BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042207
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/520 (47%), Positives = 336/520 (64%), Gaps = 19/520 (3%)
Query: 2 ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
A+ +ENFL+C ++ N+ + K++YTQ++ Y SIL+ TIQN RF++ TPKP VIV
Sbjct: 1 ANPRENFLKCFSKHIPNNVAN-PKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVT 59
Query: 62 PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
P SHIQ+ I CS+ G+Q+R RSGGHD EG+SYIS VP+VV+DL N+ SI IDV T
Sbjct: 60 PSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQT 119
Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXX 181
AW++AGAT+GE+Y+ I + + L FP G CP+V L+R YG
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 182 XXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLK- 240
G++LDRKSMGEDLFWAIRGGGG +FG+I AWK++LV +PS T+ S +++++
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 241 RNLTRLVHRWQFVADKFDEDLI--TGVFLSSVNASTGGNRTVI-ASFESVFLGGVDGVIP 297
L +L ++WQ +A K+D+DL+ T ++ + G N+T + F S+F GGVD ++
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299
Query: 298 LMQKSFPELGLVEKECTETSWVRAVLHH--------ARFPIEASLDVLLNRSPVTKRFYK 349
LM KSFPELG+ + +C E SW+ + + A F E +LL+RS K +
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKE----ILLDRSAGKKTAFS 355
Query: 350 AKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYK 409
K DYV++P+PE A I E E++ G +L PYGG M EI ESAIPFPHRAG +Y+
Sbjct: 356 IKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYE 415
Query: 410 MSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSY 469
+ W E E E+HINW+R +++F TP+VS+NPR +Y+NYRD+D+G +Y
Sbjct: 416 LWYTASW--EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 473
Query: 470 KQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSL 509
QA IWG KYF NF+RLV VKT VDP+NFFRNEQSIP L
Sbjct: 474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/508 (41%), Positives = 307/508 (60%), Gaps = 24/508 (4%)
Query: 5 QENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQ 64
+ +FL CL ++ + +Y +++ +Y+S+ T++N +FL+ T KP I+ P
Sbjct: 10 ERDFLTCLTKDIP------PRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTN 63
Query: 65 VSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVP--YVVIDLINLRSISIDVEKTTA 122
SHIQ+ + C + HGM++RVRSGGHDYEGLSY S P + V+D+ +R++SID + TA
Sbjct: 64 ASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATA 123
Query: 123 WIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXXX 182
W+ +GA +G+LY+ IA S LGFPAGVC ++ +LLRKYG
Sbjct: 124 WVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDA 183
Query: 183 XXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRN 242
+GRLLDRK+MGED FWAIRGGGG SFG++ +W+V+L+ +P VTV + +K
Sbjct: 184 KVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEG 243
Query: 243 LTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKS 302
LV +WQ VA +DL+ + A FE+++LG ++ LM
Sbjct: 244 AIDLVTKWQTVAPALPDDLMIRIMAMGQG----------AMFEALYLGTCKDLVLLMTAR 293
Query: 303 FPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEI 362
FPELG+ C E +W+ +V + P + ++ LLNR+ K F K KSDYV EP+P+
Sbjct: 294 FPELGMNATHCKEMTWIESVPYIPMGP-KGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKS 352
Query: 363 AFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSE 422
+E IF + G +++ PYGG ++ +PESA PFP R+G ++ + VVYW+ EG+
Sbjct: 353 DWEKIFTWLVKP--GAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGA- 409
Query: 423 TAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTS-YKQASIWGRKYFR 481
A W R ++ F+TP+VSKNPR +Y+NYRD+D+G N++ G S Y +WG KYF+
Sbjct: 410 -AALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFK 468
Query: 482 NNFDRLVVVKTMVDPHNFFRNEQSIPSL 509
NF+RL K +DP ++FRNEQSIP L
Sbjct: 469 GNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/510 (40%), Positives = 307/510 (60%), Gaps = 24/510 (4%)
Query: 4 AQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPL 63
A+E+FL CL++ +++Y +++ +Y S+L TI+N R+ + KP I+ P
Sbjct: 7 AKEDFLGCLVKEIP------PRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPT 60
Query: 64 QVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVP--YVVIDLINLRSISIDVEKTT 121
QVSHIQS + C + H +++RVRSGGHDYEGLSY S P + V+DL +R++ +D + T
Sbjct: 61 QVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKART 120
Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXX 181
AW+ +GA +GELY+ I S TL FPAGVCP++ +LLRKYG
Sbjct: 121 AWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVID 180
Query: 182 XXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKR 241
G+L D+KSMG+D FWA+RGGGG SFG++VAW+V+L+ +P TVT+ +++
Sbjct: 181 VKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSE 240
Query: 242 NLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQK 301
++++WQ VA + DL+ + A+FE+++LG + PLM
Sbjct: 241 GAVDIINKWQVVAPQLPADLMIRIIAQGPK----------ATFEAMYLGTCKTLTPLMSS 290
Query: 302 SFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPE 361
FPELG+ C E SW++++ +A D LLNR K F + KSDYV +P P+
Sbjct: 291 KFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPK 350
Query: 362 IAFEGIFELFNEKEGGNAEIMLV-PYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEG 420
+E I + K G A IM+ PYG +S PESA PFPHR G ++ + V YW+ G
Sbjct: 351 TVWEQILNTWLVKPG--AGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPG 408
Query: 421 SETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANK-IRGYTSYKQASIWGRKY 479
+ A ++W + +++++ P+VSKNPR +Y NYRDID+G N+ + ++Y +WG+KY
Sbjct: 409 AAAAP--LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKY 466
Query: 480 FRNNFDRLVVVKTMVDPHNFFRNEQSIPSL 509
F+ NF+RL + K VDP ++FRNEQSIP L
Sbjct: 467 FKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 327 bits (839), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 183/517 (35%), Positives = 282/517 (54%), Gaps = 21/517 (4%)
Query: 2 ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
A+A + L CL N + T V ++S ++ L +IQN F + KP I+
Sbjct: 21 AEAGNDLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIIL 76
Query: 62 PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
P + + I C + +R+RSGGH YEGLSY S P+++IDL+NL +SID+E T
Sbjct: 77 PGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESET 136
Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXX 181
AW+++G+T+GELY+ I ++S LGF AG CP+V ++ RKYG
Sbjct: 137 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 196
Query: 182 XXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKR 241
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++
Sbjct: 197 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 256
Query: 242 N-LTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQ 300
+ T L+H+WQFVA++ +ED V + V + G
Sbjct: 257 DEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFD 310
Query: 301 KSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPM 359
FPELGLVE++ E SW + + A + L+ NR +R +K K D +EP+
Sbjct: 311 LLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPL 367
Query: 360 PEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEE 419
P AF G+ E +++ N I L +GG+MS+I PFPHR+G + +V W +
Sbjct: 368 PSKAFYGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQS 425
Query: 420 GSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIW 475
+ ++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + W
Sbjct: 426 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 485
Query: 476 GRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSW 512
G YF +N++RL+ KT++DP+N F + QSIP ++++
Sbjct: 486 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANF 522
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 327 bits (839), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 183/517 (35%), Positives = 282/517 (54%), Gaps = 21/517 (4%)
Query: 2 ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
A+A + L CL N + T V ++S ++ L +IQN F + KP I+
Sbjct: 2 AEAGNDLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIIL 57
Query: 62 PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
P + + I C + +R+RSGGH YEGLSY S P+++IDL+NL +SID+E T
Sbjct: 58 PGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESET 117
Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXX 181
AW+++G+T+GELY+ I ++S LGF AG CP+V ++ RKYG
Sbjct: 118 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVD 177
Query: 182 XXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKR 241
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++
Sbjct: 178 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 237
Query: 242 N-LTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQ 300
+ T L+H+WQFVA++ +ED V + V + G
Sbjct: 238 DEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFD 291
Query: 301 KSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPM 359
FPELGLVE++ E SW + + A + L+ NR +R +K K D +EP+
Sbjct: 292 LLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPL 348
Query: 360 PEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEE 419
P AF G+ E +++ N I L +GG+MS+I PFPHR+G + +V W +
Sbjct: 349 PSKAFYGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQS 406
Query: 420 GSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIW 475
+ ++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + W
Sbjct: 407 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 466
Query: 476 GRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSW 512
G YF +N++RL+ KT++DP+N F + QSIP ++++
Sbjct: 467 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANF 503
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 327 bits (839), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 183/517 (35%), Positives = 282/517 (54%), Gaps = 21/517 (4%)
Query: 2 ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
A+A + L CL N + T V ++S ++ L +IQN F + KP I+
Sbjct: 2 AEAGNDLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIIL 57
Query: 62 PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
P + + I C + +R+RSGGH YEGLSY S P+++IDL+NL +SID+E T
Sbjct: 58 PGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESET 117
Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXX 181
AW+++G+T+GELY+ I ++S LGF AG CP+V ++ RKYG
Sbjct: 118 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 177
Query: 182 XXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKR 241
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++
Sbjct: 178 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 237
Query: 242 N-LTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQ 300
+ T L+H+WQFVA++ +ED V + V + G
Sbjct: 238 DEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFD 291
Query: 301 KSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPM 359
FPELGLVE++ E SW + + A + L+ NR +R +K K D +EP+
Sbjct: 292 LLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPL 348
Query: 360 PEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEE 419
P AF G+ E +++ N I L +GG+MS+I PFPHR+G + +V W +
Sbjct: 349 PSKAFYGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQS 406
Query: 420 GSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIW 475
+ ++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + W
Sbjct: 407 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 466
Query: 476 GRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSW 512
G YF +N++RL+ KT++DP+N F + QSIP ++++
Sbjct: 467 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANF 503
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 323 bits (829), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/510 (35%), Positives = 277/510 (54%), Gaps = 21/510 (4%)
Query: 7 NFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVS 66
+ L CL N + T V ++S ++ L +IQN F + KP I+ P
Sbjct: 1 DLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKE 56
Query: 67 HIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQA 126
+ + I C + +R+RSGGH YEGLSY S P+++IDL+NL +SID+E TAW+++
Sbjct: 57 ELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 127 GATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXXXXXXX 186
G+T+GELY+ I ++S LGF AG CP+V ++ RKYG
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 187 XKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRN-LTR 245
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++ + T
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 246 LVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPE 305
L+H+WQFVA++ +ED V + V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 306 LGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPMPEIAF 364
LGLVE++ E SW + + A + L+ NR +R +K K D +EP+P AF
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKAF 347
Query: 365 EGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETA 424
G+ E +++ N I L +GG+MS+I PFPHR+G + +V W + +
Sbjct: 348 YGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 425 ERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIWGRKYF 480
++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 481 RNNFDRLVVVKTMVDPHNFFRNEQSIPSLS 510
+N++RL+ KT++DP+N F + QSIP ++
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 321 bits (823), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 181/513 (35%), Positives = 277/513 (53%), Gaps = 21/513 (4%)
Query: 4 AQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPL 63
A + L CL N + T V ++S ++ L +IQN F + KP I+ P
Sbjct: 1 AGNDLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 56
Query: 64 QVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAW 123
+ + I C + +R+RSGG YEGLSY S P+++IDL+NL +SID+E TAW
Sbjct: 57 SKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAW 116
Query: 124 IQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXXXX 183
+++G+T+GELY+ I ++S LGF AG CP+V ++ RKYG
Sbjct: 117 VESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAI 176
Query: 184 XXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRN- 242
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++ +
Sbjct: 177 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE 236
Query: 243 LTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKS 302
T L+H+WQFVA++ +ED V + V + G
Sbjct: 237 ATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLL 290
Query: 303 FPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPMPE 361
FPELGLVE++ E SW + + A + L+ NR +R +K K D +EP+P
Sbjct: 291 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPS 347
Query: 362 IAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGS 421
AF G+ E +++ N I L +GG+MS+I PFPHR+G + +V W +
Sbjct: 348 KAFYGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQ 405
Query: 422 ETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIWGR 477
+ ++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + WG
Sbjct: 406 KKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGE 465
Query: 478 KYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLS 510
YF +N++RL+ KT++DP+N F + QSIP ++
Sbjct: 466 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 498
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 320 bits (821), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 180/511 (35%), Positives = 277/511 (54%), Gaps = 21/511 (4%)
Query: 7 NFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVS 66
+ L CL N + T V ++S ++ L +IQN F + KP I+ P
Sbjct: 1 DLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKE 56
Query: 67 HIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQA 126
+ + I C + +R+RSGGH YEGLSY S P+++IDL+NL +SID+E TAW+++
Sbjct: 57 ELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 127 GATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXXXXXXX 186
G+T+GELY+ I ++S LGF AG P+V ++ RKYG
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 187 XKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRN-LTR 245
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++ + T
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 246 LVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPE 305
L+H+WQFVA++ +ED V + V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 306 LGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPMPEIAF 364
LGLVE++ E SW + + A + L+ NR +R +K K D +EP+P AF
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKAF 347
Query: 365 EGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETA 424
G+ E +++ N I L +GG+MS+I PFPHR+G + +V W + +
Sbjct: 348 YGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 425 ERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIWGRKYF 480
++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 481 RNNFDRLVVVKTMVDPHNFFRNEQSIPSLSS 511
+N++RL+ KT++DP+N F + QSIP +++
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/510 (35%), Positives = 276/510 (54%), Gaps = 21/510 (4%)
Query: 7 NFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVS 66
+ L CL N + T V ++S ++ L +IQN F + KP I+ P
Sbjct: 1 DLLSCLTFNGVRNHT----VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKE 56
Query: 67 HIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQA 126
+ + I C + +R+RSGGH YEGLSY S P+++IDL+NL +SID+E TAW+++
Sbjct: 57 ELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 127 GATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXXXXXXX 186
G+T+GELY+ I ++S LGF AG P+V ++ RKYG
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 187 XKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRN-LTR 245
G +LDR++MGED+FWAIRGGGG +G I AWK++L+ +P VTV +++ + T
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 246 LVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPE 305
L+H+WQFVA++ +ED V + V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 306 LGLVEKECTETSWVRAVLHHARFPIEASLDVLLNR-SPVTKRFYKAKSDYVREPMPEIAF 364
LGLVE++ E SW + + A + L+ NR +R +K K D +EP+P AF
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKAF 347
Query: 365 EGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETA 424
G+ E +++ N I L +GG+MS+I PFPHR+G + +V W + +
Sbjct: 348 YGLLERLSKEP--NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 425 ERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG----ANKIRGYTSYKQASIWGRKYF 480
++W+ K++ F+ PFVSKNPR Y+N+ D+D+G NK + + + WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 481 RNNFDRLVVVKTMVDPHNFFRNEQSIPSLS 510
+N++RL+ KT++DP+N F + QSIP ++
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 69/492 (14%)
Query: 55 KPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSIS 114
+P V+ + + + G ++ VRSGGH +EG V VID+ +R +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAV-RAVIDMSQMRQVF 113
Query: 115 IDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGX 174
D K ++ GAT+GE Y + G + PAGVCP V L R+ G
Sbjct: 114 YDSGKRAFAVEPGATLGETYRALYLDWG-VTIPAGVCPQVGVGGHVLGGGYGPLSRRDGV 172
Query: 175 XX----XXXXXXXXXXXKGRLLDRKSMGED----LFWAIRGGGGASFGVIVAWKVELVTI 226
+ R + S +D L+WA GGGG +FG++ +
Sbjct: 173 VADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRY---WFRT 229
Query: 227 PSTVTVCSSRRSLKRNLTRLVH--RWQFVADKFDEDLITGVFLS--SVNASTGGNRTVIA 282
P S+ K + L H W + A E+ T + + + + S T A
Sbjct: 230 PGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAAGTPYA 287
Query: 283 SFESVFL----------------GGVDGVIPLMQK---SFPELGLVEKECTETS--WVRA 321
S SVF GG+DG L+ + E VE ++ W+RA
Sbjct: 288 SMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLRA 347
Query: 322 VLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEI 381
L + +F +R+ K+K Y+R+P ++ + E+
Sbjct: 348 TLAN-KFDTGG-----FDRT-------KSKGAYLRKPWTAAQAATLYRHLSADSQVWGEV 394
Query: 382 MLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHS--FLT 439
L YGGK++ +PE+A R +I K+ W + + A ++ WIR+++ F T
Sbjct: 395 SLYSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDA--NLAWIREIYREIFAT 451
Query: 440 ----PFVSKNPRASYINYRDIDIGANKIRGYTSYKQASI-WGRKYFRNNFDRLVVVKTMV 494
P ++INY D+D+ + + + + W Y++ N+ RL VK
Sbjct: 452 TGGVPVPDDRTEGTFINYPDVDLVDER------WNTSGVPWYTLYYKGNYPRLQKVKARW 505
Query: 495 DPHNFFRNEQSI 506
DP + FR+ S+
Sbjct: 506 DPRDVFRHALSV 517
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/466 (21%), Positives = 181/466 (38%), Gaps = 48/466 (10%)
Query: 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINL-RSIS 114
P I + +HIQS + C++ ++V +SGGH Y + ++++ L + IS
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 115 IDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGX 174
+ + A ++ GA +G L + D G G CP V +G
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMHGL 155
Query: 175 XXXXXXXXXXXXXKGRLLDRKSM-GEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVC 233
GR+++ + DLFW I+ G G++FG++ WK+ P +T
Sbjct: 156 AVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLTRF 214
Query: 234 SSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVD 293
+ K N T + + V ED V VN G E ++ G +
Sbjct: 215 GVTLNWK-NKTSALKGIEAV-----EDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPE 268
Query: 294 GVIPLMQKSFPEL--GLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKA- 350
Q L G V T +W+ +VL ++ F +D + PV + K+
Sbjct: 269 QWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFD---HVD-FITPQPVENFYAKSL 324
Query: 351 -----KSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPE---SAIPFPH 402
K D V+ + + F++ N+ + L +GGK S++ + + +PH
Sbjct: 325 TLKSIKGDAVKNFV-----DYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPH 379
Query: 403 RAGNIYKMSPVVYW--YEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGA 460
R K+ + ++ Y+ E ++ + +T + K+ YINY D +
Sbjct: 380 RD----KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMD- 434
Query: 461 NKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSI 506
R Y + + Y+ N RL +K DP + F Q++
Sbjct: 435 ---RDYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 110/462 (23%), Positives = 185/462 (40%), Gaps = 55/462 (11%)
Query: 79 GMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIA 138
G +V VRSGGH +E V V+ID+ L I+ D I+ G T+ E+Y K+
Sbjct: 81 GKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYEKLY 139
Query: 139 DTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXX----XXXXXXXXXXXKGRLL-- 192
+ P GVC V L R++G K R++
Sbjct: 140 -LGWNVTIPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVIVA 198
Query: 193 --DRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRW 250
+R DL+WA GGGG +FGV+ + + +P V R K T L
Sbjct: 199 TRERDDPHHDLWWAHTGGGGGNFGVVTKY---WMRVPEDVGRNPERLLPKPPATLLTSTV 255
Query: 251 QFVADKFDEDLITGVFLSS---VNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELG 307
F E + + + ++G + + + +G +P M +S +
Sbjct: 256 TFDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNE---VPGMGESG-FMM 311
Query: 308 LVEKECTETSWVRAVLHHARFPIEASLDVLLNRS---PVTKRFY-------------KAK 351
++ + T R + H IEA +D + P+ +R+ K K
Sbjct: 312 PIQVDATRPDARRLLDAH----IEAVIDGVPPAEVPEPIEQRWLASTPGRGGRGPASKTK 367
Query: 352 SDYVREPMPEIAFEGIFELFNEKEGGN-AEIMLVPYGGKMSEIPESAIPFPHRAGNIYKM 410
+ Y+R+ + + + ++E +G + + L+ YGGK++ + +A P R I K+
Sbjct: 368 AGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKV 426
Query: 411 SPVVYWYEEGSETAERHINWIRKLHSFL------TPFVSKNPRASYINYRDIDIGANKIR 464
+ + W G+E +H+ W+RKL++ + P + +YINY D D+ +
Sbjct: 427 NYITGWANPGNEA--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLN 484
Query: 465 GYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSI 506
W Y++ N RL VK DP N F + SI
Sbjct: 485 -----TSGVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSI 521
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 24/250 (9%)
Query: 25 KVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRV 84
+VIY ++S + +I + I + R L +P +I + L + + + +G+++ V
Sbjct: 15 EVIY-PDDSGFDAIAN--IWDGRHLQ----RPSLIARCLSAGDVAKSVRYACDNGLEISV 67
Query: 85 RSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTL 144
RSGGH+ G Y ++ +V+DL + SI ID + A I G G+L + A L
Sbjct: 68 RSGGHNPNG--YATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFG--L 123
Query: 145 GFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXXXXXXXXKGRLL----DRKSMGED 200
G+ P V L KYG G ++ D + +
Sbjct: 124 AAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERP---E 180
Query: 201 LFWAIRGGGGASFGVIVAWKVELVTIPST-----VTVCSSRRSLKRNLTRLVHRWQFVAD 255
LFWA+R G G +FGV+ +V+L +P +T S L LT L+ +AD
Sbjct: 181 LFWAVR-GAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMAD 239
Query: 256 KFDEDLITGV 265
+ GV
Sbjct: 240 HIYPSVFVGV 249
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 120/508 (23%), Positives = 192/508 (37%), Gaps = 67/508 (13%)
Query: 34 SYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGH---D 90
S+S F ++ F ATP +V LQ + + G V RSGGH D
Sbjct: 24 SHSDNHRFVVEPEEFFLPATPDD--VVASLQKAVTE---------GRGVACRSGGHCGQD 72
Query: 91 YEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGV 150
+ G +V+DL NL +I + + +GAT+ ++ K P G
Sbjct: 73 FVGTPRRD----LVLDLHNLHAIGPAADGAGVRVGSGATVDQV-QKALFRRWNAALPLGA 127
Query: 151 CPSVXXXXXXXXXXXXILLRKYGXXXXXXXXXXXXXXK---------GRLLDRKSMGEDL 201
C +V L R+ G R D +GE L
Sbjct: 128 CSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-L 186
Query: 202 FWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDL 261
FWA GGGG +FGV+ A++ +T V R + + ++ ++V W + + +
Sbjct: 187 FWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFVTV 246
Query: 262 ITGVFLSSVNASTGGNRTVIASFESVFLGGV-DGVIPLMQKS----FPELGLVEK---EC 313
+ F S G+ + F + F+ V GV+ LM + PE ++ +
Sbjct: 247 MRRFFEWHERHSEPGSPES-SLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASL 305
Query: 314 TETSWVRAV--------LHHARFPIEASL-DVLLNRSPVTKRFYKAKSDYVREPMPEIAF 364
TE + V + L R+ +A DV+ RS +++A P E
Sbjct: 306 TEGTGVVGIPRGGVMSWLTGTRYMSQADCGDVMGARSASKSAYHRAA------PTDEQLS 359
Query: 365 EGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETA 424
L + G + +M YGG+++ S P R ++ K S W + +E
Sbjct: 360 VLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQD--AELD 416
Query: 425 ERHINWIRKLHS------FLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRK 478
E H+ W+R L+ P YINY D D+ + R + W
Sbjct: 417 ELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-LDPARN----RSGEPWHHL 471
Query: 479 YFRNNFDRLVVVKTMVDPHNFFRNEQSI 506
Y+++N+ RL K DP N F + SI
Sbjct: 472 YYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 323 LHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAE-- 380
LH R+P A + R+ K K+ Y R + ++ + N
Sbjct: 349 LHSTRWPGIAGDGDMTGRA-------KIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGV 401
Query: 381 IMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFL-- 438
+ L+ YGGK++ +P R +I K+ V W + + H+ WIR+L+ +
Sbjct: 402 VALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV--HVRWIRELYRDVYA 458
Query: 439 ----TPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMV 494
P +Y+NY D+D+ + W Y+++ + RL VK
Sbjct: 459 DTGGVPVPGGAADGAYVNYPDVDLADEEWN-----TSGVPWSELYYKDAYPRLQAVKARW 513
Query: 495 DPHNFFRNEQSI 506
DP N FR+ S+
Sbjct: 514 DPRNVFRHALSV 525
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 44 QNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYV 103
+N RF+ P+ I + I+ V+ + G +V VRSGGH YE S V V
Sbjct: 51 ENLRFVG----DPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RV 105
Query: 104 VIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSV 154
V+D+ L ++ D E+ ++AGAT+G +Y + G + P G CP V
Sbjct: 106 VMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWG-VTLPGGACPDV 155
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 93/474 (19%), Positives = 176/474 (37%), Gaps = 55/474 (11%)
Query: 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISI 115
P I P I + + C G+Q+ + GGH Y + +++++L + +S+
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 116 DVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXX 175
D + A IQ GA +G ++ D G G CP+V +G
Sbjct: 103 D-DNNVATIQGGARLGYTALELLD-QGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 176 XXXXXXXXXXXXKGRLLD-RKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCS 234
++ ++ DLFWA+RGGGG F ++ ++ P +T
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 235 SRRSLKRNLTRLVHRWQFVAD-KFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVD 293
+T +R Q VA K +D ++ N + ++E F G
Sbjct: 220 --------VTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANAL-NWEGNFFGNAK 270
Query: 294 GVIPLMQKSFPELGLVE--KECTETSW---VRAVLHHARFPIEASLDVLLNRSPVTKRFY 348
+ ++Q + G + ET W + L+ A I + DV ++
Sbjct: 271 DLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDV--------HEYF 322
Query: 349 KAKSDYVREPMPEIAFEGI-------FELFNEKEGGNAEIMLVPYGGK---MSEIPESAI 398
A S P ++ E I F+ + + G I +GGK ++ +
Sbjct: 323 YANS----LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDET 378
Query: 399 PFPHRAGN-IYKMSPVVYWYEEG-SETAERHINWIRKLHSFLTPFVSKNPRASYINYRDI 456
+ HR +++ +Y YE S E +++ + + + ++ + Y NY D
Sbjct: 379 AYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADT 438
Query: 457 DIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLS 510
+ + + + Y+R N ++L +K DP + F N S+ ++
Sbjct: 439 TLTKEEAQ------------KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIA 480
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/474 (19%), Positives = 175/474 (36%), Gaps = 55/474 (11%)
Query: 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISI 115
P I P I + + C G+Q+ + GGH Y + +++++L + +S+
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 116 DVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXX 175
D + A IQ GA +G ++ D G G P+V +G
Sbjct: 103 D-DNNVATIQGGARLGYTALELLD-QGNRALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 176 XXXXXXXXXXXXKGRLLD-RKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCS 234
++ ++ DLFWA+RGGGG F ++ ++ P +T
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 235 SRRSLKRNLTRLVHRWQFVAD-KFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVD 293
+T +R Q VA K +D ++ N + ++E F G
Sbjct: 220 --------VTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANAL-NWEGNFFGNAK 270
Query: 294 GVIPLMQKSFPELGLVE--KECTETSW---VRAVLHHARFPIEASLDVLLNRSPVTKRFY 348
+ ++Q + G + ET W + L+ A I + DV ++
Sbjct: 271 DLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDV--------HEYF 322
Query: 349 KAKSDYVREPMPEIAFEGI-------FELFNEKEGGNAEIMLVPYGGK---MSEIPESAI 398
A S P ++ E I F+ + + G I +GGK ++ +
Sbjct: 323 YANS----LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDET 378
Query: 399 PFPHRAGN-IYKMSPVVYWYEEG-SETAERHINWIRKLHSFLTPFVSKNPRASYINYRDI 456
+ HR +++ +Y YE S E +++ + + + ++ + Y NY D
Sbjct: 379 AYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADT 438
Query: 457 DIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLS 510
+ + + + Y+R N ++L +K DP + F N S+ ++
Sbjct: 439 TLTKEEAQ------------KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIA 480
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPY----VVIDL 107
A P V V +Q V+ H + + S G ++ Y S P V++DL
Sbjct: 53 AAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDL 109
Query: 108 INL-RSISIDVEKTTAWIQAGATIGELYHKIADTS 141
+ + I ID E A ++ G T G++Y I + +
Sbjct: 110 KKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPY----VVIDL 107
A P V V +Q V+ H + + S G ++ Y S P V++DL
Sbjct: 54 AAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDL 110
Query: 108 INL-RSISIDVEKTTAWIQAGATIGELYHKIADTS 141
+ + I ID E A ++ G T G++Y I + +
Sbjct: 111 KKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|2WVC|A Chain A, Structural And Mechanistic Insights Into Helicobacter
Pylori Nikr Function
pdb|2WVC|B Chain B, Structural And Mechanistic Insights Into Helicobacter
Pylori Nikr Function
pdb|2WVF|A Chain A, Structural And Mechanistic Insights Into Helicobacter
Pylori Nikr Function
pdb|2WVF|B Chain B, Structural And Mechanistic Insights Into Helicobacter
Pylori Nikr Function
Length = 148
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 334 LDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEI 393
LD L NR + K Y ++S+ VR+ + E E + N + +++V Y G E+
Sbjct: 22 LDELDNR--IIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDGGQREL 79
Query: 394 PESAIPFPHRAG 405
+ I H +G
Sbjct: 80 NQRMIDIQHASG 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,155,789
Number of Sequences: 62578
Number of extensions: 614345
Number of successful extensions: 1217
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 27
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)