 498 Ai~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t-~P~~~~---------l~~ia~~l~~E~ 559 (1056)
T 1lsh_A 498 AIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVAL---------VSMVAVRLRREP 559 (1056)
T ss_dssp HHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHHH---------HHHHHHHHTTCS
T ss_pred HHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH-CcCHHH---------HHHHHHHHhhCc
Confidence 99999999876554433 45666763 333889999999888543 233443 3445555554 5
Q ss_pred ChhHHHHHHHHHHHHhcCCCHH
Q 042204 409 EINIKNWAAWAISNATSGGSHE 430 (559)
Q Consensus 409 ~~~v~~~a~~aL~nl~~~~~~~ 430 (559)
+..|...+...|.+++....|.
T Consensus 560 ~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 560 NLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp CHHHHHHHHHHHHHHTTCCSGG
T ss_pred hHHHHHHHHHHHHHHHhcCCcc
Confidence 7889999999999998876653
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.01 E-value=0.37 Score=43.99 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=109.0
Q ss_pred ChHHHHHHHhCCChHHHHHHhcC----C------CchhHHHHHHHHHHHhhcCCHHHHHHHHH-cCCHHHHHHHhhcCCh
Q 042204 342 DDFQTQCIINCGALPYLLVLLIH----S------HKKSIKNHACWTISKITAGNREQIQAVID-AGLIGPLINLLQNAEI 410 (559)
Q Consensus 342 ~~~~~~~~~~~g~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~ 410 (559)
+....+.+ ..+++..|+..|.. . .+.....+++.+|..+. .+......++. .+.+..|...|.++++
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 33444445 34666666666632 1 13456677888888875 45667777775 4568888888888899
Q ss_pred hHHHHHHHHHHHHhcCCC----HHHH-H------HHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204 411 NIKNWAAWAISNATSGGS----HEQI-K------YLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDT 478 (559)
Q Consensus 411 ~v~~~a~~aL~nl~~~~~----~~~~-~------~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~ 478 (559)
.++..|+..|..++.... .+.+ . ..-+..-...+++.+. ..+.+....++..+..++...+...
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~---- 186 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD---- 186 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH----
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH----
Confidence 999999988877776432 1111 1 1122345677888886 4566888888888877776544322
Q ss_pred ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 042204 479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK 513 (559)
Q Consensus 479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~ 513 (559)
.-...+..+..+|..+.|++|....++++...
T Consensus 187 ---~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 187 ---FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred ---HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 11236677889999999999999899887553
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.93 E-value=0.0053 Score=56.68 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHH
Q 042204 145 PRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVW 207 (559)
Q Consensus 145 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~ 207 (559)
+.|..++++++ +.+|..++..+ . .+.|..++++++..||..++.
T Consensus 101 ~~L~~ll~D~d-~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 101 EQLSALMFDED-REVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGGTTTCSC-HHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHH
Confidence 34666777777 78888877742 1 123555667777888877665
No 122
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.87 E-value=2.3 Score=39.09 Aligned_cols=102 Identities=8% Similarity=0.068 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
.+-.+++..+....+.+...+...+.++-..++.... .+++.++.+..+.+ .++|...+..+...+...++...
T Consensus 16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 16 KVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433378999999999976653222222 36777888766666 89999999999998865444333
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 042204 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNV 212 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 212 (559)
.+++.|..+++++++.+...++.+.+++
T Consensus 90 -----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 -----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp -----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567888899999999999999988887
No 123
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.66 E-value=0.4 Score=45.45 Aligned_cols=180 Identities=15% Similarity=0.205 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 042204 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364 (559)
Q Consensus 285 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~ 364 (559)
|...+...|.-+ -++.+.+.-++....+..+......++..+....+..|-..+.... ....- -...+|.++..+.-
T Consensus 259 VvtR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~-L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTP-LENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhcc-ccccchHHHHHhcc
Confidence 344455445444 4667788899999999999999999999998888888877765322 11101 12568888888853
Q ss_pred CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-------ChhHHHHHHHHHHHHhc------------
Q 042204 365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-------EINIKNWAAWAISNATS------------ 425 (559)
Q Consensus 365 ~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-------~~~v~~~a~~aL~nl~~------------ 425 (559)
.++.++.......|+|..++........+..|.++.|...+... +..-++.||..++|...
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm 415 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT 415 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence 33888999999999999998888777788899999999987532 33455666666666543
Q ss_pred -CC--------CHHHHHHHHHcCChHHHHhcCCCC--C-h---HHHHHHHHHHHHHH
Q 042204 426 -GG--------SHEQIKYLVREKCIKPLCDLLPCA--N-P---TIVTVCLKGLENIL 467 (559)
Q Consensus 426 -~~--------~~~~~~~l~~~~~l~~L~~lL~~~--d-~---~v~~~~l~~l~~il 467 (559)
+| +..++..+++.++++.|+.+|+-+ | + +++..++..+.-++
T Consensus 416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 11 234556667778899999988543 2 2 55566666554444
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.48 E-value=0.95 Score=42.96 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC----HHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch
Q 042204 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGA----VPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR 218 (559)
Q Consensus 144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~ 218 (559)
+..+.++++-+. +.++-++..+.-.+. ++.....+.+... +..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 345555554333 556666666666655 4555444443222 2233444443 456678899999999976643
Q ss_pred hhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHH
Q 042204 219 CRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWAL 293 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L 293 (559)
.|+.+.. ....++..+. .+.+..++..+...+.|++-.. ..........++..+..++. ..|.+....++.+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5666554 2344444442 2346677778888888887532 11122333345555555564 45899999999999
Q ss_pred HHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204 294 YFLSNGKNDKIQAVIEAGVCPRLVELLGH 322 (559)
Q Consensus 294 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~ 322 (559)
+++...+.+..+.....|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997766544433334555555444444
No 125
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.44 E-value=0.27 Score=46.72 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=70.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204 146 RFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH--GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223 (559)
Q Consensus 146 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 223 (559)
.+...+.++..|..+..++++++|+.. ++..+..+... .+++.+...+.+++..++..++..+.|++......++.-
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 444555544447789999999999999 67777776652 345556666667889999999999999984211111100
Q ss_pred hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204 224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258 (559)
Q Consensus 224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~ 258 (559)
.....+..+..++....+.+....++-+|.+|...
T Consensus 230 ~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 230 GKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 00012333334443445667777777777777764
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.33 E-value=1.8 Score=43.25 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=120.0
Q ss_pred hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204 240 AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL 319 (559)
Q Consensus 240 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 319 (559)
.+...++-|+..+.......|. ....++..++.+..++|..|+..|+..|..+|.. +.+. .+...|+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 3577888888888888877643 3356788899999999999999999999999965 3333 356889999
Q ss_pred hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc------CCHHHHHHHH
Q 042204 320 LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA------GNREQIQAVI 393 (559)
Q Consensus 320 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~li 393 (559)
|..+++.....+=.+|..+...++.. .+..+...+.++ ++.+|..+...|..-.. -+.+ .+.+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E-~E~~- 177 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKE-VEEL- 177 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHH-HHHH-
T ss_pred HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHH-HHHH-
Confidence 99888776666666666666555432 234444444445 67888887777754432 1222 1211
Q ss_pred HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH---hcCCCCChHHHHHHHHHHHHHH
Q 042204 394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC---DLLPCANPTIVTVCLKGLENIL 467 (559)
Q Consensus 394 ~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~---~lL~~~d~~v~~~~l~~l~~il 467 (559)
++..+.++|++-..+=-...+..|..+-...++.....|++ ++.... .-+...|++.+...+.++..-+
T Consensus 178 ---i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~AL 249 (507)
T 3u0r_A 178 ---ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAV 249 (507)
T ss_dssp ---HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHG
T ss_pred ---HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHH
Confidence 33344445544332222333344444444444444444332 111111 2234456666666666555544
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.32 E-value=0.53 Score=46.43 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=111.4
Q ss_pred CChHHHHHHHhCCChHHHHHHhcC----------CCchhHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhcCC
Q 042204 341 GDDFQTQCIINCGALPYLLVLLIH----------SHKKSIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQNAE 409 (559)
Q Consensus 341 ~~~~~~~~~~~~g~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~~~ 409 (559)
.+....+.+. .+++..|+.+|.. ..+...+.+++.+|..+. .+...+..++.+ ..+..|...+.+..
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~ 175 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 175 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTS
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCc
Confidence 3344555555 5667777777741 113466777888888885 456667777754 56889999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCHH----H-------HHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHHHhhhhhcccc
Q 042204 410 INIKNWAAWAISNATSGGSHE----Q-------IKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENILKVGEAEKNMD 477 (559)
Q Consensus 410 ~~v~~~a~~aL~nl~~~~~~~----~-------~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il~~~~~~~~~~ 477 (559)
+.++..|+..|..++....++ . ....-+..-...+++.|+. .+.+....++..+..++...+...
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~--- 252 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD--- 252 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH---
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH---
Confidence 999999999998887654311 1 1111234457888888876 577888888888888776554322
Q ss_pred cccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 042204 478 TAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHE 512 (559)
Q Consensus 478 ~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~ 512 (559)
.--..+..+..+|..+.+.+|....++++..
T Consensus 253 ----~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 253 ----FRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp ----HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred ----HHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 1123567788999999999998888877643
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.99 E-value=3.5 Score=46.65 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=138.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCc---HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGV---VPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~---v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 176 (559)
.+-.|++.|+.-+.+........+..- ...+....+.+...|- +..+.+++.+.. ... .+|+++|..... ...
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~-~~~ 387 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTS-AEATQIVASTLS-NQQ 387 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCH-HHHHHHHHHhhc-cCC
Confidence 445566666655544333333222210 0000122344444453 334455665544 222 335555554332 111
Q ss_pred hHHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHHHHhC----CCchhhhhhhccCCHHHHHHHhc---hhhhHhHH
Q 042204 177 DTKVVIDHGAVPIFVKLLAS----PNDDIREQAVWALGNVAG----DSPRCRDLVLSEEALIPLLAQLN---EHAKLSML 245 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~l~~Ll~ll~---~~~~~~~~ 245 (559)
... ..+..+..++.+ .++.+++.|+.++++++. ..+.+. ...++++.+.+. ...+..-.
T Consensus 388 Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~ 457 (1056)
T 1lsh_A 388 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEI 457 (1056)
T ss_dssp CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHH
T ss_pred CCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHH
Confidence 111 234556667765 567888989999888863 222221 123455555543 23345566
Q ss_pred HHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH
Q 042204 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-------NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE 318 (559)
Q Consensus 246 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 318 (559)
..++.+|.|+-.. ..++.|.+++.. ....++..|+++|..+....+..++ +.+.+
T Consensus 458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~ 519 (1056)
T 1lsh_A 458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLP 519 (1056)
T ss_dssp HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHH
T ss_pred HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHH
Confidence 7788999998652 356677777642 2356889999999999976654433 55666
Q ss_pred hh--CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204 319 LL--GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN 385 (559)
Q Consensus 319 lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 385 (559)
+. ...+.++|..|+..|.. +..+. ..+..+...+....+..|.....-.|.+++..+
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~--t~P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFE--SKPSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHH--TCCCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCChHHHHHHHHHHHH--HCcCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 66 34566788888877743 22221 125567777776558888888888888887743
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.93 E-value=2.2 Score=42.02 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=99.2
Q ss_pred HHHHHhcCCCHHH-HHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 042204 103 AMVAGVWSDDNNL-QLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWALTNIA 171 (559)
Q Consensus 103 ~lv~~L~s~~~~~-~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~ 171 (559)
.+++.|.+..... ....+..|+..+.......++.+. .+++..|+.+|.. . .....+..++.||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 4555566543222 233455666555544334466665 5677777777642 1 12578999999999998
Q ss_pred cCCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hh-hhhhh----------ccCCHHHHHHHhch
Q 042204 172 SKTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RC-RDLVL----------SEEALIPLLAQLNE 238 (559)
Q Consensus 172 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~l~~Ll~ll~~ 238 (559)
. +......++. .+++..+...|.++++.++..++..|+.+|.... .. ...++ +..-+.+++..+..
T Consensus 87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 8 5555555555 4678999999999999999999999999886543 21 22221 23345667777755
Q ss_pred hhhHhHHHHHHHHHHHhhcCCCC
Q 042204 239 HAKLSMLRTATWTLSNFCRGMPR 261 (559)
Q Consensus 239 ~~~~~~~~~a~~~L~nL~~~~~~ 261 (559)
+.+.+.+..++..+..+....+.
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred CChHHHHHHHHHHHHHHHCCCCC
Confidence 55566666666666666665543
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.56 E-value=3.2 Score=47.70 Aligned_cols=293 Identities=10% Similarity=0.046 Sum_probs=160.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHHhCC-----Cch
Q 042204 146 RFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL--ASPNDDIREQAVWALGNVAGD-----SPR 218 (559)
Q Consensus 146 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~ 218 (559)
.+...+..+.++..|.+|-..|..+-. ++ .+...+...| .+.+..+|..|+..|-|.... .++
T Consensus 16 ~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 16 AVTVMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 333444432236788888888887755 22 1333344333 456789999999999987632 222
Q ss_pred hhhhhhccCCHHHHHHHhchh------hhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHH
Q 042204 219 CRDLVLSEEALIPLLAQLNEH------AKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACW 291 (559)
Q Consensus 219 ~r~~i~~~g~l~~Ll~ll~~~------~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~ 291 (559)
.+..+. ..++..+... .+..++..++.+++.+.... | .....+++.++.++++ ++.....++.
T Consensus 86 ~k~~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 86 EKVYLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMF 155 (1204)
T ss_dssp HHHHHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHH
Confidence 222221 2344444322 34567777888888888764 3 1246778888888865 5566777888
Q ss_pred HHHHhccC-------ChhHHHH---HHHh---CcHHHHHHhhCC-------------------CCCcchhhHHHHHHHhh
Q 042204 292 ALYFLSNG-------KNDKIQA---VIEA---GVCPRLVELLGH-------------------RSSSVLSPALQTIGHIV 339 (559)
Q Consensus 292 ~L~~l~~~-------~~~~~~~---~~~~---g~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~ 339 (559)
+|..+++. ...+... .+.. .+++.+..++.. .+..++..++.++.+..
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l 235 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI 235 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 88887632 1111111 1111 123333333322 12235566777777665
Q ss_pred cCChHHHHHHHhCC--ChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHc---CCHHHHHHHhh------
Q 042204 340 AGDDFQTQCIINCG--ALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDA---GLIGPLINLLQ------ 406 (559)
Q Consensus 340 ~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~---~~i~~Li~lL~------ 406 (559)
.--+. ..+.+.. .++.+..++. ++.++..|+.+|..++.. .++....++.. ..+..++..+.
T Consensus 236 ~Wi~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~ 310 (1204)
T 3a6p_A 236 DWVSM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG 310 (1204)
T ss_dssp TTSCH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred hccCH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence 43221 2233332 6666666554 457899999999999873 24433333321 01234455432
Q ss_pred --cCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-----------cCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 407 --NAEINIKNWAAWAISNATSGGSHEQIKYLVR-----------EKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 407 --~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
+.+.++.+..+..+..+.. . ...++. .++++.+..+..+++..+...++..-..+++
T Consensus 311 ~~e~d~e~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 311 LVEKHYVFLKRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 1245677777777777652 1 111111 1246666666666666666666655444443
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.08 E-value=4.7 Score=39.42 Aligned_cols=88 Identities=9% Similarity=0.167 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204 114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL 193 (559)
Q Consensus 114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 193 (559)
+.+...+..++.++-.. ++. .-..+++.++++-.+.+ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888899999975543 332 22468999999988887 89999999999988875444432 356788889
Q ss_pred hCCCCHHHHHHHHHHHHHH
Q 042204 194 LASPNDDIREQAVWALGNV 212 (559)
Q Consensus 194 L~~~~~~v~~~a~~~L~nl 212 (559)
|.++++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9999999999999998887
No 132
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.78 E-value=2.5 Score=41.72 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=106.2
Q ss_pred HHHHHHHhCCChHHHHHHhcC----C------CchhHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhcCChhH
Q 042204 344 FQTQCIINCGALPYLLVLLIH----S------HKKSIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQNAEINI 412 (559)
Q Consensus 344 ~~~~~~~~~g~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v 412 (559)
...+.+. .+++..|+..|.. . .+.....+++.+|..+. .+......++.. ..+..|...|.+..+.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 3444443 3556666666531 1 13456777888888885 456667777754 56888888888889999
Q ss_pred HHHHHHHHHHHhcCCCHH----H-HH------HHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhccccccc
Q 042204 413 KNWAAWAISNATSGGSHE----Q-IK------YLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAI 480 (559)
Q Consensus 413 ~~~a~~aL~nl~~~~~~~----~-~~------~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~ 480 (559)
+..++..|..++....++ . .. ..-+..-...|++.+. ..+.+....++..+..++...+...
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~------ 190 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 190 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence 999988887777653311 1 11 1122345677888786 4566888888888888776654322
Q ss_pred CcchHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 042204 481 GDVNQYAQLVEEAEGLEKIENLQSHENNEIHE 512 (559)
Q Consensus 481 ~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~ 512 (559)
.-...+..+..+|..+.|++|....++++..
T Consensus 191 -~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 191 -FRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred -HHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 1233677788999999999999888887744
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=87.01 E-value=5.4 Score=37.26 Aligned_cols=148 Identities=10% Similarity=0.063 Sum_probs=93.6
Q ss_pred HHHHHHhhccC------CHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 042204 271 LPVLAQLVHSN------DKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD 342 (559)
Q Consensus 271 l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 342 (559)
+..+..++++. |......++..|..++.. -..--.+++ ..++..|+ +.....+.+++.|.++|+....++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 33444555554 455678888888888743 223233443 33444444 333455678999999999999999
Q ss_pred hHHHHHHHhC--CChHHHHHHhcC----C--CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhH
Q 042204 343 DFQTQCIINC--GALPYLLVLLIH----S--HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINI 412 (559)
Q Consensus 343 ~~~~~~~~~~--g~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v 412 (559)
+.....+.+. .++..+..-|.. + ....+++.-+.+|.-++..+.. + ....+..|.+++... +..+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHH
Confidence 9887777653 334444333322 1 1345677777888877654321 1 134667888888777 8999
Q ss_pred HHHHHHHHHHHhc
Q 042204 413 KNWAAWAISNATS 425 (559)
Q Consensus 413 ~~~a~~aL~nl~~ 425 (559)
|..++..+..+..
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999988773
No 134
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.54 E-value=19 Score=35.23 Aligned_cols=232 Identities=15% Similarity=0.082 Sum_probs=114.1
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
....++...+-.|+.++.++++.-|+..-.+|.+|-+.-...|..+.. .+-..+.+.+.......-....+.++..+..
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin 200 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 200 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence 344455567888999999999999999999999887655555544432 1122333333222222223345556666666
Q ss_pred CCCCCc-HhhHhchHHHHHHhhccCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-C--CCcchhhHH
Q 042204 258 GMPRPI-FEQVRPALPVLAQLVHSNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-R--SSSVLSPAL 332 (559)
Q Consensus 258 ~~~~~~-~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~--~~~v~~~al 332 (559)
+...+. .+...-...+|+.|-+...-.. -.....++......++..... .+-.+|++ + +..-...-+
T Consensus 201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCCCCcHHHHHHH
Confidence 552222 2233333444555554433221 122333333333333333221 12222322 1 211112233
Q ss_pred HHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc---CCHHHHHHHhhc-
Q 042204 333 QTIGHIVAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA---GLIGPLINLLQN- 407 (559)
Q Consensus 333 ~~L~nl~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~---~~i~~Li~lL~~- 407 (559)
.-|..+...- +...+.+.. .+...+...+.++ +..|.+.|..... + +.+..++.. .++|.+...|..
T Consensus 273 ~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~-hfqVAErAL~~wn-----N-e~i~~li~~n~~~IlPii~p~L~~~ 344 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWN-----N-EYIMSLISDNAAKILPIMFPSLYRN 344 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGG-----C-HHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCC-CHHHHHHHHHHhc-----c-HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444322 222222222 3566777778888 8888887765442 1 223333322 245555555422
Q ss_pred ---C-ChhHHHHHHHHHHHHhcC
Q 042204 408 ---A-EINIKNWAAWAISNATSG 426 (559)
Q Consensus 408 ---~-~~~v~~~a~~aL~nl~~~ 426 (559)
. +..++..+..++.-+...
T Consensus 345 ~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 345 SKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHHHHh
Confidence 2 567777777777766543
No 135
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=83.59 E-value=3.5 Score=33.84 Aligned_cols=78 Identities=6% Similarity=0.148 Sum_probs=53.2
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh-ccHHHHHHHhcCCC--------HHH
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA-EGLEKIENLQSHEN--------NEI 510 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~-g~l~~l~~L~~~~~--------~~v 510 (559)
+++.|..-|+.+++.++..+|.+|..++..+. ..+...+.+. ..+..+.+.+..++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs------------~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSG------------SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC------------HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCC------------HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 56677788888899999999999999886542 3345555443 22333333333333 779
Q ss_pred HHHHHHHHHhhcCCCCCCC
Q 042204 511 HEKSVKILETYWCGRVVGP 529 (559)
Q Consensus 511 ~~~a~~il~~~f~~~~~~~ 529 (559)
+++|..+++-.|+.+...+
T Consensus 118 R~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 118 RETAHETISAIFSEENGSG 136 (140)
T ss_dssp HHHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 9999999999998766543
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=83.38 E-value=2.5 Score=34.93 Aligned_cols=72 Identities=6% Similarity=0.021 Sum_probs=57.3
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~ 468 (559)
.+..|.+-|.++++.++..|+..|-.+..++.+.....+....++..|..++...++.|+..++..+.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 355567778888999999999999999988877777666666777778888777788999999988876543
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.72 E-value=3 Score=35.41 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..|.+.|++.++..++.|+..|-.++.+-......++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 47788888999999999999999999988764344566777778888899988764448999988888776664
No 138
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=81.42 E-value=32 Score=31.45 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc
Q 042204 369 SIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDL 447 (559)
Q Consensus 369 ~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 447 (559)
+.+.....-+..++.. ++.... ++++.++.+..+.+.++|+..+..|...+.. .++.... +++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~-----~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH-----VINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHH
Confidence 4555555555554432 332222 2566666666677889999999988877753 2233222 67788888
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhhcccccccCc----chHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 448 LPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD----VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 448 L~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~----~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
++++|+.+++.+..+..++....-..--. .+. ....+..+.+. -+.|-.+..+.|.-|+-.|.+.++++.
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~---~~~~~~~~~~~W~~m~~l--K~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCS---LMEPGDSAEQAWNILSLI--KAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTT---SSSCCHHHHHHHHHHHHH--HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHHH--HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 99899999999888888776553322111 011 23445555433 467777788999999999999998854
No 139
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.06 E-value=34 Score=34.03 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-----
Q 042204 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT----- 174 (559)
Q Consensus 100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~----- 174 (559)
-+-.|+..+.|+|+..+..--..|.++-.. -......+...+-..+.+++-......-..+.+++++.|..|.
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLK 240 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 240 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 355677777777777776666666655332 1222222222234455555544332344557778888887763
Q ss_pred chhHHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204 175 SEDTKVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253 (559)
Q Consensus 175 ~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~ 253 (559)
.+.+..+ ...|+.+.+.+. .....+-..++..+...+|..... ++..|++.= ..++..-...-+.-+.
T Consensus 241 eehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~ele 309 (449)
T 2npp_B 241 EEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELE 309 (449)
T ss_dssp HHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHH
Confidence 2222222 234444444432 222334555555555444443222 122333221 1111111111233344
Q ss_pred HhhcCCCCCcHh-hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCC-----CC
Q 042204 254 NFCRGMPRPIFE-QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGH-----RS 324 (559)
Q Consensus 254 nL~~~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~-----~~ 324 (559)
.+....+...+. ....+...+...+.+.+..|.+.|+.... ++ .+-.++.. .++|.+..-|.. =+
T Consensus 310 eile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~-~i~~li~~n~~~IlPii~p~L~~~s~~HWn 383 (449)
T 2npp_B 310 EILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWN 383 (449)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHTSCTTCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CH-HHHHHHHhchhhhHHhhHHHHHHHHHHhcC
Confidence 444433222222 33567777888888999999888864432 12 22222221 255766665533 24
Q ss_pred CcchhhHHHHHHHhhcCChHH
Q 042204 325 SSVLSPALQTIGHIVAGDDFQ 345 (559)
Q Consensus 325 ~~v~~~al~~L~nl~~~~~~~ 345 (559)
..++..|..++.-+...+...
T Consensus 384 ~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 384 KTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp TTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHH
Confidence 568888888888777766643
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.93 E-value=3.6 Score=34.90 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=53.0
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKIL 518 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il 518 (559)
++..|..-|.+.++.++..+|..|..+++.... .+...+..-..++.+..+... .++.|++++..+|
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~------------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK------------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH------------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH------------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 455666667889999999999999999876432 355556556666777666544 7789999999999
Q ss_pred Hhhc
Q 042204 519 ETYW 522 (559)
Q Consensus 519 ~~~f 522 (559)
+.+-
T Consensus 121 ~~W~ 124 (163)
T 1x5b_A 121 VEWS 124 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 141
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.42 E-value=6.4 Score=36.78 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=86.1
Q ss_pred chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh--cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc--CCHHHHH
Q 042204 327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL--IHSHKKSIKNHACWTISKITAGNREQIQAVIDA--GLIGPLI 402 (559)
Q Consensus 327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~--~~i~~Li 402 (559)
....|+..|.-++..-....+ ++.+. ...|..++ ... .+.+++.|+.+|+.....+|..+..+.+. .++..++
T Consensus 44 ~le~aLD~L~ElSHDi~~G~K-I~~~e-f~lL~nL~~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYK-IITHE-FALLANLSLNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHH-HHHHH-HHHHHHHHHCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhH-HHhCc-HHHHHHHHhhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 345677777777764443333 33211 33343333 334 67899999999999999999999988753 4555555
Q ss_pred HHhhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC--ChHHHHHHHHHHHHHHH
Q 042204 403 NLLQN-------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA--NPTIVTVCLKGLENILK 468 (559)
Q Consensus 403 ~lL~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~~l~~l~~il~ 468 (559)
.-|.. ...-+++.-+.+|.-|+... .. + ....+..|..++... ++.++..++..+..++.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS--ED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 55443 23466777788888887753 11 1 133456666666555 89999999999999885
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.13 E-value=2.7 Score=34.68 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..+.+.|++.++..++.|+..|..++..-......++....++..++.+++..+ +.++..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 467778888888888889998888888776543344555656667778888887666 8888888887776654
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=80.11 E-value=50 Score=32.86 Aligned_cols=235 Identities=14% Similarity=0.067 Sum_probs=122.3
Q ss_pred chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
+......++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+.++..
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3334555666788899999999999999999999988876655555554321 223344444322222334456667777
Q ss_pred hhcCCCCC-cHhhHhchHHHHHHhhccCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcch--h
Q 042204 255 FCRGMPRP-IFEQVRPALPVLAQLVHSNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVL--S 329 (559)
Q Consensus 255 L~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~--~ 329 (559)
+..+...+ ..+...-...+|+.|.+...-.. -.....++......++..... .+-.+|++ +..... .
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~Kev 302 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEV 302 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH--------HHHHHHHhCCCCCchHHH
Confidence 77776322 22333334455555555443222 122223333333333333221 22222332 211122 2
Q ss_pred hHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc---CCHHHHHHHh
Q 042204 330 PALQTIGHIVAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA---GLIGPLINLL 405 (559)
Q Consensus 330 ~al~~L~nl~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~---~~i~~Li~lL 405 (559)
.-+.-|..+...- +...+.+.. -+...+...+.++ +..|.+.|+.... ++ .+..++.. .++|.++..|
T Consensus 303 lFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w~-----N~-~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 303 MFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHC-----CH-HHHHHHHhchhhhHHhhHHHH
Confidence 2333444444322 222222222 3566777788888 8888888765442 22 22233322 2456666655
Q ss_pred hcC-----ChhHHHHHHHHHHHHhcC
Q 042204 406 QNA-----EINIKNWAAWAISNATSG 426 (559)
Q Consensus 406 ~~~-----~~~v~~~a~~aL~nl~~~ 426 (559)
... +..++..|..++.-+...
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 321 456777777777655543
No 144
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=79.60 E-value=9.4 Score=37.27 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcc
Q 042204 396 GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN 475 (559)
Q Consensus 396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~ 475 (559)
++++.++.+-.+.+.++|+.++..|...+.. ..+.... +++.|..+|+++|+.+++.+..+..++....-.+--
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4888888888888999999999999887753 2333222 577888888899999999988888777644322110
Q ss_pred c-ccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204 476 M-DTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522 (559)
Q Consensus 476 ~-~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f 522 (559)
. +......+..+..+.+. -+.|..+..+.|.-|+-.|.+.++++.
T Consensus 137 ~~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 0 00000013455555443 467777788999999999999998854
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.26 E-value=4.4 Score=33.71 Aligned_cols=71 Identities=10% Similarity=-0.013 Sum_probs=58.9
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~~l~~l~~il 467 (559)
.+..|.+-|.++++.++..|+..|-.+..++.+.....+....++..|+.++.. .++.|+..++..+....
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 355677778899999999999999999999888888888888899999998864 46789998888877654
No 146
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=78.19 E-value=6.4 Score=43.92 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=110.9
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch---hhhHhHHHHHHHHHH--HhhcCCC
Q 042204 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE---HAKLSMLRTATWTLS--NFCRGMP 260 (559)
Q Consensus 186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~---~~~~~~~~~a~~~L~--nL~~~~~ 260 (559)
++.-|+++--+...+||..|-.+|..+...-+..+..+ ++.+++.|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 45667777788999999999999999987766666554 6788888855 344555666666554 11111 1
Q ss_pred CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC--------------------C----hhHHHH----------
Q 042204 261 RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG--------------------K----NDKIQA---------- 306 (559)
Q Consensus 261 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--------------------~----~~~~~~---------- 306 (559)
.........+++.|+.....++++++.-+-.+...+... + ...++.
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 223445567777777777777776655444333222210 0 000111
Q ss_pred -HHH--hCcHHHHHHhh-CCCC--CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204 307 -VIE--AGVCPRLVELL-GHRS--SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK 380 (559)
Q Consensus 307 -~~~--~g~l~~L~~lL-~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n 380 (559)
..+ .++...|+... .... ++....+++.+.++....+. .....++..++..+.++ .+.+|+.|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 111 12334444555 2234 67777777786666543321 11223466788888888 99999999887765
Q ss_pred hh
Q 042204 381 IT 382 (559)
Q Consensus 381 l~ 382 (559)
+.
T Consensus 363 il 364 (997)
T 1vsy_5 363 TC 364 (997)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 147
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.10 E-value=4.8 Score=33.49 Aligned_cols=72 Identities=8% Similarity=-0.044 Sum_probs=59.4
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTVCLKGLENILK 468 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~~l~~l~~il~ 468 (559)
.+..|.+-+.+.++.++..|+..|-.+..++.+.....+....++..|+.++.. .++.|+..++..+.....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 355667778889999999999999999999888887887888888889988853 567899999988877653
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.01 E-value=4.7 Score=33.56 Aligned_cols=74 Identities=11% Similarity=-0.048 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..+.+.|++.++..++.|+..|-.++.+-......++....++..|++++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999998876444556777778899999999874 1237999998888887765
No 149
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.20 E-value=5.2 Score=33.28 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..|.+.|++.++..++.|+..|-.++..-..+...++....++..|++++.. .+ +.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4778888999999999999999999988776544556777777889999999864 34 7899999988887765
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.18 E-value=6 Score=33.81 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=53.6
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQS------HENNEIHEK 513 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~------~~~~~v~~~ 513 (559)
++..|..-+.+.++.++..+|..|..+++.... .+...+..-..++.|.++.. ..+.+|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~------------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR------------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 455666777889999999999999999876432 35666666777778888764 356899999
Q ss_pred HHHHHHhh
Q 042204 514 SVKILETY 521 (559)
Q Consensus 514 a~~il~~~ 521 (559)
+..+|+.+
T Consensus 119 il~li~~W 126 (171)
T 1juq_A 119 VIELLYSW 126 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.75 E-value=3.4 Score=37.24 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
+++..|.+.|++.++..++.|+..|..++.+-......++....++..|+.+++....+.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999998887664344566666777888888888765448899988888887764
No 152
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=73.17 E-value=45 Score=32.61 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-----
Q 042204 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS----- 175 (559)
Q Consensus 101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~----- 175 (559)
+-.|+..+.|+|+..+...-..|.++-.. -......+...+-..+.+++-......-..+.+.+++.|..|..
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 44566666666666665555555554322 22222333333334455554433222334466677777766532
Q ss_pred hhHHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204 176 EDTKVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN 254 (559)
Q Consensus 176 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n 254 (559)
+.+.-+ ...|+.+-+.+. .....+-..++......+|.....+ +..+++.= ..++..-...-+.-+..
T Consensus 209 ehk~fl-----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHH-----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 222221 233344443322 2223445555555554444432221 22232221 11111111112233444
Q ss_pred hhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhh----CC-CCC
Q 042204 255 FCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELL----GH-RSS 325 (559)
Q Consensus 255 L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL----~~-~~~ 325 (559)
+....+...+ .....+...+...+.+.+-.|.+.|+.... ++ .+-.++.. .++|.+...| .. =+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cH-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 4443322222 223556677778888899888888764431 22 22222222 2455544444 22 245
Q ss_pred cchhhHHHHHHHhhcCCh
Q 042204 326 SVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 326 ~v~~~al~~L~nl~~~~~ 343 (559)
.++..+..++..+...+.
T Consensus 352 ~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCH
Confidence 677777777776665443
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=71.86 E-value=6.4 Score=33.61 Aligned_cols=74 Identities=9% Similarity=-0.034 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..|.+.|++.++..++.|+..|-.++.+-......++....++..|+.++.. ...+.++..++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999998776434556677778889999999863 1237899999988887776
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.74 E-value=25 Score=31.47 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=58.9
Q ss_pred CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHH
Q 042204 408 AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYA 487 (559)
Q Consensus 408 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~ 487 (559)
+|.....+.+..|.. ... .+.. ++..|..-|.+.++.++..+|..|..+++.... .+.
T Consensus 24 ~dw~~ileicD~I~~-~~~-~~k~--------a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~------------~f~ 81 (226)
T 3zyq_A 24 TDWESILQICDLIRQ-GDT-QAKY--------AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ------------TVH 81 (226)
T ss_dssp CCHHHHHHHHHHHHT-TSS-CHHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH------------HHH
T ss_pred cCHHHHHHHHHHHhC-CCc-cHHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch------------HHH
Confidence 355555555555542 111 2222 355566667789999999999999998876543 234
Q ss_pred HHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHhh
Q 042204 488 QLVEEAEGLEKIENLQ-SHENNEIHEKSVKILETY 521 (559)
Q Consensus 488 ~~i~~~g~l~~l~~L~-~~~~~~v~~~a~~il~~~ 521 (559)
..+..-.+++.|.++. ...+++|++++..+|+.+
T Consensus 82 ~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 82 DEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 4444455555555553 457789999999888865
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.96 E-value=5.3 Score=35.78 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
+++..|.+.|++.++..++.|+..|..++.+-......++....++..|+.++.+..++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 47778889999999999999999999887654334456666667888888888755447888888877776654
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.87 E-value=31 Score=30.64 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=48.1
Q ss_pred ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 042204 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQ-SHENNEIHEKSVKIL 518 (559)
Q Consensus 440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~-~~~~~~v~~~a~~il 518 (559)
++..|..-|.+.++.++..+|..|..+++.... .+...+..-..++.+..+. ...+.+|++++..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~------------~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA------------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH------------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344555667789999999999999999877432 2334444444555555553 356789999998888
Q ss_pred Hhh
Q 042204 519 ETY 521 (559)
Q Consensus 519 ~~~ 521 (559)
+.+
T Consensus 111 ~~W 113 (220)
T 1dvp_A 111 QTW 113 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=61.04 E-value=21 Score=29.93 Aligned_cols=74 Identities=9% Similarity=-0.006 Sum_probs=55.0
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHH-HHHhhcC--CCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPR-FVEFLMR--EDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~-Lv~lL~~--~~~~~~~~~a~~~L~nl~~ 172 (559)
.++..|.+.|+ +.++..++.|+..|..++.+-......++....++.. |++++.. .....++..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 47788888997 4889999999999998877643455666777778887 7888843 2225788888877776654
No 158
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=60.52 E-value=54 Score=31.91 Aligned_cols=193 Identities=15% Similarity=0.074 Sum_probs=97.1
Q ss_pred HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257 (559)
Q Consensus 178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~ 257 (559)
....++...+..|+.++.++++.-|+....+|..|-+.-...|..+.. .+-..+.+.+.......-...++..+..+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 344455667889999999999999999999998886655555554432 2233445555333333334456667777777
Q ss_pred CCCCC-cHhhHhchHHHHHHhhccCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204 258 GMPRP-IFEQVRPALPVLAQLVHSNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335 (559)
Q Consensus 258 ~~~~~-~~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L 335 (559)
+...+ ..+...-....|+.|.+...-.. -.....++......++.....+ +..|+..=-..+..-...-+.-|
T Consensus 246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence 76322 22333334455555554432211 1222233333333333332211 22222221112222222333444
Q ss_pred HHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204 336 GHIVAGDD-FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI 378 (559)
Q Consensus 336 ~nl~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L 378 (559)
..+...-+ ...+.+.. -+...+...+.++ +..|.+.|+...
T Consensus 321 eeiLe~~~~~~f~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 321 EEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHHHTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 44443322 22222222 4566677777777 777777776443
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=58.25 E-value=21 Score=29.14 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=52.6
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhcCCCCC--------hHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE-KCIKPLCDLLPCAN--------PTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d--------~~v~~~~l~~l~~il 467 (559)
+++.|.+-|.+.++.++..|+..|..++..+.+..+..+.+. ..|..+.+.--.+| ..|+..|-+++.-|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 566788888999999999999999999999998888776663 22444444332222 367777877777666
Q ss_pred Hh
Q 042204 468 KV 469 (559)
Q Consensus 468 ~~ 469 (559)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=56.07 E-value=55 Score=36.50 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=115.7
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHH-----HhccCChhH
Q 042204 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY-----FLSNGKNDK 303 (559)
Q Consensus 229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-----~l~~~~~~~ 303 (559)
+.-|+.+- -+.-.++++.|-.+|......-+......+..++..|-.-+...+.+-..-|+.+|. ..+..+-..
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 33444433 445678899999999988876544444444444444444334556666777777654 112112111
Q ss_pred HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH-HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204 304 IQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT-QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382 (559)
Q Consensus 304 ~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 382 (559)
. ..+++.|++....++++++.-+-.+...+..+-.... -.+++...+ .-+..+ +..+. .+........
T Consensus 214 ~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~~~~~ 282 (997)
T 1vsy_5 214 I-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAVKLAK 282 (997)
T ss_dssp H-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHHHHHT
T ss_pred H-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHHHHHH
Confidence 1 1346777777777788888777666555544221100 001111111 122222 22221 1111111111
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhh-cCC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204 383 AGNREQIQAVIDAGLIGPLINLLQ-NAE--INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC 459 (559)
Q Consensus 383 ~~~~~~~~~li~~~~i~~Li~lL~-~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~ 459 (559)
..........+ .++...|+++++ +.+ .+....++..+.++...-+.. ....++..+.+.+.++.|.++..+
T Consensus 283 ~~~r~~~~~~~-~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~~R~~a 356 (997)
T 1vsy_5 283 KKKREYYLSLL-VDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPEIIHLV 356 (997)
T ss_dssp THHHHHHHHHH-HHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHHHHHHH
Confidence 11111111111 124555667663 346 888888888877776432100 011245567777888999999999
Q ss_pred HHHHHHHHHh
Q 042204 460 LKGLENILKV 469 (559)
Q Consensus 460 l~~l~~il~~ 469 (559)
..++..++..
T Consensus 357 ~~~l~~il~~ 366 (997)
T 1vsy_5 357 VKSLLSTCNK 366 (997)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888865
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.31 E-value=26 Score=29.24 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=50.2
Q ss_pred ChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH-HHHHh---cCCCHHHHHHH
Q 042204 440 CIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK-IENLQ---SHENNEIHEKS 514 (559)
Q Consensus 440 ~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~L~---~~~~~~v~~~a 514 (559)
++..|..-|. ..++.++..++..|..+++... ..+...+..-..++. +.++. ..+...|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG------------~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG------------HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC------------HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC------------HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 3455666665 5789999999999999887642 235555666666776 55554 23457999999
Q ss_pred HHHHHhhc
Q 042204 515 VKILETYW 522 (559)
Q Consensus 515 ~~il~~~f 522 (559)
..+|+.+-
T Consensus 122 l~li~~W~ 129 (157)
T 1elk_A 122 LNLIQSWA 129 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 162
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=52.28 E-value=12 Score=34.14 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=66.5
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCCCc-hHHHHHhcCcHHHHHHhhcC----C---CCHHHHHHHHHHHHHHhcCCchhHH
Q 042204 108 VWSDDNNLQLEATTKFRKLLSIERSP-PIEEVIQSGVVPRFVEFLMR----E---DYPQLQYEAAWALTNIASKTSEDTK 179 (559)
Q Consensus 108 L~s~~~~~~~~a~~~l~~lls~~~~~-~~~~ii~~g~v~~Lv~lL~~----~---~~~~~~~~a~~~L~nl~~~~~~~~~ 179 (559)
+.+.++..++.+++.+.++.+. .. ..+.+........+++.+.+ . .+..++..++..+.|++......+.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~--~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~ 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred cCCCchhHHHHHHHHHHHcccC--CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 3466788999999999999876 33 34444333334444544422 1 1267999999999999873211111
Q ss_pred HHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHHHHhCCCchh
Q 042204 180 VVIDHGAVPIFVKLLAS---------PNDDIREQAVWALGNVAGDSPRC 219 (559)
Q Consensus 180 ~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~ 219 (559)
+......++..+.. .+++....++-+||++...++..
T Consensus 177 ---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~ 222 (253)
T 3gae_A 177 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 222 (253)
T ss_dssp ---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGG
T ss_pred ---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHH
Confidence 12233445554442 37788888999999998655443
No 163
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=51.21 E-value=31 Score=27.85 Aligned_cols=94 Identities=19% Similarity=0.098 Sum_probs=59.9
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccc
Q 042204 397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNM 476 (559)
Q Consensus 397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~ 476 (559)
++|.|+..|++.+..+...++..|...-. . +++.+.+.|.+.|..=.. +.|..+...-.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~----- 90 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIMWKY---WVIKLMIPYLI----- 90 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCC-----
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCC-----
Confidence 56789999999999988888877775321 2 345556666777766333 34433332111
Q ss_pred ccccCcchHHHHHHHHhccHHHHHHHhcC-----CCHHHHHHHHHHHHhhcC
Q 042204 477 DTAIGDVNQYAQLVEEAEGLEKIENLQSH-----ENNEIHEKSVKILETYWC 523 (559)
Q Consensus 477 ~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-----~~~~v~~~a~~il~~~f~ 523 (559)
......+ ...|+.+..+ ...++.+.|..|+++||.
T Consensus 91 -------~~~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 91 -------YPNKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp -------HHHHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred -------HHHHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 1122223 3666777665 467899999999999986
No 164
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=50.46 E-value=1.3e+02 Score=26.42 Aligned_cols=137 Identities=9% Similarity=0.003 Sum_probs=80.6
Q ss_pred HHHhhccCCHhHHHHHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204 274 LAQLVHSNDKEVLTDACWALYFLSNG-KNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIIN 351 (559)
Q Consensus 274 L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 351 (559)
+..+..++..+.+.-++..+...... .++. ++.+-..+.+ ++..+....+.+++.++...+..
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------ 124 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------ 124 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG------
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH------
Confidence 44555666777777777777765422 2221 2233333433 44555555446676665443322
Q ss_pred CCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHH
Q 042204 352 CGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE 430 (559)
Q Consensus 352 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 430 (559)
+.+.+...+.++ +.-+|+.|+..+..... ++++. +++.+-..+.+++.-|++.+.|+|..++.. .++
T Consensus 125 --~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~ 192 (220)
T 2b6c_A 125 --LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQ 192 (220)
T ss_dssp --HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHH
T ss_pred --HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHH
Confidence 245677888888 88888888764422211 22321 133333356778899999999999999987 555
Q ss_pred HHHHHHH
Q 042204 431 QIKYLVR 437 (559)
Q Consensus 431 ~~~~l~~ 437 (559)
....++.
T Consensus 193 ~v~~fl~ 199 (220)
T 2b6c_A 193 WVEELMK 199 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5444443
No 165
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=48.98 E-value=2.2e+02 Score=28.52 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCC------CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204 99 EIFAAMVAGVWSD------DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172 (559)
Q Consensus 99 ~~l~~lv~~L~s~------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 172 (559)
..++.+.+.|.++ |++.. +..+.++++. -+-+.+.+.=-+..++..|.++. +.+...|+.++.
T Consensus 73 ~ll~~Ik~iL~~~~~~~~lD~~~L---i~Ll~~il~~---~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~---- 141 (500)
T 3vld_A 73 PLLATIKRFLTSNVSYDSLNYDYL---LDVVDKLVPM---ADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE---- 141 (500)
T ss_dssp HHHHHHHHHHHCSSCCTTCCHHHH---HHHHHHHHHH---SCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCccccccCHHHH---HHHHHHHHhc---CCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc----
Confidence 3566777777322 45553 3445555543 23455566667888999999987 899999998887
Q ss_pred CCchhHHHHHhCCCHHHHHHhhCCCCHH---HHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204 173 KTSEDTKVVIDHGAVPIFVKLLASPNDD---IREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT 249 (559)
Q Consensus 173 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~ 249 (559)
.++-+..+...+++..|++++-.++.. +..+.=.++..++.+ .-.|..+.+.. + +++..++...++.+....+
T Consensus 142 -~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril~nn-l-~lL~~vK~~~~~i~~sRLL 217 (500)
T 3vld_A 142 -NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELIRRRLFDNN-L-PYLVSVKGRMETVSFVRLI 217 (500)
T ss_dssp -TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTT-H-HHHHHHHHHCCHHHHHHHH
T ss_pred -ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHHHHh-H-HHHHHHhcCCCceeHHHHH
Confidence 345567778889999999988764433 666666777777544 33455555543 3 5666665555555555455
Q ss_pred HHHHHhhcC
Q 042204 250 WTLSNFCRG 258 (559)
Q Consensus 250 ~~L~nL~~~ 258 (559)
..+.-+...
T Consensus 218 dll~il~~~ 226 (500)
T 3vld_A 218 DFLTIEFQF 226 (500)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 555544443
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.77 E-value=1.2e+02 Score=29.83 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-
Q 042204 160 QYEAAWALTNIASKTSEDTKVVIDHGAVPIFV-KLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN- 237 (559)
Q Consensus 160 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~- 237 (559)
++-++.+|+-++...+ .. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~-~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCc-hH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 6668888887776332 21 2233333 3344567888999999999997665433444433223455666552
Q ss_pred ------hhhhHhHHHHHHHHHHHhhcCC--CCCcHhhHhchHHHHHHhhc---------cCCHhHHHHHHHHHHHhccCC
Q 042204 238 ------EHAKLSMLRTATWTLSNFCRGM--PRPIFEQVRPALPVLAQLVH---------SNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 238 ------~~~~~~~~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~~ 300 (559)
...+..++..+...+.|++-.. .... ...++.+..++. ..|++....++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2235667777777888887532 1111 223344555444 358899999999999998544
Q ss_pred h
Q 042204 301 N 301 (559)
Q Consensus 301 ~ 301 (559)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.36 E-value=23 Score=34.90 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=69.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcCCchhH
Q 042204 107 GVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMRE-------DYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 107 ~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.+.+..+..++.+++.+.++.+. ......++ .......+++.+... .+..++..++..+.|++......+
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~ 347 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 347 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCC--cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc
Confidence 34456789999999999999875 34233333 223355666655321 125799999999999987321111
Q ss_pred HHHHhCCCHHHHHHhhC---------CCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 179 KVVIDHGAVPIFVKLLA---------SPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
. +...+..++.++. ..+++....++.|||++....+..+
T Consensus 348 ~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~ 395 (425)
T 3pst_A 348 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 395 (425)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 0 1234455555554 2478888899999999986544443
No 168
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=48.06 E-value=46 Score=32.42 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT 174 (559)
Q Consensus 101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 174 (559)
+-.|+..+.|+|+..+..--..|.++-.. -......+...+-..+.+++.......-..+.+++++.|..|.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 44556666666666555555555444322 1222222222333445555544332333455666666666654
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=47.82 E-value=42 Score=32.32 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-
Q 042204 160 QYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN- 237 (559)
Q Consensus 160 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~- 237 (559)
++-++.+|+-++... ... +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~-~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKL-PYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGC-SCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCC-ChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 666888888777632 221 23333443 344567888999999999997665433444432212334444441
Q ss_pred ------hhhhHhHHHHHHHHHHHhhcCC--CCCcHhhHhchHHHHHHhhc---------cCCHhHHHHHHHHHHHhccCC
Q 042204 238 ------EHAKLSMLRTATWTLSNFCRGM--PRPIFEQVRPALPVLAQLVH---------SNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 238 ------~~~~~~~~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~~ 300 (559)
...+..++..+...+.|++-.. .... ...++.+..++. ..|++....++-+|++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2235667777777888887532 1111 223344555554 358899999999999998543
Q ss_pred h
Q 042204 301 N 301 (559)
Q Consensus 301 ~ 301 (559)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.96 E-value=64 Score=29.34 Aligned_cols=107 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred hCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-------hhhhHhHHHHHHHHHHHhhcCC--CCCcH
Q 042204 194 LASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-------EHAKLSMLRTATWTLSNFCRGM--PRPIF 264 (559)
Q Consensus 194 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-------~~~~~~~~~~a~~~L~nL~~~~--~~~~~ 264 (559)
+.+.++..+-.++++++|+..+....|..+........++..+. ...+..++-.+...+.|++-.. .....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 33557788999999999998776534555554333444555442 1235667777778888887532 11111
Q ss_pred hhHhchHHHHHHhhc-----cCCHhHHHHHHHHHHHhccCC
Q 042204 265 EQVRPALPVLAQLVH-----SNDKEVLTDACWALYFLSNGK 300 (559)
Q Consensus 265 ~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l~~~~ 300 (559)
+....++..+...+. ..|++....++-+++++...+
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 222222333322211 237788888888998888533
No 171
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=45.04 E-value=3.3e+02 Score=31.20 Aligned_cols=211 Identities=11% Similarity=0.048 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH----------hhH
Q 042204 198 NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF----------EQV 267 (559)
Q Consensus 198 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~----------~~~ 267 (559)
...+.+.-+.++.++..... ..+++.++=++..+.+...++.+-.++.+..+....... ...
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 45566665666666543211 123444443332333444556666666665554422111 112
Q ss_pred hchHHHHH----HhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204 268 RPALPVLA----QLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343 (559)
Q Consensus 268 ~~~l~~L~----~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 343 (559)
...++.++ .++.+.++.++.-+.....++....+.. ....++..|+....+++..-...|+.+|..++..+.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~----~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTY----CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 33444444 4567889999988888777776554432 233456777777666665556679999998887665
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423 (559)
Q Consensus 344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl 423 (559)
...... +-.+..+++.+.+-....+|+- ..+++.++.+.+..-...++..+.-.+-+.|.+.+.+.++..+.+...+
T Consensus 471 ~~l~~~--a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~ 547 (1323)
T 3s4w_B 471 SAMRLN--AAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTM 547 (1323)
T ss_dssp HHHHHT--HHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhHH--HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHH
Confidence 432211 1123333334444323445544 6677777641100000011122333445567778888876554444333
No 172
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=42.62 E-value=1.7e+02 Score=25.65 Aligned_cols=99 Identities=6% Similarity=-0.062 Sum_probs=60.3
Q ss_pred cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204 280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL 359 (559)
Q Consensus 280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~ 359 (559)
.++..+....|.+++.+....++. +.+.+.....+++.-++..|+-.+....... .... .++.+.
T Consensus 101 ~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~--~~~~-----~~~i~~ 165 (220)
T 2b6c_A 101 KAWWDSVDAWRKFFGSWVALHLTE--------LPTIFALFYGAENFWNRRVALNLQLMLKEKT--NQDL-----LKKAII 165 (220)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSGGG--------HHHHHHHHTTCSSHHHHHHHHHTTTTCGGGC--CHHH-----HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHChHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC--CHHH-----HHHHHH
Confidence 345556555555566555333322 3456777888888777777665442222111 1111 134444
Q ss_pred HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 042204 360 VLLIHSHKKSIKNHACWTISKITAGNREQIQAVID 394 (559)
Q Consensus 360 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~ 394 (559)
.++.++ +.-|++...|+|..++..+++.....+.
T Consensus 166 ~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 166 YDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 466677 8899999999999999888887666653
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=42.21 E-value=30 Score=33.34 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=67.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhc-CcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcCCchhH
Q 042204 107 GVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMRE-------DYPQLQYEAAWALTNIASKTSEDT 178 (559)
Q Consensus 107 ~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-g~v~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~~~~~~~ 178 (559)
.+.+..+..++.+++.+.++.+. ......++.. .....+++.+... .+..++..++..+.|++......+
T Consensus 207 ~~~~~~~~n~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~ 284 (362)
T 3l3f_X 207 GLGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 284 (362)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCCCChhHHHHHHHHHHHhccC--cchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc
Confidence 34466788999999999999875 3423333322 1234445444211 125799999999999987322111
Q ss_pred HHHHhCCCHHHHHHhhC---------CCCHHHHHHHHHHHHHHhCCCchhh
Q 042204 179 KVVIDHGAVPIFVKLLA---------SPNDDIREQAVWALGNVAGDSPRCR 220 (559)
Q Consensus 179 ~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~~r 220 (559)
. +...+..+..++. ..+++....++.+||++....+..+
T Consensus 285 ~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 285 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 0 1234455666555 2578888999999999986554433
No 174
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.80 E-value=2.9e+02 Score=24.35 Aligned_cols=77 Identities=8% Similarity=0.032 Sum_probs=49.9
Q ss_pred cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 042204 312 VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA 391 (559)
Q Consensus 312 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 391 (559)
..+.+...+.+++.-++..|+-.+.......+ .. ..++.+...+.++ +.-|++...|+|..+...+++....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d--~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQKMD--EE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCC--HH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhCCC--HH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34566677777777777766554422211111 11 1234455566777 8999999999999999888888777
Q ss_pred HHHcC
Q 042204 392 VIDAG 396 (559)
Q Consensus 392 li~~~ 396 (559)
.++..
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 76543
No 175
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=27.59 E-value=79 Score=24.17 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhcC
Q 042204 487 AQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYWC 523 (559)
Q Consensus 487 ~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f~ 523 (559)
.+.+.+.+.=..+..|-.| ++++|...|..++..|-.
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 6678888888899999887 999999999999998754
No 176
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=27.52 E-value=1e+02 Score=27.40 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=77.7
Q ss_pred HHHhhccCCHhHHHHHHHHHHHhcc-CChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhH-HHHHHHhhcCChHHHHHHH
Q 042204 274 LAQLVHSNDKEVLTDACWALYFLSN-GKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPA-LQTIGHIVAGDDFQTQCII 350 (559)
Q Consensus 274 L~~lL~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~a-l~~L~nl~~~~~~~~~~~~ 350 (559)
+..+..++..+.+.-|+..+..... ..++. ++.+-.++.. +++.+.... ..+++.+....+.
T Consensus 66 ~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------ 130 (232)
T 3jxy_A 66 IRELWDLPEREFQAAALDIMQKYKKHINETH---------IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------ 130 (232)
T ss_dssp HHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG---------HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG------
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH------
Confidence 3445556666666666666653321 12221 2223333332 344443322 3444544443332
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCH
Q 042204 351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSH 429 (559)
Q Consensus 351 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~ 429 (559)
...+.+...+.++ +.-+++.|+..+..... .+++. .++.+...+.+++..|++.+.|+|..+... .+
T Consensus 131 --~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~~--------~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p 198 (232)
T 3jxy_A 131 --LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEEL--------LFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NP 198 (232)
T ss_dssp --GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CH
T ss_pred --HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CH
Confidence 2456778888888 88888888755422211 22221 234455667888999999999999999987 66
Q ss_pred HHHHHHHHc
Q 042204 430 EQIKYLVRE 438 (559)
Q Consensus 430 ~~~~~l~~~ 438 (559)
+.+..+++.
T Consensus 199 ~~v~~fl~~ 207 (232)
T 3jxy_A 199 DVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555553
No 177
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.23 E-value=2.3e+02 Score=23.29 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=46.4
Q ss_pred ChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 042204 440 CIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK-IENLQS---HENNEIHEKS 514 (559)
Q Consensus 440 ~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~L~~---~~~~~v~~~a 514 (559)
++..|..-|. ..++.++..++..|..+++.... .+...+..-.+++. |.++.. +...+|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~------------~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP------------SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH------------HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH------------HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 3445555555 45778888899998888876432 24444544445543 445532 3456899999
Q ss_pred HHHHHhhcC
Q 042204 515 VKILETYWC 523 (559)
Q Consensus 515 ~~il~~~f~ 523 (559)
..+|+.+-.
T Consensus 122 l~li~~Wa~ 130 (152)
T 3rru_A 122 LNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998754
No 178
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=23.21 E-value=3.4e+02 Score=29.31 Aligned_cols=115 Identities=11% Similarity=0.082 Sum_probs=68.4
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh------hhHhHHHHHHH
Q 042204 177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH------AKLSMLRTATW 250 (559)
Q Consensus 177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~------~~~~~~~~a~~ 250 (559)
.++.+++ -..|.+...+.+.+..+...+..+|.++|.-.|.+++.+ ++.++..+..+ ..+.-...++.
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV-----lP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI-----YDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH-----HHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee-----hHHHHHHHHHHhccccccchhHHHHHHH
Confidence 3444443 245666667788999999999999999998888655665 45555544222 23333444566
Q ss_pred HHHHhhcCCCC--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204 251 TLSNFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297 (559)
Q Consensus 251 ~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 297 (559)
+|..+++.-.. .-...+..++..++.-+..+|+.--..++..+..++
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 66665542211 111233445555555566778776666666666554
No 179
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=21.67 E-value=1.1e+02 Score=25.20 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=50.3
Q ss_pred CHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHhcCCCC---ChHHHHHHHHHHHHHH
Q 042204 397 LIGPLINLLQN-AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKP-LCDLLPCA---NPTIVTVCLKGLENIL 467 (559)
Q Consensus 397 ~i~~Li~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~~---d~~v~~~~l~~l~~il 467 (559)
.+..|.+-|.. .++.++..|+..|-.+..++.......+....++.. |..++... ...|+..++..|....
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 34456666664 577888889999999988888777777666666653 66766532 3478888888887755
No 180
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=21.65 E-value=3.3e+02 Score=22.16 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=54.1
Q ss_pred CchHHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHH
Q 042204 132 SPPIEEVIQSGVVPRFVEFLMR------EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIRE 203 (559)
Q Consensus 132 ~~~~~~ii~~g~v~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~ 203 (559)
......+++.|++..+-..|.. ++ ..+|...+.+|.++-- .+..+.++|+-..+..+-++ +.++.++
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~-~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPN-IKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCC-HHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCC-HHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 4456777888999999888873 23 6899999999988743 36667777766666555544 5677787
Q ss_pred HHHHHHHHH
Q 042204 204 QAVWALGNV 212 (559)
Q Consensus 204 ~a~~~L~nl 212 (559)
.|-..+..-
T Consensus 126 la~~Li~~W 134 (145)
T 2xpp_A 126 SAKALVQKW 134 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666554
Done!