Query 042207
Match_columns 518
No_of_seqs 225 out of 2211
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 8.2E-39 1.8E-43 335.4 42.6 209 31-250 46-265 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 7.6E-34 1.6E-38 296.1 36.1 197 47-255 6-205 (438)
3 TIGR01679 bact_FAD_ox FAD-link 100.0 1.7E-32 3.8E-37 285.7 35.5 175 47-230 3-179 (419)
4 PLN02805 D-lactate dehydrogena 100.0 1.8E-33 4E-38 299.6 24.2 193 54-250 132-331 (555)
5 COG0277 GlcD FAD/FMN-containin 100.0 7.1E-33 1.5E-37 294.7 28.5 187 52-241 28-221 (459)
6 TIGR01676 GLDHase galactonolac 100.0 4.8E-33 1.1E-37 291.5 23.0 178 47-230 53-232 (541)
7 PRK11230 glycolate oxidase sub 100.0 1E-32 2.2E-37 292.5 23.4 198 51-250 51-254 (499)
8 TIGR01677 pln_FAD_oxido plant- 100.0 2.7E-31 5.8E-36 282.4 23.0 180 47-229 23-214 (557)
9 TIGR00387 glcD glycolate oxida 100.0 7.7E-31 1.7E-35 273.8 20.2 190 59-250 1-197 (413)
10 PRK11282 glcE glycolate oxidas 100.0 2E-30 4.4E-35 261.2 20.2 170 64-238 3-181 (352)
11 KOG1231 Proteins containing th 100.0 3.8E-30 8.2E-35 254.3 20.6 178 48-228 56-240 (505)
12 PLN02465 L-galactono-1,4-lacto 100.0 3.3E-29 7.2E-34 264.8 23.5 178 47-230 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 2.3E-27 5E-32 210.7 14.2 136 56-193 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 4.4E-25 9.5E-30 220.0 15.9 164 52-227 27-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 1.2E-24 2.7E-29 224.7 19.2 196 53-252 36-291 (564)
16 KOG4730 D-arabinono-1, 4-lacto 99.9 7.5E-23 1.6E-27 202.8 18.0 184 48-236 42-227 (518)
17 KOG1232 Proteins containing th 99.9 2.4E-23 5.2E-28 201.2 11.8 187 44-232 78-271 (511)
18 KOG1233 Alkyl-dihydroxyacetone 99.9 1.2E-22 2.6E-27 196.7 15.1 196 48-248 153-361 (613)
19 TIGR00179 murB UDP-N-acetyleno 99.9 2.6E-22 5.7E-27 198.1 13.2 162 52-225 9-174 (284)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 2.8E-22 6E-27 199.5 13.1 162 52-226 33-197 (305)
21 PRK14652 UDP-N-acetylenolpyruv 99.9 5.4E-22 1.2E-26 197.0 13.9 163 52-227 32-196 (302)
22 PRK13906 murB UDP-N-acetylenol 99.9 8E-22 1.7E-26 196.2 13.4 160 53-225 34-196 (307)
23 PRK13903 murB UDP-N-acetylenol 99.9 5.4E-21 1.2E-25 193.0 15.2 165 52-227 29-197 (363)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 7.1E-20 1.5E-24 181.4 16.7 165 52-227 17-193 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 3E-18 6.6E-23 169.1 13.3 161 52-227 30-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 2.9E-17 6.3E-22 158.8 13.8 165 51-226 16-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 6.5E-17 1.4E-21 159.1 12.5 163 52-227 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 6.7E-17 1.5E-21 161.4 11.5 162 52-226 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 4.7E-16 1E-20 155.0 13.0 166 52-227 26-237 (354)
30 PF08031 BBE: Berberine and be 99.7 7.7E-17 1.7E-21 113.7 3.7 47 449-507 1-47 (47)
31 KOG1262 FAD-binding protein DI 99.6 2.9E-16 6.4E-21 152.9 7.6 198 27-231 30-233 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.5 7.1E-14 1.5E-18 135.7 14.0 148 55-226 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.3 1.6E-11 3.6E-16 118.1 9.6 144 53-227 16-160 (257)
34 PF00941 FAD_binding_5: FAD bi 96.4 0.0026 5.7E-08 58.3 3.2 77 56-136 2-80 (171)
35 TIGR03312 Se_sel_red_FAD proba 95.5 0.061 1.3E-06 52.6 8.5 98 59-163 4-109 (257)
36 PRK09799 putative oxidoreducta 94.9 0.088 1.9E-06 51.6 7.6 140 58-222 4-155 (258)
37 PRK09971 xanthine dehydrogenas 94.5 0.079 1.7E-06 52.9 6.3 74 58-135 6-82 (291)
38 TIGR02963 xanthine_xdhA xanthi 92.9 0.3 6.5E-06 52.1 7.6 104 56-163 192-303 (467)
39 TIGR03195 4hydrxCoA_B 4-hydrox 90.7 0.54 1.2E-05 47.4 6.2 75 57-135 5-81 (321)
40 PF09265 Cytokin-bind: Cytokin 89.8 0.17 3.7E-06 49.7 1.7 33 474-507 249-281 (281)
41 TIGR03199 pucC xanthine dehydr 89.4 0.55 1.2E-05 46.1 5.0 70 62-135 1-73 (264)
42 PF04030 ALO: D-arabinono-1,4- 85.6 1.1 2.3E-05 43.9 4.5 22 482-503 233-254 (259)
43 PLN02906 xanthine dehydrogenas 84.0 2.1 4.5E-05 51.7 6.7 80 56-139 228-309 (1319)
44 PLN00192 aldehyde oxidase 82.3 3.2 7E-05 50.2 7.4 83 56-139 233-316 (1344)
45 PF02913 FAD-oxidase_C: FAD li 81.9 2 4.4E-05 41.0 4.7 27 475-501 217-244 (248)
46 TIGR02969 mam_aldehyde_ox alde 81.7 3.8 8.2E-05 49.6 7.7 78 57-138 237-316 (1330)
47 PLN00107 FAD-dependent oxidore 80.6 2.6 5.6E-05 40.8 4.7 22 482-503 176-197 (257)
48 COG1319 CoxM Aerobic-type carb 76.0 9 0.0002 37.9 7.1 75 56-134 3-80 (284)
49 COG0351 ThiD Hydroxymethylpyri 74.7 11 0.00024 36.8 7.2 103 3-141 120-225 (263)
50 COG4630 XdhA Xanthine dehydrog 68.3 11 0.00024 38.4 5.6 141 56-206 203-352 (493)
51 COG4981 Enoyl reductase domain 65.6 11 0.00024 40.1 5.3 62 18-84 119-181 (717)
52 TIGR01677 pln_FAD_oxido plant- 61.1 15 0.00032 40.2 5.6 22 482-503 482-503 (557)
53 PF03614 Flag1_repress: Repres 59.8 33 0.00071 30.2 6.3 37 60-96 10-47 (165)
54 PRK11230 glycolate oxidase sub 58.6 17 0.00037 39.2 5.5 32 475-506 440-472 (499)
55 TIGR00387 glcD glycolate oxida 57.2 7 0.00015 41.1 2.3 28 474-501 382-410 (413)
56 PLN02805 D-lactate dehydrogena 56.9 20 0.00043 39.3 5.7 34 474-507 516-550 (555)
57 KOG4730 D-arabinono-1, 4-lacto 52.4 7.9 0.00017 40.3 1.6 22 482-503 485-506 (518)
58 PF10740 DUF2529: Protein of u 49.1 25 0.00055 31.9 4.1 118 3-128 22-154 (172)
59 PF02601 Exonuc_VII_L: Exonucl 45.4 32 0.0007 34.6 4.8 58 25-89 18-87 (319)
60 PRK11282 glcE glycolate oxidas 43.2 16 0.00034 37.6 2.1 22 481-502 323-345 (352)
61 COG1519 KdtA 3-deoxy-D-manno-o 38.9 1.7E+02 0.0037 30.6 8.8 35 54-88 259-293 (419)
62 PF04472 DUF552: Protein of un 35.1 46 0.00099 25.5 3.1 33 58-112 2-34 (73)
63 TIGR00178 monomer_idh isocitra 34.8 3.6E+02 0.0078 29.6 10.4 134 65-206 312-460 (741)
64 COG4359 Uncharacterized conser 33.6 45 0.00098 30.7 3.2 25 69-93 79-103 (220)
65 PRK00286 xseA exodeoxyribonucl 33.2 50 0.0011 35.0 4.1 57 25-88 139-203 (438)
66 KOG3282 Uncharacterized conser 32.9 63 0.0014 29.6 4.0 42 47-90 118-160 (190)
67 COG1570 XseA Exonuclease VII, 30.4 62 0.0013 34.0 4.0 55 25-86 139-200 (440)
68 cd07033 TPP_PYR_DXS_TK_like Py 29.9 76 0.0016 28.2 4.2 30 57-86 125-154 (156)
69 PF02779 Transket_pyr: Transke 26.1 1E+02 0.0023 27.9 4.5 32 57-88 139-172 (178)
70 PRK04322 peptidyl-tRNA hydrola 26.1 1.3E+02 0.0028 25.3 4.6 42 47-90 41-83 (113)
71 cd02429 PTH2_like Peptidyl-tRN 24.6 1.4E+02 0.003 25.3 4.5 32 54-85 54-85 (116)
72 PF03392 OS-D: Insect pheromon 23.9 52 0.0011 26.8 1.8 14 488-501 79-92 (95)
73 KOG2499 Beta-N-acetylhexosamin 23.3 72 0.0016 33.8 3.0 28 64-91 248-277 (542)
74 cd06568 GH20_SpHex_like A subg 23.1 81 0.0018 32.0 3.4 28 63-90 72-101 (329)
75 PF15608 PELOTA_1: PELOTA RNA 22.8 1E+02 0.0023 25.3 3.3 34 55-88 55-89 (100)
76 cd02742 GH20_hexosaminidase Be 22.0 89 0.0019 31.3 3.4 29 62-90 68-98 (303)
77 PF01981 PTH2: Peptidyl-tRNA h 21.7 1.6E+02 0.0035 24.7 4.5 42 47-90 44-86 (116)
78 COG2838 Icd Monomeric isocitra 21.6 4.7E+02 0.01 28.0 8.4 136 65-206 314-462 (744)
79 cd02430 PTH2 Peptidyl-tRNA hyd 21.4 1.5E+02 0.0032 25.1 4.1 42 47-90 43-85 (115)
80 cd05014 SIS_Kpsf KpsF-like pro 20.6 1.7E+02 0.0036 24.5 4.4 34 58-91 53-86 (128)
81 TIGR00283 arch_pth2 peptidyl-t 20.6 1.9E+02 0.0041 24.4 4.6 42 47-90 43-85 (115)
82 cd06565 GH20_GcnA-like Glycosy 20.5 99 0.0021 30.9 3.4 29 62-90 56-86 (301)
83 TIGR01676 GLDHase galactonolac 20.2 67 0.0014 35.0 2.2 20 484-503 515-534 (541)
84 cd06570 GH20_chitobiase-like_1 20.1 1E+02 0.0023 31.0 3.4 28 63-90 65-94 (311)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=8.2e-39 Score=335.42 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=178.1
Q ss_pred CCCchhhHHhhcccccccccCCCCCCcEEEecCCHHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCcccCCCeEEEEcc
Q 042207 31 NNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQ--WHGMQVRVRSGGHDYEGLSYISHVPYVVIDLI 108 (518)
Q Consensus 31 ~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~ 108 (518)
++.++..+. ..|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+ |++|||+
T Consensus 46 d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms 117 (525)
T PLN02441 46 DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMR 117 (525)
T ss_pred CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECC
Confidence 344555553 3588888889999999999999999999997 67999999999999999888765 9999999
Q ss_pred CCcc-------eEEeCCCcEEEEeCCCcHHHHHHHHHhhCCCcee-cCCCCCCccchhhhcCCCCCCccccCCcccccee
Q 042207 109 NLRS-------ISIDVEKTTAWIQAGATIGELYHKIADTSGTLGF-PAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVV 180 (518)
Q Consensus 109 ~~~~-------i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~-~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~ 180 (518)
+||+ +++|.+..+|+|++|++|.+|++++.++| +++ ..+....++|||.+++||+|..+.+||..+|+|+
T Consensus 118 ~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl 195 (525)
T PLN02441 118 SLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL 195 (525)
T ss_pred CCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence 9999 47888999999999999999999999987 433 2355567899999999999999999999999999
Q ss_pred EEEEEeeCCeEEe-ccCCCchhHHHhhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHHHH
Q 042207 181 DAHLVDVKGRLLD-RKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRW 250 (518)
Q Consensus 181 ~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
+++||+++|++++ ++++|+|||||++|| +|+|||||++|||++|.|+....+.+.|..-..+.+-++++
T Consensus 196 ~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l 265 (525)
T PLN02441 196 ELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL 265 (525)
T ss_pred EEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence 9999999999999 888899999999998 68999999999999999997766666665433333333333
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=7.6e-34 Score=296.12 Aligned_cols=197 Identities=22% Similarity=0.340 Sum_probs=171.4
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEe
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQ 125 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~ 125 (518)
+|+.+....|.+|+.|+|++||+++|++|++++++|+++|+|||+.+..... +++|||++||+| ++|+++++|+|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~~---gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACTD---GFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccCC---eEEEEhhhcCCceEEcCCCCEEEEc
Confidence 4888888999999999999999999999999999999999999998765532 899999999996 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCceec-CCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHH
Q 042207 126 AGATIGELYHKIADTSGTLGFP-AGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFW 203 (518)
Q Consensus 126 ~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~ 203 (518)
||+++.+|.+.|.++|.. ++ .|.++.++|||++++|+||. +.+||+.+|+|+++++|++||++++ ++++++||||
T Consensus 83 aG~~l~~L~~~L~~~Gl~--l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~ 159 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYS--MSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQ 159 (438)
T ss_pred CCCCHHHHHHHHHHcCCE--ecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHH
Confidence 999999999999998854 44 68888999999999999996 6889999999999999999999998 7778999999
Q ss_pred HhhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHHHHHHhhh
Q 042207 204 AIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVAD 255 (518)
Q Consensus 204 a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (518)
+.+|| .|+|||||++|||++|........ .. ....++++.|++...
T Consensus 160 a~~~~-~G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 160 AARVS-LGCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHWK 205 (438)
T ss_pred HHhcC-CCceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHhh
Confidence 99998 589999999999999987644322 11 124456666766543
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.7e-32 Score=285.74 Aligned_cols=175 Identities=22% Similarity=0.340 Sum_probs=156.1
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEe
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQ 125 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~ 125 (518)
+|+......|.+|++|+|++||+++|+.|++ +++++|+|||+.+.+.. + +++|||++||+| ++|+++++|+||
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEc
Confidence 4888888999999999999999999999974 79999999999876543 3 799999999996 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHHH
Q 042207 126 AGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWA 204 (518)
Q Consensus 126 ~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a 204 (518)
||+++.+|.+.|.++|..+.. .|.+..++|||.+.+|+||.. ..||..+|+|++++||++||++++ ++.+++|||||
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 999999999999999865432 355566889999999999974 589999999999999999999999 77789999999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCee
Q 042207 205 IRGGGGASFGVIVAWKVELVTIPSTV 230 (518)
Q Consensus 205 ~rg~~~g~~Givt~~~~~l~~~~~~~ 230 (518)
+||| +|+|||||++|||++|.++..
T Consensus 155 ~~g~-~G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 155 ARVS-LGALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHhC-CCceEEEEEEEEEeecceEeE
Confidence 9999 589999999999999988643
No 4
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.8e-33 Score=299.57 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=170.0
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHH
Q 042207 54 PKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGE 132 (518)
Q Consensus 54 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~ 132 (518)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+.... ++++|||++||+| ++|+++++|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999998877542 4899999999997 7999999999999999999
Q ss_pred HHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe--cc----CCCchhHHHhh
Q 042207 133 LYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD--RK----SMGEDLFWAIR 206 (518)
Q Consensus 133 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~--~~----~~~~dl~~a~r 206 (518)
|+++|.++| +.++...++.++|||.++++++|..+.+||.++|+|++++||++||++++ +. ..++||+|+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999988 45666666778999999999999999999999999999999999999996 21 24689999999
Q ss_pred ccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHHHH
Q 042207 207 GGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRW 250 (518)
Q Consensus 207 g~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
|+ +|+|||||+++|||+|.|+......+.|+..+++.+++..+
T Consensus 289 Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 289 GS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred cC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 99 68999999999999999997777777777544455444443
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=7.1e-33 Score=294.65 Aligned_cols=187 Identities=26% Similarity=0.357 Sum_probs=165.3
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATI 130 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~ 130 (518)
....|.+|+.|+|++||+++|++|+++++||++||+|||+.|.+.+.+ +|+|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~--gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG--GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC--cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 446799999999999999999999999999999999999998887763 899999999998 79999999999999999
Q ss_pred HHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe--c----cCCCchhHHH
Q 042207 131 GELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD--R----KSMGEDLFWA 204 (518)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~--~----~~~~~dl~~a 204 (518)
.+|.++|.++|+.+.+.+++...++|||++++|++|.++.+||.++|+|+++++|++||++++ . ...+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999986655444554579999999999999999999999999999999999999997 2 2455899999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhh
Q 042207 205 IRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKR 241 (518)
Q Consensus 205 ~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~ 241 (518)
..|| .|+|||||++|||++|.|+........+...+
T Consensus 186 ~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~ 221 (459)
T COG0277 186 FVGS-EGTLGIITEATLKLLPLPETKATAVAGFPSIE 221 (459)
T ss_pred cccC-CccceEEEEEEEEeccCCchheEEEEeCCCHH
Confidence 9987 78999999999999999886665555554433
No 6
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=4.8e-33 Score=291.48 Aligned_cols=178 Identities=18% Similarity=0.257 Sum_probs=162.7
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEe
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQ 125 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~ 125 (518)
+|+++....|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|+++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 5999999999999999999999999999999999999999999999877765 457999999995 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHHH
Q 042207 126 AGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWA 204 (518)
Q Consensus 126 ~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a 204 (518)
||+++.+|.+.|.++|..+. ..|.+..++|||.+++|+||.. .+||..+|+|++++||+++|++++ +.++++|||||
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~A 207 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFL 207 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHH
Confidence 99999999999999884332 3488888999999999999985 479999999999999999999998 77789999999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCee
Q 042207 205 IRGGGGASFGVIVAWKVELVTIPSTV 230 (518)
Q Consensus 205 ~rg~~~g~~Givt~~~~~l~~~~~~~ 230 (518)
+||| .|+|||||++|||++|.+...
T Consensus 208 args-lG~LGVItevTLr~~Pa~~l~ 232 (541)
T TIGR01676 208 ARCG-LGGLGVVAEVTLQCVERQELV 232 (541)
T ss_pred HhcC-CCceEeEEEEEEEEEecccee
Confidence 9999 589999999999999998743
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1e-32 Score=292.49 Aligned_cols=198 Identities=19% Similarity=0.250 Sum_probs=170.3
Q ss_pred CCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCc
Q 042207 51 AATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGAT 129 (518)
Q Consensus 51 ~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~ 129 (518)
.....|.+|++|+|++||+++|++|+++++||++||+||++.|.+.+.. ++++|||++||+| ++|+++++|+||||++
T Consensus 51 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~ 129 (499)
T PRK11230 51 AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVR 129 (499)
T ss_pred ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCcc
Confidence 3456899999999999999999999999999999999999987766543 4899999999996 9999999999999999
Q ss_pred HHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-cc----CCCchhHHH
Q 042207 130 IGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RK----SMGEDLFWA 204 (518)
Q Consensus 130 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~----~~~~dl~~a 204 (518)
+.+|.++|.++|..+...+++....+|||++++++.|+.+.+||..+|+|++++||++||++++ .. ..++||+|+
T Consensus 130 ~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l 209 (499)
T PRK11230 130 NLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLAL 209 (499)
T ss_pred HHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhh
Confidence 9999999999986443334555567899999999999999999999999999999999999998 32 347899999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHHHH
Q 042207 205 IRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRW 250 (518)
Q Consensus 205 ~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
++|+ +|+|||||++|||++|.|+....+.+.|...+++.+++..+
T Consensus 210 ~~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 210 FTGS-EGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred hccC-CCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 9999 68999999999999999997777777776544444444433
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=2.7e-31 Score=282.37 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=159.6
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEe-CCCCCCCCCcccC-CCeEEEEccCCcc-eEEeCCCcEEE
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRS-GGHDYEGLSYISH-VPYVVIDLINLRS-ISIDVEKTTAW 123 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g-~Gh~~~g~~~~~~-~~~vvidl~~~~~-i~~d~~~~~v~ 123 (518)
+|+++....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+ +++++|||++||+ +++|.++++|+
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 5999999999999999999999999999999999999996 6999876554432 1369999999999 69999999999
Q ss_pred EeCCCcHHHHHHHHHhhCCCceecC-CCCCCccchhhhcCCCCCCcc-ccCCccccceeEEEEEeeCC------eEEe-c
Q 042207 124 IQAGATIGELYHKIADTSGTLGFPA-GVCPSVGVGGHFSGGGYGILL-RKYGLAADHVVDAHLVDVKG------RLLD-R 194 (518)
Q Consensus 124 v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~-~~~G~~~d~v~~~~vV~~~G------~i~~-~ 194 (518)
|+||+++.+|.+.|.++|+ .++. +....++|||.+.+|+||... +.||+.+|+|++++||+++| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 9999999999999999884 4444 455678999999999999766 58899999999999999998 7887 7
Q ss_pred cCCCchhHHHhhccCCCCeEEEEEEEEEEEecCCe
Q 042207 195 KSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPST 229 (518)
Q Consensus 195 ~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~ 229 (518)
..+++|||||+||| +|+|||||++|||++|.+..
T Consensus 181 ~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 181 EGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCCHHHHHhhccC-CCccEeeeEEEEEEEccccc
Confidence 77899999999999 58999999999999998764
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=7.7e-31 Score=273.76 Aligned_cols=190 Identities=20% Similarity=0.251 Sum_probs=163.3
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHHHHH
Q 042207 59 IVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELYHKI 137 (518)
Q Consensus 59 vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l 137 (518)
||+|+|++||+++|++|+++++|++++|+|||+.|.+.+.+ ++++|||++||+| ++|+++++++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 58899999999999999999999999999999987766553 4899999999997 999999999999999999999999
Q ss_pred HhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-c-----cCCCchhHHHhhccCCC
Q 042207 138 ADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-R-----KSMGEDLFWAIRGGGGA 211 (518)
Q Consensus 138 ~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~-----~~~~~dl~~a~rg~~~g 211 (518)
.++|..+.+.+++....+|||.+.+++.|..+.+||..+|+|++++||++||++++ . ...++||++.+.|+ +|
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs-~G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS-EG 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-Cc
Confidence 99885443334555567899999999999999999999999999999999999997 2 23468999999998 68
Q ss_pred CeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHHHH
Q 042207 212 SFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRW 250 (518)
Q Consensus 212 ~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
+|||||+++|||+|.|+....+.+.|...+++.+++..+
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999997666667776544454444443
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=261.21 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCC-CCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHHHHHHhhC
Q 042207 64 QVSHIQSVIFCSQWHGMQVRVRSGGHD-YEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELYHKIADTS 141 (518)
Q Consensus 64 ~~~dv~~~v~~a~~~~~~~~~~g~Gh~-~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g 141 (518)
.++||+++|++|+++++||+++||||+ +.|.+ .. +++|||++||+| ++|+++.+|+|+||+++.+|.+.|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 479999999999999999999999974 55653 23 679999999996 9999999999999999999999999998
Q ss_pred CCceecCC-CCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-c-----cCCCchhHHHhhccCCCCeE
Q 042207 142 GTLGFPAG-VCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-R-----KSMGEDLFWAIRGGGGASFG 214 (518)
Q Consensus 142 ~~l~~~~g-~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~-----~~~~~dl~~a~rg~~~g~~G 214 (518)
..+++.++ .+...+|||.+++|++|+.+.+||..+|+|+++++|++||++++ . ...++||||+++|| +|+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cchhh
Confidence 65555333 44468999999999999999999999999999999999999997 2 23578999999999 68999
Q ss_pred EEEEEEEEEEecCCeeEEEEEeec
Q 042207 215 VIVAWKVELVTIPSTVTVCSSRRS 238 (518)
Q Consensus 215 ivt~~~~~l~~~~~~~~~~~~~~~ 238 (518)
|||++|||++|.|+....+.+.++
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC
Confidence 999999999999987655555544
No 11
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=3.8e-30 Score=254.27 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=154.1
Q ss_pred cccCCCCCCcEEEecCCHHHHHHHHHHHHHc--CCeEEEEeCCCCCCCCCcccCCCeEEEEcc---CCcce-EEeCCCcE
Q 042207 48 FLTAATPKPQVIVKPLQVSHIQSVIFCSQWH--GMQVRVRSGGHDYEGLSYISHVPYVVIDLI---NLRSI-SIDVEKTT 121 (518)
Q Consensus 48 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~--~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~---~~~~i-~~d~~~~~ 121 (518)
|....+..|.+|+.|+|+|||++++|.|+.. ++||++||+|||..|++.... +|++|.|+ .|+++ .+..++..
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 4344567899999999999999999999999 999999999999999988743 48777664 45554 45666789
Q ss_pred EEEeCCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCch
Q 042207 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGED 200 (518)
Q Consensus 122 v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~d 200 (518)
|.|.||..|-+|.+++.++|..-.++.-..+ .+|||.++.+|+|..+.+||...+||++++||+++|++++ +...|++
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~ 213 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSN 213 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCce
Confidence 9999999999999999998842123333344 8899999999999999999999999999999999999999 7778999
Q ss_pred hHHHhhccCCCCeEEEEEEEEEEEecCC
Q 042207 201 LFWAIRGGGGASFGVIVAWKVELVTIPS 228 (518)
Q Consensus 201 l~~a~rg~~~g~~Givt~~~~~l~~~~~ 228 (518)
||.++.|| .|+|||||+++++|+|+|+
T Consensus 214 lf~~vlGg-lGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 214 LFFLVLGG-LGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeecc-CcceeeEEEEEEEeccCCc
Confidence 99999999 7899999999999999994
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=3.3e-29 Score=264.75 Aligned_cols=178 Identities=19% Similarity=0.263 Sum_probs=159.8
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEe
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQ 125 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~ 125 (518)
+|++...+.|.+++.|+|++||+++|++|+++++||+++|+|||+.+..... +.+|||++|++| ++|+++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 6999999999999999999999999999999999999999999998877655 356899999995 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHHH
Q 042207 126 AGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWA 204 (518)
Q Consensus 126 ~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a 204 (518)
||+++.+|.+.|.++|..+. ..|.....+|||.+.+|+||... .+|..+|+|++++||+++|++++ +.++++||||+
T Consensus 165 AG~~l~~L~~~L~~~GLal~-n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~a 242 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQ-NYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRL 242 (573)
T ss_pred cCCCHHHHHHHHHHcCCEec-cCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhH
Confidence 99999999999999885432 23566678999999999999754 68999999999999999999998 77778999999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCCee
Q 042207 205 IRGGGGASFGVIVAWKVELVTIPSTV 230 (518)
Q Consensus 205 ~rg~~~g~~Givt~~~~~l~~~~~~~ 230 (518)
.|+| .|.|||||++|||+.|.++..
T Consensus 243 ar~g-lG~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 243 ARCG-LGGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred hhcc-CCCCcEEEEEEEEEEecCceE
Confidence 9998 579999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=2.3e-27 Score=210.71 Aligned_cols=136 Identities=35% Similarity=0.545 Sum_probs=125.3
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcc-eEEeCCCcEEEEeCCCcHHHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRS-ISIDVEKTTAWIQAGATIGELY 134 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~-i~~d~~~~~v~v~~G~~~~~l~ 134 (518)
|.+|++|++++||+++|++|+++++|+.++|+||++.+.+...+ +++|||++|++ +++|++.++++|+||+++.+|+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~--~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEG--GIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTT--EEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCC--cEEEeeccccccccccccceeEEEeccccchhcc
Confidence 78999999999999999999999999999999999987776343 99999999999 7999999999999999999999
Q ss_pred HHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe
Q 042207 135 HKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD 193 (518)
Q Consensus 135 ~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~ 193 (518)
++|.++|..+.+.++.+..+++||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999885544457888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=4.4e-25 Score=220.01 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=141.8
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccC-CcceEEeCCCcEEEEeCCCcH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLIN-LRSISIDVEKTTAWIQAGATI 130 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~-~~~i~~d~~~~~v~v~~G~~~ 130 (518)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++ |+.|++ ++.+++|+||+.+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 346799999999999999999999999999999999999765444333 89999998 998855 4568999999999
Q ss_pred HHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCC-ccccceeEEEEEeeCCeEEeccCCCchhHHHhhccC
Q 042207 131 GELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYG-LAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGG 209 (518)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dl~~a~rg~~ 209 (518)
.+|.+++.++|+ .|.+..++|+| ++||+++++++.|| .++|+|+++++|++||++++. ...|++|++|++.
T Consensus 103 ~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~--~~~e~~~~yR~s~ 174 (298)
T PRK13905 103 IKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTL--SNEELGFGYRHSA 174 (298)
T ss_pred HHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEE--EHHHcCCcCcccc
Confidence 999999999883 47777788888 78899999999998 799999999999999999982 2359999999986
Q ss_pred CC-CeEEEEEEEEEEEecC
Q 042207 210 GA-SFGVIVAWKVELVTIP 227 (518)
Q Consensus 210 ~g-~~Givt~~~~~l~~~~ 227 (518)
++ .+||||+++||++|..
T Consensus 175 ~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 175 LQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 54 3899999999999874
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.93 E-value=1.2e-24 Score=224.67 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=161.2
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCC----CeEEEEccCCcce-EEeCCCcEEEEeCC
Q 042207 53 TPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHV----PYVVIDLINLRSI-SIDVEKTTAWIQAG 127 (518)
Q Consensus 53 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~----~~vvidl~~~~~i-~~d~~~~~v~v~~G 127 (518)
...|.+||+|+|++||+++|++|+++++||++||||+++.|.+.+.+. ++|||||++||+| +|| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988887642 3799999999997 788 5578999999
Q ss_pred CcHHHHHHHHHhhCCCceecCCCC-CCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeE-------Ee--c-c-
Q 042207 128 ATIGELYHKIADTSGTLGFPAGVC-PSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRL-------LD--R-K- 195 (518)
Q Consensus 128 ~~~~~l~~~l~~~g~~l~~~~g~~-~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i-------~~--~-~- 195 (518)
|++.+|.++|.++|+.+....|++ -..+|||.++.++.|....+||...++++. ++|+++|++ +. . .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 999999999999985432212332 234688999999999999999999999999 999999999 32 1 1
Q ss_pred -------CCCc----------------------------------hhHHHh--hccCCCCeEEEEEEEEEEEecCCeeEE
Q 042207 196 -------SMGE----------------------------------DLFWAI--RGGGGASFGVIVAWKVELVTIPSTVTV 232 (518)
Q Consensus 196 -------~~~~----------------------------------dl~~a~--rg~~~g~~Givt~~~~~l~~~~~~~~~ 232 (518)
..+. |+...+ .|+ .|++||| +++|+++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceE
Confidence 1122 777777 777 7899999 999999999998888
Q ss_pred EEEeechhhhHHHHHHHHHH
Q 042207 233 CSSRRSLKRNLTRLVHRWQF 252 (518)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (518)
|.+.++..+.+.++...+..
T Consensus 272 f~ig~n~~~~~~~~rr~il~ 291 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHILA 291 (564)
T ss_pred EEEeCCCHHHHHHHHHHHHH
Confidence 99988876666665555443
No 16
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.90 E-value=7.5e-23 Score=202.77 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=159.3
Q ss_pred cccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcc-eEEeCCCcEEEEeC
Q 042207 48 FLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRS-ISIDVEKTTAWIQA 126 (518)
Q Consensus 48 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~-i~~d~~~~~v~v~~ 126 (518)
|.....++.+-|-+|+|++||.++|+.|+++|+++++.|.|||..+..+.+ |.+|++..||+ +++|++.++|||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 444556677888899999999999999999999999999999999887766 68999999999 59999999999999
Q ss_pred CCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHHHh
Q 042207 127 GATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAI 205 (518)
Q Consensus 127 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~ 205 (518)
|+++.||.+++++.|..|. ..|+...++|||++..|+||.....|+......+-..++.++|.++. +++.+||+|.|.
T Consensus 119 GirlrQLie~~~~~GlsL~-~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AA 197 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGLSLP-NAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAA 197 (518)
T ss_pred CcCHHHHHHHHHhcCcccc-CCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhh
Confidence 9999999999999885442 34778889999999999999877767766666666777778999877 888899999999
Q ss_pred hccCCCCeEEEEEEEEEEEecCCeeEEEEEe
Q 042207 206 RGGGGASFGVIVAWKVELVTIPSTVTVCSSR 236 (518)
Q Consensus 206 rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~ 236 (518)
+-| .|.+|||.++||++.|..+...++.++
T Consensus 198 kvS-LG~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 198 KVS-LGVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhc-ccceeEEEEEEEEEEecceeeeEEEEe
Confidence 999 579999999999999998876655554
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=2.4e-23 Score=201.25 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=170.7
Q ss_pred cccccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEE
Q 042207 44 QNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTA 122 (518)
Q Consensus 44 ~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v 122 (518)
+|..|..........|++|.|+++|++++++|+++++.|++.||-++..|.|.+.- +-|||+|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 46679888888999999999999999999999999999999999999988888764 3899999999997 899999999
Q ss_pred EEeCCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe------ccC
Q 042207 123 WIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD------RKS 196 (518)
Q Consensus 123 ~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~------~~~ 196 (518)
++++||.+.++..+|++.|+.+++..|.-.++-|||.++.++-|..--+||..+-+|+++|+|+|+|+|+. ...
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999998777778999999999999999999999999999999999999999999986 345
Q ss_pred CCchhHHHhhccCCCCeEEEEEEEEEEEecCCeeEE
Q 042207 197 MGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTV 232 (518)
Q Consensus 197 ~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~ 232 (518)
++-||-..+.|+ +|++||||++++-+.|.|+.+..
T Consensus 237 TgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecC-CceeeEEeeEEEeecCCCcceeE
Confidence 678998888999 89999999999999999986543
No 18
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=196.67 Aligned_cols=196 Identities=22% Similarity=0.252 Sum_probs=168.3
Q ss_pred cccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcccCCC--eEEEEccCCcce-EEeCCCcEEE
Q 042207 48 FLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYISHVP--YVVIDLINLRSI-SIDVEKTTAW 123 (518)
Q Consensus 48 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~~~~~--~vvidl~~~~~i-~~d~~~~~v~ 123 (518)
|.....+.|..||.|++.+||.++|+.|.++|+-+.+.|||+|.+ +..++.... -+.+|++.||+| .+|.++.+++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 667788999999999999999999999999999999999999976 555554433 455788999995 8999999999
Q ss_pred EeCCCcHHHHHHHHHhhCCCceecCCCCCC----ccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-----c
Q 042207 124 IQAGATIGELYHKIADTSGTLGFPAGVCPS----VGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-----R 194 (518)
Q Consensus 124 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~----vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-----~ 194 (518)
+++|+.-.+|.+.|.+.|. ..|.+|. .++||+++..+.|+--..||..-|-|+.+++|+|.|.|.+ +
T Consensus 233 ~eaGIvGQ~LERqL~~~G~----t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PR 308 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGF----TCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPR 308 (613)
T ss_pred EecCcchHHHHHHHhhcCc----ccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCc
Confidence 9999999999999999873 3455554 4799999999999999999999999999999999999886 3
Q ss_pred cCCCchhHHHhhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHH
Q 042207 195 KSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVH 248 (518)
Q Consensus 195 ~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (518)
-+.+||+..-+.|+ .|++||||++|+|++|+|+.....++.|+.-+.-..+++
T Consensus 309 mS~GPDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~R 361 (613)
T KOG1233|consen 309 MSSGPDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFR 361 (613)
T ss_pred ccCCCCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHH
Confidence 45789999999999 899999999999999999987777888875433333343
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=2.6e-22 Score=198.07 Aligned_cols=162 Identities=18% Similarity=0.167 Sum_probs=141.9
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIG 131 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~ 131 (518)
....|.++++|+|++||++++++|+++++|+.++|+|||....+...+ +++|++++|+.+.+++ +.+++|+||+.+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 456799999999999999999999999999999999999887665554 8999999999887766 5699999999999
Q ss_pred HHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCcccc-ceeEEEEEeeCCeEEe-ccCCCchhHHHhhccC
Q 042207 132 ELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAAD-HVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGGG 209 (518)
Q Consensus 132 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d-~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~ 209 (518)
+|.+++.++| | .|.+..+||+| ++||+++++++.||...+ .|+++++|+++|++++ +. .|+.|+||.+.
T Consensus 86 ~l~~~~~~~G--l---~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~---~~~~f~YR~S~ 156 (284)
T TIGR00179 86 KLVKYALKNG--L---SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN---EQLGFGYRTSI 156 (284)
T ss_pred HHHHHHHHCC--C---cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH---HHccccCCccc
Confidence 9999999988 2 59999999999 899999999999999865 6899999999999987 33 59999999875
Q ss_pred CCC-e-EEEEEEEEEEEe
Q 042207 210 GAS-F-GVIVAWKVELVT 225 (518)
Q Consensus 210 ~g~-~-Givt~~~~~l~~ 225 (518)
.-. . .||++++|++.+
T Consensus 157 f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 157 FQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred cCCCCcEEEEEEEEEecc
Confidence 422 2 699999999844
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=2.8e-22 Score=199.51 Aligned_cols=162 Identities=22% Similarity=0.214 Sum_probs=137.6
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIG 131 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~ 131 (518)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++|++|+++ ..+++|+||+.+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 456799999999999999999999999999999999999874443333 899999999998876 4589999999999
Q ss_pred HHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCC-ccccceeEEEEEeeCCeEEe-ccCCCchhHHHhhccC
Q 042207 132 ELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYG-LAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGGG 209 (518)
Q Consensus 132 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~ 209 (518)
+|.+++.++|. .|.+...|++| +.||+.+++++.|| ...|.+.+++|++++|++++ +. .|+.|+||.+.
T Consensus 109 ~L~~~~~~~gl-----~Gle~~~giPG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~---~e~~f~YR~s~ 179 (305)
T PRK12436 109 DVSRIALDHNL-----TGLEFACGIPG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK---EAFEFGYRKSV 179 (305)
T ss_pred HHHHHHHHcCC-----ccchhhcCCcc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH---HHhcCcCCCCc
Confidence 99999999873 36666677877 68888888999998 56788889999999999998 43 58999999885
Q ss_pred CC-CeEEEEEEEEEEEec
Q 042207 210 GA-SFGVIVAWKVELVTI 226 (518)
Q Consensus 210 ~g-~~Givt~~~~~l~~~ 226 (518)
.. ...||++++|++.+.
T Consensus 180 ~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 180 FANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 43 257999999999864
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=5.4e-22 Score=196.99 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=136.9
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccC-CcceEEeCCCcEEEEeCCCcH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLIN-LRSISIDVEKTTAWIQAGATI 130 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~-~~~i~~d~~~~~v~v~~G~~~ 130 (518)
....|.+++.|++++||++++++|+++++|+.++|+|||....+.+.+ +++|+|++ ++.+.++ +.+++|+||+.+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 456899999999999999999999999999999999999864433333 89999986 4556543 469999999999
Q ss_pred HHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccC-CccccceeEEEEEeeCCeEEeccCCCchhHHHhhccC
Q 042207 131 GELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKY-GLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGG 209 (518)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~-G~~~d~v~~~~vV~~~G~i~~~~~~~~dl~~a~rg~~ 209 (518)
.+|.+++.++| | .|.++.+||+| ++||+..++++.| |.++|+|+++++|+++| +.+. ...|+.|+||++.
T Consensus 108 ~~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehhhcCcccceec
Confidence 99999999988 3 38999999999 9999999999755 67899999999999999 4441 1359999999975
Q ss_pred CCCeEEEEEEEEEEEecC
Q 042207 210 GASFGVIVAWKVELVTIP 227 (518)
Q Consensus 210 ~g~~Givt~~~~~l~~~~ 227 (518)
.+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 333489999999999854
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=8e-22 Score=196.23 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=139.7
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHHH
Q 042207 53 TPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGE 132 (518)
Q Consensus 53 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~~ 132 (518)
...+.+++.|++++||++++++|+++++|+.++|+|||....+.+.+ |++|++++|++|+++. .+++|+||+.+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~ 109 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIID 109 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHH
Confidence 35689999999999999999999999999999999999875444444 8999999999998764 4899999999999
Q ss_pred HHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCC-ccccceeEEEEEeeCCeEEe-ccCCCchhHHHhhccCC
Q 042207 133 LYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYG-LAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGGGG 210 (518)
Q Consensus 133 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~~ 210 (518)
|.+++.++| ..|.+..+||+| ++||+..++++.|| .++|+|+++++|+++|++++ ++ .|+.|+||.+..
T Consensus 110 l~~~~~~~G-----l~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~---~e~~f~YR~S~~ 180 (307)
T PRK13906 110 VSRVARDYA-----LTGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT---KELELDYRNSII 180 (307)
T ss_pred HHHHHHHcC-----CccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH---HHccCcCCcccC
Confidence 999999988 248888889999 89999999999995 78999999999999999998 43 489999998754
Q ss_pred CC-eEEEEEEEEEEEe
Q 042207 211 AS-FGVIVAWKVELVT 225 (518)
Q Consensus 211 g~-~Givt~~~~~l~~ 225 (518)
-. --||++++|++.|
T Consensus 181 ~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 181 QKEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCCEEEEEEEEEECC
Confidence 32 2499999999986
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=5.4e-21 Score=193.01 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=141.0
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIG 131 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~ 131 (518)
....+.+++.|++++||++++++|+++++|+.++|+|||....+-+.+ ++||+++ ++.++++.+..+|+|+||+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 456799999999999999999999999999999999999875444444 8999997 5888887666799999999999
Q ss_pred HHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeC-CeEEeccCCCchhHHHhhccC
Q 042207 132 ELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVK-GRLLDRKSMGEDLFWAIRGGG 209 (518)
Q Consensus 132 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~-G~i~~~~~~~~dl~~a~rg~~ 209 (518)
+|.+++.++| ..|.+..+||+| +.||+.-++.+.||. ++|.|.++++++.+ |++++. .+.||+|+||++.
T Consensus 106 ~l~~~a~~~G-----L~GlE~laGIPG-TVGGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~--~~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAG-----LGGLECLSGIPG-SAGATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWV--PAADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcC-----CccccccCCCCc-chhhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEE--EHHHcceeccccc
Confidence 9999999988 357888888888 678888889999986 58999999999965 999871 1469999999973
Q ss_pred C--CCeEEEEEEEEEEEecC
Q 042207 210 G--ASFGVIVAWKVELVTIP 227 (518)
Q Consensus 210 ~--g~~Givt~~~~~l~~~~ 227 (518)
. ++++|||+++|++.|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 2 24789999999999863
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=7.1e-20 Score=181.44 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=141.2
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCc-ceEEeCCCcEEEEeCCCcH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLR-SISIDVEKTTAWIQAGATI 130 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~-~i~~d~~~~~v~v~~G~~~ 130 (518)
......+++.|++++||++++++|+++++|+.++|+|||+...+.+.+ |+||+++.|+ .+..+.+..+|+|+||+.|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 455778899999999999999999999999999999999988777665 9999998755 6666655558999999999
Q ss_pred HHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCC-ccccceeEEEEEeeCCeEEe-ccCCCchhHHHhhcc
Q 042207 131 GELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYG-LAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGG 208 (518)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~ 208 (518)
.+|..++.++| ..|.++.+||+| ++||+.-++.+.|| .++|.|.++++++.+|++++ +. .||+|+||.+
T Consensus 95 ~~l~~~~~~~G-----L~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~---~el~f~YR~S 165 (295)
T PRK14649 95 AGTARRLAAQG-----WAGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV---HDFAYGYRTS 165 (295)
T ss_pred HHHHHHHHHcC-----CccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH---HHcCccccee
Confidence 99999999988 368889999999 99998888999886 57899999999999999987 43 4999999987
Q ss_pred CCCCe---------EEEEEEEEEEEecC
Q 042207 209 GGASF---------GVIVAWKVELVTIP 227 (518)
Q Consensus 209 ~~g~~---------Givt~~~~~l~~~~ 227 (518)
..-.. -||++++|++.|..
T Consensus 166 ~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 166 VLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ecccccccccccCCeEEEEEEEEECCCC
Confidence 44221 29999999998653
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=3e-18 Score=169.13 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=139.6
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIG 131 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~ 131 (518)
......+++.|++++|+++++++|++ ++|+.+.|+|+|....+.+.+ ++||.+++|+.++++. ..++|+||+.+.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~ 104 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLK 104 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHH
Confidence 34567789999999999999999999 999999999999987776665 9999998899998863 589999999999
Q ss_pred HHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeCCeEEe-ccCCCchhHHHhhccC
Q 042207 132 ELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGGG 209 (518)
Q Consensus 132 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~ 209 (518)
+|..++.++| ..|.+..+||+| +.||+.-++++.||. ++|.|+++++++ +|++++ .. .|+.|.||.+.
T Consensus 105 ~L~~~~~~~G-----L~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~---~e~~f~YR~S~ 174 (297)
T PRK14653 105 KLCLVAAKNG-----LSGFENAYGIPG-SVGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK---NEIKFSYRNSI 174 (297)
T ss_pred HHHHHHHHCC-----CcchhhhcCCch-hHHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch---hhccccCcccc
Confidence 9999999988 468899999999 799999999999998 899999999999 788877 33 49999999774
Q ss_pred CCC--eEEEEEEEEEEEecC
Q 042207 210 GAS--FGVIVAWKVELVTIP 227 (518)
Q Consensus 210 ~g~--~Givt~~~~~l~~~~ 227 (518)
... --|||+++||+.|..
T Consensus 175 ~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 175 FKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCCCCcEEEEEEEEEEecCC
Confidence 332 129999999998753
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.9e-17 Score=158.84 Aligned_cols=165 Identities=20% Similarity=0.203 Sum_probs=146.9
Q ss_pred CCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcH
Q 042207 51 AATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATI 130 (518)
Q Consensus 51 ~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~ 130 (518)
........++.|++++|+.++++++.+.++|+.+.|+|+|..-.+-+.+ +++|.+.+++.++++.+...|+|++|+.|
T Consensus 16 riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 16 RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPW 93 (291)
T ss_pred ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcH
Confidence 3556788999999999999999999999999999999999876665554 89999999999888877779999999999
Q ss_pred HHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeCCeEEe-ccCCCchhHHHhhcc
Q 042207 131 GELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGG 208 (518)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~ 208 (518)
.+|.+++.++| ..|.+..+||+| +.||+.-|+.+.||. ..|.+.++++++.+|++.+ +. .||-|+||-+
T Consensus 94 ~~l~~~~~~~g-----l~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~---~el~f~YR~S 164 (291)
T COG0812 94 HDLVRFALENG-----LSGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA---EELGFGYRTS 164 (291)
T ss_pred HHHHHHHHHcC-----CcchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEH---HHhCcccccC
Confidence 99999999988 479999999999 999999999999987 5899999999999999998 43 4999999988
Q ss_pred CCCCe-EEEEEEEEEEEec
Q 042207 209 GGASF-GVIVAWKVELVTI 226 (518)
Q Consensus 209 ~~g~~-Givt~~~~~l~~~ 226 (518)
....- .||++++|+|.|-
T Consensus 165 ~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 165 PFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred cCCCCCEEEEEEEEEeCCC
Confidence 54433 8999999999885
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=6.5e-17 Score=159.09 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=140.5
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcc-cCCCeEEEEccCCcceEEeCCCcEEEEeCCCcH
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYI-SHVPYVVIDLINLRSISIDVEKTTAWIQAGATI 130 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~-~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~ 130 (518)
......+++.|++++|+++++++|+++++|+.+.|+|+|....+.+ .+ ++||.+.+|+.++++. ..++|+||+.|
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 3456778899999999999999999999999999999998776655 54 8889887799998764 46999999999
Q ss_pred HHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeCCeEEe-ccCCCchhHHHhhcc
Q 042207 131 GELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGG 208 (518)
Q Consensus 131 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~ 208 (518)
.+|..++.++| ..|.+..+||+| +.||+.-++++.||. .+|.|.++++++.+|++++ .. .|+.|+||.+
T Consensus 105 ~~l~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~---~e~~f~YR~S 175 (302)
T PRK14650 105 EDLCKFALQNE-----LSGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF---KKEEFKYKIS 175 (302)
T ss_pred HHHHHHHHHcC-----CchhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH---HHcCcccccc
Confidence 99999999988 468999999999 999999999999985 6899999999999999887 33 5999999987
Q ss_pred CCCC-eEEEEEEEEEEEecC
Q 042207 209 GGAS-FGVIVAWKVELVTIP 227 (518)
Q Consensus 209 ~~g~-~Givt~~~~~l~~~~ 227 (518)
..-. =.||++++|++.|..
T Consensus 176 ~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 176 PFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 4321 259999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=6.7e-17 Score=161.39 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=138.8
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEe--CCC-cEEEEeCCC
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISID--VEK-TTAWIQAGA 128 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d--~~~-~~v~v~~G~ 128 (518)
.......++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.+ |++|.+ +|+.++++ .++ ..|+|+||+
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 34567889999999999999999999999999999999987766 554 898987 48888873 222 279999999
Q ss_pred cHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeC-CeEEe-ccCCCchhHHHh
Q 042207 129 TIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVK-GRLLD-RKSMGEDLFWAI 205 (518)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~-G~i~~-~~~~~~dl~~a~ 205 (518)
.|.+|.+++.++| ..|.+..+||+| +.||+.-+|++.||. ..|.|.++++++.+ |++++ +. .|+.|+|
T Consensus 93 ~~~~l~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~---~e~~f~Y 163 (334)
T PRK00046 93 NWHDLVLWTLQQG-----MPGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA---AECRFGY 163 (334)
T ss_pred cHHHHHHHHHHcC-----chhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH---HHcCccc
Confidence 9999999999988 468999999999 999999999999986 68999999999987 99887 43 5999999
Q ss_pred hccCCCC----eEEEEEEEEEEEec
Q 042207 206 RGGGGAS----FGVIVAWKVELVTI 226 (518)
Q Consensus 206 rg~~~g~----~Givt~~~~~l~~~ 226 (518)
|-+..-. --||++++|+|.|-
T Consensus 164 R~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 164 RDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred ccccCCCCCcCCEEEEEEEEEecCC
Confidence 9875432 23999999999884
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4.7e-16 Score=155.00 Aligned_cols=166 Identities=19% Similarity=0.179 Sum_probs=138.5
Q ss_pred CCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEe---CCCcEEEEeCCC
Q 042207 52 ATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISID---VEKTTAWIQAGA 128 (518)
Q Consensus 52 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d---~~~~~v~v~~G~ 128 (518)
......+++.|+|.+|+++++++|+++++|+.+.|+|+|....+.+.. |+||.+++|+.+++. .+...++|++|+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 345678899999999999999999999999999999999887666665 999999779888752 222479999999
Q ss_pred cHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEE--------------------ee
Q 042207 129 TIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLV--------------------DV 187 (518)
Q Consensus 129 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV--------------------~~ 187 (518)
.|.+|.+++.++| ..|.+..+||+| +.||+.-+|++.||. +.|.|.+++++ +.
T Consensus 104 ~~~~Lv~~~~~~g-----l~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~ 177 (354)
T PRK14648 104 PVAALLAFCAHHA-----LRGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDK 177 (354)
T ss_pred cHHHHHHHHHHcC-----CcchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccC
Confidence 9999999999988 469999999999 999999999999986 68999999999 45
Q ss_pred CCeE-------------EeccCCCchhHHHhhccCCCC---------eEEEEEEEEEEEecC
Q 042207 188 KGRL-------------LDRKSMGEDLFWAIRGGGGAS---------FGVIVAWKVELVTIP 227 (518)
Q Consensus 188 ~G~i-------------~~~~~~~~dl~~a~rg~~~g~---------~Givt~~~~~l~~~~ 227 (518)
+|++ ++ -...|+.|+||-+..-. --||++++|+|.|..
T Consensus 178 ~g~~~~~~~~~~~~~~~~~--~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 178 RGECLGLDGGPFTCSSFQT--VFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CCceecccccccccccceE--ecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 6776 22 12359999999875422 239999999998753
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.65 E-value=7.7e-17 Score=113.70 Aligned_cols=47 Identities=45% Similarity=0.844 Sum_probs=34.5
Q ss_pred cccCCCCccccccccCCcccccccchhhhhhhcccHHHHHHHHhhcCCCCCCcCCCCCC
Q 042207 449 SYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIP 507 (518)
Q Consensus 449 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~IK~kYDP~~vF~~~~~i~ 507 (518)
+|+||+|.+++. ..|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 599999988641 26899999999999999999999999999999997
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.64 E-value=2.9e-16 Score=152.91 Aligned_cols=198 Identities=18% Similarity=0.195 Sum_probs=150.8
Q ss_pred EecCCCCchhhHHhhcccccccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCC---CeE
Q 042207 27 IYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHV---PYV 103 (518)
Q Consensus 27 v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~---~~v 103 (518)
+++|-+-.|+-.+. .++ +|.......|. ..-+.+.+||+-|+..+..+-+-.+..+.-+|...|....+ ..-
T Consensus 30 f~LP~S~lF~~~i~--~r~-~~~~~~ssa~~--~H~qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~ 104 (543)
T KOG1262|consen 30 FLLPLSFLFDLFIY--FRI-WLVRKLSSAPR--EHQQRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHH 104 (543)
T ss_pred hhhhHHHHHHHHHH--HHH-HHHHHhccCch--HHHHHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcc
Confidence 45566666665532 222 34443334444 34456677777777766666666666666666654444321 234
Q ss_pred EEEccCCcc-eEEeCCCcEEEEeCCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEE
Q 042207 104 VIDLINLRS-ISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDA 182 (518)
Q Consensus 104 vidl~~~~~-i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~ 182 (518)
-|++..+.+ +++|.++.+|+|+|+|+++++.++|.+.|+.|++. ......++||++.|-|+-..|.+||+..+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhee
Confidence 566774444 59999999999999999999999999999877654 5566789999999999999999999999999999
Q ss_pred EEEeeCCeEEe--ccCCCchhHHHhhccCCCCeEEEEEEEEEEEecCCeeE
Q 042207 183 HLVDVKGRLLD--RKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVT 231 (518)
Q Consensus 183 ~vV~~~G~i~~--~~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~~~ 231 (518)
|||++||++++ ..++++|||+|+-.+ .|++|..+.+|+|+.|+.+.+.
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEcccc-cCchheeeeeEEEEEeccceEE
Confidence 99999999998 445899999999999 6899999999999999988543
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.54 E-value=7.1e-14 Score=135.73 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=124.0
Q ss_pred CCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccC-CcceEEeCCCcEEEEeCCCcHHHH
Q 042207 55 KPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLIN-LRSISIDVEKTTAWIQAGATIGEL 133 (518)
Q Consensus 55 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~-~~~i~~d~~~~~v~v~~G~~~~~l 133 (518)
...+++ |++++|+++++ ++|+.+.|+|+|....+.+.+ ++||.+.+ ++.++++. +|++|+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHH
Confidence 445566 99999999988 599999999999887666565 89998865 66665532 69999999999
Q ss_pred HHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeCCeEEe-ccCCCchhHHHhhccCCC
Q 042207 134 YHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGGGGA 211 (518)
Q Consensus 134 ~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~~g 211 (518)
.+++.++| ..|.+..+||+| +.||+.-+|++.||. +.|.|.++++++ +|++++ +. .|+.|+||.+...
T Consensus 86 ~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~---~e~~f~YR~S~~~ 155 (273)
T PRK14651 86 VRRAARLG-----LSGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP---DELGFGYRHSGLP 155 (273)
T ss_pred HHHHHHCC-----CcchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH---HHccccccccCCC
Confidence 99999988 469999999999 999999999999985 689999999997 899887 43 5999999987543
Q ss_pred CeEEEEEEEEEEEec
Q 042207 212 SFGVIVAWKVELVTI 226 (518)
Q Consensus 212 ~~Givt~~~~~l~~~ 226 (518)
.--||++++|++.|-
T Consensus 156 ~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 156 PGHVVTRVRLKLRPS 170 (273)
T ss_pred CCEEEEEEEEEECCC
Confidence 224999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.27 E-value=1.6e-11 Score=118.13 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=117.0
Q ss_pred CCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHHH
Q 042207 53 TPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGE 132 (518)
Q Consensus 53 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~~ 132 (518)
.....+++.|++.+ + ++|+.+.|+|+|....+.+.+ +++ -++.|+.++++. ..++|+||+.+.+
T Consensus 16 GG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~ 79 (257)
T PRK13904 16 GPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGK 79 (257)
T ss_pred CceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHH
Confidence 34566677888887 5 899999999999876555543 454 345688888854 4799999999999
Q ss_pred HHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCc-cccceeEEEEEeeCCeEEeccCCCchhHHHhhccCCC
Q 042207 133 LYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL-AADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGA 211 (518)
Q Consensus 133 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dl~~a~rg~~~g 211 (518)
|.+++.++| ..|.+..+||+| +.||+.-+|++.||. .+|.|.++++++ |+ +. ..|+.|+||-+..
T Consensus 80 l~~~~~~~g-----l~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~~----~~e~~f~YR~S~~- 145 (257)
T PRK13904 80 IFNYAKKNN-----LGGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-IE----KEDIGFGYRSSGI- 145 (257)
T ss_pred HHHHHHHCC-----CchhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-Ee----HHHCcccccCcCC-
Confidence 999999988 469999999999 899999999999986 689999999998 53 22 3599999998743
Q ss_pred CeEEEEEEEEEEEecC
Q 042207 212 SFGVIVAWKVELVTIP 227 (518)
Q Consensus 212 ~~Givt~~~~~l~~~~ 227 (518)
-.||++++|||.|..
T Consensus 146 -~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 -NGVILEARFKKTHGF 160 (257)
T ss_pred -CcEEEEEEEEECCCC
Confidence 259999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.38 E-value=0.0026 Score=58.25 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=51.7
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGL-SYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGEL 133 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~-~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l 133 (518)
+..++.|+|.+|+.++++ .+-...+.+||++.... .........+||++++..+ .|..+.+.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 456799999999999999 34467899999985311 1111012689999976543 23334678999999999999
Q ss_pred HHH
Q 042207 134 YHK 136 (518)
Q Consensus 134 ~~~ 136 (518)
.+.
T Consensus 78 ~~~ 80 (171)
T PF00941_consen 78 EES 80 (171)
T ss_dssp HHH
T ss_pred hhc
Confidence 875
No 35
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.48 E-value=0.061 Score=52.61 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=61.8
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHHHH
Q 042207 59 IVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELYHK 136 (518)
Q Consensus 59 vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 136 (518)
++.|+|.+|..++++ +++-.-.+.+|||+.. ...... ..++||+++. .+ .|..+.+.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~--~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~ 77 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTD--KKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDN 77 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccC--CCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhC
Confidence 578999999998766 3433457789999974 322211 2588999875 43 23445568999999999998742
Q ss_pred ------HHhhCCCceecCCCCCCccchhhhcCC
Q 042207 137 ------IADTSGTLGFPAGVCPSVGVGGHFSGG 163 (518)
Q Consensus 137 ------l~~~g~~l~~~~g~~~~vgigG~~~gg 163 (518)
|.+.-..+ -.+..-+..++||.+..+
T Consensus 78 ~~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a 109 (257)
T TIGR03312 78 ELTPAALKEALGFV-YSRHIRNQATIGGEIAAF 109 (257)
T ss_pred cchHHHHHHHHHHh-CCHHHhccccHHHHhhcC
Confidence 22211001 012334445788877754
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=94.90 E-value=0.088 Score=51.56 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHHHH
Q 042207 58 VIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELYHK 136 (518)
Q Consensus 58 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 136 (518)
.++.|+|.+|+.++++ +++-...+.+||++..... ......++||++++ .+ .|..+.+.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4689999999998876 3433467899999974211 11123689999976 43 34446678999999999999863
Q ss_pred H------HhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccc-----eeEEEEEeeCCeEEeccCCCchhHHHh
Q 042207 137 I------ADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADH-----VVDAHLVDVKGRLLDRKSMGEDLFWAI 205 (518)
Q Consensus 137 l------~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~-----v~~~~vV~~~G~i~~~~~~~~dl~~a~ 205 (518)
. .+.-..+ -.+..-+..+|||.+..+.- .+|. .+..+|+..+++.+.- .|+|
T Consensus 79 ~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~--- 141 (258)
T PRK09799 79 RFIPAALREALGFV-YSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL--- 141 (258)
T ss_pred cccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc---
Confidence 2 1111000 01122334568887775421 1232 2566777776654421 2443
Q ss_pred hccCCCCeEEEEEEEEE
Q 042207 206 RGGGGASFGVIVAWKVE 222 (518)
Q Consensus 206 rg~~~g~~Givt~~~~~ 222 (518)
.|. .=.|||++.+.
T Consensus 142 ~g~---~~Eil~~I~iP 155 (258)
T PRK09799 142 ACP---CDRLLTEIIIP 155 (258)
T ss_pred CCC---CCcEEEEEEcC
Confidence 222 22588888764
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.49 E-value=0.079 Score=52.89 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=51.8
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcccCCCeEEEEccCCcce-EEe-CCCcEEEEeCCCcHHHHH
Q 042207 58 VIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYISHVPYVVIDLINLRSI-SID-VEKTTAWIQAGATIGELY 134 (518)
Q Consensus 58 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~~~~~~vvidl~~~~~i-~~d-~~~~~v~v~~G~~~~~l~ 134 (518)
-++.|+|.+|..++++. +. ...+.+|||+.. ...........+||++++..+ .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999999988773 22 457899999963 211222123688999976543 233 234579999999999997
Q ss_pred H
Q 042207 135 H 135 (518)
Q Consensus 135 ~ 135 (518)
+
T Consensus 82 ~ 82 (291)
T PRK09971 82 E 82 (291)
T ss_pred c
Confidence 5
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.91 E-value=0.3 Score=52.08 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=66.2
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGEL 133 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l 133 (518)
..-++.|+|.+|+.++++. +. ...+.+||++.. ...........+||++++..+ .|..+.+.++++|++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999998863 32 467899999963 211222123688999987553 24445668999999999999
Q ss_pred HHHHHhhCCCce-----e-cCCCCCCccchhhhcCC
Q 042207 134 YHKIADTSGTLG-----F-PAGVCPSVGVGGHFSGG 163 (518)
Q Consensus 134 ~~~l~~~g~~l~-----~-~~g~~~~vgigG~~~gg 163 (518)
.+.+.+.=-.|. + ....-+..+|||.+..+
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 865544210000 0 12233445678877654
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.68 E-value=0.54 Score=47.42 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=50.9
Q ss_pred cEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHH
Q 042207 57 QVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELY 134 (518)
Q Consensus 57 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 134 (518)
-.++.|+|.+|..++++. +. .-.+.+||++.. ..-........+||+.++..+ .|..+.+.+++|+++++.++.
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 357899999999988763 22 346899999852 111111123688999976442 233345679999999999985
Q ss_pred H
Q 042207 135 H 135 (518)
Q Consensus 135 ~ 135 (518)
+
T Consensus 81 ~ 81 (321)
T TIGR03195 81 E 81 (321)
T ss_pred h
Confidence 4
No 40
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=89.75 E-value=0.17 Score=49.69 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=25.1
Q ss_pred hhhhhhhcccHHHHHHHHhhcCCCCCCcCCCCCC
Q 042207 474 IWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIP 507 (518)
Q Consensus 474 ~~~~~y~G~n~~RL~~IK~kYDP~~vF~~~~~i~ 507 (518)
.| ..-||+.++|+++.|++|||.+++.-.|.|.
T Consensus 249 dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 249 DW-RRHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp HH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred HH-HHHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 67 5789999999999999999999999888873
No 41
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=89.39 E-value=0.55 Score=46.14 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcc-cCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHHH
Q 042207 62 PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYI-SHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELYH 135 (518)
Q Consensus 62 p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~-~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 135 (518)
|+|.+|+.++++. +. ...+.+||++.. ..... ......+||++++..+ .|+.+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 7888888888874 22 367899999863 21111 1112688999987654 3455667899999999999963
No 42
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=85.62 E-value=1.1 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=17.0
Q ss_pred ccHHHHHHHHhhcCCCCCCcCC
Q 042207 482 NNFDRLVVVKTMVDPHNFFRNE 503 (518)
Q Consensus 482 ~n~~RL~~IK~kYDP~~vF~~~ 503 (518)
+++++-.+||+++||+|+|.++
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 8999999999999999999763
No 43
>PLN02906 xanthine dehydrogenase
Probab=84.03 E-value=2.1 Score=51.70 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=56.0
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYE-GLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGEL 133 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~-g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l 133 (518)
...++.|+|.+|+.++++. +. ...+.+||++.. ..........++||++++..+ .|..+...++++|++++.++
T Consensus 228 ~~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el 303 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSEL 303 (1319)
T ss_pred CceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHH
Confidence 3468999999999988764 21 357889999973 211222223689999976553 34445668999999999999
Q ss_pred HHHHHh
Q 042207 134 YHKIAD 139 (518)
Q Consensus 134 ~~~l~~ 139 (518)
.+.|.+
T Consensus 304 ~~~l~~ 309 (1319)
T PLN02906 304 QNLFRK 309 (1319)
T ss_pred HHHHHH
Confidence 986443
No 44
>PLN00192 aldehyde oxidase
Probab=82.32 E-value=3.2 Score=50.16 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=57.0
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELY 134 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 134 (518)
..-++.|.|.+|+.++++.....+-...+..||++..-.-. .....++||+++...+ .|..+.+.+++||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 45689999999999887642101124678899999632211 2123689999976553 344456789999999999998
Q ss_pred HHHHh
Q 042207 135 HKIAD 139 (518)
Q Consensus 135 ~~l~~ 139 (518)
+.+.+
T Consensus 312 ~~l~~ 316 (1344)
T PLN00192 312 EALRE 316 (1344)
T ss_pred HHHHh
Confidence 76554
No 45
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=81.87 E-value=2 Score=40.97 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=19.6
Q ss_pred hhhhhhcc-cHHHHHHHHhhcCCCCCCc
Q 042207 475 WGRKYFRN-NFDRLVVVKTMVDPHNFFR 501 (518)
Q Consensus 475 ~~~~y~G~-n~~RL~~IK~kYDP~~vF~ 501 (518)
|-...+|+ .+.-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 33344554 7999999999999999986
No 46
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=81.72 E-value=3.8 Score=49.57 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=55.4
Q ss_pred cEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CCcccCCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHHH
Q 042207 57 QVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEG-LSYISHVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGELY 134 (518)
Q Consensus 57 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g-~~~~~~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 134 (518)
..++.|+|.+|+.++++. +. ...+..||++..- ..........+||+++...+ .|..+.+.++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 468999999999998764 22 3578899999732 21211112588999976654 344456789999999999998
Q ss_pred HHHH
Q 042207 135 HKIA 138 (518)
Q Consensus 135 ~~l~ 138 (518)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8644
No 47
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=80.64 E-value=2.6 Score=40.76 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=20.1
Q ss_pred ccHHHHHHHHhhcCCCCCCcCC
Q 042207 482 NNFDRLVVVKTMVDPHNFFRNE 503 (518)
Q Consensus 482 ~n~~RL~~IK~kYDP~~vF~~~ 503 (518)
.++.+-.+||+++||+|+|.++
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6899999999999999999865
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=76.02 E-value=9 Score=37.92 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=53.0
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CCcccCCCeEEEEccCCcc--eEEeCCCcEEEEeCCCcHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEG-LSYISHVPYVVIDLINLRS--ISIDVEKTTAWIQAGATIGE 132 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g-~~~~~~~~~vvidl~~~~~--i~~d~~~~~v~v~~G~~~~~ 132 (518)
+..+.+|.|.+|...+++ +.+ --.+.+|||++.- .-.......-+||+.++.. ..+..+.+.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 567889999998887777 444 6788999999642 1111111367899998742 23334567799999999999
Q ss_pred HH
Q 042207 133 LY 134 (518)
Q Consensus 133 l~ 134 (518)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 96
No 49
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=74.70 E-value=11 Score=36.75 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=67.6
Q ss_pred chhhhHHHHhccCCCCCCCcccceEecCCCCchhhHHhhcccccccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeE
Q 042207 3 DAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQV 82 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~ 82 (518)
|+.+-|++.|.|-. .|++||-++.+.... . ...++.+|++++-+...+.|.+-
T Consensus 120 ~a~~~l~~~LlP~a---------~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~ 172 (263)
T COG0351 120 EAVEALREELLPLA---------TVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKA 172 (263)
T ss_pred HHHHHHHHHhhccC---------eEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCE
Confidence 55666777776544 899999998886642 1 26789999999999999999999
Q ss_pred EEEeCCCCCCCCCcccCCCeEEEEccCCcce---EEeCCCcEEEEeCCCcHHHHHHHHHhhC
Q 042207 83 RVRSGGHDYEGLSYISHVPYVVIDLINLRSI---SIDVEKTTAWIQAGATIGELYHKIADTS 141 (518)
Q Consensus 83 ~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i---~~d~~~~~v~v~~G~~~~~l~~~l~~~g 141 (518)
.+.=|||... ... -++.|-..+..+ .++.. =+=|.||++......-..+|
T Consensus 173 VliKGGH~~~---~~~---D~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 173 VLIKGGHLEG---EAV---DVLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEEcCCCCCC---Cce---eEEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 9999999764 111 244443311111 12222 13688999977664433344
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=68.26 E-value=11 Score=38.35 Aligned_cols=141 Identities=21% Similarity=0.143 Sum_probs=84.1
Q ss_pred CcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccc-CCCeEEEEccCCcce-EEeCCCcEEEEeCCCcHHHH
Q 042207 56 PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYIS-HVPYVVIDLINLRSI-SIDVEKTTAWIQAGATIGEL 133 (518)
Q Consensus 56 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~-~~~~vvidl~~~~~i-~~d~~~~~v~v~~G~~~~~l 133 (518)
-..++.|.+.+|+..++. .+-..++..|++.+.-..+.. .+-..||-++++..+ +|+...+.+++++|+++.+.
T Consensus 203 ~~r~~~P~~l~D~a~l~a----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLA----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHh----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 445789999999998875 345677888888864322211 112455666666654 45667789999999999999
Q ss_pred HHHHHhhCCCce---ecCCC---CCCccchhhhcCCC-CCCccccCCccccceeEEEEEeeCCeEEeccCCCchhHHHhh
Q 042207 134 YHKIADTSGTLG---FPAGV---CPSVGVGGHFSGGG-YGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIR 206 (518)
Q Consensus 134 ~~~l~~~g~~l~---~~~g~---~~~vgigG~~~ggg-~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dl~~a~r 206 (518)
+..|...=-.|. ---|+ -+.-+|||.+.+|. +|-... .=..++.++++-.|+-.+ .-.-.|.|-+|+
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtPP-----aLIALgA~ltLr~g~~~R-tlPLe~~Fi~Y~ 352 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTPP-----ALIALGATLTLRSGDGRR-TLPLEDYFIAYG 352 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCCCc-----hhhhcCcEEEEEecCCcc-cccHHHHHHHhh
Confidence 999876421000 00122 12235677666553 221111 112477788887766443 122347888775
No 51
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=65.59 E-value=11 Score=40.06 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCCcccceEecCCCCchhhHHhhcccccccccCCCCCCcEEEecCCHHHHHHHHHHHHHc-CCeEEE
Q 042207 18 NSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWH-GMQVRV 84 (518)
Q Consensus 18 ~~~~~~~~~v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~-~~~~~~ 84 (518)
++|.++.|.++.-+-|+-+.+.. ++.. ......|-.+++|.++++|..+++.|+++ ..|+.+
T Consensus 119 a~G~~I~gvvIsAGIP~le~A~E-lI~~----L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 119 ASGAPIDGVVISAGIPSLEEAVE-LIEE----LGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred hcCCCcceEEEecCCCcHHHHHH-HHHH----HhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 45778999999999999998853 2211 12346789999999999999999999998 567765
No 52
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=61.14 E-value=15 Score=40.24 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.1
Q ss_pred ccHHHHHHHHhhcCCCCCCcCC
Q 042207 482 NNFDRLVVVKTMVDPHNFFRNE 503 (518)
Q Consensus 482 ~n~~RL~~IK~kYDP~~vF~~~ 503 (518)
.++.+-++|++++||+|+|.++
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 4899999999999999999865
No 53
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=59.82 E-value=33 Score=30.16 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=31.0
Q ss_pred EecCCHHHHHHHHHHHHHcCCeEEEEe-CCCCCCCCCc
Q 042207 60 VKPLQVSHIQSVIFCSQWHGMQVRVRS-GGHDYEGLSY 96 (518)
Q Consensus 60 v~p~~~~dv~~~v~~a~~~~~~~~~~g-~Gh~~~g~~~ 96 (518)
+.|+..+-+...+.+++.+++||.+.. .|+++.+.-.
T Consensus 10 vwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~ 47 (165)
T PF03614_consen 10 VWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVS 47 (165)
T ss_pred cCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEe
Confidence 789999999999999999999998876 6777654433
No 54
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=58.62 E-value=17 Score=39.25 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=24.8
Q ss_pred hhhhhhc-ccHHHHHHHHhhcCCCCCCcCCCCC
Q 042207 475 WGRKYFR-NNFDRLVVVKTMVDPHNFFRNEQSI 506 (518)
Q Consensus 475 ~~~~y~G-~n~~RL~~IK~kYDP~~vF~~~~~i 506 (518)
|-...|| +.++-+++||+.+||+|+++-.--+
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 3344566 6799999999999999999755444
No 55
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=57.20 E-value=7 Score=41.09 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=23.0
Q ss_pred hhhhhhhc-ccHHHHHHHHhhcCCCCCCc
Q 042207 474 IWGRKYFR-NNFDRLVVVKTMVDPHNFFR 501 (518)
Q Consensus 474 ~~~~~y~G-~n~~RL~~IK~kYDP~~vF~ 501 (518)
.|....|| ..++-|++||+.+||+|+|+
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 35555566 47999999999999999986
No 56
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=56.93 E-value=20 Score=39.26 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=26.9
Q ss_pred hhhhhhhc-ccHHHHHHHHhhcCCCCCCcCCCCCC
Q 042207 474 IWGRKYFR-NNFDRLVVVKTMVDPHNFFRNEQSIP 507 (518)
Q Consensus 474 ~~~~~y~G-~n~~RL~~IK~kYDP~~vF~~~~~i~ 507 (518)
.|-..+|| +.++-+++||+.+||+|+|+-.-=++
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 56677777 47999999999999999997544333
No 57
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=52.36 E-value=7.9 Score=40.31 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=20.0
Q ss_pred ccHHHHHHHHhhcCCCCCCcCC
Q 042207 482 NNFDRLVVVKTMVDPHNFFRNE 503 (518)
Q Consensus 482 ~n~~RL~~IK~kYDP~~vF~~~ 503 (518)
.|+++-.+||+++||+++|...
T Consensus 485 ~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred cChHHHHHHHHhcCccchhhhh
Confidence 6999999999999999999643
No 58
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=49.12 E-value=25 Score=31.86 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=54.4
Q ss_pred chhhhHHHHhccCCCCCCCcccceEecCCCCchhhHH----h---hcccccccccC-------CCCCCcEEEecCCHH-H
Q 042207 3 DAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSIL----D---FTIQNRRFLTA-------ATPKPQVIVKPLQVS-H 67 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~----~---~~~~n~~~~~~-------~~~~p~~vv~p~~~~-d 67 (518)
++-+|--.||.|++++ +|.||.-+--+-+... . ......+|... ....=..++.|.+.+ |
T Consensus 22 ~~iedaARlLAQA~vg-----eG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e 96 (172)
T PF10740_consen 22 ESIEDAARLLAQAIVG-----EGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEE 96 (172)
T ss_dssp HHHHHHHHHHHHHHHT-----T--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HH
T ss_pred hhHHHHHHHHHHHHhc-----CCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHH
Confidence 3557788999999977 5799987654432211 0 11122345521 122234566777777 9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCC
Q 042207 68 IQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGA 128 (518)
Q Consensus 68 v~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~ 128 (518)
++++++-+.+.+++++..+ -..-...+...- --+-||++--+.+--+++...+ +.|..
T Consensus 97 ~~~~a~~L~~~gi~~v~Vs-~~~~~~~~l~~~-~~~~Idl~~~~~LvP~EdG~Ri-g~P~~ 154 (172)
T PF10740_consen 97 AVALAKQLIEQGIPFVGVS-PNKPDEEDLEDL-ADVHIDLKLPKPLVPTEDGDRI-GFPHL 154 (172)
T ss_dssp HHHHHHHHHHHT--EEEEE--SS---TTGGG--SSS-EE----S-SEE-TTS-EE----HH
T ss_pred HHHHHHHHHHCCCCEEEEE-ecCCCCCchhhh-hhheeecccCCCcccCCCCCEe-cchHH
Confidence 9999999999999999999 111112222221 1366888776666555554333 44443
No 59
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.37 E-value=32 Score=34.63 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=40.7
Q ss_pred ceEecCCCCchhhHHhhcccccccccCCCCCCcEEEecCC------HHHHHHHHHHHHHcC------CeEEEEeCCC
Q 042207 25 KVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQ------VSHIQSVIFCSQWHG------MQVRVRSGGH 89 (518)
Q Consensus 25 ~~v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~------~~dv~~~v~~a~~~~------~~~~~~g~Gh 89 (518)
|-|..|+.+.|.+.++.- +.|| +....+++|.. +++|.++++.+.+.+ +=|.+||||+
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~-----~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRN-----PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhC-----CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 466777888898886533 3366 34667777765 688999999998765 4456677774
No 60
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=43.22 E-value=16 Score=37.57 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.3
Q ss_pred ccc-HHHHHHHHhhcCCCCCCcC
Q 042207 481 RNN-FDRLVVVKTMVDPHNFFRN 502 (518)
Q Consensus 481 G~n-~~RL~~IK~kYDP~~vF~~ 502 (518)
..+ .+-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 6888999999999999963
No 61
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=38.86 E-value=1.7e+02 Score=30.62 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEeCC
Q 042207 54 PKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGG 88 (518)
Q Consensus 54 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~G 88 (518)
+....|+.|+..|-..++.+.|+++|+++.-|+.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 35789999999999999999999999999999998
No 62
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=35.12 E-value=46 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=23.7
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcc
Q 042207 58 VIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRS 112 (518)
Q Consensus 58 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~ 112 (518)
.++.|++-+|+.+++...++.+ .|++||+.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 5789999999999998877643 68899988875
No 63
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=34.80 E-value=3.6e+02 Score=29.60 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEcc--CCcc---eEEeCCC---cEEEEeCCC----cHHH
Q 042207 65 VSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLI--NLRS---ISIDVEK---TTAWIQAGA----TIGE 132 (518)
Q Consensus 65 ~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~--~~~~---i~~d~~~---~~v~v~~G~----~~~~ 132 (518)
.++|.+.+..+.+++-++..+..-.++...-.+. -|+||-| .|=+ --.+++. .+.-|=|-- ...+
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPs---DVIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq~ 388 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPS---DVIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQV 388 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCc---CeEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHHHH
Confidence 5779999999999999999999888776666665 4888854 2211 0122222 122233322 2466
Q ss_pred HHHHHHhhCCCceecCCCCCCccchhhhcCC--CCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHHHhh
Q 042207 133 LYHKIADTSGTLGFPAGVCPSVGVGGHFSGG--GYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIR 206 (518)
Q Consensus 133 l~~~l~~~g~~l~~~~g~~~~vgigG~~~gg--g~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~r 206 (518)
+++.+.++|..=....|+.+.||+ ++-- -||..-..|-...|- -++||+.+|+++. -..+..|+|+++.
T Consensus 389 ~I~~ck~nGafDp~TmGsV~NVGL---MAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIwRmcq 460 (741)
T TIGR00178 389 VIEDCKQNGAFDPTTMGTVPNVGL---MAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIWRMCQ 460 (741)
T ss_pred HHHHHHhcCCCCcccccCCcchhH---hHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcchhhhh
Confidence 778888888421223466766665 3322 123222222222222 2678899999886 3445678888775
No 64
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.61 E-value=45 Score=30.68 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCCC
Q 042207 69 QSVIFCSQWHGMQVRVRSGGHDYEG 93 (518)
Q Consensus 69 ~~~v~~a~~~~~~~~~~g~Gh~~~g 93 (518)
.+.++||+++++|+.|.++|.++.-
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHH
Confidence 4577899999999999999998643
No 65
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.18 E-value=50 Score=34.98 Aligned_cols=57 Identities=28% Similarity=0.380 Sum_probs=38.3
Q ss_pred ceEecCCCCchhhHHhhcccccccccCCCCCCcEEEecCCH------HHHHHHHHHHHHc--CCeEEEEeCC
Q 042207 25 KVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQV------SHIQSVIFCSQWH--GMQVRVRSGG 88 (518)
Q Consensus 25 ~~v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~------~dv~~~v~~a~~~--~~~~~~~g~G 88 (518)
|.|..|+.+.+.+.++.- +.||. .-...++|..+ .+|.++++.+.+. .+=|.+||||
T Consensus 139 ~viTs~~gAa~~D~~~~~--~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILTVL--RRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHHHH--HhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 456667788888886532 45663 34667777665 7888888888774 4455666666
No 66
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.87 E-value=63 Score=29.58 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=33.1
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEEEe-CCCC
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRS-GGHD 90 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g-~Gh~ 90 (518)
||.. ...|..||++++++++.++.+.|++.+++..+.- .|-+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrT 160 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRT 160 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 4754 3479999999999999999999999998765443 4433
No 67
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=30.37 E-value=62 Score=34.03 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=35.1
Q ss_pred ceEecCCCCchhhHHhhcccccccccCCCCCCcEEEecCC------HHHHHHHHHHHHHcC-CeEEEEe
Q 042207 25 KVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQ------VSHIQSVIFCSQWHG-MQVRVRS 86 (518)
Q Consensus 25 ~~v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~------~~dv~~~v~~a~~~~-~~~~~~g 86 (518)
|.|..|..+...+.++. -..||. .-..+++|.. .++|.++|+.|++.+ +-+.+.|
T Consensus 139 GVITS~tgAairDIl~~--~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVa 200 (440)
T COG1570 139 GVITSPTGAALRDILHT--LSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVA 200 (440)
T ss_pred EEEcCCchHHHHHHHHH--HHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEe
Confidence 45666677777766542 234663 3466677765 478999999998877 5544444
No 68
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=29.89 E-value=76 Score=28.20 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=26.9
Q ss_pred cEEEecCCHHHHHHHHHHHHHcCCeEEEEe
Q 042207 57 QVIVKPLQVSHIQSVIFCSQWHGMQVRVRS 86 (518)
Q Consensus 57 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g 86 (518)
..|+.|.+.+|+..++++|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 568999999999999999999888988873
No 69
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=26.10 E-value=1e+02 Score=27.95 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=27.1
Q ss_pred cEEEecCCHHHHHHHHHHHHH--cCCeEEEEeCC
Q 042207 57 QVIVKPLQVSHIQSVIFCSQW--HGMQVRVRSGG 88 (518)
Q Consensus 57 ~~vv~p~~~~dv~~~v~~a~~--~~~~~~~~g~G 88 (518)
..|+.|.+.+|+..++++|-+ ..-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 778999999999999999999 67898888643
No 70
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=26.08 E-value=1.3e+02 Score=25.34 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=33.5
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQV-RVRSGGHD 90 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~~~g~Gh~ 90 (518)
+|.. ...+..|+.+.+++++.++.+.|++.|++. .++=.|+.
T Consensus 41 ~W~~--~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 41 EWLN--EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHHH--CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 4643 357899999999999999999999999885 45556654
No 71
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=24.65 E-value=1.4e+02 Score=25.32 Aligned_cols=32 Identities=3% Similarity=0.029 Sum_probs=29.0
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHHcCCeEEEE
Q 042207 54 PKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVR 85 (518)
Q Consensus 54 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ 85 (518)
.....|+...+++|+.++-+.|++.|++..++
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 46899999999999999999999999987764
No 72
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=23.87 E-value=52 Score=26.81 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.6
Q ss_pred HHHHhhcCCCCCCc
Q 042207 488 VVVKTMVDPHNFFR 501 (518)
Q Consensus 488 ~~IK~kYDP~~vF~ 501 (518)
.+|.+||||+|.+.
T Consensus 79 ~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 79 EELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHTTT-TTH
T ss_pred HHHHHHHCCCcchh
Confidence 56889999999764
No 73
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=23.25 E-value=72 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCeEEEE--eCCCCC
Q 042207 64 QVSHIQSVIFCSQWHGMQVRVR--SGGHDY 91 (518)
Q Consensus 64 ~~~dv~~~v~~a~~~~~~~~~~--g~Gh~~ 91 (518)
|.+||+++|++|+..||+|.+- .-||.-
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 6789999999999999999765 456653
No 74
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.10 E-value=81 Score=32.02 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEE--eCCCC
Q 042207 63 LQVSHIQSVIFCSQWHGMQVRVR--SGGHD 90 (518)
Q Consensus 63 ~~~~dv~~~v~~a~~~~~~~~~~--g~Gh~ 90 (518)
=|.+||+++|++|++.||.|.+- .=||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 38999999999999999998754 35554
No 75
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.84 E-value=1e+02 Score=25.32 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=29.0
Q ss_pred CC-cEEEecCCHHHHHHHHHHHHHcCCeEEEEeCC
Q 042207 55 KP-QVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGG 88 (518)
Q Consensus 55 ~p-~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~G 88 (518)
.| ..+|.+.+-.|+..++.+|.++|+||.+.+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 45 45677788899999999999999999998865
No 76
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.00 E-value=89 Score=31.26 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEE--eCCCC
Q 042207 62 PLQVSHIQSVIFCSQWHGMQVRVR--SGGHD 90 (518)
Q Consensus 62 p~~~~dv~~~v~~a~~~~~~~~~~--g~Gh~ 90 (518)
.=|.+|++++|++|++.|+.|.+- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 347899999999999999998753 35665
No 77
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=21.66 E-value=1.6e+02 Score=24.70 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=33.8
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQV-RVRSGGHD 90 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~~~g~Gh~ 90 (518)
+|.. ...+..|+...+++++.++.+.|++.|++. .++-.|+.
T Consensus 44 ~W~~--~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 44 EWEN--NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp HHHH--TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred HHhc--CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 3653 357899999999999999999999999986 45567876
No 78
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=21.63 E-value=4.7e+02 Score=28.01 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcccCCCeEEEEcc--CCcce--E-EeCC---CcEEEEeCCCc----HHH
Q 042207 65 VSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLI--NLRSI--S-IDVE---KTTAWIQAGAT----IGE 132 (518)
Q Consensus 65 ~~dv~~~v~~a~~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~--~~~~i--~-~d~~---~~~v~v~~G~~----~~~ 132 (518)
-++|.+-+..+.+++--+....+-.++...-.+. -|++|-| .|=+- . .+.+ ..|--|-|--+ ..+
T Consensus 314 r~eI~~~~~~~~a~~p~laMVdS~kGItNlhvPS---DVIVDASMPAMir~sg~mw~~dgk~kDTkAviPdstya~iYq~ 390 (744)
T COG2838 314 RAEIEADIHAVYAHRPDLAMVDSDKGITNLHVPS---DVIVDASMPAMIRNSGRMWGKDGKLKDTKAVIPDSTYAGIYQE 390 (744)
T ss_pred HHHHHHHHHHHHhcCCcceeeecccCcccccCCc---ceeeeCCcHHHHhccccccCCccccccccccCcchhHHHHHHH
Confidence 3688888999999999999998877776655555 4777754 23110 1 1222 12222333333 356
Q ss_pred HHHHHHhhCCCceecCCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-ccCCCchhHHHhh
Q 042207 133 LYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIR 206 (518)
Q Consensus 133 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dl~~a~r 206 (518)
+++.+..+|..=+...|+.|.||+.. --.--+|..-..|-...|-+ ++||+++|+++- -..+-.|+|.++.
T Consensus 391 vI~~ck~nGafdPttmGsVpNVGLMA-qkAeEYGSHdKTF~i~~dGv--~~vv~~~G~VLleh~Ve~gDiwR~cq 462 (744)
T COG2838 391 VIDFCKTNGAFDPTTMGTVPNVGLMA-QKAEEYGSHDKTFEIEADGV--VRVVDANGKVLLEHDVEAGDIWRMCQ 462 (744)
T ss_pred HHHHHHhcCCcCcccccCCCchHHHH-HHHHHhCCCCceEEecCCce--EEEEecCCcEeeecccccccHHHHHh
Confidence 66788888742222447777777633 11112343333333334443 578899999886 3344568887764
No 79
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=21.45 E-value=1.5e+02 Score=25.08 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=32.6
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEEE-EeCCCC
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRV-RSGGHD 90 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~-~g~Gh~ 90 (518)
+|.. ...+..|+...+++++.++.+.|.+.|++..+ +=.|+.
T Consensus 43 ~W~~--~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T cd02430 43 AWER--EGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGRT 85 (115)
T ss_pred HHHh--cCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 4653 23688888999999999999999999998644 445553
No 80
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.63 E-value=1.7e+02 Score=24.53 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=28.0
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCC
Q 042207 58 VIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDY 91 (518)
Q Consensus 58 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g~Gh~~ 91 (518)
++=++....|+.++++.|+++|+|+......++-
T Consensus 53 ~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 53 AISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3345667899999999999999999999887653
No 81
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=20.60 E-value=1.9e+02 Score=24.44 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=33.2
Q ss_pred ccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCeEE-EEeCCCC
Q 042207 47 RFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVR-VRSGGHD 90 (518)
Q Consensus 47 ~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~-~~g~Gh~ 90 (518)
+|-. ...+..++...+++|+.++.+.|++.|++.. ++=.|+.
T Consensus 43 ~W~~--~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T TIGR00283 43 KWLD--EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHT 85 (115)
T ss_pred HHHH--cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4643 3568899999999999999999999999864 4446654
No 82
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.47 E-value=99 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEE--eCCCC
Q 042207 62 PLQVSHIQSVIFCSQWHGMQVRVR--SGGHD 90 (518)
Q Consensus 62 p~~~~dv~~~v~~a~~~~~~~~~~--g~Gh~ 90 (518)
+=|.+||.+++++|++.|+.|.+- .=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 359999999999999999999763 34554
No 83
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=20.19 E-value=67 Score=34.99 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCCcCC
Q 042207 484 FDRLVVVKTMVDPHNFFRNE 503 (518)
Q Consensus 484 ~~RL~~IK~kYDP~~vF~~~ 503 (518)
+.+-.+|.+++||+|+|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 67789999999999999864
No 84
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.05 E-value=1e+02 Score=30.98 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEE--eCCCC
Q 042207 63 LQVSHIQSVIFCSQWHGMQVRVR--SGGHD 90 (518)
Q Consensus 63 ~~~~dv~~~v~~a~~~~~~~~~~--g~Gh~ 90 (518)
=|.+|++++|++|++.|+.|.+- .=||+
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58999999999999999988653 34554
Done!