Query 042206
Match_columns 184
No_of_seqs 160 out of 1769
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.6 6.7E-17 2.3E-21 96.6 3.4 51 117-167 3-53 (55)
2 2ep4_A Ring finger protein 24; 99.6 3.7E-16 1.3E-20 99.1 5.6 58 116-174 12-69 (74)
3 2ect_A Ring finger protein 126 99.6 5.8E-16 2E-20 99.2 5.2 61 114-175 10-70 (78)
4 2kiz_A E3 ubiquitin-protein li 99.6 5.8E-16 2E-20 96.8 4.9 54 115-169 10-63 (69)
5 2ecl_A Ring-box protein 2; RNF 99.6 3E-16 1E-20 101.3 3.6 53 118-170 14-77 (81)
6 2ecm_A Ring finger and CHY zin 99.6 4.9E-16 1.7E-20 92.8 3.5 51 118-168 4-54 (55)
7 2l0b_A E3 ubiquitin-protein li 99.6 8.6E-16 3E-20 101.3 4.7 53 116-169 37-89 (91)
8 1x4j_A Ring finger protein 38; 99.6 3.9E-16 1.3E-20 99.3 2.9 52 117-169 21-72 (75)
9 2d8t_A Dactylidin, ring finger 99.5 2.3E-15 7.9E-20 94.7 3.5 56 116-175 12-67 (71)
10 2ea6_A Ring finger protein 4; 99.5 2.8E-15 9.5E-20 93.5 3.5 55 115-169 11-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.5 2.7E-15 9.2E-20 94.2 3.3 56 117-172 8-66 (71)
12 1v87_A Deltex protein 2; ring- 99.5 1.1E-14 3.6E-19 99.9 5.8 55 118-172 24-97 (114)
13 3dpl_R Ring-box protein 1; ubi 99.5 7.1E-15 2.4E-19 99.4 4.0 51 118-168 36-100 (106)
14 2xeu_A Ring finger protein 4; 99.5 6.2E-15 2.1E-19 90.5 2.7 54 118-171 2-58 (64)
15 2ct2_A Tripartite motif protei 99.5 1.7E-14 5.7E-19 94.2 4.8 58 114-171 10-70 (88)
16 2djb_A Polycomb group ring fin 99.5 2.3E-14 8E-19 90.2 5.2 53 115-171 11-64 (72)
17 2ecn_A Ring finger protein 141 99.5 1.9E-14 6.4E-19 90.1 3.8 50 116-170 12-61 (70)
18 2csy_A Zinc finger protein 183 99.5 3E-14 1E-18 91.8 4.5 51 114-168 10-60 (81)
19 1chc_A Equine herpes virus-1 r 99.5 3.1E-14 1E-18 88.6 4.2 50 118-170 4-53 (68)
20 2ecy_A TNF receptor-associated 99.5 5.6E-14 1.9E-18 87.0 4.6 51 116-170 12-63 (66)
21 2ysl_A Tripartite motif-contai 99.4 8.7E-14 3E-18 87.7 4.8 52 115-170 16-70 (73)
22 2yur_A Retinoblastoma-binding 99.4 7.5E-14 2.6E-18 88.4 4.5 51 114-168 10-63 (74)
23 4a0k_B E3 ubiquitin-protein li 99.4 9.6E-15 3.3E-19 100.1 0.3 51 118-168 47-111 (117)
24 4ayc_A E3 ubiquitin-protein li 99.4 2.9E-14 1E-18 101.0 2.3 49 118-170 52-100 (138)
25 2d8s_A Cellular modulator of i 99.4 1.1E-13 3.9E-18 88.7 4.6 53 116-170 12-71 (80)
26 2ecw_A Tripartite motif-contai 99.4 3.1E-13 1.1E-17 87.4 5.1 51 116-170 16-72 (85)
27 3lrq_A E3 ubiquitin-protein li 99.4 1E-13 3.6E-18 92.8 2.7 51 118-172 21-73 (100)
28 2egp_A Tripartite motif-contai 99.4 1E-13 3.6E-18 88.6 2.6 53 115-171 8-67 (79)
29 1t1h_A Gspef-atpub14, armadill 99.4 2.5E-13 8.7E-18 86.7 4.2 50 117-170 6-56 (78)
30 2ecv_A Tripartite motif-contai 99.4 4.5E-13 1.5E-17 86.6 5.4 54 115-172 15-74 (85)
31 2ct0_A Non-SMC element 1 homol 99.4 4.5E-13 1.5E-17 84.4 5.1 49 117-168 13-63 (74)
32 1g25_A CDK-activating kinase a 99.4 2.7E-13 9.4E-18 83.6 3.8 55 118-172 2-58 (65)
33 2ysj_A Tripartite motif-contai 99.4 7.3E-13 2.5E-17 81.1 4.9 46 114-163 15-63 (63)
34 4ap4_A E3 ubiquitin ligase RNF 99.3 3.5E-13 1.2E-17 94.3 3.1 57 118-174 6-65 (133)
35 2ecj_A Tripartite motif-contai 99.3 9.1E-13 3.1E-17 79.2 4.4 45 115-163 11-58 (58)
36 2y43_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 89.6 3.1 48 118-169 21-69 (99)
37 3ztg_A E3 ubiquitin-protein li 99.3 7.7E-13 2.6E-17 87.1 3.8 51 113-167 7-60 (92)
38 3fl2_A E3 ubiquitin-protein li 99.3 2.9E-13 1E-17 94.1 1.7 48 118-169 51-99 (124)
39 2ckl_A Polycomb group ring fin 99.3 3.9E-13 1.3E-17 91.2 1.9 49 117-169 13-62 (108)
40 1e4u_A Transcriptional repress 99.3 5.5E-12 1.9E-16 80.5 6.3 57 116-172 8-65 (78)
41 1jm7_A BRCA1, breast cancer ty 99.2 4.2E-12 1.4E-16 86.4 4.3 51 118-172 20-73 (112)
42 3hct_A TNF receptor-associated 99.2 3.3E-12 1.1E-16 88.0 3.7 52 115-170 14-66 (118)
43 4ap4_A E3 ubiquitin ligase RNF 99.2 1.8E-12 6.3E-17 90.6 2.2 55 117-171 70-127 (133)
44 1rmd_A RAG1; V(D)J recombinati 99.2 3.6E-12 1.2E-16 87.4 2.6 51 118-172 22-73 (116)
45 2ckl_B Ubiquitin ligase protei 99.2 2.7E-12 9.3E-17 93.4 2.0 48 118-169 53-102 (165)
46 1z6u_A NP95-like ring finger p 99.2 8.3E-12 2.9E-16 89.5 4.2 49 118-170 77-126 (150)
47 3l11_A E3 ubiquitin-protein li 99.2 1.3E-12 4.5E-17 89.5 -0.1 48 118-169 14-62 (115)
48 3knv_A TNF receptor-associated 99.2 3.8E-12 1.3E-16 90.4 2.0 49 115-167 27-76 (141)
49 2vje_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 77.9 2.1 48 118-169 7-57 (64)
50 2kr4_A Ubiquitin conjugation f 99.2 1.9E-11 6.6E-16 79.3 4.9 50 117-170 12-61 (85)
51 2y1n_A E3 ubiquitin-protein li 99.2 1.2E-11 4.2E-16 100.5 4.8 55 118-176 331-386 (389)
52 2vje_B MDM4 protein; proto-onc 99.2 6.4E-12 2.2E-16 76.9 2.1 48 118-169 6-56 (63)
53 2kre_A Ubiquitin conjugation f 99.1 3.2E-11 1.1E-15 80.6 4.5 49 117-169 27-75 (100)
54 1wgm_A Ubiquitin conjugation f 99.1 4.5E-11 1.5E-15 79.6 5.1 49 117-169 20-69 (98)
55 1bor_A Transcription factor PM 99.1 1.1E-11 3.7E-16 74.1 1.1 45 117-168 4-48 (56)
56 3k1l_B Fancl; UBC, ring, RWD, 99.1 3.1E-11 1.1E-15 95.9 2.6 55 116-170 305-374 (381)
57 4ic3_A E3 ubiquitin-protein li 99.1 1.7E-11 5.8E-16 77.4 0.7 45 118-170 23-68 (74)
58 1jm7_B BARD1, BRCA1-associated 99.1 2.2E-11 7.6E-16 83.6 0.8 45 118-168 21-66 (117)
59 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.6E-15 84.3 3.1 52 115-170 14-66 (170)
60 2ea5_A Cell growth regulator w 99.0 4.6E-10 1.6E-14 69.6 4.3 48 115-170 11-59 (68)
61 2c2l_A CHIP, carboxy terminus 99.0 5.4E-10 1.8E-14 87.3 5.7 51 115-169 204-255 (281)
62 2f42_A STIP1 homology and U-bo 98.9 1.8E-09 6.1E-14 79.2 7.3 53 114-170 101-154 (179)
63 2ecg_A Baculoviral IAP repeat- 98.9 5.2E-10 1.8E-14 70.7 2.7 44 118-169 24-68 (75)
64 2yu4_A E3 SUMO-protein ligase 98.9 5.9E-10 2E-14 73.5 2.5 45 118-166 6-59 (94)
65 2yho_A E3 ubiquitin-protein li 98.8 4.5E-10 1.5E-14 71.8 0.8 45 118-170 17-62 (79)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2E-09 6.8E-14 65.0 3.1 48 117-168 4-58 (60)
67 1wim_A KIAA0161 protein; ring 98.6 1.2E-08 4.2E-13 67.1 3.0 51 118-169 4-66 (94)
68 2bay_A PRE-mRNA splicing facto 98.6 1.2E-08 4E-13 61.8 2.6 52 120-175 4-56 (61)
69 3t6p_A Baculoviral IAP repeat- 98.6 4.5E-09 1.5E-13 84.7 0.9 45 118-170 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.6 1.8E-08 6.3E-13 77.5 3.2 49 117-169 179-232 (267)
71 3nw0_A Non-structural maintena 98.3 6.8E-07 2.3E-11 68.4 4.5 49 118-169 179-229 (238)
72 3vk6_A E3 ubiquitin-protein li 98.3 5.1E-07 1.7E-11 59.0 3.2 49 121-172 3-52 (101)
73 2ko5_A Ring finger protein Z; 96.6 0.0011 3.6E-08 42.7 2.5 51 114-170 23-74 (99)
74 2lri_C Autoimmune regulator; Z 95.8 0.0071 2.4E-07 36.6 3.1 46 117-166 10-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.023 7.8E-07 37.0 2.7 36 118-154 2-37 (101)
76 1wil_A KIAA1045 protein; ring 94.0 0.2 6.9E-06 31.4 6.0 37 115-153 11-47 (89)
77 2l5u_A Chromodomain-helicase-D 91.4 0.14 4.7E-06 30.2 2.6 46 117-166 9-58 (61)
78 1we9_A PHD finger family prote 89.2 0.11 3.7E-06 30.9 0.8 50 117-166 4-58 (64)
79 2yql_A PHD finger protein 21A; 88.9 0.068 2.3E-06 30.9 -0.3 45 117-165 7-55 (56)
80 2l43_A N-teminal domain from h 88.2 0.14 4.7E-06 32.6 0.8 51 117-167 23-76 (88)
81 1mm2_A MI2-beta; PHD, zinc fin 88.2 0.11 3.6E-06 30.7 0.2 45 118-166 8-56 (61)
82 3u5n_A E3 ubiquitin-protein li 87.3 0.1 3.4E-06 38.7 -0.3 46 118-167 6-55 (207)
83 2k16_A Transcription initiatio 87.1 0.18 6.3E-06 30.8 0.9 51 117-168 16-70 (75)
84 1weo_A Cellulose synthase, cat 86.2 4.4 0.00015 25.6 6.9 60 118-177 15-79 (93)
85 3o36_A Transcription intermedi 86.0 0.16 5.6E-06 36.7 0.3 46 118-167 3-52 (184)
86 2ku3_A Bromodomain-containing 85.6 0.34 1.2E-05 29.5 1.5 50 117-166 14-66 (71)
87 3m62_A Ubiquitin conjugation f 85.5 0.67 2.3E-05 41.9 3.9 50 117-170 889-939 (968)
88 2puy_A PHD finger protein 21A; 84.5 0.19 6.5E-06 29.4 -0.0 46 118-167 4-53 (60)
89 2e6r_A Jumonji/ARID domain-con 84.0 0.37 1.3E-05 30.9 1.2 50 116-166 13-66 (92)
90 3v43_A Histone acetyltransfera 83.9 0.23 7.9E-06 33.0 0.2 47 119-165 61-111 (112)
91 1xwh_A Autoimmune regulator; P 83.7 0.33 1.1E-05 29.0 0.9 45 118-166 7-55 (66)
92 2yw8_A RUN and FYVE domain-con 82.4 0.96 3.3E-05 28.1 2.7 50 118-167 18-73 (82)
93 2vpb_A Hpygo1, pygopus homolog 82.0 1.1 3.7E-05 26.6 2.7 35 117-151 6-41 (65)
94 3v43_A Histone acetyltransfera 82.0 2.2 7.6E-05 28.1 4.5 34 118-151 4-42 (112)
95 1wfk_A Zinc finger, FYVE domai 80.9 1.3 4.5E-05 28.0 2.9 54 117-170 7-67 (88)
96 1y02_A CARP2, FYVE-ring finger 80.5 0.31 1.1E-05 32.9 -0.1 48 118-165 18-65 (120)
97 1z2q_A LM5-1; membrane protein 79.8 2.1 7.3E-05 26.6 3.7 52 117-168 19-78 (84)
98 1fp0_A KAP-1 corepressor; PHD 79.6 0.62 2.1E-05 29.6 1.0 45 117-165 23-71 (88)
99 1f62_A Transcription factor WS 79.4 0.72 2.5E-05 25.8 1.2 44 121-165 2-49 (51)
100 1vfy_A Phosphatidylinositol-3- 79.4 1.4 4.9E-05 26.7 2.7 33 120-152 12-44 (73)
101 2ysm_A Myeloid/lymphoid or mix 78.4 0.63 2.1E-05 30.7 0.9 37 118-155 6-42 (111)
102 2knc_B Integrin beta-3; transm 78.3 9.4 0.00032 23.5 7.6 14 32-45 22-35 (79)
103 2yt5_A Metal-response element- 77.0 1.3 4.4E-05 26.1 1.9 50 117-166 4-61 (66)
104 1zbd_B Rabphilin-3A; G protein 76.7 6.8 0.00023 26.7 5.7 49 117-165 53-106 (134)
105 1wev_A Riken cDNA 1110020M19; 76.3 0.37 1.3E-05 30.6 -0.7 51 118-168 15-74 (88)
106 2ro1_A Transcription intermedi 76.1 0.57 2E-05 34.1 0.2 44 119-166 2-49 (189)
107 1joc_A EEA1, early endosomal a 75.9 1.5 5.2E-05 29.6 2.2 35 118-152 68-102 (125)
108 3t7l_A Zinc finger FYVE domain 75.5 1.6 5.6E-05 27.6 2.2 50 118-167 19-74 (90)
109 1x4u_A Zinc finger, FYVE domai 75.5 2.9 9.7E-05 26.0 3.3 36 117-152 12-47 (84)
110 1wep_A PHF8; structural genomi 75.0 4.8 0.00016 24.6 4.2 49 118-167 11-64 (79)
111 1dvp_A HRS, hepatocyte growth 73.5 1.7 5.8E-05 32.2 2.2 35 118-152 160-194 (220)
112 3zyq_A Hepatocyte growth facto 72.8 1.8 6.3E-05 32.2 2.2 50 118-167 163-220 (226)
113 2ri7_A Nucleosome-remodeling f 71.5 1 3.4E-05 32.1 0.5 48 118-166 7-59 (174)
114 2cs3_A Protein C14ORF4, MY039 68.9 14 0.00047 22.9 5.1 39 117-156 13-52 (93)
115 2lbm_A Transcriptional regulat 68.8 6.7 0.00023 27.1 4.2 45 117-165 61-116 (142)
116 1z60_A TFIIH basal transcripti 68.6 2.7 9.1E-05 24.5 1.8 43 120-163 16-58 (59)
117 2kwj_A Zinc finger protein DPF 67.9 4 0.00014 26.9 2.9 33 121-153 3-41 (114)
118 1wem_A Death associated transc 67.6 2.9 0.0001 25.4 2.0 47 118-166 15-70 (76)
119 2lv9_A Histone-lysine N-methyl 67.3 1.9 6.4E-05 27.8 1.1 46 118-165 27-75 (98)
120 3ql9_A Transcriptional regulat 66.2 7.9 0.00027 26.2 4.1 44 118-165 56-110 (129)
121 2o35_A Hypothetical protein DU 66.1 2.5 8.4E-05 27.3 1.4 12 144-155 42-53 (105)
122 3fyb_A Protein of unknown func 66.0 2.5 8.5E-05 27.2 1.4 12 144-155 41-52 (104)
123 2knc_A Integrin alpha-IIB; tra 65.1 10 0.00034 21.6 3.7 10 17-26 11-20 (54)
124 4gne_A Histone-lysine N-methyl 64.1 5.1 0.00018 26.2 2.7 44 117-166 13-62 (107)
125 1g47_A Pinch protein; LIM doma 63.4 6.9 0.00024 23.2 3.1 43 118-170 10-52 (77)
126 1pi7_A VPU protein, U ORF prot 63.4 14 0.00047 19.1 3.9 11 34-44 17-27 (36)
127 2xb1_A Pygopus homolog 2, B-ce 62.9 4.3 0.00015 26.4 2.2 49 119-167 3-62 (105)
128 2cu8_A Cysteine-rich protein 2 62.2 4.1 0.00014 24.3 1.9 40 119-169 9-48 (76)
129 1wee_A PHD finger family prote 62.1 1.7 5.8E-05 26.2 0.1 48 118-166 15-66 (72)
130 1wyh_A SLIM 2, skeletal muscle 62.0 6.2 0.00021 23.1 2.7 41 119-169 5-45 (72)
131 2kgg_A Histone demethylase jar 61.7 2.1 7.3E-05 24.0 0.5 44 121-164 4-52 (52)
132 1iml_A CRIP, cysteine rich int 61.3 3 0.0001 24.9 1.2 14 118-131 26-39 (76)
133 2dj7_A Actin-binding LIM prote 60.8 7.3 0.00025 23.6 2.9 40 118-168 14-53 (80)
134 3ask_A E3 ubiquitin-protein li 60.4 2.4 8.3E-05 31.7 0.7 44 121-165 176-224 (226)
135 2cor_A Pinch protein; LIM doma 60.3 9.3 0.00032 23.0 3.3 41 118-170 14-54 (79)
136 2e6s_A E3 ubiquitin-protein li 60.3 0.97 3.3E-05 27.9 -1.3 44 121-165 28-76 (77)
137 2knc_A Integrin alpha-IIB; tra 60.0 20 0.0007 20.3 4.4 22 24-45 13-34 (54)
138 3shb_A E3 ubiquitin-protein li 60.0 1 3.5E-05 27.8 -1.2 44 121-165 28-76 (77)
139 1x4l_A Skeletal muscle LIM-pro 59.3 9.2 0.00031 22.4 3.1 41 119-169 5-47 (72)
140 3lqh_A Histone-lysine N-methyl 58.9 5.5 0.00019 28.7 2.4 49 119-167 2-64 (183)
141 3o70_A PHD finger protein 13; 58.9 2.7 9.1E-05 25.1 0.6 47 117-165 17-66 (68)
142 3mpx_A FYVE, rhogef and PH dom 58.8 2 6.9E-05 34.9 0.0 50 118-167 374-430 (434)
143 3asl_A E3 ubiquitin-protein li 58.2 1.1 3.8E-05 27.0 -1.2 44 121-165 20-68 (70)
144 1x64_A Alpha-actinin-2 associa 58.1 9.3 0.00032 23.5 3.1 40 118-169 24-63 (89)
145 1x62_A C-terminal LIM domain p 58.1 6.7 0.00023 23.6 2.4 40 118-169 14-53 (79)
146 1x4k_A Skeletal muscle LIM-pro 56.8 5.1 0.00018 23.5 1.6 40 120-169 6-45 (72)
147 1x61_A Thyroid receptor intera 56.6 9.4 0.00032 22.3 2.8 40 119-168 5-44 (72)
148 2co8_A NEDD9 interacting prote 56.2 10 0.00036 23.0 3.1 43 118-171 14-56 (82)
149 2l8s_A Integrin alpha-1; trans 55.0 9.3 0.00032 21.7 2.4 19 24-42 10-28 (54)
150 1nyp_A Pinch protein; LIM doma 54.7 6.7 0.00023 22.5 1.9 39 119-169 5-43 (66)
151 2d8x_A Protein pinch; LIM doma 54.2 6.8 0.00023 22.8 1.9 40 119-170 5-44 (70)
152 2d8z_A Four and A half LIM dom 54.0 7.4 0.00025 22.6 2.0 39 119-169 5-43 (70)
153 1wew_A DNA-binding family prot 53.5 6.2 0.00021 24.1 1.6 47 118-166 15-72 (78)
154 3eff_K Voltage-gated potassium 53.4 47 0.0016 22.1 6.8 13 11-23 62-74 (139)
155 1x63_A Skeletal muscle LIM-pro 52.9 7.8 0.00027 23.3 2.1 41 119-169 15-55 (82)
156 2zet_C Melanophilin; complex, 52.7 8.7 0.0003 26.8 2.5 47 118-165 67-116 (153)
157 1wen_A Inhibitor of growth fam 52.0 9.1 0.00031 22.9 2.2 45 117-166 14-65 (71)
158 1x68_A FHL5 protein; four-and- 51.9 9.2 0.00031 22.7 2.3 39 120-168 6-46 (76)
159 2dar_A PDZ and LIM domain prot 51.9 5.7 0.0002 24.6 1.3 41 118-170 24-64 (90)
160 1weu_A Inhibitor of growth fam 51.9 10 0.00035 24.0 2.5 47 117-166 34-85 (91)
161 3a1b_A DNA (cytosine-5)-methyl 51.3 15 0.00052 25.8 3.5 35 118-156 78-114 (159)
162 2gmg_A Hypothetical protein PF 51.1 3 0.0001 27.2 -0.1 25 138-167 70-94 (105)
163 3f6q_B LIM and senescent cell 51.0 9.9 0.00034 22.0 2.3 43 118-170 10-52 (72)
164 1wig_A KIAA1808 protein; LIM d 49.1 9.3 0.00032 22.6 1.9 37 120-168 6-42 (73)
165 2d8y_A Eplin protein; LIM doma 48.9 29 0.00098 21.3 4.3 42 118-170 14-55 (91)
166 1a7i_A QCRP2 (LIM1); LIM domai 48.0 5.1 0.00018 24.2 0.6 41 119-170 7-47 (81)
167 2l3k_A Rhombotin-2, linker, LI 47.9 9.8 0.00034 25.1 2.1 35 118-154 35-69 (123)
168 1zfo_A LAsp-1; LIM domain, zin 47.7 7.6 0.00026 19.1 1.1 28 120-150 4-31 (31)
169 2a20_A Regulating synaptic mem 46.7 2.6 9E-05 24.4 -0.8 49 117-165 7-59 (62)
170 3mjh_B Early endosome antigen 46.0 5 0.00017 20.5 0.3 10 158-167 6-15 (34)
171 2pv0_B DNA (cytosine-5)-methyl 45.7 19 0.00066 29.1 3.8 34 118-155 92-127 (386)
172 2jvx_A NF-kappa-B essential mo 45.5 4.8 0.00016 19.6 0.1 13 157-169 3-15 (28)
173 2jmo_A Parkin; IBR, E3 ligase, 45.3 1.4 4.8E-05 27.2 -2.3 20 140-161 55-74 (80)
174 4fo9_A E3 SUMO-protein ligase 45.2 16 0.00055 29.2 3.2 46 120-168 216-265 (360)
175 3i2d_A E3 SUMO-protein ligase 44.9 17 0.00057 29.3 3.2 46 119-167 249-298 (371)
176 2ehe_A Four and A half LIM dom 44.7 14 0.00048 22.1 2.3 40 120-169 16-55 (82)
177 1x6a_A LIMK-2, LIM domain kina 44.5 13 0.00046 22.2 2.2 37 120-168 16-52 (81)
178 2cur_A Skeletal muscle LIM-pro 41.1 12 0.00039 21.7 1.4 38 119-168 5-42 (69)
179 1v6g_A Actin binding LIM prote 40.9 10 0.00034 22.8 1.2 37 120-168 16-52 (81)
180 2dlo_A Thyroid receptor-intera 40.6 9.4 0.00032 23.0 1.0 40 119-170 15-54 (81)
181 2egq_A FHL1 protein; LIM domai 40.1 16 0.00056 21.5 2.1 42 119-170 15-59 (77)
182 2vnf_A ING 4, P29ING4, inhibit 38.5 9.4 0.00032 22.0 0.7 43 118-165 9-58 (60)
183 1wd2_A Ariadne-1 protein homol 38.3 4.8 0.00016 23.4 -0.6 38 119-156 6-47 (60)
184 2cuq_A Four and A half LIM dom 37.8 15 0.00052 21.9 1.6 37 120-168 16-52 (80)
185 2iyb_E Testin, TESS, TES; LIM 37.8 17 0.00057 20.8 1.8 39 121-169 4-44 (65)
186 3c6w_A P28ING5, inhibitor of g 36.8 11 0.00037 21.6 0.8 45 118-165 8-57 (59)
187 2cup_A Skeletal muscle LIM-pro 36.4 25 0.00086 21.9 2.6 46 118-168 32-77 (101)
188 2l4z_A DNA endonuclease RBBP8, 36.4 17 0.00059 24.0 1.9 40 118-168 60-99 (123)
189 2d8v_A Zinc finger FYVE domain 35.5 22 0.00075 21.0 1.9 33 117-154 6-39 (67)
190 1x3h_A Leupaxin; paxillin fami 35.3 14 0.00049 22.0 1.2 39 120-170 16-54 (80)
191 2ct7_A Ring finger protein 31; 34.3 3.2 0.00011 25.9 -2.0 27 137-163 45-73 (86)
192 1loi_A Cyclic 3',5'-AMP specif 33.9 2 6.9E-05 19.8 -2.1 12 144-155 6-17 (26)
193 1v54_I STA, cytochrome C oxida 32.9 82 0.0028 18.9 5.4 32 11-42 7-38 (73)
194 2lcq_A Putative toxin VAPC6; P 31.2 15 0.00053 25.5 1.0 25 138-168 135-159 (165)
195 1zza_A Stannin, AG8_1; helix, 29.2 29 0.00098 20.9 1.7 9 34-42 27-35 (90)
196 3kqi_A GRC5, PHD finger protei 28.8 20 0.0007 21.4 1.1 45 122-166 12-61 (75)
197 1m3v_A FLIN4, fusion of the LI 28.7 50 0.0017 21.5 3.2 53 118-172 31-84 (122)
198 1rut_X Flinc4, fusion protein 28.6 26 0.0009 24.8 1.9 27 121-149 71-97 (188)
199 2rsd_A E3 SUMO-protein ligase 28.0 8.5 0.00029 22.7 -0.8 46 119-165 10-64 (68)
200 2rgt_A Fusion of LIM/homeobox 27.2 36 0.0012 23.6 2.4 9 159-167 95-103 (169)
201 3kv5_D JMJC domain-containing 26.7 18 0.00063 30.1 0.8 48 118-166 36-88 (488)
202 2pk7_A Uncharacterized protein 26.6 10 0.00035 22.6 -0.5 17 152-168 3-19 (69)
203 2jp3_A FXYD domain-containing 25.9 57 0.0019 19.3 2.6 8 11-18 9-16 (67)
204 2jny_A Uncharacterized BCR; st 24.5 11 0.00037 22.5 -0.8 17 152-168 5-21 (67)
205 2csz_A Synaptotagmin-like prot 24.1 61 0.0021 19.7 2.6 34 116-149 22-56 (76)
206 2jmi_A Protein YNG1, ING1 homo 24.0 31 0.0011 21.7 1.3 46 117-165 24-75 (90)
207 2lx0_A Membrane fusion protein 23.9 70 0.0024 15.3 3.8 17 26-42 8-24 (32)
208 3odu_A C-X-C chemokine recepto 23.7 1.1E+02 0.0037 24.4 4.9 11 30-40 220-230 (502)
209 1b8t_A Protein (CRP1); LIM dom 22.9 34 0.0012 24.2 1.6 39 119-168 115-153 (192)
210 2kpi_A Uncharacterized protein 22.6 51 0.0018 18.6 2.0 16 117-132 8-23 (56)
211 2xjy_A Rhombotin-2; oncoprotei 22.4 81 0.0028 20.5 3.3 50 118-168 28-77 (131)
212 1j2o_A FLIN2, fusion of rhombo 21.4 45 0.0015 21.4 1.8 37 118-156 29-66 (114)
213 2xqn_T Testin, TESS; metal-bin 21.3 45 0.0015 21.6 1.8 9 122-130 66-74 (126)
214 2jtn_A LIM domain-binding prot 20.9 48 0.0017 23.2 2.0 45 118-168 86-130 (182)
215 2apo_B Ribosome biogenesis pro 20.8 50 0.0017 19.1 1.7 24 157-180 18-41 (60)
216 3ixz_B Potassium-transporting 20.5 1.4E+02 0.0049 22.9 4.7 15 31-45 49-63 (290)
217 2fiy_A Protein FDHE homolog; F 20.4 6.5 0.00022 30.8 -3.0 49 117-166 180-231 (309)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.65 E-value=6.7e-17 Score=96.65 Aligned_cols=51 Identities=47% Similarity=1.103 Sum_probs=45.5
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~ 167 (184)
+++.+|+||++.+..++....+++|||.||..|+.+|++.+.+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 356789999999999888777756999999999999999999999999876
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=99.05 Aligned_cols=58 Identities=36% Similarity=0.836 Sum_probs=49.0
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccccCCC
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 174 (184)
...+..|+||++.+.....+..+ +|+|.||..||.+|++.+.+||+||+++.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 34677899999999888777666 69999999999999998889999999987654433
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=5.8e-16 Score=99.15 Aligned_cols=61 Identities=30% Similarity=0.800 Sum_probs=50.4
Q ss_pred ccCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccccCCCC
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAWPSV 175 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 175 (184)
+.......|+||++.|...+.+..+ +|+|.||..||..|++.+.+||+||..+........
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3345678999999999887766655 699999999999999999999999999876555443
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=96.84 Aligned_cols=54 Identities=33% Similarity=0.935 Sum_probs=46.0
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
.......|+||++.+..++.+..+ +|||.||..||..|+..+.+||+||..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 334677899999999877766655 699999999999999988999999998854
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=101.33 Aligned_cols=53 Identities=34% Similarity=0.764 Sum_probs=43.6
Q ss_pred CCccCccccccccc-----------CCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRD-----------GDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-----------~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
++..|+||++.+.. ++.++.+++|+|.||.+||.+|+..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 56678999888854 344566667999999999999999999999999987543
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.59 E-value=4.9e-16 Score=92.79 Aligned_cols=51 Identities=31% Similarity=0.757 Sum_probs=44.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+...|+||++.+.+++.....++|+|.||..|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 567899999999776665666789999999999999998899999998763
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.59 E-value=8.6e-16 Score=101.33 Aligned_cols=53 Identities=36% Similarity=0.866 Sum_probs=46.5
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
..++..|+||++.|..++.+..+ +|||.||..||..|++.+.+||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34677899999999988876666 599999999999999999999999998753
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-16 Score=99.28 Aligned_cols=52 Identities=37% Similarity=0.965 Sum_probs=45.8
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
.+...|+||++.+..++.+..+ +|+|.||..||.+|++.+.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4677899999999988876766 599999999999999989999999998743
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=94.68 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=47.0
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccccCCCC
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAWPSV 175 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 175 (184)
..+...|+||++.+.. ++.++|||.||..||..|+..+..||+||..+....+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 3467889999999976 5556899999999999999999999999999876554443
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=93.52 Aligned_cols=55 Identities=29% Similarity=0.756 Sum_probs=44.8
Q ss_pred cCCCCccCcccccccccC---CcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDG---DECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~---~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...+...|+||++.+... ....+.++|||.||..||..|+..+.+||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345778899999999763 2223556899999999999999989999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=2.7e-15 Score=94.19 Aligned_cols=56 Identities=29% Similarity=0.765 Sum_probs=45.8
Q ss_pred CCCccCcccccccccC---CcceeccCCCCcccHhhHHHHHhCCCcccccccccccccC
Q 042206 117 NKTSTCVICLGEFRDG---DECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~---~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 172 (184)
.++..|+||++.+... ....+.++|||.||..|+.+|++.+.+||+||..+....+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3677899999999763 2334566899999999999999988999999999865443
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.53 E-value=1.1e-14 Score=99.87 Aligned_cols=55 Identities=24% Similarity=0.543 Sum_probs=42.9
Q ss_pred CCccCcccccccccCC--------------cceeccCCCCcccHhhHHHHH-----hCCCcccccccccccccC
Q 042206 118 KTSTCVICLGEFRDGD--------------ECKVRSKCNHIFHQTCIDDWL-----DDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~--------------~~~~~~~C~H~Fh~~Ci~~w~-----~~~~~CP~Cr~~~~~~~~ 172 (184)
.+..|+||++.|.... .+..+++|+|.||..||..|+ ..+.+||+||+.+....-
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 4468999999996543 233356899999999999999 456799999998865543
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.51 E-value=7.1e-15 Score=99.38 Aligned_cols=51 Identities=31% Similarity=0.670 Sum_probs=41.8
Q ss_pred CCccCcccccccccC--------------CcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDG--------------DECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~--------------~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
++..|+||++.|... +....+++|+|.||..||.+|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 567899999998753 112344579999999999999999999999999863
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=6.2e-15 Score=90.55 Aligned_cols=54 Identities=28% Similarity=0.748 Sum_probs=44.0
Q ss_pred CCccCcccccccccC---CcceeccCCCCcccHhhHHHHHhCCCccccccccccccc
Q 042206 118 KTSTCVICLGEFRDG---DECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~---~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 171 (184)
++.+|+||++.+... ......++|||.||..|+..|+..+.+||+||+++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456899999999763 233355579999999999999998999999999886543
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=94.24 Aligned_cols=58 Identities=24% Similarity=0.598 Sum_probs=47.9
Q ss_pred ccCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC---Cccccccccccccc
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH---STCPLCRGRVRRIA 171 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~---~~CP~Cr~~~~~~~ 171 (184)
+...+...|+||++.|..++..+..++|||.||..|+..|+..+ ..||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 34457788999999998877656666899999999999999765 78999999876543
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.3e-14 Score=90.24 Aligned_cols=53 Identities=26% Similarity=0.560 Sum_probs=44.3
Q ss_pred cCCCCccCcccccccccCCcceec-cCCCCcccHhhHHHHHhCCCccccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVR-SKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 171 (184)
...+...|+||++.+.+ ++. ++|||.||..||..|+..+..||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLID----ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34567889999999976 443 389999999999999988899999999886543
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=90.13 Aligned_cols=50 Identities=36% Similarity=0.852 Sum_probs=42.9
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
..+...|+||++.+.. . .++|||.||..|+..|+..+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----c-ccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3467889999999876 3 347999999999999999999999999988654
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=91.77 Aligned_cols=51 Identities=24% Similarity=0.603 Sum_probs=44.3
Q ss_pred ccCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+.......|+||++.+.. ++.++|||.||..|+..|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 334567789999999977 566789999999999999998899999999875
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.47 E-value=3.1e-14 Score=88.60 Aligned_cols=50 Identities=32% Similarity=0.780 Sum_probs=42.0
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
.+..|+||++.+... ...++|||.||..|+..|+..+.+||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 566899999998652 24557999999999999999889999999988643
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.6e-14 Score=86.96 Aligned_cols=51 Identities=20% Similarity=0.529 Sum_probs=42.7
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHH-hCCCcccccccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL-DDHSTCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-~~~~~CP~Cr~~~~~~ 170 (184)
..+...|+||++.+.. ++.++|||.||..|+..|+ ..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESS----CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcC----eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3567889999999976 4556899999999999999 4667899999987543
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.7e-14 Score=87.68 Aligned_cols=52 Identities=31% Similarity=0.686 Sum_probs=43.2
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh---CCCcccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD---DHSTCPLCRGRVRRI 170 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~CP~Cr~~~~~~ 170 (184)
...+...|+||++.+.. ++.++|||.||..|+..|+. ....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34577899999999986 55568999999999999996 456899999987543
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=7.5e-14 Score=88.39 Aligned_cols=51 Identities=27% Similarity=0.586 Sum_probs=42.5
Q ss_pred ccCCCCccCcccccccccCCcceeccC-CCCcccHhhHHHHHhCC--Ccccccccccc
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSK-CNHIFHQTCIDDWLDDH--STCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~~--~~CP~Cr~~~~ 168 (184)
+...+...|+||++.+.. ++.++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 334577889999999987 56678 99999999999999754 68999999753
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.44 E-value=9.6e-15 Score=100.14 Aligned_cols=51 Identities=35% Similarity=0.823 Sum_probs=1.1
Q ss_pred CCccCccccccccc-------------CCcc-eeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRD-------------GDEC-KVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-------------~~~~-~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
++..|+||++.|.. +++. ...++|+|.||..||.+|++.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45689999999975 2322 233579999999999999999999999999863
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=2.9e-14 Score=100.99 Aligned_cols=49 Identities=31% Similarity=0.869 Sum_probs=42.7
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
++..|+||++.+.. ++.++|||.||..||..|+..+.+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34579999999977 66668999999999999999999999999988543
No 25
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=88.73 Aligned_cols=53 Identities=26% Similarity=0.666 Sum_probs=43.0
Q ss_pred CCCCccCcccccccccCCcceeccCCC-----CcccHhhHHHHHhCC--Ccccccccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCN-----HIFHQTCIDDWLDDH--STCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 170 (184)
..++..|.||++++..++.+ + +||+ |.||..||++|+..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-I-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-E-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-E-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34667899999999877664 3 4796 999999999999754 5999999988543
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.1e-13 Score=87.38 Aligned_cols=51 Identities=31% Similarity=0.698 Sum_probs=43.4
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC------CCcccccccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD------HSTCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~------~~~CP~Cr~~~~~~ 170 (184)
..+...|+||++.+.. ++.++|||.||..|+..|+.. ...||.||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567899999999977 556689999999999999976 67899999988654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=92.82 Aligned_cols=51 Identities=27% Similarity=0.771 Sum_probs=43.4
Q ss_pred CCccCcccccccccCCcceec-cCCCCcccHhhHHHHHhCC-CcccccccccccccC
Q 042206 118 KTSTCVICLGEFRDGDECKVR-SKCNHIFHQTCIDDWLDDH-STCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~~-~~CP~Cr~~~~~~~~ 172 (184)
+...|+||++.+.. ++. ++|||.||..||..|+..+ ..||+||.++....+
T Consensus 21 ~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRD----ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccC----ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 56689999999986 565 7899999999999999876 799999999865443
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=88.62 Aligned_cols=53 Identities=26% Similarity=0.550 Sum_probs=44.0
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC-------CCccccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-------HSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-------~~~CP~Cr~~~~~~~ 171 (184)
...+...|+||++.+.. ++.++|||.||..|+..|+.. ...||+||..+....
T Consensus 8 ~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34577889999999977 555689999999999999976 668999999886543
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=2.5e-13 Score=86.69 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=43.5
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC-CCcccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-HSTCPLCRGRVRRI 170 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 170 (184)
.+...|+||++.+.+ ++.++|||.||..||..|+.. +.+||+||.++...
T Consensus 6 ~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 467889999999987 666689999999999999986 78999999988543
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=86.64 Aligned_cols=54 Identities=30% Similarity=0.618 Sum_probs=44.7
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC------CCcccccccccccccC
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD------HSTCPLCRGRVRRIAW 172 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~------~~~CP~Cr~~~~~~~~ 172 (184)
...+...|+||++.+.. ++.++|||.||..|+..|+.. ...||.||..+....+
T Consensus 15 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred HccCCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 34577899999999976 455689999999999999976 7789999998865433
No 31
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=84.37 Aligned_cols=49 Identities=22% Similarity=0.706 Sum_probs=42.1
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC--Ccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH--STCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~--~~CP~Cr~~~~ 168 (184)
+...+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||+++.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 35678999999998876554 699999999999999876 89999998764
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=2.7e-13 Score=83.55 Aligned_cols=55 Identities=20% Similarity=0.540 Sum_probs=42.8
Q ss_pred CCccCccccc-ccccCCcceeccCCCCcccHhhHHHHHh-CCCcccccccccccccC
Q 042206 118 KTSTCVICLG-EFRDGDECKVRSKCNHIFHQTCIDDWLD-DHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~-~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~~ 172 (184)
++..|+||++ .+.......+.++|||.||..|+..|+. ....||+||+.+....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 4567999999 7776544345568999999999999975 45689999998865443
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.3e-13 Score=81.08 Aligned_cols=46 Identities=30% Similarity=0.723 Sum_probs=38.6
Q ss_pred ccCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh---CCCccccc
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD---DHSTCPLC 163 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~CP~C 163 (184)
+...++..|+||++.+.+ ++.++|||.||..||..|+. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 334577899999999987 55568999999999999997 45689998
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.5e-13 Score=94.26 Aligned_cols=57 Identities=28% Similarity=0.743 Sum_probs=46.4
Q ss_pred CCccCcccccccccC---CcceeccCCCCcccHhhHHHHHhCCCcccccccccccccCCC
Q 042206 118 KTSTCVICLGEFRDG---DECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~---~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 174 (184)
+..+|+||++.+... ....+.++|||.||..||.+|++.+.+||+||+.+.......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 567899999999763 233355689999999999999999999999999987655433
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.1e-13 Score=79.16 Aligned_cols=45 Identities=29% Similarity=0.888 Sum_probs=37.4
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHH---hCCCccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL---DDHSTCPLC 163 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~---~~~~~CP~C 163 (184)
...+...|+||++.+.+ ++.++|||.||..||..|+ ..+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34577899999999987 4556899999999999995 456789988
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=4.3e-13 Score=89.56 Aligned_cols=48 Identities=27% Similarity=0.623 Sum_probs=41.8
Q ss_pred CCccCcccccccccCCcceecc-CCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
+...|+||++.+.. ++.+ +|||.||..|+..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC----cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45689999999987 5444 799999999999999988999999998865
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=7.7e-13 Score=87.09 Aligned_cols=51 Identities=29% Similarity=0.634 Sum_probs=42.7
Q ss_pred cccCCCCccCcccccccccCCcceeccC-CCCcccHhhHHHHHhC--CCccccccccc
Q 042206 113 DDAVNKTSTCVICLGEFRDGDECKVRSK-CNHIFHQTCIDDWLDD--HSTCPLCRGRV 167 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~--~~~CP~Cr~~~ 167 (184)
.+...+...|+||++.|.+ ++.++ |||.||..||..|+.. ...||+||..+
T Consensus 7 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3344578899999999987 66778 9999999999999963 36899999986
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.32 E-value=2.9e-13 Score=94.06 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=41.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC-Cccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH-STCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 169 (184)
+...|+||++.+.. ++.++|||.||..||..|+..+ ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 55689999999987 6666899999999999999754 499999998855
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.31 E-value=3.9e-13 Score=91.19 Aligned_cols=49 Identities=37% Similarity=0.806 Sum_probs=42.6
Q ss_pred CCCccCcccccccccCCcceecc-CCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
.+...|+||++.+.. ++.+ +|||.||..||..|+..+..||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 366789999999976 5554 899999999999999989999999998754
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.29 E-value=5.5e-12 Score=80.49 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=43.1
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-CCCcccccccccccccC
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-DHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~~ 172 (184)
.+++..|+||++.+...+....-.+|||.||..|+..|+. ....||.||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3477889999998865443222225999999999999874 46789999999866443
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=4.2e-12 Score=86.41 Aligned_cols=51 Identities=33% Similarity=0.830 Sum_probs=41.8
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCC---cccccccccccccC
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHS---TCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~---~CP~Cr~~~~~~~~ 172 (184)
+...|+||++.+.. ++.++|||.||..|+..|+..+. .||+||..+....+
T Consensus 20 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 34579999999976 55568999999999999998654 89999998865433
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=3.3e-12 Score=87.95 Aligned_cols=52 Identities=27% Similarity=0.595 Sum_probs=43.7
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCC-cccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHS-TCPLCRGRVRRI 170 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 170 (184)
...+...|+||++.+.. ++.++|||.||..||..|+..+. +||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34567789999999987 56668999999999999997654 999999988653
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=1.8e-12 Score=90.56 Aligned_cols=55 Identities=29% Similarity=0.754 Sum_probs=45.0
Q ss_pred CCCccCcccccccccC---CcceeccCCCCcccHhhHHHHHhCCCccccccccccccc
Q 042206 117 NKTSTCVICLGEFRDG---DECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~---~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 171 (184)
.+...|+||++.+... ....+.++|||.||..|+.+|++.+++||+||.++....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4677899999999762 223355579999999999999999999999999986654
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.21 E-value=3.6e-12 Score=87.44 Aligned_cols=51 Identities=33% Similarity=0.621 Sum_probs=43.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC-CCcccccccccccccC
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-HSTCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 172 (184)
+...|+||++.+.+ ++.++|||.||..||..|+.. +.+||+||..+....+
T Consensus 22 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 46689999999977 666789999999999999975 7799999999866443
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.21 E-value=2.7e-12 Score=93.41 Aligned_cols=48 Identities=29% Similarity=0.708 Sum_probs=40.8
Q ss_pred CCccCcccccccccCCcceecc-CCCCcccHhhHHHHHhC-CCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWLDD-HSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 169 (184)
+...|+||++.+.. ++.+ +|||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN----TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 55689999999987 4433 89999999999999986 7889999998743
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.21 E-value=8.3e-12 Score=89.48 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=42.2
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCC-cccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHS-TCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 170 (184)
+...|+||++.+.. ++.++|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999987 66678999999999999998654 899999998654
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.20 E-value=1.3e-12 Score=89.51 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=41.6
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC-CCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-HSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 169 (184)
++..|+||++.+.. ++.++|||.||..||..|+.. +..||.||..+..
T Consensus 14 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 56789999999987 566689999999999999975 6789999998864
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.20 E-value=3.8e-12 Score=90.35 Aligned_cols=49 Identities=18% Similarity=0.520 Sum_probs=42.0
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC-Cccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH-STCPLCRGRV 167 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~-~~CP~Cr~~~ 167 (184)
...+...|+||++.+.. ++.++|||.||..||..|+..+ ..||.||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34577899999999987 6667899999999999999755 4899999975
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=4.5e-12 Score=77.87 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=40.9
Q ss_pred CCccCcccccccccCCcceecc--CCCCc-ccHhhHHHHHhCCCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRS--KCNHI-FHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~--~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
++.+|.||++...+ .+++ ||||. |+..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 55689999998876 4444 89999 8999999999988999999998854
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.19 E-value=1.9e-11 Score=79.28 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
.+...|+||++.|.+ ++.++|||.|+..||..|+..+.+||+||.++...
T Consensus 12 p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC----CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 467899999999998 88888999999999999998889999999987543
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.19 E-value=1.2e-11 Score=100.49 Aligned_cols=55 Identities=24% Similarity=0.639 Sum_probs=46.1
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-CCCcccccccccccccCCCCC
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-DHSTCPLCRGRVRRIAWPSVT 176 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~~~~~~ 176 (184)
....|+||++.+.. ++.++|||.||..|+..|+. ...+||+||.++.......+.
T Consensus 331 ~~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 331 TFQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence 34689999999976 66678999999999999998 788999999998776554443
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.18 E-value=6.4e-12 Score=76.94 Aligned_cols=48 Identities=19% Similarity=0.471 Sum_probs=40.4
Q ss_pred CCccCcccccccccCCcceecc--CCCCc-ccHhhHHHHHhCCCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRS--KCNHI-FHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~--~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
....|.||++...+ ..+. ||||. |+..|+..|.+.+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 55689999998765 3333 89998 9999999999888999999998854
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=3.2e-11 Score=80.61 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=44.6
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
.+...|+||++.|.+ ++.++|||.|+..||..|+..+.+||.||.++..
T Consensus 27 p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC----CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 467899999999998 8878899999999999999988999999998754
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=4.5e-11 Score=79.56 Aligned_cols=49 Identities=16% Similarity=0.037 Sum_probs=44.7
Q ss_pred CCCccCcccccccccCCcceeccCCC-CcccHhhHHHHHhCCCccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCN-HIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
.+...|+||++.|.+ ++.++|| |.|+..||..|+..+.+||+||.++..
T Consensus 20 p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 467899999999998 8888999 999999999999888999999998854
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=1.1e-11 Score=74.08 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=38.0
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
.+...|+||++.+.. ++.++|||.||..|+..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 366789999999987 566689999999999874 578999999874
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.08 E-value=3.1e-11 Score=95.88 Aligned_cols=55 Identities=27% Similarity=0.745 Sum_probs=43.4
Q ss_pred CCCCccCcccccccccCCccee----ccCCCCcccHhhHHHHHhCC-----------Ccccccccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKV----RSKCNHIFHQTCIDDWLDDH-----------STCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~----~~~C~H~Fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~~ 170 (184)
.+...+|+||++.+.++..++. .++|+|.||..|+.+|++.. .+||+||+++...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3467799999999988555542 23699999999999999742 4799999988643
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=1.7e-11 Score=77.44 Aligned_cols=45 Identities=22% Similarity=0.557 Sum_probs=38.7
Q ss_pred CCccCcccccccccCCcceeccCCCCc-ccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHI-FHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
++..|+||++.+.+ ++.+||||. ||..|+..| ..||+||.++...
T Consensus 23 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 45579999999877 667789999 999999998 8899999988654
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=2.2e-11 Score=83.63 Aligned_cols=45 Identities=31% Similarity=0.744 Sum_probs=39.6
Q ss_pred CCccCcccccccccCCcceecc-CCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+...|+||++.+.. ++.+ +|||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 56789999999977 6666 8999999999999997 88999999874
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=84.31 Aligned_cols=52 Identities=27% Similarity=0.591 Sum_probs=43.6
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC-Ccccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH-STCPLCRGRVRRI 170 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 170 (184)
...+...|+||++.+.. ++.++|||.||..|+..|+..+ .+||.||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34577899999999987 5667899999999999999754 4999999988653
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.6e-10 Score=69.62 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=39.5
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCc-ccHhhHHHHHhCCCcccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHI-FHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
...+...|.||++...+ .+++||||. ||..|+.. ...||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 33467889999998876 677789999 99999984 47899999988653
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=5.4e-10 Score=87.30 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=44.0
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC-CCccccccccccc
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-HSTCPLCRGRVRR 169 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 169 (184)
...+...|+||++.|.+ ++.++|||.||..||..|+.. +.+||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34478899999999998 888899999999999999975 4559999998854
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.95 E-value=1.8e-09 Score=79.17 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=44.9
Q ss_pred ccCCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC-CCcccccccccccc
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-HSTCPLCRGRVRRI 170 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 170 (184)
....+...|+||++.|.+ ++.++|||.|+..||..|+.. +.+||+||.++...
T Consensus 101 ~~ip~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 101 REIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCcHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 334578899999999998 888899999999999999975 45799999988543
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.2e-10 Score=70.69 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=36.8
Q ss_pred CCccCcccccccccCCcceeccCCCCc-ccHhhHHHHHhCCCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHI-FHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
+...|+||++.+.+ ++++||||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34579999999877 667789999 99999964 3789999998865
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=5.9e-10 Score=73.55 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=38.8
Q ss_pred CCccCcccccccccCCcceeccC-CCCcccHhhHHHHHhCC------Ccccc--cccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSK-CNHIFHQTCIDDWLDDH------STCPL--CRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~~------~~CP~--Cr~~ 166 (184)
+...|+||++.|.+ ++.++ |||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 56789999999988 77775 99999999999999753 58999 9855
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.85 E-value=4.5e-10 Score=71.75 Aligned_cols=45 Identities=27% Similarity=0.747 Sum_probs=37.9
Q ss_pred CCccCcccccccccCCcceeccCCCCc-ccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHI-FHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
+...|.||++.+.+ .+++||||. ||..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 34579999999877 677789999 999999876 4999999988664
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.82 E-value=2e-09 Score=64.99 Aligned_cols=48 Identities=27% Similarity=0.734 Sum_probs=36.5
Q ss_pred CCCccCcccccccccCCcceeccCCC--C---cccHhhHHHHHh--CCCcccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCN--H---IFHQTCIDDWLD--DHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~--H---~Fh~~Ci~~w~~--~~~~CP~Cr~~~~ 168 (184)
++...|.||+++. ++.+ ..||. | .||..|+.+|+. .+.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER--FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC--CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce--ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3667899999974 3333 34665 4 899999999995 4689999998764
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=1.2e-08 Score=67.07 Aligned_cols=51 Identities=25% Similarity=0.701 Sum_probs=39.3
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC--------CCcccc--cccc--ccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD--------HSTCPL--CRGR--VRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~--------~~~CP~--Cr~~--~~~ 169 (184)
+..+|+||++.+...+.+. +.+|||.||.+|+..++.. ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~-l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTT-IAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEE-ETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceE-cCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 5668999999987654433 3369999999999999852 247999 9987 544
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=1.2e-08 Score=61.78 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=44.4
Q ss_pred ccCcccccccccCCcceecc-CCCCcccHhhHHHHHhCCCcccccccccccccCCCC
Q 042206 120 STCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAWPSV 175 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 175 (184)
..|+|+++.+.+ ++.. ++||.|...||.+|++.+.+||+.+.++....+..+
T Consensus 4 ~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 579999999987 6766 799999999999999888889999999876555443
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.64 E-value=4.5e-09 Score=84.72 Aligned_cols=45 Identities=29% Similarity=0.747 Sum_probs=39.3
Q ss_pred CCccCcccccccccCCcceeccCCCCc-ccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHI-FHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
++..|+||++.+.. ++.+||||. ||..|+..| ..||+||.++...
T Consensus 294 ~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 56789999999987 677789999 999999988 7899999988653
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.8e-08 Score=77.50 Aligned_cols=49 Identities=29% Similarity=0.602 Sum_probs=41.1
Q ss_pred CCCccCcccccccccCCcceec-cCCCCcccHhhHHHHHhCC--Ccccc--ccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVR-SKCNHIFHQTCIDDWLDDH--STCPL--CRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~~--~~CP~--Cr~~~~~ 169 (184)
.....|+||++.|.. ++. ..|||.|+..||..|+..+ ..||+ ||+.+..
T Consensus 179 ~~el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC----CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 467789999999988 665 3899999999999999754 57999 9987754
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.27 E-value=6.8e-07 Score=68.44 Aligned_cols=49 Identities=22% Similarity=0.695 Sum_probs=40.3
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC--Cccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH--STCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 169 (184)
....|.||.+....+..+. .|+|.||..|+..|++.+ ..||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4778999999999875443 499999999999999754 489999887643
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.26 E-value=5.1e-07 Score=59.04 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=37.4
Q ss_pred cCcccccccccCCcceeccCCCCcccHhhHHHHHh-CCCcccccccccccccC
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-DHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~~ 172 (184)
-|.+|--.+.. ..|.. ||+|+||.+|+..|.+ ..++||.|+.++..+..
T Consensus 3 fC~~C~~Pi~i--ygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--Eeeec-cccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 37777766654 33444 6999999999999985 57899999998866543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.62 E-value=0.0011 Score=42.66 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=40.3
Q ss_pred ccCCCCccCcccccccccCCcceeccCCC-CcccHhhHHHHHhCCCcccccccccccc
Q 042206 114 DAVNKTSTCVICLGEFRDGDECKVRSKCN-HIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
.....-..|-.|.-.... +..|. |..|..|+...+.....||+|+.++...
T Consensus 23 ~s~~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccccCcccChhhccccCC------eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 334466779999977654 22475 9999999999999999999999988664
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.85 E-value=0.0071 Score=36.59 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCC----Ccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDH----STCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~----~~CP~Cr~~ 166 (184)
.....|.+|.+. .++...-.|...||..|+.+.+... =.||.|+..
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456779999742 3344444688999999999887542 269999754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.52 E-value=0.023 Score=36.99 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL 154 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~ 154 (184)
++..|.||.+.+... .+...+.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHHHh
Confidence 456799999864322 222235799999999999843
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.03 E-value=0.2 Score=31.43 Aligned_cols=37 Identities=19% Similarity=0.506 Sum_probs=24.9
Q ss_pred cCCCCccCcccccccccCCcceeccCCCCcccHhhHHHH
Q 042206 115 AVNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDW 153 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w 153 (184)
....+..|.||- .+..++..+ ..-|+-+||..|+.+-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 344778899986 333333322 2248899999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.36 E-value=0.14 Score=30.20 Aligned_cols=46 Identities=22% Similarity=0.650 Sum_probs=30.9
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCcccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~ 166 (184)
..+..|.+|... .++...-.|...||..|+.+-+.. .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 366789999863 233334457788999999875432 2359999653
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.19 E-value=0.11 Score=30.87 Aligned_cols=50 Identities=18% Similarity=0.470 Sum_probs=33.2
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-----CCCcccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-----DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----~~~~CP~Cr~~ 166 (184)
++...|++|...+..+......-.|..=||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356679999988865443333335777799999864321 34569999753
No 79
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.90 E-value=0.068 Score=30.93 Aligned_cols=45 Identities=24% Similarity=0.697 Sum_probs=29.7
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~ 165 (184)
..+..|.+|... + .+...-.|...||..|+.+-+.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 366779999874 2 33444467788999999864432 224888854
No 80
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.22 E-value=0.14 Score=32.64 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=33.1
Q ss_pred CCCccCccccccc-ccCCcceeccCCCCcccHhhHHHHHh--CCCccccccccc
Q 042206 117 NKTSTCVICLGEF-RDGDECKVRSKCNHIFHQTCIDDWLD--DHSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~-~~~~~~~~~~~C~H~Fh~~Ci~~w~~--~~~~CP~Cr~~~ 167 (184)
.++..|.+|...- ..++.+...-.|.-.||..|+.+-.. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4677899998754 22334444446777899999975432 223599996643
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.16 E-value=0.11 Score=30.71 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=29.6
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~ 166 (184)
.+..|.+|.+. ..+...-.|...||..|+.+-+.. .-.||.|+..
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 56679999852 233333357788999999864432 2259999654
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.30 E-value=0.1 Score=38.67 Aligned_cols=46 Identities=26% Similarity=0.536 Sum_probs=31.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~~ 167 (184)
.+..|.+|... .++...-.|...||..|+.+-+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 55679999743 233444467889999999876643 23599997643
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.07 E-value=0.18 Score=30.84 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=33.7
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCcccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~~~ 168 (184)
.+...|.+|..... ++.....-.|.--||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45567999987753 3333333457788999999765432 346999987654
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.23 E-value=4.4 Score=25.60 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=39.2
Q ss_pred CCccCcccccccccCCc--cee-ccCCCCcccHhhHHHHH-hCCCccccccccccc-ccCCCCCC
Q 042206 118 KTSTCVICLGEFRDGDE--CKV-RSKCNHIFHQTCIDDWL-DDHSTCPLCRGRVRR-IAWPSVTT 177 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~--~~~-~~~C~H~Fh~~Ci~~w~-~~~~~CP~Cr~~~~~-~~~~~~~~ 177 (184)
....|.||-+++..... +.+ ...|+--.|..|+.-=. ..+..||.|++.+.. .-.|.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~G 79 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEG 79 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTT
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccc
Confidence 55689999998743322 222 33466668999988443 567899999998853 33444443
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.99 E-value=0.16 Score=36.72 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=31.3
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~~ 167 (184)
.+..|.+|... .++...-.|...||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45569999843 233444467789999999876543 23599997643
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.57 E-value=0.34 Score=29.47 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=32.6
Q ss_pred CCCccCccccccc-ccCCcceeccCCCCcccHhhHHHHHh--CCCcccccccc
Q 042206 117 NKTSTCVICLGEF-RDGDECKVRSKCNHIFHQTCIDDWLD--DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~-~~~~~~~~~~~C~H~Fh~~Ci~~w~~--~~~~CP~Cr~~ 166 (184)
.++..|.+|...- ..++.+...-.|.-.||..|+..-.. ..=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3667899998764 33344444446888999999975332 12358888653
No 87
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.48 E-value=0.67 Score=41.87 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=43.5
Q ss_pred CCCccCcccccccccCCcceeccCCC-CcccHhhHHHHHhCCCcccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCN-HIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
-+...|+|-++.+.+ ++.++-| +.|-...|.+|+..+.+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 467789999999999 8888887 5899999999999899999999888643
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.48 E-value=0.19 Score=29.42 Aligned_cols=46 Identities=24% Similarity=0.701 Sum_probs=30.9
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~~ 167 (184)
.+..|.+|... + .+...-.|...||..|+.+-+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999864 2 33444467888999999864432 22599997654
No 89
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.99 E-value=0.37 Score=30.88 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCcccccccc
Q 042206 116 VNKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~ 166 (184)
..++..|.+|...-.. +.+...-.|...||..|+.+=+.. .=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3466789999876432 233444467889999999754432 2249999764
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.90 E-value=0.23 Score=32.99 Aligned_cols=47 Identities=28% Similarity=0.578 Sum_probs=30.3
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~ 165 (184)
-..|.+|...-.+++.+...-.|...||..|+.+-+.. .=.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 33688888653333444444468899999999765532 225888864
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.69 E-value=0.33 Score=28.96 Aligned_cols=45 Identities=22% Similarity=0.544 Sum_probs=30.2
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~ 166 (184)
.+..|.+|.+. ..+...-.|...||..|+.+-+.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 56679999864 233444467788999999864432 2259999653
No 92
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=82.41 E-value=0.96 Score=28.13 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=32.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH------hCCCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL------DDHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~------~~~~~CP~Cr~~~ 167 (184)
+...|.+|...|..-..---...||.+||..|....+ +....|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 5567999999997543323344699999999976432 1223466665544
No 93
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.02 E-value=1.1 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.659 Sum_probs=24.9
Q ss_pred CCCccCcccccccccCCcceecc-CCCCcccHhhHH
Q 042206 117 NKTSTCVICLGEFRDGDECKVRS-KCNHIFHQTCID 151 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~ 151 (184)
.....|.+|...+..++.....- .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35668999999987766555454 577789999974
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.98 E-value=2.2 Score=28.08 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=24.0
Q ss_pred CCccCcccccccc-----cCCcceeccCCCCcccHhhHH
Q 042206 118 KTSTCVICLGEFR-----DGDECKVRSKCNHIFHQTCID 151 (184)
Q Consensus 118 ~~~~C~ICl~~~~-----~~~~~~~~~~C~H~Fh~~Ci~ 151 (184)
....|.+|+..-. .++++.....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4567999987632 233455555799999999995
No 95
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=80.93 E-value=1.3 Score=27.99 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=36.3
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHH-------hCCCcccccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL-------DDHSTCPLCRGRVRRI 170 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-------~~~~~CP~Cr~~~~~~ 170 (184)
.+...|.+|...|..-..---...||++||..|..... +....|-.|-..+...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 35668999999997643323344699999999976532 1234688886666543
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=80.47 E-value=0.31 Score=32.87 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=31.3
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~ 165 (184)
....|..|-..|..-..---...||.+||..|..........|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 445799999998753322334579999999997766555677888844
No 97
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.80 E-value=2.1 Score=26.63 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHH--------hCCCcccccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL--------DDHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~--------~~~~~CP~Cr~~~~ 168 (184)
.+...|.+|...|..-..---...||++||..|..... +....|-.|-..+.
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 35668999999997643323344699999999976542 12235777755443
No 98
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.60 E-value=0.62 Score=29.61 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=30.4
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~ 165 (184)
..+..|.+|... + ++...-.|.-.||..|+.+=+.. .-.||.|+.
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 366689999864 2 33334456778999999775532 225999965
No 99
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.44 E-value=0.72 Score=25.77 Aligned_cols=44 Identities=30% Similarity=0.681 Sum_probs=27.4
Q ss_pred cCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCccccccc
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~ 165 (184)
.|.+|...-.. +.+...-.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765432 233334467889999999764432 224888854
No 100
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=79.40 E-value=1.4 Score=26.66 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=24.0
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHH
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDD 152 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~ 152 (184)
..|.+|...|..-..---...||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999875432223446999999999753
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.43 E-value=0.63 Score=30.67 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD 155 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~ 155 (184)
++..|.+|.+.-.. +++.....|+..||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 56689999876322 22233446889999999987764
No 102
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=78.32 E-value=9.4 Score=23.48 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 042206 32 CLILFLFYICYYLF 45 (184)
Q Consensus 32 ~li~~l~~~~~~~~ 45 (184)
+++.+++++++.++
T Consensus 22 lliGllllliwk~~ 35 (79)
T 2knc_B 22 LLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444333
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.96 E-value=1.3 Score=26.12 Aligned_cols=50 Identities=26% Similarity=0.615 Sum_probs=32.9
Q ss_pred CCCccCccccccccc-CCcceeccCCCCcccHhhHHHHHh-------CCCcccccccc
Q 042206 117 NKTSTCVICLGEFRD-GDECKVRSKCNHIFHQTCIDDWLD-------DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~-~~~~~~~~~C~H~Fh~~Ci~~w~~-------~~~~CP~Cr~~ 166 (184)
.++..|.+|...... +..+...-.|.-.||..|+.+-+. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 366789999976533 234444446788999999886331 22359988654
No 104
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=76.71 E-value=6.8 Score=26.74 Aligned_cols=49 Identities=16% Similarity=0.405 Sum_probs=32.3
Q ss_pred CCCccCcccccccc-cCCcceeccCCCCcccHhhHHHHHh-C---CCccccccc
Q 042206 117 NKTSTCVICLGEFR-DGDECKVRSKCNHIFHQTCIDDWLD-D---HSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~-~~~~~~~~~~C~H~Fh~~Ci~~w~~-~---~~~CP~Cr~ 165 (184)
.....|.+|...|. ....-.....|.|.+|..|-..-.. + .-.|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 36678999999994 3333456667999999999543211 1 113888865
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.35 E-value=0.37 Score=30.56 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=33.9
Q ss_pred CCccCccccccccc-CCcceeccCCCCcccHhhHHHHHh--------CCCcccccccccc
Q 042206 118 KTSTCVICLGEFRD-GDECKVRSKCNHIFHQTCIDDWLD--------DHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-~~~~~~~~~C~H~Fh~~Ci~~w~~--------~~~~CP~Cr~~~~ 168 (184)
.+..|.+|...-.. ++.+...-.|...||..|+.+-+. ..=.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 45679999976432 234444446788999999986543 1235999976543
No 106
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.12 E-value=0.57 Score=34.08 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=28.9
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhC----CCcccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~ 166 (184)
+..|.+|.+. + .+...-.|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3469999844 2 23334457788999999764432 2259999765
No 107
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.93 E-value=1.5 Score=29.62 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=25.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHH
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDD 152 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~ 152 (184)
+...|.+|...|..-..---...||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 44579999999975433233447999999999654
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.54 E-value=1.6 Score=27.59 Aligned_cols=50 Identities=16% Similarity=0.465 Sum_probs=33.6
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh------CCCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD------DHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~------~~~~CP~Cr~~~ 167 (184)
+...|.+|...|..-..-.....||++||..|...+.. ....|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 45579999999975433333457999999999765431 234577775544
No 109
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.54 E-value=2.9 Score=26.02 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=25.6
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHH
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDD 152 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~ 152 (184)
.+...|.+|...|..-..---...||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 355689999999965432223446999999999653
No 110
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.03 E-value=4.8 Score=24.62 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=30.8
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-----CCCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-----DHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----~~~~CP~Cr~~~ 167 (184)
+...| +|...+..+......-.|..=||..|+.---. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44556 89887753333233335777799999852211 355799998654
No 111
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.54 E-value=1.7 Score=32.24 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=26.0
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHH
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDD 152 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~ 152 (184)
++..|.+|...|..-..-.-...||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45789999999975433233457999999999754
No 112
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.82 E-value=1.8 Score=32.25 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh--------CCCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD--------DHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~--------~~~~CP~Cr~~~ 167 (184)
++..|.+|...|..-..-.-...||++||..|...... ....|-.|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 45689999999976433333557999999999764321 123577775544
No 113
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.48 E-value=1 Score=32.08 Aligned_cols=48 Identities=21% Similarity=0.489 Sum_probs=31.6
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH-----hCCCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL-----DDHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-----~~~~~CP~Cr~~ 166 (184)
+...| +|......+......-.|..-||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 55678 9998765444333344677889999985221 134579999764
No 114
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.95 E-value=14 Score=22.90 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCCccCcccccccccCCcceecc-CCCCcccHhhHHHHHhC
Q 042206 117 NKTSTCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWLDD 156 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~ 156 (184)
.....|.+|.+.+++.--+. .+ .=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 46678999999987643221 11 12599999999988863
No 115
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.78 E-value=6.7 Score=27.08 Aligned_cols=45 Identities=20% Similarity=0.445 Sum_probs=30.7
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-----------CCCccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-----------DHSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----------~~~~CP~Cr~ 165 (184)
..+..|.+|-+. .++.-.-.|-..||..|+.+=+. ..=.||.|+.
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356789999864 23333335778999999997653 1225999964
No 116
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=68.59 E-value=2.7 Score=24.49 Aligned_cols=43 Identities=30% Similarity=0.607 Sum_probs=29.6
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLC 163 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~C 163 (184)
..|..|...+... .....+.|++.|+.+|=.---..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999988532 224466899999999943333455678887
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.92 E-value=4 Score=26.91 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=22.6
Q ss_pred cCccccccccc------CCcceeccCCCCcccHhhHHHH
Q 042206 121 TCVICLGEFRD------GDECKVRSKCNHIFHQTCIDDW 153 (184)
Q Consensus 121 ~C~ICl~~~~~------~~~~~~~~~C~H~Fh~~Ci~~w 153 (184)
.|.+|+..-.. ++++.....|+..||..|+..+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 58999876422 2344445568899999998754
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.62 E-value=2.9 Score=25.36 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH---------hCCCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL---------DDHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~---------~~~~~CP~Cr~~ 166 (184)
....| +|......+.. ...-.|..=||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~M-I~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFM-ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCE-EECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCE-EEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34556 89887653322 2233577789999985211 245679999764
No 119
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.34 E-value=1.9 Score=27.79 Aligned_cols=46 Identities=26% Similarity=0.443 Sum_probs=29.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh---CCCccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD---DHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~CP~Cr~ 165 (184)
+...| ||-.....+. ....-.|.--||..|+..=.. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 45567 8876654433 333446788899999875332 2346999963
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.24 E-value=7.9 Score=26.24 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=29.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH------h-----CCCccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL------D-----DHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~------~-----~~~~CP~Cr~ 165 (184)
.+..|.+|-+. .++.-.-.|-..||..|+.+-+ + ..=.|+.|+-
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 55679999854 3334344577899999999752 1 1235999954
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=66.07 E-value=2.5 Score=27.29 Aligned_cols=12 Identities=25% Similarity=0.946 Sum_probs=10.8
Q ss_pred cccHhhHHHHHh
Q 042206 144 IFHQTCIDDWLD 155 (184)
Q Consensus 144 ~Fh~~Ci~~w~~ 155 (184)
.||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=66.04 E-value=2.5 Score=27.23 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=10.8
Q ss_pred cccHhhHHHHHh
Q 042206 144 IFHQTCIDDWLD 155 (184)
Q Consensus 144 ~Fh~~Ci~~w~~ 155 (184)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 123
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.06 E-value=10 Score=21.59 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 042206 17 RLLVLTTPLV 26 (184)
Q Consensus 17 ~~~~~~~~iv 26 (184)
-+++++++++
T Consensus 11 p~wiIi~svl 20 (54)
T 2knc_A 11 PIWWVLVGVL 20 (54)
T ss_dssp CHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3444443333
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=64.08 E-value=5.1 Score=26.24 Aligned_cols=44 Identities=23% Similarity=0.567 Sum_probs=26.6
Q ss_pred CCCccCcccccccccCCcceecc--CCCCcccHhhHHHHHhC----CCcccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRS--KCNHIFHQTCIDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~--~C~H~Fh~~Ci~~w~~~----~~~CP~Cr~~ 166 (184)
..+..|.+|.+ +.++...- .|...||..|+. +.. .-.||.|+-.
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 46677999983 22333332 377889999997 432 1247766543
No 125
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.38 E-value=6.9 Score=23.22 Aligned_cols=43 Identities=21% Similarity=0.541 Sum_probs=29.9
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
....|+-|-..+..++.+.. .-+..||..| ..|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE--ETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEE--eCccEecccc--------CeECCCCCCCCCC
Confidence 45679999998875444322 2577889888 5677887777554
No 126
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=63.36 E-value=14 Score=19.12 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 042206 34 ILFLFYICYYL 44 (184)
Q Consensus 34 i~~l~~~~~~~ 44 (184)
+.++++.+.++
T Consensus 17 iaIVVWtiv~i 27 (36)
T 1pi7_A 17 IAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.90 E-value=4.3 Score=26.42 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=32.6
Q ss_pred CccCcccccccccCCcceecc-CCCCcccHhhHHHHH---h-------CCCccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWL---D-------DHSTCPLCRGRV 167 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~---~-------~~~~CP~Cr~~~ 167 (184)
...|.+|...+..+......- .|..=||..|+.--- + ..-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999986655544442 477779999975221 0 344699997653
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.20 E-value=4.1 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=29.2
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...|+-|-..+..++.+. .-+..||.+| ..|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCC--------CCCCCCCCccCC
Confidence 457999999888665433 2577889888 568888887754
No 129
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.15 E-value=1.7 Score=26.18 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH----hCCCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL----DDHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~----~~~~~CP~Cr~~ 166 (184)
+...| +|-.....++.....-.|..=||..|+.--- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 55568 7987765543323333577779999976431 134569999754
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.98 E-value=6.2 Score=23.10 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=27.4
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...|+-|-..+..++.+. . .-+..||..| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-E-YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-C-STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-E-ECccccCccc--------CeECCCCCcCCC
Confidence 346888888887643322 2 3577888888 567777777654
No 131
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=61.72 E-value=2.1 Score=23.98 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=26.7
Q ss_pred cCcccccccccCCcceecc-CCCCcccHhhHHHHH----hCCCcccccc
Q 042206 121 TCVICLGEFRDGDECKVRS-KCNHIFHQTCIDDWL----DDHSTCPLCR 164 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~----~~~~~CP~Cr 164 (184)
.|.+|...+..++.....- .|..=||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888875544333333 477679999965211 2455688774
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=61.30 E-value=3 Score=24.95 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=6.7
Q ss_pred CCccCccccccccc
Q 042206 118 KTSTCVICLGEFRD 131 (184)
Q Consensus 118 ~~~~C~ICl~~~~~ 131 (184)
+-..|..|-..+..
T Consensus 26 ~CF~C~~C~~~L~~ 39 (76)
T 1iml_A 26 PCLKCEKCGKTLTS 39 (76)
T ss_dssp TTCBCTTTCCBCCT
T ss_pred CCCCccccCccCCC
Confidence 34455555554443
No 133
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.83 E-value=7.3 Score=23.64 Aligned_cols=40 Identities=23% Similarity=0.530 Sum_probs=29.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
....|+-|-..+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45679999998876654432 467899888 57888888775
No 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=60.40 E-value=2.4 Score=31.70 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=25.0
Q ss_pred cCcccccccccCCcceeccCCCCcccHhhHHHHHhC-----CCccccccc
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-----~~~CP~Cr~ 165 (184)
.|.+|...-. ++.+...-.|...||..|+.+=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5788876432 2233344467889999999864431 225999965
No 135
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.30 E-value=9.3 Score=23.02 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.2
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
....|+-|-..+. ++.+ ..-+..||.+| ..|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v---~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL---IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC---CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE---EECcceeCCCC--------CEeCCCCCccCCC
Confidence 4567999998887 3322 23577788888 5688887777543
No 136
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.30 E-value=0.97 Score=27.87 Aligned_cols=44 Identities=27% Similarity=0.661 Sum_probs=27.3
Q ss_pred cCcccccccccCCcceeccCCCCcccHhhHHHHHhC-----CCccccccc
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-----~~~CP~Cr~ 165 (184)
.|.+|...-. ++.+...-.|...||..|+.+=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888886432 2333334467789999999854421 224887754
No 137
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=60.04 E-value=20 Score=20.29 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042206 24 PLVISSVVCLILFLFYICYYLF 45 (184)
Q Consensus 24 ~ivi~~iv~li~~l~~~~~~~~ 45 (184)
++++++++..++++.++.+.++
T Consensus 13 wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444444444443333
No 138
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=60.03 E-value=1 Score=27.77 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=25.6
Q ss_pred cCcccccccccCCcceeccCCCCcccHhhHHHHHhC----C-Cccccccc
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD----H-STCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~----~-~~CP~Cr~ 165 (184)
.|.+|...-.. +.+...-.|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654322 222333357788999999865532 1 35888864
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.30 E-value=9.2 Score=22.38 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=27.7
Q ss_pred CccCccccccccc--CCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 119 TSTCVICLGEFRD--GDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...|+-|-..+.. ++.+ +. .-+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~-a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-IS-FEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EE-CSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcce-EE-ECCcccCccc--------CEeccCCCcCCC
Confidence 4568889888875 2232 22 2577899888 568888777754
No 140
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=58.94 E-value=5.5 Score=28.73 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=33.5
Q ss_pred CccCcccccccccCCc---ceeccCCCCcccHhhHHHH------Hh-----CCCccccccccc
Q 042206 119 TSTCVICLGEFRDGDE---CKVRSKCNHIFHQTCIDDW------LD-----DHSTCPLCRGRV 167 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~---~~~~~~C~H~Fh~~Ci~~w------~~-----~~~~CP~Cr~~~ 167 (184)
+..|++|...+..++. ....-.|..=||..|..-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3469999999988762 3334457888999997421 11 146899997643
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=58.93 E-value=2.7 Score=25.12 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=28.7
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh---CCCccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD---DHSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~CP~Cr~ 165 (184)
.+...| ||-.... ++.....-.|..=||..|+..--. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 456677 9987664 322222335777799999863221 3346888864
No 142
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.76 E-value=2 Score=34.90 Aligned_cols=50 Identities=18% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-------CCCccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-------DHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-------~~~~CP~Cr~~~ 167 (184)
+...|..|...|..-..-..+..||++||..|...+.. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45679999999865433233447999999999876541 234577774443
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.17 E-value=1.1 Score=26.98 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=25.7
Q ss_pred cCcccccccccCCcceeccCCCCcccHhhHHHHHhC-----CCccccccc
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDD-----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-----~~~CP~Cr~ 165 (184)
.|.+|...-.. +.+...-.|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677754222 232333357789999999854431 225888854
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=58.11 E-value=9.3 Score=23.52 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=28.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
....|+-|-..+.. .. +. .-+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VK-ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EE-SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EE-ECCceECccC--------CEecCCCCCCCC
Confidence 45679999988875 22 22 3678899988 568888777754
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.07 E-value=6.7 Score=23.58 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
....|+-|-..+.. +. +. .-+..||.+| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VK-LRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EE-CSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCCccccCCCCccC-cE--EE-ECcceeCcCc--------CeeCCCCCCCCC
Confidence 45689999998875 22 22 3678899988 467788777654
No 146
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.76 E-value=5.1 Score=23.47 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=26.1
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
..|+.|-..+...+.+.. .-+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccC--------CcccccCCccCC
Confidence 468888888876543222 2567788887 457777766644
No 147
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.55 E-value=9.4 Score=22.28 Aligned_cols=40 Identities=28% Similarity=0.599 Sum_probs=24.0
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
...|+.|-..+...+.... .-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV--ALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE--CSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE--ECCCeEcccC--------CcccccCCcCC
Confidence 3467888777665332221 2466777777 45777776663
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.16 E-value=10 Score=22.96 Aligned_cols=43 Identities=19% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 171 (184)
....|+-|-..+...+.+. .-+..||..| ..|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 4567999999886655543 2567899988 56778877775544
No 149
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=55.02 E-value=9.3 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042206 24 PLVISSVVCLILFLFYICY 42 (184)
Q Consensus 24 ~ivi~~iv~li~~l~~~~~ 42 (184)
++++++++..++++.++.+
T Consensus 10 WiIi~svl~GLLLL~Lii~ 28 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLIL 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=54.68 E-value=6.7 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=26.8
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...|+-|-..+. ++. +..-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~---~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV---VNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE---ECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE---EEECccccccCc--------CEECCCCCCCCC
Confidence 346888888887 332 223577888888 568888877754
No 151
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.24 E-value=6.8 Score=22.82 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=25.3
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
...|+-|-..+.. +.+ . .-+..||.+| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVI--K-AMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCE--E-ETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEE--E-ECcccccccC--------CEeCCCCCcCCCC
Confidence 4568888887763 222 2 2567788887 4677777766543
No 152
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.01 E-value=7.4 Score=22.64 Aligned_cols=39 Identities=26% Similarity=0.592 Sum_probs=25.5
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...|+-|-..+.. +. +. .-+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VT-YREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EE-SSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ce--EE-ECccccCCCC--------CccCCCCCcCCc
Confidence 3468888887764 22 22 3567788887 567778777643
No 153
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.47 E-value=6.2 Score=24.06 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=28.8
Q ss_pred CCccCcccccccccCCcceecc--CCCCcccHhhHHHHHh---------CCCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRS--KCNHIFHQTCIDDWLD---------DHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~--~C~H~Fh~~Ci~~w~~---------~~~~CP~Cr~~ 166 (184)
+...| ||-.....+.. ...- .|..=||..|+.---. .+-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~M-I~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSM-IQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCE-EECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCE-EEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 55667 78877433322 2222 4777899999853211 24569999764
No 154
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=53.45 E-value=47 Score=22.14 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=6.3
Q ss_pred CCcchhHHHHHHH
Q 042206 11 PNDEGLRLLVLTT 23 (184)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (184)
|.+..-+++.++.
T Consensus 62 P~t~~~r~~~~~~ 74 (139)
T 3eff_K 62 PVTLWGRLVAVVV 74 (139)
T ss_dssp CCSSHHHHHHHHH
T ss_pred CCCcCHHHHHHHH
Confidence 5555555444433
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.90 E-value=7.8 Score=23.33 Aligned_cols=41 Identities=22% Similarity=0.558 Sum_probs=28.4
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
...|+.|-..+..++.+.. .-+..||..| ..|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 3579999998876554322 2567889888 567778777654
No 156
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=52.71 E-value=8.7 Score=26.84 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCccCcccccccccCC-cceeccCCCCcccHhhHHHHHhCCC--ccccccc
Q 042206 118 KTSTCVICLGEFRDGD-ECKVRSKCNHIFHQTCIDDWLDDHS--TCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~-~~~~~~~C~H~Fh~~Ci~~w~~~~~--~CP~Cr~ 165 (184)
++..|++|...|.--. .-.....|.|.+|..|- .|..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5678999999874322 23445679999999996 2332222 3777754
No 157
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.01 E-value=9.1 Score=22.94 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=26.5
Q ss_pred CCCccCcccccccccCCcceeccC--CC-CcccHhhHHHHHh----CCCcccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSK--CN-HIFHQTCIDDWLD----DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~~----~~~~CP~Cr~~ 166 (184)
.+...| +|-.... ++ ....-. |. .-||..|+. +. .+-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 355667 8987542 32 222223 44 579999997 32 23359999654
No 158
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.93 E-value=9.2 Score=22.72 Aligned_cols=39 Identities=23% Similarity=0.515 Sum_probs=26.5
Q ss_pred ccCccccccccc--CCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 120 STCVICLGEFRD--GDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
..|+-|-..+.. +... +. .-+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~-a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-IC-FQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EE-ETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EE-ECCcccCccc--------CChhhCCCcCC
Confidence 468999888874 2232 22 2577899988 56777777764
No 159
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.89 E-value=5.7 Score=24.60 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=28.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
....|+-|-..+. ++.+ . .-+..||.+| ..|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--V-ALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--E-ETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceEE--E-ECCccccccC--------CccCCCCCCCCCC
Confidence 4567999998884 3222 2 3678899988 5788888877643
No 160
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.89 E-value=10 Score=23.99 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=26.6
Q ss_pred CCCccCcccccccccCCcceeccC--CC-CcccHhhHHHHHh--CCCcccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSK--CN-HIFHQTCIDDWLD--DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~~--~~~~CP~Cr~~ 166 (184)
.+...| +|..... ++. ...-. |. .-||..|+.---. .+-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~M-I~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEM-IGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SCC-CCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CCE-eEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 355667 9987653 321 22223 44 4699999872111 23469999764
No 161
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.28 E-value=15 Score=25.79 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=25.9
Q ss_pred CCccCcccccccccCCcceecc--CCCCcccHhhHHHHHhC
Q 042206 118 KTSTCVICLGEFRDGDECKVRS--KCNHIFHQTCIDDWLDD 156 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~--~C~H~Fh~~Ci~~w~~~ 156 (184)
.+..|.+|-+. .++...- .|...||..||+.++..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 56789999853 3444443 58889999999999864
No 162
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=51.06 E-value=3 Score=27.23 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=16.0
Q ss_pred ccCCCCcccHhhHHHHHhCCCccccccccc
Q 042206 138 RSKCNHIFHQTCIDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 138 ~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~ 167 (184)
+..||+.|. .-+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 447999881 1123446899998754
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=50.97 E-value=9.9 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.570 Sum_probs=30.3
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
....|+-|-..+..++.+.. .-+..||..|+ .|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE--eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 44579999999886654332 25677998884 688888877654
No 164
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.06 E-value=9.3 Score=22.62 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=21.4
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
..|+-|-..+.. + .+..-+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~---~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R---VLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C---CBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-e---eEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 357777776654 1 2223566777777 45666655553
No 165
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.93 E-value=29 Score=21.28 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=28.3
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
....|+-|-..+...+.+. .-+..||..| ..|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL---ANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE---CSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEE---ECCCEECCCC--------CeeCCCCCCCCCC
Confidence 3457999988887655432 3677888888 4577777666543
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=47.99 E-value=5.1 Score=24.21 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=26.8
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
...|+.|-..+..++.+. .-+..||.+| ..|-.|+.+|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ---CDGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE---ETTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEE---eCCccccccc--------CccCCCCCCCCCC
Confidence 346888888886655432 2567788877 4577777766443
No 167
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=47.85 E-value=9.8 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=16.8
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHH
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWL 154 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~ 154 (184)
....|..|-..+..++... . .=+..||..|....+
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~-~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-L-INSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-E-CSSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEE-e-eCCEEEcHHHhHHHh
Confidence 4445555655554333211 1 234556666665554
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=47.69 E-value=7.6 Score=19.10 Aligned_cols=28 Identities=14% Similarity=0.457 Sum_probs=19.0
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhH
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCI 150 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci 150 (184)
..|+.|-...-..+.+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 36888888776654433 25678888883
No 169
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=46.74 E-value=2.6 Score=24.44 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=26.7
Q ss_pred CCCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-CCC---ccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-DHS---TCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~---~CP~Cr~ 165 (184)
.+...|.||+..--.+..-....-|.-.||..|--.|-. .++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 366789999965333222222334556677777555532 222 3666665
No 170
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.01 E-value=5 Score=20.52 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.8
Q ss_pred Cccccccccc
Q 042206 158 STCPLCRGRV 167 (184)
Q Consensus 158 ~~CP~Cr~~~ 167 (184)
..||+|.+.+
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 3566666554
No 171
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=45.67 E-value=19 Score=29.06 Aligned_cols=34 Identities=21% Similarity=0.557 Sum_probs=25.7
Q ss_pred CCccCcccccccccCCcceecc--CCCCcccHhhHHHHHh
Q 042206 118 KTSTCVICLGEFRDGDECKVRS--KCNHIFHQTCIDDWLD 155 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~--~C~H~Fh~~Ci~~w~~ 155 (184)
.+..|.+|-+. .++...- .|...||..||+.++.
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 56678888853 3445544 6889999999999984
No 172
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.49 E-value=4.8 Score=19.64 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=8.8
Q ss_pred CCccccccccccc
Q 042206 157 HSTCPLCRGRVRR 169 (184)
Q Consensus 157 ~~~CP~Cr~~~~~ 169 (184)
+..||+|+.....
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4578888876543
No 173
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=45.30 E-value=1.4 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.765 Sum_probs=16.2
Q ss_pred CCCCcccHhhHHHHHhCCCccc
Q 042206 140 KCNHIFHQTCIDDWLDDHSTCP 161 (184)
Q Consensus 140 ~C~H~Fh~~Ci~~w~~~~~~CP 161 (184)
.|+|.||..|-..|-. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999998865 5553
No 174
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=45.19 E-value=16 Score=29.20 Aligned_cols=46 Identities=17% Similarity=0.456 Sum_probs=27.9
Q ss_pred ccCcccccccccCCcceeccCCCCc--ccHhhHHHHHh--CCCcccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHI--FHQTCIDDWLD--DHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~--Fh~~Ci~~w~~--~~~~CP~Cr~~~~ 168 (184)
..|++=...+.. .++.. .|.|. |-..-+..... ..-.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAV-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEET-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCC-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 458876666644 33444 59997 55444444433 2346999988764
No 175
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.93 E-value=17 Score=29.27 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=27.4
Q ss_pred CccCcccccccccCCcceeccCCCCc--ccHhhHHHHHh--CCCccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHI--FHQTCIDDWLD--DHSTCPLCRGRV 167 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~--Fh~~Ci~~w~~--~~~~CP~Cr~~~ 167 (184)
...|++=...+.. .++.. .|.|. |-..-+..... ..-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~--PvRg~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSI-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSS--EEEET-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccc--cCcCC-cCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 3468876666544 34444 59997 44443433332 334699998766
No 176
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.74 E-value=14 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=27.0
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCccccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
..|+-|-..+..++.+.. .-+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 469999988874333221 2467788888 567788777653
No 177
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.46 E-value=13 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=25.2
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
..|+.|-..+. +.. +..-+..||.+| ..|-.|+..|.
T Consensus 16 ~~C~~C~~~I~-~~~---~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF---MVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCC---BCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceE---EEECCceecccc--------CCccCCCCccC
Confidence 36888888877 322 223567788887 56888877774
No 178
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.15 E-value=12 Score=21.70 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=24.6
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
...|+-|-..+.. +.+. .-+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT---YQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE---ETTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEE---ECccccccCc--------CEECCCCCCCC
Confidence 3468888887753 2222 2567788877 46777777765
No 179
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.95 E-value=10 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=24.5
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
..|+-|-..+.. +.+. .-+..||.+| ..|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEecc-ceEE---ECCceeCccC--------CccccCCCCCC
Confidence 369999988873 2222 3577888888 45666666654
No 180
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.59 E-value=9.4 Score=22.96 Aligned_cols=40 Identities=23% Similarity=0.517 Sum_probs=27.2
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
...|+-|-..+.. .. +..-+..||..| ..|..|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~---~~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-RI---LRAMGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-CC---EEETTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecc-ee---EEECCccccHHh--------cCcccCCCccCCC
Confidence 4568888888763 22 223577888888 5688888877543
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.13 E-value=16 Score=21.50 Aligned_cols=42 Identities=17% Similarity=0.408 Sum_probs=28.7
Q ss_pred CccCccccccccc---CCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 119 TSTCVICLGEFRD---GDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~---~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
...|+-|-..+.. +.... . .=+..||..| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVV-A-YEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEE-E-ETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeE-E-ECcceeCccc--------CEehhcCCCCCCC
Confidence 3569999988874 22322 2 2567899988 5788898887543
No 182
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.53 E-value=9.4 Score=21.98 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=24.7
Q ss_pred CCccCcccccccccCCcceeccC--CC-CcccHhhHHHHHh----CCCccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSK--CN-HIFHQTCIDDWLD----DHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~~----~~~~CP~Cr~ 165 (184)
+...| ||..... + .....-. |. .-||..|+. +. .+-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44556 8987642 2 2222223 44 569999997 32 2335898864
No 183
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.29 E-value=4.8 Score=23.37 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=25.0
Q ss_pred CccCcccccccccCCccee--ccC--CCCcccHhhHHHHHhC
Q 042206 119 TSTCVICLGEFRDGDECKV--RSK--CNHIFHQTCIDDWLDD 156 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~--~~~--C~H~Fh~~Ci~~w~~~ 156 (184)
...|+-|...++..+...- ... |+|.|+..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3468888877766553222 223 7888999998888643
No 184
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.80 E-value=15 Score=21.86 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=25.4
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
..|+-|-..+..+ . +. .-+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~-~--v~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VT-YRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-C--EE-SSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc-E--EE-ECCchhhhhh--------CCcccCCCcCC
Confidence 4688888887652 2 22 3577888888 56777877774
No 185
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=37.77 E-value=17 Score=20.79 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=26.8
Q ss_pred cCcccccccccCCcceeccCCCCccc--HhhHHHHHhCCCccccccccccc
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFH--QTCIDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh--~~Ci~~w~~~~~~CP~Cr~~~~~ 169 (184)
.|+-|-..+..++... . .-+..|| .+| ..|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v-~-a~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRV-T-YNNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEE-E-ETTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEE-E-ECCCccCCCCCC--------EECCCCCCcCCC
Confidence 5888888887643322 2 2577899 888 578888877754
No 186
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=36.80 E-value=11 Score=21.65 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=25.4
Q ss_pred CCccCcccccccccCCcceeccC--CC-CcccHhhHHHHHh--CCCccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSK--CN-HIFHQTCIDDWLD--DHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~~--~~~~CP~Cr~ 165 (184)
+..-| +|-.... + .....-. |. .-||..|+.---. .+-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 44556 8987642 3 2222223 54 5799999972111 2335998864
No 187
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=36.45 E-value=25 Score=21.88 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=26.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+-..|..|-..+... ... . .=|..||..|..+ .....|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~-~~~-~-~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANE-TFV-A-KDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSS-CCE-E-ETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcC-eeE-C-cCCEEEChhHhhh--hcCCccccCCCccc
Confidence 455677777666432 111 1 2456677777533 23457888888775
No 188
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.36 E-value=17 Score=24.01 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=29.5
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
....|+-|-..+.....+. .-+..||..| ..|-.|+..|.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 3467999998887532222 3678899998 67999988885
No 189
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=35.54 E-value=22 Score=21.05 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCccCcccccccccCCcceeccCC-CCcccHhhHHHHH
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKC-NHIFHQTCIDDWL 154 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C-~H~Fh~~Ci~~w~ 154 (184)
++..-|.||.++-.- + ...| +-+||..|..+--
T Consensus 6 ee~pWC~ICneDAtl----r-C~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDATL----R-CAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCCE----E-ETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCeE----E-ecCCCCceehHHHHHHHc
Confidence 366679999988432 3 4468 6899999987754
No 190
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.34 E-value=14 Score=21.98 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=26.5
Q ss_pred ccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccccc
Q 042206 120 STCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 170 (184)
..|+-|-..+.. +.+ . .-+..||.+| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~-~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--S-AMDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCE--E-ETTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeE--E-ECCCeEecCc--------CChhhCCCCCCCC
Confidence 468888888765 222 2 2567788888 5688888877543
No 191
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=34.27 E-value=3.2 Score=25.91 Aligned_cols=27 Identities=19% Similarity=0.580 Sum_probs=18.7
Q ss_pred eccCCCCcccHhhHHHHHh--CCCccccc
Q 042206 137 VRSKCNHIFHQTCIDDWLD--DHSTCPLC 163 (184)
Q Consensus 137 ~~~~C~H~Fh~~Ci~~w~~--~~~~CP~C 163 (184)
..+.|++.||..|-.+|=+ ...+|..-
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred EeCCCCCccccccCCchhhcCCCCChHHH
Confidence 3545999999999999822 23466554
No 192
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=33.93 E-value=2 Score=19.77 Aligned_cols=12 Identities=42% Similarity=0.991 Sum_probs=8.9
Q ss_pred cccHhhHHHHHh
Q 042206 144 IFHQTCIDDWLD 155 (184)
Q Consensus 144 ~Fh~~Ci~~w~~ 155 (184)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888888864
No 193
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=32.87 E-value=82 Score=18.93 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=21.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042206 11 PNDEGLRLLVLTTPLVISSVVCLILFLFYICY 42 (184)
Q Consensus 11 ~~~~~~~~~~~~~~ivi~~iv~li~~l~~~~~ 42 (184)
|...|+..-.+...+++.+++.++..+++-.+
T Consensus 7 PqmrgLl~~~lr~~i~~a~~lsl~~~~~~k~~ 38 (73)
T 1v54_I 7 PQMRGLLARRLRFHIVGAFMVSLGFATFYKFA 38 (73)
T ss_dssp CCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888877777777776666655555444443
No 194
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.21 E-value=15 Score=25.52 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=15.4
Q ss_pred ccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 138 RSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 138 ~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+..|||.|-.. .....||.|-.++.
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCCCcccCC------CCCCcCCCCCCcce
Confidence 44677777543 22347999977653
No 195
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=29.17 E-value=29 Score=20.94 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 042206 34 ILFLFYICY 42 (184)
Q Consensus 34 i~~l~~~~~ 42 (184)
+..++..||
T Consensus 27 lg~li~gcw 35 (90)
T 1zza_A 27 LGALILGCW 35 (90)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333343
No 196
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.78 E-value=20 Score=21.42 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=27.5
Q ss_pred CcccccccccCCcceeccCCCCcccHhhHHHHHh-----CCCcccccccc
Q 042206 122 CVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-----DHSTCPLCRGR 166 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----~~~~CP~Cr~~ 166 (184)
--||-..+..+......-.|.-=||..|+.---. ..-.||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3388876643333233335777799999853321 24569999764
No 197
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=50 Score=21.45 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=35.5
Q ss_pred CCccCccccccccc-CCcceeccCCCCcccHhhHHHHHhCCCcccccccccccccC
Q 042206 118 KTSTCVICLGEFRD-GDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 172 (184)
+-..|..|-..+.. +.. ... .=+..||..|..+-+..+..|..|..+|....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~-~~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTS-SYT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEEC-CEE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCe-EEE-ECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 34568888777752 111 112 356789999998877665589999888876444
No 198
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.60 E-value=26 Score=24.82 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=15.3
Q ss_pred cCcccccccccCCcceeccCCCCcccHhh
Q 042206 121 TCVICLGEFRDGDECKVRSKCNHIFHQTC 149 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~~~~C~H~Fh~~C 149 (184)
.|..|-..+...+.+.. .-++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC
Confidence 47777776654333221 2466777777
No 199
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.99 E-value=8.5 Score=22.72 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=25.2
Q ss_pred CccCcccccccccCCcceec-cCCCCcccHhhHHHHH---h-----CCCccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVR-SKCNHIFHQTCIDDWL---D-----DHSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~---~-----~~~~CP~Cr~ 165 (184)
...| ||-.....+..+.=- ..|..=||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3456 786655444322211 1376679999973211 0 1356999974
No 200
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.24 E-value=36 Score=23.56 Aligned_cols=9 Identities=22% Similarity=1.058 Sum_probs=4.1
Q ss_pred ccccccccc
Q 042206 159 TCPLCRGRV 167 (184)
Q Consensus 159 ~CP~Cr~~~ 167 (184)
.|-.|+..|
T Consensus 95 ~C~~C~~~L 103 (169)
T 2rgt_A 95 ACVVCKRQL 103 (169)
T ss_dssp BCTTTCCBC
T ss_pred cCCCCCCCC
Confidence 444444444
No 201
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.67 E-value=18 Score=30.14 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=29.4
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHh-----CCCcccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLD-----DHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----~~~~CP~Cr~~ 166 (184)
+...| +|...+..+.....+-.|.-=||..|+.---. ..-.||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 44445 89887653333333445777799999853221 23469999754
No 202
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.60 E-value=10 Score=22.65 Aligned_cols=17 Identities=35% Similarity=0.859 Sum_probs=10.3
Q ss_pred HHHhCCCcccccccccc
Q 042206 152 DWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 152 ~w~~~~~~CP~Cr~~~~ 168 (184)
+|+..--.||.|+.++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 34444456888877664
No 203
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=25.95 E-value=57 Score=19.26 Aligned_cols=8 Identities=13% Similarity=-0.134 Sum_probs=3.5
Q ss_pred CCcchhHH
Q 042206 11 PNDEGLRL 18 (184)
Q Consensus 11 ~~~~~~~~ 18 (184)
|..|.+-.
T Consensus 9 pF~YDY~t 16 (67)
T 2jp3_A 9 PFYYDWES 16 (67)
T ss_dssp GGGGGGHH
T ss_pred CcccchHH
Confidence 44444433
No 204
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.47 E-value=11 Score=22.46 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=10.1
Q ss_pred HHHhCCCcccccccccc
Q 042206 152 DWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 152 ~w~~~~~~CP~Cr~~~~ 168 (184)
+|+..--.||.|+.++.
T Consensus 5 ~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGGTCCCBCTTTCCBCE
T ss_pred HHHHHHhCCCCCCCcCe
Confidence 34444556777777654
No 205
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.13 E-value=61 Score=19.70 Aligned_cols=34 Identities=21% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCCCccCccccccccc-CCcceeccCCCCcccHhh
Q 042206 116 VNKTSTCVICLGEFRD-GDECKVRSKCNHIFHQTC 149 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~-~~~~~~~~~C~H~Fh~~C 149 (184)
......|+.|.+.|.- .+.-.....|.|..|.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4577889999998853 112233446888776666
No 206
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.00 E-value=31 Score=21.69 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCCccCcccccccccCCcceeccCCC---CcccHhhHHHHH--hCCCcccc-ccc
Q 042206 117 NKTSTCVICLGEFRDGDECKVRSKCN---HIFHQTCIDDWL--DDHSTCPL-CRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~~~~C~---H~Fh~~Ci~~w~--~~~~~CP~-Cr~ 165 (184)
.+...| ||-.... ++ ....-.|. .-||..|+.--- ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 455667 8986432 32 22222333 469999985211 12346999 974
No 207
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=23.88 E-value=70 Score=15.25 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042206 26 VISSVVCLILFLFYICY 42 (184)
Q Consensus 26 vi~~iv~li~~l~~~~~ 42 (184)
+|..++.++.++.+-+|
T Consensus 8 viaglvalltflafgfw 24 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444544444444333
No 208
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=23.69 E-value=1.1e+02 Score=24.36 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 042206 30 VVCLILFLFYI 40 (184)
Q Consensus 30 iv~li~~l~~~ 40 (184)
+.++++++.++
T Consensus 220 ~p~~ii~~~y~ 230 (502)
T 3odu_A 220 LPGIVILSCYC 230 (502)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 209
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.93 E-value=34 Score=24.25 Aligned_cols=39 Identities=15% Similarity=0.474 Sum_probs=24.7
Q ss_pred CccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 119 TSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
...|+.|-..+..++.+. .-+..||.+| ..|-.|+..|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI---GAGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEE---ETTEEECTTT--------CBCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEe---cCCCccchhc--------CCccccCCCCC
Confidence 345888888876554433 2466777777 45666666654
No 210
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.56 E-value=51 Score=18.59 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=10.7
Q ss_pred CCCccCcccccccccC
Q 042206 117 NKTSTCVICLGEFRDG 132 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~ 132 (184)
-+-..|+.|...+.-.
T Consensus 8 L~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 8 LEILACPACHAPLEER 23 (56)
T ss_dssp TTSCCCSSSCSCEEEE
T ss_pred HhheeCCCCCCcceec
Confidence 3556788888876543
No 211
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.42 E-value=81 Score=20.48 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+-..|..|-..+...+..... .=|..||..|..+-+.....|..|...+.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccC
Confidence 455666666666421111111 24556667776665543336777766654
No 212
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.45 E-value=45 Score=21.41 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=20.1
Q ss_pred CCccCccccccccc-CCcceeccCCCCcccHhhHHHHHhC
Q 042206 118 KTSTCVICLGEFRD-GDECKVRSKCNHIFHQTCIDDWLDD 156 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-~~~~~~~~~C~H~Fh~~Ci~~w~~~ 156 (184)
+-..|..|-..+.. +.... . .=+..||..|..+-+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~-~-~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCC-C-BTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeE-E-ECCeeechHHHHHHhCc
Confidence 55667777666653 11111 1 24566777777665543
No 213
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.26 E-value=45 Score=21.63 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=4.1
Q ss_pred Ccccccccc
Q 042206 122 CVICLGEFR 130 (184)
Q Consensus 122 C~ICl~~~~ 130 (184)
|+.|-..+.
T Consensus 66 C~~C~~~I~ 74 (126)
T 2xqn_T 66 CQGCHNAID 74 (126)
T ss_dssp CTTTCSBCC
T ss_pred CcccCCcCC
Confidence 444444444
No 214
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.92 E-value=48 Score=23.21 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCccCcccccccccCCcceeccCCCCcccHhhHHHHHhCCCcccccccccc
Q 042206 118 KTSTCVICLGEFRDGDECKVRSKCNHIFHQTCIDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~CP~Cr~~~~ 168 (184)
+...|..|-..+.... .. .=|..||..|..+- ....|..|...+.
T Consensus 86 ~CF~C~~C~~~L~~~~---f~-~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC---FS-RGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCC---EE-ETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCc---ee-ECCEeeecCccccc--cccccccCCCccC
Confidence 5566777766665421 11 24555666665442 2345666655554
No 215
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.81 E-value=50 Score=19.07 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=16.5
Q ss_pred CCcccccccccccccCCCCCCCCC
Q 042206 157 HSTCPLCRGRVRRIAWPSVTTADD 180 (184)
Q Consensus 157 ~~~CP~Cr~~~~~~~~~~~~~~~~ 180 (184)
+..||.|-.+.....=+.++++|-
T Consensus 18 k~~CP~CG~~T~~~hParfSp~Dk 41 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKFSLEDR 41 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCCCTTCT
T ss_pred cccCcCCCCcCCCCCCCCCCCCcc
Confidence 567999977766666566666654
No 216
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=20.52 E-value=1.4e+02 Score=22.94 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 042206 31 VCLILFLFYICYYLF 45 (184)
Q Consensus 31 v~li~~l~~~~~~~~ 45 (184)
++++++++++++.++
T Consensus 49 ~~LaglFa~~m~v~l 63 (290)
T 3ixz_B 49 VVMSGIFALCIYVLM 63 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444333
No 217
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.39 E-value=6.5 Score=30.80 Aligned_cols=49 Identities=14% Similarity=0.328 Sum_probs=32.4
Q ss_pred CCCccCcccccccccCCccee-ccCCC--CcccHhhHHHHHhCCCcccccccc
Q 042206 117 NKTSTCVICLGEFRDGDECKV-RSKCN--HIFHQTCIDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~-~~~C~--H~Fh~~Ci~~w~~~~~~CP~Cr~~ 166 (184)
.....|++|-..-... .++. -..=| |.+|..|-..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4678999998776542 1110 00123 567788888898788899999654
Done!