BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042210
(230 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 101/153 (66%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQIHSQTIK G + KP + + E GD+ Y ++F I +P+VF WNTM+
Sbjct: 1 MDQLKQIHSQTIKTGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTML 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR---- 113
KGYSRIDS K GV MYLD+LK+DV D YT+PFL KGF +DIA K C V++
Sbjct: 61 KGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLG 120
Query: 114 --VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFVQNALI+ Y LCG DMARGIF MS + D
Sbjct: 121 SNVFVQNALINMYSLCGLTDMARGIFDMSYKTD 153
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L K F ++ + W MI GY +++ K ++++ ++ S+V+ D +T +
Sbjct: 269 GQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSIL 328
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G+LE K+ + +V NALI Y CG V+ AR IF
Sbjct: 329 TACAQ--LGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIF 379
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
K++H +K GL + Q + +Y L + +F + V WN MI Y+
Sbjct: 108 KELHCHVVKYGLGSNVFV--QNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYN 165
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
RI + ++ ++ K V + T + ++ + + + +
Sbjct: 166 RIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLI 225
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V+NALI Y CGE+ +A GIF
Sbjct: 226 VENALIDMYAACGEMSVALGIF 247
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 99/153 (64%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+ LKQIHS+TIK G++ P + + E GD+ Y ++F I +PSVF WN M
Sbjct: 27 MYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMF 86
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL--EKSCIVMR---- 113
KGYSRI K GV +YL++L+ +V+ D YT+PFLFKGFTR +A L E C V++
Sbjct: 87 KGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLD 146
Query: 114 --VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VF NALI+ Y LCG +DMARGIF MSC+ D
Sbjct: 147 SNVFAHNALINMYSLCGLIDMARGIFDMSCKSD 179
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
K F K+ + W MI GY R++ +K ++++ ++ S ++ D +T + +
Sbjct: 218 KYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQ-- 275
Query: 102 AGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G+LE K+ + FV NALI Y CG V+MA IF
Sbjct: 276 LGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIF 321
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QL+Q+H Q IK GL P + + +E GD +Y ++F +I +P++F+WNTMI
Sbjct: 52 MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 111
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+GYSR+D + GV +YL++L+ V+ D YTFPFLFKGFTRDIA G + K +
Sbjct: 112 RGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ 171
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y LCG++D ARG+F
Sbjct: 172 YNVFVHTALVQMYLLCGQLDTARGVF 197
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ F K+ + W MI GY R + K + ++ ++ ++V+ D +T +
Sbjct: 320 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 379
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I ++++ I +FV+NALI Y CG+VD A IF
Sbjct: 380 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIF 430
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKP--HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+Q+H +K GL H YLL G L VF + V WN +I Y
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLC---GQLDTARGVFDVCPKADVITWNMIISAY 215
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DI-----AGSLEKSCIV-MRV 114
+++ + ++L + V T + ++ D+ S K+C V +
Sbjct: 216 NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 275
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
++NA+I Y CGE+D A GIF
Sbjct: 276 VLENAMIDMYADCGEMDSALGIF 298
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QL+Q+H Q IK GL P + + +E GD +Y ++F +I +P++F+WNTMI
Sbjct: 31 MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 90
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+GYSR+D + GV +YL++L+ V+ D YTFPFLFKGFTRDIA G + K +
Sbjct: 91 RGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ 150
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y LCG++D ARG+F
Sbjct: 151 YNVFVHTALVQMYLLCGQLDTARGVF 176
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ F K+ + W MI GY R + K + ++ ++ ++V+ D +T +
Sbjct: 299 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 358
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I ++++ I +FV+NALI Y CG+VD A IF
Sbjct: 359 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIF 409
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKP--HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+Q+H +K GL H YLL G L VF + V WN +I Y
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLC---GQLDTARGVFDVCPKADVITWNMIISAY 194
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DI-----AGSLEKSCIV-MRV 114
+++ + ++L + V T + ++ D+ S K+C V +
Sbjct: 195 NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 254
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
++NA+I Y CGE+D A GIF
Sbjct: 255 VLENAMIDMYADCGEMDSALGIF 277
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 94/149 (63%), Gaps = 9/149 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+QLKQIHS TIK+GL + P K+ + +E G + Y +VF I QP++F+WNTMI
Sbjct: 20 MYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMI 79
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
KGYSRI+ +NGV MYL +L S+++ D +TFPFL KGFTR++A K + V
Sbjct: 80 KGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFD 139
Query: 115 ---FVQNALISTYCLCGEVDMARGIFYMS 140
FVQ A I + LC VD+AR +F M
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMG 168
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--R 99
KVF V WN M+ GY+R+ K ++++++ K V ++ T + + +
Sbjct: 163 KVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLK 222
Query: 100 DIAGS------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
D+ G + + + ++N LI + CGE+D A+ +F
Sbjct: 223 DLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVF 266
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + K F +I + W MI GY R++ + ++ ++ S+V+ D +T +
Sbjct: 288 GQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G+LE K+ I FV NALI Y CG V A+ +F
Sbjct: 348 TACAH--LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVF 398
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 11/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+QLKQIHS TIK+GL + P + + +E G++ Y +VF I PS+F+WNTMI
Sbjct: 20 MYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMI 79
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
KGYS+I +NGV MYL +L S+++ D +TFPF KGFTRD+A K + V
Sbjct: 80 KGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFD 139
Query: 115 ---FVQNALISTYCLCGEVDMARGIFYM--SCE 142
FVQ A I + LCG VD+A +F M +CE
Sbjct: 140 SNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACE 172
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ VF + V W MI GY R++ + ++ ++ S+V+ D +T +
Sbjct: 230 GEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSIL 289
Query: 95 KGFTRDIAGSLE-----KSCIVMR-----VFVQNALISTYCLCGEVDMARGIF 137
+ G+LE K+CI FV NAL+ Y CG V A+ +F
Sbjct: 290 --IACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVF 340
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQIHSQTI GL++ P P Q + +E GD++Y VF + P+ F+WN MI
Sbjct: 32 MAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMI 91
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
KGYSR+ + V MY ++L+ V D YT+PFL K FTRD A + K
Sbjct: 92 KGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFS 151
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFVQNALI Y L GEV +ARG+F S + D
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 44 FRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG------- 96
F K+ + W MI GY +++ K + ++ ++ ++++ D +T +
Sbjct: 247 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 306
Query: 97 -FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I ++K+ I + FV NALI Y CG V+ A IF
Sbjct: 307 ELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIF 348
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQIHSQTI GL++ P P Q + +E GD++Y VF + P+ F+WN MI
Sbjct: 32 MAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMI 91
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
KGYSR+ + V MY ++L+ V D YT+PFL K FTRD A + K
Sbjct: 92 KGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFS 151
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFVQNALI Y L GEV +ARG+F S + D
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H +KLG + Q + LY G++ VF + ++ V WN MI GY+
Sbjct: 139 RELHDHIVKLGFSSNVFV--QNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYN 196
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRV----F 115
R + ++ ++ + V + T + ++ ++ + + +++
Sbjct: 197 RSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRV 256
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++NALI Y CG++D A GIF
Sbjct: 257 LENALIDMYAACGDMDTALGIF 278
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 44 FRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG------- 96
F K+ + W MI GY +++ K + ++ ++ ++++ D +T +
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 368
Query: 97 -FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I ++K+ I + FV NALI Y CG V+ A IF
Sbjct: 369 ELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIF 410
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 10/149 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+++ QIHSQTIK GL + K + E GD+ Y KVF +I QPSVF+WNTMI
Sbjct: 48 MYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMI 107
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
KGYSRI+ ++GV +Y +L +++ D +TFPFL KGFT+D+A K + V
Sbjct: 108 KGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFL 167
Query: 115 ----FVQNALISTYCLCGEVDMARGIFYM 139
FVQ I + LCG V+ AR IF M
Sbjct: 168 DSNLFVQKGFIHLFSLCGLVNYARKIFDM 196
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
K F ++ + W MI GY R++ K + ++ D+ S+V+ D +T +
Sbjct: 327 KYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAH-- 384
Query: 102 AGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G+LE K+ I F+ NALI Y CG V+ A+ IF
Sbjct: 385 LGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIF 430
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPF 92
G + Y K+F V WN ++ GY+R ++ +++++ K V ++ T
Sbjct: 185 GLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVL 244
Query: 93 LFKGFTR--DIAGS-------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++ D+ G +++ + + ++NALI + CGE+D ARG+F
Sbjct: 245 MLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVF 298
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q KQ+HSQ+I G+ P K+ G + Y K+F KI +P V +WN MIKG
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD---IAGSLEKSCIVMR----- 113
+S++D GV +YL++LK V D++TFPFL G RD +A + C V++
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 114 -VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++VQNAL+ Y LCG +DMARG+F C++D
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H +K GL + + Q + +Y G + VF + + VF WN MI GY+
Sbjct: 155 KKLHCHVVKFGLGSNLYV--QNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----RDIAGSLEKSCIVMR----VF 115
R+ ++ + + +++ ++ V + T + + +D+ + + + +
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++NAL++ Y CGE+D+A IF
Sbjct: 273 LENALVNAYAACGEMDIAVRIF 294
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q KQ+HSQ+I G+ P K+ G + Y K+F KI +P V +WN MIKG
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD---IAGSLEKSCIVMR----- 113
+S++D GV +YL++LK V D++TFPFL G RD +A + C V++
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 114 -VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++VQNAL+ Y LCG +DMARG+F C++D
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H +K GL + + Q + +Y G + VF + + VF WN MI GY+
Sbjct: 155 KKLHCHVVKFGLGSNLYV--QNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----RDIAGSLEKSCIVMR----VF 115
R+ ++ + + +++ ++ V + T + + +D+ + + + +
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++NAL++ Y CGE+D+A IF
Sbjct: 273 LENALVNAYAACGEMDIAVRIF 294
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNT 57
M QLKQI +Q IK ++T+P T++L L GDL Y +VF IT P+ F+WN
Sbjct: 1 MKQLKQIQAQMIKTAIITEPKLA--TKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNA 58
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--GSLEKSCIVMR-- 113
+I+ YS D + L Y +L S V ++YTFPFL + +A +L+ +V++
Sbjct: 59 IIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLG 118
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
VF NAL+ Y LCGE+ AR +F
Sbjct: 119 FGSDVFALNALLHVYALCGEIHCARQLF 146
>gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
Length = 1203
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + +Q H+Q +K G + P C L G + Y C +FR+I QP F +NTMI
Sbjct: 905 MEEFRQAHAQILKWGFFSNPFCASNLVATCALSHWGSMDYACSIFRQIDQPGSFEYNTMI 964
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMR---- 113
KGY +N +L+Y ++L+ +V+ DN+T+P L K + R I S++ + +
Sbjct: 965 KGYVSDFKMENALLLYYEMLEKEVQSDNFTYPALIKACAWLRAIDESMQIHGHIFKLGFE 1024
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
++VQN+LI+ Y CG+++++ +F
Sbjct: 1025 EDLYVQNSLINMYGKCGKIELSCDVF 1050
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + KQ+H+Q +K C L + G + Y C +FR+I QP F +NTMI
Sbjct: 1 MEEFKQVHAQVLKW---ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+GY + + +N + +Y ++L+ V DN+T+P LFK I G + K +
Sbjct: 58 RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+FVQN+LI+ Y CG+++++ +F
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVF 143
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + KQ+H+ +KLGL C L G ++Y C +FR+I +P F +NTMI
Sbjct: 43 MEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMI 102
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC 109
+G + + +L+Y+++L+ + DN+T+PF+ K + + G+L+ K+
Sbjct: 103 RGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACS--LLGALKEGVQIHAHVFKAG 160
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ VFVQN LI+ Y CG ++ A +F
Sbjct: 161 LEGDVFVQNGLINMYGKCGAIEHASVVF 188
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + KQ+H+ +KLGL C L G ++Y C +F +I +P F +NTMI
Sbjct: 44 MEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMI 103
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+G + +L+Y+++L+ + DN+T+PF+ K + +A + K+ +
Sbjct: 104 RGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLE 163
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ VFVQN LIS Y CG ++ A +F
Sbjct: 164 VDVFVQNGLISMYGKCGAIEHAGVVF 189
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 2 HQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
H+LKQIH+ +I+ G+ L P K + ++ + Y VF I P+VF WNT+I+
Sbjct: 32 HKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIR 91
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMR---- 113
GY+ D+ L Y ++ S V D +T+PFL K ++ + G S +
Sbjct: 92 GYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFES 151
Query: 114 -VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFVQN+L+ Y CG+ + A +F + E D
Sbjct: 152 LVFVQNSLLHIYAACGDTESAYKVFELMKERD 183
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS TI+ G + Q L +Y GD + KVF + + + WN+MI G++
Sbjct: 138 EAIHSVTIRNGFESLVFV--QNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFA 195
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ ++ ++ V D +T L R + L K +
Sbjct: 196 LNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSH 255
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVD---DDLHELFPEYLVQM 171
V N+L+ Y CG + A+ +F MS + LI AV+ ++ ELF E Q
Sbjct: 256 VTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQG 315
Query: 172 LALPD-TFMG 180
L + TF+G
Sbjct: 316 LVPSEITFVG 325
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + K++H+ +KLGL C L G ++Y C +FR+I +P F +NTMI
Sbjct: 44 MEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMI 103
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+G + +L+Y+++L+ + DN+T+PF+ K + +A + + +
Sbjct: 104 RGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLE 163
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ VFVQN LIS Y CG ++ A +F
Sbjct: 164 VDVFVQNGLISMYGKCGAIEHAGVVF 189
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ + KQ+H Q +K GL C L + + Y C +F+++ +P+ F +NTMI
Sbjct: 45 LEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMI 104
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+GY + +N + +Y D+L+ +V DN+T+P + K R I G + K +
Sbjct: 105 RGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLE 164
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V+VQN+LI+ Y C +++M+ IF
Sbjct: 165 DDVYVQNSLINMYGKCRDIEMSCAIF 190
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSR 64
QIH KLGL + Q + +Y K D++ C +FR++ Q SV W+ +I ++
Sbjct: 153 QIHGHVFKLGLEDDVYV--QNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHAS 210
Query: 65 IDSHKNGVLMYLDLLKSDV-RRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ D+ + R + + T R GSL K+ + V
Sbjct: 211 LAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVA 270
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +L+ Y CG + +F
Sbjct: 271 VMTSLMDMYVKCGSLQKGLCLF 292
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QI S I G+ P + Y L D + +F +I +P+VF WN M + Y
Sbjct: 43 SFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAY 102
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
SR + +Y +L++ DNY+FPF+ K R+I S K + + V
Sbjct: 103 SRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDV 162
Query: 115 FVQNALISTYCLCGEVDMARGIFYM 139
FVQNALIS + CG V+ AR +F M
Sbjct: 163 FVQNALISAFSSCGAVEAARAVFDM 187
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G ++ KVF +I + W +MI GY++ D K + ++ ++ D T
Sbjct: 275 MYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAAT 334
Query: 90 FPFLFKGF--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY--- 138
+ R I E++ I M + +NALI Y CG++ A IF+
Sbjct: 335 IACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLT 394
Query: 139 ---------------MSCEDDDGLHELIRIKAVDD 158
M+ E D LH +++ + D
Sbjct: 395 QPDIFSWSAVISGLAMNGESDKALHLFSQMEMISD 429
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQ--PSVFLWNT 57
+H+ ++IHS T+KLG+ Q + + G ++ VF + V WN+
Sbjct: 143 LHKGREIHSSTLKLGVHLDVFV--QNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNS 200
Query: 58 MIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK--------GFTRDIAGSLEKS 108
MI GY + ++ + ++ +LL + D T + I G S
Sbjct: 201 MISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGS 260
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
V+ VFV ++LI Y CG+++ AR +F
Sbjct: 261 GFVLDVFVGSSLIDMYSKCGQIEDARKVF 289
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M LK+IHSQ IK GL + + GD+ Y VF +I P++F WNT+I+
Sbjct: 35 MKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIR 94
Query: 61 GYSRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFLFKGFTR-DIA-------GSLEKSCIV 111
G+SR +N + +Y+D LL S V+ T+P +FK F + D+A G + K +
Sbjct: 95 GFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLE 154
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
F++N ++ Y CG AR +F
Sbjct: 155 NDSFIRNTILFMYVNCGFTSEARKVF 180
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ QLKQ H+ I+ G+ + P+ K L L+Y KVF +I QP+ F WNT+I
Sbjct: 44 LRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLI 103
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVR--RDNYTFPFLFKG--------FTRDIAGSLEKSC 109
+ Y+ + +LD++ S+ + + YTFPFL K + + G KS
Sbjct: 104 RAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSA 163
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ VFV N+LI Y CG++D A +F E D
Sbjct: 164 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL CKVF I + V WN+MI G+ + S + ++ + DV+ + T +
Sbjct: 182 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
F R + +E++ + + + + NA++ Y CG ++ A+ +F E D+
Sbjct: 242 SACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 300
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKG---- 96
+V + + + WN +I Y + +L++ +L L+ +++ + T
Sbjct: 321 EVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQV 380
Query: 97 ----FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R I ++K+ I M +V +ALI Y CG+++ AR +F
Sbjct: 381 GALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
LKQIH+ I G + ++ + + G + Y +VF +IT+P +F+WNTM++G
Sbjct: 29 LKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGS 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
S+ + VL+Y + V+ D +TF FL KG TR + G + K +
Sbjct: 89 SQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNS 148
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
FV+N LI + CG++ +AR IFY
Sbjct: 149 FVRNTLIYFHSNCGDLVIARSIFY 172
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L+QIH Q +K GL L + K + G L Y VF +I +P+ F+WNTMI
Sbjct: 31 MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIV 111
+GYS + +L+Y +L V + YTFPFL K T+ I + K
Sbjct: 91 RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
++ N+L++ Y G++ AR +F
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLF 176
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +K++H+ + GL + + L + DL KVF++I P+ FLWNT+++
Sbjct: 854 MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLR 913
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
G ++ D+ K+ ++ Y + ++ DN TFPF+ K + A + K ++
Sbjct: 914 GLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLL 973
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI Y CG + AR +F
Sbjct: 974 DIFVSNSLIYLYAACGALACARSVF 998
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+Q+H+ IKLG L YL G L VF ++ V WN++I GYS+
Sbjct: 960 EQMHNHVIKLGFLLDIFVSNSLIYLYA-ACGALACARSVFNEMLVKDVVSWNSLIGGYSQ 1018
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL--------EKSCIVMRVFV 116
+ K + ++ + +V+ D T + T S+ E + I + V++
Sbjct: 1019 HNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYL 1078
Query: 117 QNALISTYCLCGEVDMARGIF 137
N LI YC G++ A +F
Sbjct: 1079 GNTLIDYYCRIGQLQSAEKVF 1099
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L+QIH Q +K GL L + K + G L Y VF +I +P+ F+WNTMI
Sbjct: 31 MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIV 111
+GYS + +L+Y +L V + YTFPFL K T+ I + K
Sbjct: 91 RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
++ N+L++ Y G++ AR +F
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLF 176
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L+QIH Q +K GL L + K + G L Y VF +I +P+ F+WNTMI
Sbjct: 31 MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIV 111
+GYS + +L+Y +L V + YTFPFL K T+ I + K
Sbjct: 91 RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFG 150
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
++ N+L++ Y G++ AR +F
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLF 176
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + KQ H++ +K GL C L + G + Y C +FR++ +P F +NTM+
Sbjct: 1 MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G+ + + + ++ Y ++ + V+ DN+T+P L K R + + K +
Sbjct: 61 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN+LIS Y CGE+ + +F
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVF 146
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 3 QLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+ +QIH+ +I+ G+ LT P K + LL + Y ++F +I P++F WNTMI+G
Sbjct: 55 KFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRG 114
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR------ 113
Y+ ++ + +Y + S + D +T+PFL K + D+ + I +R
Sbjct: 115 YAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL 174
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFVQN L+ Y CG + A +F + E +
Sbjct: 175 VFVQNTLVHMYAACGHAESAHKLFELMAERN 205
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +K++H+ + GL + + ++ DL + KVF +I P+ FLWNT+++
Sbjct: 324 MEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLR 383
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
G ++ D+ K+ ++ Y + ++ DN TFPF+ K + A + K ++
Sbjct: 384 GLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLL 443
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI Y CG++ AR IF
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIF 468
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+Q+HS IKLG L +L GDL +F ++ V WN++I GYS+
Sbjct: 430 EQMHSHVIKLGFLLDIFVSNSLIHLYA-ACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQ 488
Query: 65 IDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTR--DIAGS------LEKSCIVMRVF 115
+ K VL +L+++ +V+ D T + T D + + +E++ I + V+
Sbjct: 489 RNRFKE-VLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVY 547
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ N LI YC G++ A +F
Sbjct: 548 LGNTLIDYYCRIGQLQSAEKVF 569
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG---DLKYECKVFRKITQPSVFLWNT 57
M LKQ H+Q GL + K L Y C+VF +I P+V ++NT
Sbjct: 18 MKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYNT 77
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSC 109
+IK + + K+ + +++ +L+S+++ DNYT P++ K F + I G K
Sbjct: 78 LIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLG 137
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+V ++V N+L++ YC+ G+V AR +F
Sbjct: 138 LVFDIYVGNSLMAMYCVFGDVVAARYVF 165
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
T L +Y K G+L+ ++F + V WN MI G + K + ++ D+ K V
Sbjct: 278 STSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGV 337
Query: 84 RRDNYTFPFLFKG 96
+ D+ TF +F
Sbjct: 338 KPDDITFIAVFTA 350
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 87/182 (47%), Gaps = 13/182 (7%)
Query: 2 HQLKQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
LKQIHSQ IK GL T+ K + + G+L Y +F I QP+ F+WNTMI+
Sbjct: 46 QNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIR 105
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVM 112
G S S + Y+ +L V ++YTFPFL K G T++ I G + K +
Sbjct: 106 GNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLES 165
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSC-EDDDGLHELI---RIKAVDDDLHELFPEYL 168
FV +LI+ Y GE+ A +F S D LI ++ DD LF E
Sbjct: 166 DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIP 225
Query: 169 VQ 170
V+
Sbjct: 226 VR 227
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL +F I + + WN MI GYS ++S+K + ++ + +S+V ++ T
Sbjct: 308 MYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367
Query: 90 FPFLFKG--------FTRDIAGSLEKSCI-VMRVFVQNALISTYCLCGEVDMARGIF 137
F + + I ++K + + + +LI Y CG ++ A+ +F
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 48/183 (26%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRK----------------- 46
KQIH +KLGL + P T + +Y + G+L Y VF K
Sbjct: 152 KQIHGHVLKLGLESDPFV--HTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYT 209
Query: 47 --------------ITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
I WN MI GY++ + + + ++ +++V + T
Sbjct: 210 LRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVT 269
Query: 93 LFKGFTRDIAGSLEKSCIVMRVFVQ-----------NALISTYCLCGEVDMARGIFYMSC 141
+ + +GSLE V R +++ NALI Y CG++D AR +F C
Sbjct: 270 VLSACAQ--SGSLELGNWV-RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGIC 326
Query: 142 EDD 144
E D
Sbjct: 327 EKD 329
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 87/182 (47%), Gaps = 13/182 (7%)
Query: 2 HQLKQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
LKQIHSQ IK GL T+ K + + G+L Y +F I QP+ F+WNTMI+
Sbjct: 46 QNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIR 105
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVM 112
G S S + Y+ +L V ++YTFPFL K G T++ I G + K +
Sbjct: 106 GNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLES 165
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSC-EDDDGLHELI---RIKAVDDDLHELFPEYL 168
FV +LI+ Y GE+ A +F S D LI ++ DD LF E
Sbjct: 166 DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIP 225
Query: 169 VQ 170
V+
Sbjct: 226 VR 227
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL +F I + + WN MI GYS ++S+K + ++ + +S+V ++ T
Sbjct: 308 MYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367
Query: 90 FPFLFKG--------FTRDIAGSLEKSCI-VMRVFVQNALISTYCLCGEVDMARGIF 137
F + + I ++K + + + +LI Y CG ++ A+ +F
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 48/183 (26%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRK----------------- 46
KQIH +KLGL + P T + +Y + G+L Y VF K
Sbjct: 152 KQIHGHVLKLGLESDPFV--HTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYT 209
Query: 47 --------------ITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
I WN MI GY++ + + + ++ +++V + T
Sbjct: 210 LRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVT 269
Query: 93 LFKGFTRDIAGSLEKSCIVMRVFVQ-----------NALISTYCLCGEVDMARGIFYMSC 141
+ + +GSLE V R +++ NALI Y CG++D AR +F C
Sbjct: 270 VLSACAQ--SGSLELGNWV-RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGIC 326
Query: 142 EDD 144
E D
Sbjct: 327 EKD 329
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + KQ H++ +KLGL C L + G + Y C +FR++ + F +NTM+
Sbjct: 44 MEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMM 103
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G+ + + + ++ Y ++ + V+ DN+T+P L K R + + K +
Sbjct: 104 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 163
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN+LIS Y CGE+ + +F
Sbjct: 164 NDVFVQNSLISMYGKCGEIGVCCAVF 189
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q+ QIH+Q I L++ + ++ + ++ Y VF +I QP+ F+ NTM+K Y
Sbjct: 26 QILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCY 85
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIVMR-----V 114
+ + + + Y ++ K + DNYT+PF+ K + G L + V R V
Sbjct: 86 TESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDV 145
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FV N LIS YC CGE AR +F E D
Sbjct: 146 FVVNGLISMYCRCGETGWARAVFDGFSEKD 175
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ ++F K+ Q +V W+ MI GY+ K + ++ +L ++ D +
Sbjct: 253 GEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAV 312
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++++ +++ + VQ AL+ Y CG D AR IF
Sbjct: 313 SACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIF 363
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 2 HQLKQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++L+QIH+ +I+ G+L P K Y ++ + Y +F I P++F WNTMI+
Sbjct: 54 YKLQQIHAFSIRHGVLPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQNPNIFTWNTMIR 113
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR----- 113
G++ ++ K + +Y L + + D +T+PFL K ++ + + + I +R
Sbjct: 114 GHAESENPKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRNGFES 173
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
VFVQN+L+ Y CG+ + A +F
Sbjct: 174 LVFVQNSLMHMYAACGQYESAHKLF 198
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + KQ+H+ +K G+ C L + G + Y C +F +I +PS F +NTMI
Sbjct: 11 MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G + +L+Y+D+++ V D +T+PF+ K + + G + K +
Sbjct: 71 RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V VQN+LI+ Y CGE+ A +F
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVF 156
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLT-KPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LK+IH+ I LGL +P K + L + G++ Y C V + P++F WNT+I
Sbjct: 27 MLELKKIHALVITLGLSQDEPFVSKILSFSALSDSGNINYSCWVLFSLLNPTIFNWNTVI 86
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+GYS+ + + +++ +LK V D T+PFL K R I + K
Sbjct: 87 RGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHIIKHGFE 146
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
F+ N+L+ Y G++ AR +F
Sbjct: 147 SDRFISNSLVHMYASFGDISCARYVF 172
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
LKQIH+ I G + ++ Y + G + Y ++F IT+P F+WNTMI+G
Sbjct: 29 LKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGS 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
++ S N + +Y + VR D +TFPF+ K TR + G + +
Sbjct: 89 AQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNT 148
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FV+N LI + CG++ +AR +F S + D
Sbjct: 149 FVRNTLIYFHANCGDLAVARALFDGSAKRD 178
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++G+++ K+F ++ + V WN MI GY S++ + M+ ++ D T
Sbjct: 222 KRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLS 281
Query: 93 LFKGFTRDI----AGSLEKSCIV------MRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
L T D+ AG CI + V + NALI Y CG + A +F E
Sbjct: 282 LLSACT-DLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMRE 340
Query: 143 DD 144
D
Sbjct: 341 KD 342
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK +H+Q I GL + K + + + GDL+Y ++F +I QP+ F++N++I
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+GYS D + VL++ ++ S + + +T PF+ K A G K I
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQNALI+ Y +CG + AR +F
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLF 146
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q+ QIH+Q I L++ + ++ + ++ Y VF +I QP+ F+ NTM+K Y
Sbjct: 26 QILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCY 85
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIVMR-----V 114
+ + + + Y ++ + + DNYT+PF+ K + G L + V R V
Sbjct: 86 TESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDV 145
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FV N LIS YC CGE AR +F E D
Sbjct: 146 FVVNGLISMYCRCGETGWARAVFDGFSEKD 175
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ ++F K+ Q +V W+ MI GY++ K + ++ +L ++ D +
Sbjct: 253 GEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAV 312
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++++ +++ + VQ AL+ Y CG D AR IF
Sbjct: 313 SACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIF 363
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ QLKQ H I+ G + P+ + + L L+Y KVF +I +P+ F WNT+I
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCI 110
+ Y+ + +LD++ +S + YTFPFL K + + G KS +
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFV N+LI Y CG++D A +F E D
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL CKVF I + V WN+MI G+ + S + ++ + DV+ + T +
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
F R + +E++ + + + + NA++ Y CG ++ A+ +F E D+
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS K G+ H + + +Y K GDL+ +VF + + VF+W+ MI G +
Sbjct: 385 RWIHSYIKKHGIRMNFHV--TSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
V M+ + +++V+ + TF +F
Sbjct: 443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M ++K+IH+Q I GL++ + + + E +L Y K+ +VF WN I
Sbjct: 67 MAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAI 126
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFK---GFT-----RDIAGSLEKSCI 110
+GY ++ N VL+Y ++L K DNYT+P LFK GF+ +I G + +
Sbjct: 127 RGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGF 186
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NA+I CGE+ AR +F SC D
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRD 220
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K I + I +TK T ++ Y K G L+ ++F ++ + V LWN +I G+
Sbjct: 305 KNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFV 364
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
+ K + ++ ++ S V D T ++ G+L+ K + M
Sbjct: 365 QAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ--LGALDVGIWMHHYVDKHNLTMN 422
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V + AL+ Y CG + A +F
Sbjct: 423 VALGTALVDMYAKCGNIKKAIQVF 446
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ----TRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
M QLKQ+H+QTI+ T H P +R L DL+Y +VF +I P+ F+WN
Sbjct: 39 MSQLKQLHAQTIRT---TSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWN 95
Query: 57 TMIKGYSR-IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLE 106
+I+ +R D ++ + +Y +L + V +D +TFPF+ K I +
Sbjct: 96 ALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQIL 155
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K V++ N+L+ Y C +D A+G+F
Sbjct: 156 KLGFDSBVYINNSLVHFYATCDRLDFAKGVF 186
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK +H+Q I GL + K + + + GDL+Y ++F +I QP+ F++N++I
Sbjct: 127 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 186
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+GYS D + VL++ ++ S + + +T PF+ K A G K I
Sbjct: 187 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 246
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQNALI+ Y +CG + AR +F
Sbjct: 247 SLVFVQNALIAVYVVCGLIHCARKLF 272
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYL---LLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
LKQ+H+ ++ GL P P T+ L L Y CKVF +I +P+++ WNT+I
Sbjct: 45 HLKQLHAHMLRTGLFFDP--PSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLI 102
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT--------RDIAGSLEKSCI 110
+ ++ G+L+++ +L R N YTFPF+ K T + I G + K+
Sbjct: 103 RAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF 162
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+F+ N+LI Y G++D A +F E D
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKD 196
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL VF KI + + WN+MI G+ + S + + ++ + + R + T +
Sbjct: 180 GDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVL 239
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F R +E++ I + + + NA++ Y CG ++ AR +F
Sbjct: 240 SACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLF 290
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK +H+Q I GL + K + + + GDL+Y ++F +I QP+ F++N++I
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+GYS D + VL++ ++ S + + +T PF+ K A G K I
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQNALI+ Y +CG + AR +F
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLF 146
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H IKLG+ + Q + +Y G + K+F IT ++ WN+MI GY+ +
Sbjct: 110 VHGLAIKLGIGSLVFV--QNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHM 167
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQ 117
+ K L++ + + + D +TF L R + +E + + + + V+
Sbjct: 168 GNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVR 227
Query: 118 NALISTYCLCGEVDMARGIF 137
NAL+ Y CG + A+ IF
Sbjct: 228 NALVDMYAKCGNLHSAQAIF 247
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
QIH+QTI GL + + + + LL K L + +F +I P++F+WNTMI+GYS
Sbjct: 27 QIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYS 86
Query: 64 RIDSHKNGVLMYLDLLKSDVR-RDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
R D+ + +++Y+ ++ + +N+TFPFL R ++ + K +
Sbjct: 87 RSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDL 146
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV+NALI Y + G +++AR +F
Sbjct: 147 FVRNALIHLYSVFGNLNLARTLF 169
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++HS IK G + + + LY G+L +F + + +NTMIKGY+
Sbjct: 132 EVHSHIIKHGFESDLFV--RNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKS--CIVMRV 114
++ ++ + ++ ++ S + D +TF LF + I + K+ I +
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+++A++ Y CG +++A +F
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVF 272
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ K+F + + V W MI GYS+ + ++ ++ ++ D T +
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354
Query: 95 KGFTR----DIAGSLEKSCIVMRVFVQNALIST-----YCLCGEVDMARGIF 137
R D+ L I VF QN +++ Y CG +D A IF
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 406
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 105/236 (44%), Gaps = 22/236 (9%)
Query: 5 KQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ H+ ++ LL P K +L L GDL Y K+F ++ P F+ NTMI+GY+
Sbjct: 28 KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR------VF 115
R + V +Y +++ V DNYT+PF+ R A L + C V++ +F
Sbjct: 88 RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLAL- 174
V NALI Y CG A +F S D ++ ++ L E + L +M L
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207
Query: 175 ---PDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNSI 227
PD EV S P ++GNLE G E D+ ++N+I
Sbjct: 208 NLRPD-------EVTMVSLVP--ACAQLGNLERGKFLHSYSKELGLDENLRVNNAI 254
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
L QIH+Q + GL+ T+++ + G++ Y KVF + +PSVFLWN +I+G
Sbjct: 86 HLNQIHAQLVVSGLVESGFLV--TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRG 143
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
YS + + + MY + S V D +T P + K + + + G + +
Sbjct: 144 YSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESD 203
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
VFVQN L++ Y CG V+ AR +F
Sbjct: 204 VFVQNGLVALYAKCGRVEQARIVF 227
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q K IH +K+GL +P +Y K G + F ++ P+V +WN MI
Sbjct: 286 LEQGKSIHGCVVKMGLEFEPDL--LISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMI 343
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY++ V ++ +++ ++R D+ T + + + K+
Sbjct: 344 SGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYR 403
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFV ALI + CG VD+AR +F + + D
Sbjct: 404 NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKD 436
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H Q +LG + Q + LY K G ++ VF + ++ W +MI GY
Sbjct: 189 KRVHGQIFRLGFESDVFV--QNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYG 246
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ + + +V+ D + + +T + I G + K +
Sbjct: 247 QNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPD 306
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L + Y CG+V +AR F
Sbjct: 307 LLISLTAMYAKCGQVMVARSFF 328
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+LKQ+H+ I GL P K + L GD+ Y +VF +++ P++F WNT+I+G
Sbjct: 29 ELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRG 88
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMR 113
YS + + ++L +L+ V D T+PFL K R + + K+
Sbjct: 89 YSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESD 148
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
F+QN+LI Y CG A+ +F
Sbjct: 149 RFIQNSLIHMYAACGNSMWAQKVF 172
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ LKQIHSQ IK GL T K + ++ GDL Y +F+ I +P+ +WN +I
Sbjct: 37 LKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGKPNQIIWNNII 96
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G S +S + Y+D++ S + YT+PF+ K R I G + K
Sbjct: 97 RGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFD 156
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FV +LI+ Y GE+ AR +F S D
Sbjct: 157 NDAFVHTSLITMYVQNGELGNARLVFERSSMRD 189
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL+ +F I +V WN MI GY+ + +K + ++ +L+S+V ++ T
Sbjct: 300 MYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVT 359
Query: 90 FPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNA----LISTYCLCGEVDMARGIF 137
+ G + I ++K+ M+ NA LI Y CG +++A IF
Sbjct: 360 LLSILPACANLGALGLGKWIHAYIDKN---MKNLANNALWTSLIDMYAKCGNIEVANQIF 416
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 38/174 (21%)
Query: 2 HQLKQIHSQTIKLGLLTKP--HCPKQTRYL---------LLYEK---------------- 34
H+ KQIH Q +KLG H T Y+ L++E+
Sbjct: 141 HEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGY 200
Query: 35 ---GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
G L ++F +I V WN MI GY++ + ++ + ++L+++V + T
Sbjct: 201 ASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLL 260
Query: 92 FLFKGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + ++ +E+ + + V NALI Y CG+++ A +F
Sbjct: 261 SVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLF 314
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--GDLKYECKVFRKITQPSVFLWNTMIKGY 62
KQIH+ TI LGLL+ P+ L G + K+F ++ PS+F WN MI+ Y
Sbjct: 38 KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMY 97
Query: 63 SRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKG---FTRDIAGSLEKSCIVMR----- 113
+ + + +++ +L S R DNYT+PF+ K + G+L + VM
Sbjct: 98 TNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSD 157
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
FVQN+L++ Y CGE+++AR +F
Sbjct: 158 AFVQNSLMAMYMNCGEMEVARRVF 181
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH++T+ G + Q + +Y G+++ +VF + + ++ WNTMI GY +
Sbjct: 145 IHARTVMSGFDSDAFV--QNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKN 202
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
K ++++ ++ + D T + + R + +E + + V
Sbjct: 203 GCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVW 262
Query: 118 NALISTYCLCGEVDMARGIFY 138
N+L+ Y CG +D A+ IFY
Sbjct: 263 NSLLDMYAKCGNMDEAQMIFY 283
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
+T + +Y K ++ +VF K ++ WN +I G + + ++ +L V
Sbjct: 363 ETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAV 422
Query: 84 RRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
++ T L + R++ G L +S + R+ V LI Y CG ++ A
Sbjct: 423 DPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHN 482
Query: 136 IF 137
IF
Sbjct: 483 IF 484
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--GDLKYECKVFRKITQPSVFLWNTMIKGY 62
KQIH+ TI LGLL+ P+ L G + K+F ++ PS+F WN MI+ Y
Sbjct: 38 KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMY 97
Query: 63 SRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKG---FTRDIAGSLEKSCIVMR----- 113
+ + + +++ +L S R DNYT+PF+ K + G+L + VM
Sbjct: 98 TNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSD 157
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
FVQN+L++ Y CGE+++AR +F
Sbjct: 158 AFVQNSLMAMYMNCGEMEVARRVF 181
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH++T+ G + Q + +Y G+++ +VF + + ++ WNTMI GY +
Sbjct: 145 IHARTVMSGFDSDAFV--QNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKN 202
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
K ++++ ++ + D T + + R + +E + + V
Sbjct: 203 GCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVW 262
Query: 118 NALISTYCLCGEVDMARGIFY 138
N+L+ Y CG +D A+ IFY
Sbjct: 263 NSLLDMYAKCGNMDEAQMIFY 283
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
+T + +Y K ++ +VF K ++ WN +I G + + ++ +L V
Sbjct: 363 ETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAV 422
Query: 84 RRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
++ T L + R++ G L +S + R+ V LI Y CG ++ A
Sbjct: 423 DPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHN 482
Query: 136 IF 137
IF
Sbjct: 483 IF 484
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
LKQ+H+ I GL + ++ ++ + G + Y ++F +I+QP +F+WNTMI+G
Sbjct: 28 SLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRG 87
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMR 113
++ V +Y + VR D +TF F+ K T+ I G + KS
Sbjct: 88 SAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSN 147
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCE 142
FV+N LI + CG++ AR +F S +
Sbjct: 148 TFVRNTLIYFHANCGDLATARALFDASAK 176
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ K+F ++ + V WN MI GY +K + M+ + R D+ T +
Sbjct: 224 GEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSIL 283
Query: 95 KGFTR----DIAGSLEKS-----CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+I + +S C + V + NALI Y CG + A +F
Sbjct: 284 SASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVF 335
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 2 HQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ +KQIH+Q IK L P+ PK L +L VF ++ P+V L+N +I+
Sbjct: 36 NHIKQIHAQLIKCHLHQDPYIAPKLIASYSL--TNNLSSAVNVFNQVPDPNVHLYNYLIR 93
Query: 61 GYSRIDSHKNGVLMYLDLLK---SDVRRDNYTFPFLFKG---------FTRDIAGSLEKS 108
YS + N + + LLK V DN+T+PFL KG + + +EK
Sbjct: 94 AYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKL 153
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI YC CG+V+MA +F
Sbjct: 154 GFYWDIFVPNSLIDCYCRCGDVEMAMKVF 182
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
+K +H+ KLG P + Y + GD++ KVF + + V WN+M+ G
Sbjct: 143 VKMVHAHVEKLGFYWDIFVPNSL--IDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGL 200
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALIS 122
+ + +G L D + RD ++ + GFT+ AG ++K+ + + ++S
Sbjct: 201 VK-NGDLDGALKVFDEMP---ERDRVSWNTMLDGFTK--AGEMDKAFKLFERMAERDIVS 254
Query: 123 ------TYCLCGEVDMARGIF 137
Y G++DMAR +F
Sbjct: 255 WSTMVCGYSKNGDMDMARMLF 275
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ KQIH+ IK GL T K + + GD+ Y +F I +P++F+WN+MI
Sbjct: 42 IRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMI 101
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+G S S ++ ++ ++ S V ++YTFPFL K + I + K V
Sbjct: 102 RGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFV 161
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VF+ +LI+ Y GE++ A+ +F
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVF 187
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 44/177 (24%)
Query: 2 HQLKQIHSQTIKLGLLTK-----------PHCPKQTRYLLLYEKGDLKYEC--------- 41
H+ KQIH+ +KLG ++ + L++++ + +
Sbjct: 146 HEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGY 205
Query: 42 ----------KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
++F ++ V WN MI GY+++ K +L++ D+ K++V + T
Sbjct: 206 ALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIV 265
Query: 92 FLFKGFTRDIAGSLEKSCIVMRVFVQ-----------NALISTYCLCGEVDMARGIF 137
+ + A L S MR +++ NALI Y CG++ AR +F
Sbjct: 266 SVLSACAQSNALDLGNS---MRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELF 319
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL+ ++F + + V WN MI GY+ + S+K + ++ ++L S V T
Sbjct: 305 MYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEIT 364
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + I + K+ + + +LI Y CG + AR +F
Sbjct: 365 FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M ++K+IH+Q I GL++ + + + E +L Y K+ + F WN I
Sbjct: 67 MAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAI 126
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFK---GFT-----RDIAGSLEKSCI 110
+GY ++ N VL+Y ++L K DNYT+P LFK GF+ +I G + +
Sbjct: 127 RGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGF 186
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NA+I CGE+ AR +F SC D
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRD 220
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K I + I +TK T ++ Y K G L+ ++F ++ + V LWN +I G+
Sbjct: 305 KNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFV 364
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
+ K + ++ ++ S V D T ++ G+L+ K + M
Sbjct: 365 QAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ--LGALDVGIWMHHYVDKHNLTMN 422
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V + AL+ Y CG + A +F
Sbjct: 423 VALGTALVDMYAKCGNIKKAIQVF 446
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 17/149 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ----TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
QLKQ+H+QTI+ T H P +R L DL+Y +VF +I P+ F+WN +
Sbjct: 41 QLKQLHAQTIRT---TSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNAL 97
Query: 59 IKGYSR-IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKS 108
I+ +R D ++ + +Y +L + V +D +TFPF+ K I + K
Sbjct: 98 IRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKL 157
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
V++ N+L+ Y C +D A+G+F
Sbjct: 158 GFDSDVYINNSLVHFYATCDRLDFAKGVF 186
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 17/149 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ----TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
QLKQ+H+QTI+ T H P +R L DL+Y +VF +I P+ F+WN +
Sbjct: 41 QLKQLHAQTIRT---TSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNAL 97
Query: 59 IKGYSR-IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKS 108
I+ +R D ++ + +Y +L + V +D +TFPF+ K I + K
Sbjct: 98 IRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKL 157
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
V++ N+L+ Y C +D A+G+F
Sbjct: 158 GFDSDVYINNSLVHFYATCDRLDFAKGVF 186
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q +KLG + + + Y D L + VF ++++ S+ WN +I +
Sbjct: 148 EQIHAQILKLGFDSDVYINNSLVHF--YATCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALIST 123
R + ++ ++ K D YT + GSL IV V + +L+
Sbjct: 206 RFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAG--MGSLSLG-IVNDVLLNTSLVDM 261
Query: 124 YCLCGEVDMARGIFY 138
YC CG +++A +F+
Sbjct: 262 YCKCGSLELALQLFH 276
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 19/160 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE----KGDLKYECKVF-RKITQPSVFLW 55
M Q K+ H+Q I GL H P R ++ + GD+ Y + R T P+VFL+
Sbjct: 1 MKQFKEAHTQLIINGL---THPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLF 57
Query: 56 NTMIKGYSRI---DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GS 104
NT I+G+SR S + VL+++ + + +N+TF FLF+G + +A G
Sbjct: 58 NTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGM 117
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K+ M VFV+N++I Y +CG ++ AR +F S E D
Sbjct: 118 VIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELD 157
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G++ +F K+T+ + WN MI GY++ K + ++ ++ D ++ +
Sbjct: 171 NGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSV 230
Query: 94 FKGFTRDIAGSLEKSCIV--------MRV--FVQNALISTYCLCGEVDMARGIFYMSCED 143
++ G+L+ C V +RV + ALI Y CG +D+A F S +
Sbjct: 231 LSACSQ--LGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKR 288
Query: 144 D 144
D
Sbjct: 289 D 289
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
MHQLKQIH+Q I + + + + L E GDL Y ++F +P+ F+WNT+I
Sbjct: 41 MHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLI 100
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+ ++ + +L+Y+D+ + DV +TFPFL K + + + K +
Sbjct: 101 RAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLD 160
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ + V N L+ Y + +V AR +F
Sbjct: 161 LNLHVVNGLVRAYSVSCDVRNARRVF 186
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 2 HQLKQIHSQTIKLG-LLTKPHCPKQTRYLLLYEKGD-----------LKYECKVFRKITQ 49
H+L+ IH+ +I+ G LL P K + ++ L Y VF I
Sbjct: 33 HKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNVFTWVLSYAYNVFTMIHN 92
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLE 106
P+VF WNTM +GY+ D+ + Y ++ S + D +T+PFL K ++ + G
Sbjct: 93 PNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAI 152
Query: 107 KSCIVMR-----VFVQNALISTYCLCGEVDMARGIF 137
S + VFVQN+L+ Y CG+ + A +F
Sbjct: 153 HSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVF 188
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 22/216 (10%)
Query: 3 QLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+ KQ H+ ++ LL P K +L L GDL Y K+F ++ P F+ NTMI+G
Sbjct: 26 KTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRG 85
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR------ 113
Y+R + V +Y +++ V DNYT+PF+ R A L + C V++
Sbjct: 86 YARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLA 173
+FV NALI Y CG A +F S D ++ ++ L E + L +M
Sbjct: 146 LFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTK 205
Query: 174 L----PDTFMGEGLEVIPKSQAPREETPRVGNLEEG 205
L PD EV S P ++GNLE G
Sbjct: 206 LDNLRPD-------EVTMVSLVP--ACAQLGNLERG 232
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
MHQLKQIH+Q I + + + + L E GDL Y ++F +P+ F+WNT+I
Sbjct: 39 MHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLI 98
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+ ++ + +L+Y+D+ + DV +TFPFL K + + + K +
Sbjct: 99 RAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLD 158
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ + V N L+ Y + +V AR +F
Sbjct: 159 LNLHVVNGLVRAYSVSCDVRNARRVF 184
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ QLKQI SQ + GL+ + + + E DL Y + P+ F WN I
Sbjct: 19 ISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAI 78
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
+G+ ++ + V++Y +L+ D + DNYT+P LFK R +I G +
Sbjct: 79 RGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF 138
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NA+I CG++D AR +F SC D
Sbjct: 139 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD 172
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LL GDL K+F K + WN+MI GY R + Y ++ ++ D T
Sbjct: 151 LLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVT 210
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R+ +E++ + + V + NAL+ Y CG ++ AR +F
Sbjct: 211 MIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 266
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G L K+F ++ V WN MI GY + K + ++ ++ ++ D T
Sbjct: 286 QSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 345
Query: 93 LFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ I +EK + + V + ALI Y CG++ A +F
Sbjct: 346 CLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVF 398
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ QLKQI SQ + GL+ + + + E DL Y + P+ F WN I
Sbjct: 63 ISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAI 122
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
+G+ ++ + V++Y +L+ D + DNYT+P LFK R +I G +
Sbjct: 123 RGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF 182
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NA+I CG++D AR +F SC D
Sbjct: 183 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD 216
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G L K+F ++ V WN MI GY + K + ++ ++ ++ D T
Sbjct: 258 QSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 317
Query: 93 LFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ I +EK + + V + ALI Y CG++ A +F
Sbjct: 318 CLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVF 370
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQIH+Q ++ GL P K + L E G L+Y VF +I P+ + N++I
Sbjct: 1 MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS-----LEKSCIVMRV 114
+G + + H+ +L Y +++ + D YTFP LFK G K
Sbjct: 61 RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDT 120
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+ QN L++ Y CG + AR +F
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVF 143
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH + KLG + + Q + +Y G L KVF K+ +V W TMI ++
Sbjct: 105 KQIHCHSTKLGFASDTY--AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162
Query: 64 RIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRV 114
+ D V ++ ++KS +V+ + T + R I +++ V
Sbjct: 163 QWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHV 222
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+ L+ YC CG V +AR +F
Sbjct: 223 VLNTVLMDVYCKCGCVQLARDLF 245
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
+F K + ++F WN MI G+ +++ +L++ ++ ++ D T L T
Sbjct: 244 LFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH--L 301
Query: 103 GSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
G+LE K I + V + AL+ Y CG ++ A +F+ E D
Sbjct: 302 GALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD 353
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
QLKQIH++ + LGL + L++ GD+ + +VF + +P +F WN +I
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITK----LIHASSSFGDITFARQVFDDLPRPQIFPWNAII 91
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+GYSR + ++ +LMY ++ + V D++TFP L K + R + + +
Sbjct: 92 RGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFD 151
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN LI+ Y C + AR +F
Sbjct: 152 ADVFVQNGLIALYAKCRRLGSARTVF 177
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q + IH+ +K+GL +P +Y K G + +F K+ P++ LWN MI
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLN--TMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR------ 113
GY++ + + M+ +++ DVR D + + GSLE++ +
Sbjct: 296 SGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ--VGSLEQARSMYEYVGRSD 353
Query: 114 ----VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VF+ +ALI + CG V+ AR +F + + D
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
QLKQIH++ + LGL + L++ GD+ + +VF + +P +F WN +I
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITK----LIHASSSFGDITFARQVFDDLPRPQIFPWNAII 91
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+GYSR + ++ +LMY ++ + V D++TFP L K + R + + +
Sbjct: 92 RGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFD 151
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN LI+ Y C + AR +F
Sbjct: 152 ADVFVQNGLIALYAKCRRLGSARTVF 177
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q + IH+ +K+GL +P +Y K G + +F K+ P++ LWN MI
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLN--TMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR------ 113
GY++ + + M+ +++ DVR D + + GSLE++ +
Sbjct: 296 SGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ--VGSLEQARSMYEYVGRSD 353
Query: 114 ----VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VF+ +ALI + CG V+ AR +F + + D
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLL------YEKGDLKYECKVFRKITQPSVFL 54
+ L Q++ Q I GL + R+L++ GD+ Y K FR++++P + L
Sbjct: 15 LKHLDQVYVQLIVSGL-------HKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILL 67
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLE 106
WN +IKGY++ + + MY+D+ S V + +TF ++ K G + I G
Sbjct: 68 WNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF 127
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K VFVQN+L+S Y G++ AR +F
Sbjct: 128 KYGFGSNVFVQNSLVSMYAKFGQISYARIVF 158
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q K IH KLGL +P + ++G ++ F ++ +P++ LWN MI GY
Sbjct: 219 QGKSIHGLVTKLGLEFEPDIVISLT-TMYAKRGLVEVARFFFNRMEKPNLILWNAMISGY 277
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
+ + + ++ +++ ++R D+ T R + G + KS
Sbjct: 278 ANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDT 337
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV LI Y CG + +AR +F
Sbjct: 338 FVNTGLIDMYAKCGSIYLARCVF 360
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH QT K G + Q + +Y K G + Y VF K+ +V W ++I GY
Sbjct: 120 KQIHGQTFKYGFGSNVFV--QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYV 177
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ ++ + +V+ D + +T + I G + K +
Sbjct: 178 QNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPD 237
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L + Y G V++AR F
Sbjct: 238 IVISLTTMYAKRGLVEVARFFF 259
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL------YEKGDLKYECKVFRKITQPSVFLWN 56
L Q++ Q I GL + R+L++ GD+ Y K FR++++P + LWN
Sbjct: 2 HLDQVYVQLIVSGL-------HKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWN 54
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKS 108
+IKGY++ + + MY+D+ S V + +TF ++ K G + I G K
Sbjct: 55 AIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKY 114
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN+L+S Y G++ AR +F
Sbjct: 115 GFGSNVFVQNSLVSMYAKFGQISYARIVF 143
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q K IH KLGL +P + ++G ++ F ++ +P++ LWN MI GY
Sbjct: 204 QGKSIHGLVTKLGLEFEPDIVISLT-TMYAKRGLVEVARFFFNRMEKPNLILWNAMISGY 262
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
+ + + ++ +++ ++R D+ T R + G + KS
Sbjct: 263 ANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDT 322
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV LI Y CG + +AR +F
Sbjct: 323 FVNTGLIDMYAKCGSIYLARCVF 345
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH QT K G + Q + +Y K G + Y VF K+ +V W ++I GY
Sbjct: 105 KQIHGQTFKYGFGSNVFV--QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYV 162
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ ++ + +V+ D + +T + I G + K +
Sbjct: 163 QNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPD 222
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L + Y G V++AR F
Sbjct: 223 IVISLTTMYAKRGLVEVARFFF 244
>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
Length = 622
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 20/154 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLW 55
+ ++++ H++ IKLG+ CP+ R LL G ++ +F + +P F +
Sbjct: 55 LDEVRKAHARHIKLGV---DRCPRHARPLLAACALSGWPGGMELAASIFESLVEPEAFDY 111
Query: 56 NTMIKGY---SRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAG 103
NT+++G+ R D L +Y+D+L++ V D+YTFPF+ K R +
Sbjct: 112 NTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFVLKACAQLASLQQGRQLQA 171
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+EK + VQN+LIS Y CGE MAR F
Sbjct: 172 HIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAF 205
>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+Q+KQ H+ I GL+ P K + L+ G L Y ++F +I +P VF++NTMI
Sbjct: 1 MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 60
Query: 60 KGYSRI-DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM----- 112
K ++ I S N + ++L +++ S + YTF F+FK + G LE I +
Sbjct: 61 KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGL-GVLEGEQIRVHAIKI 119
Query: 113 ----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NA+I Y G VD AR +F S + D
Sbjct: 120 GLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQD 155
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ ++F ++++ V W T+I GY ++ K + ++ ++L++ V D
Sbjct: 170 GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQT-VALDQ------- 221
Query: 95 KGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
R I ++KS I M + +L+ Y CGE+D A +F+
Sbjct: 222 ---GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH 262
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LK++H+ I GL + K + L GD+ Y +VF +I+ P++F WN +I
Sbjct: 27 MLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIII 86
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
+GYS + + + ++L +L+ V D T+PFL K R S +KS + +
Sbjct: 87 RGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARL---SKQKSGVSVHAQIIKT 143
Query: 115 ------FVQNALISTYCLCGEVDMARGIF 137
F+QN+LI Y CG + A +F
Sbjct: 144 GHESDRFIQNSLIHMYASCGNIMWAHKVF 172
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLY---EKGDLKYECKVFRKITQPSVFLWNTMI 59
+LKQIH Q +K G T H +R L Y E +L Y VF +I+ P+ +WNTMI
Sbjct: 26 ELKQIHGQLLKKG--TIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMI 83
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIV 111
+ YS + + +L+Y +L + + YTFPFL K T I + K
Sbjct: 84 RAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFG 143
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V+ N+L+ Y + G + A +F
Sbjct: 144 SEVYATNSLLRVYAISGSIKSAHVLF 169
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ K+F+ + + +V W +MI G+ R HK + + +L + ++ D T
Sbjct: 191 GNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSL 250
Query: 95 KGFTRDIAGSLEKSCIVMRVFVQN----------ALISTYCLCGEVDMARGIF 137
G+LE+ + +N ALI Y CGE+ A +F
Sbjct: 251 SACAG--LGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVF 301
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+Q+KQ H+ I GL+ P K + L+ G L Y ++F +I +P VF++NTMI
Sbjct: 28 MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 87
Query: 60 KGYSRI-DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM----- 112
K ++ I S N + ++L +++ S + YTF F+FK + G LE I +
Sbjct: 88 KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGL-GVLEGEQIRVHAIKI 146
Query: 113 ----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NA+I Y G VD AR +F S + D
Sbjct: 147 GLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQD 182
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ ++F ++++ V W T+I GY ++ K + ++ ++L++ + +T
Sbjct: 197 GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASAL 256
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
R I ++KS I M + +L+ Y CGE+D A +F+
Sbjct: 257 AACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH 308
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 1 MHQLKQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ LKQIHSQ IK GL T K + + GDL Y +F+ I P+ +WN MI
Sbjct: 41 LQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMI 100
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
+G S +S + Y+ ++ S + YTFP +FK T+ I G+ E + V
Sbjct: 101 RGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTK-IRGAHEGKQVHAHVLKLGL 159
Query: 115 ----FVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI---RIKAVDDDLHELFPE 166
FV +LI+ Y GE+ AR +F S D LI K D+ ELF E
Sbjct: 160 EHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDE 219
Query: 167 YLVQ 170
V+
Sbjct: 220 IPVR 223
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL+ +F KI +V WN MI GY+ + +K + ++ +++S++ ++ TF +
Sbjct: 310 GDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSIL 369
Query: 95 KG--------FTRDIAGSLEKSCIVMR--VFVQNALISTYCLCGEVDMARGIF 137
+ + ++K+ M+ V + +LI Y CG++ +A+ IF
Sbjct: 370 PACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIF 422
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 3 QLKQIHSQTIKLGL-----LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
QL+QIH++ + LGL L + Y GD+ + +VF + +P VF WN
Sbjct: 36 QLRQIHARLLVLGLQFSGFLITKLIHASSSY------GDITFARQVFDDLPRPQVFPWNA 89
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSC 109
+I+GYSR + ++ +LMY + + V D++TFP L K R + + +
Sbjct: 90 IIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLG 149
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN LI+ Y C + AR +F
Sbjct: 150 FEADVFVQNGLIALYAKCRRLGCARTVF 177
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q + IH+ +K+GL T+P +Y K G + +F K+ P++ LWN MI
Sbjct: 238 LEQGRSIHASVMKMGLETEPDLLISLN--TMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCI----VMR-- 113
GY++ K+ + ++ +++ DVR D + + GSLE++ V R
Sbjct: 296 SGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQ--VGSLEQARWMDEYVSRSD 353
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
VF+ +ALI + CG V+ AR +F
Sbjct: 354 YRDDVFISSALIDMFAKCGSVECARSVF 381
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ LK++H+ ++ GL P+ K L L Y KVF +I+QP+++ WNT+I
Sbjct: 44 LKHLKELHATILRSGLFFHPYNASKLFSVAALSSFSSLDYARKVFEEISQPNLYTWNTLI 103
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKG--------FTRDIAGSLEKSCI 110
+ ++ + +L+++ +L N +TFPF+ K F++ I G K+ +
Sbjct: 104 RAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASL 163
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+F+ N+LI Y CG++D A +F E D
Sbjct: 164 GSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKD 197
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFL 93
GDL VF KI + V WN+MIKG+ + + L L+K+ +VR ++ T +
Sbjct: 181 GDLDSAYSVFVKIEEKDVVSWNSMIKGFV-LGGCPDKALELFQLMKAENVRPNDVTMVGV 239
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F R + +E++ I + + V NA++ Y G ++ AR +F
Sbjct: 240 LSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLEDARRLF 291
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LK++H I ++ + + + G+L Y VF +I +PS+++WN+MI
Sbjct: 18 MAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIV----- 111
KGYS +S + MY ++ + D++TFPF+ K + G +CIV
Sbjct: 78 KGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFE 137
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V+ AL+ Y CG+++ A +F
Sbjct: 138 VDVYAATALLQMYAACGDMEAALKVF 163
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L++IH+Q IK GL + GD+ Y VF +I P++F+WNT+I+
Sbjct: 9 MKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIR 68
Query: 61 GYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
G+S+ + N + +++D++ + + T+P +FK + + + G + K +
Sbjct: 69 GFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGL 128
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
F+QN +++ Y CG + A+ IF
Sbjct: 129 ENDQFIQNTILNMYVNCGFLGEAQRIF 155
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 3 QLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+LKQIH+ +I+ G+ + P K + L+ + + ++F +I P++F WNTMI+G
Sbjct: 50 KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109
Query: 62 YSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR----- 113
++ ++ V ++ + S + D +TFPFLFK + + SL + +V+R
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169
Query: 114 -VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEY 167
FVQN+L+ Y + G + A +F MS D + +I A++ +E Y
Sbjct: 170 LRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLY 225
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQIH+Q ++ GL P + L L Y +VF +I P+++ WNT+I+
Sbjct: 50 QLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109
Query: 62 YSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKG-------FT-RDIAGSLEKSCIVM 112
Y+ + +L++L +L +S D +TFPFL K FT + G + K +
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VF+ N+LI Y CGE+ + +F
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVF 194
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 11 TIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHK 69
T+K G+ K +C T + +Y K GDL+ VF + + VF+W+ MI G + K
Sbjct: 334 TLKQGM--KLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGK 391
Query: 70 NGVLMYLDLLKSDVRRDNYTF 90
+ + ++ + + V+ + TF
Sbjct: 392 DAIALFSKMQEDKVKPNAVTF 412
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQIH+Q ++ GL P + L L Y +VF +I P+++ WNT+I+
Sbjct: 50 QLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109
Query: 62 YSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKG-------FT-RDIAGSLEKSCIVM 112
Y+ + +L++L +L +S D +TFPFL K FT + G + K +
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VF+ N+LI Y CGE+ + +F
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVF 194
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQIH+Q ++ L P K + L++ G L Y VF +I P+ F N++I
Sbjct: 53 MSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSII 112
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF-----TRDIAGSLEKSCIVMRV 114
+GY+ + + +L Y ++ + D +TFP LFK + + K
Sbjct: 113 RGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDA 172
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
++QN L++ Y CG + AR +F
Sbjct: 173 YIQNTLMNMYSNCGCLVSARKVF 195
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H + KLG + + Q + +Y G L KVF K+ SV W TMI Y+
Sbjct: 157 KQLHCHSTKLGFASDAYI--QNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRVF 115
+ D + ++ + + V+ + T + R + ++++ I
Sbjct: 215 QWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTV 274
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +AL+ YC CG +AR +F
Sbjct: 275 LTSALMDVYCKCGCYPLARDLF 296
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
+F K+ + ++F WN MI G+ ++ + ++ ++ S V+ D T L T A
Sbjct: 295 LFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGA 354
Query: 103 GSL--------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L EK I + V + AL+ Y CG ++ A +F
Sbjct: 355 LELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 397
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 23/156 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-----CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLW 55
M+ LKQIH+ + LLT H K R+ + GDL Y ++F ++ QP+ F +
Sbjct: 29 MNHLKQIHAHS----LLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFY 84
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------------DI 101
NT+I+GY++ S V ++ + ++ V D +TF FL K +R +I
Sbjct: 85 NTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEI 144
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G++ K +FVQNALI+ Y + G A +F
Sbjct: 145 HGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVF 180
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ +VF + + V W M+ GYS+ + + + ++ ++ + +R D T +
Sbjct: 202 GELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVI 261
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T ++ + ++ V + NALI+ Y CG VD A +F
Sbjct: 262 SACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVF 312
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +FR I P F +NTMI+GY + S + + Y ++++ DN+T+P L
Sbjct: 79 ENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCL 138
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K TR I G + K + VFVQN+LI+ Y CGE++++ +F
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVF 190
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH Q KLGL + Q + +Y + G+++ VF K+ + W++M+ +
Sbjct: 152 KQIHGQVFKLGL--EADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARA 209
Query: 64 RIDSHKNGVLMYLDLLKS---DVRRDNYTFPFLFKGFT------RDIAGSLEKSCIVMRV 114
+ +L++ + L T I G L ++ + +
Sbjct: 210 GMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNI 269
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
VQ +L+ Y CG +D A IF
Sbjct: 270 IVQTSLVDMYVKCGCLDKALHIF 292
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LK++H I ++ + + + G+L Y VF +I +PS+++WN+MI
Sbjct: 18 MAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIV----- 111
KGYS +S + MY ++ + D++TFPF+ K + G +CIV
Sbjct: 78 KGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFE 137
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V+ AL+ Y CG+++ A +F
Sbjct: 138 VDVYAATALLQMYAACGDMEAALKVF 163
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +FR I P F +NTMI+GY + S + + Y ++++ DN+T+P L
Sbjct: 79 ENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCL 138
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K TR I G + K + VFVQN+LI+ Y CGE++++ +F
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVF 190
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH Q KLGL + Q + +Y + G+++ VF K+ + W++M+ +
Sbjct: 152 KQIHGQVFKLGL--EADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARA 209
Query: 64 RIDSHKNGVLMYLDLLKS---DVRRDNYTFPFLFKGFT------RDIAGSLEKSCIVMRV 114
+ +L++ + L T I G L ++ + +
Sbjct: 210 GMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNI 269
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
VQ +L+ Y CG +D A IF
Sbjct: 270 IVQTSLVDMYVKCGCLDKALHIF 292
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 22/166 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ Q+ QIH+QT+ GL + H PK L + + Y V + P+ F WN++I
Sbjct: 12 LTQIHQIHAQTLIHGLPLQTHLIPK------LIDLHSIDYARFVLDQTPSPTDFSWNSLI 65
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCI---VMR--- 113
+ Y+ S +N + +YL +L+S + N+TFPF+ K + + LE I V+R
Sbjct: 66 RAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACST-LGSVLEGEQIHTHVLRLGF 124
Query: 114 ---VFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAV 156
+FV N+LI YC C +D AR + DD G + + ++
Sbjct: 125 GSDLFVCNSLIDMYCKCFRLDSARNFW-----DDMGFRDEVSWNSI 165
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQIH+Q ++ GL P + L L Y +VF +I P+++ WNT+I+
Sbjct: 50 QLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109
Query: 62 YSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKG-------FT-RDIAGSLEKSCIVM 112
Y+ + +L++L +L +S D +TFPFL K FT + G + K +
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VF+ N+LI Y CGE+ + +F
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVF 194
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH K G+ K +C T + +Y K GDL+ VF + + VF+W+ MI G +
Sbjct: 392 IHVYIKKQGM--KLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMH 449
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTF 90
K+ + ++ + + V+ + TF
Sbjct: 450 GHGKDAIALFSKMQEDKVKPNAVTF 474
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L +VF I + V WN+MI + + + + ++ ++ +V+ + T +
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F R + +E++ I + + NA++ Y CG V+ A+ +F
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLF 295
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 3 QLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+LKQIH+ +I+ G+ + P K + L+ + + ++F +I P++F WNTMI+G
Sbjct: 50 KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109
Query: 62 YSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR----- 113
++ ++ V ++ + S + D +TFPFLFK + + SL + +V+R
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169
Query: 114 -VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEY 167
FVQN+L+ Y + G + A +F MS D + +I A++ +E Y
Sbjct: 170 LRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLY 225
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M Q KQIH+Q I L + K + + + G+L Y VF +I+ P+ F++N++I
Sbjct: 1 MKQSKQIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+GY +S + +Y L+ S + + +TFPF+ K A G +K
Sbjct: 61 RGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFA 120
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ VQN LI+ Y CG + AR +F
Sbjct: 121 SLICVQNGLINAYIACGFIRYARKMF 146
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRID 66
+H KLG + C + G ++Y K+F +++ S+ WN+MI GYS++
Sbjct: 110 VHGHAQKLGFASLI-CVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLG 168
Query: 67 SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEK--------SCIVMRVFVQN 118
K L++ ++ + D++T L +R +L + + + + + +N
Sbjct: 169 WCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARN 228
Query: 119 ALISTYCLCGEVDMARGIF 137
ALI Y CG + +A +F
Sbjct: 229 ALIDMYAKCGALVLAERVF 247
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQIHS I ++ C + + E GD++Y VF +I Q +V++WN+MI
Sbjct: 18 MKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
KGY + MY ++ + D++TFPF+ K + + + + K+
Sbjct: 78 KGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFE 137
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V+ + L++ Y CG+++ +F
Sbjct: 138 LDVYTSSCLLNMYVSCGDLNSGLKVF 163
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD---LKYECKVFRKITQPSVFLWNTMI 59
QLKQIH+ ++ P+ ++ L Y L Y VF +I QP+++ WNT+I
Sbjct: 87 QLKQIHAHMLRTSRFCDPY--TASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLI 144
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTR--------DIAGSLEKSCI 110
+GY+ L++L +L S N +TFPFLFK +R + G + K+ +
Sbjct: 145 RGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASL 204
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+F+ N+LI+ Y G D+A +F
Sbjct: 205 SSDLFILNSLINFYGSSGAPDLAHRVF 231
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----- 96
+VF + V WN MI ++ +L++ ++ DV+ + T +
Sbjct: 229 RVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKI 288
Query: 97 ---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
F R I +E + + + NA++ Y CG ++ A+ +F E D
Sbjct: 289 DLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKD 339
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G + Y ++F IT+P F+WNTMI+G ++ S N + +Y + VR D +TFPF+
Sbjct: 25 SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFV 84
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
K TR + G + + FV+N LI + CG++ +AR +F S + D
Sbjct: 85 LKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRD 143
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++G+++ K+F ++ + V WN MI GY S++ + M+ ++ D T
Sbjct: 187 KRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLS 246
Query: 93 LFKGFTRDI----AGSLEKSCIV------MRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
L T D+ AG CI + V + NALI Y CG + A +F E
Sbjct: 247 LLSACT-DLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMRE 305
Query: 143 DD 144
D
Sbjct: 306 KD 307
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQP-SVFLWN 56
+ +L+QIH+ +I+ G+ ++ K + L L + Y KVF KI +P +VF+WN
Sbjct: 30 LTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMR 113
T+I+GY+ I + + V +Y ++ S V D +T+PFL K G D+ +V+R
Sbjct: 90 TLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIR 149
Query: 114 ------VFVQNALISTYCLCGEVDMARGIF 137
++VQN+L+ Y CG+V A +F
Sbjct: 150 SGFGSLIYVQNSLLHLYANCGDVASAYKVF 179
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS I+ G + + Q L LY GD+ KVF K+ + + WN++I G++
Sbjct: 141 ETIHSVVIRSGFGSLIYV--QNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFV------- 116
+ + +Y ++ ++ D +T L + A +L K V + V
Sbjct: 199 ENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLH 258
Query: 117 -QNALISTYCLCGEVDMARGIF 137
N L+ Y CG V+ A+ +F
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLF 280
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +L+Q+H +K GL P + L + D+ Y ++ R +P+ F+WNT I+
Sbjct: 49 MARLRQLHGALVKSGLAKDPIAASRVVAFLAGKGRDVAYAARLVRHHPRPNAFMWNTAIR 108
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-------DIAGS-----LEKS 108
S V ++LD+L+S + TFP LF + R D AG+ + K
Sbjct: 109 ALSDGPGPDAAVALFLDMLRSPTPPERRTFPSLFASYARLGVRADDDGAGAALHGMVLKL 168
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141
+ +V+N++I+ Y G D A + Y C
Sbjct: 169 GLAGDAYVRNSMIAMYASWGRADEAL-LLYGQC 200
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ Q+KQ+H+ + G L+ P ++ + + +G + + VF +I +P +F++NT+I
Sbjct: 21 LRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLK----SDVRRDNYTFPFLFKGFTRDIAGS--------LEK 107
+G + + ++ V +Y + + VR D TFPF+ + T AG + K
Sbjct: 81 RGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVK 140
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ FV+NALI + CGE+ +A +F +D
Sbjct: 141 AGCESDAFVRNALIGMHASCGELGVASALFDGRARED 177
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 10/137 (7%)
Query: 18 TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77
K H ++G++ +F +I + V WN MI G+ R SH + ++
Sbjct: 206 VKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQ 265
Query: 78 LLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVM------RVFVQNALISTYCLC 127
+ + + D T L D+ L S M V + NALI Y C
Sbjct: 266 MQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKC 325
Query: 128 GEVDMARGIFYMSCEDD 144
G + A +F++ + D
Sbjct: 326 GSMKSALQVFWVMRDKD 342
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+K IH+Q I G P + +Y YE +++ KVF + VF+WNT+I+G
Sbjct: 23 IKSIHAQIIIGGFEENPFLGAKLVGKYAQCYES-NIEDARKVFDCLPDRDVFVWNTIIQG 81
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRD------IAGSLEKSCIVMR 113
Y+ + + +Y + S V + YTFPF+ K G +D I G + K + +
Sbjct: 82 YANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLD 141
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV NAL++ Y C E+ +R +F M E D
Sbjct: 142 LFVGNALVAFYAKCNEIGASRRVFDMISEKD 172
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ +LKQIH+Q I+ +R L + D Y C+VF +I P+ F+WNT+I
Sbjct: 38 LSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIG 97
Query: 61 GYSR-IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
+R +D + + ++ +L + V D +TFPFL K R + K +
Sbjct: 98 ACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGL 157
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ V+V N+LI Y CG + MA +F
Sbjct: 158 DLDVYVGNSLIHLYASCGCLSMALKVF 184
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+Q H+Q KLGL + +L G L KVF K+ S+ WN MI Y +
Sbjct: 146 RQAHAQIFKLGLDLDVYVGNSLIHLYA-SCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQ 204
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL--EKSCIVMR--------- 113
+N + ++++ +++ D YT + A SL V+R
Sbjct: 205 SGLFENALKLFVE-MQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGD 263
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V + ++L+ Y CG + MA+ +F
Sbjct: 264 VLINSSLVDMYSKCGSLRMAQQVF 287
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ LKQIH+ I G + + ++ + + G + Y ++F ++ +P +F+WNTM+
Sbjct: 26 LRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLFDQVAEPDIFMWNTMM 85
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G S+ S V +Y + ++ D +TF FL K TR I G K
Sbjct: 86 RGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACTRLEWRNMGFCIHGKALKHGFQ 145
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FV+N L+ + CG++ +AR +F S + D
Sbjct: 146 ENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRD 178
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++G++ K+F ++ + V WN MI G+ ++ + M+ +++ + D T
Sbjct: 222 KRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALEMFEEMISVGEQPDEVTMLS 281
Query: 93 LFKGFT--------RDIAGS-LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
L T + + S LE S + V + NAL Y CG ++ A +F E
Sbjct: 282 LLSACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNALTYMYAKCGSIERALEVFRGMREK 341
Query: 144 D 144
D
Sbjct: 342 D 342
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
LKQI +Q I GL+ P + + L E L Y K+ + I P++F WN I+G
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRG 127
Query: 62 YSRIDSHKNGVLMYLDLLK---SDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCI 110
+S ++ K L+Y +L+ + R D++T+P LFK I G + K +
Sbjct: 128 FSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRL 187
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ V NA I + CG+++ AR +F
Sbjct: 188 ELVSHVHNASIHMFASCGDMENARKVF 214
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++ KVF + + WN +I GY +I + + +Y + V+ D+ T L
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++ ++++ + M + + NAL+ + CG++ AR IF
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L K+F + + V LWN MI G + ++ + ++ ++ S+ + D T
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCL 396
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
++ I +EK + + V + +L+ Y CG + A +F+
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFH 448
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPK---QTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
+ L +IH+ IK LL KP + ++ +LL D Y +FR+I +P +N
Sbjct: 37 IRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMD--YAVSIFRQIDEPDSPAYNI 94
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV- 114
MI+G++ S +L++ ++ ++ V+ D +TFP + K +R ++ + ++M+
Sbjct: 95 MIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCG 154
Query: 115 -----FVQNALISTYCLCGEVDMARGIF 137
FV+N LI Y CGEV++AR +F
Sbjct: 155 FGSHGFVKNTLIHMYANCGEVEVARRVF 182
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY---EKGDLKYECKVFRKITQPSVFLWNT 57
M +L QIH Q +K G + + L+ Y E +L Y VF I+ P+ +WNT
Sbjct: 23 MKELMQIHGQLLKKGTIRNQ--LTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNT 80
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSC 109
M++ YS + + +L+Y +L + V ++YTFPFL K T+ I + K
Sbjct: 81 MLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRG 140
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V+ N+L+ Y + G + A +F
Sbjct: 141 FGLEVYATNSLLRVYAISGNIQSAHVLF 168
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L K+F+ + + +V W TMI G+ RI HK + + +L + ++ D+ T
Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSL 249
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I +EK+ I + + L Y CGE++ A +F
Sbjct: 250 SACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVF 300
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 3 QLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLK++H++ ++ GL P K L L Y +F +I QP+++ WNT+I+
Sbjct: 40 QLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRA 99
Query: 62 YSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
Y+ +++LDLL K + + +TFPF+ K + + G K M
Sbjct: 100 YASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGM 159
Query: 113 RVFVQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKA---VDDDLHELF 164
+++ N+L+ Y CG++ MA +F +SC+D + +I A +D ELF
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELF 215
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++F+ I+ V WN+MI +++ + ++ + ++L + + +V ++ T +
Sbjct: 175 GDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVL 234
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F R + +E+ I + + + NA++ Y CG VD A+ +F
Sbjct: 235 SACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLF 285
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +K++H+ I GL + + + DL + KVF +I P+ FLWN +I+
Sbjct: 466 MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 525
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
G ++ D+ + + Y + DN TFPF+ K R A + K ++
Sbjct: 526 GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 585
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI Y CG + AR +F
Sbjct: 586 DIFVSNSLIHLYAACGNLCYARSVF 610
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+++ +Q+H+ KLGLL+ +L G+L Y VF ++ V WN++I
Sbjct: 568 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYA-ACGNLCYARSVFDEMVVKDVVSWNSLIC 626
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
GYS+ + K+ + ++ + V+ D T + TR + +E CI +
Sbjct: 627 GYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV 686
Query: 113 RVFVQNALISTYCLCGEVDMARGIFY 138
V++ N L+ + G++ A +F+
Sbjct: 687 DVYLGNTLVDYFGRRGQLQSAEKVFF 712
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + Y K+F + P VF+WN +I+ YSR + +++ V MY + + V D +TFP++
Sbjct: 102 GQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVL 161
Query: 95 K--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K G + I G + K VFVQN L++ Y CG + +A+ +F
Sbjct: 162 KACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVF 212
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMI 59
+ Q + IH IK+GL +P Y K L K F ++ +V +WN MI
Sbjct: 271 LEQGRSIHGFVIKMGLEDEP--ALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMI 328
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC 109
GY++ + V ++ ++ +++ D+ T + GSLE KS
Sbjct: 329 SGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQ--VGSLELAQWMDDYVSKSN 386
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FV +LI Y CG V+ AR +F + + D
Sbjct: 387 YGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKD 421
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L+Q+H++ I+ GL + H L + Y VF ++ PS LWNT IKGYS
Sbjct: 41 LEQVHARIIRKGL-HQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS 99
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------GFTRDIA--GSLEKSCIVMRVF 115
S V +++ + +SD D +T+P L K G +A GS + + VF
Sbjct: 100 ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVF 159
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +LI Y CGE+ AR +F
Sbjct: 160 VMTSLIDLYGKCGEILCARKVF 181
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD+ VF + + V W+ +I GY + V ++L++ +V+ D +
Sbjct: 263 KSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVS 322
Query: 93 LFKGFTRDIAGSLE----------KSCI-VMRVFVQNALISTYCLCGEVDMARGIF 137
L ++ GSLE KS I V R V ALI CG +D A +F
Sbjct: 323 LMSACSQ--MGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLF 376
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L+Q+H++ I+ GL + H L + Y VF ++ PS LWNT IKGYS
Sbjct: 89 LEQVHARIIRKGL-HQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS 147
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------GFTRDIA--GSLEKSCIVMRVF 115
S V +++ + +SD D +T+P L K G +A GS + + VF
Sbjct: 148 ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVF 207
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +LI Y CGE+ AR +F
Sbjct: 208 VMTSLIDLYGKCGEILCARKVF 229
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +K++H+ I GL + + + DL + KVF +I P+ FLWN +I+
Sbjct: 1 MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 60
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
G ++ D+ + + Y + DN TFPF+ K R A + K ++
Sbjct: 61 GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 120
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI Y CG + AR +F
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVF 145
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+++ +Q+H+ KLGLL+ +L G+L Y VF ++ V WN++I
Sbjct: 103 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYA-ACGNLCYARSVFDEMVVKDVVSWNSLIC 161
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS------LEKSCIVM 112
GYS+ + K+ + ++ + V+ D T + TR D + + +E CI +
Sbjct: 162 GYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV 221
Query: 113 RVFVQNALISTYCLCGEVDMARGIFY 138
V++ N L+ + G++ A +F+
Sbjct: 222 DVYLGNTLVDYFGRRGQLQSAEKVFF 247
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI + GL+ + + + L + GD+ Y +F + P+ F WNTMI
Sbjct: 65 MFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMI 124
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---FTRDIAGSLEKSCIVMR--- 113
KGY + + G + ++++ D+ +F F K F I G S I R
Sbjct: 125 KGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFD 184
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
+FVQN LI Y G + AR +F
Sbjct: 185 SDLFVQNGLIQNYVETGCLGFARQMF 210
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E G L + ++F + + V W TMI GY+R + + ++ +L SDV+ + T
Sbjct: 199 ETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIA 258
Query: 93 LFKGFTRDIAGSLEKSC--------IVMRVFVQNALISTYCLCGEVDMARGIF 137
L ++ + K+ I + + NA++ Y CG + AR IF
Sbjct: 259 LLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIF 311
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L+Q+H++ I+ GL + H L + Y VF ++ PS LWNT IKGYS
Sbjct: 41 LEQVHARIIRKGL-HQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS 99
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------GFTRDIA--GSLEKSCIVMRVF 115
S V +++ + +SD D +T+P L K G +A GS + + VF
Sbjct: 100 ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVF 159
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +LI Y CGE+ AR +F
Sbjct: 160 VMTSLIDLYGKCGEILCARKVF 181
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPK---QTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
+ L +IH+ IK LL KP + ++ +LL D Y +FR+I +P +N
Sbjct: 37 IRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMD--YAVSIFRQIDEPDSPAYNI 94
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV- 114
MI+G++ S +L++ ++ ++ V+ D +TFP + K +R ++ + ++M+
Sbjct: 95 MIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCG 154
Query: 115 -----FVQNALISTYCLCGEVDMARGIF 137
FV+N LI Y CGEV++AR +F
Sbjct: 155 FGSHGFVKNTLIHMYANCGEVEVARRVF 182
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+QIH+ +K G + K T + G+++ +VF ++++ +V WN+M GY++
Sbjct: 144 EQIHALIMKCGFGSHGFV-KNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTK 202
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
+ + V ++ ++L+ D+R D T + R I +E+ + +
Sbjct: 203 SGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTL 262
Query: 117 QNALISTYCLCGEVDMARGIF 137
+L+ Y CG+VD AR +F
Sbjct: 263 ITSLVDMYAKCGQVDTARRLF 283
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L++IH+ IK GL + GD+ Y +F I P+++ WNT+I+
Sbjct: 38 MKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIR 97
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
G+SR + + +++D+L S V T+P +FK + + + G + K +
Sbjct: 98 GFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEK 157
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
F+QN +I Y G + AR +F
Sbjct: 158 DQFIQNTIIYMYANSGLLSEARRVF 182
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI + K L++ + + L + GD+ + +F ++ P+ ++WNTMI
Sbjct: 63 MLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMI 122
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---CIVMR--- 113
+GYS+ + G L + +++ V D +F F K G LE C+V +
Sbjct: 123 RGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKA-CEQFLGVLEGKSVHCVVWKMGF 181
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+ VQN L+ Y L G + +AR +F
Sbjct: 182 VYTLLVQNGLVHFYGLRGCLGLARLVF 208
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 3 QLKQIHSQTIKLGL-LTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQP-SVFLWNTM 58
+L+QIH+ +I+ G+ ++ K + L L + Y KVF KI +P +VF+WNT+
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR-- 113
I+GY+ I + + +Y ++ S V D +T+PFL K T D+ +V+R
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
++VQN+L+ Y CG+V A +F
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVF 179
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS I+ G + + Q L LY GD+ KVF K+ + + WN++I G++
Sbjct: 141 ETIHSVVIRSGFGSLIYV--QNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFV------- 116
+ + +Y ++ ++ D +T L + A +L K V + V
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 258
Query: 117 -QNALISTYCLCGEVDMARGIF 137
N L+ Y CG V+ A+ +F
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLF 280
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQIHS IK ++ C + + E GD++Y VF + Q +V++WN+MI
Sbjct: 18 MKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
KGY + MY ++ + D++TFPF+ K + + + + K+
Sbjct: 78 KGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFE 137
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V+ + L++ Y CG+++ +F
Sbjct: 138 LDVYTSSCLLNMYVSCGDLNSGLKVF 163
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +LKQIH+ IK GL++ + D+ Y VF +I + F+WNT+I+
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GYSRIDSHKNGVLMYLDLLKS--DVRRDNYTFPFLFKGF--------TRDIAGSLEKSCI 110
G+SR + + +++D+L S V+ T+P +FK + R + G + K +
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
F++N ++ Y CG + A IF
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIF 184
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRID 66
I + I LG++ + + + G + +F ++ Q + WN+MI G+ R
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237
Query: 67 SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQN 118
K+ + M+ ++ + DV+ D +T L R I + ++ + V
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVT 297
Query: 119 ALISTYCLCGEVDMARGIF 137
ALI YC CG ++ +F
Sbjct: 298 ALIDMYCKCGCIEEGLNVF 316
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
+++Q+H+ ++K + P +R L LY DL Y +F +I + S+ WNT+I
Sbjct: 31 EVEQLHAFSLKTAIFNHPFV--SSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 88
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
K Y +G++++ +L+ + DN+T P + KG R I G K
Sbjct: 89 KCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQ +L++ Y CGE+D AR +F
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVF 173
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 3 QLKQIHSQTIKLGL-LTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQP-SVFLWNTM 58
+L+QIH+ +I+ G+ ++ K + L L + Y KVF KI +P +VF+WNT+
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR-- 113
I+GY+ I + + +Y ++ S V D +T+PFL K T D+ +V+R
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
++VQN+L+ Y CG+V A +F
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVF 179
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IHS I+ G + + Q L LY GD+ KVF K+ + + WN++I G++
Sbjct: 143 IHSVVIRSGFGSLIYV--QNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFV--------Q 117
+ + +Y ++ ++ D +T L + A +L K V + V
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 260
Query: 118 NALISTYCLCGEVDMARGIF 137
N L+ Y CG V+ A+ +F
Sbjct: 261 NVLLDLYARCGRVEEAKTLF 280
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
+++Q+H+ ++K + P +R L LY DL Y +F +I + S+ WNT+I
Sbjct: 28 EVEQLHAFSLKTAIFNHPFV--SSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 85
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
K Y +G++++ +L+ + DN+T P + KG R I G K
Sbjct: 86 KCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQ +L++ Y CGE+D AR +F
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVF 170
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH +K+G + Q + +Y K G++ KVF + V LWN++I GY+
Sbjct: 132 KQIHGLALKIGFGSDVFV--QGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYA 189
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ------ 117
R + + L L + RD +++ L G ++ G +E + ++F Q
Sbjct: 190 RCGE----IDIALQLFEEMPERDAFSWTVLVDGLSK--CGKVESA---RKLFDQMPCRNL 240
Query: 118 ---NALISTYCLCGEVDMARGIFY 138
NA+I+ Y G+ D A +FY
Sbjct: 241 VSWNAMINGYMKSGDFDSALELFY 264
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFL 54
+ LK +H+ ++LGL + YLL + G+ Y ++F + +P++FL
Sbjct: 23 LKHLKHVHAALLRLGL-------DEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFL 75
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLE 106
+NTMI G DS + + +Y + K + D++TFPFL K R + G +
Sbjct: 76 FNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVV 135
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K+ FV +L+S Y CG +D A +F
Sbjct: 136 KAGCESDAFVNTSLVSLYGKCGFIDNAFKVF 166
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ C VF + + + W++MI+GY+ K + ++ +L R D Y +
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCA 256
Query: 97 FTRDIA---GSLEKSCIVMRVFVQN-----ALISTYCLCGEVDMARGIF 137
R A G+ + + F+ N ALI Y CG +D A +F
Sbjct: 257 CARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF 305
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE---KGDLKYECKVFRKITQPSVFLWNT 57
++ LKQ H+Q GL T +R L +G L Y C+VF +I P++ + NT
Sbjct: 18 VNHLKQAHAQVFTTGLDTNTF--ALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNT 75
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RD------IAGSLEKSC 109
+IK + + ++ +L + + DNYT P++ K RD + G K
Sbjct: 76 IIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLG 135
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+V +FV N+L++ Y +CG+V AR +F
Sbjct: 136 LVFDIFVGNSLMAMYSVCGDVIAARHVF 163
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL---------LYEKGDLKYECKVFRKITQPS 51
++QLKQIH+ +LT P+ ++ Y L L + G L Y +F I +P+
Sbjct: 11 INQLKQIHAL-----ILTSPNLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYIKKPN 65
Query: 52 VFLWNTMIKGY---SRIDSHK----NGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA-- 102
+ +N MI+ Y S +D +++Y +L +D+ D TFPFL K TR++A
Sbjct: 66 LPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISPDCLTFPFLLKECTRNVAIY 125
Query: 103 ------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G K + +FVQN+LIS Y C V +R +F
Sbjct: 126 GGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLF 166
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQI +Q + GL+ + + L E +L Y ++ +I + +VF WN I+G
Sbjct: 72 QLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRG 131
Query: 62 YSRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
Y + G ++Y LL ++ DN+T+P L KG + G + K
Sbjct: 132 YVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC 191
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMS 140
+FV NA I+ CGE+ +A +F S
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKS 219
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 2 HQLKQ---IHSQTIKLGLLTKPHCPKQTRYLLLYEKGD----LKYECKVFRKITQPSVFL 54
H LKQ I SQ I G ++ + LL + L Y ++F +I + F+
Sbjct: 40 HNLKQFNRILSQMILTGFISDTFAASR---LLKFSTDSPFIGLDYSLQIFDRIENSNGFM 96
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLE 106
WNTM++ Y + +S + +L+Y ++K++V DNYT+P + + ++I +
Sbjct: 97 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL 156
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K V+VQN LI+ Y +CG + AR +F
Sbjct: 157 KVGFDSDVYVQNTLINMYAVCGNMRDARKLF 187
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + D+ Y ++ R +P+ F+WNT+I+
Sbjct: 47 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVLYAERLVRHHPRPNSFMWNTVIR 106
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
S V +++D+L S D +FP L + R + G K +
Sbjct: 107 ALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKLGLAG 166
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+V+NA I+ Y CG D A +F
Sbjct: 167 DAYVRNATIAMYASCGRADEALALF 191
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 10/105 (9%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F I P+ F+ NTM+KGY + +S + +Y +L+S+V DNYT+P LF+ + +
Sbjct: 81 QIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRL 140
Query: 102 AGSLEKSCI---VMR------VFVQNALISTYCLCGEVDMARGIF 137
A + CI V++ V++QN LI+ Y +CG + AR +F
Sbjct: 141 A-EFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVF 184
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 29 LLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY 88
+L +KG+++ CK+F ++ Q + W+ +I Y + + ++ ++++ ++ + + D
Sbjct: 231 VLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEV 290
Query: 89 TFPFLFKGFTR---DIAGSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIFYMS 140
+ +R I G L +V V +QNALI Y C EV A+ +F S
Sbjct: 291 VVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSES 350
Query: 141 C 141
C
Sbjct: 351 C 351
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQI +Q + GL+ + + L E +L Y ++ +I + +VF WN I+G
Sbjct: 72 QLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRG 131
Query: 62 YSRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
Y + G ++Y LL ++ DN+T+P L KG + G + K
Sbjct: 132 YVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC 191
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMS 140
+FV NA I+ CGE+ +A +F S
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKS 219
>gi|296085509|emb|CBI29241.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LKQ+H+Q IK + P + R+ + + DL Y K+FR + +P+ F +NT+I
Sbjct: 24 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 83
Query: 60 KGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGF--------TRDIAGSLEKSCI 110
+ S + + +L+++++++ V + +TFP +FK R + G K +
Sbjct: 84 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 143
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD--DGLHELIRIKAVDDDLHELFPEYL 168
FV + ++ Y CG ++ A +FY D DG+ + + + VD D E+F E
Sbjct: 144 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRD--KKRRVDGDAVEVFRE-- 199
Query: 169 VQMLALPDTFM 179
+QM +P ++
Sbjct: 200 MQMAEVPPNYV 210
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 2 HQLKQ---IHSQTIKLGLLTKPHCPKQTRYLLLYEKGD----LKYECKVFRKITQPSVFL 54
H LKQ I SQ I G ++ + LL + L Y ++F +I + F+
Sbjct: 52 HNLKQFNRILSQMILTGFISDTFAASR---LLKFSTDSPFIGLDYSLQIFDRIENSNGFM 108
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLE 106
WNTM++ Y + +S + +L+Y ++K++V DNYT+P + + ++I +
Sbjct: 109 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL 168
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K V+VQN LI+ Y +CG + AR +F
Sbjct: 169 KVGFDSDVYVQNTLINMYAVCGNMRDARKLF 199
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD 82
+ +LL + G + K+F ++ + + W+ +I GY + ++ ++M++++ +
Sbjct: 240 ASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANG 299
Query: 83 VRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMAR 134
+R D + + I G + + I V +QNALI Y GE+ A+
Sbjct: 300 MRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQ 359
Query: 135 GIFYMSCEDDDGLHELIRI 153
+F +G H L +I
Sbjct: 360 KLF-------NGSHNLDQI 371
>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Brachypodium distachyon]
Length = 622
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLWNT 57
++++ H++ +KLGL P+ R LL G ++Y +F + +P F +NT
Sbjct: 57 EVRKAHARHVKLGL---DRSPRHARPLLAACALGSWPGGMEYAAAIFAALDEPEAFDYNT 113
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSC 109
+++G+ D + +Y +L+ V D YTFPF+ K G R + G + K
Sbjct: 114 LMRGHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASGQGRQLHGHVAKLG 173
Query: 110 IVMR-VFVQNALISTYCLCGEVDMARGIF 137
V N+LIS Y CGE ++AR F
Sbjct: 174 FSQHDEHVGNSLISFYGRCGEPELARRAF 202
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+H+Q LG+ + +L L +F KI + ++FLWN +I+GY+
Sbjct: 67 KQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNAR-NLFDKIPKQNLFLWNVLIRGYAW 125
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFV 116
H N +++Y +L +R DN+T PF+ K G R I + KS +FV
Sbjct: 126 NGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFV 185
Query: 117 QNALISTYCLCGEVDMARGIF 137
ALI Y CG V A +F
Sbjct: 186 GAALIDMYAKCGCVMDAGRVF 206
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-------GDLKYECKVFRKITQPSVF 53
M QLKQIH+ +++ L P + L LY + DL Y +VF ++ P+ F
Sbjct: 35 MSQLKQIHALSLRSTL------PNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSF 88
Query: 54 LWNTMIKGYSRIDS---HKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTRDIA------- 102
+WN +I+ ++ S + +L+Y +L +S DN+TFPF+ K A
Sbjct: 89 MWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQA 148
Query: 103 -GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L K V++ N+LI Y CG ++ A+ +F
Sbjct: 149 HAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVF 184
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ H+ +KLG + + + G L+ VF K+ Q S+ WN MI +
Sbjct: 146 KQAHAHLLKLGFQSDVYINNSLIHFYA-SCGSLESAKNVFDKMPQRSLVSWNAMIDAFVL 204
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE--------KSCIVM---- 112
+ + +++ + D YT + A SL ++C V
Sbjct: 205 FGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARD 264
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V V N+L+ YC CG +D+A IF
Sbjct: 265 HVLVNNSLLDMYCKCGSLDIATQIF 289
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 30/178 (16%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL---LLYEKGDLKYECKVFRKITQPSVFLWNT 57
M + KQI + I GL H P +R L + GD+ + ++F +I P++ WN+
Sbjct: 18 MSEFKQIQAFFITSGL--SQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNS 75
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR-- 113
+I+G+S+ + V +++ +L+ V D+ T+PF+ K R ++ +L C + +
Sbjct: 76 IIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEG 135
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF-----------------YMSCEDDDGLHEL 150
F+ N+LI Y CG++ AR +F Y C D D H++
Sbjct: 136 LWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQV 193
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNT 57
+ + ++ H++ +KLGL P + G + Y +F + P F +NT
Sbjct: 44 LDEARKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNT 103
Query: 58 MIKGYSRIDSH-----KNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGS 104
+++GY + +++D++ V D+YTFPF+FK R + G
Sbjct: 104 LMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGH 163
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
L K QN+LIS Y CGE D+AR F EDD+
Sbjct: 164 LVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQ-MEDDE 203
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-------GDLKYECKVFRKITQPSVF 53
M QLKQIH+Q ++ L PH L LY K DL Y ++F K P+ F
Sbjct: 42 MSQLKQIHAQALRSTLPDSPHS------LFLYSKILHFSSFNDLDYAYRLFSKFDNPNAF 95
Query: 54 LWNTMIKGYSR-IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAG 103
+WNT+I+ +R D + L+Y ++ + V D +T+PF+ K + +
Sbjct: 96 MWNTLIRACARSYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHA 155
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K V++ N+LI Y CG + A+ +F
Sbjct: 156 QMLKHGFESDVYINNSLIHFYASCGCSEPAQYVF 189
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
M Q QI++ I G H T Y L + +F +IT P +FLWN +
Sbjct: 27 MQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQITNPDIFLWNAI 86
Query: 59 IKGYSRIDS-HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS----LEKSCIVMR 113
IK YS+I S ++ ++ +L S V D++TFPFL K + + + C V+R
Sbjct: 87 IKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQFGFQVHCHVLR 146
Query: 114 ------VFVQNALISTYCLCGEVDMARGIF 137
VFV NAL++ YC G+V A +F
Sbjct: 147 NGFGSDVFVNNALLNFYCGFGDVVNAYKVF 176
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ KVF + +NTMI G++R ++ ++ VR D YTF L
Sbjct: 167 GDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALL 226
Query: 95 KGFT--------RDIAGSL--EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + R + G + E C V + N L+ Y CG + MA +
Sbjct: 227 SGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVL 279
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+G++K ++F ++ + V W MI GYS + + +++ L ++ D
Sbjct: 302 RGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAA 361
Query: 94 FKGFTRDIAGSLE-------------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS 140
R G+LE +C + R F +A++ Y CG +D+A +F +
Sbjct: 362 LSACAR--LGALELGRRIHRQYAGENWTCSINRGFT-SAVVDMYAKCGSIDIALDVFRKT 418
Query: 141 CED 143
+D
Sbjct: 419 SDD 421
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQ HSQ I+LGL + ++ + + GDL Y +VF KI P +++NT+
Sbjct: 33 MAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIF 92
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
+GY R +N + MY +L V + +T+P L + D A
Sbjct: 93 RGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYA 135
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + E D Y ++ R +P+ F+WNT I+
Sbjct: 45 MAHLRQLHAALVKSGLSKDPIAASRAVAFCAGEGRDAAYAARIVRYHPRPNSFMWNTAIR 104
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
S V +++D+L+S + TFP LF + R + G + K +
Sbjct: 105 ALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLFAAYARLGRADDGAALHGMVLKLGLAG 164
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+ +N I+ Y G D A +F
Sbjct: 165 DAYTRNTTIAMYASSGRADEALALF 189
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +LKQIH+ IK GL++ + D Y VF +I + F+WNT+I+
Sbjct: 38 MRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GYSRIDSHKNGVLMYLDLLKS--DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
G+SR + + +++D+L S V+ T+P +FK + R + G + K +
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGL 157
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
F++N ++ Y CG + A +F
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLVEAWRLF 184
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
K+F ++ Q + WN+MI G+ R K+ + M+ ++ + DV+ D +T L
Sbjct: 213 KLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACA--Y 270
Query: 102 AGSLEKSCIVMRVFVQN----------ALISTYCLCGEVDMARGIF 137
G+ E+ + + V+N ALI YC CG + +F
Sbjct: 271 LGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVF 316
>gi|255562790|ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538285|gb|EEF39892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 476
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ Q+H IK G+ P T LL DLKY +F P++F++NT+++G+
Sbjct: 46 EISQVHGFMIKTGIDQDPFA---TSKLLASSIQDLKYAASIFNHTQNPNLFMYNTLLRGF 102
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRV 114
S D+ K ++ +L + D ++F + K R++A G + +S +M V
Sbjct: 103 SIGDNPKQAFAVFKNLRAQRIELDQFSFITILKASARELAVKAGQGIHGIVARSGYLMFV 162
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V+N L+ Y +CG + A+ +F
Sbjct: 163 NVKNTLLHLYSVCGLIGDAQKLF 185
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LK +H++ I GL+++ K + + + GDL Y VF + QP+ F++N +I
Sbjct: 57 MRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLI 116
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--GSLEKSCIVMR---- 113
+GYS N + +Y+ +++S + +T PF+ K +A + C +R
Sbjct: 117 RGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGML 176
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
V+V NALI+ Y + G V A +F
Sbjct: 177 SHVYVHNALINAYAVFGFVQCAYQVF 202
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G +++ ++F +I + +V WN+MI Y + K +L++ + ++ + D T
Sbjct: 293 KHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVS 352
Query: 93 LFKGFTR--DIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ ++ D+A G + + IV+ V + N+L+ Y CG ++ F+ +D
Sbjct: 353 VLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGALETVLD-FFFEFKDK 411
Query: 145 DGLHELIRIKAVDDDLHELFPEYLVQML----ALPDTFMGEGL 183
+ + I I+A+ H L L M+ PD F GL
Sbjct: 412 NLVSWNIVIQALALHGHGLDALKLFNMMHTTGIWPDKFTFMGL 454
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H Q I+LG+L+ H + Y G ++ +VF +++ ++ WN+MI GY R
Sbjct: 166 VHCQAIRLGMLS--HVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRN 223
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLF----KGFTRDIAGS----LEKSCIVMRVFVQ 117
K L++ ++ ++ + D +T L K DI S +E + I + ++
Sbjct: 224 GLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILR 283
Query: 118 NALIS-TYCLCGEVDMARGIF 137
NAL+ Y G + AR IF
Sbjct: 284 NALLDIAYSKHGLIRHAREIF 304
>gi|449528126|ref|XP_004171057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 415
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LK +H++ I GL+++ K + + + GDL Y VF + QP+ F++N +I
Sbjct: 1 MRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--GSLEKSCIVMR---- 113
+GYS N + +Y+ +++S + +T PF+ K +A + C +R
Sbjct: 61 RGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGML 120
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
V+V NALI+ Y + G V A +F
Sbjct: 121 SHVYVHNALINAYAVFGFVQCAYQVF 146
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G +++ ++F +I + +V WN+MI Y + K +L++ + ++ + D T
Sbjct: 237 KHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVS 296
Query: 93 LFKGFTR--DIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ ++ D+A G + + IV+ V + N+L+ Y CG ++ F+ +D
Sbjct: 297 VLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGALETVLD-FFFEFKDK 355
Query: 145 DGLHELIRIKAVDDDLHELFPEYLVQML----ALPDTFMGEGL 183
+ + I I+A+ H L L M+ PD F GL
Sbjct: 356 NLVSWNIVIQALALHGHGLDALKLFNMMHTTGIWPDKFTFMGL 398
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H Q I+LG+L+ H + Y G ++ +VF +++ ++ WN+MI GY R
Sbjct: 110 VHCQAIRLGMLS--HVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRN 167
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLF----KGFTRDIAGS----LEKSCIVMRVFVQ 117
K L++ ++ ++ + D +T L K DI S +E + I + ++
Sbjct: 168 GLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILR 227
Query: 118 NALIS-TYCLCGEVDMARGIF 137
NAL+ Y G + AR IF
Sbjct: 228 NALLDIAYSKHGLIRHAREIF 248
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
LKQ S I GL H +L DL Y +F ++ P +FLWNT+I+G+
Sbjct: 23 HLKQTTSILITSGL---AHHTFFLSDILRSATKDLGYTLLLFDRLATPYIFLWNTIIRGF 79
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-------DIAGSLEKSCIVMRVF 115
S + ++ Y L V D +TFP L K F++ + K + F
Sbjct: 80 SASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVKFGLDFDAF 139
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
VQN+L+S + CG VD +R +F + + D
Sbjct: 140 VQNSLVSAFAHCGYVDCSRRLFIETAKKD 168
>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+Q + G + H T+ ++ Y K GD KVF ++ + +V W+ I GYS+
Sbjct: 19 IHNQILTNGFASNIHLS--TKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQN 76
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
+++ +L++LD+L++ + + +T+ + + T I G LEKS + VQ
Sbjct: 77 GCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQ 136
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDD----DGLHELIRIKAVDDDLHELFPEYLVQMLA 173
+AL+ + CG+++ A +F M E D + + ++ D +F + + ++
Sbjct: 137 SALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMS 196
Query: 174 LPDTF 178
PD F
Sbjct: 197 -PDLF 200
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL---LLYEKGDLKYECKVFRKITQPSVFLWNT 57
M + KQI + I GL H P +R L + GD+ + ++F +I P++ WN+
Sbjct: 25 MSEFKQIQAFFITSGL--SQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNS 82
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR-- 113
+I+G+S+ + V +++ +L+ V D+ T+PF+ K R ++ +L C + +
Sbjct: 83 IIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEG 142
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
F+ N+LI Y CG++ AR +F
Sbjct: 143 LWFDRFIANSLIHMYGSCGDIGSARKVF 170
>gi|224117958|ref|XP_002317698.1| predicted protein [Populus trichocarpa]
gi|222858371|gb|EEE95918.1| predicted protein [Populus trichocarpa]
Length = 300
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCP-KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M L+QI + I+LG K + E GD+ Y VF K P F+WNTMI
Sbjct: 1 MKVLEQILAHAIQLGYEQSLFVAGKIIVFCAAAEHGDMSYAVSVFEKTENPDAFIWNTMI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNA 119
+G+ + + Y + + + D++TF FL K DI S ++ I + N
Sbjct: 61 RGFGKTNDAPKAFEFYKRMQERGLVADDFTFSFLLK----DIETSRQQ--IFPALVAWNT 114
Query: 120 LISTYCLCGEVDMARGIF 137
+I +Y CG+ A G+F
Sbjct: 115 MIGSYVSCGKFKEALGMF 132
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLKQIH++ IK L +Q + G+ +Y VF ++ PS F WN MI+
Sbjct: 35 QLKQIHTKIIKHNLTNDQLLVRQL-ISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSL 93
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
S + +L+++ +L + D +TFPF+ K + G K+ V
Sbjct: 94 SLNHKPREALLLFILMLSHQPQFDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFNDV 153
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F QN L+ Y CG+ D R +F
Sbjct: 154 FFQNTLMDLYFKCGKPDCGRKVF 176
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +FR I P F + TMI+GY S + + Y ++++ + DN+T+P L
Sbjct: 80 ENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCL 139
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K TR I G + K + VFVQN+LI+ Y CGE++++ +F
Sbjct: 140 LKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVF 191
>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
Length = 625
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLW 55
+ +++++H++ IKLGL CP+ R LL G ++ +F + +P F +
Sbjct: 58 LDEVRKVHARHIKLGL---DRCPRYARPLLAACAVSGWPGGMELAASIFESLVEPEAFDY 114
Query: 56 NTMIKGYSRIDSH----KNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKS 108
NT+++G+ + +Y+D L++ V D+YTFPF+ K + A G ++
Sbjct: 115 NTLMRGHVSGGGGDRDPAAALRLYIDGLEAGVSPDSYTFPFVLKACAQLAALQEGRQLQA 174
Query: 109 CIVMRVF-----VQNALISTYCLCGEVDMARGIF 137
IV F VQN+LIS Y CG MAR F
Sbjct: 175 HIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAF 208
>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 801
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ Q H IK L P + LL D+ Y +F I P++F++NTM++GY
Sbjct: 28 EIHQFHCYMIKTSLTNVPFTLSK---LLAASIFDMNYASTIFTCIQNPNLFMYNTMLRGY 84
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRV 114
S +S + ++ L S D ++F + K GF R + G + KS V
Sbjct: 85 SVSNSSNKALPIFNKLRNSGNGLDPFSFIAVMKACGRSFEVGFGRGVHGIVVKSGNRFFV 144
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
+ N ++ YC+CG +D AR +F E +D
Sbjct: 145 DLNNTILQFYCVCGRIDDARKVFDECPERND 175
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
K +H IK+G + T + +Y K Y KVF + + V LWN +IK Y+
Sbjct: 231 KSLHGYCIKIGFCCNLNVV--TALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYA 288
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R + V + + + V+ ++ T L ++ R + +E+ + + V
Sbjct: 289 RSCLVEEAVALLQSMRQEGVKPNSSTLVGLLSVYSASGSMQGVRYVTSLIEEEKLELDVI 348
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ AL+ Y CG +D A IF
Sbjct: 349 LGTALVDVYAKCGFLDEAMEIF 370
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQIH+Q ++ L P+ + + L Y KVF +I QP+++ WN +I+
Sbjct: 154 QLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRA 213
Query: 62 YSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
+ VL+++ +L S + +TFP L K + + G K+
Sbjct: 214 LATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGD 273
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYM 139
VFV N+LI Y CG +D+A +F M
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFEM 300
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + +Y K GD++ +VF I VF+W+ MI G + + + ++LD+ ++ V+
Sbjct: 516 TSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVK 575
Query: 85 RDNYTFPFLF 94
++ TF L
Sbjct: 576 PNSVTFTNLL 585
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LKQIH++ I+LG + K + E GD+ Y VF KI P F++NTMI
Sbjct: 1 MKDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+G+ + + + Y + + + D++TF FL K R + S K +
Sbjct: 61 RGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLN 120
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV+N L+ Y +++ +R +F
Sbjct: 121 SHVFVRNTLVHMYGTFKDIEASRQLF 146
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 23/193 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H T+K GL H + + +Y D++ ++F +I P + WN +I +
Sbjct: 108 RLMHCSTLKRGL--NSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHV 165
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFL-----------FKGFTRDIAGSLEKSCIVM 112
+ M+ +LK + D TF + F + ++ CI
Sbjct: 166 SCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITE 225
Query: 113 RVFVQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHE---LFPEYL 168
V N+L+ Y CG + A IF M+ ++ + +I A +E LF L
Sbjct: 226 ---VNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEALALFSNML 282
Query: 169 VQMLALPD--TFM 179
Q L PD TF+
Sbjct: 283 EQKLWAPDDITFL 295
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIK 60
+LKQIH++ +K GL+ + K + + D L Y VF +P FLWN MI+
Sbjct: 29 ELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 88
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVM 112
G+S D + +L+Y +L S + YTFP L K T I + K
Sbjct: 89 GFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN 148
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V+ N+LI++Y + G +A +F E DD
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G + +FRK+ + + W TMI GY + D +K + ++ ++ SDV DN +
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLAN 252
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I L K+ I M + LI Y CGE++ A +F
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCP-KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
KQIH+ +KLGL + P K + + L Y C++FR P VF+ NT+I+G
Sbjct: 21 FKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGL 80
Query: 63 SRIDSHKNGVLMYLDLLKSDVR-RDNYTFPFLFKGFT--RDIAGSLEKSCIVM------R 113
D ++ +L ++++ ++ D+++F F+ K R + ++ C +
Sbjct: 81 YESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTH 140
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+FV LIS Y CG V AR +F
Sbjct: 141 LFVGTTLISMYGECGFVGFARKVF 164
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L+ ++F ++ W+TMI G++ + + +L + +R + +
Sbjct: 215 KAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTG 274
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ F + + G +EKS + V V NAL+ TY CG V MA+ +F
Sbjct: 275 VLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVF 327
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 1 MHQLKQIHSQTIKLGLLTK-----------PHCPKQTRYLLLYEKGDLKYECKVFRKITQ 49
M +L Q+H IK ++ CP E +L Y VF I
Sbjct: 18 MVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCP---------ETMNLSYARSVFESIDC 68
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIA----- 102
PSV++WN+MI+GYS + ++ Y ++L+ D +TFP++ K + RDI
Sbjct: 69 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 128
Query: 103 -GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + K+ + ++V L+ Y CGEV+ +F
Sbjct: 129 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVF 164
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 12 IKLGLLTKPHCPKQ--------TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
+ G P+C + T + +Y K GD++ +F + + ++ WN++I GY
Sbjct: 215 VACGRCFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGY 274
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
S+ + + M+ D+L + D TF + + + I + K+ V
Sbjct: 275 SQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDA 334
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+ AL++ Y G + A+ +F
Sbjct: 335 AIVCALVNMYAKTGNAESAKKMF 357
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQIH+Q I ++ + + L D+ Y K+F+ I P++F+WNT+I
Sbjct: 62 MTQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKLFKSIQDPNIFMWNTII 121
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ + + + Y+ +L+ V + YTFPFL KG
Sbjct: 122 RALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKG 158
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKI-----TQPSVF 53
++QLKQ+H Q K GL P + + L Y K F + ++F
Sbjct: 38 LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALF 97
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSL 105
+ N++I+GYS + +L+Y+ +L V ++YTFPF+ G T+ A GS+
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + VF+QN LI Y CG +D +F
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF 189
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H +K+GL + Q + Y E G + + KVF +++ +V W ++I GY+R
Sbjct: 152 QVHGSVVKMGL--EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTY 124
D K V ++ ++L + N K D A L C+ + + N ++S Y
Sbjct: 210 GDRPKEAVSLFFEMLNKVMV--NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 267
>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 615
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 3 QLKQIHSQTIKLGL-LTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++++ H IKLGL + PH P L G ++Y +F + +P F +NT+++
Sbjct: 50 EVRKAHVANIKLGLDRSPPHLRPLLAACALGEWPGSMEYAAAIFATLDEPEAFDYNTLMR 109
Query: 61 GYSRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAG-SLEKSCI 110
G+ L +Y+D+L +DV D YTFPF+ K R + G +++ +
Sbjct: 110 GHVVGGRDPAAALRLYVDMLHNDVVPDGYTFPFVLKACAQLLAFRQGRQLQGHAMKLGFL 169
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
QN+LIS Y CGE ++AR F
Sbjct: 170 EHDEHAQNSLISFYGKCGEPELARRAF 196
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLG-LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT-QPSVFLWNTM 58
M +LKQIH+Q K G +L + + G+L Y VF ++ +P+ ++WN M
Sbjct: 23 MMELKQIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAKIVFDSLSSRPNTYIWNAM 82
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
++GY+ + + +++Y +L V + YTFPFL K + + + + K
Sbjct: 83 LRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQVHAQIIKLGF 142
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
V+ N+L+ Y G ++ AR IF
Sbjct: 143 GSDVYTTNSLLHAYAASGFIESARIIF 169
>gi|255541023|ref|XP_002511576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550691|gb|EEF52178.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 24/152 (15%)
Query: 3 QLKQIHSQTIKLGL--------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL 54
LKQ H+ +K+GL HC ++L + D Y +FR P VF+
Sbjct: 20 SLKQFHANVLKIGLQNDLLLIGKLLLHCT-----IVLSDSID--YALSLFRDTPNPDVFM 72
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIV 111
+NT+I+G + DS + + +L+L K S + D+++F F+ K + R + G ++ C
Sbjct: 73 YNTLIRGLAESDSPQKSIATFLELRKESALSPDSFSFAFVLKAAAYLRSLRGGIQLHCQA 132
Query: 112 MR------VFVQNALISTYCLCGEVDMARGIF 137
+ +FV LIS Y CG V AR +F
Sbjct: 133 WKYGLNAHLFVGTTLISMYGECGCVGYARQVF 164
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ ++F ++ W+TMI G++ + +LL+ R + + +
Sbjct: 217 GELQLAREMFLEMAVKDDVSWSTMIVGFAHNGCFDEAFGYFRELLRKGTRPNEVSLTGVL 276
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + G +EK+ ++ + V NAL+ TY CG + MA+ +F
Sbjct: 277 SACAQAGAFEFGKILHGFIEKAGLLWIISVNNALLDTYSKCGNLGMAQLVF 327
>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
Length = 338
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL + KVF +I P+ FLWN +I+G ++ D+ + + Y + DN TFPF+ K
Sbjct: 14 DLVFAHKVFDQIKAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 73
Query: 96 GFTRDIA--------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R A + K ++ +FV N+LI Y CG + AR +F
Sbjct: 74 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVF 123
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+++ +Q+H+ KLGLL+ +L G+L Y VF ++ V WN++I
Sbjct: 81 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYA-ACGNLCYARSVFDEMVVKDVVSWNSLIC 139
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS------LEKSCIVM 112
GYS+ + K+ + ++ + V+ D T + TR D + + +E CI +
Sbjct: 140 GYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV 199
Query: 113 RVFVQNALISTYCLCGEVDMARGIFY 138
V++ N L+ + G++ A +F+
Sbjct: 200 DVYLGNTLVDYFGRRGQLQSAEKVFF 225
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKI-----TQPSVF 53
++QLKQ+H Q K GL P + + L Y K F + ++F
Sbjct: 38 LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALF 97
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSL 105
+ N++I+GYS + +L+Y+ +L V ++YTFPF+ G T+ A GS+
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + VF+QN LI Y CG +D +F
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF 189
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H +K+GL + Q + Y E G + + KVF +++ +V W ++I GY+R
Sbjct: 152 QVHGSVVKMGL--EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVM--------RV 114
D K V ++ +++++ +R + T + RD+ E+ C + +V
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG-ERVCAYIGELGLKLNKV 268
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V NAL+ Y CG +D A+ +F
Sbjct: 269 MV-NALVDMYMKCGAIDAAKRLF 290
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
GD++ +VF +I + + WNTMI G + ++ + ++ ++ ++ D T +
Sbjct: 412 NGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGI 471
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + +EK+ I + + AL+ + CG+ A +F E D
Sbjct: 472 ASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERD 530
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIK 60
++ IH+Q IK GL + K + ++ D Y VF I +P++ +WNTM +
Sbjct: 3 SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVM 112
G++ + + +YL ++ + D+YTFPFL K + I G + K +
Sbjct: 63 GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++V +LIS Y G ++ AR +F +S D
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRD 154
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C++F + V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 266 LYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 325
Query: 90 FPFLFKGFTR----DIAGSLE-------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ DI + K + +Q +LI Y CG++D A+ +F
Sbjct: 326 MLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVF 384
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLD-LLKSDVRRDNYTFP 91
+G ++ K+F +I V WN MI GY ++K + ++ + ++ ++VR D T
Sbjct: 167 SRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMV 226
Query: 92 FLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
+ R + + + + NALI Y GEV+ A CE
Sbjct: 227 TVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETA-------CEL 279
Query: 144 DDGL 147
DGL
Sbjct: 280 FDGL 283
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++Y VF P VFLWN +I+ Y+R + N + MY + + +R D +TFP +
Sbjct: 92 GEIRYARNVFDYYPDPDVFLWNAIIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVL 151
Query: 95 KGFTRDIA---------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K T +A G + + VFVQN L++ Y C ++ +A +F
Sbjct: 152 KACTASLAFLDIGRRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISLANIVF 203
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH IK+GL + +Y K G + + F ++ P++ LWN MI GY+
Sbjct: 266 KSIHGCVIKMGL--EFEIDLLISLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYA 323
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + ++ ++ + D+ T + R ++ + +S F
Sbjct: 324 KNGYAEEALELFRRMITMNFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFRNDAF 383
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V +ALI + CG VD+AR +F + + D
Sbjct: 384 VSSALIDMFSKCGSVDLARDVFDRALDKD 412
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK------GDLKYECKVFRK--ITQPSV 52
+ +LKQ+H +K GLL H P L+ L Y F S+
Sbjct: 38 LKELKQLHCDMMKKGLLC--HKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASL 95
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GS 104
F++N +I+GY+ +L+Y+ +L + D YTFPFL ++ +A G+
Sbjct: 96 FMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGA 155
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + +FV N+LI Y CG+VD+ R +F
Sbjct: 156 VLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLF 188
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
Q+H +K+GL + E G + K+F + + +V W ++I GYS
Sbjct: 151 QVHGAVLKMGLEGDIFVSNSLIHFY-AECGKVDLGRKLFDGMLERNVVSWTSLINGYSGR 209
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQ 117
D K V ++ + ++ V + T + + + + + + + +
Sbjct: 210 DLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMV 269
Query: 118 NALISTYCLCGEVDMARGIF 137
NAL+ Y CG++ AR IF
Sbjct: 270 NALVDMYMKCGDICAARQIF 289
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFL 54
+QLK IH++ ++L L Q YLL + G Y VF ++ +P++FL
Sbjct: 29 FNQLKHIHARLLRLHL-------DQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFL 81
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVM 112
WNTMI+G D + + +Y + +N+T PF+ K R D+ L+ +++
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 113 R------VFVQNALISTYCLCGEVDMARGIF 137
+ VFV+ +L+S Y C D A +F
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IHS +K G +T L LY K D KVF I +V W +I GY
Sbjct: 135 KIHSLLVKAGY--DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYIS 192
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
+ + + LL+ ++ D+++ + R I + S + VFV
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFV 252
Query: 117 QNALISTYCLCGEVDMARGIFYMSCEDD 144
+L+ Y CG ++ A IF E D
Sbjct: 253 ATSLLDMYVKCGNLERANLIFSAMPEKD 280
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFL 54
+QLK IH++ ++L L Q YLL + G Y VF ++ +P++FL
Sbjct: 29 FNQLKHIHARLLRLHL-------DQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFL 81
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVM 112
WNTMI+G D + + +Y + +N+T PF+ K R D+ L+ +++
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 113 R------VFVQNALISTYCLCGEVDMARGIF 137
+ VFV+ +L+S Y C D A +F
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IHS +K G +T L LY K D KVF I +V W +I GY
Sbjct: 135 KIHSLLVKAGY--DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYIS 192
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
+ + + LL+ ++ D+++ + R I + S + VFV
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFV 252
Query: 117 QNALISTYCLCGEVDMARGIFYMSCEDD 144
+L+ Y CG ++ A IF E D
Sbjct: 253 ATSLLDMYVKCGNLERANLIFSAMPEKD 280
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E +L Y VF I PSV++WN+MI+GYS + ++ Y ++L+ D +TFP+
Sbjct: 53 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 112
Query: 93 LFKGFT--RDIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + RDI G + K+ + ++V L+ Y CGEV+ +F
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVF 165
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + +Y K GDL+ +F + + ++ WN++I GYS+ + + M+LD+L +
Sbjct: 238 TSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA 297
Query: 85 RDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D TF + + + I + K+ V + AL++ Y G+ + A+
Sbjct: 298 PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKA 357
Query: 137 F 137
F
Sbjct: 358 F 358
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ Y +VF I Q +V W ++I G+ + + + + ++ + V+ + L
Sbjct: 156 GEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLL 215
Query: 95 KGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + S + V + +LI Y CG++ AR +F
Sbjct: 216 VACGRCFDPYFQ-SKVGFNVILATSLIDMYAKCGDLRTARYLF 257
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQPSV 52
M QLKQ+H+ T++ P++ L LY K D+ Y +VF I S
Sbjct: 52 MSQLKQLHAFTLRTTY------PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 105
Query: 53 FLWNTMIKGYSRIDSHKNGVLM-YLDLL-KSDVRRDNYTFPFLFK------GFT--RDIA 102
F+WNT+I+ + S K M Y +L + + D +TFPF+ K GF+ + +
Sbjct: 106 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 165
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K V+V N LI Y CG +D+AR +F
Sbjct: 166 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 200
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H Q +K G + + LY G L KVF ++ + S+ WN+MI
Sbjct: 162 KQVHCQIVKHGFGGDVYV--NNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 219
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC---I 110
R + + + ++ ++ +S D YT + GSL + C +
Sbjct: 220 RFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAG--LGSLSLGTWAHAFLLRKCDVDV 276
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
M V V+N+LI YC CG + MA +F
Sbjct: 277 AMDVLVKNSLIEMYCKCGSLRMAEQVF 303
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E +L Y VF I PSV++WN+MI+GYS + ++ Y ++L+ D +TFP+
Sbjct: 53 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 112
Query: 93 LFKGFT--RDIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + RDI G + K+ + ++V L+ Y CGEV+ +F
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVF 165
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + +Y K GDL+ +F + + ++ WN++I GYS+ + + M+LD+L +
Sbjct: 255 TSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA 314
Query: 85 RDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D TF + + + I + K+ V + AL++ Y G+ + A+
Sbjct: 315 PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKA 374
Query: 137 F 137
F
Sbjct: 375 F 375
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M L+Q HSQ I+LGL H Q + L DL Y K+F I P F +NT+I
Sbjct: 57 MPDLRQYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTII 116
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
K Y + S N +L+Y +L+ V +++TFP + + + I + K
Sbjct: 117 KAYLQHLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFG 176
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFY 138
V N LI Y + AR + Y
Sbjct: 177 AHVISLNNLIHMYARFQAFEEARCVLY 203
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
L+QIH++ I+ GL ++ +L G + Y +F +I P F WN +I+
Sbjct: 42 HLRQIHAKIIRSGLSNDQLLTRKLIHLY-STHGRIAYAILLFYQIQNPCTFTWNLIIRAN 100
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ + +++Y +++ + D +TFPF+ K T + + GSL K V
Sbjct: 101 TINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDV 160
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FVQN LI Y CG A +F
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVF 183
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L GDL+ ++F +I +V W MI GY R + + ++ + ++ + YT
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260
Query: 91 PFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L K T R I K+CI + V++ ALI Y CG + A +F
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-RDNY 88
+Y K G LK +F +I +V W +MI GY + + N +L++ D L+ + D
Sbjct: 1186 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 1245
Query: 89 TFPF---------------LFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
P KG T + G + K + V N L+ Y CG+ ++
Sbjct: 1246 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 1305
Query: 134 RGIF-YMSCEDDDGLHELIRIKA 155
+ +F +M +DD + +I + A
Sbjct: 1306 KKVFDWMEEKDDISWNSMIAVYA 1328
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M L++IH+ +K GL P + GD+ Y VF +I P++F WNT+I
Sbjct: 37 MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
+G+S+ + + + +++D+L S V+ T+P +FK + + + G + K +
Sbjct: 97 RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFY 138
F++N +I Y CG + FY
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFY 184
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 38/177 (21%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYL------------LLYEK--------------- 34
H Q+H + IKLGL P Y+ YE+
Sbjct: 142 HYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGL 201
Query: 35 ---GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
G++ K+F ++ + WN+MI GY R + + ++ + + ++ +T
Sbjct: 202 AKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMV 261
Query: 92 FLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS 140
L R I + K+ + V V ++I YC CG + A +F M+
Sbjct: 262 SLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMA 318
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
QLKQI +Q I GL+ + + + E +L Y K+ + P+VF WN +I+G
Sbjct: 68 QLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRG 127
Query: 62 YSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFK----------GFTRDIAGSLEKSCI 110
++ + G+++Y +L ++ R DNYT+ FLFK GF +I G + K
Sbjct: 128 CVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGF--EILGQVLKMGF 185
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+++ N +I GE +A +F C D
Sbjct: 186 DKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRD 219
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G+ KVF + + WN++I GY R + + +Y ++ V+ D T
Sbjct: 198 MLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVT 257
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R+I +E+S + +++ + NAL+ Y CG+++ + +F
Sbjct: 258 MIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLF 313
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQPSV 52
M QLKQ+H+ T++ P++ L LY K D+ Y +VF I S
Sbjct: 61 MSQLKQLHAFTLRTTY------PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 114
Query: 53 FLWNTMIKGYSRIDSHKNGVLM-YLDLL-KSDVRRDNYTFPFLFK------GFT--RDIA 102
F+WNT+I+ + S K M Y +L + + D +TFPF+ K GF+ + +
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 174
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K V+V N LI Y CG +D+AR +F
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H Q +K G + + LY G L KVF ++ + S+ WN+MI
Sbjct: 171 KQVHCQIVKHGFGGDVYV--NNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 228
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC---I 110
R + + + ++ ++ +S D YT + GSL + C +
Sbjct: 229 RFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAG--LGSLSLGTWAHAFLLRKCDVDV 285
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
M V V+N+LI YC CG + MA +F
Sbjct: 286 AMDVLVKNSLIEMYCKCGSLRMAEQVF 312
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI + I GL+T + + L + GD+++ +F +I P+ ++WNTMI
Sbjct: 171 MIQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMI 230
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---CIVMRV-- 114
+G+S G+ + +++ V D +F F K + +LE C + ++
Sbjct: 231 RGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKA-SEQFLTALEGESIHCAIWKIGF 289
Query: 115 ----FVQNALISTYCLCGEVDMARGIF 137
VQN LI Y + G + +AR +F
Sbjct: 290 PCALLVQNGLIHFYSVHGCLVLARKVF 316
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L KVF + V W +MI GYS D + + + ++ +L SDV + T +
Sbjct: 307 GCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVL 366
Query: 95 KGFTRDIAGSLEKSC--------IVMRVFVQNALISTYCLCGEVDMARGIF 137
++ SL KS + + V + NA++ Y CG + AR IF
Sbjct: 367 SACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIF 417
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
+ Q+KQI + G L P+ + + L + L + ++F + S F+WNT+
Sbjct: 23 ISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTV 82
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMRV-- 114
I+ ++ + + ++++ ++L S+ +NYT+ FLFK T ++ L C +++
Sbjct: 83 IRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGW 142
Query: 115 ----FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FVQN L+ + + G +D AR +F +S D
Sbjct: 143 EFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRD 176
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRK--ITQPSVFLWNTMIK 60
+LKQ+H +K G+ + +E L Y F++ T+ S++ NT+I+
Sbjct: 37 ELKQLHCNMLKKGVFNINKLIAACVQMGTHE--SLNYALNAFKEDEGTKCSLYTCNTLIR 94
Query: 61 GYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
GY+ K + +YL ++ + DN+TFPFL ++ +A G + K +V
Sbjct: 95 GYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLV 154
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI Y CG+VD+ R +F
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVF 180
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 31/238 (13%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
Q+H +K+GL+ + G + KVF ++ + +V W ++I GYS +
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYA-ACGKVDLGRKVFDEMLERNVVSWTSLINGYSVV 201
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-EKSCIVM-------RVFVQ 117
+ K V ++ ++++ V + T + L +K C +M V
Sbjct: 202 NMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVV 261
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLALPDT 177
NAL+ Y CG++ R IF + + ++ I V H L E LV +
Sbjct: 262 NALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQ---HGLAGEVLVVL------ 312
Query: 178 FMGEGLEVIPKSQAPREET--------PRVGNLEEGTPQEGRPHEHSQDDMSLISNSI 227
E++ K Q P + T ++G+L G + + + ISN+I
Sbjct: 313 -----DEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAI 365
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L G+L+ ++F ++ + ++ WNTMI + + + + ++ ++ D T
Sbjct: 400 LVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTM 459
Query: 91 PFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSC 141
+ + I +EK+ I + + + AL+ + CG+ A +F M
Sbjct: 460 VGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEK 519
Query: 142 EDDDGLHELIRIKAVDDDLH---ELFPEYLVQ 170
D IR+KAV+ + ELF E L Q
Sbjct: 520 RDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQ 551
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
L+QIH++ I+ GL ++ +L G + Y +F +I P F WN +I+
Sbjct: 42 HLRQIHAKIIRSGLSNDQLLTRKLIHLY-STHGRIAYAILLFYQIQNPCTFTWNLIIRAN 100
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ + +++Y +++ + D +TFPF+ K T + + GSL K V
Sbjct: 101 TINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDV 160
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FVQN LI Y CG A +F
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVF 183
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL+ ++F +I +V W MI GY R + + ++ + ++ + YT L
Sbjct: 205 GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLI 264
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K T R I K+CI + V++ ALI Y CG + A +F
Sbjct: 265 KACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-RDNY 88
+Y K G LK +F +I +V W +MI GY + + N +L++ D L+ + D
Sbjct: 2059 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 2118
Query: 89 TFPF---------------LFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
P KG T + G + K + V N L+ Y CG+ ++
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178
Query: 134 RGIF-YMSCEDDDGLHELIRIKA 155
+ +F +M +DD + +I + A
Sbjct: 2179 KKVFDWMEEKDDISWNSMIAVYA 2201
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L Q+H+ I+LG K + + + GD+ Y VF +I FLWNTMI
Sbjct: 68 LKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTMI 127
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
+G+ R Y +L+ + DN+TF FL K + + ++ K +
Sbjct: 128 RGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLD 187
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V+V+N LI Y +V++AR +F
Sbjct: 188 SHVYVRNTLIHMYGRLKDVNIARNLF 213
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 17/191 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H +KLGL H + + +Y + D+ +F ++ + + WN +I +
Sbjct: 175 KQLHVNILKLGL--DSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHV 232
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + +++ +L+S V D T + R + + + +
Sbjct: 233 SCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIA 292
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHE---LFPEYLVQM 171
V N+LI Y CG V+ AR +F +S ++ + +I A D + LF L +
Sbjct: 293 VFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAER 352
Query: 172 LALPD--TFMG 180
+ PD TF+
Sbjct: 353 VETPDGVTFLA 363
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + D+ Y ++ R +P+ F+WNT+I+
Sbjct: 46 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVSYAERLVRHHPRPNSFMWNTVIR 105
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
S + V +++D+L S + T P L + R + G K +
Sbjct: 106 ALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAG 165
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+V+NA I+ Y C D A +F
Sbjct: 166 DAYVRNATIAMYASCARADEALALF 190
>gi|224098349|ref|XP_002311155.1| predicted protein [Populus trichocarpa]
gi|222850975|gb|EEE88522.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 1 MHQLKQIHSQTIKLGL----LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
++ L QIH + GL LT H K YLL + Y +F + PSV L+N
Sbjct: 46 LNSLLQIHVRLTVSGLQNDHLTNAHLIKS--YLLFLK---CNYARFLFDSLPNPSVMLYN 100
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMR 113
++I+ YSR +H+ + +Y +L + D YTF F+ K T + G L I++R
Sbjct: 101 SIIRAYSRTKNHQEAINIYHCMLNKGLEPDKYTFTFVLKACTGALYFKEGILVHKDIIVR 160
Query: 114 -----VFVQNALISTYCLCGEVDMARGIF 137
F+ +L+ YC G++ +AR +F
Sbjct: 161 GLERDAFIGTSLVDMYCKMGDLKLARKVF 189
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
GDLK KVF K+ + V W+ MI G S+ + N V ++ ++ S V + + L
Sbjct: 180 GDLKLARKVFDKMPEKDVVAWSAMILGLSQSED-PNEVFGFIRSMQLSGVELNLVSILNL 238
Query: 94 FKGFTR--DI-AGSLEKSCIVMRVF---VQNALISTYCLCGEVDMARGIF-YMSCEDD 144
+R DI A ++ R F V N LI Y G +D+ R IF YM +DD
Sbjct: 239 VPAVSRLGDIDACRCIHGYVIRRGFDAIVSNGLIDMYSKSGNIDVGRQIFEYMPDKDD 296
>gi|41469497|gb|AAS07282.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 476
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + + D Y ++ R +P+ F+WNT I+
Sbjct: 1 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 60
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
+ V +++D+L S + TFP LF + R + G + K +
Sbjct: 61 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGG 120
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGL 147
+V+N++I+ Y G D A + CE D +
Sbjct: 121 DAYVRNSVIAMYASRGAADEAIALL-ARCEAFDAV 154
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M +LK+IH+ LG+ ++ K L L DL Y K+ + P+ F WNT+
Sbjct: 26 MFELKRIHALLFTLGI-SQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTL 84
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV---- 114
I+ +S + + +++ +L++ V D T+PFL K ++ + L + V V
Sbjct: 85 IRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGH 144
Query: 115 ----FVQNALISTYCLCGEVDMARGIF 137
F+QN+LI Y C ++ AR +F
Sbjct: 145 EIDKFIQNSLIHMYASCRDIASARKVF 171
>gi|108709982|gb|ABF97777.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 523
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + + D Y ++ R +P+ F+WNT I+
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 107
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
+ V +++D+L S + TFP LF + R + G + K +
Sbjct: 108 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGG 167
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGL 147
+V+N++I+ Y G D A + CE D +
Sbjct: 168 DAYVRNSVIAMYASRGAADEAIALL-ARCEAFDAV 201
>gi|218193370|gb|EEC75797.1| hypothetical protein OsI_12731 [Oryza sativa Indica Group]
Length = 523
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + + D Y ++ R +P+ F+WNT I+
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 107
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
+ V +++D+L S + TFP LF + R + G + K +
Sbjct: 108 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGG 167
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGL 147
+V+N++I+ Y G D A + CE D +
Sbjct: 168 DAYVRNSVIAMYASRGAADEAIALL-ARCEAFDAV 201
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQPSV 52
M QLKQ+H+ T++ P++ L LY K D+ Y +VF I S
Sbjct: 38 MSQLKQLHAFTLRTTY------PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 91
Query: 53 FLWNTMIKGYSRIDSHKNGVLM-YLDLL-KSDVRRDNYTFPFLFK------GFT--RDIA 102
F+WNT+I+ + S K M Y +L + + D +TFPF+ K GF+ + +
Sbjct: 92 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 151
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K V+V N LI Y CG +D+AR +F
Sbjct: 152 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 186
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+H Q +K G + +L G L KVF ++ + S+ WN+MI R
Sbjct: 148 KQVHCQIVKHGFGGDVYVNNGLIHLY-GSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC---IV 111
+ + + ++ ++ +S D YT + GSL + C +
Sbjct: 207 FGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAG--LGSLSLGTWAHAFLLRKCDVDVA 263
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
M V V+N+LI YC CG + MA +F
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVF 289
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK GL + K + +L D L Y VF I +P++ +WNTM
Sbjct: 15 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
+G++ + + +Y+ ++ + + YTFPFL K + I G + K
Sbjct: 75 FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 134
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ ++V +LIS Y G ++ AR +F S D
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 168
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
KG + K+F +I V WN MI GY+ ++K + ++ +++K++VR D T +
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 241
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ + + NALI Y CGEV+ A G+F
Sbjct: 242 VSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 293
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C +F ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 279 LYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 338
Query: 90 FPFLFKGFTRDIAGSLEKSCIVMRVFV-------------QNALISTYCLCGEVDMARGI 136
+ G++E + V++ + +LI Y CG+++ A+ +
Sbjct: 339 MLSILPACAH--LGAIEIGRWI-HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQV 395
Query: 137 F 137
F
Sbjct: 396 F 396
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 4 LKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEK-GDLKYECKVFRKIT----QPSVFLWNT 57
LKQIHS L+TK PH Q ++ Y K G L +F I S FLWNT
Sbjct: 53 LKQIHSALTTNSLITKSPHLAAQI--IIKYAKFGYLNCARSLFDGINIRGDNRSSFLWNT 110
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSC 109
MI+ Y+ + +Y+ + ++ V +NYTFPF+FK + G K+
Sbjct: 111 MIRAYANAGLCFETLELYMLMRRAGVSSNNYTFPFIFKACASNSLLLQGKVAHGDAVKAD 170
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
V+V+ AL+ Y CG+ R IF
Sbjct: 171 FDSDVYVKAALVDMYAKCGQFCDGRKIF 198
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H++ IKLGL + + + + +Y K + ++ KVF + + + LWN MI+GY+
Sbjct: 349 VHAEAIKLGLASNIYVG--SSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHN 406
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIVMR-----VFVQ 117
+ +++D+ S D++TF L + D+ GS S I+ + +FV
Sbjct: 407 GESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVG 466
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDDD 145
NAL+ Y CG ++ AR IF C+ D+
Sbjct: 467 NALVDMYAKCGALEDARQIFEHMCDRDN 494
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G LK +F ++ P V WN MI G+ + + +L++ KS V+ T +
Sbjct: 275 GKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVL 334
Query: 95 KGFTRDIAGSLEKSCIV----------MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
I +L+ +V ++V ++L+S Y C +++ A +F E +
Sbjct: 335 SAI--GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERN 392
Query: 145 DGL-HELIRIKAVDDDLHELFPEYL 168
D L + +IR A + + H++ ++
Sbjct: 393 DVLWNAMIRGYAHNGESHKVMELFM 417
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY--EKGDLKYECKVFRKITQPSVFLWNTM 58
++ LKQIH++ G H + ++++ ++ Y VF KI +P FLWNTM
Sbjct: 25 LNHLKQIHARIFLTGF---NHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTM 81
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
I+G+ +H + + + ++ R DN+TF F+ K R + SL K
Sbjct: 82 IRGFGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGF 141
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+V+N+LI Y + ++++A +F
Sbjct: 142 ENHTYVRNSLIHMYGMLKDIEIAHQLF 168
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++Q+KQIH+Q +K L + ++ + + VF +I P V L+NT+I+
Sbjct: 30 LNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCR-QMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVM 112
+ R ++ ++ S V DN+T+PFL K + I +EK +
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCL 148
Query: 113 RVFVQNALISTYCLCG--EVDMARGIFYMSCEDD 144
+FV N+LI +Y CG V AR +F + E D
Sbjct: 149 DIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERD 182
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 29 LLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
+L Y K GD+ +F K+ ++ W MI GY+ K+ + +Y + ++ ++ D+
Sbjct: 252 VLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDD 311
Query: 88 YTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
T + G + + S+E++ V NALI Y CG ++ A IF+
Sbjct: 312 GTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFH 370
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 28 YLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRD 86
+ + E DL Y + P+ F WN I+G+ ++ + V++Y +L+ D + D
Sbjct: 19 FCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPD 78
Query: 87 NYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
NYT+P LFK R +I G + +FV NA+I CG++D AR +F
Sbjct: 79 NYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFD 138
Query: 139 MSCEDD 144
SC D
Sbjct: 139 KSCVRD 144
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LL GDL K+F K + WN+MI GY R + Y ++ ++ D T
Sbjct: 123 LLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVT 182
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R+ +E++ + + V + NAL+ Y CG ++ AR +F
Sbjct: 183 MIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLKQ+H + I+ GL T + L G +KY VF ++ P VF WN MI+ +
Sbjct: 40 QLKQVHGKIIRFGL-TYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDVFTWNVMIRAF 98
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV-------- 114
+ S K +L++ +L D +T+PF+ A L + +
Sbjct: 99 TIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIKMGFWGDL 158
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+VQN +++ Y C VD R +F
Sbjct: 159 YVQNTMMNLYFKCENVDDGRKVF 181
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M +LK+IH+ LG+ ++ K L L DL Y K+ + P+ F WNT+
Sbjct: 26 MFELKRIHALLFTLGI-SQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTL 84
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV---- 114
I+ +S + + +++ +L++ V D T+PFL K ++ + L + V V
Sbjct: 85 IRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGH 144
Query: 115 ----FVQNALISTYCLCGEVDMARGIF 137
F+QN+LI Y C ++ AR +F
Sbjct: 145 EIDKFIQNSLIHMYASCRDIASARKVF 171
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
M QL+Q HSQ I+LGL + H P + D L Y K+F I QP FL+NT+
Sbjct: 35 MSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTI 94
Query: 59 IKGY--SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-----DIAGSLEKSCIV 111
IKG+ S++ + +L+Y +L++ V +N+TFP L + I L K
Sbjct: 95 IKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQHGMQIHAHLFKFGFG 154
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFY 138
N+LI Y ++ AR +F+
Sbjct: 155 AHSVCLNSLIHMYVTFQALEEARRVFH 181
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--GDLKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK GL + + L + L Y VF I +P++ +WNTM
Sbjct: 46 LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTM 105
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPFL K + I G + K
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV +LIS Y G ++ AR +F
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVF 192
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+G ++ K+F +I V WN MI GY+ ++K + ++ +++K+++R D T +
Sbjct: 213 RGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTV 272
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ + + N+L+ Y CGE++ A G+F
Sbjct: 273 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLF 324
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+L+ C +F + V WNT+I GY+ ++ +K +L++ ++L+S R ++ T
Sbjct: 310 LYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVT 369
Query: 90 FPFLFKG--------FTRDIAGSLEK--SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K ++ +LI Y CG+++ A +F
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVF 427
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQPSV 52
M QLKQ+H+ T++ P++ L LY K D+ Y +VF I S
Sbjct: 118 MSQLKQLHAFTLRTTY------PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 171
Query: 53 FLWNTMIKGYSRIDSHKNGVLM-YLDLL-KSDVRRDNYTFPFLFK------GFT--RDIA 102
F+WNT+I+ + S K M Y +L + + D +TFPF+ K GF+ + +
Sbjct: 172 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 231
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K V+V N LI Y CG +D+AR +F
Sbjct: 232 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 266
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+H Q +K G + +L G L KVF ++ + S+ WN+MI R
Sbjct: 228 KQVHCQIVKHGFGGDVYVNNGLIHLY-GSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 286
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC---IV 111
+ + + ++ ++ +S D YT + GSL + C +
Sbjct: 287 FGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAG--LGSLSLGTWAHAFLLRKCDVDVA 343
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
M V V+N+LI YC CG + MA +F
Sbjct: 344 MDVLVKNSLIEMYCKCGSLRMAEQVF 369
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++ QI+ IK GL P + G++ Y K+F ++ P+++ WNT+I+
Sbjct: 41 INHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIR 100
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
+SR + + + +++D+L S ++ T+P +FK + + + G + K +
Sbjct: 101 AFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQN 160
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
F+ N +I Y G + AR +F
Sbjct: 161 DQFICNTIIYMYANGGLMSEARRVF 185
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 3 QLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+ Q+H++ KLG + P + Y + + ++ Y +F P+ F +N MI+G
Sbjct: 40 EFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRG 99
Query: 62 YSRIDSHKNGV-LMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
Y++ + +N + L Y L ++ ++ TFPF+ K + + + G + K +
Sbjct: 100 YAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSE 159
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FVQN+LIS Y CG + A +F
Sbjct: 160 DLFVQNSLISMYSSCGLIGFACQVF 184
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H K GL Q + +Y G + + C+VF KI P V WN+MI G
Sbjct: 146 KQVHGLVFKHGL--SEDLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLV 203
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99
+ + G M+ + K R T+ L G+ +
Sbjct: 204 DLGFVEEGKQMFDRMSK----RSLVTWNCLIDGYVK 235
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 23/161 (14%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L ++H+ ++L L + Q +L G + + +VF ++ +P++ L N MIK Y+
Sbjct: 29 LLRVHAHAVRLSLSQSSYLATQIVHLC-NAHGRVAHATRVFSQVREPNLHLHNAMIKAYA 87
Query: 64 RIDSHKNGVLMYLDLLK-------SDVRRDNYTFPFLFKG--------FTRDIAGSLEKS 108
+ H + + +Y+ +L+ S D +T+PFL K + + G + +S
Sbjct: 88 QNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRS 147
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE 149
VQN+LI Y G++ +AR +F DG+ E
Sbjct: 148 GCESNAIVQNSLIEMYTRAGDLVLARKVF-------DGMQE 181
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCP---KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
M Q Q+H++ +K G H K + L GDL Y + R + P+ F +NT
Sbjct: 6 MTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYYNT 65
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSD------VRRDNYTFPFLFKG--------FTRDIAG 103
MI+ YS ++L + D R D++T+PF+ K F + I G
Sbjct: 66 MIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQIHG 125
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ KS + ++ NALI Y + GE ++A +F
Sbjct: 126 LVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVF 159
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD--LKYECKVFRKITQPSVFLWNTM 58
+ QLKQIH+ ++ L P Q L + C +F+ ++ ++F++N+M
Sbjct: 24 LSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACLIFQNLSLRNIFMYNSM 83
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR----- 113
I+GY S +L YLD+L + +NYTFP L K T + S C+V
Sbjct: 84 IRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTF 143
Query: 114 -----VFVQNALISTYCLCGEVDMARGIF 137
FV +ALI Y L ++ AR +F
Sbjct: 144 GFDEDPFVVSALIEFYSLNFDMGTARTLF 172
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 29 LLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY 88
LL DL Y +F ++ P +FLWNT+++ +S + ++ Y L V D +
Sbjct: 46 LLRSATKDLGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRH 105
Query: 89 TFPFLFKGFTR-------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141
TFP L K F++ + K + FVQN+L+S + CG VD +R +F +
Sbjct: 106 TFPLLLKAFSKLRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA 165
Query: 142 EDD 144
+ D
Sbjct: 166 KKD 168
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIK 60
L+ IH+Q IK GL + K + +L D L Y VF I +P++ +WNTM +
Sbjct: 2 SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVM 112
G++ + + +Y+ ++ + + YTFPFL K + I G + K +
Sbjct: 62 GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++V +LIS Y G ++ AR +F S D
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G ++ K+F +I V WN MI GY+ ++K + ++ D++K++VR D T
Sbjct: 166 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 225
Query: 93 LFKGFTRDIAGSLEKSCIV----------MRVFVQNALISTYCLCGEVDMARGIF 137
+ + +GS+E V + + NALI Y CGEV+ A G+F
Sbjct: 226 VVSACAQ--SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLF 278
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C +F ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 264 LYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 323
Query: 90 FPFLFKGFTR----DIAGSLEKSCIVMRVFVQNA------LISTYCLCGEVDMARGIF 137
+ DI + V NA LI Y CG+++ A+ +F
Sbjct: 324 MLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVF 381
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIK 60
L+ IH+Q IK GL + K + +L D L Y VF I +P++ +WNTM +
Sbjct: 2 SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVM 112
G++ + + +Y+ ++ + + YTFPFL K + I G + K +
Sbjct: 62 GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++V +LIS Y G ++ AR +F S D
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
KG + K+F +I V WN MI GY+ ++K + ++ +++K++VR D T +
Sbjct: 167 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 226
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ + + NALI Y CGEV+ A G+F
Sbjct: 227 VSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 278
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C +F ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 264 LYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 323
Query: 90 FPFLFKGFTRDIAGSLEKSCIVMRVFV-------------QNALISTYCLCGEVDMARGI 136
+ G++E + V++ + +LI Y CG+++ A+ +
Sbjct: 324 MLSILPACAH--LGAIEIGRWI-HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQV 380
Query: 137 F 137
F
Sbjct: 381 F 381
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----W 55
+ Q KQ+H+ I LG P PK + Y DL + IT+ S L W
Sbjct: 109 LSQGKQLHTLIISLGFEQHPIIVPKLVTF---YTNFDLLADAHT---ITENSNILHPLPW 162
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEK 107
N +I Y R H + Y + +R D +T+P + K F + + S+
Sbjct: 163 NLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINA 222
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
SC+ +FV N+L+S Y GE+ AR +F E DD
Sbjct: 223 SCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDD 260
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L++ +F+ ++ WN+M+ GY+ +D + ++ ++L S + + T +
Sbjct: 381 LRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPL 440
Query: 97 FTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
R ++ E C ++R + + N+L+ Y G+V A+ +F
Sbjct: 441 CARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLF 490
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M+QLKQIH+ +++ GL T++L+ L + DL Y C +F +I +PSV+L+N
Sbjct: 1 MNQLKQIHAYSLRNGL-------DHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKF 53
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
I+ +S I L+Y + + Y+F FLF + + KS
Sbjct: 54 IQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGF 113
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+F AL+ Y G + AR +F
Sbjct: 114 ASDMFAMTALLDMYAKLGMLRSARQLF 140
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++KQ H+Q I G P + +Y L ++++ KVF +++ VF WN +IK
Sbjct: 35 RIKQTHAQIIIGGHKQDPFIAAKLIDKYSQL-GGTNVEHARKVFDDLSERDVFCWNNVIK 93
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRD------IAGSLEKSCIVM 112
GY+ + + +Y + S + YT+PF+ K G RD I G++ K +
Sbjct: 94 GYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKCGLEF 153
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FV NA ++ Y C E++ +R +F
Sbjct: 154 DLFVGNAFVAFYAKCKEIEASRKVF 178
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH +K GL ++ Y K +++ KVF ++ + + WN+M+ GY
Sbjct: 142 IHGNVVKCGLEFDLFVGNA--FVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIAN 199
Query: 66 DSHKNGVLMYLDLLKSDVRR--DNYTFPFLFKGFTR--DIAGSLEKSCIVMRV------F 115
V+++ D+L+ D DN T + F DI C +++
Sbjct: 200 GYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPA 259
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V LI+ Y CG + MA+ +F
Sbjct: 260 VGCGLITLYSNCGYIRMAKAVF 281
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQPSV 52
M QLKQ+H+ T++ P + L LY K D+ Y +VF I S
Sbjct: 42 MSQLKQLHAFTLRTTY------PDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 95
Query: 53 FLWNTMIKGYSRIDSHK-NGVLMYLDLL-KSDVRRDNYTFPFLFK--GFTRDIAGSLEKS 108
F+WNT+I+ + S K ++Y +L + + D +TFPF+ K + ++ +
Sbjct: 96 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVH 155
Query: 109 CIVMR------VFVQNALISTYCLCGEVDMARGIF 137
C +++ V+V N LI Y CG +D+AR +F
Sbjct: 156 CQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVF 190
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+H Q +K G + + G L KVF ++ + S+ WN+MI R
Sbjct: 152 KQVHCQIVKHGFSGDVYVNNGLIHFY-GSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 210
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC---IV 111
+ + + + ++ D+ KS D YT + GSL ++C +
Sbjct: 211 VGEYDSALQLFRDMQKS-FEPDGYTMQSVLSACAG--LGSLSLGTWSHVFLLRNCDVDVA 267
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
M V ++N+LI YC CG + MA +F
Sbjct: 268 MDVLIKNSLIEMYCKCGSLRMAEQVF 293
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 18/145 (12%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
LKQIH+Q + + + KP+ +LL + + DL Y VF ++T+P+++ +N M++G
Sbjct: 49 LKQIHAQML-INSIPKPN------FLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRG 101
Query: 62 YSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV---- 114
+ + V +Y L ++ +N+T+PFLF G R + C+V +
Sbjct: 102 LATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDG 161
Query: 115 --FVQNALISTYCLCGEVDMARGIF 137
+V ++LI+ Y CGE+ AR +F
Sbjct: 162 DEYVNHSLITMYARCGEMGFARKVF 186
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ + KVF ++ + WN+MI GYS++ K + +++++ + D T +
Sbjct: 177 GEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVL 236
Query: 95 K--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G R + G + + + + ++ +ALI Y CG++ AR +F
Sbjct: 237 GACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVF 287
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL +VF + V WN +I GY++ + ++++ + ++ D T +
Sbjct: 278 GDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVL 337
Query: 95 KGFTRDIAGSLEKSC--------IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ A L K + V+V +ALI Y CG +D A +F
Sbjct: 338 SACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVF 388
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRK---ITQPSVFLWNTMIK 60
+Q+H I LG P PK + Y +L + V + I P F WN +I
Sbjct: 120 RQLHGHIISLGFEQHPILVPKLVTF---YSAFNLLVDAHVITENSNILHP--FPWNLLIS 174
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVM 112
Y R + + Y ++K +R DN+T+P + K GF +++ S+ S I
Sbjct: 175 SYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKW 234
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+ V NALIS Y CG+V +AR +F
Sbjct: 235 SLIVHNALISMYGKCGKVGIARDLF 259
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRK---ITQPSVFLWNTMIK 60
+Q+H I LG P PK + Y +L + V + I P F WN +I
Sbjct: 194 RQLHGHIISLGFEQHPILVPKLVTF---YSAFNLLVDAHVITENSNILHP--FPWNLLIS 248
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVM 112
Y R + + Y ++K +R DN+T+P + K GF +++ S+ S I
Sbjct: 249 SYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKW 308
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+ V NALIS Y CG+V +AR +F
Sbjct: 309 SLIVHNALISMYGKCGKVGIARDLF 333
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K+IHS I+ + K + + DLK+ +F+ + S+ WN++I G
Sbjct: 431 KEIHSFAIR-SCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCH 489
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR-------VF 115
+D + + ++L S + + T + R ++ E C + R +
Sbjct: 490 MDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLL 549
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ NAL+ Y G+V AR +F M E D
Sbjct: 550 LWNALVDMYARSGKVLEARRVFDMLGERD 578
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ + KQ+H+ + G+L P +T+ L LY K G L F +T+ VF WN MI
Sbjct: 27 LAEAKQVHAHMLLTGILRIP--SVETKLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMI 84
Query: 60 KGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAGS---------LEKSC 109
GY + + + +Y + K S DNYT+ + R + S + K C
Sbjct: 85 GGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGC 144
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
M V V+NALI+ + CG ++ AR +F CE
Sbjct: 145 -EMDVIVENALINMFMKCGSIEDARRVFDKMCE 176
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--- 98
+VF K+ + ++ W M+ GY++ + M+ ++ DV+ + T +
Sbjct: 169 RVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLS 228
Query: 99 -----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++I G + + + + + V NALI Y CG + A+ +F
Sbjct: 229 DLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVF 272
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L +IH+ I LGL + P + + L GD+ Y K K++ P + WN +I
Sbjct: 21 MSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----RDIAGSLE----KSCIV 111
+G+S + + + +Y+ +L+ + D+ T+PFL K + R + GSL KS +
Sbjct: 81 RGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLE 140
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+F+ N LI Y + AR +F
Sbjct: 141 WDLFICNTLIHMYGSFRDQASARKLF 166
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 39 YECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98
Y +F T+P ++L+NT+IK S + +L+Y +L SD+R D Y+ PF+ K
Sbjct: 91 YSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVV 150
Query: 99 RDIAGSLEK--------SCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHEL 150
R +A + + + +V + V ALI Y CG V AR +F C D
Sbjct: 151 RLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNA 210
Query: 151 I-----RIKAVDDDLH--ELFPE 166
+ ++ VD+ H E PE
Sbjct: 211 MVAGYAKVGDVDNARHLFERMPE 233
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 38/175 (21%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-------------CPKQTRYLL----------------L 31
+H +QIH Q I GL++ H C + R L
Sbjct: 155 IHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAG 214
Query: 32 YEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
Y K GD+ +F ++ + +V W +I GY+++D + M+ + +V D
Sbjct: 215 YAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAM 274
Query: 91 PFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I ++K + V + NALI Y CG+++ A +F
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVF 329
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLT-KPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI SQ ++GL + K + G+L+Y K+F + PS+F++N M+
Sbjct: 156 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 215
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRD------IAGSLEKSCIV 111
K Y++ + +L++ L + + D +T+PF+ K G RD + G + K+ +
Sbjct: 216 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 275
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +V N+LI Y V+ A+ +F
Sbjct: 276 LDNYVYNSLIDMYYELSNVENAKKLF 301
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL+ +F K V LW MI GY + + V ++ ++ V+ D +T L
Sbjct: 424 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLL 483
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
G + I G L+++ I M V V ALI Y CG VD + IFY ED D
Sbjct: 484 TGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFY-ELEDKD 541
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK IH++ + L K R+ + G L Y ++F +I QP+ F +NT+I
Sbjct: 254 MQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 313
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR------------DIAGSLEK 107
+GYS+ S V ++ + ++ V D +TF FL KG +R +I G++ K
Sbjct: 314 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 373
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV NALI Y G A +F
Sbjct: 374 LGFCFHLFVMNALIHLYAARGVPAAAHQVF 403
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK IH++ + L K R+ + G L Y ++F +I QP+ F +NT+I
Sbjct: 100 MQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 159
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99
+GYS+ S V ++ + ++ V D +TF FL KG +R
Sbjct: 160 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSR 199
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ +VF ++ + V W M+ GY++ + + ++ ++ VR D +
Sbjct: 425 GELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVI 484
Query: 95 KGFTRDIAGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIF 137
T G LE V R V + NALI Y CG +D+A +F
Sbjct: 485 SACTS--LGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVF 535
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLKQIH++ IK L +Q + G+ +Y VF ++ PS F WN MI+
Sbjct: 35 QLKQIHTKIIKHNLTNDQLLVRQL-ISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSL 93
Query: 63 SRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKG--------FTRDIAGSLEKSCIVMR 113
S + +L+++ ++ S + D +TFPF+ K + G K+
Sbjct: 94 SVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFND 153
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
VF QN L+ Y CG+ D R +F
Sbjct: 154 VFFQNTLMDLYFKCGKPDSGRKVF 177
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 39 YECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98
Y +F T+P ++L+NT+IK S + +L+Y +L SD+R D Y+ PF+ K
Sbjct: 91 YSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVV 150
Query: 99 RDIAGSLEK--------SCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHEL 150
R +A + + + +V + V ALI Y CG V AR +F C D
Sbjct: 151 RLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNA 210
Query: 151 I-----RIKAVDDDLH--ELFPE 166
+ ++ VD+ H E PE
Sbjct: 211 MVAGYAKVGDVDNARHLFERMPE 233
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 38/175 (21%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-------------CPKQTRYLL----------------L 31
+H +QIH Q I GL++ H C + R L
Sbjct: 155 IHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAG 214
Query: 32 YEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
Y K GD+ +F ++ + +V W +I GY+++D + M+ + +V D
Sbjct: 215 YAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAM 274
Query: 91 PFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I ++K + V + NALI Y CG+++ A +F
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVF 329
>gi|357461849|ref|XP_003601206.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
gi|355490254|gb|AES71457.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
Length = 553
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++KQ+H+ +K L P Q L + + Y VF K + SVFLWN+MI+ +
Sbjct: 21 RVKQLHACLLKTHLSKDPFYATQIIRLYAFNN-HINYAHHVFDKTSTRSVFLWNSMIRAF 79
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRV 114
++ N + ++ +L D+R DNYT+ + G R + GS + +
Sbjct: 80 AKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGSAVSVGLGLDP 139
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+AL+S Y G V AR +F
Sbjct: 140 ICCSALVSAYSKLGVVHEARRVF 162
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGY 62
L+ +H + +GL P C + + Y K + +E + VF I +P + LWN++I Y
Sbjct: 123 LRVVHGSAVSVGLGLDPICC--SALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAY 180
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ G+ M+ + + + D +T L G +++ G +KS +
Sbjct: 181 GGSGMWEIGIQMFSSMRLAGKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDC 240
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V + L+S Y C +D A +F
Sbjct: 241 HVGSLLVSMYSRCKCIDSAYRVF 263
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ K+F K P VFLWN +++ YSR + + MY + + V D ++FP +
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVL 180
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + R + G + + VFVQN L++ Y CGE+ A +F
Sbjct: 181 KACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVF 231
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 37/155 (23%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-------VFRKITQPSVFLWNT 57
K IH IK+GL + + LL L +C F ++ PS+ WN
Sbjct: 294 KSIHGCVIKMGL--------ECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNA 345
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA-----GSLEKS---- 108
MI GY + + + ++ + ++R D+ T T IA GSLE +
Sbjct: 346 MISGYVKNGYAEEAIELFRLMKSKNIRPDSITV-------TSSIAACAQIGSLELARWMD 398
Query: 109 -CIVMR-----VFVQNALISTYCLCGEVDMARGIF 137
I M V V +LI TY CG VDMAR +F
Sbjct: 399 EYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVF 433
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H Q + G + Q + LY K G++ VF ++ ++ W ++I GY+
Sbjct: 193 RRVHGQIFRHGFESDVFV--QNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYA 250
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ ++ K++VR D + + +T + I G + K +
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L S Y CG V +AR F
Sbjct: 311 LLISLTSLYAKCGHVMVARLFF 332
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQ---TRYLLLY----EKGDLKYECKVFRKITQPSVFLWN 56
LKQIH+ I GL + ++ T + + ++Y ++F +I QP F+WN
Sbjct: 17 LKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWN 76
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKS 108
T I+G S+ + V +Y + + V+ DN+TFPF+ K T+ + G + +
Sbjct: 77 TYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRL 136
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
V V+N L+ + CG++ +A IF
Sbjct: 137 GFGSNVVVRNTLLVFHAKCGDLKVATDIF 165
>gi|225425734|ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Vitis vinifera]
Length = 597
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ Q+H +K GL+ P + LL D Y +F +I P++F++NTM++GY
Sbjct: 46 EICQVHGSMVKTGLVNVPFTLSK---LLASSIQDTDYAASIFNQIPSPNLFMFNTMLRGY 102
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRV 114
S K +++ L + D ++F K R++A G + +S +
Sbjct: 103 SISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHGVVVRSGHGLFT 162
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V+NAL+ YC+CG + A +F
Sbjct: 163 NVKNALLHFYCVCGRIGDAHQLF 185
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H IK+G + + T + +Y G + K+F ++ + V LWN +I GY++
Sbjct: 250 SLHGHCIKVGFCSDLNVA--TALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAK 307
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRVFV 116
D + + + + + V+ ++ T L I+ +E+ I + +
Sbjct: 308 SDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVL 367
Query: 117 QNALISTYCLCGEVDMARGIF 137
AL+ YC CG ++ A +F
Sbjct: 368 GTALVDMYCKCGFLEKAIDVF 388
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEK---GDLKYECKVFRKITQPSVFLW 55
M LKQI +Q ++ G H T ++++ G+L Y ++F I P +F++
Sbjct: 45 MQHLKQIQTQILRTGF----HQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIY 100
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEK 107
N +IK +++ S + VL++ L + + DN+T+PF+FK G R+ + G + K
Sbjct: 101 NLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVK 160
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
S + +V N+L+ Y G V R +F
Sbjct: 161 SGLEFDTYVCNSLMDMYAEVGRVQNLRQVF 190
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 17/155 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
LKQIH+ IK G + P + ++L L + ++KY K F +I P+ F WNT+I+
Sbjct: 30 HLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRA 89
Query: 62 YSRIDS----HKNGV--LMYLDLLKSD--VRRDNYTFPFLFKGFT--------RDIAGSL 105
+ D H N + L+Y + +D V + +TFP + K + + G +
Sbjct: 90 LADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFV 149
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS 140
K +V FV++ L+ Y +CG + A +FY +
Sbjct: 150 VKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQT 184
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL+ ++F + SV WN MI G ++ K + M+ D+ DV + T +
Sbjct: 204 GDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVL 263
Query: 95 KGFTRDIAGSL--------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+R A L EK+ I + + +ALI Y CG +D A +F
Sbjct: 264 PAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVF 314
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ Q+H +K GL+ P + LL D Y +F +I P++F++NTM++GY
Sbjct: 46 EICQVHGSMVKTGLVNVPFTLSK---LLASSIQDTDYAASIFNQIPSPNLFMFNTMLRGY 102
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRV 114
S K +++ L + D ++F K R++A G + +S +
Sbjct: 103 SISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHGVVVRSGHGLFT 162
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V+NAL+ YC+CG + A +F
Sbjct: 163 NVKNALLHFYCVCGRIGDAHQLF 185
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD- 100
K+F ++ + V LWN +I GY++ D + + + + + V+ ++ T L
Sbjct: 246 KIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAG 305
Query: 101 -------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I+ +E+ I + + AL+ YC CG ++ A +F
Sbjct: 306 ASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVF 349
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNT 57
M QLK+ H+Q + GL T +R L G L + K+F++I P++ + NT
Sbjct: 18 MKQLKEAHAQVLTCGLGTDSF--ALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNT 75
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSC 109
MIK + N + +Y +L++ + DNYT P++ K G K
Sbjct: 76 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 135
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV N LI+ Y G V AR IF
Sbjct: 136 FWFDIFVGNTLIAMYSSFGNVRAARCIF 163
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEK---GDLKYECKVFRKITQPSVFLW 55
M LKQI +Q ++ G H T ++++ G+L Y ++F I P +F++
Sbjct: 45 MQHLKQIQTQILRTGF----HQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIY 100
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEK 107
N +IK +++ S + VL++ L + + DN+T+PF+FK G R+ + G + K
Sbjct: 101 NLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVK 160
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
S + +V N+L+ Y G V R +F
Sbjct: 161 SGLEFDTYVCNSLMDMYAEVGRVQNLRQVF 190
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L ++F + V LW MI GY + + + V ++ ++ V D +T L
Sbjct: 313 GQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALL 372
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
G + I G ++++ I++ V ALI Y CG ++ + IF E D
Sbjct: 373 TGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTA 432
Query: 147 LHELI----RIKAVDDDLHELFPEYLVQMLALPD--TFMG 180
I + ELF E +VQ PD TF+G
Sbjct: 433 SWTSIICGLAMNGKTSKALELFAE-MVQTGVKPDDITFIG 471
>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730
gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana]
gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]
Length = 565
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QL IH +I G + L L ++GD+K+ K+F +I++ V W MI +
Sbjct: 31 QLLLIHGNSITNGFCSNLQLKDMLIDLYL-KQGDVKHARKLFDRISKRDVVSWTAMISRF 89
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVMRV 114
SR H + +L++ ++ + DV+ + +T+ + K G ++ I GS+EK +
Sbjct: 90 SRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNL 149
Query: 115 FVQNALISTYCLCGEVDMAR 134
V++AL+S Y CG+++ AR
Sbjct: 150 IVRSALLSLYARCGKMEEAR 169
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G+ + KVF K+ + VF WN M+ GY + + + +Y +L + R D YT
Sbjct: 138 MLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYT 197
Query: 90 FPFLFK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
FP + + G D+ E V+R V V NAL++ Y CG+V+ AR +F
Sbjct: 198 FPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVF 253
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ QL Q+H+ I L P T+ + Y + GDL+ VFR P F+W ++
Sbjct: 14 LRQLAQLHAHIIVTALHNDP--LPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLL 71
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
K + ++ + +Y +L ++ ++YTFP + + G + + G + KS
Sbjct: 72 KSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFD 131
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
M V AL+S Y G +D AR +F
Sbjct: 132 MDPVVNTALLSVYGELGYLDSARKVF 157
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLT-KPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI SQ ++GL + K + G+L+Y K+F + PS+F++N M+
Sbjct: 110 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 169
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRD------IAGSLEKSCIV 111
K Y++ + +L++ L + + D +T+PF+ K G RD + G + K+ +
Sbjct: 170 KIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 229
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +V N+LI Y V+ A+ +F
Sbjct: 230 LDNYVYNSLIDMYYELSNVENAKKLF 255
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL+ +F K V LW MI GY + + V ++ ++ ++ D +T L
Sbjct: 378 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLL 437
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
G + I G L+++ I M V V ALI Y CG VD + IFY ED D
Sbjct: 438 TGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFY-ELEDKD 495
>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana]
gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 564
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QL IH +I G + L L ++GD+K+ K+F +I++ V W MI +
Sbjct: 30 QLLLIHGNSITNGFCSNLQLKDMLIDLYL-KQGDVKHARKLFDRISKRDVVSWTAMISRF 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVMRV 114
SR H + +L++ ++ + DV+ + +T+ + K G ++ I GS+EK +
Sbjct: 89 SRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNL 148
Query: 115 FVQNALISTYCLCGEVDMAR 134
V++AL+S Y CG+++ AR
Sbjct: 149 IVRSALLSLYARCGKMEEAR 168
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG--DLKYECKVFRKITQPSVFLWNTMIK 60
KQ+ SQTI GL+T P+ + + Y ++F + P+ F WNT+++
Sbjct: 18 HFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMR 77
Query: 61 GYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFL----------FKGFTRDIAGSLEKSC 109
+ + +S +L Y L S + D+YT+P L F+G R + S
Sbjct: 78 AHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEG--RQLHAHAVSSG 135
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
V+V+N L++ Y +CG V AR +F
Sbjct: 136 FDGDVYVRNTLMNLYAVCGSVGSARRVF 163
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE--KGDLKYECKVFRKITQPSVFLWNTM 58
+ QLKQI S L P+ + L + + L Y ++F + S F+WNTM
Sbjct: 24 ISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTM 83
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIA----GSLEKSCI 110
++ + + +Y +L+S+ +N+TF F+ + F + G + K
Sbjct: 84 MQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGW 143
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FVQN LI Y CG +D+AR +F MS + D
Sbjct: 144 ESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRD 177
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H++ IKLGL + + + + +Y K + ++ KVF + + + WN MI+GY+
Sbjct: 349 VHAEAIKLGLASNIYVG--SSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHN 406
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIVMR-----VFVQ 117
+ +++D+ S D++TF L + D+ GS S I+ + +FV
Sbjct: 407 GESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVG 466
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDDD 145
NAL+ Y CG ++ AR IF C+ D+
Sbjct: 467 NALVDMYAKCGALEDARQIFERMCDRDN 494
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G LK +F +++ P V WN MI G+ + + + ++ KS V+ T +
Sbjct: 275 GKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVL 334
Query: 95 KGFTRDIAGSLEKSCIV----------MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
I +L+ +V ++V ++L+S Y C +++ A +F E +
Sbjct: 335 SAI--GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKN 392
Query: 145 DGL-HELIRIKAVDDDLHELFPEYL 168
D + +IR A + + H++ ++
Sbjct: 393 DVFWNAMIRGYAHNGESHKVMELFM 417
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS+++ LG+ ++ + LY K + Y K F + V WN+M+ YS
Sbjct: 80 KAVHSKSLILGIDSEGRLGNAI--VDLYAKCAQVSYAEKQF-DFLEKDVTAWNSMLSMYS 136
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
I + ++ L ++ + + +TF + F R I S+ K + +
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 116 VQNALISTYCLCGEVDMARGIF 137
AL+ Y C + AR +F
Sbjct: 197 CGGALVDMYAKCDRISDARRVF 218
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
++Q KQ+H ++K GL H + + +Y K G +K KVF + + SV N +I
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLH--TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALI 602
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
GYS+ ++ + V+++ ++L V TF
Sbjct: 603 AGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFA 633
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWN 56
+ +KQ+H+ G L+ P + R LL +G + + VF +I +P F++N
Sbjct: 21 LRHIKQMHAVMALRGFLSDP---SELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYN 77
Query: 57 TMIKGYSRIDSHKNGVLMYLDLL----KSDVRRDNYTFPFLFKGFTRDIAGS-------- 104
T+I+G + + ++ V +Y +L VR D TFPF+ + T AG
Sbjct: 78 TLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAH 137
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K+ FV+NALI + CG + +A +F +D
Sbjct: 138 VVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 177
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++GD+ ++F ++ + V WN MI GY R SH + + ++ + + + D T
Sbjct: 221 KRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 280
Query: 93 LFKGFTR----DIAGSLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142
L D+ L S M V + NALI Y CG + A +F+ S
Sbjct: 281 LLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFW-SMR 339
Query: 143 DDD 145
D D
Sbjct: 340 DKD 342
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 21/146 (14%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL------YEKGDLKYECKVFRKITQPSVFLWN 56
+LKQIH+Q I G Q +LL+ G+L KVF +I PS +WN
Sbjct: 49 KLKQIHTQIIVNGF-------SQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWN 101
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKS 108
MI+G+S+ ++ V +Y +++++ + +T+ FL G R + G + +
Sbjct: 102 QMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVAN 161
Query: 109 CIVMRVFVQNALISTYCLCGEVDMAR 134
VFV+ +L++ Y + G D R
Sbjct: 162 GYCTNVFVRTSLVNLYAIAGGYDGVR 187
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++Q+KQIH+Q +K L + ++ + + VF +I P V L+NT+I+
Sbjct: 30 LNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCR-QMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVM 112
+ R ++ ++ S V DN+T+PFL K + I +EK +
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCL 148
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FV N+LI +Y GE+ AR +F
Sbjct: 149 DIFVPNSLIDSYFKLGELGEARRLF 173
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 1 MHQLKQIHSQTIKLGL---------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQP 50
+ +LK H K GL L C TR L + K +VF +
Sbjct: 45 IDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAK-------EVFENSESYG 97
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIA 102
+ F++N++I+GY+ +L++L ++ S + D YTFPF KG I
Sbjct: 98 TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + K +FVQN+L+ Y CGE+D AR +F
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
QIH +K+G K + + E G+L KVF ++++ +V W +MI GY+R
Sbjct: 155 QIHGLIVKMGY-AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 66 DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
D K+ V ++ +++ +V ++ T + + + + S I + +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C +D+A+ +F
Sbjct: 274 VSALVDMYMKCNAIDVAKRLF 294
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK GL + K + +L D L Y VF I +P++ +WNTM
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPFL K + I G + K
Sbjct: 63 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++V +LIS Y G ++ A +F
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVF 149
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+G ++ K+F +I V WN MI GY+ ++K + ++ D++K++VR D T +
Sbjct: 170 RGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 229
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ + + NALI Y CGE++ A G+F
Sbjct: 230 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 281
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+L+ C +F + V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 267 LYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 326
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 327 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVF 384
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFL 54
+ LK IH+ ++LGL + YLL + G+ Y ++ + +P++FL
Sbjct: 23 LKHLKHIHAALLRLGL-------DEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE-------- 106
+NTMI+G D + + +Y + K + D++TFPF+ K R + L
Sbjct: 76 FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K+ FV+ +LI+ Y CG +D A +F
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVF 166
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++HS +K G + + + LY K G + KVF I + W I GY
Sbjct: 129 KMHSLVVKAG--CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVG 186
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRVFV 116
+ + + M+ LL+ +R D+++ + R I + ++ +V VFV
Sbjct: 187 VGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFV 246
Query: 117 QNALISTYCLCGEVDMARGIF 137
AL+ Y CG ++ AR +F
Sbjct: 247 ATALVDFYGKCGNMERARSVF 267
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 3 QLKQIHSQTIKLGL---------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSV 52
+LK H K GL L C TR L + K +VF + +
Sbjct: 47 ELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAK-------EVFENSESYGTC 99
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGS 104
F++N++I+GY+ +L++L ++ S + D YTFPF KG I G
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K +FVQN+L+ Y CGE+D AR +F
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
QIH +K+G K + + E G+L KVF ++++ +V W +MI GY+R
Sbjct: 155 QIHGLIVKMGY-AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 66 DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
D K+ V ++ +++ +V ++ T + + + + S I + +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C +D+A+ +F
Sbjct: 274 VSALVDMYMKCNAIDVAKRLF 294
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI ++ G++T + + L GDL Y +F ++ QP+ F+WNTMI
Sbjct: 170 MRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMI 229
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---FTRDIAGSLEKSCIVMR--- 113
+GY ++ + + V D+ +F F K F G C+V +
Sbjct: 230 RGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGE-SVYCVVWKMGF 288
Query: 114 ---VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ V+N LI Y G + AR +F S + D
Sbjct: 289 DCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL+ + F + + + W+ MI GYS+ + K + ++ ++++ V +T +
Sbjct: 438 GDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVL 497
Query: 95 KGFTR----DIAGSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
+ ++ + + +V + V ++NA++ Y CG +D A +F
Sbjct: 498 SACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVF 549
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 41/180 (22%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLL------YEKGDLKYECKVFRKITQPSVFL 54
+ +LKQIH+Q I G Q +LL+ G+L KVF +I PS +
Sbjct: 31 IKKLKQIHTQIIVNGF-------SQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTV 83
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLE 106
WN MI+G+S+ ++ V +Y +++++ + +T+ FL G R + G +
Sbjct: 84 WNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVV 143
Query: 107 KSCIVMRVFVQNALISTYCLCGEVD---MARGIF-----------------YMSCEDDDG 146
+ VFV+ +L++ Y + G D AR +F Y+ C D DG
Sbjct: 144 ANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDG 203
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q H+ IK G + + G++ Y VF ++ P++F WNT+I+
Sbjct: 37 MRDLQQFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIR 96
Query: 61 GYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
G+S+ + + + +++D+L S V T+P +FK +++ + G + K +
Sbjct: 97 GFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQ 156
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
F++N ++ Y G + AR IF E D
Sbjct: 157 FDPFIRNTILYMYATGGFLSEARRIFNQEMEFD 189
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 38/174 (21%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLL------------------------------L 31
H Q+H + IKLGL P Y+ L
Sbjct: 141 HDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGL 200
Query: 32 YEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
+ G++ K+F K+ + WN+MI GY R K + +++ + + ++ +T
Sbjct: 201 AKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMV 260
Query: 92 FLFK-----GFTRD---IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L G R I ++K+ + + V A+I YC CG + A +F
Sbjct: 261 SLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVF 314
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H + + GL P T+ + LY G + + ++F + + +VFLWN +I+ Y+
Sbjct: 82 RQLHGRLLVSGL--GPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYA 139
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R + V +Y +++ V DN+T+P + K R++ + + VF
Sbjct: 140 REGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVF 199
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++ Y CG VD AR +F
Sbjct: 200 VCAGVVDMYAKCGCVDDARAVF 221
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 17/154 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQIH+ ++ GL K R+ + GDL Y ++F ++ P+ F +NT+I
Sbjct: 8 MSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLI 67
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----------------DIAG 103
+GY++ + + + ++ V D +TF FL K +R +I G
Sbjct: 68 RGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHG 127
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ K +FV+NALI Y G +A +F
Sbjct: 128 AVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVF 161
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G+L+ VF ++ + V W TM+ YS+ + + +Y+ +L VR D T +
Sbjct: 182 AGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSV 241
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T + ++++ V + NALI Y CG +D A +F
Sbjct: 242 ISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVF 293
>gi|15239985|ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g43790
gi|10177948|dbj|BAB11307.1| unnamed protein product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ LKQIH+Q I +GL H ++ L L L Y + R+I PSVFL+NT+I
Sbjct: 22 LQNLKQIHAQIITIGL--SHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLI- 78
Query: 61 GYSRIDSHKNGVLMYLDLLKSD---------VRRDNYTFPFLFKGFTRDIAGSLEKSCIV 111
S I S+ N +L D VR + +T+P LFK D +
Sbjct: 79 --SSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALH 136
Query: 112 MRV-----------FVQNALISTYCLCGEVDMARGIF 137
V FVQ AL+ Y CG++ AR +F
Sbjct: 137 AHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLF 173
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LKQ+H+Q IK + P + R+ + + DL Y K+FR + +P+ F +NT+I
Sbjct: 1 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGF--------TRDIAGSLEKSCI 110
+ S + + +L+++++++ V + +TFP +FK R + G K +
Sbjct: 61 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 120
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD--DGLHELIRIKAVDDDL 160
FV + ++ Y CG ++ A +FY D DG+ + + + VD D+
Sbjct: 121 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRD--KKRRVDGDV 170
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ +F ++ Q SV WN MI GY++ K V ++ ++ ++V + T +
Sbjct: 184 GELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 243
Query: 95 KGFTRDIAGSLEKSCIVMRVFVQN----------ALISTYCLCGEVDMARGIF 137
+R G+LE V V+N ALI Y CG ++ A +F
Sbjct: 244 PAMSR--LGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVF 294
>gi|255549932|ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544922|gb|EEF46437.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGY 62
KQ+H+ +GL + PK LY + E ++ F KI + ++FLWN +I+GY
Sbjct: 107 KQLHASLCHVGLQFDRVLAPKLVN---LYCICNSLCEARLLFDKIPKRNLFLWNVLIRGY 163
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ ++ + +Y + + DN+TFPF+ K + R I + +S V
Sbjct: 164 AWYGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMRSGWERDV 223
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
FV ALI Y CG VD AR +F+
Sbjct: 224 FVGAALIDMYSKCGCVDNAREVFH 247
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q+H+ +IK L P +R L LY +L+Y +F I +P++ WN +I
Sbjct: 30 EANQLHALSIKTASLNHPSV--SSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLI 87
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
K Y + + ++ LL D D++T P + KG R I G + K
Sbjct: 88 KCYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFG 146
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV ++L+S Y CGE+++ R +F
Sbjct: 147 VDKFVLSSLVSMYSKCGEIELCRKVF 172
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ + KQIH +K+G + + +Y K G+++ KVF ++ V WN++I
Sbjct: 130 LQEGKQIHGLVLKIGFGVDKFV--LSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLI 187
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM------R 113
GY+R + + L++ + +D++++ L G ++ +G LE + V
Sbjct: 188 DGYARCGE----IELALEMFEEMPEKDSFSWTILIDGLSK--SGKLEAARDVFDRMPIRN 241
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
NA+I+ Y G+ + A+ +F
Sbjct: 242 SVSWNAMINGYMKAGDSNTAKELF 265
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDL-----KYECKVFRKITQPSVFL 54
+HQ KQ H ++LGL Q YL+ L + L +Y VF + P++FL
Sbjct: 16 LHQAKQCHCLLLRLGL-------HQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFL 68
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-----DIAGSLE--- 106
+NT+I+G D+ ++ V +Y + + DN+TFPF+ K TR + SL
Sbjct: 69 YNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLV 128
Query: 107 -KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K+ VFV+ L+ Y G + AR +F
Sbjct: 129 IKTGFDWDVFVKTGLVCLYSKNGFLTDARKVF 160
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
H +HS IK G +T + LY K G L KVF +I + +V W +I
Sbjct: 118 FHVGLSLHSLVIKTGFDWDVFV--KTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAII 175
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIA------GSLEKSCIV 111
GY + ++ LL+ +R D++T + +R D+A G + +S V
Sbjct: 176 CGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSV 235
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFV +L+ Y CG ++ AR +F E D
Sbjct: 236 GNVFVATSLVDMYAKCGSMEEARRVFDGMVEKD 268
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G ++ +VF + + V W+ +I+GY+ K + ++ ++ + +VR D Y
Sbjct: 247 MYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYA 306
Query: 90 FPFLFKGFTRDIA---GSLEKSCIVMRVFVQN-----ALISTYCLCGEVDMARGIF 137
+F +R A G+ + + F+ N ALI Y CG V A+ +F
Sbjct: 307 MVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVF 362
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLK+IH+ I+ G K Q L+ GD+ Y +VF ++ +P +FLWNT+ KGY
Sbjct: 26 QLKKIHAVVIRTGFSEKNSLLTQLLENLVL-VGDMCYARQVFDEMPKPRIFLWNTLFKGY 84
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99
R VL+Y + VR D +T+PF+ K ++
Sbjct: 85 VRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQ 121
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP-SVFLWNTMIKGY 62
K IHS+ + G + T L +Y K G+L VF ++ Q +V+ W MI Y
Sbjct: 364 KAIHSRVFECGFQS---LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAY 420
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRV 114
++ + + +Y ++ R + YTF + + I G +E S + V
Sbjct: 421 AQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNV 480
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VQNAL++ Y CG +++A+ F S D
Sbjct: 481 AVQNALVTMYAKCGSLELAKSAFEASGRKD 510
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ + ++IH+ I+ + + + Q + +Y K G ++ KVF I W +MI
Sbjct: 160 LREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMI 219
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----F 115
Y+ + +Y + ++ D+ TF T+ + G + IV F
Sbjct: 220 SSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDF 279
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +ALI+ Y CG+V AR F
Sbjct: 280 VGSALINMYARCGDVSSARQAF 301
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ + F KI V W +++ Y + ++ + +Y + V D T+
Sbjct: 292 GDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTAL 351
Query: 95 KGFTRDIAGSLEKSCIVMRVF--------VQNALISTYCLCGEVDMARGIF 137
G + E I RVF V AL++ Y CGE+D AR +F
Sbjct: 352 -GACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVF 401
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 15 GLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVL 73
GL+ P + + L E L Y K+ + I P+ F WN I+G+S ++ K+ VL
Sbjct: 5 GLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVL 64
Query: 74 MYLDLLK---SDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALIS 122
Y +L+ + R D++T+P LFK I G + K + + V NA I
Sbjct: 65 AYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIH 124
Query: 123 TYCLCGEVDMARGIF 137
+ CGE++ AR +F
Sbjct: 125 MFASCGEMENARKVF 139
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ KVF + + WN +I GY +I + + +Y + V+ D+ T L
Sbjct: 130 GEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLV 189
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
++ ++ + + M + + NAL+ + CG++ AR IF D
Sbjct: 190 SSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF-------DN 242
Query: 147 LHELIRIKAVDDDLHE 162
L + + + DD+ E
Sbjct: 243 LEKRTIVSKLFDDMEE 258
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-----LKYECKVFRKITQPSVFLWNT 57
+L Q H+ +K GL+ H L+ + + Y +F +I P+ ++WNT
Sbjct: 22 ELHQAHAHILKSGLI---HSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFT-----RDIAGSLEKSC 109
+I+ Y+ + + + ++ +L + V D YTF F K F+ R I G + K+
Sbjct: 79 IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138
Query: 110 IVMRVFVQNALISTYCLCGEVDMAR 134
+ +F+QN LI Y CG ++ AR
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDAR 163
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
+VF + +V WN MI GYS ++++ D+ + V+ DN T +
Sbjct: 196 RVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVG 255
Query: 102 AGS--------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
A S ++K+ I + FV AL+ Y CG ++ A +F SC D
Sbjct: 256 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFN-SCLRKD 306
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG----DLKYECKVFRKITQPSVFLWN 56
M QLKQIH+QT++ P+ +L + +L Y +VF P+ F+WN
Sbjct: 35 MPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWN 94
Query: 57 TMIKGYSRI--DSHKNGVL-MYLDLLKSDVRR---DNYTFPFLFK--GFTRDIAGSLEKS 108
T+I+ Y+R +HK+ + +Y ++ + + DN+TFP + K +T + +
Sbjct: 95 TLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVH 154
Query: 109 CIVMR------VFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V++ ++ N+L+ Y CG +D+A +FY E ++
Sbjct: 155 AHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNE 197
>gi|326519576|dbj|BAK00161.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 608
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K G H T+ + Y + G L +VF + + + F W +I +S
Sbjct: 87 RQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALADAERVFDALPKKNAFAWAAVIGLWS 146
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
R H + Y+D+L++ V DN+ P + K G R + G K+ V+
Sbjct: 147 RAGLHSRALDGYVDMLQAGVPVDNFVVPNVLKSCAGIGMVGTGRALHGYAWKAGFRECVY 206
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y CG+VD AR +F
Sbjct: 207 VLSSLVDFYGKCGKVDDAREVF 228
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M+QLKQIH+ +++ GL T++L+ L + DL Y C +F +I +PSV+L+N
Sbjct: 1 MNQLKQIHAYSLRNGL-------DHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKF 53
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
I+ +S I L+Y + + Y+F FLF + + KS
Sbjct: 54 IQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGF 113
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+F AL+ Y G + AR +F
Sbjct: 114 ASDMFAMTALLDMYAKLGMLRSARQLF 140
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+LKQIH++ +K GLL P+ + L F +P FLWN MI+G
Sbjct: 26 ELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGL 85
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRV 114
S D +L+Y +L + YTFPFL K T I + K +
Sbjct: 86 SCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDI 145
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+ N+LI++Y + G A +F
Sbjct: 146 YAVNSLINSYAVTGNFKHAHLLF 168
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 33 EKGDLKYECKVFRKITQPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
+ G++ +FRK+ + + W TMI GY + +K + ++ ++ S+V DN +
Sbjct: 188 KAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLA 247
Query: 92 FLFKGFTRDIAGSLEKSCIV------MRVFVQN----ALISTYCLCGEVDMARGIF 137
++ G+LE+ + R + + LI Y CGE++ A G+F
Sbjct: 248 SALSACSQ--LGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVF 301
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-----LKYECKVFRKITQPSVFLWNT 57
+L Q H+ +K GL+ H L+ + + Y +F +I P+ ++WNT
Sbjct: 22 ELHQAHAHILKSGLI---HSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFT-----RDIAGSLEKSC 109
+I+ Y+ + + + ++ +L + V D YTF F K F+ R I G + K+
Sbjct: 79 IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138
Query: 110 IVMRVFVQNALISTYCLCGEVDMAR 134
+ +F+QN LI Y CG ++ AR
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDAR 163
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L+ +VF + +V WN MI GYS ++++ D+ + V+ DN T +
Sbjct: 219 GLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVL 278
Query: 95 KGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
A S ++K+ I + FV AL+ Y CG ++ A +F SC D
Sbjct: 279 SACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFN-SCLRKD 336
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-----LKYECKVFRKITQPSVFLW 55
+ +LKQI + TIK T + P L+ + + + + ++F KI QP + L+
Sbjct: 48 LRELKQIQAYTIK----THQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLF 103
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS----CIV 111
NTM +GY+R D +L+ +L S + D+YTF L K R +LE+ C+
Sbjct: 104 NTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACAR--LKALEEGKQLHCLA 161
Query: 112 MRV------FVQNALISTYCLCGEVDMARGIF 137
+++ +V LI+ Y C +VD AR +F
Sbjct: 162 VKLGVGDNMYVCPTLINMYTACNDVDAARRVF 193
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H +KLG+ + CP T + D+ +VF KI +P V +N +I +
Sbjct: 155 KQLHCLAVKLGVGDNMYVCP--TLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCA 212
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R + ++ +L +S ++ + T R I ++K+ V
Sbjct: 213 RNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVK 272
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ALI Y CG +D A +F
Sbjct: 273 VNTALIDMYAKCGSLDDAVSVF 294
>gi|297845488|ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336467|gb|EFH66884.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ ++ +IH +K G+ ++ L D++Y +F ++ +++++NTMI+
Sbjct: 37 IFEVSRIHGYMVKTGIDKDDF--SVSKLLAFSSVLDIRYASSIFEHVSNTNLYMFNTMIR 94
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMR----V 114
GYS D + ++ L + D ++F K +RD+ S+ + I +R V
Sbjct: 95 GYSISDEPERAFRVFNQLRAKGITLDRFSFITTLKSCSRDLCSSIGEGLHGIALRSGFMV 154
Query: 115 F--VQNALISTYCLCGEVDMARGIF 137
F ++NAL+ YC+CG ++ AR +F
Sbjct: 155 FTDLRNALLQFYCVCGRINDARKVF 179
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQ-----TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
KQ+H I GL+ + + L E L +FR + WN +I
Sbjct: 99 KQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCS------WNILI 152
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y + ++ +L Y ++ VR DN+TFP + K F ++ S+
Sbjct: 153 TSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTP 212
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+FV NALIS Y CGEVD AR +F
Sbjct: 213 WSLFVHNALISMYGRCGEVDTARNLF 238
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
D+++ +FR S WN+M+ G + + + + ++ +LL V D TF +
Sbjct: 366 DIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILP 425
Query: 96 GFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
R D+ E C + + + + NAL+ Y G+V A+ IFY + D+
Sbjct: 426 LCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDE 484
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LKQIH+Q ++GL K + G+L Y K+F+ I P + ++N +I
Sbjct: 50 MTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLII 109
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA------GSLEKSCIV 111
K +++ ++K ++++ L + + DN+T+PF+FK G+ +++ G + K+ +
Sbjct: 110 KAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLE 169
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+V+N+LI Y D+ + +F
Sbjct: 170 FDTYVRNSLIDMYAQLALTDVMKMLF 195
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ ++F V +W MI GY + + V ++ ++ V+ D + L
Sbjct: 318 GELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLL 377
Query: 95 KGFTRDIAGSLEK----------SCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
G + G++E+ + I + V ALI Y CG ++ A IFY
Sbjct: 378 TGCAQ--TGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFY 429
>gi|449488709|ref|XP_004158148.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 556
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ QIH +K L P + LL D+KY +FR+I P++F++NTM++GY
Sbjct: 43 KISQIHCYMVKTALDLDPFTLSK---LLASAILDIKYAASIFREIRNPNLFMFNTMLRGY 99
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRV 114
S + K +++ DL D D ++F K R++A G + KS +
Sbjct: 100 SNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSGHGLFN 159
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V N L+ Y C ++ A +F
Sbjct: 160 DVNNILLHFYGACEQIKDAHKLF 182
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH++ IK GL + K + +L D L Y VF I +P++ +WNTM
Sbjct: 15 LQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTM 74
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPFL K + I G + K
Sbjct: 75 FRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGC 134
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ ++V +LI+ Y G + AR +F S D
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRD 168
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----- 96
K+F +I V WN +I GY+ ++K + ++ +++K++V+ D T +
Sbjct: 190 KMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSA 249
Query: 97 ---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ + + NALI Y CGEV+ A G+F
Sbjct: 250 SIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF 293
>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ QIH +K L P + LL D+KY +FR+I P++F++NTM++GY
Sbjct: 43 KISQIHCYMVKTALDLDPFTLSK---LLASAILDIKYAASIFREIRNPNLFMFNTMLRGY 99
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRV 114
S + K +++ DL D D ++F K R++A G + KS +
Sbjct: 100 SNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSGHGLFN 159
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V N L+ Y C ++ A +F
Sbjct: 160 DVNNILLHFYGACEQIKDAHKLF 182
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LKQ+H+Q IK + P + R+ + + DL Y K+FR + +P+ F +NT+I
Sbjct: 24 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 83
Query: 60 KGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGF--------TRDIAGSLEKSCI 110
+ S + + +L+++++++ V + +TFP +FK R + G K +
Sbjct: 84 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 143
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFY 138
FV + ++ Y CG ++ A +FY
Sbjct: 144 DSDEFVVSNVVRMYLSCGVMEDAHRLFY 171
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ +F ++ Q SV WN MI GY++ K V ++ ++ ++V + T +
Sbjct: 207 GELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 266
Query: 95 KGFTRDIAGSLEKSCIVMRVFVQN----------ALISTYCLCGEVDMARGIF 137
+R G+LE V V+N ALI Y CG ++ A +F
Sbjct: 267 PAMSR--LGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVF 317
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQ+H+ +K G + R + D+ Y VF ++ + + F WNT+I
Sbjct: 28 MRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVI 87
Query: 60 KGYSRI-DSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSC 109
+ + D H + +L++ +L ++ V + +TFP + K + + G L K
Sbjct: 88 RALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFG 147
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIR 152
+V FV L+ Y +CG ++ A +FY + E D + L+R
Sbjct: 148 LVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVR 190
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
G+LK ++F ++ Q SV WN MI GY++ +K + ++ +++ DV + T +
Sbjct: 213 GNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSV 272
Query: 94 FKGFTRDIAGSL----------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+R G L EK+ I + + +AL+ Y CG ++ A +F
Sbjct: 273 LPAISR--LGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVF 324
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLL------YEKGDLKYECKVFRKITQPSVFL 54
+ QLK +H+ ++LG Q YL ++ D Y +F +I +P V L
Sbjct: 29 LKQLKHVHAALLRLGF-------DQGSYLWSMIIRSSFDFNDTTYTRLIFNQIKEPDVVL 81
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVM 112
+NTMI+G D + Y + K +N+TFPF+ K R D + +V+
Sbjct: 82 YNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVV 141
Query: 113 R------VFVQNALISTYCLCGEVDMA 133
+ +FV +L+S Y CG +D A
Sbjct: 142 KLGFDCNLFVNTSLVSLYAKCGSIDDA 168
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+ +KLG + T + LY K G + K+ I + ++ W +I GY +
Sbjct: 136 MHTLVVKLGF--DCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGV 193
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS------LEKSCIVMRVFVQ 117
++ + ++ +L++ +R D++T + + D+A + ++ + VFV
Sbjct: 194 GKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVT 253
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDD 144
+L+ Y G ++ AR +F E D
Sbjct: 254 TSLVDLYAKHGNMEKARCLFDGMAERD 280
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H++ +LG+ + T+ + Y L+ +F KI + ++FLWN +I+ Y+
Sbjct: 78 KQLHARLCQLGI--AYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYA 135
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
H+ + +Y +L+ ++ DN+T PF+ K G R I + +S VF
Sbjct: 136 WNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVF 195
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V AL+ Y CG V AR +F
Sbjct: 196 VGAALVDMYAKCGCVVDARHVF 217
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 1 MHQLKQIHSQTIKLGL---------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQP 50
+ +LK H K GL L C TR L + K +VF +
Sbjct: 44 IDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAK-------EVFENGESYG 96
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKS 108
+ F++N++I+GY+ K +L+++ ++ S + D YTFPF +RD ++
Sbjct: 97 TCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIH 156
Query: 109 CIVMR------VFVQNALISTYCLCGEVDMARGIF 137
++++ +FVQN+L+ Y CGE+D AR +F
Sbjct: 157 GLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVF 191
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
QIH IK+ K + + E G+L KVF ++++ +V W +MI GY+R
Sbjct: 154 QIHGLIIKMDY-AKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARR 212
Query: 66 DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
+ K+ V ++ +++ DV ++ T + + + + S I + +
Sbjct: 213 EFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLM 272
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C +D+A+ +F
Sbjct: 273 ISALVDMYMKCNAIDIAKRLF 293
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+ QIH+Q I GLL +P + L +++ +F + +P F+ NT+++ Y
Sbjct: 74 EFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIMRTY 133
Query: 63 SRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
++ + Y + +++ V ++YTFP L K G I + K +
Sbjct: 134 VNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELD 193
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+FV+N+LI Y +CG + AR +F
Sbjct: 194 LFVRNSLIHMYSVCGRIGDARAMF 217
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IHS IK + +P T L +Y K G + VF K++ SV WN+MI GY
Sbjct: 372 KWIHSY-IKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYG 430
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTF 90
+ M+LD+ K ++ TF
Sbjct: 431 MHGQADKALEMFLDMEKRGPMPNDATF 457
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E GD+ Y V R+I PSV++WN+MI+G+ + + +L+Y ++++ D++TFPF
Sbjct: 50 EFGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPF 109
Query: 93 LFKG---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
+ K G SCIV F +A +T G + M Y+SC D
Sbjct: 110 VLKACCVIADQDCGKCIHSCIVKSGFEADAYTAT----GLLHM-----YVSCAD 154
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T L +Y K G LK +F K+ Q ++ WN+MI Y++ + H+ + ++ D+ S V
Sbjct: 251 TAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVY 310
Query: 85 RDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D TF + + + L K+ I + + AL+ Y GE+ A+ I
Sbjct: 311 PDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKI 370
Query: 137 F 137
F
Sbjct: 371 F 371
>gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 575
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 13/176 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ +L Q H I GL H L E GD+ Y +FR I P+ F N +IK
Sbjct: 62 VRELFQFHGHLITSGLFND-HFWANRVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIK 120
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--------IVM 112
YS V +Y + L + +R D+YTF LF G+ + C +
Sbjct: 121 AYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDS 180
Query: 113 RVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDL---HELF 164
+ + N+LI Y C +++ R +F MS +D + ++ A DL H++F
Sbjct: 181 VMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMF 236
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL +F + + +V WN MI Y R + + ++ +++ +R +N T +
Sbjct: 227 GDLYTAHDMFDVMPERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVL 286
Query: 95 KGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+R + G + ++ + VF+ AL+ Y C V +AR +F
Sbjct: 287 SACSRSARLNEGRSVHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVF 337
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG----DLKYECKVFRKITQPSVFLWNTMIK 60
K IH+Q I G P T+ L+LY + DL Y K+F ++ + ++ WNTMI
Sbjct: 91 KSIHTQMISNGY--NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMIL 148
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVM 112
Y+R+D + + +Y + S D +TFP + K G R + S+ K+ +
Sbjct: 149 AYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNC 208
Query: 113 RVFVQNALISTYCLCGEVDMA 133
+FV AL+ Y G +D A
Sbjct: 209 NLFVGGALVDGYARFGWMDDA 229
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+Q +QIH+ I+ + TK + + E G L Y ++F ++ + + + WN+MI+G
Sbjct: 496 NQGRQIHAHLIRANI-TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEG 554
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
Y + + + ++ + + ++ D ++ + R++ + ++ +
Sbjct: 555 YQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE 614
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVD----DDLHELFPEYLV 169
+Q L+ Y CG +D A ++ + + D L+ ++ V+ +D LF +
Sbjct: 615 GILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQ 674
Query: 170 QMLALPDTFMG 180
+ AL ++ +
Sbjct: 675 RNTALWNSILA 685
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
KQ+HS+ I G K + +Y K D + C KVF ++ + + WN++I +
Sbjct: 296 KQVHSKLIACGF--KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA 353
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ + ++++L + +S + + + + G R++ G L ++ + +
Sbjct: 354 QFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDII 413
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +AL+ Y CG V+ A +F
Sbjct: 414 LGSALVDMYSKCGMVEEAHQVF 435
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT----------FP 91
+F ++ Q + LWN+++ GY+ K +L++L+SD+ D T P
Sbjct: 667 NLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLP 726
Query: 92 FLFKGFTRDIAGSL--EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L G D SL +K + V ++ AL+ Y CG + AR +F
Sbjct: 727 ALEHG---DQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVF 771
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLL--YEK-GDLKYECKVFRKITQPSVFLWNT 57
M ++Q+ S +K GL +C L+ Y + G + +I SV WN
Sbjct: 191 MGGVRQLQSSVVKAGL----NCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF----TRDIAGSLEKSCIVM- 112
+I GY +I S + ++ +LK V DN+TF + +RD + I
Sbjct: 247 VIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACG 306
Query: 113 ---RVFVQNALISTYCLCGEVDMARGIF 137
FV NALI Y C + + +F
Sbjct: 307 FKGDTFVGNALIDMYAKCDDEESCLKVF 334
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 31 LYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNY 88
+Y K + E +VFR + + + +N ++ GY + + + +Y D+ D ++ D +
Sbjct: 421 MYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQF 480
Query: 89 TFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
TF L R I L ++ I + V+ L+ Y CG ++ A+ IF
Sbjct: 481 TFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 537
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 6 QIHSQTIKLGLLTKPHCPK--QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q+HS IK G + +C +T + +Y K G + VF + ++ WN MI GY
Sbjct: 733 QLHSLIIKKGFV---NCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGY 789
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
S+ K +++Y ++ K + + TF
Sbjct: 790 SKHGCSKEALILYEEMPKKGMYPNEVTF 817
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q Q+H+ G L + + T+ Y G + Y +F +I + FLWN+MI
Sbjct: 38 LTQALQLHAHVTTGGTLRR-NTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMI 96
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIAGSLEKSCIVMR-- 113
+GY+ +S + +YL +L + DN+T+PF+ K R++ + +V
Sbjct: 97 RGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLE 156
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
V+V N+++S Y G+V+ AR +F
Sbjct: 157 EDVYVGNSILSMYFKFGDVEAARVVF 182
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M L+Q+H+ I+ GL K + + E G + Y +VF KI P FLWNTMI
Sbjct: 64 MKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMI 123
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIVMR--- 113
+G R + Y + DN+T+ FL K D+ G + C V++
Sbjct: 124 RGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGK-QIHCNVLKHGL 182
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
VFV+N L+ Y + +++ A +F
Sbjct: 183 EEHVFVRNTLVHMYGMFKDIEAATHLF 209
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH +K GL + H + + +Y D++ +F ++ + + WNT+I
Sbjct: 171 KQIHCNVLKHGL--EEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNV 228
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+K + ++ +L+S ++ D+ TF R + ++ + + V
Sbjct: 229 YCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVS 288
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAV---DDDLHELFPEYLVQM 171
V N+LI Y CG V+ A IF M + + +I A+ D+ ELF + L +
Sbjct: 289 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 348
Query: 172 LALPD--TFMG 180
LA P+ TF+G
Sbjct: 349 LATPNEVTFLG 359
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
QLKQ+H+ ++ + P+ P + + Y +FR +T + F+ NTMI+
Sbjct: 20 QLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTMIR 79
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG------------FTRDIAGSLEKS 108
GY + S + V YL +L++ V +NYTFP L K R + G + K
Sbjct: 80 GYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVVKF 139
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +V +A I Y + EVD AR +F
Sbjct: 140 GLRNDPYVVSAFIEFYSVSREVDTARVLF 168
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKP---HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
+++ K +H TI GLL P H P + G + K+F ++ PS+FLWN
Sbjct: 95 LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAF-CGCVPLARKLFDDLSDPSLFLWNA 153
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRD--------IAGSLEKS 108
+IK Y H + + ++ ++ S D YTFP + K + I G S
Sbjct: 154 IIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVS 213
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FVQN+L++ Y CG+V +AR +F
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVF 242
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + +Y K + + Y +VF K + WN ++ G + + V ++ +L +V
Sbjct: 425 TALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVE 484
Query: 85 RDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
++ TF + + ++ L +S + ++ V LI Y CG +D A I
Sbjct: 485 ANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKI 544
Query: 137 F 137
F
Sbjct: 545 F 545
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
Q L +Y G + +VF + + SV WNTMI G+ + + + ++ ++ + V
Sbjct: 222 QNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARV 281
Query: 84 RRDNYTFPFLFK--GFTRDIAGSL------EKSCIVMRVFVQNALISTYCLCGEVDMARG 135
D+ T G +++ + +K+ + ++ V+NAL+ Y CG +D A
Sbjct: 282 EPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASL 341
Query: 136 IFYMSCEDD 144
+F + E D
Sbjct: 342 VFAETKEKD 350
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI--TQPSVFLWNT 57
+ Q+ +HS ++ G ++K T + +Y K G L Y K+F +I + + +W+
Sbjct: 503 LKQVMNLHSYLVRSGFISK--IAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSV 560
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
+I GY + VL++ ++ S ++ + TF
Sbjct: 561 LIAGYGMHGHGETAVLLFNQMVHSGMQPNEITF 593
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK+GL + K + +L + L Y VF+ I +P++ +WNTM
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPF+ K + I G + K
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++V +LIS Y G ++ A +F
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVF 192
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G ++ K+F +I V WN MI GY+ ++K + ++ D++K++VR D T
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 93 LFKGFTRDIAGSLEKSCIV----------MRVFVQNALISTYCLCGEVDMARGIF 137
+ + +GS+E V + + NALI Y CGE++ A G+F
Sbjct: 272 VVSACAQ--SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+L+ C +F ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVF 427
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M Q+KQ+HS I P + L + D+ + K+F + + F+WNT+I
Sbjct: 23 MSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTII 82
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
+ + + + + +Y ++L++ +NYTF F+ + T + L V+++
Sbjct: 83 RIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESY 142
Query: 115 -FVQNALISTYCLCGEVDMARGIFYMS-CED 143
FV N LI Y V+ AR +F +S C D
Sbjct: 143 DFVLNGLIHLYANWSSVEAARKLFDVSTCRD 173
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD--LKYECKVFRKITQPSVFLWNTMIK 60
+LKQIH++ +K GL+ + + + L Y VF +P FLWN MI+
Sbjct: 58 ELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 117
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVM 112
G+S D + +L+Y +L + YTFP L K T I + K
Sbjct: 118 GFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYEN 177
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V+ N+LI++Y G +A +F
Sbjct: 178 DVYAVNSLINSYAATGNFKLAHLLF 202
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G + +FRK+ + + W TMI GY + HK + ++ ++ SDV DN +
Sbjct: 222 KAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLAN 281
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I L K+ I M + LI Y CG++ A +F
Sbjct: 282 ALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVF 334
>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
Length = 613
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
+ ++ H++ +KLGL P + G + Y +F + P F +NT++
Sbjct: 46 EARKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNTLM 105
Query: 60 KGYSRIDSHKNG-----VLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLE 106
+GY + +++D++ V D+YTFPF+FK R + G L
Sbjct: 106 RGYVAAAGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLV 165
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
K QN+LIS Y CGE D+AR F EDD+
Sbjct: 166 KLGFQRDEHSQNSLISFYGKCGEADLARRAFEQ-MEDDE 203
>gi|357130454|ref|XP_003566863.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Brachypodium distachyon]
Length = 608
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K G H T+ + Y + G L + F + + + F W +I +S
Sbjct: 87 RQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALDDAERAFDALPKKNAFAWAAVIGLWS 146
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R H V Y+D+L++ V DN+ P + K R + K+ V+
Sbjct: 147 RAGLHARAVAGYVDMLEAGVPADNFVVPNVLKACAGIGMIETGRALHAYAWKAGFGECVY 206
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y CGEVD AR +F
Sbjct: 207 VLSSLVDFYGKCGEVDDAREVF 228
>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
Length = 788
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 9/145 (6%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIK 60
H +QIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 43 HTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIG 102
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL--------FKGFTRDIAGSLEKSCIVM 112
R+ + ++ ++++LK ++ DN+ P + ++GF R + G + KS +
Sbjct: 103 VKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDD 162
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VFV ++L Y CG +D AR +F
Sbjct: 163 CVFVASSLADMYGKCGVLDDARKVF 187
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G++ + +VF K+ + VF WN M+ GY ++ + + +Y +L + +R D YT
Sbjct: 140 MLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYT 199
Query: 90 FPFLFK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
FP + + G D E V+R V V NAL++ Y CG++ AR +F
Sbjct: 200 FPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVF 255
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 15/179 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ ++ G + +Y K GD+ KVF + WN MI G+
Sbjct: 217 REVHAHVLRFGF--GDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHF 274
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIVMRVF 115
+ G+ ++L +L+++V+ + T + GF +++ G K + V
Sbjct: 275 ENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVA 334
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLAL 174
N+LI Y G + A IF E D + I + + FP+ +++ AL
Sbjct: 335 FCNSLIQMYTSLGRMGDAGKIF-SRMETKDAMSWTAMISGYEKN---GFPDKALEVYAL 389
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK IH+ + L K R+ + G L Y ++F +I QP+ F +NT+I
Sbjct: 195 MQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 254
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR------------DIAGSLEK 107
+GYS+ S V ++ + ++ V D +TF FL KG +R +I G++ K
Sbjct: 255 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 314
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV NALI Y G A +F
Sbjct: 315 LGFCFHLFVMNALIHLYAARGVPAAAHQVF 344
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G+L+ +VF ++ + V W M+ GY++ + + ++ ++ VR D +
Sbjct: 365 AGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSV 424
Query: 94 FKGFTRDIAGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIF 137
T G LE V R V + NALI Y CG +D+A +F
Sbjct: 425 ISACTS--LGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVF 476
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKP---HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
+++ K +H TI GLL P H P + G + K+F ++ PS+FLWN
Sbjct: 95 LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAF-CGCVPLARKLFDDLSDPSLFLWNA 153
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRD--------IAGSLEKS 108
+IK Y H + + ++ ++ S D YTFP + K + I G S
Sbjct: 154 IIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVS 213
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FVQN+L++ Y CG+V +AR +F
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVF 242
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 31 LYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K + + Y +VF K ++ WN ++ G + + V ++ +L +V ++ T
Sbjct: 402 MYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHAT 461
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + ++ L +S + ++ V LI Y CG +D A IF
Sbjct: 462 FNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIF 517
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
Q L +Y G + +VF + + SV WNTMI G+ + + + ++ ++ + V
Sbjct: 222 QNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARV 281
Query: 84 RRDNYTFPFLFK--GFTRDIAGSL------EKSCIVMRVFVQNALISTYCLCGEVDMARG 135
D+ T G+ +++ + +K+ + ++ V+NAL+ Y CG +D A
Sbjct: 282 EPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASL 341
Query: 136 IFYMSCEDD 144
+F + E D
Sbjct: 342 VFAETKEKD 350
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI--TQPSVFLWNT 57
+ Q+ +HS ++ G ++K T + +Y K G L Y K+F +I + + +W+
Sbjct: 475 LKQVMNLHSYLVRSGFISK--IAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSV 532
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
+I GY + VL++ ++ S ++ + TF
Sbjct: 533 LIAGYGMHGHGETAVLLFNQMVHSGMQPNEITF 565
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLL----YEKGDLKYECKVFRKITQPSVFLWN 56
M+ + ++H IK +K + P R LLL L Y VF +I P +N
Sbjct: 1 MNNVYRLHCYIIKS---SKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYN 57
Query: 57 TMIKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR-- 113
T+I+ +SR SH + + + + + DN+TFPF+ K +R + +L ++++
Sbjct: 58 TIIRSHSRFFPSHS--LFYFFSMRSNGIPLDNFTFPFVLKACSR-LQINLHLHSLIVKYG 114
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
+FVQNALI Y CG ++MA +F
Sbjct: 115 LDSDIFVQNALICVYGYCGSLEMAVKVF 142
>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 564
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QL IH ++ G + L L ++GD+K+ K+F +I + V W MI +
Sbjct: 30 QLLLIHGNSVTNGFGSNLQLNDMLIDLYL-KQGDVKHARKLFDRIPKRDVVSWTAMISRF 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVMRV 114
SR H++ +L++ + + DVR + +T+ + K G ++ I G LEK +
Sbjct: 89 SRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNL 148
Query: 115 FVQNALISTYCLCGEVDMAR 134
V++AL+S Y CG+++ AR
Sbjct: 149 IVRSALLSLYARCGKMEDAR 168
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ QLK +H+Q I GL T+ + + + DL+Y K+F +I QP+ F++N +IK
Sbjct: 49 LKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLR-DLRYAHKLFDQIPQPNKFMFNHLIK 107
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF----- 115
GYS +L+Y ++ + + +T PF+ K L C+ + F
Sbjct: 108 GYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWL-GVCVHAQSFKLGMG 166
Query: 116 ----VQNALISTYCLCGEVDMARGIF 137
VQNA+++ Y CG + AR +F
Sbjct: 167 SHACVQNAILNIYVACGLITSARRVF 192
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+Q+ KLG+ H Q L +Y G + +VF I++ ++ WN+MI GYS++
Sbjct: 156 VHAQSFKLGM--GSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKM 213
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRV----FVQ 117
+ VLM+ ++ + + D +T L T+ D+ + +V + V
Sbjct: 214 GRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVT 273
Query: 118 NALISTYCLCGEVDMARGIF 137
NAL+ Y CG + A+ +F
Sbjct: 274 NALMDMYAKCGNLKCAKSVF 293
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 32 YEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
++ D Y +F +I QP++FLWNTMI+G D + + Y + +N+TFP
Sbjct: 57 FDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFP 116
Query: 92 FLFKGFTRDIAGSLE------------KSCI-----VMRVFVQNALISTYCLCGEVDMAR 134
F+ K R + L CI V VFV +L+ Y CG ++ AR
Sbjct: 117 FVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKAR 176
Query: 135 GIF 137
+F
Sbjct: 177 SVF 179
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH + IK G +T +T L +Y K G L VF +I++ +V WN MI
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRV--RTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMI 480
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVMRVF- 115
Y + + + N V + LLK ++ D+ TF + A G +S I+ F
Sbjct: 481 TAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540
Query: 116 ----VQNALISTYCLCGEVDMARGIF 137
++NAL+S + CG++ A +F
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLF 566
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q K++H++ ++GL T+ + T L +Y K G ++ +VF + +V W MI
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVG--TALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G+++ + L + +++S + + TF + + R I + K+ +
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI 439
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V+ AL+S Y CG + AR +F
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVF 465
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K + S I+ G + H + + GDL +F + + + WNT+I G+ +
Sbjct: 528 KWVQSLIIRAGFESDLHI-RNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQ 586
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
++ + + +S V+ D TF L R + + ++ + V V
Sbjct: 587 HGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVV 646
Query: 117 QNALISTYCLCGEVDMARGIFY 138
LIS Y CG +D A +F+
Sbjct: 647 GTGLISMYTKCGSIDDAHLVFH 668
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+ ++F ++ V+ WN ++ GY + ++ ++ +++ V+ D YT
Sbjct: 148 MYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYT 207
Query: 90 FPFLFKGF--TRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
F ++ +++ E +++ +FV ALI+ + CG VD A +F
Sbjct: 208 FVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K++H+ I+ L T P +L VF +I P++ +WN MI+G S+
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR------VFV 116
D + MY + + +N T FLFK R DI + ++ +FV
Sbjct: 94 SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153
Query: 117 QNALISTYCLCGEVDMARGIF 137
NALI Y +CG++ A+ +F
Sbjct: 154 SNALIHMYAMCGQLGFAQKMF 174
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L K+F + + V W +MI GYS+ + V ++ +++ + V+ D T +
Sbjct: 297 GNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVL 356
Query: 95 KGFTR----DIAGS----LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
D+ + + + + ++V N+LI YC CG V+ A +F+
Sbjct: 357 SACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFH 408
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH +KLG + + + +Y G L + K+F + + WNT+I GYS
Sbjct: 136 RKIHVHALKLGF--ESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS 193
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + +K + ++ + ++++ D T + F + ++++ + + V+
Sbjct: 194 QYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVY 253
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ N LI Y ++A+G+F
Sbjct: 254 LGNTLIDMYGRRSLAELAQGVF 275
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M LK IH+ + L K R+ + G L Y ++F +I QP+ F +NT+I
Sbjct: 8 MQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 67
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR------------DIAGSLEK 107
+GYS+ S V ++ + ++ V D +TF FL KG +R +I G++ K
Sbjct: 68 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 127
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV NALI Y G A +F
Sbjct: 128 LGFCFHLFVMNALIHLYAARGVPAAAHQVF 157
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G+L+ +VF ++ + V W M+ GY++ + + ++ ++ VR D +
Sbjct: 178 AGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSV 237
Query: 94 FKGFTRDIAGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIF 137
T G LE V R V + NALI Y CG +D+A +F
Sbjct: 238 ISACTS--LGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVF 289
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ L Q+H+ I L P T+ + Y + GDL+ VFR P F+W ++
Sbjct: 14 LRTLAQLHAHIIVTALHNDP--LPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLL 71
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
K + ++ + +Y +L ++ ++YTFP + + G + + G + KS
Sbjct: 72 KSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFD 131
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
M V AL+S Y G +D AR +F
Sbjct: 132 MDPVVNTALLSVYGELGYLDSARKVF 157
>gi|15223380|ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g26900, mitochondrial; Flags: Precursor
gi|4262179|gb|AAD14496.1| Hypothetical protein [Arabidopsis thaliana]
gi|332192635|gb|AEE30756.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 572
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ +IH +K GL ++ L D++Y +F ++ ++F++NTMI+GY
Sbjct: 43 EVSRIHGYMVKTGLDKDDFAV--SKLLAFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGY 100
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMR----VF- 115
S D + ++ L + D ++F K +R++ S+ + I +R VF
Sbjct: 101 SISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFT 160
Query: 116 -VQNALISTYCLCGEVDMARGIF 137
++NALI YC+CG++ AR +F
Sbjct: 161 DLRNALIHFYCVCGKISDARKVF 183
>gi|255575930|ref|XP_002528862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531713|gb|EEF33536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMI 59
+ +KQIH+Q I G LL + Y V++ I PSVF N MI
Sbjct: 36 VSSIKQIHAQFIISGFTGHASLLGHLLSLLALSPENQFHYSYSVYQSIKNPSVFASNNMI 95
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--GSLEKSCIVMR---- 113
+ +S+ + V+ Y +L+ +R +NY+F FLF+G + + ++ C V++
Sbjct: 96 RCFSKSELPLESVVFYSSMLRRFIRPNNYSFTFLFQGCGKGLGFIEGVQIHCHVIKFGFC 155
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
V+V+NALI + C V+ ++ +F
Sbjct: 156 EDVYVRNALIHFFFACCRVECSKQVF 181
>gi|224058585|ref|XP_002299553.1| predicted protein [Populus trichocarpa]
gi|222846811|gb|EEE84358.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 3 QLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+ Q+H++ KLG + P + Y + + ++ Y +F P+ F +N MI+G
Sbjct: 40 EFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRG 99
Query: 62 YSRIDSHKNGV-LMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
Y++ + +N + L Y L ++ + TFPF+ K + + + G + K +
Sbjct: 100 YAQREKPENALSLFYSMLCNANSGPNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSE 159
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+FVQN+LI+ Y CG + A +F
Sbjct: 160 DLFVQNSLINMYSSCGLIGFACQVF 184
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-RDNYTFPFLFKGFTR--------DIAGS 104
+WNTMI+GYSR D+ + +++Y+ ++ + +N+TFPFL R ++
Sbjct: 1 MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K +FV+NALI Y + G +++AR +F
Sbjct: 61 IIKHGFESDLFVRNALIHLYSVFGNLNLARTLF 93
>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
Length = 1068
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G++ + +VF K+ + VF WN M+ GY ++ + + +Y +L + +R D YT
Sbjct: 140 MLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYT 199
Query: 90 FPFLFK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
FP + + G D E V+R V V NAL++ Y CG++ AR +F
Sbjct: 200 FPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVF 255
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 15/179 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ ++ G + +Y K GD+ KVF + WN MI G+
Sbjct: 217 REVHAHVLRFGF--GDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHF 274
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIVMRVF 115
+ G+ ++L +L+++V+ + T + GF +++ G K + V
Sbjct: 275 ENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVA 334
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLAL 174
N+LI Y G + A IF E D + I + + FP+ +++ AL
Sbjct: 335 FCNSLIQMYTSLGRMGDAGKIF-SRMETKDAMSWTAMISGYEKN---GFPDKALEVYAL 389
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G L + +T+ ++ Y K DL+ +F K+ +VF W +I
Sbjct: 79 KQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKC 138
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R+ + ++ ++++L++++ DN+ P +FK F R + G + K+ + VF
Sbjct: 139 RMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVF 198
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 199 VASSLADMYGKCGVLDDARKVF 220
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H++ ++G+ P T+ + LY L +F +I++ ++FLWN MI+GY+
Sbjct: 21 KQLHARICQVGISFNPLLA--TKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYA 78
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
++ + +Y + + D +TFPF+ K + + I + +S + VF
Sbjct: 79 WNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVF 138
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ALI Y CG V+ AR +F
Sbjct: 139 VGAALIDMYAKCGCVESARQVF 160
>gi|297791497|ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309468|gb|EFH39892.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 460
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ LKQIH+Q I +GL H ++ L L L Y + R+I PSVFL+NT+I
Sbjct: 22 LQNLKQIHAQIITIGL--SHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLI- 78
Query: 61 GYSRIDSHKNGVLMYLDLLKSD---------VRRDNYTFPFLFKGFTRDIAGSLEKSCIV 111
S I S+ N +L D VR + +T+P LFK + +
Sbjct: 79 --SSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFETKWHRHGRALH 136
Query: 112 MRV-----------FVQNALISTYCLCGEVDMARGIF 137
V FVQ AL+ Y CGE+ AR +
Sbjct: 137 AHVLKFIEPVNHDRFVQAALVGFYANCGELREARSLL 173
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L+ + +I +P + WNT++ Y+ + ++ + ++ VR + + L
Sbjct: 164 GELREARSLLERIREPDLATWNTLLAAYANSEETESDEEVLKLFVRMQVRPNELSLVALI 223
Query: 95 KGFTR--DIAGS------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDD 145
K + G L K + + FV +LI Y CG + AR +F MS D
Sbjct: 224 KSCANLGEFWGGVWAHVYLLKKNLTLNQFVGTSLIDFYSKCGCLSFARQVFDEMSERDIS 283
Query: 146 GLHELIRIKAV 156
+ +IR AV
Sbjct: 284 CFNAMIRGLAV 294
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 26/191 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQP---SVFLWN 56
++ KQIHS IK GL K + + GDL Y +F + Q +VF+WN
Sbjct: 41 INTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWN 100
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKS 108
++I+GYS S + + ++ +L V+ +++TFPFLFK T+ A K
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVD---------DD 159
+ V ++I Y GE+D AR +F D L + + A+ DD
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVF-----DKSSLRDAVSFTALITGYVSQGCLDD 215
Query: 160 LHELFPEYLVQ 170
LF E V+
Sbjct: 216 ARRLFDEIPVK 226
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 38/174 (21%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYL-----------LLYEKGDLKYEC--------- 41
H+ KQ+H+ +KL L PH ++ L+++K L+
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207
Query: 42 ----------KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
++F +I V WN MI GY + + ++ + ++ +++V + T
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267
Query: 92 FLFKGFTRDIAGSLEK---SCIVMRVF-----VQNALISTYCLCGEVDMARGIF 137
+ +G L K S + F + NALI YC CGE D+AR +F
Sbjct: 268 VVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELF 321
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F I + V WNTMI GYS + ++ + ++ +L+S+V+ ++ TF +
Sbjct: 319 ELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACA--C 376
Query: 102 AGSLEKSCIVMRVFVQN-----------ALISTYCLCGEVDMARGIF 137
G+L+ V +N +LI Y CG ++ A +F
Sbjct: 377 LGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVF 423
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 38 KYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97
Y ++F +I QP F++N MI+G S+ + + +Y ++ + V+ D+YTFPF+ K
Sbjct: 59 NYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKAC 118
Query: 98 TR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
TR + G + + V+N L+ + CG++++A +F SC+ D
Sbjct: 119 TRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGD 173
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H ++LG + + T + + GDL +F + V W+++I GY+R
Sbjct: 129 AVHGMVLRLGFGSNA-VVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARR 187
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYC 125
K ++ ++ + D+ N K + A L V V NA+I+ Y
Sbjct: 188 GDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYV 247
Query: 126 LCGEVDMARGIFYMSC 141
+CG A +F C
Sbjct: 248 VCGLSKQALELFNEMC 263
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 19/149 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLL----YEKGDLKYECKVFRKITQPSVFLWN 56
M+ + ++H IK +K + P R LLL L Y VF +I P +N
Sbjct: 1 MNNVYRLHCYIIKS---SKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYN 57
Query: 57 TMIKGYSRI-DSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR- 113
T+I+ +SR SH L Y ++S+ + DN+TFPF+ K +R + +L ++++
Sbjct: 58 TIIRSHSRFFPSHS---LSYFFSMRSNGIPLDNFTFPFVLKACSR-LQINLHLHSLIVKY 113
Query: 114 -----VFVQNALISTYCLCGEVDMARGIF 137
+FVQNALI Y CG ++MA +F
Sbjct: 114 GLGSDIFVQNALICVYGYCGSLEMAVKVF 142
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M K IH+ + L K R+ + GDL Y +F ++ QP+ F +NT+I
Sbjct: 20 MRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFFYNTLI 79
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG------FTRDIAGSLEKSCIVMR 113
+ +S + L + + ++ + D ++F FL K DI G++ K
Sbjct: 80 RAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLKSRSFTMPLVHDIHGAVFKFGFCRH 139
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ VQNALI Y + G AR +F
Sbjct: 140 LHVQNALIHLYAVGGVTISARKVF 163
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 32 YEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
++ D Y +F +I QP++FLWNTMI+G D + + Y + +N+TFP
Sbjct: 57 FDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFP 116
Query: 92 FLFKGFTR--DIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
F+ K R D+ ++ +V++ VFV+ +L+ Y CG ++ A +F
Sbjct: 117 FVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVF 170
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IH+ +K G +T + LY K G L+ KVF I +V W +I GY
Sbjct: 133 KIHTLVVKGGFDCDVFV--KTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIG 190
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DI-AGSLEKSCI-----VMRVFV 116
+ + + M+ LL+ ++ D++T + T+ D+ +G CI V VFV
Sbjct: 191 VGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFV 250
Query: 117 QNALISTYCLCGEVDMARGIF 137
+L+ Y CG ++ AR +F
Sbjct: 251 GTSLVDMYAKCGNMEKARSVF 271
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH +++G++ T + +Y K G+++ VF + + + W MI+GY+
Sbjct: 233 EWIHKCIMEMGMVRNVFV--GTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA 290
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
K + ++L + + +V+ D YT + R ++G ++++ +
Sbjct: 291 LNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPV 350
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ ALI Y CG + A +F
Sbjct: 351 LGTALIDLYAKCGSMSRAWEVF 372
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 25 QTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SD 82
TR + +Y E + VF ++ ++F WN ++ GY R + + + +L+L+ ++
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTE 205
Query: 83 VRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMAR 134
+ DN+TFP L K T + + G K ++M +FV NA+I+ Y CG +D A
Sbjct: 206 FQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265
Query: 135 GIF 137
+F
Sbjct: 266 ELF 268
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H K +H +K+GL+ + LY K G L ++F K+ + ++ WN++I
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAM--IALYGKCGFLDEAVELFDKMPEQNLISWNSLI 283
Query: 60 KGYSRIDSHKNGVLMYLDLLKS------DVRRDNYTFPFLFKGFTRDIA----GSLEKSC 109
+G+S + LL+S DV P D+ G K
Sbjct: 284 RGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLG 343
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+V + V NALI Y CG + A +F
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILF 371
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 9 SQTIKLGLLTKPHCPKQTRYLL-----------LYEK-GDLKYECKVFRKITQPSVFLWN 56
SQ LGL + HC L+ +Y K G L + ++F ++ V WN
Sbjct: 629 SQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWN 688
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
MI G+ V ++ D+ +SD + D +TF
Sbjct: 689 VMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTF 722
>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Glycine max]
Length = 667
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMI 59
+ Q KQ+H++ I L + P ++ +L Y K + + KVF + F WN M+
Sbjct: 50 LRQGKQLHARLILLSV--TPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAML 107
Query: 60 KGYSRIDSHKNGVLMYLDLLKS---DVRRDNYTFPFLFKGFTRDIAG---SLEKSCIVMR 113
GYS ++ + ++ S + DN+T + K + E C+++R
Sbjct: 108 LGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILR 167
Query: 114 ------VFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE 149
+FV NALI+ YC C EV +AR +F DG+ E
Sbjct: 168 RGLYSDIFVLNALITCYCRCDEVWLARHVF-------DGMSE 202
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTR 99
VF +++ + WN MI GYS+ + +YL++L N G +
Sbjct: 196 VFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSM 255
Query: 100 DIAGSLE------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
D+A +E +S I + V + NA+++ Y CG +D AR +F E D+
Sbjct: 256 DLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDE 307
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYSRI 65
+H+Q IKLG+ PH Q L Y L + VF I+ ++ WN+MI GYS++
Sbjct: 159 VHAQAIKLGM--GPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKM 216
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRV----FVQ 117
+L++ ++L+ V D +T L ++ D+ + ++ V V
Sbjct: 217 GFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVT 276
Query: 118 NALISTYCLCGEVDMARGIF 137
NALI Y CG + A+ +F
Sbjct: 277 NALIDMYAKCGHLQFAKHVF 296
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +LK +H+Q I GL + + L + E GDL+Y +F +I QP+ F++N +I+
Sbjct: 52 MKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQE-GDLRYAHLLFDQIPQPNKFMYNHLIR 110
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVM 112
GYS + +L++ ++ + + +TFPF+ K + K +
Sbjct: 111 GYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGP 170
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VQNA+++ Y C + AR +F
Sbjct: 171 HACVQNAILTAYVACRLILSARQVF 195
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
++QLKQIHS L+ H P L+ L D+ Y ++F ++ QP L+N++
Sbjct: 15 INQLKQIHS------LIIIKH-PSLATVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSL 67
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVM--- 112
I YS++ HK+ + + + SD R +T P + K + +A G S IV+
Sbjct: 68 ISTYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGI 127
Query: 113 --RVFVQNALISTYCLCGEVDMARGIF 137
V+VQ +L+ Y GE+ AR IF
Sbjct: 128 DCNVYVQTSLMDFYAKIGELGSARKIF 154
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-- 99
K F ++ Q + W+ MI GY++ + ++ + + V+ ++ T + +
Sbjct: 284 KEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSACVQLG 343
Query: 100 ------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I +E + V+V +AL+ Y CG + AR +F
Sbjct: 344 SVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVF 387
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 25 QTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SD 82
TR + +Y E + VF ++ ++F WN ++ GY R + + + +L+L+ ++
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTE 205
Query: 83 VRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMAR 134
+ DN+TFP L K T + + G K ++M +FV NA+I+ Y CG +D A
Sbjct: 206 FQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265
Query: 135 GIF 137
+F
Sbjct: 266 ELF 268
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H K +H +K+GL+ + LY K G L ++F K+ + ++ WN++I
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAM--IALYGKCGFLDEAVELFDKMPEQNLISWNSLI 283
Query: 60 KGYSRIDSHKNGVLMYLDLLKS------DVRRDNYTFPFLFKGFTRDIA----GSLEKSC 109
+G+S + LL+S DV P D+ G K
Sbjct: 284 RGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLG 343
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+V + V NALI Y CG + A +F
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILF 371
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 9 SQTIKLGLLTKPHCPKQTRYLL-----------LYEK-GDLKYECKVFRKITQPSVFLWN 56
SQ LGL + HC L+ +Y K G L + ++F ++ V WN
Sbjct: 629 SQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWN 688
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
MI G+ V ++ D+ +SD + D +TF
Sbjct: 689 VMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTF 722
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT---- 98
+F +I + ++FLWN +I+GY+ ++ V +Y + + DN+TFPF+ K
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191
Query: 99 ----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R+I + ++ VFV ALI Y CG V AR +F
Sbjct: 192 IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVF 234
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ QLKQIH+++I L T+ K L L Y +VF + +P F++N MI
Sbjct: 19 IQQLKQIHAKSIISSLSYTQFIITKIINSFL--SHACLDYATQVFNQTQEPDGFIYNAMI 76
Query: 60 KGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMRV-- 114
+ YS + + +Y + ++ D YT+PF+FK A K +++R+
Sbjct: 77 RAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGY 136
Query: 115 ----FVQNALISTYCLCGEVDMARGIF 137
F+Q++L++ Y +CGE+ A+ +F
Sbjct: 137 ELDGFLQSSLLNFYMVCGEIGNAQQVF 163
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 7 IHSQTIKLG----------LLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLW 55
I S+ +KLG ++ + + + LY K G L K+F +I + + +W
Sbjct: 218 IESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVW 277
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL--------EK 107
N++I GY +I S + + ++ S+++ D +T + + A +L EK
Sbjct: 278 NSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEK 337
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I VF+ ALI Y CG + AR +F
Sbjct: 338 KGI-WDVFIGTALIDMYAKCGFIGAARKVF 366
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++ L QIH+Q I G L+ K DL VF PS LWN+MI+
Sbjct: 45 LNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARS--VFDSTPNPSRILWNSMIR 102
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
Y+R + + MY +++ + D YTF F+ K T + G +++ +
Sbjct: 103 AYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLER 162
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VF+ L+ Y G++ AR +F
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVF 187
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDLK +VF K+ + V WN MI G S+ + V + + V + +
Sbjct: 173 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS 232
Query: 90 FPFLFKGFTRDIAGSLEKSC---IVMRVF---VQNALISTYCLCGEVDMARGIFYMSCED 143
LF G + L +S + R F V N LI Y CG+VD+AR +F +
Sbjct: 233 LLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQ 292
Query: 144 DD 145
DD
Sbjct: 293 DD 294
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH T+K + T + +Y K G F +++ + WN++I GY+
Sbjct: 450 KSIHCFTVKADM--DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIVMRVF----- 115
+I N + M+ L S + D T + D+ G+ IV F
Sbjct: 508 QIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCH 567
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V+NALI Y CG + A +F
Sbjct: 568 VKNALIDMYAKCGSLPSAEFLF 589
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ Q+KQ+H+ + G L+ P ++ + + +G + VF +I P F++NT+I
Sbjct: 21 LRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLK------SDVRRDNYTFPFLFKGFT--------RDIAGSL 105
+G + + ++ V +Y + + VR D TFPF+ + + +
Sbjct: 81 RGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHV 140
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
K+ FV+NALI + CG++ A +F +D
Sbjct: 141 VKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEARED 179
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ ++F V WN MI GY R SHK + ++ + + D T L
Sbjct: 225 GDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLL 284
Query: 95 KG------------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
R ++G + I + NALI Y CG + A +F++
Sbjct: 285 SACADSGDMDAGRRLHRFLSGRFSR--IGPSTVLGNALIDMYAKCGSMTSALEVFWL 339
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
++Q+KQ+H+Q I+ L H PK L L + +L +VF ++ +P+V L N++I
Sbjct: 32 LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLA--VRVFNQVQEPNVHLCNSLI 89
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ +++ ++ ++ + + DN+T+PFL K + + +EK +
Sbjct: 90 RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLS 149
Query: 112 MRVFVQNALISTYCLCG 128
++V NALI Y CG
Sbjct: 150 SDIYVPNALIDCYSRCG 166
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT---- 98
+F +I + ++FLWN +I+GY+ ++ V +Y + + DN+TFPF+ K
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191
Query: 99 ----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R+I + ++ VFV ALI Y CG V AR +F
Sbjct: 192 IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVF 234
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++ L QIH+Q I G L+ K DL VF PS LWN+MI+
Sbjct: 45 LNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARS--VFDSTPNPSRILWNSMIR 102
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
Y+R + + MY +++ + D YTF F+ K T + G +++ +
Sbjct: 103 AYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLER 162
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VF+ L+ Y G++ AR +F
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVF 187
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDLK +VF K+ + V WN MI G S+ + V + + V + +
Sbjct: 173 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS 232
Query: 90 FPFLFKGFTRDIAGSLEKSC---IVMRVF---VQNALISTYCLCGEVDMARGIFYMSCED 143
LF G + L +S + R F V N LI Y CG+VD+AR +F +
Sbjct: 233 LLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQ 292
Query: 144 DD 145
DD
Sbjct: 293 DD 294
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH T+K + T + +Y K G F +++ + WN++I GY+
Sbjct: 450 KSIHCFTVKADM--DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIVMRVF----- 115
+I N + M+ L S + D T + D+ G+ IV F
Sbjct: 508 QIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCH 567
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V+NALI Y CG + A +F
Sbjct: 568 VKNALIDMYAKCGSLPSAEFLF 589
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +F +++P + ++N+M +GYSR + +++++L+ + DNYTFP L
Sbjct: 76 ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135
Query: 94 FKGFTRDIAGSLEKS----CIVMR------VFVQNALISTYCLCGEVDMARGIF 137
K +A +LE+ C+ M+ V+V LI+ Y C +VD AR +F
Sbjct: 136 LKACA--VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVF 187
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H ++KLGL + CP T + E D+ VF +I +P V +N MI GY+
Sbjct: 149 RQLHCLSMKLGLDDNVYVCP--TLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYA 206
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
R + + ++ ++ ++ + T + + GSL+ K
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA--LLGSLDLGKWIHKYAKKHSFCKY 264
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V ALI + CG +D A IF
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIF 288
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + Y +F +I + FLWN+MI+GY+ +S +++Y ++L + DN+T+PF+
Sbjct: 14 GHMPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFGHKPDNFTYPFVL 73
Query: 95 KG----FTRDIAGSLEKSCIVMR----VFVQNALISTYCLCGEVDMARGIF 137
K R+I + +V V+V N+++S Y G+V AR +F
Sbjct: 74 KACGDLLLREIGRKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAARVMF 124
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 20/202 (9%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIK 60
++ K+IH+ I GL T+ + L +K GD+ Y ++F +++ P+VFL+N++I+
Sbjct: 24 NEWKKIHACIIVHGLSQSSFMV--TKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIR 81
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y+ + + + +Y LL+ + D +TFPF+FK + + G L K
Sbjct: 82 AYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPR 141
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD--------DGLHELIRIKAVDDDLHEL 163
V +NALI Y ++ A +F E D G L ++K H +
Sbjct: 142 FHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLM 201
Query: 164 FPEYLVQMLALPDTFMGEGLEV 185
+ +V A+ + G G V
Sbjct: 202 IDKTIVSWTAMISGYTGIGCYV 223
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L VF K+++ VF WN ++ GY++ + +Y +L +++R + YTFP +
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205
Query: 95 K--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
K DIA E V+R V V NALI+ Y CG++ AR +F
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ +++ VF +I +PSV LWN MI+ Y+ + + +YL +L+ V N+TFPF
Sbjct: 53 SRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPF 112
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCED 143
L K + R I + M ++V AL+ Y CG + A+ +F +S +D
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQD 172
Query: 144 DD 145
D
Sbjct: 173 RD 174
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK GL + + + +L D L Y VF I +P++ +WNTM
Sbjct: 15 LQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTM 74
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPFL K + I G + K
Sbjct: 75 FRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGY 134
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ ++V +LIS Y G A +F S D
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C +F+ ++ V WNTMI GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 279 LYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVT 338
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ F R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 339 MLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVF 396
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G ++ K+F +I V WN +I GY+ ++K + ++ +++K++V+ D T
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + ++ + + + NALI Y CGEV+ A G+F
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLF 293
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L VF K+++ VF WN ++ GY++ + +Y +L +++R + YTFP +
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205
Query: 95 K--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
K DIA E V+R V V NALI+ Y CG++ AR +F
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 38 KYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97
+Y ++F +I QP F+WNT I+G S+ + V +Y + V+ DN+TFP + K
Sbjct: 58 QYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKAC 117
Query: 98 TR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T+ + G + + V V+N L+ + CG++ +A IF
Sbjct: 118 TKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIF 165
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 22/154 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTR-------YLLLYEKGDLKYECKVFRKITQPSVF 53
+ Q Q+H+Q +K P KQTR + L GDL Y + ++ + F
Sbjct: 6 LSQAMQLHAQILK-----SPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSF 60
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLL--KSDVRRDNYTFPFLFKGFTR--------DIAG 103
NTMI+ YS+ + ++L +L + R D +T+PFL K R + G
Sbjct: 61 FHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHG 120
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ KS + +V N LI Y CG+ A +F
Sbjct: 121 LIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVF 154
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
KVF K+ V W +MI G+ D + ++ ++++ V + T + +
Sbjct: 152 KVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAG 211
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G R + G +E+ I + V+ ALI Y CG + AR +F
Sbjct: 212 AVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVF 255
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
+Q H IK G H + + LY K EC KVF +IT P + LWNTMI G+
Sbjct: 263 RQFHGMMIKSGFHGNSHV--GSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGF 320
Query: 63 SRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM--------- 112
S D ++G+ + ++ ++ R D+ +F + + + SL K +
Sbjct: 321 SLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYN 380
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
RV V NAL++ Y CG V AR +F
Sbjct: 381 RVSVNNALVAMYSKCGNVHDARRVF 405
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKG----- 96
VF + ++ WN ++ GY+R + + V +++DL+ +D + DN+TFP + K
Sbjct: 101 VFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160
Query: 97 ---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I G + K +V+ VFV NAL+ Y CG VD A +F
Sbjct: 161 DVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVF 204
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ LK++H + + H ++L Y K G L KVF I +V WN +I
Sbjct: 367 LRSLKELHGYSFRHCF---QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALI 423
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
G+++ + + + + S + D +T L + ++I G + ++ +
Sbjct: 424 GGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLE 483
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+S Y CG+ AR +F
Sbjct: 484 TDFFVGTSLLSHYIHCGKASSARVLF 509
>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
Length = 806
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL-KYECKVFRKITQPSVFLWNTMIK 60
H +QIH++ +K G + +T+ ++ Y K D + +F K+ +VF W +I
Sbjct: 61 HTGRQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIG 120
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVM 112
R+ + ++ ++++LK ++ DN+ P + K GF R I G + KS +
Sbjct: 121 VKCRVGLAEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWSGFGRGIHGYVAKSGLYG 180
Query: 113 R-VFVQNALISTYCLCGEVDMARGIF 137
VFV ++L Y CG +D AR +F
Sbjct: 181 DCVFVASSLADMYGKCGVLDDARKVF 206
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +F +++P + ++N+M +GYSR + +++++L+ + DNYTFP L
Sbjct: 76 ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135
Query: 94 FKGFTRDIAGSLEKS----CIVMR------VFVQNALISTYCLCGEVDMARGIF 137
K +A +LE+ C+ M+ V+V LI+ Y C +VD AR +F
Sbjct: 136 LKACA--VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF 187
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H ++KLGL + CP T + E D+ VF +I +P V +N MI GY+
Sbjct: 149 RQLHCLSMKLGLDDNVYVCP--TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYA 206
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
R + + ++ ++ ++ + T + + GSL+ K
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA--LLGSLDLGKWIHKYAKKHSFCKY 264
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V ALI + CG +D A IF
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIF 288
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 4 LKQ---IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
LKQ IHS I+ G + H T+ ++ Y K G+ KVF ++ + +V W I
Sbjct: 53 LKQGCLIHSHIIRNGFDSNLHLS--TKLIIFYVKFGETINARKVFDRMPERNVVSWTAQI 110
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
GY++ +++ +L++ + ++ VR + +T+ + + T I G ++K+ +
Sbjct: 111 SGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFI 170
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+FVQ+AL+ + CG ++ AR +F E D
Sbjct: 171 GNLFVQSALVDLHSKCGNMEDARYLFETMSERD 203
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ +LKQIH+Q + GLL P Q + L +L Y +V P++F +N+MI
Sbjct: 22 LRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMI 81
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFK--------GFTRDIAGSLEKSC 109
+ +S+ + Y +L S + DNYTF FL + G + G+ K
Sbjct: 82 RAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYG 141
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VQ+ LI Y G +D +F CE D
Sbjct: 142 FEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPD 176
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ + K+F K++ WN MI GY + + + ++ + + V+ + + +
Sbjct: 191 GDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVL 250
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+ R +E++ + M + + ALI Y CG ++ A +F+
Sbjct: 251 SACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFW 302
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H+ + GL +P ++ + Y GD+ VF I +PS L+N+MI+ Y+R
Sbjct: 91 QVHAHMLLRGL--QPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYAR 148
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMRV------FV 116
+ V Y + D +TFPF+ K ++ + K +++R+ +V
Sbjct: 149 YGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV 208
Query: 117 QNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
+LI Y CGE++ A +F M+ D + L+
Sbjct: 209 ATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALL 244
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL-----LLYEKGDLKYECKVFRKITQPSVFLW 55
+H+ + +H+ + LG +P CP + + + G L++ FR + + W
Sbjct: 43 LHEARTLHALLLVLGFF-QPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAW 101
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC------ 109
N +++G + + Y +L+ V DNYT+P + K + A L +
Sbjct: 102 NAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHG 161
Query: 110 -IVMRVFVQNALISTYCLCGEVDMARGIF 137
V+VQ A+I + CG V+ AR +F
Sbjct: 162 KTKANVYVQCAVIDMFAKCGSVEDARRMF 190
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q K++H+ +K GL++ + +++Y G +K +F + + +WN+MI
Sbjct: 350 LKQGKEMHNFVLKEGLMSD--VVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMI 407
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
GY+ + ++ + + ++ R + T + T ++I G + KS +
Sbjct: 408 VGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLG 467
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V V N+LI Y CG +++ +F
Sbjct: 468 LNVSVGNSLIDMYSKCGFLELGEKVF 493
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ ++KQIH+Q + G+L PH Q + L+ +L Y K+ P++F N+MI
Sbjct: 22 LKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSMI 81
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRR---DNYTFPFLFKGFTR---DIAGSLEKSCIVMR 113
+ YS+ + Y ++L S+ DNYTF FL + + + G ++
Sbjct: 82 RAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKH 141
Query: 114 VF-----VQNALISTYCLCGEVDMARGIFYMSCEDD 144
F VQ L+ Y G + +F + E D
Sbjct: 142 GFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 18 TKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYL 76
+P QT L K GD+ + K+F ++ + WN MI GY++ + + ++
Sbjct: 174 VEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFH 233
Query: 77 DLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCG 128
+ V+ + + + T R + +E+ + M V + AL+ Y CG
Sbjct: 234 LMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCG 293
Query: 129 EVDMARGIFY 138
VD A +F+
Sbjct: 294 NVDRAMQVFW 303
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ LKQIH+ + GL++ + Y L G LKY K+F +I +P V + N ++
Sbjct: 25 IRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVL 84
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G ++ + V +Y ++ K V D YTF F+ K ++ G + + V
Sbjct: 85 RGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFV 144
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +V+NALI + CG++ +A +F
Sbjct: 145 LNEYVKNALILFHANCGDLGIASELF 170
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 17/233 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLK+IH+ ++ G K Q L+ GD+ Y +VF ++ +P +FLWNT+ KGY
Sbjct: 26 QLKKIHAIVLRTGFSEKNSLLTQLLENLVV-IGDMCYARQVFDEMHKPRIFLWNTLFKGY 84
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV------ 114
R +L+Y + VR D +T+PF+ K ++ D + V++
Sbjct: 85 VRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLG 144
Query: 115 FVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLA 173
V L+ Y GE+ A +F M +D + + + V + EY +M A
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAV-CVQTGNSAIALEYFNKMCA 203
Query: 174 LPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNS 226
D + V+ A ++G+LE G R + D ++ N+
Sbjct: 204 --DAVQFDSFTVVSMLSA----CGQLGSLEIGEEIYDRARKEEIDCNIIVENA 250
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RD 100
+F +I QP + L+NTM +GY+R D+ ++ +L S + D+YTFP L K +
Sbjct: 77 LFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKA 136
Query: 101 IAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ + C+ ++ V+V LI+ Y C E+D AR +F
Sbjct: 137 LEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVF 179
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H IKLGL + CP + D +VF KI +P V +N MI GY+
Sbjct: 141 RQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCAR--RVFDKIWEPCVVTYNAMITGYA 198
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
R + ++ +L +++ + T + + G+L+ K+
Sbjct: 199 RGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCA--LLGALDLGKWMHEYVKKNGFNRF 256
Query: 114 VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAV 156
V V ALI Y CG +D A +F M+ D +I A+
Sbjct: 257 VKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAI 300
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQ--PSVFLWNTMI 59
LKQIHS IK GL K + L DL Y +F I P++F+WNT+I
Sbjct: 40 SLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLI 99
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--------CIV 111
+ +S + + + ++ +L S + +++TFP LFK + A K +
Sbjct: 100 RAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALH 159
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V +LI Y GE+ AR +F
Sbjct: 160 LHPHVHTSLIHMYSQVGELRHARLVF 185
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G++ K+F + V LWNTMI GY + ++ ++++ +L+ +V ++ T
Sbjct: 303 MYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVT 362
Query: 90 FPFLF------------KGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + K I +L+ + V V + ++I Y CG V++A +F
Sbjct: 363 FLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVF 422
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 13 KLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNG 71
+ GL T+P +T+ L +Y K G + KVF + + ++F W+ MI YSR + +
Sbjct: 106 RFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREV 165
Query: 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF----------VQNALI 121
++ ++K V D++ FP + +G G +E ++ V V N+++
Sbjct: 166 AKLFRLMMKDGVLPDDFLFPKILQGCAN--CGDVEAGKVIHSVVIKLGMSSCLRVSNSIL 223
Query: 122 STYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+ Y CGE+D A F E D + + + HE E + +M
Sbjct: 224 AVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEM 273
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
K IHS IKLG+ C + + +L +Y K G+L + K FR++ + V WN+++ Y
Sbjct: 201 KVIHSVVIKLGM---SSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAY 257
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
+ H+ V + ++ K + T+ L G+ + D+ +E I V
Sbjct: 258 CQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADV 317
Query: 115 FVQNALISTYCLCG----EVDMARGIF 137
F A+IS G +DM R +F
Sbjct: 318 FTWTAMISGLIHNGMRYQALDMFRKMF 344
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
++Q ++HS +K+G + + +Y K G L+ KVF + V+ WN+MI
Sbjct: 368 INQGSEVHSIAVKMGFIDDVLVGNS--LVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMI 425
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
GY + ++ + +++R + T+ + G+ + D+ +EK V
Sbjct: 426 TGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKV 485
Query: 112 MR-VFVQNALISTYCLCGEVDMARGIF 137
R N +I+ Y G+ D A +F
Sbjct: 486 QRNTATWNLIIAGYIQNGKKDEALELF 512
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
LKQ+H+ I GL+ H +R LL+ + +F I P++FL+NT+I +
Sbjct: 25 LKQVHAHMITTGLIF--HTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLA 82
Query: 64 RIDSHKN-GVLMYLDLLK-SDVRRDNYTFPFLFK------------GFTRDIAGSLEKSC 109
I H + +Y +L + ++ + +TFP LFK + LE +C
Sbjct: 83 NIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTC 142
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
FVQ AL++ Y CG+V R +F
Sbjct: 143 ---DPFVQAALLNYYAKCGKVGACRYLF 167
>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 764
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+HSQ IKLG + QT L +Y GDL+ ++F + WNTMI G R
Sbjct: 134 LHSQIIKLGY--SDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRN 191
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR------DIAGSLEKSCIVMRVF---- 115
D ++G++++ +L S V +T+ + ++ + + IV +
Sbjct: 192 DKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILADLP 251
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V+NAL+ YC CG++ A +F
Sbjct: 252 VENALLDMYCSCGDMKEAFYVF 273
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH++ I +L P + L +Y GD+K VF KI P++ WN++I G S
Sbjct: 235 KLIHARMIVSDILAD--LPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCS 292
Query: 64 RIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ +LMY LL+ S R D YTF + + G + K V
Sbjct: 293 ENGFGEQAILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSV 352
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FV L+S Y GE + A+ +F + E D
Sbjct: 353 FVGTTLLSMYFKNGEAESAQKVFGVITERD 382
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H Q KLG + T + ++ G+ + KVF IT+ V LW MI G SR
Sbjct: 337 KLLHGQVTKLGY-ERSVFVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESR 395
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA----GSLEKSCIVMRVF----- 115
+ + + V +++++ + R D ++ + G D+A G + S + F
Sbjct: 396 VGNSECAVQLFIEMYREKNRTDGFSLSSVL-GACSDMAMLRQGQVFHSLAIKTGFDNVMS 454
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V AL+ Y G+ + A IF + D
Sbjct: 455 VSGALVDMYGKNGKYETAESIFSLVSNPD 483
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 6 QIHSQTIKLGLLTKPHCP-KQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
Q+H+ + G + P K + +Y + G L+ K+F K+ + +V +N + YS
Sbjct: 28 QLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPERNVVSYNALYSAYS 87
Query: 64 RIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT--RDI-AGSLEKSCIVM-----RV 114
R + + ++ + S+ ++ ++ TF L + T D+ GSL S I+ V
Sbjct: 88 RNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNV 147
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
VQ +++ Y CG+++ AR IF
Sbjct: 148 VVQTSVLGMYSSCGDLESARRIF 170
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +F +++P + ++N++ +GYSR + +++++L+ D+ DNYTFP L
Sbjct: 78 ESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSL 137
Query: 94 FKGFTRDIAGSLEKS----CIVMR------VFVQNALISTYCLCGEVDMARGIF 137
K +A +LE+ C+ M+ V+V LI+ Y C +VD AR +F
Sbjct: 138 LKACA--VAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVF 189
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H ++KLG+ + CP T + E D+ VF +I +P V +N MI GY+
Sbjct: 151 RQLHCLSMKLGVDDNVYVCP--TLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYA 208
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
R + + ++ ++ +++ + T + + GSL+ K
Sbjct: 209 RRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCA--LLGSLDLGKWIHEYAKKHGFCKY 266
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V ALI + CG +D A IF
Sbjct: 267 VKVNTALIDMFAKCGSLDDAVSIF 290
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPK--QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
Q +Q+H++ L K H T+ L +YEK G LK KVF ++T+ ++F WN M+
Sbjct: 64 QGQQLHAR------LLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMM 117
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ + + +Y ++ V D TFP + K +I G K
Sbjct: 118 GAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFG 177
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV NALI+ Y CG++ AR +F
Sbjct: 178 EFVFVCNALIAMYGKCGDLGGARVLF 203
>gi|297733980|emb|CBI15227.3| unnamed protein product [Vitis vinifera]
Length = 491
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----GDLKYECKVFRKITQPSVFLWN 56
+ LKQ+H+ K GL T P + LLL+ L Y ++F P VF+ N
Sbjct: 18 LKNLKQVHAYVCKTGLDTDPIIAGK---LLLHSAVSVPDALDYARRLFLHFPNPDVFMHN 74
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVM- 112
T+I+G + D+ +N ++ ++++ + D+++F FL K R + ++ C +
Sbjct: 75 TLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIV 134
Query: 113 -----RVFVQNALISTYCLCGEVDMARGIF 137
+FV L+S Y CG V A+ +F
Sbjct: 135 HGLDTHLFVGTTLVSMYSECGFVAFAKKVF 164
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H Q I GL T H T + +Y E G + + KVF ++ +P+V WN ++ R
Sbjct: 127 QLHCQAIVHGLDT--HLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEK 107
K + ++ ++ +S +R D F + + AG +EK
Sbjct: 185 CGDVKEAIQLFHEMEESGIRPDGIAFISILYACSH--AGLIEK 225
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+++Q K GL P K +L L G L Y +F + F+ NTMI+
Sbjct: 127 EVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDNPFVCNTMIRA 186
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------------DIA-GSLE 106
Y++ + +Y + + D++ D++T+PF K R DIA E
Sbjct: 187 YAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDIACKGAE 246
Query: 107 KSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
C + R+ F+QN+L+ Y CG +D+AR +F
Sbjct: 247 IHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVF 283
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 26 TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85
RY+ L + D K VF+++ + WN+MI GY +I + + ++ ++ ++V
Sbjct: 330 ARYIRLGKIEDAKV---VFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEA 386
Query: 86 DNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T + R I SL++ + ++ NAL+ Y CG +++A +F
Sbjct: 387 TDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVF 446
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 1 MHQLKQIHSQTIKLGLLT-KPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI + +GL + K + + GD Y ++F I PS+F++N MI
Sbjct: 21 MSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
K + + S ++ + ++ L + V DNYT+P++ KG
Sbjct: 81 KAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKG 117
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ +K GL P+ ++ +Y E G ++ +VF ++ WN MI GY
Sbjct: 128 EKVHAFVVKTGLEFDPYVCNS--FMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYV 185
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPF-------------LFKGFTRDIAGSLEKSCI 110
R + V +Y + + N L K IA L+ + I
Sbjct: 186 RCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTI 245
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ NAL+ YC CG V +AR IF
Sbjct: 246 M-----GNALLDMYCKCGHVSVAREIF 267
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++F I +FLWN ++ Y++I +++ V ++ + + +R D+YTF +
Sbjct: 106 GDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVL 165
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
KGF + + G + K V N+LI+ Y CGEV+ AR +F
Sbjct: 166 KGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILF 216
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+L +VF K+ + ++ W ++I + R H + ++ ++ +R D Y
Sbjct: 303 MYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYA 362
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R++ ++K+ + + V NAL++ Y CG ++ A IF
Sbjct: 363 VTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIF 418
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 23 PKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
P + +Y K G ++ +F ++ ++ WNTMI GYS+ + ++LD+ K
Sbjct: 396 PVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK- 454
Query: 82 DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
++ D+ T + R+I G + + + V AL+ Y CG + +A
Sbjct: 455 QLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLA 514
Query: 134 RGIFYM 139
+ +F M
Sbjct: 515 QQLFDM 520
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M Q K IH+ I GL L K + L G L Y +F +I P++F +NT+I
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFKGFTRDI---------AGSLEKS 108
+ YSR S L Y L+ D V D +TFPF+ T + L+
Sbjct: 77 RAYSR-SSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNG 135
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
VQ AL+ Y C + AR +F
Sbjct: 136 VASSDRHVQTALVRFYAECCAMGDARKLF 164
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----GDLKYECKVFRKITQPSVFLWNTMIK 60
KQIH+ +K G+ + QT + Y + GD + K+F +I V WN ++
Sbjct: 125 KQIHNWVLKNGVASSDR-HVQTALVRFYAECCAMGDAR---KLFDEIPNLDVVQWNVLLN 180
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE-----------KSC 109
GY R + + ++L S V D + KG + G+L+ +
Sbjct: 181 GYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQ--LGALQQGKWIHEYVTKRKW 238
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ VF+ AL+ Y CG +D + +F
Sbjct: 239 LEADVFIGTALVDMYAKCGCIDRSVEVF 266
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G++ + +VF K+ + VF WN M+ GY ++ + + +Y +L + +R D YT
Sbjct: 140 MLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYT 199
Query: 90 FPFLFK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
FP + + G D E V+R V V NAL++ Y CG++ AR +F
Sbjct: 200 FPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVF 255
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 3 QLKQIHSQTIKL-----GLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT 57
QLKQIH++ I+ LL + C + Y G + Y VF ++ P +F WN
Sbjct: 35 QLKQIHARIIRFRLTHDQLLIRKLCQISSSY------GKIDYASLVFDQLNDPDIFTWNV 88
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSC 109
MI+ Y+ + + ++ D++ D +T+PF+ F R G K
Sbjct: 89 MIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAIKMG 148
Query: 110 IVMRVFVQNALISTYC-LCGEVDMARGIF 137
V+VQN +++ Y + G+VD +F
Sbjct: 149 FWSDVYVQNNMMNLYFKIGGDVDDGWKVF 177
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L +VF +I +V W MI GY + D+ ++ +L +VR + +T L
Sbjct: 199 GKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLI 258
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K T GSL+ K+ + F+ AL+ Y CG +D A +F
Sbjct: 259 KACTD--LGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVF 309
>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1198
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 1 MHQLKQIHSQTIK----LGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
+H LK +H+ ++ L L + Q L G + + +F FLWN
Sbjct: 486 LHSLKALHASMLRSYLHLNLYFFTNLVAQYTSL-----GFISHAYSLFSTSNPTDAFLWN 540
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKS 108
MI+G+ + + +L+Y +++ ++ N+T F+FK F + + K
Sbjct: 541 VMIRGFVDHAQYYDAILLYRQMVQLSIKPTNFTLTFVFKACGCLRDIEFGKQVHDDAVKD 600
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV N+LI+ Y CG +++R +F
Sbjct: 601 GYKLDLFVLNSLITMYARCGSYELSRQVF 629
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H +K G K + +Y + G + +VF K++ + WN+MI
Sbjct: 591 KQVHDDAVKDGY--KLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNGICWNSMIGACL 648
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS-----LEKSCIVMRVFVQN 118
+ + GV ++ + +R D + + + G+ + + +VQN
Sbjct: 649 ITERYDEGVKLFWQMSGEGIRLDRAALLNVMRCVRTENDGNGVSRVARDAGFNLDQYVQN 708
Query: 119 ALISTYCLCGEVDMARGIF 137
A I Y CG +D+AR IF
Sbjct: 709 AAIGMYAKCGRLDLARSIF 727
>gi|224084249|ref|XP_002307242.1| predicted protein [Populus trichocarpa]
gi|222856691|gb|EEE94238.1| predicted protein [Populus trichocarpa]
Length = 561
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH Q++K G QT L +Y GDL+ KVF + Q LWN+MI G +
Sbjct: 32 IHGQSVKHGFFNDVFV--QTSLLGMYSNCGDLESANKVFGCVVQKDAVLWNSMIFGNLKN 89
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRVF----VQ 117
+ + GVL++ +++ + +T+ + + + IV+ V +Q
Sbjct: 90 EKLEEGVLLFGKMVRHGIVPTEFTYSMILNACGKLGDCRWGQVIHAQVIVLNVLADLPLQ 149
Query: 118 NALISTYCLCGEVDMARGIF 137
NAL+ YC CG+ + +F
Sbjct: 150 NALLDMYCSCGDTETGFNVF 169
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+Q I L +L P Q L +Y GD + VF KI P + WN+MI GY+
Sbjct: 133 IHAQVIVLNVLAD--LPLQNALLDMYCSCGDTETGFNVFNKIENPDLVSWNSMISGYAEN 190
Query: 66 DSHKNGVLMYLDLLKSDV-RRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ + ++L L+ + + D YTF + + + + + K VF+
Sbjct: 191 GEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFSATCYGKPLHAQVLKVGSERSVFI 250
Query: 117 QNALISTYCLCGEVDMARGIFYM 139
L+S Y G+++ A +F M
Sbjct: 251 GTTLLSMYLKNGDIESAEQVFNM 273
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
++Q + IH+QT+K G + ++ Y K GDL +F +++ P + WN+M+
Sbjct: 330 LNQGEMIHTQTVKRGCDAEISVCGSLVHM--YAKNGDLHAARSIFSQVSNPDLKCWNSML 387
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
GYS+ + ++++ +L + R D TF L
Sbjct: 388 GGYSQHGMAEEAMIIFAKILVNGQRPDQVTFLSLLSA 424
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +H+Q +K+G ++ T L +Y K GD++ +VF I V LW MI G+S
Sbjct: 233 KPLHAQVLKVG--SERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHS 290
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA----GSLEKSCIVMR-----V 114
R+ ++ + ++ + + D++ D+A G + + V R +
Sbjct: 291 RLGGGESAIKLFSMMCHEGYKIDSFALSGALSA-CADLATLNQGEMIHTQTVKRGCDAEI 349
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V +L+ Y G++ AR IF
Sbjct: 350 SVCGSLVHMYAKNGDLHAARSIF 372
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 26/155 (16%)
Query: 1 MHQLKQIHSQTIK------LGLLTK--PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSV 52
+ +LKQI + +IK L +LTK C + + Y ++F I QP +
Sbjct: 39 LKELKQIQAFSIKTHLQNDLQILTKLINSCTQNP------TTASMDYAHQLFEAIPQPDI 92
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---- 108
L+N+M +GYSR ++ + +++ L ++ D+YTFP L K +A + ++
Sbjct: 93 VLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACV--VAKAFQQGKQLH 150
Query: 109 CIVMRV------FVQNALISTYCLCGEVDMARGIF 137
C+ +++ +V LI+ Y C +VD A+ +F
Sbjct: 151 CLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVF 185
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
Q KQ+H IKLGL P+ CP T + D+ +VF +I +P V +N +I
Sbjct: 143 FQQGKQLHCLAIKLGLNENPYVCP--TLINMYAGCNDVDGAQRVFDEILEPCVVSYNAII 200
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY+R + ++ L ++ ++ T + + I ++K+ +
Sbjct: 201 TGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLD 260
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAV---DDDLHELFPEY 167
V V ALI Y CG +D A +F MS D +I A+ D+ +F E
Sbjct: 261 KYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEE- 319
Query: 168 LVQMLALPD--TFMG 180
+ + PD TF+G
Sbjct: 320 MARAKVQPDEITFLG 334
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP-SVFLWNTMIKGYS 63
Q+H++++KL + PH T L LY + G L K F ++ QP S W +I Y
Sbjct: 96 QLHARSLKLPSHSNPHV--LTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYM 153
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + S VR D++T + R ++ + EK I VF
Sbjct: 154 DAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVF 213
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+D ARG+F
Sbjct: 214 VATAAVDLYVKCGEMDKARGVF 235
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKP--------HCPKQTRYLLLYEKGDLKYECKVFRKITQPSV 52
M L+Q+H+ +LT+P K + L G++ Y VF +I P++
Sbjct: 1 MRVLRQLHAH-----ILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNI 55
Query: 53 FLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVRRDN-YTFPFLFK--GFTRDIAGSLEKS 108
F WN++IKGYS+I + K + ++ L ++ N +T F+ K L+
Sbjct: 56 FSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVH 115
Query: 109 CIVMR------VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI----RIKAVD 157
V++ +FVQ +L++ Y C E+ AR +F M + +I R+ AVD
Sbjct: 116 SHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVD 175
Query: 158 DDLHELFPE 166
+ + ELF E
Sbjct: 176 EAM-ELFRE 183
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+HS +K G + QT + Y K + + + KVF ++ ++ W MI G++R
Sbjct: 113 QVHSHVLKDGFGSSLFV--QTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHAR 170
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCI----VMRVFV---- 116
+ + + ++ ++ K+ ++ D T + +AG+L+ C + + FV
Sbjct: 171 VGAVDEAMELFREMQKAGIQPDAMTLVSVVSACA--VAGALDIGCWLHAYIEKYFVLTDL 228
Query: 117 --QNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
AL+ Y CG ++ A+ +F +M +D +I
Sbjct: 229 ELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMI 266
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 24 KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
K R Y+K D Y +F +I P F WN MI+ Y+ + + +L+Y ++
Sbjct: 69 KLLRLCFSYQKVD--YATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGF 126
Query: 84 RRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
D +TFPF+ K +++ G K+ F+ N L+ Y CG++D AR
Sbjct: 127 SPDKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARK 186
Query: 136 IF 137
+F
Sbjct: 187 LF 188
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 44/174 (25%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT------- 57
K++H IK G K T L ++ GDL Y K+F K+ SV W T
Sbjct: 150 KEVHGFAIKTGFW-KDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVA 208
Query: 58 ------------------------MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
MI GY + + ++ + ++VR + +T L
Sbjct: 209 CGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGL 268
Query: 94 FKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T GSLE ++ + VF+ ALI Y CG ++ A+ +F
Sbjct: 269 LRACTE--LGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVF 320
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL--KYECKVFRKITQPSVFLWNTMIK 60
Q+KQ H++ + LGL L L Y ++ I+ P+VF N MI+
Sbjct: 46 QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIR 105
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRDIA--------GSLEKSCIV 111
+ + D ++ + +Y + +S V N +T F+ + + A + K V
Sbjct: 106 CFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFV 165
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV+NALI YC C V+ A+ +F
Sbjct: 166 KDVFVRNALIHLYCTCCRVESAKQVF 191
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
+Q HS+ + LGL + T+ + Y Y + VF + +VFLWN++I GY+
Sbjct: 43 RQSHSRILSLGL--SQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYA 100
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ + SDV D++T L K + + I G + V
Sbjct: 101 KNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTV 160
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDL 160
V N+++S YC CG + +R +F M+ + + LI AV +L
Sbjct: 161 VANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNL 206
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN------ 87
G+L +VF ++ +VF W MI GY + ++ D+ D N
Sbjct: 203 SGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVS 262
Query: 88 -----YTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+F L G R I G + + V + NALI Y CG +D AR +F E
Sbjct: 263 VLPACSSFSGLLSG--RQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF----E 316
Query: 143 DDD 145
DD
Sbjct: 317 DDS 319
>gi|413941642|gb|AFW74291.1| hypothetical protein ZEAMMB73_987423 [Zea mays]
Length = 671
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDL-KYECKVFRKITQPSVFLWNTMIKGY 62
+Q H++ + LGL P P + + GDL + V R + F WN +I GY
Sbjct: 66 EQAHARAVALGLGAHPSVLPGLASFYI--ALGDLPAAQASVERAAGKARAFPWNLLIWGY 123
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRD--IAGSLEKSCIVMR----V 114
+ + +L Y +L V D +T+P + + G RD I +EK + R +
Sbjct: 124 ADRGLWDDVILAYQKMLALGVAADRFTYPSVLRTCGELRDSAIGRGIEKRILTWRYGLDM 183
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+V NAL+ Y CGE+ AR +F
Sbjct: 184 YVWNALVGMYAKCGEMKDARRVF 206
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--D 100
+FR + S+ WN+++ G+ +D + + ++ +++ S V ++ T + R
Sbjct: 338 LFRTCSTQSIVTWNSLLAGFGFMDQVEEAIFVFREMIYSSVFPNDVTVLTMLSLSARFGH 397
Query: 101 IAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRI 153
+ E C + + +QN+L+ Y G++ A +F M C+D LI
Sbjct: 398 LCHGREMHCYIFKHGLGASNILQNSLVDMYSKSGQMATANRVFDQMQCQDRHAYTSLILG 457
Query: 154 KAVDDDLH---ELFPEYLVQ 170
+ + H +LF E +V
Sbjct: 458 YGMQREGHLSLKLFDEMIVN 477
>gi|297739162|emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIH+QTI G+ + + + L G + Y +F +I +P +F+ NT+I
Sbjct: 84 LKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLI 143
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVR-RDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
+ Y+ + + V+ Y ++ +S V D +TFP L K + I + K
Sbjct: 144 RAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGW 203
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V V N L+ Y CG ++ A +F + E DD
Sbjct: 204 SSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDD 238
>gi|147772239|emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]
Length = 901
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M QL QI + I GL KP + + + D+ Y +FR I P N +IK
Sbjct: 385 MRQLSQIQAYLIISGLFRKPFVASKV-LKVSADYADVNYTILIFRSIDSPDTVCVNAVIK 443
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVM 112
YS ++ Y + L++ +++TFP LF + G K+ +
Sbjct: 444 AYSISSVAHQALVFYFETLRNGFMCNSFTFPPLFSCCRKXGCVEYGEKFHGQAIKNGVDN 503
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+ VQN+++ Y CG V+ A +F
Sbjct: 504 VLDVQNSMVHMYGCCGVVEXAEKVF 528
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLKQ+H + I+ GL T + L G +KY VF ++ P VF WN MI+ Y
Sbjct: 39 QLKQVHGKIIRYGL-TYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAPDVFTWNVMIRAY 97
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVM----RV 114
+ S K L++ +L D +T+P + D+ I M +
Sbjct: 98 TIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHALAIKMGFWGDL 157
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSC 141
+VQN +++ Y C VD +F C
Sbjct: 158 YVQNTMMNLYFKCENVDDGWNVFDKMC 184
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L ++F ++ +V W +I GY + ++ + +VR + YT L
Sbjct: 202 GKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLV 261
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
+ T GSL+ K+ + F+ ALI Y CG +D AR +F M
Sbjct: 262 RACTE--MGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDM 314
>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
L QI +Q I GL + P+ ++ + GD+ Y +F+ I P F+ N ++K Y
Sbjct: 66 HLYQIQAQLITCGLFSL-WSPRLLKHFADF--GDIDYTIFIFKFIASPGTFVVNNVVKAY 122
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIVMRV 114
S ++ Y ++LKS ++YTF LF + G K+ + +
Sbjct: 123 SLSSEPNKALVFYFEMLKSGFCPNSYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRIL 182
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V+N+LI Y CG++ +A+ +F
Sbjct: 183 PVENSLIHCYGCCGDMGLAKKVF 205
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L +F + + +V WN +I GY + ++ ++++ ++ +R ++ T +
Sbjct: 227 GELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVLMLFRKMMNDGMRGNDSTIVSVL 286
Query: 95 KGF--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + G + K M V + LI Y C +V+MAR IF
Sbjct: 287 SACGRSARLREGRSVHGFIVKKFSSMNVIHETTLIDMYNRCHKVEMARRIF 337
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RD 100
+ + FLWNT+I+GYS I G+ +Y +++ VR D++TFPF+ K R+
Sbjct: 4 RTTAFLWNTLIRGYS-IAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGRE 62
Query: 101 IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ GS+ K VFV N L+S Y CG + A +F
Sbjct: 63 VHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVF 99
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+++I +G + Y K G LK VF + V +N +I G+S
Sbjct: 264 KEIHARSIHMGCAFDLFVSNALTDM--YAKSGHLKLARNVFDTSLRDEV-SYNILIVGHS 320
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ ++ +++DN +F ++I G L + + +F
Sbjct: 321 QTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLF 380
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+L+ Y CG + +AR IF
Sbjct: 381 VANSLLDFYTKCGRIGLARNIF 402
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H +KLG + L Y G L+ +VF ++ + + WNTMI +S
Sbjct: 61 REVHGSVVKLGFESDVFVGNTL--LSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFS 118
Query: 64 RIDSH-KNGVLMYLDLLKSDVRRDNYT----FPFL----FKGFTRDIAGSLEKSCIVMRV 114
H ++ + M+ ++ ++ ++ T P L F R++ GS + + +
Sbjct: 119 VNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDI 178
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
F+ N+LI Y G A +FY
Sbjct: 179 FIANSLIDMYAKSGHSTEASNVFY 202
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
+++H +I++GL + + +Y K E VF K+ +V WN MI ++
Sbjct: 163 REVHGSSIRMGLESDIFIANSL--IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFA 220
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI-AGSLEKSCIVMRV 114
+ V + + ++ TF + R +I A S+ C +
Sbjct: 221 QNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGC-AFDL 279
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHE---LFPEYLVQM 171
FV NAL Y G + +AR +F S D+ + LI + D E LF E +Q+
Sbjct: 280 FVSNALTDMYAKSGHLKLARNVFDTSLRDEVSYNILIVGHSQTSDCSESLSLFSE--MQL 337
Query: 172 LALPD---TFMG 180
+ L +FMG
Sbjct: 338 MGLKQDNVSFMG 349
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
++Q+KQ+H+Q I+ L H PK L L + +L +VF ++ +P+V L N++I
Sbjct: 32 LNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLAL--RVFNQVQEPNVHLCNSLI 89
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ ++ ++ ++ + + DN+T+PFL K + + +EK +
Sbjct: 90 RAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLS 149
Query: 112 MRVFVQNALISTYCLCG 128
++V NALI Y CG
Sbjct: 150 SDIYVPNALIDCYSRCG 166
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G+ + +VF K+ + VF WN M+ GY + + + +Y ++ + VR D YT
Sbjct: 138 MLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYT 197
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FP + + R++ + + V V NAL++ Y CG+V AR +F
Sbjct: 198 FPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVF 253
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ ++ G + + +Y K GD+ KVF + WN MI G+
Sbjct: 215 REVHAHVLRFGFAEEVDVLNA--LMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHF 272
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
G+ ++L +L+ +V+ + T + F +++ G K V
Sbjct: 273 ENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVA 332
Query: 116 VQNALISTYCLCGEVDMARGIF 137
N+LI Y G + AR +F
Sbjct: 333 FCNSLIQMYASLGMMGQARTVF 354
>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 704
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q + IH+Q I +L P Q L + Y GD + +F +I PS+ WN+MI
Sbjct: 229 QGRIIHAQVIVSNIL--PDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISW 286
Query: 62 YSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
+++ + + + +++ LL S + D YTF + + + + + K+ +
Sbjct: 287 FAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQW 346
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VF+ NAL+S Y +V+ ARG+F + E D
Sbjct: 347 SVFIGNALLSMYFRNSDVEAARGVFSLMEEKD 378
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H Q ++ G + C QT L +Y GDL+ CKVF + WN+MI GY +
Sbjct: 132 LHGQVLQFGYVNDI-CV-QTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLKN 189
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
D K + ++ ++++S +T + R I + S I+ +Q
Sbjct: 190 DRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSALQ 249
Query: 118 NALISTYCLCGEVDMARGIF 137
NAL+ Y CG+ A +F
Sbjct: 250 NALLDMYYSCGDRRTALTLF 269
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q + +H+Q +K G + + +Y K G+L+ +F ++ P + WN+MI
Sbjct: 430 LKQGQMLHTQAVKTG--CEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDLKCWNSMI 487
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
GYS + V+++ ++L+ + D TF L
Sbjct: 488 GGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSA 524
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKP--------HCPKQTRYLLLYEKGDLKYECKVFRKITQPSV 52
M L+Q+H+ +LT+P K + L G++ Y VF +I P++
Sbjct: 1 MRVLRQLHAH-----ILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNI 55
Query: 53 FLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVRRDN-YTFPFLFK--GFTRDIAGSLEKS 108
F WN++IKGYS+I + K + ++ L ++ N +T F+ K L+
Sbjct: 56 FSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVH 115
Query: 109 CIVMR------VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI----RIKAVD 157
V++ +FVQ +L++ Y C E+ AR +F M + +I R+ AVD
Sbjct: 116 SHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVD 175
Query: 158 DDLHELFPE 166
+ + ELF E
Sbjct: 176 EAM-ELFRE 183
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+HS +K G + QT + Y K + + + KVF ++ ++ W MI G++R
Sbjct: 113 QVHSHVLKDGFGSSLFV--QTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHAR 170
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL----------EKSCIVMRV 114
+ + + ++ ++ K+ ++ D T + +AG+L EK ++ +
Sbjct: 171 VGAVDEAMELFREMQKAGIQPDAMTLVSVVSACA--VAGALDIGYWLHAYIEKYFVLTDL 228
Query: 115 FVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
+ AL+ Y CG ++ A+ +F +M +D +I
Sbjct: 229 ELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMI 266
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
Y +FR+I P+V+++N+MIKGY++ ++ + +Y +L++ D++TFPF+ K
Sbjct: 57 FNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKA 116
Query: 97 --FTRD-IAGSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
F D ++G SCI+ V+V L++ Y C ++ +F
Sbjct: 117 CSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVF 165
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 14/155 (9%)
Query: 5 KQIHSQTIKLG-----LLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTM 58
+ +H + K G + + T + +Y K G L ++F K+ + ++ WN M
Sbjct: 228 RWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCM 287
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
I Y++ + + + ++ +L + D TF + R + L KS +
Sbjct: 288 INAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNM 347
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
+ + AL+ Y GE+ A+ IF S E D
Sbjct: 348 AKDIALATALLDMYAKNGELGSAQKIFNNSLEKKD 382
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 23 PKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78
P + R LL +G + + VF +I +P F++NT+I+G + + ++ V +Y +
Sbjct: 10 PSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM 69
Query: 79 L----KSDVRRDNYTFPFLFKGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCL 126
L VR D TFPF+ + T AG + K+ FV+NALI +
Sbjct: 70 LRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHAS 129
Query: 127 CGEVDMARGIFYMSCEDD 144
CG + +A +F +D
Sbjct: 130 CGNLGIAAALFDGRARED 147
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++GD+ ++F ++ + V WN MI GY R SH + + ++ + + + D T
Sbjct: 191 KRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 250
Query: 93 LFKGFTR----DIAGSLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142
L D+ L S M V + NALI Y CG + A +F+ S
Sbjct: 251 LLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFW-SMR 309
Query: 143 DDD 145
D D
Sbjct: 310 DKD 312
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
LK+IH+Q I G + +T ++ Y VF I P + W TMI+G+
Sbjct: 43 LKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFV 102
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRVF 115
+ + + Y + + V + +TF F+ K + R + G L K VF
Sbjct: 103 EAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVF 162
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+NALI Y CG + A +F
Sbjct: 163 TRNALIHMYLKCGSITDAHLLF 184
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 25/163 (15%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L + H ++L L + Q ++ G + +VF + P++ L N MIK Y+
Sbjct: 26 LLRAHGLAVRLCLSQSSYVATQIVHVC-NGHGRAAHAARVFAHVPAPNLHLHNAMIKAYA 84
Query: 64 RIDSHKNGVLMYLDLLK---------SDVRRDNYTFPFLFKG--------FTRDIAGSLE 106
+ H++ V +Y+ +L+ D +T+PFL K R + +
Sbjct: 85 QNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVA 144
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE 149
+S VQN+LI Y CG++ +AR +F DG+ E
Sbjct: 145 RSGCESHAIVQNSLIEMYTRCGDLSLARKVF-------DGMRE 180
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH++ +K G + +T+ L+ Y K D L+ +F ++ +VF W +I
Sbjct: 68 QQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKC 127
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + +L ++++L++ V DNY P + K F R + G + K+ + VF
Sbjct: 128 RIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVF 187
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 188 VASSLADMYGKCGVLDDARMVF 209
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 1 MHQLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M Q K IH+ I GL L K + L G L Y +F +I P++F +NT+I
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMRV- 114
+ YSR S L Y L+ D V D +TFPF+ T + L K V++
Sbjct: 77 RAYSR-SSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNG 135
Query: 115 ------FVQNALISTYCLCGEVDMARGIF 137
VQ AL+ Y C + AR +F
Sbjct: 136 VASSDRHVQTALVRFYAECCAMGDARKLF 164
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----GDLKYECKVFRKITQPSVFLWNTMIK 60
KQIH+ +K G+ + QT + Y + GD + K+F +I V WN ++
Sbjct: 125 KQIHNWVLKNGVASSDR-HVQTALVRFYAECCAMGDAR---KLFDEIPNLDVVQWNVLLN 180
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR------- 113
GY R + + ++L S V D + KG + G+L++ +
Sbjct: 181 GYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQ--LGALQQGKWIHEYVTKRKW 238
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
VF+ AL+ Y CG +D + +F
Sbjct: 239 LEADVFIGTALVDMYAKCGCIDRSVEVF 266
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----GDLKYECKVFRKITQPSVFLWN 56
+ LKQ+H+ K GL T P + LLL+ L Y ++F P VF+ N
Sbjct: 18 LKNLKQVHAYVCKTGLDTDPIIAGK---LLLHSAVSVPDALDYARRLFLHFPNPDVFMHN 74
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVM- 112
T+I+G + D+ +N ++ ++++ + D+++F FL K R + ++ C +
Sbjct: 75 TLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIV 134
Query: 113 -----RVFVQNALISTYCLCGEVDMARGIF 137
+FV L+S Y CG V A+ +F
Sbjct: 135 HGLDTHLFVGTTLVSMYSECGFVAFAKKVF 164
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L+ K+F ++ W+TMI G++ + +L + +R + +
Sbjct: 215 KAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTG 274
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + G +EKS + V V NAL+ TY CG V MAR +F
Sbjct: 275 ALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVF 327
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 66 QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 125
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++ + DN+ P + K F R + G + K+ + VF
Sbjct: 126 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 185
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 186 VASSLADMYGKCGVLDDARKVF 207
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 67 QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 126
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++ + DN+ P + K F R + G + K+ + VF
Sbjct: 127 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 186
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 187 VASSLADMYGKCGVLDDARKVF 208
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+++Q K GL P K +L L G L Y +F T + F+ NTMI+
Sbjct: 21 EVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTMDNPFVCNTMIRA 80
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------------DIA-GSLE 106
Y++ + +Y + + D++ D++ +PF K R DIA E
Sbjct: 81 YAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLDIACKGAE 140
Query: 107 KSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
C + R+ F+QN+L+ Y CG +D+AR +F
Sbjct: 141 IHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVF 177
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 26 TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85
RY+ L + D K VF+++ + WN+MI GY +I + + ++ ++ ++V
Sbjct: 224 ARYIRLGKIEDAK---AVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEA 280
Query: 86 DNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T + R I SL++ + ++ NAL+ Y CG +++A +F
Sbjct: 281 TDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVF 340
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY--EKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
KQ+H+ G P P +++ L LY G+L + F +I PS WN +I+G+
Sbjct: 21 KQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGF 80
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEK----SCIVMRVFVQN 118
+ + N Y ++ + D T F+ K R +A LE + IV + F+ +
Sbjct: 81 IQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLA-RLESIQIHTHIVRKGFIAD 139
Query: 119 ALIST-----YCLCGEVDMARGIF 137
AL+ T Y GE+D A +F
Sbjct: 140 ALLGTTLLDVYAKVGEIDSAEKVF 163
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 54 QQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 113
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++ + DN+ P + K F R + G + K+ + VF
Sbjct: 114 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVF 173
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 174 VASSLADMYGKCGVLDDARKVF 195
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+LKQ+H+ +K P + Y +F+ + V WNT ++ +
Sbjct: 30 ELKQLHAHLLKTNSPLSS-LPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
+ DS + + ++ L + D+ D+YT F+ K +R + G +EK + +
Sbjct: 89 AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F+QN ++ Y LCGE+ +AR +F
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVF 171
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 1 MHQLKQIHSQTIKLGLLT-KPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M QLKQI + GL + K + + GD Y ++F I PS+F++N MI
Sbjct: 21 MSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97
K + + S ++ + ++ L + V DNYT+P++ KG
Sbjct: 81 KAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGI 118
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++IH+ +K GL P+ + E G ++ +VF ++ + WN MI GY R
Sbjct: 128 EKIHAFVVKTGLEFDPYVCNSLMDMYA-ELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186
Query: 65 IDSHKNGVLMYLDL-LKSDVRRDNYTFPF------------LFKGFTRDIAGSLEKSCIV 111
+ V +Y + ++S+ + + T L K IA L+ + I+
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIM 246
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
NAL+ YC CG V +AR IF
Sbjct: 247 -----GNALLDMYCKCGCVSVAREIF 267
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT---- 98
+F + V LW MI GY + + ++ + ++ ++ V D + L G
Sbjct: 297 LFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGA 356
Query: 99 ----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I ++++ I M V ALI Y CG ++ + IF
Sbjct: 357 LEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIF 399
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 4 LKQIHSQTIKLGLLTKPHCPK---QTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
L+Q+H+ +K L P + ++ LLL + D Y +F I +P +N MI+
Sbjct: 37 LQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTID--YALSIFNHIDKPESSAYNVMIR 94
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
G + S N +L++ + + V+ D +TF + K +R + + KS
Sbjct: 95 GLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKS 154
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
FV+N LI Y CG++ +AR +F
Sbjct: 155 NEFVENTLIQMYANCGQIGVARHVF 179
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+Q+H+ +K G + + T + G + VF + + S+ WN+M+ GY++
Sbjct: 141 EQVHALILKSGFKSNEFV-ENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMRVFVQN--- 118
V ++ +L+ + D+ T + R G L IV + +N
Sbjct: 200 NGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259
Query: 119 --ALISTYCLCGEVDMARGIF 137
+LI Y CG+VD AR +F
Sbjct: 260 TTSLIDMYAKCGQVDTARKLF 280
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ----TRYLLLYEK-GDLKYECKVFRKITQPSVFLW 55
+ LK IH++ LL + + L LY + G Y KVF +ITQP+ +LW
Sbjct: 15 LKSLKSIHAR-----LLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLW 69
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEK 107
++I GY + +++ + + + N+T + K R + G + K
Sbjct: 70 TSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLK 129
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ VQN+++ + C +VD AR F CE D
Sbjct: 130 YGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKD 166
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTM 58
M++L++IHS I GL P R+ + G L Y +F + + PS WN +
Sbjct: 18 MNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWNYL 77
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTR--------DIAGSLEKSC 109
I+G+S S +L Y +L S V R D +TF F K R ++ GS+ +S
Sbjct: 78 IRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSG 137
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF-------------YMSCEDDDGLH 148
+ V L+ Y G V++A +F +SC GLH
Sbjct: 138 FLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLH 189
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++H I+ G L T + Y G ++ KVF ++ + WN MI +S
Sbjct: 128 ELHGSVIRSGFLADA--IVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSH 185
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR----------V 114
H MY + V D YT L +L ++ R V
Sbjct: 186 AGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAH--VSALNMGVMLHRIACDIRCESSV 243
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV NALI Y CG ++ A G+F
Sbjct: 244 FVCNALIDMYAKCGSLENAVGVF 266
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ VFR+I PSV++WN+MI+G+ + + +L+Y L+++ D++TFPF+
Sbjct: 41 GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100
Query: 95 K---GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
K G CIV F +A +T G + M Y+SC D
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEADAYTAT----GLLHM-----YVSCAD 143
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T L +Y K G K +F K+ Q ++ WN+MI Y++ + HK + ++ D+ S +
Sbjct: 240 TAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIY 299
Query: 85 RDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D TF + + + L K+ I + + AL+ Y G + A+ I
Sbjct: 300 PDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKI 359
Query: 137 F 137
F
Sbjct: 360 F 360
>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 630
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q H+Q + G TR + Y G+L VF + SV+LWN++I GY
Sbjct: 48 QQSHAQILANGFAQNAFLA--TRLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYV 105
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRVF 115
+ + + ++ ++ ++ + D+YT +FK F + I G + V V
Sbjct: 106 KNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVV 165
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+L+S YC CGE A +F
Sbjct: 166 VGNSLMSMYCRCGEFGDAVKVF 187
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L QIH I GL KPH Y L +++ DL K+ + P V LWN+MI+GY+
Sbjct: 21 LLQIHGSLIVAGL--KPHNQLINAYSL-FQRPDLSR--KIVDSVPYPGVVLWNSMIRGYT 75
Query: 64 RIDSHKNG--VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE------------KSC 109
R HK V Y+ K + D YTF F K AGS++ +
Sbjct: 76 RAGLHKEALEVFGYMSEAKG-IDPDKYTFTFALKA----CAGSMDFEEGLRIHDLIAEMG 130
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
V++ AL+ YC G++ AR +F
Sbjct: 131 FESDVYIGTALVEMYCKAGDLVSARQVF 158
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH T++ G+++ T + +Y K G+L+ ++F KI V W+ MI + +
Sbjct: 322 IHEYTVQQGMMSDISVA--TSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQA 379
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMRVFVQN----- 118
H + ++ D++++ + + T + +G A L KS C ++ V++
Sbjct: 380 GQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETA 439
Query: 119 -ALISTYCLCG 128
A+IS Y CG
Sbjct: 440 TAVISMYAKCG 450
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H Q IK+GL + + + +Y D ++ KVF Q + W TMI+GY
Sbjct: 145 EEVHGQAIKMGLASDVYV--SNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-----------EKSCIVM 112
++ + GV ++ ++ +++ D T + R G L S + +
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR--LGDLRLGRKLHRYIIRNSNVNL 260
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
VFV NAL+ Y CG+ + AR +F
Sbjct: 261 DVFVGNALVDMYLKCGDANFARKVF 285
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG---DLKYECKVFRKITQPSVFLWNTMIK 60
LKQIH+ IK TR L + D +Y + ++ P++ L+N +I+
Sbjct: 38 LKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIR 97
Query: 61 GYSRIDSHK-NGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G + ++ G+++Y +L + DNYT PF+ K ++ G K +
Sbjct: 98 GLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLA 157
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V+V N L+ Y +C + AR +F S + D
Sbjct: 158 SDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD 190
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD + KVF+++ +V WN+MI G ++ K + M+ + + V+ D+ T +
Sbjct: 276 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 335
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + L+++ I F+ NAL+ Y CG +D A +F
Sbjct: 336 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVF 386
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 23 PKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78
P + R LL +G + + VF +I +P F++NT+I+G + + ++ V +Y +
Sbjct: 10 PSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM 69
Query: 79 L----KSDVRRDNYTFPFLFKGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCL 126
L VR D TFPF+ + T AG + K+ FV+NALI +
Sbjct: 70 LRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHAS 129
Query: 127 CGEVDMARGIF 137
CG + +A +F
Sbjct: 130 CGNLGIAAALF 140
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++GD+ ++F ++ + V WN MI GY R SH + + ++ + + + D T
Sbjct: 191 KRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 250
Query: 93 LFKGFTR----DIAGSLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142
L D+ L S M V + NALI Y CG + A +F+ S
Sbjct: 251 LLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFW-SMR 309
Query: 143 DDD 145
D D
Sbjct: 310 DKD 312
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
LKQ+H+ IK G + P + + D+ Y VFR++ +P+ F WNT+++ +
Sbjct: 35 LKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLA 94
Query: 64 RI-DSH-KNGVLMYLDLLKSD--VRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
D H ++ LM + D V+ + +TFP + K R I G + K
Sbjct: 95 ETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFH 154
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
FV + L+ Y +C ++ A +F + D DG
Sbjct: 155 EDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDG 189
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+K +F ++ Q SV WN MI GY++ + ++ ++ S++ + T +
Sbjct: 218 GDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R G+LE K+ I + + +AL+ Y CG +D A +F
Sbjct: 278 PAIAR--IGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVF 328
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 23 PKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78
P + R LL +G + + VF +I +P F++NT+I+G + + ++ V +Y +
Sbjct: 10 PSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM 69
Query: 79 L----KSDVRRDNYTFPFLFKGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCL 126
L VR D TFPF+ + T AG + K+ FV+NALI +
Sbjct: 70 LRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHAS 129
Query: 127 CGEVDMARGIF 137
CG + +A +F
Sbjct: 130 CGNLGIAAALF 140
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
++GD+ ++F ++ + V WN MI GY R SH + + ++ + + + D T
Sbjct: 191 KRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 250
Query: 93 LFKGFTR----DIAGSLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142
L D+ L S M V + NALI Y CG + A +F+ S
Sbjct: 251 LLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFW-SMR 309
Query: 143 DDD 145
D D
Sbjct: 310 DKD 312
>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
Length = 1154
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTM 58
+ LK +H+ +K L PH C T + Y G + + +F +VFLWN +
Sbjct: 480 LEALKSLHASILKSHL--HPHLC---TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHI 534
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA-GSLEKSCIVM--- 112
I+ +S +N + +Y +L+ ++ N+TFPFL K G D G+ + +V+
Sbjct: 535 IRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGY 594
Query: 113 --RVFVQNALISTYCLCGEVDMARGIF 137
VFV N+L++ Y G D +R +F
Sbjct: 595 ESDVFVANSLMAMYGRFGCFDFSRQVF 621
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 19 KPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77
K H T + LY K G+L+Y K F +++ ++ W+TMI GY + H L D
Sbjct: 794 KNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYG-MHGHGREALCLFD 852
Query: 78 LLKSDVRRDNYTFPFLFKGFTRDI 101
+K+ ++ D+ F + + ++
Sbjct: 853 QMKASIKPDHIAFVMVLSACSHEL 876
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + +VF ++ + +V W++M+ Y+ ++ G+L++ +L + + +
Sbjct: 612 GCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM 671
Query: 95 KGFTR-----DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
R D + + + VQNA + Y CG +D+AR FY + D
Sbjct: 672 ACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKD 726
>gi|125526790|gb|EAY74904.1| hypothetical protein OsI_02796 [Oryza sativa Indica Group]
Length = 616
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K G H T+ + Y + G L + F + + F W +I +S
Sbjct: 95 RQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSALPAKNAFAWAAVIGMWS 154
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R H + Y +L++ V DN+ P + K R + G K + V+
Sbjct: 155 RAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLGLLAPGRAVHGYAWKPGLGNCVY 214
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y CGEVD AR +F
Sbjct: 215 VMSSLVDFYGKCGEVDDAREVF 236
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+LKQ+H+ +K P + Y +F+ + V WNT ++ +
Sbjct: 30 ELKQLHAHLLKTNSPLSS-LPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
+ DS + + ++ L + D+ D+YT F+ K +R + G +EK + +
Sbjct: 89 AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F+QN ++ Y LCGE+ +AR +F
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVF 171
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 2 HQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ +K++H+Q IK L + PK L + +L VF +I P+V L+NT+I+
Sbjct: 37 NHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLA--VNVFNQIQDPNVHLYNTLIR 94
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
+ + + D+ K+ + DN+T+PFL K + I +EK
Sbjct: 95 AHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFG 154
Query: 113 RVFVQNALISTYCLCG--EVDMARGIFYMSCEDD 144
+FV N+LI +Y CG V+ A +F E D
Sbjct: 155 DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKD 188
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD++ +F K+ ++ W +I G++ K +Y + + ++ D+ T
Sbjct: 263 KTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLIS 322
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + S++K I V V NAL+ Y CG VD A IF
Sbjct: 323 ILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIF 375
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y KVF + LWN+M+ GY++ S + + ++ +L++ VR TF L
Sbjct: 538 MDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPA 597
Query: 97 FTR----DIAGSLEKSCIVMR----VFVQNALISTYCLCGEVDMARGIF 137
F + L I R +F+ ++LI YC CG VD+AR +F
Sbjct: 598 FGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVF 646
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M Q+KQ H+Q I L++ P + L L L Y K+F +I QP +F++NTMIK
Sbjct: 29 MQQIKQTHAQLITTALISHP--VSANKLLKLAACASLSYAHKLFDQIPQPDLFIYNTMIK 86
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRR--DNYTFPFLFKGFTRDIAGSLE---------KSC 109
+S + L+ L D+ + Y+F F F + G E K
Sbjct: 87 AHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGL-GVQEGEQVRIHAVKVG 145
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ VFV NALI Y G V ++ +F + + D
Sbjct: 146 LENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRD 180
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ LK +H+ +K L PH T + Y G + + +F +VFLWN +I
Sbjct: 17 LEALKSLHASILKSHL--HPHLC--TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHII 72
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA-GSLEKSCIVM---- 112
+ +S +N + +Y +L+ ++ N+TFPFL K G D G+ + +V+
Sbjct: 73 RAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYE 132
Query: 113 -RVFVQNALISTYCLCGEVDMARGIF 137
VFV N+L++ Y G D +R +F
Sbjct: 133 SDVFVANSLMAMYGRFGCFDFSRQVF 158
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + +VF ++ + +V W++M+ Y+ ++ G+L++ +L + + +
Sbjct: 149 GCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM 208
Query: 95 KGFTR-----DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
R D + + + VQNA + Y CG +D+AR FY + D
Sbjct: 209 ACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKD 263
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 19 KPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77
K H T + LY K G+L+Y K F +++ ++ W+TMI GY + H L D
Sbjct: 331 KNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYG-MHGHGREALCLFD 389
Query: 78 LLKSDVRRDNYTF 90
+K+ ++ D+ F
Sbjct: 390 QMKASIKPDHIAF 402
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + Y ++F P++F+WNT+I+GYS DS + +Y D+ + ++YTF F+
Sbjct: 55 GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVL 114
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + ++ + K + + N LI Y CG +D A +F
Sbjct: 115 KACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMF 165
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HSQ +K+GL + P + LY G + Y C +F ++ +P W+TM+ GY+
Sbjct: 127 QELHSQIVKVGLDFET--PLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYA 184
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG---------SLEKSCIVMRV 114
+ + ++ ++ +V D +T + G D+ ++K + + V
Sbjct: 185 QNGQAVEALKLFREMQAENVSSDAFTLASVV-GVCGDLGALDLGKWVHSYMDKEGVKIDV 243
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ AL+ Y CG +D A +F E D
Sbjct: 244 VLGTALVGMYSKCGSLDNALKVFQGMAERD 273
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
LKQ+H+ IK G + P + + D+ Y VFR++ +P+ F WNT+++ +
Sbjct: 35 LKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILA 94
Query: 64 RI-DSH-KNGVLMYLDLLKSD--VRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
D H ++ LM + D V+ + +TFP + K R I G + K
Sbjct: 95 ETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFH 154
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
FV + L+ Y +C ++ A +F + D DG
Sbjct: 155 EDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDG 189
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+K +F ++ SV WN MI GY++ + ++ ++ S++ + T +
Sbjct: 218 GDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R G+LE K+ + + + +AL+ Y CG +D A +F
Sbjct: 278 PAIAR--IGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVF 328
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
++Q+KQ+H+Q +K L PK L + + F ++ P+V L+NTMI
Sbjct: 59 LNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQ--MLLATNAFNQVQYPNVHLYNTMI 116
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+ +S + + + DN+TFPFL K T ++ +EK +
Sbjct: 117 RAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFM 176
Query: 112 MRVFVQNALISTYCLCGE--VDMARGIF 137
VFV N+LI +Y CG + A+ +F
Sbjct: 177 SDVFVPNSLIDSYSKCGSCGISAAKKLF 204
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-----------TQ 49
+H + QIHS+ I G + P TR +L + K + R + Q
Sbjct: 27 LHDVNQIHSRLITTGFINNP--SLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQ 84
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI 101
+ FLWN +IK +S + + +++ +L++ V D ++F + K +R I
Sbjct: 85 DNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQI 144
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G L + I VF+QN L+ Y CG + +AR +F
Sbjct: 145 HGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLF 180
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
+Q HS+ + LGL + T+ + Y Y + VF + +VFLWN++I GY+
Sbjct: 43 RQSHSRILSLGL--SQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYA 100
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ + SDV D++T L K + + I G + V
Sbjct: 101 KNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTV 160
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDD--DLHELFPEYLVQM 171
V N+++S YC CG + +R +F M+ + + LI AV + E E++ QM
Sbjct: 161 VANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQM 219
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-----------YTF 90
+VF ++ +VF W MI GY + ++ D+ D N +F
Sbjct: 289 RVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSF 348
Query: 91 PFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
L G R I G + + V + NALI Y CG +D AR +F EDD
Sbjct: 349 SGLLSG--RQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF----EDD 396
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
++Q+KQ+H+Q +K L PK L + + F ++ P+V L+NTMI
Sbjct: 33 LNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQ--MLLATNAFNQVQYPNVHLYNTMI 90
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIV 111
+ +S + + + DN+TFPFL K T ++ +EK +
Sbjct: 91 RAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFM 150
Query: 112 MRVFVQNALISTYCLCGE--VDMARGIF 137
VFV N+LI +Y CG + A+ +F
Sbjct: 151 SDVFVPNSLIDSYSKCGSCGISAAKKLF 178
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 70 KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKC 129
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++++ DN+ P + K F R + G + K+ + VF
Sbjct: 130 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVF 189
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 190 VASSLADMYGKCGVLDDARKVF 211
>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD--LKYECKVFRKITQPSVFLWNTMIKGYS 63
Q H IKLGL + P + +Y K + + K+F I++P++ W MI G+
Sbjct: 283 QFHGSAIKLGLAHET--PIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFM 340
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRVF 115
+ + ++ + ++ ++L+ VR ++++F + + + I + KS + +
Sbjct: 341 QNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLS 400
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NALI Y CG ++ A +F
Sbjct: 401 VNNALIDMYSKCGSLEDAHLVF 422
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-- 99
K F +I + + WN MI G +R +S ++ V M+ +LK +VR D +T + K ++
Sbjct: 217 KAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPG 276
Query: 100 ------DIAGSLEKSCIVMRVFVQNALISTYCLC 127
GS K + + NALI+ Y C
Sbjct: 277 DLKHGMQFHGSAIKLGLAHETPIYNALITMYSKC 310
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
+ KQ+H+ ++K + P + L LY + +L+Y +F KI +P++ L+N +I
Sbjct: 23 ETKQLHALSVKTNTFSHPSI--SSCLLSLYAEPKINNLEYVLSIFNKIQEPALVLYNILI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
K Y + + + ++ LL + D +T P + KG R I G + K
Sbjct: 81 KCYIQNQLSHDAITLFSQLLH-EFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFG 139
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
+ FV ++L++ Y C ++D A+ +F +S +D D
Sbjct: 140 LNKFVSSSLVNMYSKCKDIDSAKKVF-LSMDDKD 172
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD ++F K+ + ++ WN+M+ GY + K + ++L +L+ D ++ T
Sbjct: 247 KAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVS 306
Query: 93 LF---KGFTRDIAGSLEKSCIVMRVF-----VQNALISTYCLCGEVDMARGIF 137
F G G S +V F + +LI+ Y CG ++ A +F
Sbjct: 307 TFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVF 359
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH +KLG + + +Y K D+ KVF + + WN++I GY
Sbjct: 127 KQIHGLVLKLGFGLNKFV--SSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYV 184
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRVFVQNA 119
+ + G+ ++ ++ RD +++ L GF++ D+A L + NA
Sbjct: 185 KCGQVELGMKLFEEM----PERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNA 240
Query: 120 LISTYCLCGEVDMARGIF 137
+I+ Y G+ +A +F
Sbjct: 241 MINGYMKAGDFVLASELF 258
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WN 56
+ Q KQ+H+Q I LGL P +R + Y +L + + +T+ S L WN
Sbjct: 97 LSQGKQLHAQVISLGLDQNP--ILVSRLVNFYTNVNLLVDAQF---VTESSNTLDPLHWN 151
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKS 108
+I Y R + +Y ++L + D YT+P + K ++ S+E S
Sbjct: 152 LLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEAS 211
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV NAL+S Y G++++AR +F
Sbjct: 212 SMEWSLFVHNALVSMYGRFGKLEIARHLF 240
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL + +F + + + WN M+ GY+ +D ++ ++ ++L+ + + T +
Sbjct: 367 DLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLP 426
Query: 96 GFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
R ++ E C +M+ + + NAL+ Y G V AR +F
Sbjct: 427 LCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVF 477
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH++ ++ G P+ Q+ + LY K + ++ +VF +IT+ ++ W+ MI GY+
Sbjct: 252 RQIHARILRSGFSLNPYV--QSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYA 309
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R+ + M+ ++ + + D + + R I ++K I + +
Sbjct: 310 RVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLE 369
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI---RIKAVDDDLHELF 164
+ AL++ Y CG ++ A+ IF YM +D +I I + +D E+F
Sbjct: 370 LNTALVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMIVGLAIHGLAEDALEMF 422
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCP----KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
+H L+QIH++ I LL P K + L GDL Y K+F +I P +F +N
Sbjct: 141 LHFLRQIHAR-ILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFAQIPNPGIFPYN 199
Query: 57 TMIKG--YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLE 106
T+I+G Y++ S + L + + R + +T F+ K R I +
Sbjct: 200 TIIRGCSYAKNPSREPYFLYKSMVTRGFPRANTFTMAFVLKACASIMAFEEGRQIHARIL 259
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+S + +VQ++L+S Y C E+ +A+ +F
Sbjct: 260 RSGFSLNPYVQSSLVSLYGKCEEIRLAKQVF 290
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 90 KQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 149
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++++ DN+ P + K F R + G + K+ + VF
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 210 VASSLADMYGKCGVLDDARKVF 231
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH ++ G+ + H + +Y + G L VF V WN+MI G++
Sbjct: 451 KMIHEDILRSGIKSNGHLANA--LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ S++ ++ ++ ++ DN TF + G + I G + +S + + V
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568
Query: 116 VQNALISTYCLCGEVDMARGIFY 138
+ NALI+ Y CG + AR +F+
Sbjct: 569 LGNALINMYIRCGSLQDARNVFH 591
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IHSQ IK G P Q L +Y K GDL +VF I+ V +NTM+ Y+
Sbjct: 148 KKIHSQIIKAGYQRDPRV--QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ K + ++ + + D T+ L FT + I + + +
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V AL++ CG+VD A+ F
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAF 287
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++F + + + WN +I GY+R + + +Y + V+ TF L
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438
Query: 95 KGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
A + + +S I + NAL++ Y CG + A+ +F
Sbjct: 439 SACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIH IK G+ T + K + + L Y ++ +P F++NT++
Sbjct: 10 LRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 69
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR--- 113
+GYS D N V ++++++ K V D+++F F+ K R + + C ++
Sbjct: 70 RGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGL 129
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV LI Y CG V+ AR +F
Sbjct: 130 ESHLFVGTTLIGMYGGCGCVEFARKVF 156
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 16 LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
+L + H + G+L+ ++F ++ W+TMI G + S L +
Sbjct: 190 MLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYF 249
Query: 76 LDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+L ++ + + + + F + + G +EK+ V V NALI Y C
Sbjct: 250 RELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC 309
Query: 128 GEVDMARGIF 137
G V MAR +F
Sbjct: 310 GNVPMARLVF 319
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIH IK G+ T + K + + L Y ++ +P F++NT++
Sbjct: 18 LRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 77
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR--- 113
+GYS D N V ++++++ K V D+++F F+ K R + + C ++
Sbjct: 78 RGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGL 137
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV LI Y CG V+ AR +F
Sbjct: 138 ESHLFVGTTLIGMYGGCGCVEFARKVF 164
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 16 LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
+L + H + G+L+ ++F ++ W+TMI G + S L +
Sbjct: 198 MLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYF 257
Query: 76 LDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+L ++ + + + + F + + G +EK+ V V NALI Y C
Sbjct: 258 RELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC 317
Query: 128 GEVDMARGIF 137
G V MAR +F
Sbjct: 318 GNVPMARLVF 327
>gi|296089169|emb|CBI38872.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-----------TQ 49
+H + QIHS+ I G + P TR +L + K + R + Q
Sbjct: 27 LHDVNQIHSRLITTGFINNPSL--TTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQ 84
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI 101
+ FLWN +IK +S + + +++ +L++ V D ++F + K +R I
Sbjct: 85 DNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQI 144
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G L + I VF+QN L+ Y CG + +AR +F
Sbjct: 145 HGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLF 180
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRD 100
+F K+++ S+F WN M+ GY + MY ++ V D+YTFP L K G D
Sbjct: 14 IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73
Query: 101 IAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ E + ++ VFV N+L++ Y C +++ AR +F
Sbjct: 74 LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLF 116
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVF-RKITQPSVFLWNTMIKGYS 63
+IH IK G + LY K D+ K+F R + V WN++I YS
Sbjct: 79 EIHGLAIKYG--CDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFL--------FKGFTRDIAGSLEKSCIVMRVF 115
+ ++ ++LK+ V + YTF F I ++ KS V+ V+
Sbjct: 137 GNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY 196
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL++ Y G++ A IF
Sbjct: 197 VANALVAMYVRFGKMPEAAVIF 218
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMI 59
+ ++K+IH TI+ GL + P Q + +Y E G + Y ++F I V W +MI
Sbjct: 378 LGKIKEIHGYTIRGGL-SDP--VLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMI 434
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
Y + ++ + ++ + D T + ++I G + + +
Sbjct: 435 SCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFI 494
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ + N L+ Y CG V+ A IF
Sbjct: 495 LEGSISNTLVDMYARCGSVEDAYKIF 520
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH +K +P Q L +Y K G LK K F + SV W MI GYS
Sbjct: 100 KRIHDHILKSN--CQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYS 157
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----RDIAGSLE----KSCIVMRVF 115
+ + ++MY+ +L+S D TF + K D+ G L KS +
Sbjct: 158 QNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLI 217
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
QNALIS Y G++ A +F M D
Sbjct: 218 AQNALISMYTKFGQIAHASDVFTMISTKD 246
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFL-WNTM 58
++Q QIHS IK+GL L +Y K +L VF+ I++ + WN +
Sbjct: 399 LNQGMQIHSYIIKMGL--DKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAI 456
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KS 108
+ S+ ++ +L S+ + DN T + G ++ SLE KS
Sbjct: 457 LSACSQHKQPGEAFRLFKLMLFSENKPDNITITTIL-GTCAELV-SLEVGNQVHCFSVKS 514
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+V+ V V N LI Y CG + AR +F
Sbjct: 515 GLVVDVSVSNRLIDMYAKCGLLKHARYVF 543
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 45 RKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT------ 98
IT PS+ LWN++I+ YSR+ + + Y + + D YTF F+ K T
Sbjct: 85 NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFH 144
Query: 99 ------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+DIA S E C VF+ L+ YC G +D AR +F
Sbjct: 145 EGVAIHQDIA-SRELEC---DVFIGTGLVDMYCKMGHLDNARKVF 185
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 39 YECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--G 96
Y +F ++ V WNT+I G+++ + + M+L L S V+ D+ T L
Sbjct: 482 YAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACA 541
Query: 97 FTRDI------AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS 140
D+ G++ K+ I + V+ ALI Y CG + A +F+++
Sbjct: 542 LLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLN 591
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFL 93
G L KVF K+ V WN MI G S+ + + ++ + ++ V D+ + L
Sbjct: 176 GHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNL 235
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDD 144
+R I G + + C+ V N+LI Y CGEV +A IF M +DD
Sbjct: 236 APAVSRLEDVDSCKSIHGYVVRRCVFG--VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDD 293
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLY------EKGDLKYECKVFRKITQPSVFLWNT 57
L Q+H+ I+ GL +Q +L+ + Y VF ++ PS FLWN+
Sbjct: 45 LHQVHAHLIQKGL-------EQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNS 97
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSC 109
++ GY + + +Y+ + + D D YTFP L K + + GS+ +
Sbjct: 98 LVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCG 157
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE 149
+ ++V +L++ Y G +D AR +F DG+ E
Sbjct: 158 VDEDIYVTTSLVNLYGKGGLIDCARKVF-------DGMSE 190
>gi|297734518|emb|CBI15765.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G+ + +VFRK+ + V WN+MI G R + + + + ++L S+V D +TF
Sbjct: 125 LMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTF 184
Query: 91 PFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+ G R + G + + I + + +ALI Y CG ++ A+ +F
Sbjct: 185 ASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQH 244
Query: 143 DD 144
DD
Sbjct: 245 DD 246
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH +K +P Q L +Y K G LK K F + +V W MI GYS
Sbjct: 177 KKIHDHILKSN--CQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYS 234
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + ++MY+ +L+S D TF + K R + G + KS +
Sbjct: 235 QNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLI 294
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
QNALIS Y G++ A +F M D
Sbjct: 295 AQNALISMYTRFGQIVHASDVFTMISTKD 323
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFL-WNTM 58
++Q QIHS IK+GL L +Y K +L VF+ +++ + + WN +
Sbjct: 477 INQGTQIHSYIIKIGL--DKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAI 534
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KS 108
+ + ++ +L S+ + DN T + G ++A SLE KS
Sbjct: 535 LSACLQHKQAGEVFRLFKLMLFSENKPDNITITTIL-GTCAELA-SLEVGNQVHCFSVKS 592
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+V+ V V N LI Y CG + AR +F
Sbjct: 593 GLVVDVSVSNRLIDMYAKCGSLKHARDVF 621
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L + KVF ++ + +V W TMI GY + ++ + ++++++K R N
Sbjct: 205 QNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFV 264
Query: 93 LFKGFTRDIAGSLE---------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G D+AG E KS R FV +AL++ Y CGE+ +AR IF
Sbjct: 265 NVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIF 318
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 18/148 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M Q+KQIH T++ G+ QT+ L+ L E +L Y KV +P++FL+N +
Sbjct: 1 MRQVKQIHGYTLRNGI-------DQTKILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKL 53
Query: 59 IKGYSRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE--------KSC 109
I+ YS H++ +Y +L + +TF FLF T + SL KS
Sbjct: 54 IQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSG 113
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+F AL+ Y G +++AR +F
Sbjct: 114 FEPDLFAATALLDMYTKVGTLELARKLF 141
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFL 93
GD+ ++FR + +V W TMI GYSR + + ++L + + N T +
Sbjct: 163 GDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASI 222
Query: 94 FKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F F G+LE K+ ++V NA++ Y CG++D+A +F
Sbjct: 223 FPAFAN--LGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVF 274
>gi|3287676|gb|AAC25504.1| Contains similarity to membrane associated salt-inducible protein
homolog IG002N01.30 gb|2191151 from A. thaliana BAC
gb|AF007269. EST gb|F14461 comes from this gene. Gene
continues on the 3' end of BAC F19G10 gb|AF000657 gene
F19G10.21 [Arabidopsis thaliana]
Length = 435
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WNTMI 59
+Q+H+ I GL PK + Y +L E + IT+ S L WN +I
Sbjct: 103 QQLHAHCISSGLEFDSVLVPKLVTF---YSAFNLLDEAQT---ITENSEILHPLPWNVLI 156
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y R + V +Y ++ +R D +T+P + K + R + GS+E S
Sbjct: 157 GSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHR 216
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELF 164
++V NALIS Y G+VD+AR +F MS D + +I ++ L E F
Sbjct: 217 CNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAF 270
>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 42 KVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--- 96
+VF +++ + S F WN++I GY+ + +++ + +Y + + V+ D +TFP + K
Sbjct: 379 EVFDRMSKRESSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGG 438
Query: 97 -----FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
I L K+ V V NAL+ Y CG++ AR +F M D
Sbjct: 439 IGSVQIGEAIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKD 491
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTM 58
M +L++IHS I GL P R+ + G L + +F + PS WN +
Sbjct: 18 MKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYL 77
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTR--------DIAGSLEKSC 109
I+G+S S N +L Y +L S V R D +TF F K R +I GS+ +S
Sbjct: 78 IRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSG 137
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V +L+ Y G V++A +F
Sbjct: 138 FLDDAIVATSLVRCYSANGSVEIASKVF 165
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IH I+ G L T + Y G ++ KVF ++ + WN MI +S
Sbjct: 128 EIHGSVIRSGFLDDA--IVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSH 185
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR----------V 114
+ H + MY + V D+YT L +L ++ R V
Sbjct: 186 VGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAH--VSALNMGVMLHRIACDIRCESCV 243
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV NALI Y CG ++ A G+F
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVF 266
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL VF K+ + +F WN ++ GY++ + +Y +L +R D YTFP +
Sbjct: 143 GDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVL 202
Query: 95 K--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ G D+A E V+R V V NALI+ Y CG++ AR +F
Sbjct: 203 RTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQIH+ +K G L +Y K G+++ +VF +I P W TMI
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGV--LDMYLKCGEMESARRVFSEIPSPDDVAWTTMI 1211
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G ++ + Y + S V+ D YTF L K + R I ++ K
Sbjct: 1212 SGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCA 1271
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+ Y CG ++ ARG+F
Sbjct: 1272 FDPFVMTSLVDMYAKCGNIEDARGLF 1297
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 5 KQIHSQTIKLGL---LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIK 60
KQIH ++ GL ++ +C + +Y K G + VF ++ + + WNTMI
Sbjct: 955 KQIHGIVMRSGLDQVVSVGNC-----LINMYVKAGSVSRARSVFGQMNEVDLISWNTMIS 1009
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---------FTRDIAGSLEKSCIV 111
G + + V M++ LL+ + D +T + + I K+ +V
Sbjct: 1010 GCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVV 1069
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV ALI Y G+++ A +F
Sbjct: 1070 LDSFVSTALIDVYSKRGKMEEAEFLF 1095
>gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g25270, chloroplastic; Flags: Precursor
gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana]
gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana]
gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 42 KVFRKITQ--PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--- 96
+VF ++++ S F WN++I GY+ + +++ + +Y + + V+ D +TFP + K
Sbjct: 148 EVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGG 207
Query: 97 -----FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
I L K V+V NAL+ Y CG++ AR +F M
Sbjct: 208 IGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDM 255
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD----LKYECKVFRKITQPSVFLWN 56
+ LKQIH+ +K L P+ + D Y C +F+ + Q ++F++N
Sbjct: 20 VQHLKQIHAHLLKTYLSQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMYN 79
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT------RDIAGSLEKSCI 110
+MI+GY K +L YLDL+ + YTFP L K + I + I
Sbjct: 80 SMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVI 139
Query: 111 VMR----VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V+ FV +AL+ Y L ++ +AR +F S D
Sbjct: 140 VLGYENDAFVVSALVEFYSLF-DLKVARVLFDKSSGKD 176
>gi|356540526|ref|XP_003538739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g47460-like [Glycine max]
Length = 585
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 14/189 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS I+ G + H T + LY + K+F +I +PSV WNT+I GY
Sbjct: 86 QQLHSYVIRSGYFSHIHV--STSLIKLYVRTHSFSDAHKLFVEIAEPSVVTWNTLISGYV 143
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMRV------F 115
+N + + L +S V D +F + L S C +++V
Sbjct: 144 HTGQFRNALSFFTLLDRSHVCADAVSFTSALSACSLLSLFKLGSSIHCKIVKVGMADGTV 203
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDD-GLHELIRIKAVDDDLHELFPEYLVQMLAL 174
V N LI Y CG ++ A IF + E D + +I A + D+ EL ++L ++
Sbjct: 204 VANCLIVMYGKCGSLERAVRIFSQTIEKDVISWNSVIAASANNGDI-ELAYKFL-HLMPN 261
Query: 175 PDTFMGEGL 183
PDT GL
Sbjct: 262 PDTVSYNGL 270
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQ------------PSV 52
+QIH++ IK G + + TR +L + Y + R + Q
Sbjct: 7 EQIHARLIKTGFIQNSNLT--TRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDP 64
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGS 104
FLWN +IK +S K ++ + +L++ V D ++ + K +R I G
Sbjct: 65 FLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGF 124
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI------RIKAVD 157
L K+ I +F+QN LI Y CG + AR IF M D + +I +
Sbjct: 125 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSA 184
Query: 158 DDLHELFPEYLVQMLALPDTFMG-----EGLEVIPK--SQAPREETPRVGNLEEGTPQEG 210
+L +L P+ + +++ G +G+ + K ++ P ++ +L +G + G
Sbjct: 185 RELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHG 244
Query: 211 R 211
R
Sbjct: 245 R 245
>gi|118488703|gb|ABK96162.1| unknown [Populus trichocarpa]
Length = 553
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ + KQ+H+ K LL P + K R+ L DL +F K Q SVFLWN++I
Sbjct: 19 LSRTKQLHALVTKTHLLQDPFYATKLVRFYAL--NNDLSSARNLFDKTPQRSVFLWNSII 76
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIV 111
+ Y++ + L+Y ++ DV D YT+ L + D + G + S +
Sbjct: 77 RAYAQAHKFDDAFLLYTKMIGFDVIPDKYTYACLIRACCEDFYVDGLRIVHGGVIVSGLG 136
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +AL++ Y G V A +F
Sbjct: 137 LDSVTCSALVTGYSKMGLVGEASKVF 162
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 4 LKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKG 61
L+ +H I GL L C + + Y K L E KVF + +P + LWN MI G
Sbjct: 123 LRIVHGGVIVSGLGLDSVTC---SALVTGYSKMGLVGEASKVFCGVFEPDLVLWNAMISG 179
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
G+L + ++ + +R D YTF L G + I G KS
Sbjct: 180 CGYCGFGDKGLLFFNEMRDNGNKRPDGYTFVALISGLANSSSLELGQGIHGLCLKSGFDC 239
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V ++L+S Y +++A +F C+ D
Sbjct: 240 NDHVGSSLVSMYSRFSCINLAYSVFRSLCQPD 271
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY--------TFPFL 93
VFR + QP + W+ +I G+S+ H+ +L Y +L + + D+ T
Sbjct: 262 SVFRSLCQPDLVTWSALITGFSQAGEHEKALLFYKNLNLAGKKPDSVLIASVLVATAQLA 321
Query: 94 FKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G I G + + V V +ALI Y CG V + +F
Sbjct: 322 NVGPGAQIHGYIVRYGFESHVMVSSALIDMYSKCGFVGLGLRVF 365
>gi|15220977|ref|NP_173696.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|145323986|ref|NP_001077582.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75316139|sp|Q4V389.1|PPR55_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g22830
gi|66792712|gb|AAY56458.1| At1g22830 [Arabidopsis thaliana]
gi|332192171|gb|AEE30292.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332192172|gb|AEE30293.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 703
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WNTMI 59
+Q+H+ I GL PK + Y +L E + IT+ S L WN +I
Sbjct: 103 QQLHAHCISSGLEFDSVLVPKLVTF---YSAFNLLDEAQT---ITENSEILHPLPWNVLI 156
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y R + V +Y ++ +R D +T+P + K + R + GS+E S
Sbjct: 157 GSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHR 216
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELF 164
++V NALIS Y G+VD+AR +F MS D + +I ++ L E F
Sbjct: 217 CNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAF 270
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL++ VF+++ S+ WN++I G++ + + + ++L S ++ T +
Sbjct: 372 DLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILP 431
Query: 96 GFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
F R ++ E C ++R + + N+L+ Y GE+ A+ +F
Sbjct: 432 LFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVF 482
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 17/152 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-----GDLKYECKVFRKITQPSVFLW 55
+ L Q+H+ +K GL P TR L L K L Y +VF +I P +W
Sbjct: 32 LRALAQLHAAAVKSGLGAHPAL--VTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVW 89
Query: 56 -NTMIKGYSR-IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSL 105
NT+++GY+R D + +L+ V D YTF L K R G
Sbjct: 90 YNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVA 149
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K+ +V LI+ Y CG+ AR +F
Sbjct: 150 VKTGAADHEYVLPTLINMYAECGDARSARAMF 181
>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420
gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana]
gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 794
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++SQ IKLG + QT L +Y GDL+ ++F + WNTMI G
Sbjct: 219 SSLNSQIIKLGY--SDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSL 276
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ------ 117
+ D ++G++ + ++L S V +T+ + G ++ + SL K I R+ V
Sbjct: 277 KNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGK-LIHARIIVSDSLADL 335
Query: 118 ---NALISTYCLCGEVDMARGIF 137
NAL+ YC CG++ A +F
Sbjct: 336 PLDNALLDMYCSCGDMREAFYVF 358
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
GD++ VF +I P++ WN++I G S + +LMY LL+ S R D YTF
Sbjct: 349 GDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAA 408
Query: 94 FKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + G + K VFV L+S Y E + A+ +F + E D
Sbjct: 409 ISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERD 467
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H Q KLG + T + ++ + + KVF + + V LW MI G+SR
Sbjct: 422 KLLHGQVTKLGY-ERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSR 480
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---CIVMR------VF 115
+ + + V ++++ + R D ++ + G D+A + C+ +R +
Sbjct: 481 LGNSELAVQFFIEMYREKNRSDGFSLSSVI-GACSDMAMLRQGEVFHCLAIRTGFDCVMS 539
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V AL+ Y G+ + A IF ++ D
Sbjct: 540 VCGALVDMYGKNGKYETAETIFSLASNPD 568
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH ++ G+ + H + +Y + G L VF V WN+MI G++
Sbjct: 451 KMIHEDILRSGIKSNGHLANA--LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ S++ ++ ++ ++ DN TF + G + I G + +S + + V
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568
Query: 116 VQNALISTYCLCGEVDMARGIFY 138
+ NALI+ Y CG + AR +F+
Sbjct: 569 LGNALINMYIRCGSLQDARNVFH 591
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IHSQ IK G P Q L +Y K GDL +VF I+ V +NTM+ Y+
Sbjct: 148 KKIHSQIIKAGYQRDPRV--QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ K + ++ + + D T+ L FT + I + + +
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLH--ELFPEY 167
V AL++ CG+VD A+ F + + D ++ + I A+ H E F +Y
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNAL-IAALAQHGHNVEAFEQY 318
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++F + + + WN +I GY+R + + +Y + V+ TF L
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438
Query: 95 KGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
A + + +S I + NAL++ Y CG + A+ +F
Sbjct: 439 SACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y VF+ I +P+ WNTMI+G++ + + +Y+ ++ + ++YTFPFLFK
Sbjct: 28 LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87
Query: 97 FTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ I + K + + + V +LIS Y G V+ A +F S D
Sbjct: 88 CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRD 143
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-------------------------------- 32
KQIH+Q +K GL H T + +Y
Sbjct: 98 KQIHAQILKYGLTVDLHV--HTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYA 155
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G++ K+F +I V WN MI GY+ I +K + ++ +++K DV+ D T
Sbjct: 156 SRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMAT 215
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T R I ++ + + NALI Y CGE++ A G+F
Sbjct: 216 VLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLF 268
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ +F + V WNT+I GY+ I+ HK +L++ ++LK ++ T
Sbjct: 254 LYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVT 313
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K I+ +Q +LI Y CG ++ A +F
Sbjct: 314 MLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVF 371
>gi|51970930|dbj|BAD44157.1| hypothetical protein [Arabidopsis thaliana]
Length = 703
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WNTMI 59
+Q+H+ I GL PK + Y +L E + IT+ S L WN +I
Sbjct: 103 QQLHAHCISSGLEFDSVLVPKLVTF---YSAFNLLDEAQT---ITENSEILHPLPWNVLI 156
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y R + V +Y ++ +R D +T+P + K + R + GS+E S
Sbjct: 157 GSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHR 216
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELF 164
++V NALIS Y G+VD+AR +F MS D + +I ++ L E F
Sbjct: 217 CNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAF 270
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL++ VF+++ S+ WN++I G++ + + + ++L S ++ T +
Sbjct: 372 DLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILP 431
Query: 96 GFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
F R ++ E C ++R + + N+L+ Y GE+ A+ +F
Sbjct: 432 LFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVF 482
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL VF K+ + +F WN ++ GY++ + +Y +L +R D YTFP +
Sbjct: 143 GDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVL 202
Query: 95 K--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ G D+A E V+R V V NALI+ Y CG++ AR +F
Sbjct: 203 RTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M ++KQ HS ++LGL T H + + L + GD+ Y K+F + P FL+NT+
Sbjct: 15 MAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLF 74
Query: 60 KGYSRIDSHKN-GVLMYLDLLKSDVRRDNYTFPFLFKGF-----TRDIAGSLEKSCIVMR 113
K + + + +L Y +L+ V + +TFP L + + + + K
Sbjct: 75 KAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLHAHVLKFGFGGD 134
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ N LI Y G +D AR +F
Sbjct: 135 TYALNNLIHVYFAFGSLDDARRVF 158
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G+ + +VFRK+ + V WN+MI G R + + + + ++L S+V D +TF
Sbjct: 98 LMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTF 157
Query: 91 PFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+ G R + G + + I + + +ALI Y CG ++ A+ +F
Sbjct: 158 ASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQH 217
Query: 143 DD 144
DD
Sbjct: 218 DD 219
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG------ 96
+F KI++PSV WNT++ GY + + H++ + ++ + +V+ D T +
Sbjct: 373 MFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI 432
Query: 97 --FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
F R + + + + +FV + L+ Y CG++ +AR IF E D
Sbjct: 433 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 482
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS +++ L + + +Y K G + +F K+T+ V WN++I G +
Sbjct: 437 RQVHSASVRFLLHNDMFVA--SGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLT 494
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+K + + ++ + ++ + +R I + K V+
Sbjct: 495 IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVY 554
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKA---VDDDLHELFPEYLVQM 171
V +ALI Y CG +D AR F M ++ +E+I A + D ELF EY++
Sbjct: 555 VGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELF-EYMLTT 613
Query: 172 LALPD 176
PD
Sbjct: 614 EQKPD 618
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ Q+KQ+H+ + G L+ ++ + + +G + VF +I P F++NT+I
Sbjct: 21 LRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD-------VRRDNYTFPFLFKGFTRDIAGS-------- 104
+G + D+ ++ V +Y + + +R D TFPF+ + AG
Sbjct: 81 RGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAH 140
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K+ FV+NALI + G++ A +F +D
Sbjct: 141 VVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
>gi|326499065|dbj|BAK06023.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T ++LY + G L C+VF+ + + W T+I GY+R D+ L L++ V
Sbjct: 214 TSLIILYARCGQLGNACRVFQDMPIKNTVSWTTLISGYAR-DNQVEPCLRVFQLMRQSVC 272
Query: 85 RDN-YTFPFLFKGFTRDIAGSLEKSC--IVMR------VFVQNALISTYCLCGEVDMARG 135
R N TFP +F T +L KS + +R V V NALIS Y CG + A+
Sbjct: 273 RPNDITFPTIFSVCTNHALLALGKSIHGLELRMGFDLCVHVSNALISMYVKCGNIIEAQS 332
Query: 136 IF-YMSCED 143
IF + C+D
Sbjct: 333 IFESIVCKD 341
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYL-LLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ Q+KQ+H+ + G L+ ++ + + +G + VF +I P F++NT+I
Sbjct: 21 LRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD-------VRRDNYTFPFLFKGFTRDIAGS-------- 104
+G + D+ ++ V +Y + + +R D TFPF+ + AG
Sbjct: 81 RGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAH 140
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K+ FV+NALI + G++ A +F +D
Sbjct: 141 VVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH +K +P Q + +Y K G +K KVF + P+V W +MI GYS
Sbjct: 179 KKIHDHVLKSNY--QPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYS 236
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + ++MY+ + +S D TF + K R + + KS +
Sbjct: 237 QNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLT 296
Query: 116 VQNALISTYCLCGEVDMARGIF 137
QNALIS Y G+++ A +F
Sbjct: 297 SQNALISMYTNFGQIEHASNVF 318
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ IK H Q + +Y G +++ VF +I + W TMI GY
Sbjct: 280 RQLHAHVIKSWF--GHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYI 337
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
++ + ++ DLL+ + N + F +F + + + G K + V
Sbjct: 338 QLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNV 397
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F +L Y G + A+ F
Sbjct: 398 FAGCSLCDMYAKFGFLPSAKMAF 420
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y +V +I P++F++N +I+G S ++ +N Y+ L+ + DN T PFL K
Sbjct: 67 LHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKA 126
Query: 97 FTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ G K +VQN+L+ Y G+++ AR +F C D
Sbjct: 127 CAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFD 182
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 20/152 (13%)
Query: 4 LKQIHSQTIKLG-LLTKPHCPKQTRYLLLYEK-GDLKYECKVF-------RKITQ-PSVF 53
LK IHS G LL PH R ++LY K GDL +F TQ P+ F
Sbjct: 41 LKLIHSSLSTRGFLLHTPHF--LARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSF 98
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSL 105
L NTM++ Y+ + +Y+ + + V +N+T+PF+ K F + G +
Sbjct: 99 LCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQV 158
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ +FV+ AL+ Y CGE+ A +F
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVF 190
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G+ + +VFRK+ + V WN+MI G R + + + + ++L S+V D +TF
Sbjct: 137 LMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTF 196
Query: 91 PFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+ G R + G + + I + + +ALI Y CG ++ A+ +F
Sbjct: 197 ASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQH 256
Query: 143 DD 144
DD
Sbjct: 257 DD 258
>gi|218186279|gb|EEC68706.1| hypothetical protein OsI_37186 [Oryza sativa Indica Group]
Length = 416
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY + G L +VF ++ PS W +I Y
Sbjct: 91 EQLHARSLKLPSHTNPHV--LTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYM 148
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ I VF
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 208
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 209 VATAAVDLYVKCGEMAKAREVF 230
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+L G+ + +VF K+ + VF WN M+ GY + + +Y ++ + VR D YT
Sbjct: 132 MLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYT 191
Query: 90 FPFLFK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
FP + + G D E V+R V V NAL++ Y CG+V AR +F
Sbjct: 192 FPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVF 247
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ ++ G + +Y K GD+ KVF +T WN MI G+
Sbjct: 209 REVHAHVLRFGF--GEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHF 266
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
G+ ++L +L +V+ + T + F +++ G K V
Sbjct: 267 ENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVA 326
Query: 116 VQNALISTYCLCGEVDMARGIF 137
N+LI Y G + AR +F
Sbjct: 327 FCNSLIQMYASLGMMRQARTVF 348
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG----DLKYECKVFRKITQPSVFLWNTMIK 60
K IH+Q I G P T+ L+LY + DL Y K+F ++ + ++ WNTMI
Sbjct: 91 KSIHTQMISNGY--NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMIL 148
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF----TRDIAGSLEKSCIVM---- 112
Y+R+D + ++ +LK V DN+TF + +RD + I
Sbjct: 149 AYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 208
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
FV NALI Y C + + +F
Sbjct: 209 DTFVGNALIDMYAKCDDEESCLKVF 233
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
KQ+HS+ I G K + +Y K D + C KVF ++ + + WN++I +
Sbjct: 195 KQVHSKLIACGF--KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA 252
Query: 64 RIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
+ + ++++L + +S+ ++ D +TF L R I L ++ I
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ V+ L+ Y CG ++ A+ IF
Sbjct: 313 IIVETELVHMYSECGRLNYAKEIF 336
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/151 (18%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+Q +QIH+ I+ + TK + + E G L Y ++F ++ + + + WN+MI+G
Sbjct: 295 NQGRQIHAHLIRANI-TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEG 353
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
Y + + + ++ + + ++ D ++ + R++ + ++ +
Sbjct: 354 YQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE 413
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+Q L+ Y CG +D A ++ + + D
Sbjct: 414 GILQVVLVDMYAKCGSMDYAWKVYDQTIKKD 444
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 20/110 (18%)
Query: 31 LYEK-GDLKYECKVFRKITQP--SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
+Y K G + Y KV+ + + + LWN+++ GY+ K +L++L+SD+ D
Sbjct: 423 MYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDV 482
Query: 88 YTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T IV + ++ AL+ Y CG + AR +F
Sbjct: 483 LTMV-----------------TIVNLLVLETALVDMYSKCGAITKARTVF 515
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D L +F K+ +VF W +I
Sbjct: 90 KQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKC 149
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++++ DN+ P + K F R + G + K+ + VF
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVF 209
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 210 VASSLADMYGKCGVLDDARKVF 231
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
L QIH+ + GL++ + Y L G LKY K+F +I +P V + N +++G
Sbjct: 28 LMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGS 87
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
++ + V +Y ++ K V D YTF F+ K ++ I G + + ++
Sbjct: 88 AQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNE 147
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+V+NALI + CG++ +A +F
Sbjct: 148 YVKNALILFHANCGDLGIASELF 170
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F + T+ V WN MI GY K + ++ ++ + D T L +
Sbjct: 230 ELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACA--V 287
Query: 102 AGSLE---------------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G LE S I + + NALI Y CG +D A +F
Sbjct: 288 LGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVF 338
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD++ ++F ++ PS+ WNT++ GYS+ ++HK V ++ ++ V D T
Sbjct: 336 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 395
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + +K+ +++ + LI Y CG+V+MA+ IF
Sbjct: 396 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIF 448
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+HSQ + G + + + +Y K GD+ VF + + WN MI
Sbjct: 507 LSQGRQVHSQIAREGYMNDAFVG--SALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMI 564
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GY++ VL+Y D++ S + D TF
Sbjct: 565 HGYAQNGCGDEAVLLYEDMIGSGEKPDGITF 595
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ + K T + + + +Y K G ++ ++F +I + + WN+M+ G S
Sbjct: 410 RQVHAVSQKAVFRTDIYLA--SGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLS 467
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------------RDIAGSLEKSC 109
K + + R+ FP F T R + + +
Sbjct: 468 LNSLDKEAFTFFKKM------REKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREG 521
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYM 139
+ FV +ALI Y CG+VD AR +F M
Sbjct: 522 YMNDAFVGSALIDMYSKCGDVDAARWVFDM 551
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 20/152 (13%)
Query: 4 LKQIHSQTIKLG-LLTKPHCPKQTRYLLLYEK-GDLKYECKVF-------RKITQ-PSVF 53
LK IHS G LL PH R ++LY K GDL +F TQ P+ F
Sbjct: 41 LKLIHSSLSTRGFLLHTPHF--LARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSF 98
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSL 105
L NTM++ Y+ + +Y+ + + V +N+T+PF+ K F + G +
Sbjct: 99 LCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQV 158
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ +FV+ AL+ Y CGE+ A +F
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVF 190
>gi|222625418|gb|EEE59550.1| hypothetical protein OsJ_11828 [Oryza sativa Japonica Group]
Length = 151
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M L+Q+H+ +K GL P + + D Y ++ R +P+ F+WNT I+
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 107
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ V +++D+L S + TFP LF
Sbjct: 108 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAA 143
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+++ K++HSQ ++ + T + +Y K G L+ KVF ++ + + WN I
Sbjct: 369 LNRGKELHSQIVRTAW--EADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFI 426
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
R S K ++ + + DV D+ TF L T R I G +++ ++
Sbjct: 427 ACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGML 486
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFY 138
V NALIS Y CG++ AR +FY
Sbjct: 487 SNNLVANALISMYGRCGKLADAREVFY 513
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIHS K G + + T + +Y K G L+ KVF ++ + +V W MI GY
Sbjct: 172 EQIHSHITKAGYESDVNVS--TALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYV 229
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ K +++ L++S + + +F + T + ++++ + V
Sbjct: 230 QHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVL 289
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NALIS Y CG + AR +F
Sbjct: 290 VGNALISMYARCGSLANARQVF 311
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G ++ VF+ + V WN MI GY+ + V ++ + + ++ + +
Sbjct: 95 MYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNS 154
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + F I + K+ V V ALI+ YC CG +++AR +F
Sbjct: 155 FISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVF 210
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L +VF + P+ WN MI GY + ++ D+ + + D +T+ L
Sbjct: 302 GSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLL 360
Query: 95 K--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+++ + ++ V V ALIS Y CG ++ AR +F
Sbjct: 361 AICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVF 411
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH + + G+L+ + +Y + G L +VF +I + + WN MI Y
Sbjct: 474 RYIHGKIDQWGMLSNNLVANA--LISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYV 531
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ ++ + +++ + D YTF + + R I G +EK+ + +
Sbjct: 532 QHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIR 591
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ LI Y CG + A +F E D
Sbjct: 592 ILTTLIKMYSKCGSLRDAYSVFKNVQEKD 620
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK GL + K +L D L Y VF I +P + +WNTM
Sbjct: 15 LQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTM 74
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPFL K + A G + K
Sbjct: 75 FRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGF 134
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ +++ +LIS Y G ++ A+ + S D
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+L+ C +F+ ++ V WNT+I GY+ ++ +K +L++ D+L+S + ++ T
Sbjct: 279 LYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVT 338
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A+ +F
Sbjct: 339 MLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVF 396
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G ++ K+F +I V WN I GY+ ++K + ++ ++K++VR D T
Sbjct: 181 SRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVT 240
Query: 93 LFKGFTRDIAGSLE-----KSCIVMRVF-----VQNALISTYCLCGEVDMARGIF 137
+ + +GS+E S I F + NALI Y CGE++ A G+F
Sbjct: 241 VLSACAQ--SGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLF 293
>gi|449491452|ref|XP_004158900.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 547
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E GD+ Y +FR I P+ F N +IK YS V +Y + L + +R D+YTF
Sbjct: 94 EFGDIVYTVLIFRHIKVPNTFCVNRVIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLS 153
Query: 93 LFKGFTRDIAGSLEKSC--------IVMRVFVQNALISTYCLCGEVDMARGIF-YMSCED 143
LF G+ + C + + + N+LI Y C +++ R +F MS +D
Sbjct: 154 LFSACASFGCGASGRKCHGQAFKNGVDSVMVLGNSLIHMYGCCKHIELGRKVFDEMSTQD 213
Query: 144 DDGLHELIRIKAVDDDL---HELF 164
+ ++ A DL H++F
Sbjct: 214 LVSWNSIVTAYARVGDLYTAHDMF 237
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL +F + + +V WN MI Y R + + ++ +++ +R +N T +
Sbjct: 228 GDLYTAHDMFDVMPERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVL 287
Query: 95 KGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+R + G + ++ + VF+ AL+ Y C V +AR +F
Sbjct: 288 SACSRSARLNEGRSVHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVF 338
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 24 KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
K + L++ G L Y VF +I P+ F N++I+GY+ + + +L Y ++ +
Sbjct: 15 KIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGL 74
Query: 84 RRDNYTFPFLFKGFTRDIAGS-----LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
D +TFP LFK G K ++QN L++ Y CG + AR +F
Sbjct: 75 DPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVF 133
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 32 YEKGDLKYEC-KVFRKITQPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
Y + DL +E K+FR++ S +F WN MI G+ ++ + ++ ++ S V+ D T
Sbjct: 151 YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 210
Query: 90 FPFLFKGFTRDIAGSL--------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L T A L EK I + V + AL+ Y CG ++ A +F
Sbjct: 211 MASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 266
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD++ ++F ++ PS+ WNT++ GYS+ ++HK V ++ ++ V D T
Sbjct: 365 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 424
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + +K+ +++ + LI Y CG+V+MA+ IF
Sbjct: 425 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIF 477
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+HSQ + G + + + +Y K GD+ VF + + WN MI
Sbjct: 536 LSQGRQVHSQIAREGYMNDAFVG--SALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMI 593
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GY++ VL+Y D++ S + D TF
Sbjct: 594 HGYAQNGCGDEAVLLYEDMIGSGEKPDGITF 624
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ + K T + + + +Y K G ++ ++F +I + + WN+M+ G S
Sbjct: 439 RQVHAVSQKAVFRTDIYLA--SGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLS 496
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------------RDIAGSLEKSC 109
K + + R+ FP F T R + + +
Sbjct: 497 LNSLDKEAFTFFKKM------REKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREG 550
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYM 139
+ FV +ALI Y CG+VD AR +F M
Sbjct: 551 YMNDAFVGSALIDMYSKCGDVDAARWVFDM 580
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPK--QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
Q +Q+H+ LL K H T+ +L+Y K G L+ KVF ++++ ++F WN ++
Sbjct: 64 QGQQLHA------LLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALM 117
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ + + +Y D+ V D TFP + K +I G K
Sbjct: 118 GAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYG 177
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF---YMSCEDDDGLHELIRIKAVDDDLHE 162
VFV NALI+ Y CG++ AR +F M ED + +I + + E
Sbjct: 178 EFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLE 231
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKV-----FRKITQPSVFLW 55
+ L +IH+Q + GL + R L +L Y C + F T P W
Sbjct: 44 NHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMP----W 99
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEK 107
N +I+GYS DS + + ++ ++ + VR +N TFPFL K + K
Sbjct: 100 NFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIK 159
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + V+V+N LI+ Y C + AR +F
Sbjct: 160 CGLDLDVYVRNTLINFYGSCKRMSGARKVF 189
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKI--TQPSVFLWN 56
+ Q+K IH + + G+LT T +L+ G L + + R+ + V+ WN
Sbjct: 41 ISQVKLIHQKLLSFGILTL----NLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWN 96
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTR-------DIAGSLEKS 108
++I+ Y + N L L+ S DNYTFPF+FK D + +L +
Sbjct: 97 SLIRSYGN-NGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRV 155
Query: 109 CIVM-RVFVQNALISTYCLCGEVDMARGIF 137
M VFV NAL++ Y CG + AR +F
Sbjct: 156 TGFMSNVFVGNALVAMYSRCGSLSDARKVF 185
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q+ QI +Q I G + PK ++ + Y ++F +I P++ LWN+M +G
Sbjct: 53 QVHQIQAQIIANGFQYNEYITPKLVTICATLKR--MTYARQLFDQIPDPNIALWNSMFRG 110
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV----- 114
Y++ +S++ V ++ + D+R + +TFP + K G + + C +++
Sbjct: 111 YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGN 170
Query: 115 -FVQNALISTYCLCGEVDMARGIFYMSCE 142
FV LI Y G V A IF CE
Sbjct: 171 PFVGTTLIDMYSAGGTVGDAYKIF---CE 196
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y ++F +I P++F++N MI+G+S + Y+ + + DN TFPFL K
Sbjct: 17 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 76
Query: 97 FTR--------DIAGSLEKSCIVMRVFVQNALIST-YCLCGEVDMARGIF 137
T+ G + K V+VQN+L+ + CG+V+ AR +F
Sbjct: 77 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLF 126
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
Q H IK G + ++ + GD++ K+F ++ + ++ W+TMI GY++
Sbjct: 88 QAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQ- 146
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYC 125
++H + + +L+S R N T + G T + + + AL+ Y
Sbjct: 147 NNHFDKAVELFKVLQSQGVRANETVMVIKNGMT-------------LNLILGTALVDMYA 193
Query: 126 LCGEVDMARGIF 137
CG +D A +F
Sbjct: 194 RCGSIDKAVWVF 205
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 17 LTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
L +P+ TR L + E G + +F K+ F+WN +I+GY+ + + Y
Sbjct: 53 LARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFY 112
Query: 76 LDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+ +R DN+TFPF+ K + + G L K + V+V N LI Y
Sbjct: 113 YRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKI 172
Query: 128 GEVDMARGIF 137
G +++A +F
Sbjct: 173 GFIELAEKVF 182
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH I+ L P+ +T + +Y K G+LK VF ++ + ++ WNTM+ Y
Sbjct: 331 KSIHGFAIRKMFL--PYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYV 388
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + +K + M+ +L ++ D T + + I + K + F
Sbjct: 389 QNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTF 448
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAV 156
+ NA++ Y CG++ AR F M C+D + +I A+
Sbjct: 449 ISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAI 490
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IH Q I+ L + QT + +Y K G + Y +VF +I ++ WN MI G
Sbjct: 246 EIHCQVIRSEL--ELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE 303
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTY 124
D V+ ++LL S + L +G + I G + + + ++ AL+ Y
Sbjct: 304 DDKVIPDVITMINLLPSCSQSGA-----LLEG--KSIHGFAIRKMFLPYLVLETALVDMY 356
Query: 125 CLCGEVDMARGIF 137
CGE+ +A +F
Sbjct: 357 GKCGELKLAEHVF 369
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
+++H + IK+G + +L+ +Y K G ++ KVF ++ + WN+M+ GY
Sbjct: 144 QKVHGKLIKIGFDLDVYV---CNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGY 200
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--IAGSLEKSCIVMR------V 114
+ ++ + ++L+ + D + + + + +E C V+R +
Sbjct: 201 QIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDI 260
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
VQ +LI Y CG+VD A +F
Sbjct: 261 MVQTSLIDMYGKCGKVDYAERVF 283
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RD 100
+ + FLWNT+I+GYS I G+ +Y +++ VR D++TFPF+ K R+
Sbjct: 4 RTTAFLWNTLIRGYS-IAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGRE 62
Query: 101 IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G + K VFV N L+S Y CG + A +F
Sbjct: 63 VHGXVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVF 99
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
+++H +I++GL + + +Y K E VF K+ +V WN MI ++
Sbjct: 264 REVHGSSIRMGLESDIFIANS--LIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFA 321
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI-AGSLEKSCIVMRV 114
+ V + + ++ TF + R +I A S+ C +
Sbjct: 322 QNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGC-AFDL 380
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHE---LFPEYLVQM 171
FV NAL Y G + +AR +F S D+ + LI + D E LF E +Q+
Sbjct: 381 FVSNALTDMYAKSGHLKLARNVFDTSLRDEVSYNILIVGXSQTSDCSESLSLFSE--MQL 438
Query: 172 LALPD---TFMG 180
+ L +FMG
Sbjct: 439 MGLKQDNVSFMG 450
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+++I +G + Y K G LK VF + V +N +I G S
Sbjct: 365 KEIHARSIHMGCAFDLFVSNALTDM--YAKSGHLKLARNVFDTSLRDEVS-YNILIVGXS 421
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ ++ +++DN +F ++I G L + + +F
Sbjct: 422 QTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLF 481
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+L+ Y CG + +AR IF
Sbjct: 482 VANSLLDFYTKCGRIGLARNIF 503
>gi|125524838|gb|EAY72952.1| hypothetical protein OsI_00823 [Oryza sativa Indica Group]
Length = 658
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
Query: 27 RYLLLYEK-GDLKYECKVFRKITQPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
+ +L+Y K GDL+ KVF ++ Q S V +W +++ GY++ ++GVL++ + S VR
Sbjct: 134 KLVLMYVKCGDLENARKVFDEMPQVSDVRVWTSLMSGYAKAGEFQDGVLLFRQMHCSGVR 193
Query: 85 RDNYTFPFLFK-----GFTRD---IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D + + K G D + G LEK + ++ V NALI+ Y CG VD + +
Sbjct: 194 PDAHAISCVLKCIAGLGSIADGEVVHGYLEKLGLGVQCAVGNALIALYSRCGHVDGSLQV 253
Query: 137 F 137
F
Sbjct: 254 F 254
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQ-------TRYLLLYEK-GDLKYECKVFRKITQPS-VFLW 55
+ +H ++K GLL + + ++ + +Y K G+L Y KVF ++ S + W
Sbjct: 317 RVLHGYSVKTGLLWEFESLENGIDENLGSKLVFMYVKCGELGYARKVFDAMSSKSNLHAW 376
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEK 107
N M+ GY+++ + +L++ + + D +T L K T + G L K
Sbjct: 377 NLMMGGYAKLGKFQESLLLFEKMHDCGITPDEHTISCLLKCITGLSGVMDGLVVHGYLVK 436
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V NALIS Y ++ A +F
Sbjct: 437 YGFGAQCAVCNALISFYAKSNRIEDALMVF 466
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D +V F K+ +V+ W +I
Sbjct: 88 KQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKC 147
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++++ DN+ P + K F R + G + KS + VF
Sbjct: 148 RIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVF 207
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 208 VASSLADMYGKCGVLDDARKVF 229
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLL----YEKGDLKYECKVFRKITQPSVFLWNTMI 59
++QIH + G+ + R LLL +G + Y KVF I +P +F+ N M+
Sbjct: 14 VRQIHGHLVVGGIAAAR--LQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMV 71
Query: 60 KGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
+GY+ + + +Y + + S +R D +TF +L + R + G++ K
Sbjct: 72 RGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGF 131
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ +V+NALI+ + CG++ +A + + E D
Sbjct: 132 LKDAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH Q +K+ T L +Y K G++K KVF IT +V W +MI GY
Sbjct: 174 KKIHCQIVKVPSFDNV---VLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYV 230
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
+ D ++ G++++ + ++ V + YT+ L T+ A G L KS I +
Sbjct: 231 KNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSC 290
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L+ Y CG++ AR +F
Sbjct: 291 LVTSLLDMYVKCGDISNARRVF 312
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 5 KQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH +IK+G+ T Y Y+ D KY VF ++ + WN++I G+S
Sbjct: 375 RSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKY---VFEMESEKDIVAWNSIISGFS 431
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVM------R 113
+ S + ++ + V + T LF I SL + +
Sbjct: 432 QNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSS 491
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V AL+ Y CG+ + AR IF
Sbjct: 492 VHVGTALLDFYAKCGDAESARLIF 515
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+H+ ++KLG L T L Y K GD + +F I + + W+ MI GY
Sbjct: 475 SSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYG 534
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
+ K + ++ ++LK + + TF
Sbjct: 535 KQGDTKGSLELFEEMLKKQQKPNESTFT 562
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+HQ K H IK G+ + T L +Y K GD+ +VF + + + +W MI
Sbjct: 270 LHQGKWFHGCLIKSGI--ELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 327
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY+ S + ++ + ++ + T + G R I G L +
Sbjct: 328 VGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHG-LSIKVGI 386
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V NAL+ Y C + A+ +F M E D
Sbjct: 387 WDTNVANALVHMYAKCYQNRDAKYVFEMESEKD 419
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG---DLKYECKVFRKITQPSVFLWNTMIK 60
LKQIH+ IK TR L + D +Y + ++ P++ L+N +I+
Sbjct: 53 LKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIR 112
Query: 61 GYSRIDSHK-NGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G + ++ G+++Y +L + DNYT PF+ K ++ G K +
Sbjct: 113 GLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLA 172
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V+V N L+ Y +C + AR +F S + D
Sbjct: 173 SDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD 205
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 31/134 (23%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H Q IK+GL + + + +Y D ++ KVF Q + W TMI+GY
Sbjct: 160 EEVHGQAIKMGLASDVYV--SNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 217
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALIST 123
++ + GV +Y+ +R N + + VFV NAL+
Sbjct: 218 KMGFAREGVGLYI------IRNSN----------------------VNLDVFVGNALVDM 249
Query: 124 YCLCGEVDMARGIF 137
Y CG+ + AR +F
Sbjct: 250 YLKCGDANFARKVF 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD + KVF+++ +V WN+MI G ++ K + M+ + + V+ D+ T +
Sbjct: 254 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 313
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + L+++ I F+ NAL+ Y CG +D A +F
Sbjct: 314 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVF 364
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q+ QI +Q I G + PK ++ + Y ++F +I P++ LWN+M +G
Sbjct: 116 QVHQIQAQIIANGFQYNEYITPKLVTICATLKR--MTYARQLFDQIPDPNIALWNSMFRG 173
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV----- 114
Y++ +S++ V ++ + D+R + +TFP + K G + + C +++
Sbjct: 174 YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGN 233
Query: 115 -FVQNALISTYCLCGEVDMARGIFYMSCE 142
FV LI Y G V A IF CE
Sbjct: 234 PFVGTTLIDMYSAGGTVGDAYKIF---CE 259
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y +F +I P++F++N +I+ +S Y +LKS + DN TFPFL K
Sbjct: 69 LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 128
Query: 97 FTR---DIAGSLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIF 137
T + G S IV V+V+N+L+ Y CG + A IF
Sbjct: 129 STEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIF 177
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 1 MHQLKQIHSQTIKLGLL-TKPHCPKQTRY-LLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
+ QLKQ+H+Q I ++ T P + + L GDL ++F +P+ F+WNT+
Sbjct: 31 LDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFHSTPRPNSFMWNTL 90
Query: 59 IKGYSRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMRV- 114
I R +H L +Y+ + +S+V +TFPFL K R S + V++
Sbjct: 91 I----RAQTHAPHALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIKFG 146
Query: 115 -----FVQNALISTYCLCGEVDMARGIF 137
V +AL+ Y + G AR +F
Sbjct: 147 LDFDSHVVDALVRCYSVSGHCVSARQVF 174
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 28 YLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86
YLL + D+ Y K+ K++ P + WN +I+G+S + + + +Y+ +L+S D
Sbjct: 794 YLLAVDATSDVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPD 853
Query: 87 NYTFPFLFKGFT----RDIAGSLE----KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T+PFL K + R+I GSL K+ + +F+ N LI Y + AR +F
Sbjct: 854 HMTYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLF 912
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMI 59
+ Q KQ+H++ I L LT P ++ + Y K + YE KVF KI ++F WN M+
Sbjct: 50 LRQAKQLHAR-IVLSSLT-PDNFLASKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAML 107
Query: 60 KGYSRIDSHKN---GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL---EKSCIVMR 113
GYS + H + + L ++ DN+T + K + S+ E C V+R
Sbjct: 108 IGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLR 167
Query: 114 ------VFVQNALISTYCLCGEVDMARGIF 137
+FV NALI+ Y C E +AR +F
Sbjct: 168 HGFDSDIFVVNALITYYSRCDEYGIARILF 197
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL VF ++ + ++F WN ++ GY++ + +Y +L ++ D YTFP + +
Sbjct: 152 DLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIKPDIYTFPCVLR 211
Query: 96 --GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
G D E C V+R V NALI+ Y CG V AR +F
Sbjct: 212 SCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVF 261
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K G + P +T + Y K D+ KVF +IT ++ W+TMI GY+
Sbjct: 112 QQVHANVLKSGFGSSPFV--ETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYA 169
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
RI + ++ D+ K+ V D T + A + K I +
Sbjct: 170 RIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLE 229
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVD----DDLHELF 164
+ AL++ Y CG ++ A+ +F M +D +I A++ D L E F
Sbjct: 230 LSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFF 283
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 1 MHQLKQIHSQ---------TIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPS 51
M L+QIH++ +I GL K + L GD+ Y K+F +I +P+
Sbjct: 1 MRVLRQIHARLLTHAMPISSISFGLC------KIIGFCALSPYGDIDYARKLFSQIQRPN 54
Query: 52 VFLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT--------RDI 101
+F WN+MI+G S+ + K V+++ +++ N +T F+ K + + +
Sbjct: 55 IFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQV 114
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ KS FV+ AL++ Y C ++ +A +F
Sbjct: 115 HANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVF 150
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----GDLKYECKVFRKITQPSVFLWN 56
+ +KQI + K L + P + LLL+ L Y ++F I P VF++N
Sbjct: 18 LRTVKQIQALIFKTCLNSYPLVSGK---LLLHCAVTLPDSLHYARRLFLDIRNPDVFMYN 74
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFT--RDIAGSLEKSCIVM- 112
T+I+G S D+ N + +++++ + V D+++F FL K R + L+ C+ +
Sbjct: 75 TLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVG 134
Query: 113 -----RVFVQNALISTYCLCGEVDMARGIF 137
+FV LIS Y C + AR +F
Sbjct: 135 YGLDSHLFVGTTLISMYAECACLVFARKVF 164
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L+ +VF K+ W+TMI G++ + + + ++ + +R + +
Sbjct: 215 KAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTG 274
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ F R + G +EKS + + V NALI TY CG +DMAR +F
Sbjct: 275 VLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVF 327
>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 501
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+Q +G + + + L+LY GDL+ +FR + + WN MI GY
Sbjct: 128 KRIHAQMFVVGFALNEYL--KVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYV 185
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + G+ +Y D+ ++ + D YTF +F+ + + + K CI +
Sbjct: 186 QKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNII 245
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +AL+ Y C +F
Sbjct: 246 VDSALVDMYFKCSSFSDGHRVF 267
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y KVF + LWN+M+ GY++ S + + ++ +L++ VR TF L
Sbjct: 221 MDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPA 280
Query: 97 F--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + L ++ +F+ ++LI YC CG VD+AR +F
Sbjct: 281 FGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVF 329
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K G + P +T + Y K D+ KVF +IT ++ W+TMI GY+
Sbjct: 181 QQVHANVLKSGFGSSPFV--ETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYA 238
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
RI + ++ D+ K+ V D T + A + K I +
Sbjct: 239 RIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLE 298
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVD----DDLHELF 164
+ AL++ Y CG ++ A+ +F M +D +I A++ D L E F
Sbjct: 299 LSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFF 352
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 1 MHQLKQIHSQ---------TIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPS 51
M L+QIH++ +I GL K + L GD+ Y K+F +I +P+
Sbjct: 70 MRVLRQIHARLLTHAMPISSISFGLC------KIIGFCALSPYGDIDYARKLFSQIQRPN 123
Query: 52 VFLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT--------RDI 101
+F WN+MI+G S+ + K V+++ +++ N +T F+ K + + +
Sbjct: 124 IFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQV 183
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ KS FV+ AL++ Y C ++ +A +F
Sbjct: 184 HANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVF 219
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH--CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
++QL+QI +Q + L + KP+ PK E GD Y +F +P+ + +N M
Sbjct: 50 VNQLRQIQAQML-LHSVEKPNFLIPKAV------ELGDFNYSSFLFSVTEEPNHYSFNYM 102
Query: 59 IKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSC 109
I+G + + H+ + +Y + S ++ D +T+ F+F G R + SL K
Sbjct: 103 IRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVG 162
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V + ++LI Y CG+V AR +F
Sbjct: 163 LERDVHINHSLIMMYAKCGQVGYARKLF 190
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +HS K+GL H +++Y K G + Y K+F +IT+ WN+MI GYS
Sbjct: 152 RSVHSSLFKVGLERDVHINHSL--IMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYS 209
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS--LEKSCIVMRV----F 115
K+ + ++ + + D T + + D+ LE+ I ++ F
Sbjct: 210 EAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF 269
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ + LIS Y CG++D AR +F
Sbjct: 270 LGSKLISMYGKCGDLDSARRVF 291
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
+Q HS+ + LGL T+ + Y Y + VF + +VFLWN++I G
Sbjct: 43 RQSHSRILSLGLSQNSFLA--TKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCV 100
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++ + SDV D++T L K + + I G ++ V
Sbjct: 101 KNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTV 160
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDD--DLHELFPEYLVQM 171
V N+++S YC CG D +R +F M+ + + LI AV + E E++ QM
Sbjct: 161 VANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQM 219
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-----------YTF 90
+VF ++ +VF W MI GY + ++ D+ D N +F
Sbjct: 289 RVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSF 348
Query: 91 PFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
L G R I G + + V + NALI Y CG +D AR +F EDD
Sbjct: 349 SGLLSG--RQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF----EDD 396
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 16 LLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLM 74
L + + TR L Y E+G +K +F + Q F+WN MI+G+ + V
Sbjct: 54 FLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDF 113
Query: 75 YLDLLKSDVRRDNYTFPFLFK--GFTRDIA------GSLEKSCIVMRVFVQNALISTYCL 126
Y + VR DN+T+PF+ K G D+A G + KS + + +++ N+LI Y
Sbjct: 114 YHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAK 173
Query: 127 CGEVDMARGIF 137
G ++ A +F
Sbjct: 174 IGCIESAEMVF 184
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H + IK GL + +++Y K G ++ VFR++ + WN+MI GY
Sbjct: 146 ERVHGKVIKSGLDLDIYIGNS--LIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYV 203
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFL-----FKGFTRD---IAGSLEKSCIVMRVF 115
+ + + ++ S ++ D ++ + +GF R+ I + +S + + V
Sbjct: 204 SVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVM 263
Query: 116 VQNALISTYCLCGEVDMARGIF 137
VQ +L+ Y CG +D A +F
Sbjct: 264 VQTSLVDMYAKCGRMDYAERLF 285
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+QLKQ H+Q +K GL + + G L + K+F+ I P++ ++NTMI
Sbjct: 18 MNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---CIV----- 111
K N + ++ + ++ + D YT P++ K R L +S C +
Sbjct: 78 KALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSA 137
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV N+L+ Y + AR +F
Sbjct: 138 VNEFVGNSLLVMYRSFDNMRSARQVF 163
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ ++F T +W MI GY + + K G+ M+ + ++V D +
Sbjct: 185 GDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTIL 244
Query: 95 KGFTRDIAGSLEKSCIVMRVF----------VQNALISTYCLCGEVDMARGIFY-MSCED 143
G+L+ + R V LI Y CG +D+A+ +F MS D
Sbjct: 245 SACAH--MGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRD 302
Query: 144 DDGLHELIRIKAVDDD 159
+ + +I A+D D
Sbjct: 303 NVCWNAMISGMAMDGD 318
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M+QLKQ H+Q +K GL + + G L + K+F+ I P++ ++NTMI
Sbjct: 18 MNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---CIV----- 111
K N + ++ + ++ + D YT P++ K R L +S C +
Sbjct: 78 KALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSA 137
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV N+L+ Y + AR +F
Sbjct: 138 VNEFVGNSLLVMYRSFDNMRSARQVF 163
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ ++F T +W MI GY + + K G+ M+ + ++V D +
Sbjct: 185 GDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTIL 244
Query: 95 KGFTRDIAGSLEKSCIVMRVF----------VQNALISTYCLCGEVDMARGIFY-MSCED 143
G+L+ + R V LI Y CG +D+A+ +F MS D
Sbjct: 245 SACAH--MGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRD 302
Query: 144 DDGLHELIRIKAVDDD 159
+ + +I A+D D
Sbjct: 303 NVCWNAMISGMAMDGD 318
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKG---DLKYECKVFRKITQ-----P 50
M +LKQ+HSQ K GL H P L+ E G L+Y K +
Sbjct: 46 MTELKQLHSQITKNGL---NHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMG 102
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA-------- 102
+ ++++++I+G+S ++++ L+ DN+TFPF+ T+ A
Sbjct: 103 THYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVH 162
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G++ K +FV+N+LI Y CGE+D R +F
Sbjct: 163 GAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVF 197
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
Q+H +K+G + + + E G++ +VF K+++ +V W ++I GY++
Sbjct: 160 QVHGAIVKMGF-ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKR 218
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIA-GSLEKSCIV-----MRVFVQ 117
+K V ++ ++++ +R ++ T + + D+ G +CI + +
Sbjct: 219 GCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV 278
Query: 118 NALISTYCLCGEVDMARGIF 137
NAL+ Y CG +D AR IF
Sbjct: 279 NALVDMYMKCGAIDKARKIF 298
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-- 99
+F++I +P++ WN MI+G+S D + MY + + + +N T+ FLFK R
Sbjct: 32 NLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVP 91
Query: 100 DIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
D++ V++ ++V NALI+ Y CG + +A+ +F
Sbjct: 92 DVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVF 135
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L ++F ++Q V W MI YS+ + ++ ++++S V+ D T
Sbjct: 256 KAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVAS 315
Query: 93 LFKGFTRDIAGSL----------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ GSL +K + ++V NALI YC CG V+ A +F
Sbjct: 316 VLSACAH--TGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVF 368
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH++ +KLG + H + +Y G L KVF ++ + + WN+++ GY +
Sbjct: 99 IHARVLKLGF--ESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQC 156
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIVMRVFVQ 117
+ + ++ + + V+ D T + G + +E++ + + V++
Sbjct: 157 KRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLG 216
Query: 118 NALISTYCLCGEVDMARGIF 137
N LI Y G V +ARG+F
Sbjct: 217 NTLIDMYGRRGLVHLARGVF 236
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 31/152 (20%)
Query: 5 KQIHSQTIKLGLL----------TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL 54
KQ+H+ I GLL T HC G + K+F ++ Q L
Sbjct: 41 KQLHAHLITSGLLSIDIRSVLVATYAHC------------GYVHNARKLFDELRQRGTLL 88
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKG--------FTRDIAGSL 105
+N MIK Y + + ++L++L S D DNYT+PF+ K + R + G
Sbjct: 89 YNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLT 148
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
S +FV N+L++ Y CGEV+ AR +F
Sbjct: 149 LVSKFGSHLFVLNSLLAMYMNCGEVEEARKVF 180
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ KVF + + SV WNTMI GY + ++++ ++ S V D + +
Sbjct: 171 GEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVL 230
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
R + G +E+ + ++ V NAL+ Y CG +D AR +F E D
Sbjct: 231 PACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARLVFDNMVERD 287
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +KQI S G L P + + + +GD+ + +F + + + F+WNTM+
Sbjct: 1 MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV--- 114
+ ++ + +Y +L + +NYTF FL + + D++ + +R+
Sbjct: 61 RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 120
Query: 115 ---FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FVQN L+ Y C +D AR +F S D
Sbjct: 121 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRD 153
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++ +K++H+Q ++ + P + L VF +I +P++ +WN MI
Sbjct: 27 LNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIH 86
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR----- 113
G S+ D + + Y + ++ + TF FLFK R D+ M+
Sbjct: 87 GLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFES 146
Query: 114 -VFVQNALISTYCLCGEVDMARGIFYMSCEDDD--------GLHELIRIKAVDDDLHEL 163
+FV NALI Y GE+ MA+ +F E D G ++ R K V D E+
Sbjct: 147 YLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREM 205
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L K+F ++ V W +MI GYS H V ++ +++ S V+ D T
Sbjct: 294 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL 353
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
GSL+ K I VFV N+LI YC CG V+ A +F
Sbjct: 354 SACAH--LGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVF 404
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP--- 91
G+L KVF + + V WN++I GY + + K + ++ ++ +VR D+ T
Sbjct: 162 GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAI 221
Query: 92 ----FLFKGFTRD-IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
FL + D + +++ +V+ +++ N LI Y G +D A +FY
Sbjct: 222 SATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFY 273
>gi|242049240|ref|XP_002462364.1| hypothetical protein SORBIDRAFT_02g024422 [Sorghum bicolor]
gi|241925741|gb|EER98885.1| hypothetical protein SORBIDRAFT_02g024422 [Sorghum bicolor]
Length = 520
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q H+ +K+G ++ P + + Y + G L+ +VF+ +T + W +I GY++
Sbjct: 154 QFHALLVKVGYVSS--IPIGSSLISFYSRCGQLEIAHRVFQNMTAKNTVTWTALISGYAQ 211
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR--------VFV 116
+ + + ++ + +S + ++ TF +F T L KS ++ V V
Sbjct: 212 DNQVEPCLHLFALMRRSVCKPNDITFATIFSVCTNHAFLVLGKSVQALQMRMGFDSYVHV 271
Query: 117 QNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
NALIS Y CG + AR +F ++C+D + LI
Sbjct: 272 SNALISMYAKCGSIGEARAVFESITCKDLVSWNSLI 307
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR- 64
QIHS +IKLG + YL L + G L K+F + ++ WN MI G+++
Sbjct: 287 QIHSLSIKLGYGSSILIKNSIMYLYL-KCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 345
Query: 65 -------IDSHKNG---VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLE 106
+ +HK+G + M+ L +S ++ D +TF + + +A G +
Sbjct: 346 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 405
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
KS ++ V V AL+S Y CG +D A F
Sbjct: 406 KSGVLADVVVGTALVSMYNKCGSIDKASKAF 436
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY + G L +VF ++ PS W +I Y
Sbjct: 91 EQLHARSLKLPSHTNPHV--LTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYM 148
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ I VF
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 208
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 209 VATAAVDLYVKCGEMAKAREVF 230
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + Y +F P++F+WNT+I+GYS DS + + +Y D+ + ++YTF F+
Sbjct: 15 GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++ + K+ + + N LI Y CG +D A +F
Sbjct: 75 NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMF 125
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 13/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HSQ +K GL + P + LY G + Y C +F ++ +P W+TM+ GYS
Sbjct: 87 QELHSQIVKAGLDFET--PLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYS 144
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---------GSLEKSCIVMRV 114
+ + + ++ +V D +T + G D+ ++K + + V
Sbjct: 145 QNGQAVETLKLLREMQAENVSSDAFTLASVV-GVCGDLGVLDLGKWVHSYIDKEGVKIDV 203
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ AL+ Y CG +D A +F E D
Sbjct: 204 VLGTALVGMYSKCGSLDNALKVFQGMAERD 233
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH--CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
++QL+QI +Q + L + KP+ PK E GD Y +F +P+ + +N M
Sbjct: 46 VNQLRQIQAQML-LHSVEKPNFLIPKAV------ELGDFNYSSFLFSVTEEPNHYSFNYM 98
Query: 59 IKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSC 109
I+G + + H+ + +Y + S ++ D +T+ F+F G R + SL K
Sbjct: 99 IRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVG 158
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V + ++LI Y CG+V AR +F
Sbjct: 159 LERDVHINHSLIMMYAKCGQVGYARKLF 186
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +HS K+GL H +++Y K G + Y K+F +IT+ WN+MI GYS
Sbjct: 148 RSVHSSLFKVGLERDVHINHSL--IMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYS 205
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS--LEKSCIVMRV----F 115
K+ + ++ + + D T + + D+ LE+ I ++ F
Sbjct: 206 EAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF 265
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ + LIS Y CG++D AR +F
Sbjct: 266 LGSKLISMYGKCGDLDSARRVF 287
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ VF ++ + +F WN ++ GY++ + +Y +L + +R D YTFP +
Sbjct: 83 GDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVL 142
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R++ + + M V V NALI+ Y CG+V AR +F
Sbjct: 143 RSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLF 193
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
IH+ +I LG + T ++LY K G L K+F I SV WN MI GY +
Sbjct: 126 AIHAHSILLGFGSDRFV--LTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQ 183
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMR----VFV 116
+ G+ +Y ++ + D+ TF + D+ +E+ + R VF+
Sbjct: 184 NGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFL 243
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL++ Y CG VD AR F
Sbjct: 244 GSALVNMYARCGVVDKARRWF 264
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIH+QTI G+ + + + L G + Y +F +I +P +F+ NT+I
Sbjct: 48 LKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLI 107
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVR-RDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
+ Y+ + + V+ Y ++ +S V D +TFP L K + I + K
Sbjct: 108 RAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGW 167
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V V N L+ Y CG ++ A +F + E D
Sbjct: 168 SSEVSVSNFLVQMYASCGLIESAGLVFDRTPECD 201
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEK 107
P FLWN +++ Y R DS + V +YL +++S+V D YT P + K + D +
Sbjct: 79 PIAFLWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQL 138
Query: 108 SCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
+ +R+ F ++ I+ YC GE++ AR +F
Sbjct: 139 HSVAVRLGFVGDEFCESGFITLYCKAGELENARNVF 174
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+HS ++LG + C ++ ++ LY K G+L+ VF + + + WN +I G +
Sbjct: 136 KQLHSVAVRLGFVGDEFC--ESGFITLYCKAGELENARNVFDENPERKLGSWNAIIGGLN 193
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMR------ 113
V M++++ +S D++T + ++A L K + +
Sbjct: 194 HAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSD 253
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V + N+LI Y CG +D A +F
Sbjct: 254 VMMMNSLIDMYGKCGRMDFAIQVF 277
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIH IK G+ T + K + + L Y ++ +P F++NT++
Sbjct: 185 LRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 244
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR--- 113
+GYS D N V ++++++ K + D+++F F+ K R + + C ++
Sbjct: 245 RGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGL 304
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV LI Y CG V AR +F
Sbjct: 305 DSHLFVATTLIGMYGECGCVGFARKVF 331
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 16 LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
+L + H + G+L+ ++F ++ W+TMI G+S S +
Sbjct: 365 MLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYF 424
Query: 76 LDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+LL++++R + + + F + + G +EKS V V NALI Y C
Sbjct: 425 RELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRC 484
Query: 128 GEVDMARGIF 137
G V MAR +F
Sbjct: 485 GNVPMARLVF 494
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
++Q+KQ H+ I +T P ++L L Y K+F +I QP +F++NTMIK
Sbjct: 192 INQIKQTHANLITTAQITLPVIA--NKFLKNVALASLTYAHKLFDQIPQPDLFIYNTMIK 249
Query: 61 GYSRI-DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKG-------------FTRDIAGSL 105
+S S+ + + ++ L++ S + Y+F F F FT + L
Sbjct: 250 SHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGL 309
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD-----------DGLHELIRIK 154
+ + VFV NALI + G V+ AR +F + + D G ++ K
Sbjct: 310 DGN-----VFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAK 364
Query: 155 AVDDDLHE 162
+ D++HE
Sbjct: 365 ELFDEMHE 372
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G++ ++F ++ + V W+T+I GY ++ + + +L+S+V+ + YT
Sbjct: 358 GNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSAL 417
Query: 95 KGFTRDIAGS--------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+ +A + + I M + +LI Y CGE+D A +F+
Sbjct: 418 AACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFH 469
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQI + IKLG + L +Y K GD+ ++F +I++P W TMI
Sbjct: 1115 LKQGKQIQAYAIKLGF--NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI 1172
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
GY + + +Y + S V+ D YTF L K + + I ++ K
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV +L+ YC CG V A +F
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVF 1258
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
+QIH+ IK P P + +Y K + Y K F + + WNTMI Y+
Sbjct: 914 EQIHALVIKSSF--APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS-----------LEKSCIVM 112
+ + + + DLL+ ++ D +T + + + G K I+
Sbjct: 972 QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031
Query: 113 RVFVQNALISTYCLCGEVDMA 133
FV ALI Y G++D A
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEA 1052
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY + G L +VF ++ PS W +I Y
Sbjct: 138 EQLHARSLKLPSHTNPHV--LTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYM 195
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ I VF
Sbjct: 196 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 255
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 256 VATAAVDLYVKCGEMAKAREVF 277
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
++H T+ LG K R+ + GDL+Y ++F ++ P+ F +NT+I+ ++
Sbjct: 34 RLHDHTVVLG--------KLFRFAAVSPLGDLRYAHRMFDQMPHPTTFFYNTLIRAHAHS 85
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQ 117
+ L + + +++V D ++F FL K +R D+ G++ K + VQ
Sbjct: 86 TTPSLSSLSFNLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFCRHLHVQ 145
Query: 118 NALISTYCLCGEVDMARGIF 137
N LI Y G +AR +F
Sbjct: 146 NGLIHFYANRGMTLLARRVF 165
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L+ +VF ++ Q V W M+ GYS+ + + ++ ++ +S V D T
Sbjct: 189 KAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGVWPDEVTMVS 248
Query: 93 LFKGFTRDIAGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIFY-MSC 141
L G +E +V R V + NALI Y CG ++ A +F+ M+
Sbjct: 249 LVSACAS--LGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTR 306
Query: 142 EDDDGLHELIRIKAVDDDLHELFP--EYLVQMLALPDT 177
+ + ++ + A + E F E++V +PD+
Sbjct: 307 KSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDS 344
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 48 TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEK 107
+ P+ F WN +I+ Y+R++S +N + +Y+ +L++ V D YT P + K ++ A L +
Sbjct: 58 SNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQ 117
Query: 108 SCIVMRV--------FVQNALISTYCLCGEVDMARGIF 137
+ + ++ I+ YC G+ D A +F
Sbjct: 118 QVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVF 155
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS IKLGL + +C ++ ++ LY K GD KVF + +P + WN +I G S
Sbjct: 117 QQVHSYGIKLGLQSNEYC--ESGFINLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLS 174
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMR-------- 113
+ + +++++D+ + D T + G D+ +L+ V +
Sbjct: 175 QGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTV 234
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ + N+LI Y CG +D+A +F
Sbjct: 235 ILMSNSLIDMYGKCGRMDLAYEVF 258
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQI + IKLG + L +Y K GD+ ++F +I++P W TMI
Sbjct: 1115 LKQGKQIQAYAIKLGF--NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI 1172
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
GY + + +Y + S V+ D YTF L K + + I ++ K
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV +L+ YC CG V A +F
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVF 1258
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
+QIH+ IK P P + +Y K + Y K F + + WNTMI Y+
Sbjct: 914 EQIHALVIKSSF--APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS-----------LEKSCIVM 112
+ + + + DLL+ ++ D +T + + + G K I+
Sbjct: 972 QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031
Query: 113 RVFVQNALISTYCLCGEVDMA 133
FV ALI Y G++D A
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEA 1052
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR- 64
QIHS +IKLG + YL L + G L K+F + ++ WN MI G+++
Sbjct: 281 QIHSLSIKLGYGSSILIKNSIMYLYL-KCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 339
Query: 65 -------IDSHKNG---VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLE 106
+ +HK+G + M+ L +S ++ D +TF + + +A G +
Sbjct: 340 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 399
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
KS ++ V V AL+S Y CG +D A F
Sbjct: 400 KSGVLADVVVGTALVSMYNKCGSIDKASKAF 430
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
+K+ H+Q + G P R + Y +L + KVF +++P VF N +IK
Sbjct: 35 NVKKAHAQVVVRGHEQDPFIA--ARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKV 92
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMR 113
Y+ D + +Y + + + YT+PF+ K R I G K + +
Sbjct: 93 YANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLD 152
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+FV NAL++ Y C +V+++R +F
Sbjct: 153 LFVGNALVAFYAKCQDVEVSRKVF 176
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR--DNYTFPFL 93
D++ KVF +I + WN+MI GY+ + +L++ D+L+ + D+ TF +
Sbjct: 168 DVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTV 227
Query: 94 FKGFTR--DIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
F + DI C +++ V LIS Y CG V MAR IF
Sbjct: 228 LPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIF 279
>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++HS ++GL+ + +T+ + +Y K G L KVF +++ ++F W+ MI G S
Sbjct: 103 KELHS---RIGLVENVNPFVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCS 159
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIVMRVF----- 115
R S V ++ +++ V D + P + + G RD+ G L S ++ R
Sbjct: 160 RNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKH 219
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
++N++++ Y CGE+D A+ IF C D+
Sbjct: 220 LRNSIMAVYAKCGEMDCAKKIF--DCMDE 246
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK----SDVRRDNYTFPFLFKGFT--RDIAG 103
P V+ W +MI G+++ K + LDLLK + V +N T + ++
Sbjct: 317 PDVYTWTSMISGFTQ----KGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSM 372
Query: 104 SLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
LE I ++ V V N+LI YC CG++ A+ IF M E D
Sbjct: 373 GLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERD 419
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IHS +K+ L+ + + +Y K GDLK +F +++ V+ WN++I GY +
Sbjct: 375 EIHSIAVKMNLV--DNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQ 432
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMR-VF 115
+++ + +SD + T+ + G+ + D+ S+EK R
Sbjct: 433 AGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAA 492
Query: 116 VQNALISTYCLCGEVDMARGIF 137
N+LIS + G+ D A IF
Sbjct: 493 SWNSLISGFVQSGQKDKALQIF 514
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 48 TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEK 107
+ P+ F WN +I+ Y+R++S +N + +Y+ +L++ V D YT P + K ++ A L +
Sbjct: 58 SNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQ 117
Query: 108 SCIVMRV--------FVQNALISTYCLCGEVDMARGIF 137
+ + ++ I+ YC G+ D A +F
Sbjct: 118 QVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVF 155
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS IKLGL + +C ++ ++ LY K GD KVF + +P + WN +I G S
Sbjct: 117 QQVHSYGIKLGLQSNEYC--ESGFINLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLS 174
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--KGFTRDIAGSLEKSCIVMR-------- 113
+ + +++++D+ + D T + G D+ +L+ V +
Sbjct: 175 QGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTV 234
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ + N+LI Y CG +D+A +F
Sbjct: 235 ILMSNSLIDMYGKCGRMDLAYEVF 258
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y ++F +I P++F++N MI+G+S + Y+ + + DN TFPFL K
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 97 FTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T+ G + K V+VQN+L+ Y G+ + A IF
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIF 177
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++ K+F ++ + ++ W+TMI GY++ ++H + + +L+S R N T
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQ-NNHFDKAVELFKVLQSQGVRANETVMVSV 257
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G+LE K+ + + + + AL+ Y CG +D A +F
Sbjct: 258 ISSCAHL-GALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVF 309
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 18 TKPHCPKQ----TRYLLLYEKGDLKYE-CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGV 72
T PH TR + +Y D Y+ C VF + ++FLWN ++ GY R ++ V
Sbjct: 121 TSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAV 180
Query: 73 LMYLDLLK-SDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALIST 123
++++++ ++ DN+T P + K + G K+ ++ VFV NALI+
Sbjct: 181 FVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAM 240
Query: 124 YCLCGEVDMARGIF 137
Y G V+ A +F
Sbjct: 241 YGKFGFVESAVKVF 254
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+LK+IH ++ G + + G L Y VF + V WN +I G+
Sbjct: 418 KLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGH 477
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
+ + + +YL + S + D +T L R +I GS+ ++ +
Sbjct: 478 VQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDE 537
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F+ +L+S Y CG++ +A+ F
Sbjct: 538 FICISLVSLYVQCGKILLAKLFF 560
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +KQI S G L P + + + +GD+ + +F + + + F+WNTM+
Sbjct: 26 MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 85
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV--- 114
+ ++ + +Y +L + +NYTF FL + + D++ + +R+
Sbjct: 86 RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 145
Query: 115 ---FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FVQN L+ Y C +D AR +F S D
Sbjct: 146 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRD 178
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH Q +K+ T L +Y K G++K KVF IT +V W +MI GY
Sbjct: 162 KKIHCQLVKVPSFDNV---VLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYV 218
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
+ D + G++++ + +++V + YT+ L T+ A G L KS I +
Sbjct: 219 KNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSC 278
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L+ Y CG++ AR +F
Sbjct: 279 LVTSLLDMYVKCGDISNARRVF 300
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 5 KQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H +IK+G+ T Y Y+ D KY VF ++ + WN++I G+S
Sbjct: 363 RSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKY---VFEMESEKDIVAWNSIISGFS 419
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVM------R 113
+ S + ++ + V + T LF + SL + +
Sbjct: 420 QNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSS 479
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V AL+ Y CG+ AR IF
Sbjct: 480 VHVGTALLDFYAKCGDPQSARLIF 503
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RD 100
VF +I +P +LW M++ Y V +Y L+K R D+ F K T +D
Sbjct: 98 VFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQD 157
Query: 101 IAGSLEKSCIVMRV-----FVQNALISTYCLCGEVDMARGIF 137
+ + C +++V V L+ Y CGE+ A +F
Sbjct: 158 LDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVF 199
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+HQ K H +K G+ + T L +Y K GD+ +VF + + + +W MI
Sbjct: 258 LHQGKWFHGCLVKSGI--ELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 315
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY+ S + ++ + +++ + T + G R + G L +
Sbjct: 316 VGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHG-LSIKVGI 374
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V NAL+ Y C + A+ +F M E D
Sbjct: 375 WDTNVANALVHMYAKCYQNRDAKYVFEMESEKD 407
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H+ ++KLG L T L Y K GD + +F I + + W+ MI GY +
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGK 523
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTF 90
+ ++ ++LK + + TF
Sbjct: 524 QGDTIGSLELFEEMLKKQQKPNESTF 549
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H+Q IK + + + + + Y K G+ Y ++ + + W MI GY+
Sbjct: 403 KELHAQIIKNSI--QENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGYN 460
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + D+L V+ + YT+ K R I G + K+ + VF
Sbjct: 461 SVGHNAEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFLNVF 520
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG VD AR +F
Sbjct: 521 VGSSLIDMYMRCGNVDDARRVF 542
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 28 YLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
Y +E D + KVF ++ SV W +I GY + ++ V ++LD++ S VR ++
Sbjct: 126 YARFHEISDAR---KVFDEMPDKSVVSWTAIINGYQKSGNYNEVVRLFLDMVGSGVRGNS 182
Query: 88 YTFPFLFKGFTRDIAGSLEKS--CIVMR-----VFVQNALISTYCLCGEVDMARGIF 137
TF L K L + C V++ V + +A++ Y CG + A +F
Sbjct: 183 LTFVCLLKSCGEQCNTKLGRQVHCCVVKGGWSNVIMDSAVVHFYAQCGHIASASTMF 239
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H +K L K + + +Y + G++ VF K+ + + W +MI GY+
Sbjct: 302 KQLHGAIVKK--LYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTSMISGYA 359
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + +L++ ++ V +N T L +++ + K+ I +
Sbjct: 360 QSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNSIQENLQ 419
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ + L+ YC CGE A I
Sbjct: 420 IGSTLVWCYCKCGEYTYAARIL 441
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKV-----FRKITQPSVFLW 55
+ L +IH+Q + GL + R L +L Y C + F T P W
Sbjct: 44 NHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMP----W 99
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEK 107
N +I+GYS DS + + ++ ++ + VR +N TFPFL K + K
Sbjct: 100 NFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIK 159
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + V+V+N LI Y C + AR +F
Sbjct: 160 CGLDLDVYVRNTLIYFYGSCKRMSGARKVF 189
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK---YECKVFRKITQPSVFLWNT 57
+ L+ +HS+ I L C L+ LK KVF +I + +V + N
Sbjct: 55 IRTLRTVHSRII----LEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINV 110
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSC 109
MI+ Y + GV ++ + +VR D+YTFP + K + R I GS K
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVG 170
Query: 110 IVMRVFVQNALISTYCLCGEVDMAR 134
+ +FV N L+S Y CG + AR
Sbjct: 171 LSSTLFVGNGLVSMYGKCGFLSEAR 195
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
++ Y +F K+ + S+ WN MI Y + V +Y + D + +
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I G +E+ ++ + ++NALI Y CG ++ AR +F
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVF 367
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLW 55
+ +++Q H+ +K GL H L+ + E + Y + +I P+ F
Sbjct: 52 LTEIQQAHAFMLKTGLF---HDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTH 108
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------GFT--RDIAGSLEK 107
N++I+ Y+ + + + ++ ++L V D Y+F F+ K GF R I G K
Sbjct: 109 NSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIK 168
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRI---KAVDDDLHEL 163
S +V VFV+N L++ Y G ++AR + M D + L+ K + D+ L
Sbjct: 169 SGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARAL 228
Query: 164 FPE 166
F E
Sbjct: 229 FDE 231
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ ++F +I V WN MI GY+ S+K + ++ +++K++VR D T +
Sbjct: 146 GNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVL 205
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY-MSCEDDD 145
R + ++ + + NALI Y CG+V+ A G+F +SC+D
Sbjct: 206 SACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVV 265
Query: 146 GLHELI 151
+ LI
Sbjct: 266 SWNTLI 271
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 39 YECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98
Y VF I +P+ +WNTM++GY+ + + +Y+ ++ + ++YTFPFL K
Sbjct: 18 YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77
Query: 99 RD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ I G + K ++V +LIS Y G ++ A +F S D
Sbjct: 78 KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G ++ C +F ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 302 IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVF 359
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 109/273 (39%), Gaps = 63/273 (23%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQP------------- 50
+ +IH++ + G + P+ TR +L + Y + R +
Sbjct: 30 VNKIHARLVTNGFIKNPNLT--TRIVLAFAASRRPYXVEFARFVFHEYXIRSFSPGGGDX 87
Query: 51 -SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI 101
+LWN +IK +S + +L++ +L++ V D ++ + K +R I
Sbjct: 88 EDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQI 147
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-----------------YMSCEDD 144
G L+K+ + +F+QN LI Y CG + AR IF Y+ C
Sbjct: 148 HGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGST 207
Query: 145 DGLHELIRIKAVDDDLHELFPEYLVQMLALPDTFMG-----EGLEVIPK--SQAPREETP 197
+ EL +L PE + +++ G +G+++ K S+ P ++
Sbjct: 208 ESARELF----------DLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLI 257
Query: 198 RVGNLEEGTPQEGRPHEHSQDDMSLISNSIPQR 230
++ +G + GR +D + + +P+R
Sbjct: 258 SWNSMIDGYVKHGRI-----EDAKYLFDVMPRR 285
>gi|224106413|ref|XP_002333684.1| predicted protein [Populus trichocarpa]
gi|222838021|gb|EEE76386.1| predicted protein [Populus trichocarpa]
Length = 307
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQIH+ ++ GL K R+ + GDL Y ++F ++ P+ F +NT+I
Sbjct: 29 MSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLI 88
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99
+GY++ + + + ++ V D +TF FL K +R
Sbjct: 89 RGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSR 128
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+ QIH+Q +K L PK L L VF + P+V L+N++I+
Sbjct: 36 SVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRH--LASAVNVFNHVPHPNVHLYNSIIRA 93
Query: 62 YSRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
++ SH++ + + K+ + DN+T+PFL K R I +EK
Sbjct: 94 HAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYG 153
Query: 113 RVFVQNALISTYCLCGE--VDMARGIFYMSCEDD 144
+FV N+LI +Y CG +D A +F E D
Sbjct: 154 DIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERD 187
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 70 KQIHARILKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKC 129
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++ + DN+ P + K F R + G + K+ VF
Sbjct: 130 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVF 189
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 190 VASSLADMYGKCGVLDEARKVF 211
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 91/222 (40%), Gaps = 27/222 (12%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL---KYECKVFRKITQPSVFLWNTMI 59
Q+KQ+H+ I+ GL + T+ + + K D+ Y VF ++ P+ FLW MI
Sbjct: 57 QIKQVHAHIIRNGLSQCSYV--LTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK----GFTRDIAGSLEKSCIVMRVF 115
+GY+ Y + + V ++TF LFK D+ + I++ F
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174
Query: 116 -----VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHE---LFPE 166
V N++I Y CG + AR +F MS D ELI A D+ LF +
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234
Query: 167 Y-LVQMLALPDTFMG--------EGLEVIPKSQAPREETPRV 199
L M+A G E LE K Q ET V
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L ++H ++L + + Q +L + + + +VF ++ P++ L N MIK Y+
Sbjct: 30 LLRVHGHVVRLRISQSSYLATQIVHLCNAHR-RVTHAARVFAQVRDPNLHLHNAMIKAYA 88
Query: 64 RIDSHKNGVLMYLDLLK-------SDVRRDNYTFPFLFKGFTRDIAGSLEK--------S 108
+ H++ V +Y+ +L+ D +T+PFL K A L K S
Sbjct: 89 QNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRS 148
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
VQN+LI Y G++ +A +F
Sbjct: 149 GCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 90 KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++++ DN+ P + K F R + G + KS + VF
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D A +F
Sbjct: 210 VASSLADMYGKCGVLDDASKVF 231
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 85 QQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRC 144
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++ + DN+ P + K F R + G + K+ + VF
Sbjct: 145 RIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 204
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 205 VASSLADMYGKCGLLDDARKVF 226
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--- 99
+F KI++PSV WNT++ GY + + H++ + ++ + +V+ D T + +R
Sbjct: 374 MFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGI 433
Query: 100 -DIAGSLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++ + + + + +FV + LI Y CG+V +A+ IF M E D
Sbjct: 434 LELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERD 483
Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL + ++ + WNT+I +R DS + MY +L+ + N+T +
Sbjct: 90 GDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVL 149
Query: 95 KGFTRDIAGSLEKSCIVMRV--------FVQNALISTYCLCGEV-DMARGIFYMSCEDDD 145
A + C + V FV+N L+ Y CG V D R +MS ++
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEV 209
Query: 146 GLHELI----RIKAVDDDL 160
++ + AVDD L
Sbjct: 210 SFTAMMGGLAQSGAVDDAL 228
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H Q I P T+ ++ Y K GD+ KVF + SV W M+ GYS
Sbjct: 31 RSVHHQIIASA--APPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYS 88
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVMRVF 115
R + + ++ +L S VR + +T+ + G R + + K V VF
Sbjct: 89 RNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDVF 148
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRI---KAVDDDLHELFPEYLVQM 171
VQ+AL+ + CG V A +F M +D + L+R +A D L P L
Sbjct: 149 VQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLRGA 208
Query: 172 LALPDTF 178
+ LPD F
Sbjct: 209 M-LPDHF 214
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+GD++ KVF IT+ V WN MI GY ++ + ++ ++++++VR D T +
Sbjct: 162 RGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSV 221
Query: 94 FKGFTRDIAGSLEKSCIVMRVF-----------VQNALISTYCLCGEVDMARGIFY-MSC 141
+ +GS+E + + + NA I Y CG+V++A G+F +SC
Sbjct: 222 LSACAQ--SGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSC 279
Query: 142 EDDDGLHELI 151
+D + LI
Sbjct: 280 KDVVSWNTLI 289
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEK--GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
H+Q +K GL + + L + L Y VF +P++ +WNTM++G +
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
+ + MY+ ++ + YTFPFL K R I + K + +
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDD 144
+LIS Y G ++ AR +F S + D
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRD 148
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 28 YLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86
++ LY K GD++ +F ++ V WNT+I GY+ ++ +K +L++ ++L+S +
Sbjct: 257 FIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 316
Query: 87 NYTFPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGI 136
+ T + R I ++K + ++ +LI Y CG+++ A +
Sbjct: 317 DVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQV 376
Query: 137 F 137
F
Sbjct: 377 F 377
>gi|413950564|gb|AFW83213.1| hypothetical protein ZEAMMB73_277915 [Zea mays]
Length = 611
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP--SVFLWNTMIKG 61
+Q+H+ +K G + T+ + Y + G L + F + + + F W +I
Sbjct: 90 RQVHAALVKRGTYYCRNAYVGTKLAVCYARCGALDDAERAFGALPERDRNAFAWAAVIGL 149
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
+SR H + ++ +L++ V DN+ P + K G R + G K+ +
Sbjct: 150 WSRAGLHGRALAGFVAMLEAGVPADNFVVPTVIKACAGLGLAGTGRAVHGHACKAGVAEC 209
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V+V ++L+ Y CGEV+ AR +F
Sbjct: 210 VYVMSSLVDLYGKCGEVEDARAVF 233
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L ++H ++L + + Q +L + + + +VF ++ P++ L N MIK Y+
Sbjct: 30 LLRVHGHVVRLRISQSSYLATQIVHLCNAHR-RVTHAARVFAQVRDPNLHLHNAMIKAYA 88
Query: 64 RIDSHKNGVLMYLDLLK-------SDVRRDNYTFPFLFKGFTRDIAGSLEK--------S 108
+ H++ V +Y+ +L+ D +T+PFL K A L K S
Sbjct: 89 QNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRS 148
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
VQN+LI Y G++ +A +F
Sbjct: 149 GCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY K G L +VF ++ PS W +I Y
Sbjct: 91 EQLHARSLKLPSHTNPHV--LTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 148
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ + VF
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 208
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 209 VATAAVDLYVKCGEMAKAREVF 230
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L ++H ++L + + Q +L + + + +VF ++ P++ L N MIK Y+
Sbjct: 30 LLRVHGHVVRLRISQSSYLATQIVHLCNAHR-RVTHAARVFAQVRDPNLHLHNAMIKAYA 88
Query: 64 RIDSHKNGVLMYLDLLK-------SDVRRDNYTFPFLFKGFTRDIAGSLEK--------S 108
+ H++ V +Y+ +L+ D +T+PFL K A L K S
Sbjct: 89 QNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRS 148
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
VQN+LI Y G++ +A +F
Sbjct: 149 GCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T+++ +Y K G KVF K+++ ++F WN MI + + +Y ++ V
Sbjct: 86 TKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVS 145
Query: 85 RDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D +TFP + K +I G K VFV NALI+ Y CG++ AR +
Sbjct: 146 LDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVL 205
Query: 137 FYMSCEDDDGLHE 149
F D GL E
Sbjct: 206 F------DSGLME 212
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIHS+ K G + + T + +Y K G L+ KVF ++ + +V W MI GY
Sbjct: 221 EQIHSRIAKAGYESDVNVS--TALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYV 278
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + + ++ L++S ++ + +F + T + ++++ + V
Sbjct: 279 QHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVL 338
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NALIS Y CG + AR +F
Sbjct: 339 VGNALISMYSRCGSLANARQVF 360
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++HSQ G T T + +Y K G + KVF ++ + +V WN I
Sbjct: 422 KELHSQIASTGWQTDLTVA--TALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCC 479
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R D K + + + DV D+ TF L T R I G + + ++
Sbjct: 480 RHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNH 539
Query: 116 VQNALISTYCLCGEVDMARGIFY 138
V NALIS Y CG + AR +FY
Sbjct: 540 VANALISMYGRCGNLADAREVFY 562
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 19 KPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77
KP + +Y K G ++ VF+ + V WN MI GY+ + ++
Sbjct: 132 KPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQ 191
Query: 78 LLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGE 129
+ + ++ + TF + F I + K+ V V ALI+ YC CG
Sbjct: 192 MQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGS 251
Query: 130 VDMARGIF 137
+++AR +F
Sbjct: 252 LELARKVF 259
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 15 GLLTKPHCPKQTRYLL----LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHK 69
GL+ K K R L +Y K G L+ VF + + V WN M+ Y+ D +
Sbjct: 628 GLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQ 687
Query: 70 NGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALI 121
+ + ++ + V D+ T+ R I L+++ + V N+LI
Sbjct: 688 DALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLI 747
Query: 122 STYCLCGEVDMARGIF 137
Y CG + A+ +F
Sbjct: 748 EMYSRCGCLCSAKQVF 763
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 21 HCPKQTRYLLLYEKGDLKYE-----CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
H P Y L +G LK E +FRK+ + +V WN MI GYS++ ++ V ++
Sbjct: 454 HEPNVVSYTTLI-RGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLF 512
Query: 76 LDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+ +L+ + TFP G R GS K VF+ N+L+S Y C
Sbjct: 513 VVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKC 572
Query: 128 GEVDMARGIF 137
G ++ + +F
Sbjct: 573 GSMEESLLVF 582
>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M KQ+H I+ GL + + +L+ K+ + WN +I
Sbjct: 276 MQYCKQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIA 335
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
GYS + ++ + + ++ ++++ D YTF L R++ + K+
Sbjct: 336 GYSNLGLGEDALKCFCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYAS 395
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V+VQN L+S Y CG +D ++ +F++ ED D
Sbjct: 396 SVYVQNGLVSMYARCGAIDDSKRVFWLM-EDHD 427
>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
Length = 824
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 82 QQIHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKC 141
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++ + DN+ P + K F R + G + K+ + VF
Sbjct: 142 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVF 201
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D AR +F
Sbjct: 202 VASSLADMYGKCGVLDDARKVF 223
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC---KVFRKITQPSVFLWNT 57
+ L+ +HS+ I L C L+ LK KVF +I + +V + N
Sbjct: 55 IRTLRTVHSRII----LEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINV 110
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSC 109
MI+ Y + GV ++ + +VR D+YTFP + K + R I GS K
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVG 170
Query: 110 IVMRVFVQNALISTYCLCGEVDMAR 134
+ +FV N L+S Y CG + AR
Sbjct: 171 LSSTLFVGNGLVSMYGKCGFLSEAR 195
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
K L Y +VF +I P++F++N+ I+G+S Y+ ++ + DN T+PFL
Sbjct: 60 KNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFL 119
Query: 94 FKGFTRDIAGSLEKSC----IVMR------VFVQNALISTYCLCGEVDMARGIF-YMSCE 142
K T+ GSL+ ++R V+VQN+L++ Y G++ A +F +SC
Sbjct: 120 VKACTQK--GSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCL 177
Query: 143 D 143
D
Sbjct: 178 D 178
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD+ K+F K+ + ++ W+ MI GY++ + +Y LL+S+ N T
Sbjct: 191 KSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYF-LLQSEGVHANETVMV 249
Query: 93 LFKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G+LE ++ + + + + AL+ Y CG +D A +F
Sbjct: 250 SVIASCAHL-GALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVF 303
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH+QT+K G +K + + LY K G++++ K F ++ + + WN+++ YS
Sbjct: 101 KTIHAQTLKFGFGSKGRLG--SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYS 158
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV------F 115
R S + + + L V + +T+ + R DI + C V+++ F
Sbjct: 159 RQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSF 218
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +LI Y CG + AR IF
Sbjct: 219 CEGSLIDMYSKCGSLVDARKIF 240
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+Q IK GL + + + + +Y K + ++ KVF + + ++ LWN M+ GY++
Sbjct: 371 VHAQAIKQGLNSNVYVG--SSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQN 428
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQ 117
+ ++ ++ D +T+ + R + + K +FV+
Sbjct: 429 GYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVE 488
Query: 118 NALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEY 167
N L+ Y CG ++ AR F ++ D+ + +I ++D E F +
Sbjct: 489 NTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMF 539
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H IK+G C + + +Y K G L K+F + P W MI GY
Sbjct: 202 KQVHCGVIKMGFEFNSFC--EGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYV 259
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTF 90
++ + + ++ D+ K + D F
Sbjct: 260 QVGLPEEALKVFEDMQKLGLVPDQVAF 286
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
++ L QI S I GL + PK L+++ +++ K+F +I +P+V WN M+
Sbjct: 79 LNHLHQIQSHIINHGLQFNDYITPKIITSFALFKR--MRHAHKLFDQIPEPNVSNWNAML 136
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
KGYS DSH+ ++++ ++ D+ + ++FP + K
Sbjct: 137 KGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIK 172
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTMI 59
+ QL Q+H+ +K L P Q +LL L + F + T P +F WNT+I
Sbjct: 13 LTQLLQLHALFLKTSLDHHPFFISQ--FLLQSSTISLPFAASFFHSLPTLPPLFAWNTLI 70
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD----IAGSLE----KSCIV 111
+ ++ + + + ++ L S + DN+T+PF+ K R + G+L K+
Sbjct: 71 RAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLHSLTLKTGFR 130
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V NAL++ Y C V AR +F
Sbjct: 131 SHRHVGNALLNMYAECYAVMSARMVF 156
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMI 59
+ Q QIH+Q I LGL P + L +L C ++ I QP F+ NT+I
Sbjct: 67 IKQFNQIHTQLIVLGLFQHPLAAGRYIKKLCNTYFNLLSHCVYLYDYIEQPDAFICNTII 126
Query: 60 KGYSRIDSHKNGVL-MYLD-LLKSDVRRDNYTFPFLFKGFTRDIAGSLEK-----SCIV- 111
+ + +++ G L Y D ++ V + YTFP L K DI GSL++ +C+V
Sbjct: 127 RCFVSLNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVK-VCADI-GSLKEGQKAHACVVK 184
Query: 112 ----MRVFVQNALISTYCLCGEVDMARGIF 137
+V+N+L+ Y CG V AR +F
Sbjct: 185 FGFEFDAYVRNSLLHMYSACGRVLDARLLF 214
>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
Length = 580
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+Q KLG + QT + Y K GD+ + KVF ++T+ +V WN+++ GY +I
Sbjct: 126 IHAQVYKLGFCRCVYV--QTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKI 183
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ------NA 119
+ + ++ ++ +D ++ + GF+ +G+++++C + + + NA
Sbjct: 184 GNLVDAQKLFDEM----PVKDAISWNSMLTGFSN--SGNMDRACCLFQQMGEKSSASWNA 237
Query: 120 LISTYCLCGEVDMARGIF 137
+I Y CG++ AR +F
Sbjct: 238 MIGGYVNCGDMKAARNLF 255
>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
Length = 730
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSR 64
++H QT+KL L + P + +Y + +L E K FR I + V WNT+I S
Sbjct: 230 ELHCQTVKLNLDSTPFIGNVI--ITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSH 287
Query: 65 IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
D H G+ ++ + +++VR D++TF + I L ++ + +
Sbjct: 288 CDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTSLYRDLG 347
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL++ Y CG + A IF
Sbjct: 348 VDNALVNMYAKCGCIGYAYDIF 369
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL---KYECKVFRKITQPSVFLWNTMI 59
Q+KQ+H+ I+ GL + T+ + + K D+ Y VF ++ P+ FLW MI
Sbjct: 57 QIKQVHAHIIRNGLSQCSYV--LTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK----GFTRDIAGSLEKSCIVMRVF 115
+GY+ Y + + V ++TF LFK D+ + I++ F
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174
Query: 116 -----VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDL 160
V N++I Y CG + AR +F MS D ELI A D+
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDM 225
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL-KYECKVFRKITQPSVFLWNTMI 59
+H +QIH++ +K G + +T+ ++ Y K D + ++F ++ +VF W ++
Sbjct: 95 LHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIV 154
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
R+ ++ +L ++++ ++ V DN+ P + K G + + G + K
Sbjct: 155 GLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFG 214
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV ++L+ Y CG ++ AR +F
Sbjct: 215 ACVFVSSSLVDMYGKCGVLEDARKVF 240
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF----------PFLFKGFT 98
QP++ W T+I G ++ +L + + ++ +R + P L+ G
Sbjct: 517 QPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYG-- 574
Query: 99 RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
R I G + + + V V +L+ Y CG +D A+ +F+M
Sbjct: 575 RAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHM 615
>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
Length = 734
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K DL+ +F ++ +VF W ++ S
Sbjct: 71 KQIHARVLKNGEFYSRNEYIETKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRS 130
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI ++ + ++++L++++ DN+ P + K F R + G + KS + VF
Sbjct: 131 RIGFSEDALTGFVEMLETEISPDNFVVPNVCKACGVLRWSRFGRSVHGFVMKSRLHDCVF 190
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y G +D AR +F
Sbjct: 191 VASSLADMYGKRGFLDDARKVF 212
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK----VFRKITQPSV------- 52
+ +IH++ I GL+ + TR +L + Y + VFR+ S
Sbjct: 31 VSKIHARLITTGLIKNSNL--STRIVLAFAASPRPYLAEFARLVFREYHVCSSSPGGEVE 88
Query: 53 --FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIA 102
FLWN +IK +S K +L++ +L++ V D ++ + K +R I
Sbjct: 89 DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G L K+ + +F+QN LI Y CG + AR IF
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIF 183
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ IK L P TR ++LY K + L VF ++ + +V W MI GYS
Sbjct: 30 QRVHAHMIKTCYL--PPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYS 87
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFL------FKGF--TRDIAGSLEKSCIVMRVF 115
+ + +++ +L+SD + +TF + F GF R I + K +F
Sbjct: 88 QRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIF 147
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y G + ARG+F
Sbjct: 148 VGSSLLDMYAKAGRIHEARGVF 169
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+HS ++ L + Q + +Y K G+L Y K+F + +V WN M+ GYS
Sbjct: 232 KQVHSHVLRCEL--PFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYS 289
Query: 64 RIDSHKNGV----LMYLDLLKSDVRRDNYTFPFLFKG 96
+ H G+ L L ++ V+ D+ TF + G
Sbjct: 290 K---HGKGIEVVKLFKLMREENKVKPDSVTFLAVLSG 323
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
+QIHS K + H + L +Y K +E + VF + + V +I GY+
Sbjct: 131 RQIHSHIFKRNY--ENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 188
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
++ + + ++ L + + + T+ L + + + + + + V
Sbjct: 189 QLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVV 248
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+QN+LI Y CG ++ AR IF
Sbjct: 249 LQNSLIDMYSKCGNLNYARKIF 270
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+ QIH+Q +K L PK L L VF + P+V L+N++I+
Sbjct: 36 SVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRH--LASAVNVFNHVPHPNVHLYNSIIRA 93
Query: 62 YSRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
++ SH + + + K+ + DN+T+PFL K T R I +EK
Sbjct: 94 HAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYG 153
Query: 113 RVFVQNALISTYCLCGE--VDMARGIFYMSCEDD 144
+FV N+LI +Y CG +D A +F E D
Sbjct: 154 DIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERD 187
>gi|414864686|tpg|DAA43243.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 484
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H+ ++ L PH +T L +Y G ++ K+F ++T+ +V WN MI Y
Sbjct: 32 RSVHAYVVRRHFL--PHVVLETALLEMYGNVGKVESSEKIFGQMTEKTVVTWNNMIAAYI 89
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF-------- 115
++ ++ + ++L+LL + D +T + F + GSL + C M +
Sbjct: 90 YMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFV--LLGSL-RQCRQMHSYIIKLGYGD 146
Query: 116 ---VQNALISTYCLCGEVDMARGIF 137
+ NA++ Y CG++ +R IF
Sbjct: 147 STLIMNAVMHMYARCGDIVASREIF 171
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+++ K IH Q IK G+ P + +Y K G Y CKVF +I + V W +I
Sbjct: 144 LNEGKAIHGQVIKSGI--NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALI 201
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
G+ V ++ ++ + V + +T+ K F + + K
Sbjct: 202 TGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDF 261
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+FV +AL+ Y CGE+ +A +F
Sbjct: 262 SDLFVGSALVDLYAKCGEMVLAERVF 287
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
KQ+H+Q +K L T + +Y K + + +F ++ + +F W ++ GY+
Sbjct: 552 KQVHAQIVKNSLDGNDFVG--TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 609
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMR----VF 115
+ + V ++ + + V+ + +T G +R D L I +F
Sbjct: 610 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 669
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +AL+ Y CG V+ A +F
Sbjct: 670 VASALVDMYAKCGCVEDAEVVF 691
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H++ IK+G + + + LY K G++ +VF + + + WN ++ G++
Sbjct: 249 KQVHAEAIKVGDFSDLFVG--SALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV----MRV----- 114
++ + + ++ + S++ +T + KG +G+L IV +R+
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCAN--SGNLRAGQIVHSLAIRIGCELD 364
Query: 115 -FVQNALISTYCLCGEVDMARGIF 137
F+ L+ Y CG A +F
Sbjct: 365 EFISCCLVDMYSKCGLAGDALKVF 388
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H+ + LG T+ + LY GDL F+ I + ++F WN+M+ Y
Sbjct: 68 KQLHALLLVLG--KAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYV 125
Query: 64 RIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR------VFV 116
R +++ + +LL S VR D YTFP + K +A + C V++ V+V
Sbjct: 126 RRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKA-CLSLADGEKMHCWVLKMGFEHDVYV 184
Query: 117 QNALISTYCLCGEVDMARGIF 137
+LI Y G V++A +F
Sbjct: 185 AASLIHLYSRFGAVEVAHKVF 205
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD--VRRDN 87
+Y K G + VF ++ V WNT+I GY++ + Y ++++ + +
Sbjct: 394 MYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIVPNQ 452
Query: 88 YTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
T+ + ++ I G L K+C+ + VFV LI Y CG ++ A +FY
Sbjct: 453 GTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFY 511
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYSR 64
+H +K G+ HCP L +Y K D + ++ F ++ + + W ++I Y R
Sbjct: 237 LHGFGVKAGV---GHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR 293
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMR-----VFV 116
+ V ++L + +S ++ D L G D G + IV R V +
Sbjct: 294 AGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLI 353
Query: 117 QNALISTYCLCGEVDMARGIFYM 139
NALIS Y C +VD+A +F M
Sbjct: 354 GNALISMYAKCKQVDIAATVFRM 376
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+ K+F + V W+ +I YS + K+ +L+Y +L V+ ++ T +
Sbjct: 469 GNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVI 528
Query: 95 KGFTRDIA---GSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
A G L S + + + AL+ Y CG++ +AR +F
Sbjct: 529 SSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMF 579
>gi|212722152|ref|NP_001132130.1| uncharacterized protein LOC100193547 [Zea mays]
gi|194693508|gb|ACF80838.1| unknown [Zea mays]
gi|413918286|gb|AFW58218.1| hypothetical protein ZEAMMB73_151558 [Zea mays]
Length = 552
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q H+Q +K+G ++ P + + Y + L+ ++F+ +T S W +I GY++
Sbjct: 172 QFHAQLVKVGYVSS--IPIGSSLISFYSRCSQLEIAHRIFQNMTAKSTVTWTALISGYAQ 229
Query: 65 IDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRDIAGSLEKSCIVMR--------VF 115
D+ L L++ V + N TF + T L KS ++ V
Sbjct: 230 -DNQVEPCLHLFALMRQSVCKPNDITFATILSVCTNHAFLVLGKSVQALQMRMGFGSYVH 288
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
V NALIS Y CG + AR +F ++C+D + LI
Sbjct: 289 VSNALISMYAKCGSIGEARAVFESITCKDLVSWNSLI 325
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSR 64
++H QT+KL L + P + +Y + +L E K FR I + V WNT+I S
Sbjct: 223 ELHCQTVKLNLDSTPFIGNVI--ITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSH 280
Query: 65 IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
D H G+ ++ + +++VR D++TF + I L ++ + +
Sbjct: 281 CDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLG 340
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL++ Y CG + A IF
Sbjct: 341 VGNALVNMYAKCGCIGYAYDIF 362
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL--YEKGDLKYECKVFRKITQPSVFLWNTMIK 60
L ++H + ++ L + P + LL + D+ Y KVF ++ QP+ +WN MI+
Sbjct: 33 NLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIR 92
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL---------FKG-FTRDIAGSL-EKSC 109
GY+ + + + ++ + +S V DNYT + +KG T D +L ++
Sbjct: 93 GYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIG 152
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV + LI+ Y V+ AR +F
Sbjct: 153 FASDLFVMSGLINFYGASKSVEDARKVF 180
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--- 98
K F+ + + WNT+I G+ + HK + M+ ++L V D T + +
Sbjct: 279 KTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLG 338
Query: 99 -----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ I + +QN+LI+ Y CG++ A IF
Sbjct: 339 DLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIF 382
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 21 HCPK--QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77
HC Q + +Y K GD+ +F + + + W M+ GY + + ++ D
Sbjct: 356 HCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDD 415
Query: 78 LLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGE 129
+ DV L + R+I +++ + +++++AL+ Y CG
Sbjct: 416 MKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGC 475
Query: 130 VDMARGIF 137
+D A IF
Sbjct: 476 IDAAAEIF 483
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+GD++ K+F +I V WN MI GY+ +K + ++ +++K +VR D T+ +
Sbjct: 143 RGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTV 202
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R + ++ + + NALI Y CGEV+ A G+F
Sbjct: 203 LSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y VF I +P+ +WNTMI+G++ + + +Y+ ++ + ++YTFPFL K
Sbjct: 14 LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73
Query: 97 ------FT--RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
FT + I G + K + ++V +LIS Y ++ A +F S D
Sbjct: 74 CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C +F+ ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 240 LYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 299
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 300 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVF 357
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI-TQPSVFLWNTMIKGY 62
+Q+H++ + GL TR + LY G + ++F ++ Q +VFLWN +I+ Y
Sbjct: 83 RQLHARLLVSGLGLDA--VLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAY 140
Query: 63 SRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
+R + + +Y ++L + DN+T+P + K G R++ + ++
Sbjct: 141 ARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAAD 200
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
VFV LI Y CG VD A +F
Sbjct: 201 VFVCAGLIDMYAKCGCVDEAWAVF 224
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSV---FLWNTM 58
+L Q+H+ IKLG P T++ D + Y + + V FL++T+
Sbjct: 22 KLAQLHTHIIKLGFQNNPLV--LTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTI 79
Query: 59 IKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSC 109
I+ Y+ K+ + Y +L L + + Y FPF+ K + + GSL K
Sbjct: 80 IRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFG 139
Query: 110 IVMRVFVQNALISTYCLC-GEVDMARGIF 137
+FVQN ++ YC C G ++ AR +F
Sbjct: 140 FDDDIFVQNTMVHMYCCCSGGMEFARKLF 168
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H +K G ++ G +++ K+F ++ + W MI GY+R
Sbjct: 129 KAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYAR 188
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
+ V ++ + + V D+ T + T + I +EK ++ V +
Sbjct: 189 LGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVEL 248
Query: 117 QNALISTYCLCGEVDMARGIF 137
NAL+ + CG+VD A G+F
Sbjct: 249 SNALVDMFAKCGDVDKALGLF 269
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCP-KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L +IH+ + G P K + + G L Y VF +I P WN+MI
Sbjct: 36 MRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMI 95
Query: 60 KGYSRIDS--HKNGVLMYLDLLK-SDVRRDNYTFPFLFK--------GFTRDIAGSLEKS 108
+G+S+ S ++ Y +L S R D YTF FL K G R++ G + +
Sbjct: 96 RGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRF 155
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF-------------YMSCEDDDGLHE 149
V + LI +Y G ++ A +F +SC GLHE
Sbjct: 156 GYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 209
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
KVF ++ + WN+MI Y + H+ + MY + S+V D +T L
Sbjct: 182 KVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAH-- 239
Query: 102 AGSLEKSC----------IVMRVFVQNALISTYCLCGEVDMARGIF 137
G+L +V +FV NALI Y CG + A IF
Sbjct: 240 VGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIF 285
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--- 99
+F KI++PSV WNT++ GY + + H++ V ++ + +V+ D T + +R
Sbjct: 372 MFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGI 431
Query: 100 -DIAGSLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
D+ + + + +FV + L+ Y CG++ +AR IF E D
Sbjct: 432 LDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERD 481
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLWNT 57
+++Q H+ +K GL H L+ + E + Y + +I P+ F N+
Sbjct: 24 EIQQAHAFMLKTGLF---HDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNS 80
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------GFT--RDIAGSLEKSC 109
+I+ Y+ + + + ++ ++L V D Y+F F+ K GF R I G KS
Sbjct: 81 VIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSD 140
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+V VFV+N LI+ Y G ++AR +
Sbjct: 141 LVTDVFVENTLINVYGRSGYFEIARKVL 168
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV--RRDNYTFPF 92
G +K +VF + V WN M+ Y+ + + N VL +++ D R D +T
Sbjct: 221 GLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCY-NEVLEVFNMMLDDSAERPDGFTLVN 279
Query: 93 LFKGFTRDIAGSL----------EKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+ GSL +K I + FV AL+ Y CG++D A +F + +
Sbjct: 280 VLSACAS--LGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSK 337
Query: 143 DD----DGLHELIRIKAVDDDLHELFPEYLVQMLALPD--TFMG 180
D + + + + + D E+F E + + P+ TF+G
Sbjct: 338 RDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFK-PNGITFIG 380
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
Q+HS +K GL +P L +Y K L ++F + Q + WN MI G
Sbjct: 262 AQLHSLAVKCGL--EPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCV 319
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ ++ D+ +S R D+ T L T +++ G + ++C+ M VF
Sbjct: 320 QNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVF 379
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +AL+ Y C +V MA+ ++
Sbjct: 380 LVSALVDIYFKCRDVRMAQNLY 401
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH ++ K C ++ + +Y K G L +F K++Q WN+MI +S
Sbjct: 464 QQIHGYVLRNAYERK--CYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFS 521
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYT----------FPFLFKGFTRDIAGSLEKSCIVMR 113
+ + + ++ + ++ +N T P ++ G ++I G K I
Sbjct: 522 QNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYG--KEIHGVTIKGPIKAD 579
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+F ++ALI Y CG +++A +F
Sbjct: 580 IFAESALIDMYAKCGNLELALRVF 603
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGY 62
LK+ H++ GL T++ ++Y + + VF I P FLWN MI+G+
Sbjct: 736 LKKTHAKIFAYGLQYDSRI--LTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGF 793
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMR------- 113
+ + + +Y +++ ++ D + FPF K AG L++ ++ +
Sbjct: 794 ATDGRFLSSLELYSKMMEKGLKPDKFAFPFALK----SCAGLSDLQRGKVIHQHLVCCGC 849
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV AL+ Y CG+++ AR +F
Sbjct: 850 SNDLFVDAALVDMYAKCGDIEAARLVF 876
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
+ Q+HSQ K G+L T+ LY K L+ KVF + P+V LWN+ ++
Sbjct: 19 SVSQLHSQVFKTGILHDTFFA--TKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRS 76
Query: 62 YSRIDSHKNGV-LMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSC-IV 111
Y R + + L +L + + DN+T P K + I G +K+ I
Sbjct: 77 YCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIG 136
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+FV +AL+ Y CG++ A +F
Sbjct: 137 SDMFVGSALVELYSKCGQMGEALKVF 162
>gi|224148148|ref|XP_002336601.1| predicted protein [Populus trichocarpa]
gi|222836288|gb|EEE74709.1| predicted protein [Populus trichocarpa]
Length = 223
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
K L Y +VF +I P++F++N+ I+G+S Y+ ++ + DN T+PF
Sbjct: 59 NKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPF 118
Query: 93 LFKGFTRDIAGSLEKSC----IVMR------VFVQNALISTYCLCGEVDMARGIF-YMSC 141
L K T+ GSL+ ++R V+VQN+L++ Y G++ A +F +SC
Sbjct: 119 LVKACTQK--GSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISC 176
Query: 142 ED 143
D
Sbjct: 177 LD 178
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSR 64
++H QT+KL L + P + +Y + +L E K FR I + V WNT+I S
Sbjct: 223 ELHCQTVKLNLDSTPFIGNVI--ITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSH 280
Query: 65 IDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
D H G+ ++ + +++VR D++TF + I L ++ + +
Sbjct: 281 CDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLG 340
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL++ Y CG + A IF
Sbjct: 341 VGNALVNMYAKCGCIGYAYDIF 362
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 29 LLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
L +Y K G+ K+F ++ + +V WN++I GY+++ + + ++ + SD+R D
Sbjct: 61 LYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDK 120
Query: 88 YTFPFLFK--GFTRDI-AGSLEKSCIVMR-----VFVQNALISTYCLCGEVDMARGIFYM 139
+TF G T D+ G L + I + V + N+LI YC CG +D AR +F
Sbjct: 121 FTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFES 180
Query: 140 SCE-DDDGLHELI----RIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEV 185
+ E D + LI RI + +D++ L + L L L +G L+
Sbjct: 181 ADELDSVSWNSLIAGYVRIGS-NDEMLRLLVKMLRHGLNLNSYALGSALKA 230
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +H +KLGL T L Y K GDL+ K+F+ + P+V ++N MI G+
Sbjct: 243 KMLHGCAVKLGL--DLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 300
Query: 64 RIDSHKN-----GVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
++++ + + ++ ++ ++ +TF + K + + I + K +
Sbjct: 301 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNL 360
Query: 111 VMRVFVQNALISTYCLCGEVD 131
F+ NAL+ Y L G ++
Sbjct: 361 QSDEFIGNALVELYSLSGSIE 381
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + + VF + WN++I GY RI S+ + + + +L+ + ++Y
Sbjct: 169 GRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSAL 228
Query: 95 KGFTRDIAGSLE-----KSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
K + + S+E C V + V V AL+ TY G+++ A IF
Sbjct: 229 KACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIF 281
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH+Q K L + + LY G ++ K F + V W ++I G+
Sbjct: 349 KQIHAQIFKYNLQSDEFIGNA--LVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHV 406
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + G+ ++ +LL S + D +T + I K+ I
Sbjct: 407 QNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTI 466
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+QN+ I Y CG++D A F
Sbjct: 467 IQNSQICMYAKCGDIDSANMTF 488
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKG 61
Q +Q+H+ I +L + + T+ Y L + +V F I + FLWN MI+G
Sbjct: 77 QGQQLHAHMISFSIL-ENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRG 135
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIAGSLEKSCIVMR---- 113
Y+ +++Y ++L R DN+T+PF+ K +I + +V
Sbjct: 136 YASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESD 195
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++V N+L++ Y G++ AR +F E D
Sbjct: 196 IYVGNSLLAMYAKFGDMGTARMVFDRMAERD 226
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HS+ + GL + + L +Y K GD+ VF ++ + + WNTMI GY+
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSL--LAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYA 238
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAG-SLEKSCIVMRV 114
+ L++ + K+ + D T L + I G ++ S
Sbjct: 239 KNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNK 298
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F N+LI YC C + AR +F
Sbjct: 299 FFTNSLIEMYCNCNCMVDARRLF 321
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
D+ +F KI++PSV WNT++ GY + + H++ + ++ + +V+ D T +
Sbjct: 89 DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 148
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
F R + + + + +FV + L+ Y CG++ +AR IF E D
Sbjct: 149 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 205
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS +++ L + + +Y K G + +F K+T+ V WN++I G +
Sbjct: 160 RQVHSASVRFLLHNDMFVA--SGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLT 217
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+K + + ++ + ++ + +R I + K V+
Sbjct: 218 IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVY 277
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKA---VDDDLHELFPEYLVQM 171
V +ALI Y CG +D AR F M ++ +E+I A + D ELF EY++
Sbjct: 278 VGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELF-EYMLTT 336
Query: 172 LALPDT 177
PD
Sbjct: 337 EQKPDA 342
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+HS I+LG + ++ + LY K GDL+ CKVF + + WN +I G S+
Sbjct: 285 QLHSVAIRLGFEFDQY--SESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQ 342
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRVFVQ----- 117
K V M++ L +S + D++T + G ++ SL+ V +V V
Sbjct: 343 GGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNI 402
Query: 118 ---NALISTYCLCGEVDMARGIF 137
N+LI Y CG +D+A +F
Sbjct: 403 LMLNSLIDMYGKCGRMDLAMKVF 425
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 48 TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SL 105
PS F WN +I+ Y+R++ + + +Y+ +L++ + D YT P +FK + A L
Sbjct: 225 NHPSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAGILPDCYTLPIVFKALSLAYAFDLGL 284
Query: 106 EKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
+ + +R+ + ++ LIS Y G+++ A +F
Sbjct: 285 QLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVF 322
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +++HS+ + GL T +T L LY K LK C+VF + + V WN M+
Sbjct: 435 LAQGQKVHSRIVSSGLETD--MTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMM 492
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDI-AGSLEKSCIVMR--- 113
GY D + +Y + ++ V +N TF K + +DI GS ++ I +
Sbjct: 493 VGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFE 552
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
V AL++ Y CG+++ A+ +F
Sbjct: 553 TDVVTDTALLNMYAACGDLEAAKRVF 578
Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 21 HCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79
H P Q + +Y K GDL+ KVF ++ + V W+TMI Y++ H + +Y L+
Sbjct: 253 HVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIY-RLM 311
Query: 80 KSD--VRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGE 129
+S+ V + TF + T + G L + V V +AL+ Y CG
Sbjct: 312 ESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCGS 371
Query: 130 VDMARGIF 137
++ A+ F
Sbjct: 372 LEDAKKAF 379
Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVF--RKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
GDL+ +VF R+ + V W MI Y++ + + +Y +L +++ ++ T+
Sbjct: 569 GDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTS 628
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + R I LE + V VQN+L+S Y CG + A F
Sbjct: 629 VLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMYARCGSLRDAWSCF 681
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCP-KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L +IH+ + G P K + + G L Y VF +I P WN+MI
Sbjct: 18 MRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMI 77
Query: 60 KGYSRIDS--HKNGVLMYLDLLK-SDVRRDNYTFPFLFK--------GFTRDIAGSLEKS 108
+G+S+ S ++ Y +L S R D YTF FL K G R++ G + +
Sbjct: 78 RGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRF 137
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF-------------YMSCEDDDGLHE 149
V + LI +Y G ++ A +F +SC GLHE
Sbjct: 138 GYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 191
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
KVF ++ + WN+MI Y + H+ + MY + S+V D +T L
Sbjct: 164 KVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAH-- 221
Query: 102 AGSLEKSC----------IVMRVFVQNALISTYCLCGEVDMARGIF 137
G+L +V +FV NALI Y CG + A IF
Sbjct: 222 VGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIF 267
>gi|449453244|ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Cucumis sativus]
Length = 735
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HSQ IKLG + T + +Y G+ + VF+ + + + WN +I Y
Sbjct: 311 QQVHSQAIKLGFESFTLVGNST--ITMYTSCGEFQAANAVFQMLIEKDLISWNAIISSYV 368
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFL-----FKGFTRDIAGSLEKSCIVMRVFVQN 118
+ + K+ VL +L + ++ + D +TF L F + + K+ +++ + + N
Sbjct: 369 QGNFGKSAVLAFLQMQRTGIGPDEFTFGSLLGVSEFIEIVEMVHAYVYKNGLILIIEILN 428
Query: 119 ALISTYCLCGEVDMARGIF 137
AL+S Y C +V + +F
Sbjct: 429 ALVSAYAKCRKVKQSLQVF 447
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-----------TQ 49
+H + QIHS+ I G + P TR +L + K + R + Q
Sbjct: 83 LHDVNQIHSRLITTGFINNPSL--TTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQ 140
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI 101
+ FLWN +IK +S + ++ +L++ V D ++F + K +R I
Sbjct: 141 DNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQI 200
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G L I VF+QN L+ Y CG + +AR +F
Sbjct: 201 HGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLF 236
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 47 ITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE 106
+ Q ++ WN+MI GY+R + G+ + +L + +RD ++ + G + G +E
Sbjct: 272 MEQKNLISWNSMISGYARSEE---GLRVAWELFEEMPKRDLISWNSMIDGCVK--CGKME 326
Query: 107 KSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ + V ++ Y GE+D+ARG+F
Sbjct: 327 NAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLF 363
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIA 102
S F WN++I GY+ + +++ + +Y + + V DN+TFP + K +
Sbjct: 121 SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVH 180
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +S VFV NAL+ Y CG + AR +F
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVF 215
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----- 96
KVF +I + WN+M+ GY+R H + ++ +++ D+ L
Sbjct: 213 KVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMK 272
Query: 97 FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F I G + + + + + N+LI Y CG+++ A+ +F
Sbjct: 273 FKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLF 313
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y VF I +P++ +WNTM++G++ + + MY+ ++ ++Y+FPFL K
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 97 FT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
R I + K + +V +LIS Y G ++ AR +F S D
Sbjct: 74 CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+GD + KVF +IT+ V WN MI GY ++ + ++ ++++++VR D T +
Sbjct: 143 RGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSV 202
Query: 94 FKGFTRDIAGSLEKSCIV--------------MRVFVQNALISTYCLCGEVDMARGIFY- 138
+ +GS+E V + + NALI Y CG+V+ A G+F
Sbjct: 203 VSACAQ--SGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEG 260
Query: 139 MSCEDDDGLHELI 151
+SC+D + LI
Sbjct: 261 LSCKDVVSWNTLI 273
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K GD++ +F ++ V WNT+I GY+ + +K +L++ ++L+S ++ T
Sbjct: 244 LYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVT 303
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 304 LLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVF 361
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+HS I+LG + ++ + LY K GDL+ CKVF + + WN +I G S+
Sbjct: 280 QLHSVAIRLGFEFDQY--SESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQ 337
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRVFVQ----- 117
K V M++ L +S + D++T + G ++ SL+ V +V V
Sbjct: 338 GGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNI 397
Query: 118 ---NALISTYCLCGEVDMARGIF 137
N+LI Y CG +D+A +F
Sbjct: 398 LMLNSLIDMYGKCGRMDLAMKVF 420
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 48 TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SL 105
PS F WN +I+ Y+R++ + + +Y+D+L++ + D YT P +FK + A L
Sbjct: 220 NHPSSFYWNIIIRSYTRLEVPRIALFVYIDMLRAGILPDCYTLPIVFKALSLAYAFDLGL 279
Query: 106 EKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
+ + +R+ + ++ LIS Y G+++ A +F
Sbjct: 280 QLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVF 317
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 18/152 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ LKQIH+Q I GL + +C + + + K +L Y K+F I+ P++FL+NT+I
Sbjct: 162 FNTLKQIHTQIITTGLSFQTYC--LSHLIKISSKFNLPYAFKIFNYISNPTIFLYNTLIS 219
Query: 61 GYSRIDSHKNGVLMYLDLL-----KSDVRRDNYTFPFLFKGFTRDIA----GSLEKSCIV 111
+++N + + L +++ +++TFP LFK + + G L + ++
Sbjct: 220 SLIN-QTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVL 278
Query: 112 MRV------FVQNALISTYCLCGEVDMARGIF 137
+ FVQ +L++ Y G++ ++R IF
Sbjct: 279 KFLQPPFDNFVQASLLNFYAKYGKMCVSRYIF 310
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-- 99
KVF +I +P+ +WN M +GYS+ +SHK+ ++++ + DV + +TFP + K +
Sbjct: 6 KVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKIN 65
Query: 100 DIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
+ E C V++ FV LI Y G + A +F
Sbjct: 66 ALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVF 109
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIA 102
S F WN++I GY+ + +++ + +Y + + V DN+TFP + K +
Sbjct: 121 SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVH 180
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +S VFV NAL+ Y CG + AR +F
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVF 215
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----- 96
KVF +I + WN+M+ GY+R H + ++ +++ D+ L
Sbjct: 213 KVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMK 272
Query: 97 FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F I G + + + + + N+LI Y CG+++ A+ +F
Sbjct: 273 FKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLF 313
>gi|255578953|ref|XP_002530329.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530133|gb|EEF32045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 342
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ + K++ KI ++ WNT ++ + N + +YL +L+S + +TFPF K
Sbjct: 1 MSSKTKLYHKIQSSTLLKWNTQLRESANKSHFTNALSIYLQMLRSGSSPNAFTFPFALKS 60
Query: 97 -------FTRD-IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FT + + + K+ ++ FVQ ALIS Y C +D AR +F
Sbjct: 61 CAALSLPFTGEQLHSHVFKTGCLLEPFVQTALISMYGRCALIDNARKVF 109
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 17/144 (11%)
Query: 6 QIHSQTIKLGL---LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
IH +K GL ++ +C L +Y K G++ K+F I + WN MI G
Sbjct: 123 SIHGFCVKFGLVMDMSVGNC-----LLTMYVKCGEVGSARKLFNDIPGKGLITWNAMING 177
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIVMR 113
YS+ + + +Y ++ S V D T + + R+I +
Sbjct: 178 YSQNGLATDVLELYREMELSGVSPDAVTLAGVLSSCAHLGAQSVGREIEERMNVCGFASN 237
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
F+ NALI+ Y CG + AR IF
Sbjct: 238 PFLNNALINLYARCGNLVRARDIF 261
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRK-ITQPSVFLWNTMIKGY 62
+Q+HSQ + GL P+ QT L LY K + + VF + ++ W+ MI GY
Sbjct: 148 RQLHSQAFRRGLEPSPYV--QTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGY 205
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
SR+ + ++ ++ +DV D T + R + +++ I + +
Sbjct: 206 SRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDL 265
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLAL 174
+ ALI Y CG ++ A+G+F E D + + L E+ + +ML L
Sbjct: 266 ELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLEL 325
Query: 175 ---PD--TFMG 180
P+ TF+G
Sbjct: 326 KVRPNNVTFIG 336
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL-KYECKVFRKITQPSVFLWNTMI 59
+H +QIH++ +K G + +T+ ++ Y K D + ++F ++ +VF W ++
Sbjct: 1190 LHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIV 1249
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
R+ ++ +L ++++ ++ V DN+ P + K G + + G + K
Sbjct: 1250 GLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFG 1309
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV ++L+ Y CG ++ AR +F
Sbjct: 1310 ACVFVSSSLVDMYGKCGVLEDARKVF 1335
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF----------PFLFKGFT 98
QP++ W T+I G ++ +L + + ++ +R + P L+ G
Sbjct: 1612 QPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYG-- 1669
Query: 99 RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
R I G + + + V V +L+ Y CG +D A+ +F+M
Sbjct: 1670 RAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHM 1710
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTM 58
LKQIH + G+ ++ + R LLL G + Y KVF I+ P +F+ N M
Sbjct: 12 SLKQIHGNLVVKGITSRL---QPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVM 68
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIV---- 111
++GY+ + ++Y + + ++ D++TF +L + G AG +V
Sbjct: 69 VRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGY 128
Query: 112 -MRVFVQNALISTYCLCGEVDMA 133
FV+NALI+ + CG++ +A
Sbjct: 129 FKDAFVRNALINMHAKCGDLLVA 151
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
Q H IK G H + + LY K EC KVF +I P + LWNTMI G+S
Sbjct: 264 QFHGMMIKSGFHGNSHVG--SGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFS 321
Query: 64 RI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM---------R 113
+ D ++G+ + ++ + D+ +F + + + S+ K + R
Sbjct: 322 QYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNR 381
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V NAL++ Y CG V AR +F
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVF 405
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H + + GL P T+ + LY G + + ++F + + +VFLWN +I+ Y+
Sbjct: 82 RQLHGRLLVSGL--GPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYA 139
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R H+ + +Y ++ V DN+T+P K R++ + + +F
Sbjct: 140 RDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMF 199
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V L+ Y CG VD AR +F
Sbjct: 200 VCAGLVDMYAKCGCVDDARAVF 221
>gi|218194994|gb|EEC77421.1| hypothetical protein OsI_16207 [Oryza sativa Indica Group]
Length = 683
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYSR 64
+H +K G+ HCP L +Y K D + ++ F ++ + + W ++I Y R
Sbjct: 237 LHGFGVKAGV---GHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR 293
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMR-----VFV 116
+ V ++L + +S ++ D L G D G + IV R V +
Sbjct: 294 AGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLI 353
Query: 117 QNALISTYCLCGEVDMARGIFYM 139
NALIS Y C +VD+A +F M
Sbjct: 354 GNALISMYAKCKQVDIAAMVFRM 376
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 24/231 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTM 58
+L+QIH+Q IK LL H +R + G L Y VF +I P+ F++ +
Sbjct: 21 ELRQIHAQMIKTNLLN--HQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFAL 78
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDN--YTFPFLFKGF--------TRDIAGSLEKS 108
IKG+S + +++Y +L ++ P + K R + G + K+
Sbjct: 79 IKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKT 138
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIR--IKAVDDDL-HELF 164
+ FV N+++ Y GE+++AR +F M D + +I +KA + +L ELF
Sbjct: 139 HLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELF 198
Query: 165 PEY----LVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGR 211
E LV A+ D + E L + + P + + G +EG+
Sbjct: 199 DEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGK 249
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 44 FRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDI 101
F I +P VF+ N++I+ +S + +Y + ++ + +NYTFPF+ K +D+
Sbjct: 67 FTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDL 126
Query: 102 AGS------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + KS ++VQN L+ Y CG++ + + +F
Sbjct: 127 VGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVF 168
>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
Length = 788
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH++ +K G + +T+ L+ Y K D ++ +F ++ +VF W +I
Sbjct: 50 QQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKC 109
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + + +++++++ V DNY P + K F R + G L K+ + VF
Sbjct: 110 RIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVF 169
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG ++ AR +F
Sbjct: 170 VASSLADMYGKCGVLNDARKVF 191
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK- 95
+ Y K+F ++ + VFLWNT+I+GY+ + + +Y ++ + + DNYTFPF+ +
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 96 -GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGE 129
+ E C +++ VFVQ++L++ Y GE
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGE 178
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 18/145 (12%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
++QIH+Q I + L+KP+ +LL + + D Y +F ++ P+ + +N MI+G
Sbjct: 48 MQQIHAQMI-INSLSKPN------FLLPRIIDLKDFAYASLLFTQMPNPNDYAFNVMIRG 100
Query: 62 YSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVMRVF-- 115
+ ++ + +Y + ++ +N+TFPFLF +A G + S ++ F
Sbjct: 101 LTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGFNN 160
Query: 116 ---VQNALISTYCLCGEVDMARGIF 137
+ ++LI+ Y C ++D AR +F
Sbjct: 161 DSHINHSLITMYAKCSKLDSARKVF 185
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H + HS +K+G H + +Y K L KVF +I + + WN+MI
Sbjct: 143 LHCGQIAHSLVLKMGFNNDSHINHS--LITMYAKCSKLDSARKVFDEILERDIVSWNSMI 200
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA-GSLEKSCIV----- 111
GY+++ + V +++++ + T + G D+A G ++ I
Sbjct: 201 SGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKME 260
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + +ALI Y CG++ AR +F E D
Sbjct: 261 LNSYTASALIDMYGKCGDLMSARRVFDNMAEKD 293
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL +VF + + + WN MI GY++ + + ++ + ++ + + T
Sbjct: 272 MYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEIT 331
Query: 90 FPFLFKGFTRDIAGSLEKSCIVMR--------VFVQNALISTYCLCGEVDMARGIF 137
+ A L K + V+V +AL+ Y CG +D A +F
Sbjct: 332 MVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRVF 387
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 44 FRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDI 101
F I +P VF+ N++I+ +S + +Y + ++ + +NYTFPF+ K +D+
Sbjct: 67 FTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDL 126
Query: 102 AGS------LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + KS ++VQN L+ Y CG++ + + +F
Sbjct: 127 VGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVF 168
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI-TQPSVFLWNTMIKGY 62
+Q+H++ + G T TR + LY G + +VF ++ Q +VFLWN +I+ Y
Sbjct: 88 RQLHARLLVSG--TGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAY 145
Query: 63 SRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR------ 113
+R + + +Y +L ++ DN+T+P + K D++ E VMR
Sbjct: 146 ARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATD 205
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
VFV LI Y CG +D A +F
Sbjct: 206 VFVCTGLIDMYAKCGCMDEAWAVF 229
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH +K + P Q L +Y K G LK KVF + + +V W ++I GYS
Sbjct: 83 RKIHDHMLKSK--SHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYS 140
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ N + Y +L+S V D +TF + K G R + + KS +
Sbjct: 141 QNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHII 200
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIR-IKAVDDDLHEL--FPEYLVQM 171
QNALIS Y + A +F M+ D +I + +L L F E L Q
Sbjct: 201 AQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQG 260
Query: 172 LALPDTFM 179
+ LP+ F+
Sbjct: 261 VYLPNEFI 268
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K H Q + +Y K ++ + VF ++ + W +MI G+S
Sbjct: 184 RQLHAHVLKSEF--GAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFS 241
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
++ + + ++L V N + F +F + R + G K + V
Sbjct: 242 QLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDV 301
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
F +L Y CG + AR +FY
Sbjct: 302 FAGCSLCDMYAKCGLLSCARVVFY 325
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL--LYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q+H +K GL +C L LY K G LK K+F + P V W+++I G
Sbjct: 489 NQVHCYALKTGL----NCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILG 544
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
Y++ + + ++ + + DV+ ++ TF
Sbjct: 545 YAQFGYGEEALKLFKTMRRLDVKPNHVTF 573
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 3 QLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLK---YECKVFRKITQPSVFLWNTM 58
QLKQIH+Q LLT H P LY+ DLK Y F I P+ + +N M
Sbjct: 47 QLKQIHAQ-----LLTNSIHKPNS----FLYKIADLKDFAYASVFFSNILDPTEYSFNVM 97
Query: 59 IKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVMRV 114
I+G S + + L + +K ++ +N T+PFLF + +A G + ++ R
Sbjct: 98 IRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRG 157
Query: 115 F-----VQNALISTYCLCGEVDMARGIF 137
V ++LI+ Y CG++ AR +F
Sbjct: 158 LDEDGHVSHSLITMYARCGKMGDARKVF 185
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++F + + WN MI GY++ + + ++ D+ S D T +
Sbjct: 277 GDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGIL 336
Query: 95 KGFTRDIAGSLEKSCIVMR--------VFVQNALISTYCLCGEVDMARGIFY-MSCEDDD 145
A L K + V+V AL+ Y CG +D A +FY M +++
Sbjct: 337 SACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEV 396
Query: 146 GLHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEVIPK 188
+ +I A E LAL + M EG V P
Sbjct: 397 SWNAMISALAFHGQAQE--------ALALFKSMMNEGGTVSPN 431
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 8 HSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
H I+ GL H T Y + GD + KVF +I+Q + WN+MI GYS++
Sbjct: 150 HCSVIRRGLDEDGHVSHSLITMYARCGKMGDAR---KVFDEISQKDLVSWNSMISGYSKM 206
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA-GSLEKSCIV-----MRVFVQ 117
V ++ +++++ + + + + G D+ G+ + +V + F+
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMG 266
Query: 118 NALISTYCLCGEVDMARGIF 137
+ALI Y CG++ AR IF
Sbjct: 267 SALIHMYGKCGDLVSARRIF 286
>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
Length = 630
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ K+IHSQ + + P + + Y K GDL+ ++F++I +V W M+
Sbjct: 318 LRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAML 377
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIV 111
Y+ + + +Y ++ ++ D+ + G R + + S +
Sbjct: 378 TAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFM 437
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+++ +QNALI+ Y CG ++ AR +F
Sbjct: 438 LKIQIQNALINMYTRCGSLEEARRVF 463
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD----LKYECKVFRKITQPSVFLWN 56
+ LKQIH+ + L P+ + D Y C +F+ + Q ++F++N
Sbjct: 20 VQHLKQIHAHLLMTYLPQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMYN 79
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT------RDIAGSLEKSCI 110
+MI+GY K +L YLDL+ + YTFP L K + I + I
Sbjct: 80 SMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVI 139
Query: 111 VMR----VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V+ FV +AL+ Y L ++ +AR +F S D
Sbjct: 140 VLGYENDAFVVSALVEFYSLF-DLKVARVLFDKSSGKD 176
>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 658
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H+ ++ L PH +T L +Y G ++ K+F ++T+ +V WN MI Y
Sbjct: 345 RSVHAYVVRRHFL--PHVVLETALLEMYGNVGKVESSEKIFGQMTEKTVVTWNNMIAAYI 402
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF-------- 115
++ ++ + ++L+LL + D +T + F + GSL + C M +
Sbjct: 403 YMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFV--LLGSL-RQCRQMHSYIIKLGYGD 459
Query: 116 ---VQNALISTYCLCGEVDMARGIF 137
+ NA++ Y CG++ +R IF
Sbjct: 460 STLIMNAVMHMYARCGDIVASREIF 484
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G + F ++ P FL N MI+G++ + + Y +L + R D +TFP +
Sbjct: 69 AGRMDEAADAFAGVSSPGAFLHNVMIRGFADAGLPLDALAAYRAMLAASARPDRFTFPVV 128
Query: 94 FKGFTRDIA---GSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
K TR A G + ++ ++ N+L++ Y G V A +F
Sbjct: 129 VKCCTRAGALGEGRAAHAAVIKLGLGADMYTANSLVALYAKLGLVGDAERVF 180
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
D+ +F KI++PSV WNT++ GY + + H++ + ++ + +V+ D T +
Sbjct: 73 DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 132
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
F R + + + + +FV + L+ Y CG++ +AR IF E D
Sbjct: 133 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 189
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS +++ L + + +Y K G + +F K+T+ V WN++I G +
Sbjct: 144 RQVHSASVRFLLHNDMFVA--SGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLT 201
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+K + + ++ + ++ + +R I + K V+
Sbjct: 202 IHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVY 261
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKA---VDDDLHELFPEYLVQM 171
V +ALI Y CG +D AR F M ++ +E+I A + D ELF EY++
Sbjct: 262 VGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELF-EYMLTT 320
Query: 172 LALPDT 177
PD
Sbjct: 321 EQKPDA 326
>gi|125528323|gb|EAY76437.1| hypothetical protein OsI_04370 [Oryza sativa Indica Group]
Length = 456
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
++FR + + +V WN MI G S+ ++ V ++L++ + VR + TFP L
Sbjct: 128 RLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAG 187
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131
G R I S K + VF N+L+S Y CG +D
Sbjct: 188 ALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLD 225
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK- 95
+ Y K+F ++ + VFLWNT+I+GY+ + + +Y ++ + + DNYTFPF+ +
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 96 -GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGE 129
+ E C +++ VFVQ++L++ Y GE
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGE 178
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH IKLG+ P + LY K G+++ +F + ++ WN MI Y
Sbjct: 249 KLIHGYGIKLGV--DPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYE 306
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ ++ N V ++ + V D T + R + +++ + + V
Sbjct: 307 QNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVS 366
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ NALI Y CG +D+AR +F
Sbjct: 367 ITNALIDMYAKCGNIDLAREVF 388
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYSR 64
+H +K G+ HCP L +Y K D + ++ F ++ + + W ++I Y R
Sbjct: 237 LHGFGVKAGV---GHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR 293
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMR-----VFV 116
+ V ++L + +S ++ D L G D G + IV R V +
Sbjct: 294 AGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLI 353
Query: 117 QNALISTYCLCGEVDMARGIFYM 139
NALIS Y C +VD+A +F M
Sbjct: 354 GNALISMYAKCKQVDIAATVFRM 376
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+ K+F + V W+ +I YS + K+ +L+Y +L V+ ++ T +
Sbjct: 469 GNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVI 528
Query: 95 KGFTRDIA---GSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
A G L S + + + AL+ Y CG++ +AR +F
Sbjct: 529 SSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMF 579
>gi|194707160|gb|ACF87664.1| unknown [Zea mays]
gi|413920054|gb|AFW59986.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 553
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q H+Q +K+G ++ + Y + L+ +VF+ +T S W +I GY++
Sbjct: 172 QFHAQLVKVGYVSS--ISTGNSLISFYSRCSQLEIAHRVFQNMTAKSTVTWTALISGYAQ 229
Query: 65 IDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRDIAGSLEKSCIVMR--------VF 115
D+ L L++ V + N TF +F T L KS ++ V
Sbjct: 230 -DNQVEPCLHLFALMRHSVCKPNDVTFATIFSVCTNHAFLVLGKSVQALQMRMGFDSYVH 288
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
V NALIS Y CG + AR +F + C+D + LI
Sbjct: 289 VSNALISMYAKCGSIGEARAVFESIRCKDLVSWNSLI 325
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLF 94
D+ Y ++F +++ P+VFL+N++I+ Y+ + + + +Y LL+ D +TFPF+F
Sbjct: 57 DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD-- 144
K + + G L K V +NALI Y ++ A +F E D
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176
Query: 145 ------DGLHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEV 185
G L ++K H + + +V A+ + G G V
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD---VRRDNYTFPF 92
DL+ K F ++ + ++ WN +I GYSR H+ + +Y D++ ++ D TF
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T R+I S VQNALI+ Y CG ++ AR +F
Sbjct: 169 ALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVF 221
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q ++I ++T+ G + Q + +Y K G L+ KVF ++ V WNTMI
Sbjct: 179 ISQGREIEARTVASGYASDS--IVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
GY++ + + ++ + +D + + TF L T R I + +
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE 296
Query: 112 MRVFVQNALISTYCLC-GEVDMARGIF 137
+ + N L++ Y C ++ AR +F
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVF 323
>gi|359495958|ref|XP_003635122.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g47460-like [Vitis vinifera]
gi|297744381|emb|CBI37355.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS ++ G + T L Y + + LK VF +I +PSV WN++I GY+
Sbjct: 99 QQLHSYILRSGFGSNVFVS--TALLNFYIRIESLKDAHNVFVEIPEPSVVSWNSLISGYA 156
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + ++L L +SD+ D ++F I + KS + V
Sbjct: 157 HAGQFRAALGLFLKLERSDICADAFSFTAALATCGHLSLLRLGESIHSKIVKSGLEWSVV 216
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD-DGLHELIRIKAVDDDLHELFPEYLVQMLAL 174
V N L+ Y CG V A +F + D + +I A + L + F YL QM
Sbjct: 217 VANCLVDMYGKCGYVQEAIRVFDSIIDKDIISWNTVISASARNRKLEQAFS-YLRQM-PE 274
Query: 175 PDTF 178
PDT
Sbjct: 275 PDTI 278
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 3 QLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLK---YECKVFRKITQPSVFLWNTM 58
QLKQIH+Q LLT H P LY+ DLK Y F I P+ + +N M
Sbjct: 47 QLKQIHAQ-----LLTNSIHKPNS----FLYKIADLKDFAYASVFFSNILDPTEYSFNVM 97
Query: 59 IKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVMRV 114
I+G S + + L + +K ++ +N T+PFLF + +A G + ++ R
Sbjct: 98 IRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRG 157
Query: 115 F-----VQNALISTYCLCGEVDMARGIF 137
V ++LI+ Y CG++ AR +F
Sbjct: 158 LDEDGHVSHSLITMYARCGKMGDARKVF 185
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++F + + WN MI GY++ + + ++ D+ S D T +
Sbjct: 277 GDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGIL 336
Query: 95 KGFTRDIAGSLEKSCIVMR--------VFVQNALISTYCLCGEVDMARGIFY-MSCEDDD 145
A L K + V+V AL+ Y CG +D A +FY M +++
Sbjct: 337 SACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEV 396
Query: 146 GLHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEVIPK 188
+ +I A E LAL + M EG V P
Sbjct: 397 SWNAMISALAFHGQAQE--------ALALFKSMMNEGGTVSPN 431
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 8 HSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
H I+ GL H T Y + GD + KVF +I+Q + WN+MI GYS++
Sbjct: 150 HCSVIRRGLDEDGHVSHSLITMYARCGKMGDAR---KVFDEISQKDLVSWNSMISGYSKM 206
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA-GSLEKSCIV-----MRVFVQ 117
V ++ +++++ + + + + G D+ G+ + +V + F+
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMG 266
Query: 118 NALISTYCLCGEVDMARGIF 137
+ALI Y CG++ AR IF
Sbjct: 267 SALIHMYGKCGDLVSARRIF 286
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD- 100
KVF +++ +V +N MI+ Y + +G+L++ +++ R DNYT+P + K +
Sbjct: 74 KVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSE 133
Query: 101 -------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I G + K + +FV N LI+ Y CG + AR +F
Sbjct: 134 NLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVF 177
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----- 96
K+F + + ++ WN MI+ Y + V +YL + K V D TF +
Sbjct: 243 KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLS 302
Query: 97 ---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R I +EK + + ++N+LI Y CG +D A+ +F
Sbjct: 303 ALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVF 346
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH+Q ++ G + P+ Q+ + Y K + + KVF +IT+ ++ W+ M+ GY+
Sbjct: 112 KQIHAQILRSGFSSSPYV--QSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYA 169
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R+ ++M+ ++ + D + + + + ++K I + +
Sbjct: 170 RLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLE 229
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI---RIKAVDDDLHELFPEYLVQM 171
+ ALI+ Y CG ++ AR IF M +D +I I + +D +F + +
Sbjct: 230 LNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSR-MEEA 288
Query: 172 LALPD--TFMG 180
A P+ TF+G
Sbjct: 289 QAKPNHVTFIG 299
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----------GDLKYECKVFRKITQP 50
M L+QIH++ + H P + L K G+ Y K+F +I P
Sbjct: 1 MQILRQIHARILT-------HVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNP 53
Query: 51 SVFLWNTMIKG--YSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT--------R 99
+F +N++I+G Y++I S K + ++ D++ N +T F+ K + +
Sbjct: 54 GIFAYNSVIRGCLYTKIPS-KEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGK 112
Query: 100 DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I + +S +VQ++L++ Y C E+ +AR +F
Sbjct: 113 QIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVF 150
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL ++FR + + V WN++I GY+++ + + ++ D+ K+D+ T
Sbjct: 265 GDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDMWKNDIEPTELTVVSAL 324
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDD 145
R I L+ I +V NAL+ Y CG + +AR +F MS +D
Sbjct: 325 GACAEVGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCGNLKLARQVFDSMSIKDVT 384
Query: 146 GLHELIRIKAVDDDLHELFPEYLVQMLALPD--TFMG 180
+ +I +V H+ + + + PD TF+G
Sbjct: 385 CWNTMIVGLSVHGHSHDALKLFDLMNIE-PDHVTFLG 420
>gi|115438849|ref|NP_001043704.1| Os01g0646000 [Oryza sativa Japonica Group]
gi|113533235|dbj|BAF05618.1| Os01g0646000 [Oryza sativa Japonica Group]
Length = 252
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL--YEKGDLKYECKVFRKITQPSVFLWNTMIK 60
L ++H + ++ L + + LL + D++Y KVF + QP+ F+WN MI+
Sbjct: 32 HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIR 91
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
GYS ++ ++ + ++ ++ + V DNYT
Sbjct: 92 GYSSCEAPRDALAVFREMRRRGVSPDNYT 120
>gi|115440947|ref|NP_001044753.1| Os01g0839400 [Oryza sativa Japonica Group]
gi|15623829|dbj|BAB67888.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|21104616|dbj|BAB93208.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534284|dbj|BAF06667.1| Os01g0839400 [Oryza sativa Japonica Group]
gi|125572581|gb|EAZ14096.1| hypothetical protein OsJ_04019 [Oryza sativa Japonica Group]
Length = 456
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
++FR + + +V WN MI G S+ ++ V ++L++ + VR + TFP L
Sbjct: 128 RLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAG 187
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131
G R I S K + VF N+L+S Y CG +D
Sbjct: 188 ALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLD 225
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 21 HCPKQTRYLLLYEKGDLKYE-----CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
H P Y L +G LK E +FRK+ + +V WN MI GYS++ ++ V ++
Sbjct: 173 HEPNVVSYTTLI-RGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLF 231
Query: 76 LDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+ +L+ + TFP G R GS K VF+ N+L+S Y C
Sbjct: 232 VVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKC 291
Query: 128 GEVDMARGIF 137
G ++ + +F
Sbjct: 292 GSMEESLLVF 301
>gi|297804658|ref|XP_002870213.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316049|gb|EFH46472.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H+ T+KLG + Y+ L E + KVF ++ +P+V W ++I GY+
Sbjct: 44 LHALTLKLGFASNTFTVNHLVNSYVKLKEINTAR---KVFDEMCEPNVVSWTSVISGYND 100
Query: 65 IDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + M+ ++ + V + YTF +FK + ++I LE S + +
Sbjct: 101 MGQPQTALSMFQEMHEDRSVPPNEYTFASVFKACSALAESRIGKNIHARLEVSGLRRNIV 160
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y C +V+MAR +F
Sbjct: 161 VSSSLVDMYGKCNDVEMARRVF 182
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+HQ KQ+H I GL P T+ + +Y GDL +F K++QP+VF W ++
Sbjct: 39 LHQGKQLHQHIILCGLDHHPF--MLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAIL 96
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIV---- 111
YSR V Y ++ V D Y FP +F+ + ++ + K ++
Sbjct: 97 GFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCE 156
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V N+LI Y G+V R +F
Sbjct: 157 FDLQVCNSLIDMYSKSGDVGSGRRVF 182
>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 20/180 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL---KYECKVFRKITQPSVFLWNTMI 59
Q KQ+H+ TI LG + H + + Y L + V I P WN +I
Sbjct: 59 QGKQLHAHTISLGF--ENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNP--LPWNLLI 114
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKS-CI 110
Y H + Y +++ VR DN+T+P + K F R++ S+ +
Sbjct: 115 SSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGH 174
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD----DGLHELIRIKAVDDDLHELFPE 166
++V N+L+S Y GE+D AR +F E D +G+ + + + ELF E
Sbjct: 175 RWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEE 234
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL++ +F+ I S+ WN+M+ GY+ +D + ++ ++L S + + T +
Sbjct: 329 DLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILP 388
Query: 96 GFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
R ++ E C +MR + + N+L+ Y G+V A+ +F
Sbjct: 389 HCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVF 439
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
+ + KVF I P+VF+WN +IKG + + Y ++ D R + +T+P LFK
Sbjct: 82 NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFK 140
Query: 96 GFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ R I G + K I V +++A I Y G ++ AR +FY S E D
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFY-SGESD 196
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G+L K+F ++++ W++M+ GY +K + ++ + + + R +
Sbjct: 238 LAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFIL 297
Query: 91 PFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + R + L+++ I + + AL+ Y CG +DM +F
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVF 352
>gi|413944102|gb|AFW76751.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 248
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q K +H + I + P T+ ++ Y GD+ +VF + SV W M+ G
Sbjct: 29 QGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSG 88
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
Y++ + + ++ +L+S R + +TF + T I K
Sbjct: 89 YAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGD 148
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+FVQ+AL+ + CG V AR +F
Sbjct: 149 MFVQSALMDMHLRCGSVGDARRLF 172
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLY------EKGDLKYECKVFRKITQPSVFLWN 56
QLK+IH+ +KL L Q+ +L+ G + Y +F+++ P++F +N
Sbjct: 25 QLKKIHAHVVKLSL-------SQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYN 77
Query: 57 TMIKGYSRIDSHKNGVLMYLDLL---KSDVRRDNYTFPFLFKGFT--------RDIAGSL 105
+I+ Y+ H + + +++ +L + V D +TFPF+ K T + G +
Sbjct: 78 AIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLV 137
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K +NALI Y G++ A +F
Sbjct: 138 YKFGADFHCITENALIDMYTKFGDLTNACKVF 169
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 46/181 (25%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWN-------- 56
Q+H K G HC + + +Y K GDL CKVF +++ V WN
Sbjct: 132 QVHGLVYKFG--ADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVK 189
Query: 57 -----------------------TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
TMI GY R+ + + + ++ ++ + D + +
Sbjct: 190 LGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAV 249
Query: 94 FKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
+ G+LE K+ + + + NALI Y CG +D A +F E
Sbjct: 250 LPACAQ--LGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEK 307
Query: 144 D 144
D
Sbjct: 308 D 308
>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
Length = 730
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ K+IHSQ + + P + + Y K GDL+ ++F++I +V W M+
Sbjct: 318 LRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAML 377
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
Y+ + + +Y ++ ++ D+ + G R + + S +
Sbjct: 378 TAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFM 437
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+++ +QNALI+ Y CG ++ AR +F
Sbjct: 438 LKIQIQNALINMYARCGSLEEARRVF 463
>gi|224088075|ref|XP_002308315.1| predicted protein [Populus trichocarpa]
gi|222854291|gb|EEE91838.1| predicted protein [Populus trichocarpa]
Length = 545
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL-KYECKVFRKITQPSVFLWNTMIKGYS 63
+QIHS+ IK+G + +T+ + Y K L + F +++ +VF W +I
Sbjct: 30 QQIHSRIIKIGDSLATNEYLETKLFIFYAKCHLFEVANNFFSRLSVKNVFSWAAIIGLNC 89
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R+ ++ ++ +++ + + DN+ P + K F R + G + K VF
Sbjct: 90 RMGFYREALMGLCEMIDTGILADNFVVPNILKACAALQWISFGRGVHGYVVKMGFDRCVF 149
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y CG ++ AR +F
Sbjct: 150 VSSSLVDAYGKCGILEDARKVF 171
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++H+Q IK + P T L Y ++G++ KVF++I + + W+ MI GY++
Sbjct: 27 EMHAQAIKRNYVKSPSVG--TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQ 84
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE---------KSCIVMRVF 115
I + V +++ + K ++ + YTF + AG + KS +
Sbjct: 85 IGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALC 144
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V +AL++ Y G+++ A +F E D
Sbjct: 145 VSSALLTMYSKRGDIESAFEVFKRQRERD 173
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ Q KQ+H+ +IK C + ++GD++ +VF++ + + WN++I
Sbjct: 124 VEQGKQLHAWSIK-SRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIIS 182
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GY++ + + ++ ++ + ++ D TF
Sbjct: 183 GYAQHGYGRKALEVFEEMQRQNLEMDGVTF 212
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL--YEKGDLKYECKVFRKITQPSVFLWNTMIK 60
L ++H + ++ L + + LL + D++Y KVF + QP+ F+WN MI+
Sbjct: 32 HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIR 91
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GYS ++ ++ + ++ ++ + V DNYT
Sbjct: 92 GYSSCEAPRDALAVFREMRRRGVSPDNYTM 121
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GD+ +VF+ +T+ V W M+ GY + ++ ++ ++V
Sbjct: 367 MYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMA 426
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L + R+I +E+ + + +++AL+ Y CG +D A IF
Sbjct: 427 LVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIF 482
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDI 101
P+ F WN +I+ Y+R+++H + +Y+ + ++ V D+YT P + K GF R +
Sbjct: 92 PAPFQWNNIIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQV 151
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + + ++ IS Y GE A +F
Sbjct: 152 HSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKVF 187
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS I+ GL +C ++ ++ +Y K G+ + KVF + + WN +I G S
Sbjct: 149 RQVHSVAIRHGLELNEYC--ESGFISVYSKAGEFQNAHKVFEQNRFRKLGSWNAIIGGLS 206
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMR------ 113
+ K V M++++ K D T + D+A L K C+
Sbjct: 207 QGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHK-CVYQAKTSERS 265
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
N+L+ Y CG +D+A +F
Sbjct: 266 DTLTLNSLVDMYGKCGRMDLAYRVF 290
>gi|297845310|ref|XP_002890536.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336378|gb|EFH66795.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 687
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 5 KQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WNTMI 59
+QIH+ I GL P PK + Y +L E + IT+ S L WN +I
Sbjct: 102 QQIHAHCISSGLEFDPVLVPKLVTF---YSAFNLLDEAQT---ITENSDILHPLPWNVLI 155
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y R + V +Y ++ ++ D +T+P + K + R + GS+E S
Sbjct: 156 DSYVRNKRFEESVSVYKRMMSKGIQPDEFTYPSVLKACGALLDFAYGRVVHGSVEVSSHR 215
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++V NALIS Y G+VD+AR +F E D
Sbjct: 216 CSLYVCNALISMYKRFGKVDVARKLFDRMSERD 248
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
DL++ VF++I S+ WN++I GY+ + + + ++L S + T +
Sbjct: 356 SDLRHAFIVFQQIEANSLSTWNSIISGYAHNERSEETSFLLKEMLLSGFHPNYITLASIL 415
Query: 95 KGFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
R ++ E C ++R + + N+L+ Y GE+ A+ +F
Sbjct: 416 PLCARVANLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVF 467
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL--YEKGDLKYECKVFRKITQPSVFLWNTMIK 60
L ++H + ++ L + + LL + D++Y KVF + QP+ F+WN MI+
Sbjct: 32 HLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIR 91
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GYS ++ ++ + ++ ++ + V DNYT
Sbjct: 92 GYSSCEAPRDALAVFREMRRRGVSPDNYTM 121
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GD+ +VF+ +T+ V W M+ GY + ++ ++ ++V
Sbjct: 367 MYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMA 426
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L + R+I +E+ + + +++AL+ Y CG +D A IF
Sbjct: 427 LVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIF 482
>gi|255546351|ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546691|gb|EEF48189.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+ S I+LGL + +C ++ ++ Y K GD+K K+F + + + WN +I G S
Sbjct: 143 KQLQSVAIRLGLESNEYC--ESGFISFYSKSGDIKNAYKMFEENPERKLGSWNAIIGGLS 200
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRVF---- 115
+ K + +++++ K D+ T + ++A L K VF
Sbjct: 201 QGGHAKEAIEIFIEMRKCGFVPDDVTMVSVISACGSLGDLNLAIQLHKYVFHANVFGRTN 260
Query: 116 --VQNALISTYCLCGEVDMARGIF 137
V N+LI Y CG +D+AR +F
Sbjct: 261 ILVMNSLIDMYGKCGRMDLARRVF 284
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIAGSLEKS 108
F WN +I+ Y+R+D+ + +Y+ + ++ V D+YT P + K F+ +I L+
Sbjct: 89 FHWNNIIRSYTRLDAPVKALQVYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSV 148
Query: 109 CIVMRV----FVQNALISTYCLCGEVDMARGIF 137
I + + + ++ IS Y G++ A +F
Sbjct: 149 AIRLGLESNEYCESGFISFYSKSGDIKNAYKMF 181
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q+KQ+H+Q G++ + Y+ K DL +F K+ + W+ MI G+
Sbjct: 18 QIKQVHAQVTTTGIIHDLIVANKLLYMCAKHK-DLVTAHLLFNKMEERDPVSWSVMIGGF 76
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
+ ++ + +L+++ + DN++ PF+ K R I ++ K+ + +
Sbjct: 77 VKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDN 136
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV + L+ Y CG +D A+ +F
Sbjct: 137 FVCSTLVDMYAKCGMIDNAKQLF 159
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H+ ++ L PH +T L +Y K G ++ K+F +IT ++ WN MI Y
Sbjct: 343 RSVHAYVVRRHFL--PHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYM 400
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF-------- 115
++ ++ + ++L+LL + D +T + F + GS+ + C M +
Sbjct: 401 YMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFV--LLGSI-RQCKQMHSYIVKLGYGD 457
Query: 116 ---VQNALISTYCLCGEVDMARGIF 137
+ NA++ Y CG + +R IF
Sbjct: 458 STLIMNAVMHMYARCGNIVASREIF 482
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G + F +T+P FL N MI+G++ D + + Y +L + R D +TFP +
Sbjct: 67 AGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVV 126
Query: 94 FK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K G R ++ K + V+ N+L++ Y G V A +F
Sbjct: 127 LKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
+ + KVF I P+VF+WN +IKG + + Y ++ D R + +T+P LFK
Sbjct: 82 NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFK 140
Query: 96 GFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ R I G + K I V +++A I Y G ++ AR +FY S E D
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFY-SGESD 196
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G+L K+F ++++ W++M+ GY +K + ++ + + + R +
Sbjct: 238 LAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFIL 297
Query: 91 PFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + R + L+++ I + + AL+ Y CG +DM +F
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVF 352
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H+Q IK + + + + + Y K G+ Y ++ ++ W MI GY+
Sbjct: 408 KELHAQVIKNSI--QENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDAVAWTAMISGYN 465
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + D+L V + YT+ K R I G + K+ VF
Sbjct: 466 SVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFSNVF 525
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG+VD AR +F
Sbjct: 526 VGSSLIDMYMRCGKVDEARRVF 547
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 26 TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85
T Y +E D + KVF ++ + +V W M+ GY + +H V ++LD++ S R
Sbjct: 129 TSYARFHEIPDAR---KVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDMIASGERG 185
Query: 86 DNYTFPFLFKGFTRDIAGSLEKS--CIVMR-----VFVQNALISTYCLCGEVDMARGIF 137
++ +F L K G L + C V++ V + +A+ Y CG+VD A +F
Sbjct: 186 NSLSFVCLLKSCGEQCDGKLGQQVHCCVVKGGWSNVIMDSAVAHFYAQCGDVDGASMMF 244
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y +F +I P++F++N +I+ +S Y +LKS + DN TFPFL K
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 97 FTR---DIAGSLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIF 137
+ + G S IV V+V+N+L+ Y CG + A IF
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIF 175
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ ++GL+ K + +T+ + +Y K G L KVF ++ + ++F W+ MI S
Sbjct: 104 RELHT---RIGLVRKVNPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACS 160
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIV-----MRVF 115
R + V ++ D+++ V D++ P + K G RDI G L S ++ +
Sbjct: 161 RDLKWEEVVELFYDMMQHGVLPDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLH 220
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N++++ Y CGE+ A IF
Sbjct: 221 VNNSILAVYAKCGEMSCAEKIF 242
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTM 58
+L+QIH+Q IK LL H +R + G L Y VF +I P+ F++ +
Sbjct: 21 ELRQIHAQMIKTNLLN--HQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFAL 78
Query: 59 IKGYSRIDSHKNGVLMYLDLLK--SDVRRDNYTFPFLFKGF--------TRDIAGSLEKS 108
IKG+S + +++Y +L + ++ P + K R + G + K+
Sbjct: 79 IKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKT 138
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ FV N+++ Y GE+++AR +F
Sbjct: 139 HLWFDPFVGNSMVRMYIDFGEIELARRVF 167
>gi|115469032|ref|NP_001058115.1| Os06g0625800 [Oryza sativa Japonica Group]
gi|51535726|dbj|BAD37743.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113596155|dbj|BAF20029.1| Os06g0625800 [Oryza sativa Japonica Group]
Length = 433
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH++ + +G + T+ L+ Y K G+L KVF + Q SV WN MI G +
Sbjct: 55 KRIHARMVSVGFGGGVYIV--TKLLIFYVKIGELGVARKVFDGMPQRSVVAWNAMISGCA 112
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCI-VMRV 114
R + V M+ + +R D +TF + R A G + KS + V
Sbjct: 113 RGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGGGNV 172
Query: 115 FVQNALISTYCLC 127
FV +AL+ Y C
Sbjct: 173 FVDSALVDMYLKC 185
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++IH QT+K G T T + + G L Y ++F +TQ V W T+I +
Sbjct: 189 REIHCQTLKKGF-TAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQ 247
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
I +N V + + ++DV + +TF + G + + + + +V + V
Sbjct: 248 IGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSV 307
Query: 117 QNALISTYCLCGEVDMARGIF 137
N++++ Y C ++D+A +F
Sbjct: 308 ANSIMAMYSKCWQLDLASTVF 328
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + C VF+++ +V W +I G R +K + + D+ V D YTF
Sbjct: 117 GKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSAL 176
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + R+I K FV N L + Y CG++D +F
Sbjct: 177 KACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLF 227
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQ+H+ + +GL + + Q+ + +Y K G +K K+F + ++ W MI
Sbjct: 387 LEQGKQLHAHVLCVGL--EQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMI 444
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GY+ + + ++ L K +R D+ TF
Sbjct: 445 NGYAEHGYSQEAIDLFKKLPKVGLRPDSVTF 475
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 38/237 (16%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFR----------KITQPSVFLWNT 57
H++ IK G++ + TR +L + Y + R ++ P +LWN
Sbjct: 2 HARLIKTGIIKNSNLT--TRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDP--YLWNA 57
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSC 109
MIK +S + +L++ +L+ V D ++ + K +R I G L+K+
Sbjct: 58 MIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTG 117
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD--------DGLHELIRIKAVDDDLH 161
+ +F+QN LI Y CG + AR IF + D DG + I++ +L
Sbjct: 118 LWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESA-SELF 176
Query: 162 ELFPEYLVQMLALPDTFMG-----EGLEVIPK--SQAPREETPRVGNLEEGTPQEGR 211
+L P + +++ G EG+++ K ++ P ++ ++ +G + GR
Sbjct: 177 DLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGR 233
>gi|147773503|emb|CAN66782.1| hypothetical protein VITISV_013509 [Vitis vinifera]
Length = 625
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS ++ G + T L Y + + LK VF +I +PSV WN++I GY+
Sbjct: 123 QQLHSYILRSGFGSNVFVS--TALLNFYIRIESLKDAHNVFVEIPEPSVVSWNSLISGYA 180
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + ++L L +SD+ D ++F I + KS + V
Sbjct: 181 HAGQFRAALGLFLKLERSDICADAFSFTAALATCGHLSLLRLGESIHSKIVKSGLEWSVV 240
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD-DGLHELIRIKAVDDDLHELFPEYLVQMLAL 174
V N L+ Y CG V A +F + D + +I A + L + F YL QM
Sbjct: 241 VANCLVDMYGKCGYVQEAIRVFDSIIDKDIISWNTVISASARNRKLEQAFS-YLRQM-PE 298
Query: 175 PDT 177
PDT
Sbjct: 299 PDT 301
>gi|255587727|ref|XP_002534373.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525413|gb|EEF28011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 207
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ LK H+ TI G + + Y K+F K+ Q VFLWNT+I+
Sbjct: 39 LSHLKLTHALTITTGFHNSLLLSTKLITSASALSSSMDYARKLFDKMPQRDVFLWNTLIR 98
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
GY+ + ++ V++Y + DNYTFPF+ +
Sbjct: 99 GYADLGPYQEAVMLYKTMHHDGFLPDNYTFPFVVR 133
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRK-ITQPSVFLWNTMIKGY 62
+Q+HSQ + GL P+ QT L LY K + + VF + ++ W+ MI GY
Sbjct: 151 RQLHSQAFRRGLEPSPYV--QTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGY 208
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
SR+ + ++ ++ +DV D T + R + +++ I + +
Sbjct: 209 SRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDL 268
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLAL 174
+ ALI Y CG ++ A+G+F E D + + L E+ + +ML L
Sbjct: 269 ELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLEL 328
Query: 175 ---PD--TFMG 180
P+ TF+G
Sbjct: 329 KVRPNNVTFIG 339
>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
Length = 584
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+ ++ LG + QT ++LY K G L K+F I SV WN MI GY +
Sbjct: 131 VHAHSVLLGFGSDRFV--QTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQN 188
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIV----MRVFVQ 117
+ + +Y ++ + V D+ TF + D+ +E+ + + VF+
Sbjct: 189 GLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLG 248
Query: 118 NALISTYCLCGEVDMARGIF 137
+AL++ Y CG V AR F
Sbjct: 249 SALVNMYARCGLVSKARDWF 268
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
Q+H I G P + +Y K G L K+F + +V WN MI G+
Sbjct: 93 NQLHGLVISCGFHFDPLVANA--LVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFV 150
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ L++ +++ + V D+ TF T ++I G + + I + VF
Sbjct: 151 QNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVF 210
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
+++ALI Y C +V MA IF S D
Sbjct: 211 LKSALIDIYFKCRDVGMACKIFKQSTNVD 239
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H+ +K GL + H + + +Y K G L ++FR++ + WN +I S
Sbjct: 295 KELHANILKHGLDERRHV--GSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCS 352
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYT----------FPFLFKGFTRDIAGSLEKSCIVMR 113
+ + + ++ + + + D + P L G + I + K
Sbjct: 353 QNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHG--KAIHSFMIKGAFDSE 410
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
VF ++ALI Y CG + +AR +F M E ++
Sbjct: 411 VFAESALIDMYGKCGNLSVARCVFDMMREKNE 442
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M + K++H+ I GL + + ++ L L + +F + PS +L+NTM +
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFR 60
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR----- 113
Y+ + + +L++ + + D YTFPFL K + + E C ++
Sbjct: 61 VYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGG 120
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
VFV+N+LI Y +D AR +F
Sbjct: 121 HVFVENSLIHLYGSNSRMDSARRVF 145
>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 562
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q K +H + I + P T+ ++ Y GD+ +VF + SV W M+ G
Sbjct: 29 QGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSG 88
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
Y++ + + ++ +L+S R + +TF + T I K
Sbjct: 89 YAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGD 148
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+FVQ+AL+ + CG V AR +F
Sbjct: 149 MFVQSALMDMHLRCGSVGDARRLF 172
>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Brachypodium distachyon]
Length = 674
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H K+G + P + +Y K G L +VF + SV WNTM+ YS
Sbjct: 221 QELHCCVAKMGACEDQYLP--CALVDMYSKCGRLDEARRVFDGMPWRSVVAWNTMLAAYS 278
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ V +Y D+ + V D +TF + F+R I SL +S + M +
Sbjct: 279 LHGCAEEAVDLYHDMCECGVVFDQFTFSTMLGVFSRLGLLEHAKQIHASLIQSGLHMDIV 338
Query: 116 VQNALISTYCLCGEVDMARGIF 137
AL+ YC G ++ AR +F
Sbjct: 339 GNTALVDLYCKWGRMEDARHVF 360
>gi|222635914|gb|EEE66046.1| hypothetical protein OsJ_22034 [Oryza sativa Japonica Group]
Length = 425
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH++ + +G + T+ L+ Y K G+L KVF + Q SV WN MI G +
Sbjct: 47 KRIHARMVSVGFGGGVYIV--TKLLIFYVKIGELGVARKVFDGMPQRSVVAWNAMISGCA 104
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCI-VMRV 114
R + V M+ + +R D +TF + R A G + KS + V
Sbjct: 105 RGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGGGNV 164
Query: 115 FVQNALISTYCLC 127
FV +AL+ Y C
Sbjct: 165 FVDSALVDMYLKC 177
>gi|226503379|ref|NP_001142111.1| uncharacterized protein LOC100274275 [Zea mays]
gi|195615590|gb|ACG29625.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 553
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q H+Q +K+G ++ + Y + L+ +VF+ +T S W +I GY++
Sbjct: 172 QFHAQLVKVGYVSS--ISTGNSLISFYSRCSQLEIAHRVFQNMTAKSTVTWTALISGYAQ 229
Query: 65 IDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRDIAGSLEKSCIVMR--------VF 115
D+ L L++ V + N TF +F T L KS ++ V
Sbjct: 230 -DNQVEPCLHLFALMRHSVCKPNDVTFATIFSVCTNHAFLVLGKSVQALQMRMGFDSYVH 288
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
V NALIS Y CG + AR +F + C+D LI
Sbjct: 289 VSNALISMYAKCGSIGEARAVFESIRCKDLVSWSSLI 325
>gi|414880466|tpg|DAA57597.1| TPA: hypothetical protein ZEAMMB73_848759 [Zea mays]
Length = 664
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 5 KQIHSQTIKLGLLTKPHC-PKQTRYLLLY--EKGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q+H +K GLL HC P L+ + G KVF ++T SV WN +I
Sbjct: 63 AQLHPHILKRGLL---HCEPYSGTSLVGFFGRSGRFDEALKVFGEMTVRSVVTWNCLIYS 119
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMRVFVQNA 119
+ + + V + +L++S + +F + F + G + K + V NA
Sbjct: 120 FVQFGHSRAAVSWFRELVRSGDGLSDGSFVAILPSFGLPEQVHGVMNKIGMGSLSAVANA 179
Query: 120 LISTYCLCGEVDMARGIF 137
L+++YC CG +D+A +F
Sbjct: 180 LLNSYCTCGAIDVAEKLF 197
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ----TRYLLLYE---KGDLKYECKVFRKITQPSVF 53
+ +LK+ H+Q +K L H Q TR L + G Y VF I P +
Sbjct: 31 LRELKKTHTQILKSPTL---HTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNPDLR 87
Query: 54 LWNTMIKGYSRIDSHKN-----GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS 108
+N MI+ Y ++S + +++Y + D+ + TFPFL KG T+ + G+ ++
Sbjct: 88 AYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQA 147
Query: 109 C--------IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V+V N+LIS Y G + AR +F
Sbjct: 148 IHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVF 184
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY--LDLLKSD-VRRDNYTF 90
G L +FRK+ ++ WN++I G ++ S K + ++ + +L D V+ D T
Sbjct: 205 NGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITI 264
Query: 91 PFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + G L ++ I V + AL++ Y CG+V A IF
Sbjct: 265 ASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIF 319
>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 818
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 5 KQIHSQTIKLGLLTKP--HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+Q+HS ++LGL++ C Y L + +++ KVF+ + + +V W +I GY
Sbjct: 266 QQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGY 325
Query: 63 SRIDSHKNGVL-MYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
+ +N V+ ++ ++L +R ++ T+ L K R I + K+ I
Sbjct: 326 VQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHV 385
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V NAL+S Y G ++ AR F
Sbjct: 386 NVVGNALVSMYAESGCMEEARKAF 409
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK------ 95
VF K+ + ++F WN ++ Y+R + ++ + ++ +L+ ++ + DN+T P + K
Sbjct: 56 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 115
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + I G K +V VFV NALI+ Y CG V+ A +F
Sbjct: 116 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVF 159
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ LK++H + + GL + ++ Y + G L +VF + +V WN ++
Sbjct: 323 LQSLKELHGYSWRHGLQSNELVANA--FIAAYTRCGALCSSERVFDLMDTKTVSSWNALL 380
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
GY++ + + +YL + S + D +T L +R +I G ++ +
Sbjct: 381 CGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA 440
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ F+ +L+S Y CG+ A+ +F
Sbjct: 441 VDPFIGISLLSLYICCGKPFAAQVLF 466
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
L ++ G++ VF+ + + +V WN MI GY ++ S+ ++++ D+ K+ V+ D T
Sbjct: 544 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 603
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + ++I + +S + + V AL+ Y CG VD A IF
Sbjct: 604 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIF 659
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH + ++ G + + +Y K G L+ +VF +I + +V WN+MI GYS
Sbjct: 419 KEIHMELVRSGFALDGFV--SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 476
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRVF 115
K+ + ++ + + +R T + +R I G + ++ + +F
Sbjct: 477 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIF 536
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG + A +F
Sbjct: 537 VNSSLIDLYFKCGNIGSAENVF 558
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
K +H+ IK G + + +Y K ++ + K+F ++ + V WN +I Y
Sbjct: 318 KMVHTHVIKSGFAMD--VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYY 375
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + + ++ ++ S + D+ T + R +I L +S + F
Sbjct: 376 QDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGF 435
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +AL+ Y CG ++MA+ +F
Sbjct: 436 VSSALVDMYGKCGCLEMAKEVF 457
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRID 66
HS +K GL H + + +Y + G+L +VF +I++ + WN+MI GYSR+
Sbjct: 149 HSGVLKSGLCADGHV--RHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMG 206
Query: 67 SHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQN 118
+ V ++ ++ + D T + G I G + ++ + + FV +
Sbjct: 207 YAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGS 266
Query: 119 ALISTYCLCGEVDMARGIF 137
ALI Y CG++ AR +F
Sbjct: 267 ALIGMYGKCGDLSSARRVF 285
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK---YECKVFRKITQPSVFLWNTMI 59
L+QIH+Q I + + KP+ LL+ DLK +F +I P+ + +N MI
Sbjct: 46 SLQQIHTQMI-INAIHKPN-------FLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMI 97
Query: 60 KGYSRIDSHKN-GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCI 110
+G + N + Y + +R +N+T+PF+F + + KS +
Sbjct: 98 RGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGL 157
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V+++LI+ Y CGE+ AR +F E D
Sbjct: 158 CADGHVRHSLITMYSRCGELGCARRVFDEISEKD 191
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL +VF ++ + V WN MI GY++ ++++ + +S V D T
Sbjct: 271 MYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKIT 330
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ F + + + + ++V ALI Y CG +D A +F
Sbjct: 331 LVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVF 386
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+H+L Q+H+ + G+ Y L G + Y ++F +I P F++N++I+
Sbjct: 25 VHRLNQLHAHLVVHGV-DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIR 83
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
Y + + + +++ + + +T PFL K R A G + K V
Sbjct: 84 AYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG 143
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+VFV NAL+ +Y G + +R F
Sbjct: 144 QVFVGNALLHSYASAGSLGDSRRFF 168
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS 67
H +KLG + + + G L + F ++ +V WN+MI GY++ +
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSY-ASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGN 191
Query: 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV----------MRVFVQ 117
+ ++ + + + D +T L F G+LE +V + + +
Sbjct: 192 TREACSLFEGMRRQGLLADEFTLVSLL--FACSAEGNLEFGKLVHSHLLVRGCRIDLILA 249
Query: 118 NALISTYCLCGEVDMARGIFYM 139
NAL+ Y CG++ MA F M
Sbjct: 250 NALVDMYGKCGDLLMAHTCFDM 271
>gi|449459042|ref|XP_004147255.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g47460-like [Cucumis sativus]
Length = 582
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++Y ++ K+ P+ WN ++ GY D + + + DVR D +TF +
Sbjct: 285 GDIEYAVEILSKMDSPNSSSWNAVLTGYVDRDETWEALSFFTKMHSCDVRMDQFTFSSIL 344
Query: 95 KGFT--RDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
G + L C + + V +ALIS Y CG V+ A IF
Sbjct: 345 SGVAGLSALKWGLAIHCCITKCGLDTSTVVGSALISMYSKCGHVNYAEMIF 395
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 14/183 (7%)
Query: 6 QIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+HS ++ G + + + E D + K+F ++ QPS+ WN++I GY
Sbjct: 94 QLHSYILRSGFASNVFVGTAMVNFYIKTESFDSAH--KLFDEMPQPSLVTWNSLISGYVH 151
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ + +++ L S D+Y+ + I + K + V
Sbjct: 152 CGQFRKALCLFIQLDGSGNLVDSYSLSIALSASGHLGWLILGQSIHSKVIKLGLEDSTVV 211
Query: 117 QNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLALP 175
N LI Y C + A +F M +D + +I A + L E YL QM P
Sbjct: 212 ANCLIDMYGKCESFEGAVEVFNDMIGKDTISWNSVIAASARNGRL-EQASRYLQQM-PRP 269
Query: 176 DTF 178
DT
Sbjct: 270 DTI 272
>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 408
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 46 KITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD----- 100
K P VF +N MI G+ + K+ + ++ D+ +V D YTF L F ++
Sbjct: 183 KRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVRE 242
Query: 101 ---IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVD 157
+ + K + + N+L+ YCL EVD A+ IF + G+ +R +
Sbjct: 243 GKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQ--RGVTANVRTMNLF 300
Query: 158 DDLH--ELFPEYLVQMLALPDTFMGEG 182
++H E+ P+ + +L D F G
Sbjct: 301 QEMHCKEIIPD-TIAYSSLIDGFCKSG 326
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYE--KGDLKYECKVFRKITQPSVFLWNT 57
+ L QIH+ IK G + + R+ + DL Y K+F ++ Q + F WNT
Sbjct: 36 IRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 95
Query: 58 MIKGYSRIDSHKN--GVLMYLDLLKSD-VRRDNYTFPFLFKGFT--------RDIAGSLE 106
+I+G+S D K + ++ +++ + V + +TFP + K + I G
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLAL 155
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
K FV + L+ Y +CG + AR +FY + + D
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD K +F K+ Q SV WNTMI GYS K+ V ++ ++ K D+R + T +
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVL 281
Query: 95 KGFTRDIAGSL----------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+R GSL E S I + + +ALI Y CG ++ A +F
Sbjct: 282 PAISR--LGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332
>gi|125533989|gb|EAY80537.1| hypothetical protein OsI_35717 [Oryza sativa Indica Group]
Length = 543
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRID 66
IH++ + LG+ P T + L Y +VF ++WNT+++ ++
Sbjct: 44 IHARAVVLGISANP--AFATSLITAVAPACLAYARRVFDAAPSRDAYMWNTLLRAHAHSR 101
Query: 67 SH-KNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
+H ++ + +Y + + V D+YT+P + T R G + + FV
Sbjct: 102 AHARDALALYARMRAAGVAPDHYTYPIVLPACTAARAPRLGRAAHGDAVRFALARDGFVS 161
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDDDG 146
+ALIS Y GEV A +F E DD
Sbjct: 162 SALISMYSQEGEVRDAERVF---AERDDA 187
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 37/174 (21%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M Q KQIH+ I L + + + L +GD +Y +F I P++F +N++I
Sbjct: 1 MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSII 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----------------------- 96
Y+ ++ +L +++R +++TF L K
Sbjct: 61 TSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQVFTLSMKLGNSSDV 120
Query: 97 -FTRDIAGSLEK------------SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + K C V +L+S YC CG V+ AR +F
Sbjct: 121 YFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVF 174
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH+ +G+ T T + +Y K G++ C+VF K+T+ +V W +I+ +
Sbjct: 177 RKIHTIVKAMGMETDVAVA--TALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ +Y +L++ + + TF L R I + + + +
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI 294
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NALI+ YC C V AR IF
Sbjct: 295 VANALITMYCKCNSVQEAREIF 316
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +H Q +LG+ + + Y K D+ +VFR++T V W++MI Y+
Sbjct: 76 KMVHKQLDELGVEIDIYLGNS--LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYA 133
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + +++ + TF + K R I ++ + V
Sbjct: 134 GNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVA 193
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHELFPEYLVQML 172
V ALI+ Y CGE+ +A +F+ M+ + +I+ A L+E F Y QML
Sbjct: 194 VATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELY-EQML 250
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+H+L Q+H+ + G+ Y L G + Y ++F +I P F++N++I+
Sbjct: 25 VHRLNQLHAHLVVHGV-DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIR 83
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVM 112
Y + + + +++ + + +T PFL K R A G + K V
Sbjct: 84 AYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG 143
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+VFV NAL+ +Y G + +R F
Sbjct: 144 QVFVGNALLHSYASAGSLGDSRRFF 168
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS 67
H +KLG + + + G L + F ++ +V WN+MI GY++ +
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSY-ASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGN 191
Query: 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV----------MRVFVQ 117
+ ++ + + + D +T L F G+LE +V + + +
Sbjct: 192 TREACSLFEGMRRQGLLADEFTLVSLL--FACSAEGNLEFGKLVHSHLLVRGCRIDLILA 249
Query: 118 NALISTYCLCGEVDMARGIFYM 139
NAL+ Y CG++ MA F M
Sbjct: 250 NALVDMYGKCGDLLMAHTCFDM 271
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY K G L +VF ++ PS W +I Y
Sbjct: 570 EQLHARSLKLPSHTNPHV--LTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 627
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ + VF
Sbjct: 628 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 687
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 688 VATAAVDLYVKCGEMAKAREVF 709
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ L IH+ + G + + L LY K G + Y K+F + +P+ FLW +I
Sbjct: 16 LKTLTTIHAHLLISGSIASSDLT-LNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALI 74
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-------DIAGSLEKSC-IV 111
G++ + ++N ++ + + ++ N+T + K +R D+ L C
Sbjct: 75 HGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYE 134
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V+N +I + CGE+ AR +F
Sbjct: 135 FDLVVKNVMIELFMRCGEMGSARQMF 160
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY K G L +VF ++ PS W +I Y
Sbjct: 546 EQLHARSLKLPSHTNPHV--LTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 603
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ + VF
Sbjct: 604 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 663
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 664 VATAAVDLYVKCGEMAKAREVF 685
>gi|125533129|gb|EAY79677.1| hypothetical protein OsI_34823 [Oryza sativa Indica Group]
Length = 895
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H++++KL T PH T L LY K G L +VF ++ PS W +I Y
Sbjct: 570 EQLHARSLKLPSHTNPHV--LTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYM 627
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVMRVF 115
+ V + + + +R D++T + R D+A + E+ + VF
Sbjct: 628 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 687
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V A + Y CGE+ AR +F
Sbjct: 688 VATAAVDLYVKCGEMAKAREVF 709
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQIH+ IK G + H + L +Y K GD+ VF I+ P W +MI
Sbjct: 1123 LDQGKQIHAHAIKAGFDSDLHV--NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMI 1180
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G + + +Y + +S V D YTF L K + R + ++ K V
Sbjct: 1181 SGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 1240
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+ Y CG ++ A +F
Sbjct: 1241 SDPFVGTSLVDMYAKCGNIEDAYRLF 1266
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
KQ+H +K GL + + +Y K Y + VF + + WN+MI +
Sbjct: 924 KQVHGIAVKSGLDSDVSVANS--LVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 981
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---------FTRDIAGSLEKSCIVMRV 114
+ + V +++DLL ++ D++T + + +R I K+ +
Sbjct: 982 QSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADS 1041
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV LI Y G+++ A +F
Sbjct: 1042 FVATTLIDVYSKSGKMEEAEFLF 1064
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+H+ IKL ++ P T + +Y K G+++ ++F+K+ ++ LWN M+
Sbjct: 1224 LEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAML 1281
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
G ++ + + V ++ + + D +F
Sbjct: 1282 VGLAQHGNAEEAVNLFKSMKSHGIEPDRVSF 1312
>gi|125571124|gb|EAZ12639.1| hypothetical protein OsJ_02552 [Oryza sativa Japonica Group]
Length = 607
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
+ F + + F W +I +SR H + Y +L++ V DN+ P + K
Sbjct: 124 RAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVLKACAGLG 183
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G R + G K+ + V+V ++L+ Y CGEVD AR +F
Sbjct: 184 LLGPGRAVHGYAWKAGVGNCVYVMSSLVDFYGKCGEVDDAREVF 227
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ IK L P +TR L+ Y K D L+ KV ++ + +V W MI YS
Sbjct: 72 QRVHAHMIKTRYL--PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ + ++ ++++SD + + +TF + G + I G + K +F
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y G++ AR IF
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIF 211
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 9 SQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFR------KITQPSV----FLWNTM 58
++ I G + P+ TR +L + Y + R ++ SV FLWN +
Sbjct: 7 ARXITTGFIKNPNLT--TRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAV 64
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCI 110
IK +S +N +L++ ++++ V D ++ + K +R + G L K+ I
Sbjct: 65 IKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGI 124
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+F+QN LI Y CG + AR +F
Sbjct: 125 YSDLFLQNCLIGLYLKCGCLGFARQVF 151
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H+ ++ L PH +T L +Y K G ++ K+F +IT ++ WN MI Y
Sbjct: 343 RSVHAYVVRRHFL--PHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYM 400
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF-------- 115
++ ++ + ++L+LL + D +T + F + GS+ + C M +
Sbjct: 401 YMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFV--LLGSI-RQCKQMHSYIVKLGYGD 457
Query: 116 ---VQNALISTYCLCGEVDMARGIF 137
+ NA++ Y CG + +R IF
Sbjct: 458 STLIMNAVMHMYARCGNIVASREIF 482
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G + F +T+P FL N MI+G++ D + + Y +L + R D +TFP +
Sbjct: 67 AGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVV 126
Query: 94 FK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K G R ++ K + V+ N+L++ Y G V A +F
Sbjct: 127 LKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +HS K+GL H +++Y K G + Y KVF +IT WN+MI GYS
Sbjct: 149 RSVHSSLFKVGLERDDHISHSL--IMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYS 206
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS--LEKSCIVMRV----F 115
K+ + ++ + + D T + D+ LEK I ++ F
Sbjct: 207 EAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTF 266
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEYL 168
+ + LI+ Y CG++D AR +F M +D + +I + + + E F +
Sbjct: 267 LGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFF 320
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 18/148 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH--CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
++QL++I +Q + L + KP+ PK E GD Y + +P+ + +N M
Sbjct: 47 VNQLREIQAQML-LHSVEKPNFLIPKAV------ELGDFNYASFLLSVTEEPNHYSFNYM 99
Query: 59 IKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSC 109
I+G + I + H+ + +Y + S ++ DN+T+ F+F G R + SL K
Sbjct: 100 IRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVG 159
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + ++LI Y CG V AR +F
Sbjct: 160 LERDDHISHSLIMMYAKCGLVGYARKVF 187
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+ ++ LG + QT ++LY K G L K+F I SV WN MI GY +
Sbjct: 131 VHAHSVLLGFGSDRFV--QTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQN 188
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIV----MRVFVQ 117
+ + +Y ++ + V D+ TF + D+ +E+ + + VF+
Sbjct: 189 GLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLG 248
Query: 118 NALISTYCLCGEVDMARGIF 137
+AL++ Y CG V AR F
Sbjct: 249 SALVNMYARCGLVSKARDWF 268
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H+Q IK + + + + + Y K G+ Y ++ + W +I GY+
Sbjct: 402 KELHAQIIKNSM--EENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYN 459
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + D+L V+ + YT+ K + R I G + K+ VF
Sbjct: 460 NLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVF 519
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG+VD AR +F
Sbjct: 520 VGSSLIDMYMRCGKVDEARSVF 541
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ +F K+ V W TMI Y + + M+ +++ R + +T +
Sbjct: 229 GDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVL 288
Query: 95 KGFTRDIAGSLEKS--CIVMR------VFVQNALISTYCLCGEVDMARGIFYM 139
K + A K C V++ + + +AL++ Y CGEV A+ +F M
Sbjct: 289 KACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDM 341
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
+VF ++ + SV W M+ Y ++ + V ++ D++ S V+ ++ TF L K
Sbjct: 136 EVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERC 195
Query: 102 AGSLEKS---CIV----MRVFVQNALISTYCLCGEVDMARGIF 137
L + CIV V V +A+ Y CG+V A IF
Sbjct: 196 DAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASAIF 238
>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD- 100
KVF ++ P+V + +I G+S+ D V ++ +L S + + YTF + R+
Sbjct: 151 KVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNM 210
Query: 101 -------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G + K ++ VF+ NAL+ YC CG +D+ +F
Sbjct: 211 DYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLF 254
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E G L +VF K+ + + +N ++ G SR D + +++++L+ V + T
Sbjct: 376 EFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTS 435
Query: 93 ------LFKGF--TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
L K F ++ I G + K I+ ++ AL+ Y CG ++ A IFY ++
Sbjct: 436 IITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLEN 495
Query: 145 D 145
D
Sbjct: 496 D 496
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYSR 64
+H +K G+ HCP L +Y K D + ++ F ++ + + W ++I Y R
Sbjct: 237 LHGFGVKAGV---GHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR 293
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMR-----VFV 116
+ V ++L + +S ++ D L G D G + IV R V +
Sbjct: 294 AGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLI 353
Query: 117 QNALISTYCLCGEVDMARGIFYMSCEDD 144
NALIS Y C +VD+A +F M + D
Sbjct: 354 GNALISMYAKCKQVDIAATVFRMLHQRD 381
Score = 36.6 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+ K+F + V W+ +I YS + K+ +L+Y +L V+ ++ T +
Sbjct: 469 GNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVI 528
Query: 95 KGFTRDIA---GSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
A G L S + + + AL+ Y CG++ +AR +F E D
Sbjct: 529 SSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERD 586
>gi|449505010|ref|XP_004162352.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g47460-like [Cucumis sativus]
Length = 639
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++Y ++ K+ P+ WN ++ GY D + + + DVR D +TF +
Sbjct: 285 GDIEYAVEILSKMDSPNSSSWNAVLTGYVDRDETWEALSFFTKMHSCDVRMDQFTFSSIL 344
Query: 95 KGFT--RDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
G + L C + + V +ALIS Y CG V+ A IF
Sbjct: 345 SGVAGLSALKWGLAIHCCITKCGLDTSTVVGSALISMYSKCGHVNYAEMIF 395
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 14/182 (7%)
Query: 6 QIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+HS ++ G + + + E D + K+F ++ QPS+ WN++I GY
Sbjct: 94 QLHSYILRSGFASNVFVGTAMVNFYIKTESFDSAH--KLFDEMPQPSLVTWNSLISGYVH 151
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ + +++ L S D+Y+ + I + K + V
Sbjct: 152 CGQFRKALCLFIQLDGSGNLVDSYSLSIALSASGHLGWLILGQSIHSKVIKLGLEDSTVV 211
Query: 117 QNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLALP 175
N LI Y C + A +F M +D + +I A + L E YL QM P
Sbjct: 212 ANCLIDMYGKCESFEGAVEVFNDMIGKDTISWNSVIAASARNGRL-EQASRYLQQM-PRP 269
Query: 176 DT 177
DT
Sbjct: 270 DT 271
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 38/171 (22%)
Query: 5 KQIHSQTIKLGLLT-----------------------------KPHCPKQTRYLLLY-EK 34
KQ+H++T+K+GL T KP+ T + Y +K
Sbjct: 119 KQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKK 178
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + ++F+++ + +V WN M+ G+S++ ++ V +++++L+ + TFP
Sbjct: 179 GKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAI 238
Query: 95 K--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + KS VFV N+L+S Y CG ++ + +F
Sbjct: 239 TSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVF 289
>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 682
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WNTMIKG 61
QIH+ + G+ + H + + Y +L E + I + S L WN +I
Sbjct: 65 QIHAHCVSSGV--EYHSALVPKLVTFYSAFNLHREAQ---SINENSDILHPLPWNVLIAS 119
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIA------GSLEKSCIVMR 113
Y++ + + V Y ++ +R D +T+P + K G T D+A GS+E S
Sbjct: 120 YAKNELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCS 179
Query: 114 VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELF 164
++V NALIS Y G V +AR +F +MS D + +I A E F
Sbjct: 180 LYVCNALISMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAF 231
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
KVF ++ Q S+ WN+MI GY + V ++ + +S V D+ TF + ++
Sbjct: 164 KVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQ-- 221
Query: 102 AGSLEKSC----------IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
GSL+ C I M V + +L++ + CG+V AR +FY E +
Sbjct: 222 LGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGN 274
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 1 MHQLKQIHSQTIKLG------LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL 54
+ +L+Q H+ + G LLTK L G + Y ++FR ++ P FL
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLTKL-------LTLSCAAGSIAYTRRLFRSVSDPDSFL 75
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA----GSLEKSCI 110
+N++IK S+ + VL Y +L S + YTF + K D++ G+L S +
Sbjct: 76 FNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKA-CADLSLLCIGTLVHSHV 134
Query: 111 VMR-----VFVQNALISTYCLCGEVDMARGIF 137
+ FVQ ALI+ Y +AR +F
Sbjct: 135 FVSGYASDSFVQAALIAFYAKSCTPRVARKVF 166
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK---YECKVFRKITQPSVFLWNTMI 59
QL QIH+Q L + Q L+ LK Y +FR P++F++N +I
Sbjct: 55 QLHQIHAQIFLHNLFSNSRVVTQ----LISSSCSLKSLDYALSIFRCFDHPNLFVFNALI 110
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
+G + + V ++ +L+ +R D T PF+ K G R + G + K +
Sbjct: 111 RGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE 170
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV+ +L+ Y GE+ +F
Sbjct: 171 FDSFVRVSLVDMYVKIGELGFGLQLF 196
>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD- 100
KVF ++ P+V + +I G+S+ D V ++ +L S + + YTF + R+
Sbjct: 151 KVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNM 210
Query: 101 -------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G + K ++ VF+ NAL+ YC CG +D+ +F
Sbjct: 211 DYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLF 254
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E G L +VF K+ + + +N ++ G SR D + +++++L+ V + T
Sbjct: 376 EFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTS 435
Query: 93 ------LFKGF--TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
L K F ++ I G + K I+ ++ AL+ Y CG ++ A IFY ++
Sbjct: 436 IITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLEN 495
Query: 145 D 145
D
Sbjct: 496 D 496
>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+ + K+G T YL L KG+ ++F ++ S+ WN MI GY++
Sbjct: 299 KQVQAFCYKVGCEANLPVKNSTMYLYL-RKGETDEAMRLFEEMDSSSIITWNAMISGYAQ 357
Query: 65 I-DSHKN----------GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---------AGS 104
I DS K+ + ++ DL++S+++ D +TF + + + A +
Sbjct: 358 IMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANT 417
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ C+ V V +AL++ Y CG ++ A F
Sbjct: 418 IKTGCLS-DVVVNSALVNMYNKCGSIECATKAF 449
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH+ TIK G L+ + + +Y K G ++ K F ++ + W +MI
Sbjct: 407 LEQGEQIHANTIKTGCLSD--VVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMI 464
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS 108
GYS+ ++ + ++ D++ S R + TF L + AG +E++
Sbjct: 465 SGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACS--YAGLVEEA 511
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M++LKQI + T++ G+ + T+ L+ L + + Y K+F I +P+VFL+N +
Sbjct: 1 MNRLKQIQAYTLRNGI-------EHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKL 53
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
I+ YS H +Y + + ++F FLF R + KS
Sbjct: 54 IQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGF 113
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF-----------------YMSCEDDDGLHELIRI 153
VF AL+ Y G + +AR F Y C D +G EL R+
Sbjct: 114 GCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRL 173
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFL 93
GDL+ ++FR + +V W MI GY++ + + M+L + ++++R + T +
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 94 FKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
G+LE + ++V NAL+ Y CG +D A G+F E+
Sbjct: 222 LPACAN--LGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF----EE 275
Query: 144 DDGLHEL---------IRIKAVDDDLHELFPEYLVQMLALPD-TFMG 180
DG L + + D+ ELF + L + A D TF+G
Sbjct: 276 IDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H+Q IK + + + + + Y K G+ Y ++ + W +I GY+
Sbjct: 369 KELHAQIIKNSM--EENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYN 426
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + D+L V+ + YT+ K + R I G + K+ VF
Sbjct: 427 NLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVF 486
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG+VD AR +F
Sbjct: 487 VGSSLIDMYMRCGKVDEARSVF 508
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ +F K+ V W TMI Y + + M+ +++ R + +T +
Sbjct: 196 GDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVL 255
Query: 95 KGFTRDIAGSLEKS--CIVMR------VFVQNALISTYCLCGEVDMARGIFYM 139
K + A K C V++ + + +AL++ Y CGEV A+ +F M
Sbjct: 256 KACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDM 308
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
+VF ++ + SV W M+ Y ++ + V ++ D++ S V+ ++ TF L K
Sbjct: 103 EVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERC 162
Query: 102 AGSLEKS---CIV----MRVFVQNALISTYCLCGEVDMARGIF 137
L + CIV V V +A+ Y CG+V A IF
Sbjct: 163 DAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASAIF 205
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--D 100
VF +I +P++ +WN MI G S+ D + + Y + ++ + TF FLFK R D
Sbjct: 28 VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 87
Query: 101 IAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIFYMSCEDDD--------G 146
+ M++ FV NALI Y GE+ MA+ +F E D G
Sbjct: 88 VRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICG 147
Query: 147 LHELIRIKAVDDDLHEL 163
++ R K V D E+
Sbjct: 148 YYQFNRFKKVLDLFREM 164
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L K+F ++ V W +MI GYS H V ++ +++ S V+ D T
Sbjct: 253 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL 312
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
GSL+ K I VFV N+LI YC CG V+ A +F
Sbjct: 313 SACAH--LGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVF 363
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q+ ++HS +KLG + ++ + G+L KVF + + V WN++I GY
Sbjct: 92 QMVRVHS--MKLGFESXSFVSNALIHMYVCF-GELAMAQKVFDGMLERDVVSWNSIICGY 148
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFP-------FLFKGFTRD-IAGSLEKSCIVMRV 114
+ + K + ++ ++ +VR D+ T FL + D + +++ +V+ +
Sbjct: 149 YQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDL 208
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
++ N LI Y G +D A +FY
Sbjct: 209 YLGNTLIDMYGRRGMIDFAGRVFY 232
>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
Length = 930
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLWNT 57
QL+ H KL + + +TR LY G ++ K+F ++ + S+ W
Sbjct: 28 QLQSNHIAQTKLKPIPQNEIHARTRLFNLYLRMYVNAGAMQEARKLFDEMPERSLVSWTI 87
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSD----VRRDNYTFPFLFKG--------FTRDIAGSL 105
++ GY+R ++M+ D+L +R D++ F + + + R + G +
Sbjct: 88 VMSGYARHGPASEVLMMFWDMLCGSGGGLLRPDSFVFAVVLRACGMVECLSYGRGVHGLV 147
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K V+ FV+NAL+S Y CG ++ A +F
Sbjct: 148 VKQSSVVDSFVENALVSMYGSCGALEDAAVVF 179
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L+ VF I +P + W++++ GY + + G+ ++ D++ + D + F +
Sbjct: 170 GALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVL 229
Query: 95 KGFTRDIAGSL--EKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
T + C +++ ++++N+L+ Y CG+++ R +F
Sbjct: 230 GACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVF 280
>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR--RDNYTFPF 92
G + Y K+F ++ Q S+ +N +I+ Y R + + + +++ ++ ++ D YT+PF
Sbjct: 63 GHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPF 122
Query: 93 LFK--GFTRDIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K G + I+ G + +S M +VQNAL++ Y G V+MAR +F
Sbjct: 123 VAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVF 175
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
Q L +Y G ++ VF + V WNTMI GY R + ++M+ ++ V
Sbjct: 155 QNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGV 214
Query: 84 RRDNYTFPFLF------KGF--TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
D+ T + KG R++ +E+ + ++ V+NAL++ Y CG +D AR
Sbjct: 215 DPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARF 274
Query: 136 IF 137
+F
Sbjct: 275 VF 276
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK--------SDVRRDNYTFPFLF 94
VF +I P++ L N MIK Y++ H++ V +Y+ +L+ D +T+PFL
Sbjct: 64 VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
K R + + +S VQN+LI Y CG++ AR F DG
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAF-------DG 176
Query: 147 LHE 149
+ E
Sbjct: 177 MRE 179
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 21 HCPKQTRYLLLYEKGDLKYE-----CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
H P Y L +G LK E +FR + + +V WN MI GYS++ ++ V ++
Sbjct: 430 HEPNVVSYTTLI-RGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNLF 488
Query: 76 LDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+ +L+ + TFP G R GS K VF+ N+L+S Y C
Sbjct: 489 VVMLREGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKC 548
Query: 128 GEVDMARGIF 137
G ++ + +F
Sbjct: 549 GSMEESLLVF 558
>gi|15222662|ref|NP_176613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169396|sp|Q9C7V5.1|PP104_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g64310
gi|12323481|gb|AAG51720.1|AC066689_19 hypothetical protein; 77621-75963 [Arabidopsis thaliana]
gi|332196104|gb|AEE34225.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 552
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HS K L P+ Q R+ L + DL K+F + SVFLWN++I+ Y+
Sbjct: 25 QKLHSFVTKSKLARDPYFATQLARFYALND--DLISARKLFDVFPERSVFLWNSIIRAYA 82
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD 100
+ + ++ +L+SD R DN+T+ L +GF+
Sbjct: 83 KAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSES 119
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 41 CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---F 97
C VF I++P + +++I GYSR +HK + ++ +L S + D +
Sbjct: 262 CSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSCAEL 321
Query: 98 TRDIAGSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
+ ++G S ++ + + V +ALI Y CG + A +F
Sbjct: 322 SDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLF 366
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QI I+ G + +T L +Y K G LK +VF KI++ +V WN MI Y
Sbjct: 433 QQIQDHIIEAGYGSDDRV--RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMR------VF 115
+ + + N + + LLK ++ ++ TF + + L K ++M+ +
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+S + CG++ A+ +F
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLF 572
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H +K GL + H + + GDL +F + + + WNT+I G+
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFV-NCGDLMSAKNLFNDMPKRDLVSWNTIIAGF-- 590
Query: 65 IDSHKNGVLM-YLDLLK-SDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ KN V Y +++ S ++ D TF L R + + ++ V
Sbjct: 591 VQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
V LIS Y CG ++ A +F+
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFH 674
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q K++H++ ++G T+ + T L +Y K G ++ +VF + +V W MI
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVG--TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVMRVF- 115
G+++ L + +++S + + TF + + A G + I+ +
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445
Query: 116 ----VQNALISTYCLCGEVDMARGIF 137
V+ AL+S Y CG + A +F
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVF 471
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 22/203 (10%)
Query: 3 QLKQIHSQTIKLG----LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
L + H+Q I+ G L T ++ L++ G ++ +F + +P +FL+N +
Sbjct: 23 HLAETHAQLIRNGYQHDLATVTKLTQK-----LFDVGATRHARALFFSVPKPDIFLFNVL 77
Query: 59 IKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIV----M 112
IKG+S + + Y LLK + + DN+T+ F D G L +V
Sbjct: 78 IKGFS-FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDS 136
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE-----LIRIKAVDDDLHELFPEY 167
+FV +AL+ YC V AR +F + D L L+R DD + ++F +
Sbjct: 137 NLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSV-QVFKDM 195
Query: 168 LVQMLALPDTFMGEGLEVIPKSQ 190
+ Q + L T + L + + Q
Sbjct: 196 VAQGVRLDSTTVATVLPAVAEMQ 218
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y KVF K+ LWNTMI G R + + V ++ D++ VR D+ T +
Sbjct: 154 VAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPA 213
Query: 97 FT--RDIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIFYM 139
+++ + C+ +++ +V LIS + C +VD AR +F M
Sbjct: 214 VAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGM 264
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H I +K G + +P T +Y + ++ ++F + ++ +V WN MI
Sbjct: 321 LHLACCIQGFCVKSGTILQPSV--STALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMI 378
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--------IV 111
GY++ + + ++ +++ ++ + T + + A S KS +
Sbjct: 379 SGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLE 438
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++V ALI Y CG + A +F ++ E +
Sbjct: 439 QNIYVSTALIDMYAKCGNISEASQLFDLTSEKN 471
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD---VRRDNYTFPF 92
DL+ K F ++ + ++ WN +I GYSR H+ + +Y D++ ++ D TF
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R+I S VQNALI+ Y CG ++ AR +F
Sbjct: 169 ALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVF 221
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q ++I ++T+ G + Q + +Y K G L+ KVF ++ V WNTMI
Sbjct: 179 ISQGREIEARTVASGYASDS--IVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
GY++ + + ++ + +D + + TF L T R I +++
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYE 296
Query: 112 MRVFVQNALISTYCLC-GEVDMARGIF 137
+ + N L++ Y C ++ AR +F
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVF 323
>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
Length = 1490
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 13 KLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNG 71
+ GL +P +T+ L +Y K G L KVF + + +++ W+ MI YSR + +
Sbjct: 106 RFGLFPEPDVFVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRENRWREV 165
Query: 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF----------VQNALI 121
++ +++ V D++ FP + +G G +E ++ V V N+++
Sbjct: 166 SKLFRLMMEEGVLPDDFLFPKILQGCAN--CGDVETGKLIHSVVIKLGMSSCLRVSNSIL 223
Query: 122 STYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+ Y CGE D A F E D + + + HE E + +M
Sbjct: 224 AVYAKCGEWDFATKFFRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEM 273
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
K IHS IKLG+ + C + + +L +Y K G+ + K FR++ + V WN+++ Y
Sbjct: 201 KLIHSVVIKLGMSS---CLRVSNSILAVYAKCGEWDFATKFFRRMKERDVVAWNSVLLAY 257
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
+ H+ V + ++ K + T+ L G+ + D+ +E I V
Sbjct: 258 CQNGKHEEAVELVEEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMENFGITADV 317
Query: 115 FVQNALISTYCLCG----EVDMARGIF 137
F A+IS G +DM R +F
Sbjct: 318 FTWTAMISGLIHNGMRYQALDMFRKMF 344
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++HS +K+G + + +Y K G L+ KVF + V+ WN+MI GY +
Sbjct: 373 EVHSIAVKMGFIDDVLVGNS--LVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQ 430
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMR-VF 115
++ + ++VR + T+ + G+ + D+ +EK V R
Sbjct: 431 AGYCGKAYELFTRMQDANVRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTA 490
Query: 116 VQNALISTYCLCGEVDMARGIF 137
N +I+ Y G+ D A IF
Sbjct: 491 TWNLIIAGYIQNGKKDDALEIF 512
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 27/142 (19%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
LKQIH+ ++ G +Q +++++E EC P FLWNTMI+G+
Sbjct: 68 LKQIHACIVQSGF-------EQNLFVIVFEN----IEC--------PDEFLWNTMIRGFG 108
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMR------VF 115
+ + + Y + + + DN+TF FL K G + + C V++ VF
Sbjct: 109 KSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSVLLGKQMHCSVLKYGFESHVF 168
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V+N LI Y + + +++R +F
Sbjct: 169 VRNTLIHMYGIFKDFEISRQLF 190
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG---DLKYECKVFRKITQPSVFLWNTMIKG 61
KQ+H +K G + R L++ G D + ++F +I P + WNT+I
Sbjct: 152 KQMHCSVLKYGFESHVF----VRNTLIHMYGIFKDFEISRQLFEEIPSPELVAWNTVIGC 207
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
Y K + M+ +LK + D T + + R I + + +
Sbjct: 208 YVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSALGELDIGRWIHSCISNTGLGRF 267
Query: 114 VFVQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHE---LFPEYLV 169
V + N++I Y CG ++ A F MS + + +I A +E LF + L
Sbjct: 268 VEINNSIIDMYAKCGALEEAYEAFNKMSQRNTVTWNTMILGLATHGHTNEALVLFSKMLE 327
Query: 170 QMLALPD--TFMG 180
Q L PD TF+G
Sbjct: 328 QKLMEPDSVTFLG 340
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M + K++H+ I GL + H K L + +F I PS +L+NTM
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR---- 113
+ Y+ + + +L++ +L+ D YTFPFL K + + E C ++
Sbjct: 61 RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
VFV+N+LI Y +D AR +F
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVF 146
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QI I+ G + +T L +Y K G LK +VF KI++ +V WN MI Y
Sbjct: 433 QQIQDHIIEAGYGSDDRV--RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMR------VF 115
+ + + N + + LLK ++ ++ TF + + L K ++M+ +
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+S + CG++ A+ +F
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLF 572
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H +K GL + H + + GDL +F + + + WNT+I G+
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFV-NCGDLMSAKNLFNDMPKRDLVSWNTIIAGF-- 590
Query: 65 IDSHKNGVLM-YLDLLK-SDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRV 114
+ KN V Y +++ S ++ D TF L R + + ++ V
Sbjct: 591 VQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
V LIS Y CG ++ A +F+
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFH 674
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q K++H++ ++G T+ + T L +Y K G ++ +VF + +V W MI
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVG--TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA---GSLEKSCIVMRVF- 115
G+++ L + +++S + + TF + + A G + I+ +
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445
Query: 116 ----VQNALISTYCLCGEVDMARGIF 137
V+ AL+S Y CG + A +F
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVF 471
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 20 PHCPKQTRYLLLY----EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS--HKNGVL 73
PH P + LL + G L Y VF +I P WN+MI+G+S+ S ++
Sbjct: 427 PHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIV 486
Query: 74 MYLDLLK-SDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTY 124
Y +L S R D YTF FL K G R++ G + + V + LI +Y
Sbjct: 487 FYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSY 546
Query: 125 CLCGEVDMARGIF-------------YMSCEDDDGLHE 149
G ++ A +F +SC GLHE
Sbjct: 547 AGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 584
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
KVF ++ + WN+MI Y + H+ + MY + S+V D +T L
Sbjct: 557 KVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAH-- 614
Query: 102 AGSLEKSC----------IVMRVFVQNALISTYCLCGEVDMARGIF 137
G+L +V +FV NALI Y CG + A IF
Sbjct: 615 VGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIF 660
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYS 63
+Q+H+ I G L + + T+ Y L ++ F I + FLWN MI+GY+
Sbjct: 61 QQLHAYIITSGNL-QNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLKNSFLWNFMIRGYA 119
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIV------MRVF 115
+ +Y D+ + D +T+PF+ K G RD+ C V + ++
Sbjct: 120 CNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITGFNLDIY 179
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+L++ Y G + MAR +F
Sbjct: 180 VGNSLLAMYSKFGNMKMARMVF 201
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----- 96
K+F + WN+MI GY+R + ++ ++ + D TF +
Sbjct: 301 KLFEHMAWKDTVSWNSMISGYARNRDAFESLRVFCRMVLEGTKPDKITFITVLGACEQIT 360
Query: 97 ---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F R + L K +FV ALI Y CG + A +F
Sbjct: 361 AMEFGRSVHSYLSKKGFSATIFVATALIDMYAKCGNLACAHLVF 404
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+ I G + H T+ ++ Y K GD+ VF + + SV W M+ GYS+
Sbjct: 52 IHTHLITNGFGSDLHL--NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQN 109
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQ 117
+ +++ D+ V+ + +T+ + T + G ++K V +FV+
Sbjct: 110 GRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVK 169
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDD 144
+AL+ + CG+++ A +F E D
Sbjct: 170 SALVDFHSKCGKMEDASYLFGTMMERD 196
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+ +I LG + T ++LY K G L K+F I +V WN MI GY +
Sbjct: 127 VHAHSILLGFGSDRFV--LTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQN 184
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMR----VFVQ 117
+ G+ +Y ++ + D+ TF + D+ +E+ + R VF+
Sbjct: 185 GLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLG 244
Query: 118 NALISTYCLCGEVDMARGIF 137
+AL++ Y CG VD AR F
Sbjct: 245 SALVNMYARCGVVDKARQWF 264
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 30/161 (18%)
Query: 2 HQLKQIHSQTIKLGLL--------------TKPHCP--KQTRYLLLYEKGDLKYEC-KVF 44
+ + Q+H++ IK G L + PH P + RY+ +Y ++
Sbjct: 28 NDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFF-----TRYAVQRIR 82
Query: 45 RKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----- 99
R FLWN +IK YS + ++++ +L++ D ++F + K R
Sbjct: 83 RNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVE 142
Query: 100 ---DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I G L K I +F+ N LI+ Y CG+++ AR +F
Sbjct: 143 EGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVF 183
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
D+ KVF +I + +V + N MI+ Y ++ G+ ++ + V+ D+YTFP + K
Sbjct: 90 DVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLK 149
Query: 96 GFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMAR 134
+ + I GS K + +FV N L+S Y CG + AR
Sbjct: 150 ACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 196
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
++ Y +F K+ + S+ WN MI Y + V +Y + D + +
Sbjct: 259 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLP 318
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I G +E+ ++ + ++NALI Y CG +D AR +F
Sbjct: 319 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVF 368
>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
Length = 537
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP--SVFLWNTMIKG 61
+Q+H+ +K G + T+ + Y + G L + + + + F W +I
Sbjct: 89 RQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALGALPERHRNAFAWAAVIGL 148
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
+SR H + ++ +L++ V DN+ P + K G R + G K+ +
Sbjct: 149 WSRAGLHARALAGFVAMLEAGVPADNFVAPTVLKACAGLGLSGAGRAVHGYAWKAGVAEC 208
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V+V ++L+ Y CGEV+ AR +F
Sbjct: 209 VYVMSSLVDFYGKCGEVEDARAVF 232
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK---YECKVFRKITQPSVFLWNTMI 59
QL QIH+Q L + Q L+ LK Y +FR P++F++N +I
Sbjct: 55 QLHQIHAQIFLHNLFSNSRVVTQ----LISSSCSLKSLDYALSIFRCFDHPNLFVFNALI 110
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
+G + + V ++ +L+ +R D T PF+ K G R + G + K +
Sbjct: 111 RGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE 170
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV+ +L+ Y GE+ +F
Sbjct: 171 FDSFVRVSLVDMYVKIGELGFGLQLF 196
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
GDL ++F ++ + +V W TMI G+S+ H+ + M+ +L+ VR ++ T
Sbjct: 252 NGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSA 311
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T+ I L + + + AL+ Y CG + A +F
Sbjct: 312 LLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 363
>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1005
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTR 99
KVF ++ + F WN +I Y + + +Y ++ V D Y+FP L K G R
Sbjct: 117 KVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLR 176
Query: 100 DIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIFYMSCEDDDGL 147
DI E C+++++ F+ NAL+S Y + A+ +F S E D +
Sbjct: 177 DIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAV 230
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQPSVFLWNTM 58
M++LKQI + T++ G+ + T+ L+ L + + Y K+F I +P+VFL+N +
Sbjct: 1 MNRLKQIQAYTLRNGI-------EHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKL 53
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
I+ YS H +Y + + ++F FLF R + KS
Sbjct: 54 IQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGF 113
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF-----------------YMSCEDDDGLHELIRI 153
VF AL+ Y G + +AR F Y C D +G EL R+
Sbjct: 114 GCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRL 173
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFL 93
GDL+ ++FR + +V W MI GY++ + + M+L + ++++R + T +
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 94 FKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
G+LE + ++V NAL+ Y CG +D A G+F E+
Sbjct: 222 LPACAN--LGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF----EE 275
Query: 144 DDGLHEL---------IRIKAVDDDLHELFPEYLVQMLALPD-TFMG 180
DG L + + D+ ELF + L + A D TF+G
Sbjct: 276 IDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H ++ G+ KP+ L LY G + ++F K + SV WN MI GY+
Sbjct: 64 KQVHEHILRFGM--KPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYA 121
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ ++ + + + D +TF + + R++ + ++ +
Sbjct: 122 HRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT 181
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDD 144
V NALIS Y CG V AR +F M+ D+
Sbjct: 182 VGNALISMYAKCGSVRDARRVFDAMASRDE 211
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH++ +K GL++ + +Y K G +K +VF ++ + V W ++ GY+
Sbjct: 367 KEIHARAVKDGLVSDVRFGNA--LINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA 424
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ +L+ V + T+ + K + ++I + K+ I +
Sbjct: 425 DCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLA 484
Query: 116 VQNALISTYCLCGEVDMA 133
V NAL+S Y CG V+ A
Sbjct: 485 VANALMSMYFKCGSVEDA 502
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL--LYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
KQIH+Q ++ ++ H + L +Y K G +K +VF + V WNTMI G
Sbjct: 266 KQIHAQIVE----SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGG 321
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMR 113
+ M+ +LK V D T+ + R +I K +V
Sbjct: 322 LVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSD 381
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V NALI+ Y G + AR +F
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVF 405
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
++FR++ + +V WN MI GYS+ + V ++L++ + V + TFP +
Sbjct: 130 RLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAG 189
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131
G R I S K + V++ N+L+S Y CG ++
Sbjct: 190 TLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLE 227
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE----KGDLKYECKVFRKITQPSVFLWNTM 58
+L+QIH+Q IK LL H +R + G L Y VF +I P+ F++ +
Sbjct: 21 ELRQIHAQMIKTNLLN--HQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFAL 78
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDN--YTFPFLFKGF--------TRDIAGSLEKS 108
IKG+S + +++Y +L ++ P + K R + G + K+
Sbjct: 79 IKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKT 138
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ FV N+++ Y GE+++AR +F
Sbjct: 139 HLWFDPFVGNSMVRMYIDFGEIELARRVF 167
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H+Q IK + + + + + Y K G+ Y ++ + W +I GY+
Sbjct: 671 KELHAQIIKNSM--EDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYN 728
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + D+L V+ + YT+ K + R I G + K+ VF
Sbjct: 729 NLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVF 788
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG+VD AR +F
Sbjct: 789 VGSSLIDMYMRCGKVDEARRVF 810
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
KVF ++ + SV W M+ Y ++ + V ++ D++ S V+ ++ TF L K
Sbjct: 405 KVFDEMPERSVVSWTAMMNAYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERC 464
Query: 102 AGSLEKS---CIV----MRVFVQNALISTYCLCGEVDMARGIF 137
L + CIV V V +A+ Y CG+V A IF
Sbjct: 465 DAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASAIF 507
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ +F K+ V W TMI Y + + M+ +++ R + +T +
Sbjct: 498 GDVASASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVL 557
Query: 95 KGFTRDIAGSLEKS--CIVMR------VFVQNALISTYCLCGEVDMARGIFYM 139
K + A K C V++ + + +AL++ Y CGEV A+ +F M
Sbjct: 558 KACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDM 610
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIHSQ GL Q ++ L DL Y + P WN +I
Sbjct: 677 IKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNILI 736
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV-------- 111
+GY+ ++ K+ + +Y ++ +R ++ TFPFL K A K V
Sbjct: 737 RGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLD 796
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V+V N L++ Y C ++ A +F
Sbjct: 797 CDVYVNNNLVNFYGSCKKILDACKVF 822
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHSQ I+ GL+ T + +Y K G + Y VF ++ + +V+ W+ MI G +
Sbjct: 885 RWIHSQVIERGLVLNYQL--GTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLA 942
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYT 89
+ K G+ ++LD+++S + NY
Sbjct: 943 QHGFAKEGLELFLDMMRSSLIHPNYV 968
>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 594
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+ + K+G T YL L KG+ ++F ++ S+ WN MI GY++
Sbjct: 117 KQVQAFCYKVGCEANLPVKNSTMYLYL-RKGETDEAMRLFEEMDSSSIITWNAMISGYAQ 175
Query: 65 I-DSHKN----------GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---------AGS 104
I DS K+ + ++ DL++S+++ D +TF + + + A +
Sbjct: 176 IMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANT 235
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ C+ V V +AL++ Y CG ++ A F
Sbjct: 236 IKTGCLS-DVVVNSALVNMYNKCGSIECATKAF 267
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH+ TIK G L+ + + +Y K G ++ K F ++ + W +MI
Sbjct: 225 LEQGEQIHANTIKTGCLSD--VVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMI 282
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS 108
GYS+ ++ + ++ D++ S R + TF L + AG +E++
Sbjct: 283 SGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACS--YAGLVEEA 329
>gi|297840043|ref|XP_002887903.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333744|gb|EFH64162.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 552
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HS K L P+ Q R+ L + DL K+F + SVFLWN++I+ Y+
Sbjct: 25 QKLHSFVTKSKLARDPYFATQLVRFYALND--DLVSARKLFDVFPERSVFLWNSIIRAYA 82
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98
+ + ++ +L SD R DN+T+ L +GF+
Sbjct: 83 KAYQFSTSLSLFSQMLSSDTRPDNFTYACLARGFS 117
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 41 CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---- 96
C V+ I +P + +++I GYSR +HK + M+ +L S + D +
Sbjct: 262 CSVYNSICEPDLVACSSLITGYSRCGNHKEALHMFAELRMSGKKPDCVLVAIVLGSCAEL 321
Query: 97 ----FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + G + + + + + V + LI Y CG +D A +F
Sbjct: 322 SNSVYGKKVHGYVIRLGLELDIKVCSGLIDMYSKCGLLDCAMSLF 366
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
L+++H I GL C + Y K L E K+F I P + LWN MI GY
Sbjct: 125 LRRVHGIAIMSGLGFDQICGSAI--VKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGY 182
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRD----IAGSLEKSCIVMRV--- 114
G+ ++ +L++ N YT L G IA S+ C+ + +
Sbjct: 183 GCCGFWDKGINLF-NLMQHRGHLPNCYTMVALTIGLIDPSLLLIAWSVHGFCLKINLDSH 241
Query: 115 -FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+V AL++ Y C + A ++ CE D
Sbjct: 242 SYVGCALVNMYSRCWCIVSACSVYNSICEPD 272
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQIH+ IK G + H + L +Y K GD+ VF I+ P W +MI
Sbjct: 46 LDQGKQIHAHAIKAGFDSDLHV--NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMI 103
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G + + +Y + +S V D YTF L K + R + ++ K V
Sbjct: 104 SGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 163
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+ Y CG ++ A +F
Sbjct: 164 SDPFVGTSLVDMYAKCGNIEDAYRLF 189
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+H+ IKL ++ P T + +Y K G+++ ++F+K+ ++ LWN M+
Sbjct: 147 LEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAML 204
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
G ++ + + V ++ + + D +F
Sbjct: 205 VGLAQHGNAEEAVNLFKSMKSHGIEPDRVSF 235
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH+Q I +G P +T+ L+L+ K GDL +F +++ S+ WN MI GY
Sbjct: 111 RRIHAQMIVVGYY--PDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIAGYV 168
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS----CIVMR------ 113
+ + G+ +Y ++ +S + D YTF +F+ +LEK C++++
Sbjct: 169 QKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACA--TLATLEKGKQAHCVMIKSQIKEN 226
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMS 140
V V +AL+ Y C + +F S
Sbjct: 227 VVVNSALMDMYFKCSSLYDGHRVFNKS 253
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
L ++ G++ VF+ + + +V WN MI GY ++ S+ ++++ D+ K+ V+ D T
Sbjct: 352 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 411
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + ++I + +S + + V AL+ Y CG VD A IF
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIF 467
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH + ++ G + + +Y K G L+ +VF +I + +V WN+MI GYS
Sbjct: 227 KEIHMELVRSGFALDGFV--SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 284
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRVF 115
K+ + ++ + + +R T + +R I G + ++ + +F
Sbjct: 285 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIF 344
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++LI Y CG + A +F
Sbjct: 345 VNSSLIDLYFKCGNIGSAENVF 366
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+ +K GL + + + LY K G + KVF T+ ++ +WN M+ G+
Sbjct: 347 QQIHAAAVKHGL--DANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFV 404
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF----TRDIAGSLEKSCIVMR------ 113
+ D + + M+ + ++D+ D++TF + + DI + CI ++
Sbjct: 405 QNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVH--CITIKNSMDAD 462
Query: 114 VFVQNALISTYCLCGEVDMARGIFYM 139
+FV NA++ Y G +D+A+ +F +
Sbjct: 463 LFVANAMLDMYSKLGAIDVAKALFSL 488
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+H +K G + C Q + +Y K ++K +VF I P W +MI
Sbjct: 176 LEQGRQVHCDVLKSGFCSSAFC--QAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMI 233
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMRVF 115
GY R+ ++ + ++ + K D T+ + A +L K +
Sbjct: 234 AGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTV 293
Query: 116 VQNALISTYCLCG 128
NA+IS+Y G
Sbjct: 294 AWNAVISSYSQSG 306
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTMIKGYS 63
KQ+HS T+K LL + + + + L+ K+ ++ ++ W I GY+
Sbjct: 650 KQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYA 709
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ ++M+ + DVR D TF + K + ++I G + KS V
Sbjct: 710 QNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYET 769
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+AL+ Y CG+V + IF
Sbjct: 770 AASALMDMYSKCGDVISSFEIF 791
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 23 PKQTRYLL----LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78
P Q Y+ L G L + ++I PS WN +I YS+ +Y D+
Sbjct: 259 PDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDM 318
Query: 79 LKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEV 130
+ + TF + + I + K + VFV ++LI+ Y G +
Sbjct: 319 KRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCI 378
Query: 131 DMARGIFYMSCEDDDGLHELIRIKAVDDDLHE 162
A+ +F S E + + + V +DL E
Sbjct: 379 SDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQE 410
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
++FR++ + +V WN MI GYS+ + V ++L++ + V + TFP +
Sbjct: 130 RLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAG 189
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131
G R I S K + V++ N+L+S Y CG ++
Sbjct: 190 TLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLE 227
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--- 99
+F KI +PSV WNT++ GY + + H+ + ++ + +V+ D T + +R
Sbjct: 374 MFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGN 433
Query: 100 -DIAGSLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++ + + + + +FV + LI Y CG+V +A IF M E D
Sbjct: 434 FELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERD 483
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 49/195 (25%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWN-------- 56
Q+HS + G H T + +Y E G +Y KVF +++QP+V WN
Sbjct: 134 QLHSHAFRHGF--DDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFR 191
Query: 57 ------------------------------TMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86
TMI G+++ S + + +LL+ R
Sbjct: 192 CGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPS 251
Query: 87 NYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+ + F + + G +EK+ + V V NALI TY CG VDMA+ +F
Sbjct: 252 EVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN 311
Query: 139 MSCEDDDGLHELIRI 153
+S E IR+
Sbjct: 312 ISLAMHGRADEAIRV 326
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD--LKYECKVFRKITQPSVFLWNTMIKGY 62
KQIH+ GL T P + D L Y ++F P F++NT+I+
Sbjct: 27 KQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFPNPDTFMYNTLIRSL 86
Query: 63 SRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM--------- 112
S + + + ++ LL+ + D+++F F KG D G ++ I +
Sbjct: 87 SHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIAND--GCSKRQGIQLHSHAFRHGF 144
Query: 113 --RVFVQNALISTYCLCGEVDMARGIF 137
+FV LIS Y CG + AR +F
Sbjct: 145 DDHIFVGTTLISMYAECGCYEYARKVF 171
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y +F I +P++ +WNTM +G++ + +Y+ ++ + ++Y+FPFL K
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 97 FTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I G + K + ++V +LIS Y G ++ A +F
Sbjct: 75 CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVF 123
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G + K+F +I+ V WN MI GY + K + +Y D++K++V+ D T
Sbjct: 143 SRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVT 202
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + +E + + N LI Y CGEV+ A G+F
Sbjct: 203 VVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLF 255
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C +F+ + + V WNT+I G++ ++ +K +L++ ++L+S ++ T
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300
Query: 90 FPFLFKGFTR----DIAGSLEKSCIVMRVFVQNA------LISTYCLCGEVDMARGIF 137
+ DI + V NA LI Y CG+++ A+ +F
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVF 358
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 17 LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP--SVFLWNTMIKGYSRIDSHKNGVL 73
L + ++ L LY G ++ ++F ++++ S F WN++I GY+ + +++ +
Sbjct: 109 LLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMA 168
Query: 74 MYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV------FVQNALISTYC 125
+Y + + V D +TFP + K G I+ E V+R FV NAL+ Y
Sbjct: 169 LYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYA 228
Query: 126 LCGEVDMARGIF-YMSCEDDDGLHELI 151
CG++ AR +F + C D + ++
Sbjct: 229 KCGDIVKARKVFDKIVCRDSVSWNSML 255
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEK 107
P FLWN +++ Y R +S + + +YL +++S V D Y+ P + K + D E
Sbjct: 80 PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKEL 139
Query: 108 SCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
+ +R+ F ++ I+ YC GE + AR +F
Sbjct: 140 HSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVF 175
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++HS ++LG + C ++ ++ LY K G+ + KVF + + + WN +I G +
Sbjct: 137 KELHSVAVRLGFVGDEFC--ESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLN 194
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLE-KSCIVMR------- 113
V M++D+ +S + D++T + G D++ + + C++
Sbjct: 195 HAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSD 254
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ + N+LI Y CG +D+A IF
Sbjct: 255 IMMLNSLIDMYGKCGRMDLASHIF 278
>gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa]
gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 17 LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQ--PSVFLWNTMIKGYSRIDSHKNGVL 73
L + + ++ + LY GD++ +VF ++ + S F WN++I GY+ +++ +
Sbjct: 39 LLRRNAGISSKLVRLYSSCGDVEVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMA 98
Query: 74 MYLDLLKSDVRRDNYTFPFLFK-----GFTRDIAGSLEKSCIVMRV----FVQNALISTY 124
+Y + + V D +TFP + K G R I ++ + + + FV NAL+ Y
Sbjct: 99 LYFQMEEEGVEPDQFTFPRVLKACGGIGLIR-IGEAVHRDLVRLGFANDGFVLNALVDMY 157
Query: 125 CLCGEVDMARGIF-YMSCED 143
CG++ AR IF + C+D
Sbjct: 158 AKCGDIVKARRIFDKIDCKD 177
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK----YECKVFRKITQPSVFLWNT 57
+ L+Q+H+Q I L H LL+ L+ Y +F P+VF++ +
Sbjct: 15 NHLRQLHAQIIHNSL----HHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTS 70
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV--- 114
M++ YS + H VLMY + VR D + +P L K G + V+++
Sbjct: 71 MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG---TGGIGFHAHVLKLGHG 127
Query: 115 ---FVQNALISTYCLCGEVDMARGIF 137
FV+NA+I Y G + AR +F
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVF 153
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ +H + I+L +C +T L +Y K GDL K+F + +V WN+MI GY
Sbjct: 283 VRTLHQKRIQL------NCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGY 336
Query: 63 SRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ---- 117
++ + ++ +++ + + D T + G+LE V+R +
Sbjct: 337 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH--LGALELGNWVVRFLTENQIK 394
Query: 118 ------NALISTYCLCGEVDMARGIF 137
NA+I Y CG ++ A+ +F
Sbjct: 395 LSISGHNAMIFMYSRCGSMEDAKRVF 420
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL+ + F + + SV WN M+ GY++ + + ++ +++ + + D T+ +
Sbjct: 209 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVIS 268
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +L + I + FV+ AL+ Y G++D AR +F
Sbjct: 269 ACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLF 318
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 27 RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86
R+ + GDL Y ++F ++ P+ F +NT+I+GY++ + + + ++ V D
Sbjct: 3 RFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPD 62
Query: 87 NYTFPFLFKGFTR----------------DIAGSLEKSCIVMRVFVQNALISTYCLCGEV 130
+TF FL K +R +I G++ K +FV+NALI Y G
Sbjct: 63 EFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNP 122
Query: 131 DMARGIF 137
+A +F
Sbjct: 123 VVAWRVF 129
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G+L+ VF ++ + V W TM+ YS+ + + +Y+ +L VR D T +
Sbjct: 150 AGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSV 209
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
T + ++++ V + NALI Y CG +D A +F
Sbjct: 210 ISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVF 261
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS + G + Q + Y K GD+ KVF ++ + ++ WN+MI GY
Sbjct: 137 RPIHSHVLVCGYDSDSFV--QAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYD 194
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQN----- 118
+ K V ++ + + V D+ TF + ++ +G+L+ C V V N
Sbjct: 195 QNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQ--SGALDLGCWVHDYIVNNSFDVN 252
Query: 119 -----ALISTYCLCGEVDMARGIF 137
+LI+ Y CG V AR +F
Sbjct: 253 VVLGTSLINMYTRCGNVSKAREVF 276
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + Y ++F IT P FL+N +IK S+ + +L Y ++ + + NYTF +
Sbjct: 65 GSILYTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVI 124
Query: 95 KGFTRDIAGSLEKSCIVMRV---------FVQNALISTYCLCGEVDMARGIF 137
K DI+ I V FVQ ALI+ Y G+V A+ +F
Sbjct: 125 KA-CADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVF 175
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+LK+I + I GL P + + G L Y +FR I P WN++I+G
Sbjct: 24 RLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRG 83
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTR--------DIAGSLEKSCIVM 112
+++ S + Y +L V D +TF F K R ++ GS+ ++
Sbjct: 84 FAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYER 143
Query: 113 RVFVQNALISTYCLCGEVDMARGIF-------------YMSCEDDDGLH-ELIRI 153
V V L+ Y G V++AR +F +SC G H E +R+
Sbjct: 144 DVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRV 198
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
VF + + + WN MI YS+ H+ + +Y + +V D +T L +
Sbjct: 167 VFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSH--V 224
Query: 103 GSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIF 137
G+L + R VFV NALI Y CG +D A +F
Sbjct: 225 GALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVF 269
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 35 GDLKYECKVFRKI-TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G L+ ++F I + VFLWN M+ Y++I ++ + ++ + K + ++YTF +
Sbjct: 500 GALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCI 559
Query: 94 FKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
K F + I G + K V N+LI+TY GEVD A +F D+
Sbjct: 560 LKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF-----DEL 614
Query: 146 GLHELIRIKA-----VDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVG 200
G +++ + V + E+ VQML L +G L + S A VG
Sbjct: 615 GDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILR---VGVDLATLVNSVAA---CANVG 668
Query: 201 NLEEGTPQEGR 211
+L G G+
Sbjct: 669 SLSLGRALHGQ 679
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 23 PKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
P + +Y K G ++ VF +I + WNTMI GYS+ +S N L ++
Sbjct: 791 PVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSK-NSLPNEALKLFAEMQK 849
Query: 82 DVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
+ R D T L R I G + ++ + V NALI Y CG + A
Sbjct: 850 ESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHA 909
Query: 134 RGIFYMSCEDD 144
R +F M E D
Sbjct: 910 RLLFDMIPEKD 920
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+L + F K+ Q +V W ++I Y R + + + ++ ++ V D Y+
Sbjct: 698 MYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYS 757
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ RD+ + K+ + + + V NAL+ Y CG ++ A +F
Sbjct: 758 MTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVF 813
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H ++ G+ KP+ L LY G + ++F K + SV WN MI GY+
Sbjct: 48 KQVHEHILRCGV--KPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYA 105
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ ++ + + + D +TF + + R+I + ++ +
Sbjct: 106 HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT 165
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NALIS Y CG V AR +F
Sbjct: 166 VGNALISMYAKCGSVRDARRVF 187
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH++ K GL++ + +Y K G +K +VF ++ + V W T++ Y+
Sbjct: 351 KEIHARAAKDGLVSDVRFGNA--LINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA 408
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
D + +L+ V+ + T+ + K + ++I + K+ ++ +
Sbjct: 409 DCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLA 468
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+S Y CG V+ A +F
Sbjct: 469 VTNALMSMYFKCGSVEDAIRVF 490
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL--LYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
KQIH+ ++ ++ H + L +Y K G K +VF ++ V WNTMI+G
Sbjct: 250 KQIHAHIVE----SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRG 305
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMR 113
+ + + +L+ V D T+ + R +I K +V
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSD 365
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V NALI+ Y G + AR +F
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVF 389
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y VF I +P++ +WNTM +G++ + + +Y+ ++ + ++Y+FPFL K
Sbjct: 23 LPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKS 82
Query: 97 FTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I G + K + ++V +LIS Y G ++ A +F
Sbjct: 83 CAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVF 131
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G K K+F +I + WN MI GY ++K + +Y +++K++V+ D T
Sbjct: 151 SRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVT 210
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + +E + V NAL+ Y CGE++ A +F
Sbjct: 211 VVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLF 263
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+++ C++F+ + WNT+I G++ ++ +K + ++ ++L+S ++ T
Sbjct: 249 MYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVT 308
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 309 MLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVF 366
>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 788
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 20 PHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78
PH +T L +Y K G +K KVF ++T ++ WN MI Y + + + ++LDL
Sbjct: 345 PHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDL 404
Query: 79 LKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF-----------VQNALISTYCLC 127
L + D +T + F + L + C M + + NA++ Y C
Sbjct: 405 LNQPLYPDYFTMSAVVPAF---VLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARC 461
Query: 128 GEVDMARGIF 137
G+V +R IF
Sbjct: 462 GDVLSSREIF 471
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+HS I+LG + + +Y + GD+ ++F K+ V WNTMI
Sbjct: 429 LRQCRQMHSYIIRLGY--GENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMI 486
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
GY+ ++ + M+ ++ + +R + TF
Sbjct: 487 MGYAIHGQGRSALEMFSEMKCNGLRPNESTF 517
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y + ++ P+VF++N MIKG+ + + +Y+ +L+++V +YTFP L K
Sbjct: 30 MDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKA 89
Query: 97 --------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + G + ++ VFVQ +L+ Y G ++ + +F
Sbjct: 90 CGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVF 138
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL-YEK----GDLKYECKVFRKITQP--SVFLW 55
Q KQ+H+ I G L P L+L Y K G C +F + Q + FLW
Sbjct: 72 QTKQVHALGILNGFL--PRSVSLCASLILNYAKFQHPGSF---CSLFNQTFQNCRTAFLW 126
Query: 56 NTMIKGYS-RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVM 112
NT+I+ +S + +G Y +++ V+ D++TFPF+ K + DI +E +V
Sbjct: 127 NTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVF 186
Query: 113 R------VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFP 165
+ V+V N L+ Y CG ++ AR +F M D + +I + +V+ D E
Sbjct: 187 KLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARN 246
Query: 166 EYLVQML-ALPDTFMGEGLEVIPKSQAPREE 195
Y +L ++ + + ++P S A +E
Sbjct: 247 YYFWMILRSVIKPNLVSVISLLPISAALEDE 277
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 36/244 (14%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI------------TQ 49
+ + +IH IK G++ + TR +L + Y + R +
Sbjct: 19 YDVNKIHGGLIKTGIIKNSNLT--TRIVLAFAASRRPYLAEFARCVFHEYHVCSFSPGEM 76
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DI 101
FLWN +IK +S + +L++ +L++ V D ++ + K +R I
Sbjct: 77 EDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 136
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIR------IK 154
G L K+ + +F+QN LI Y CG + AR +F M D + +I +
Sbjct: 137 HGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLI 196
Query: 155 AVDDDLHELFPEYLVQMLALPDTFMG-----EGLEVIPK--SQAPREETPRVGNLEEGTP 207
+L +L P + +++ G EG+ + K ++ P ++ ++ +G
Sbjct: 197 ESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYV 256
Query: 208 QEGR 211
+ GR
Sbjct: 257 KHGR 260
>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
Length = 711
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
H Q K G+++ H L Y K GDL CK+F ++ WNTMI GY
Sbjct: 22 HCQAFKSGIIS--HIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGY-- 77
Query: 65 IDSHKNGVLMYLDLLKSDVRR----DNYTFPFLFKGFT---RDIAGSLEKSCIV-----M 112
++S G + LKS RR D YTF + KG R G S IV
Sbjct: 78 VESGNLGAAW--EFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQ 135
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V+ +AL+ Y C V+ A +F
Sbjct: 136 SVYAGSALLDMYAKCERVEDAYDVF 160
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+H K IH+QTIK G + T + + G Y ++F K+ P V W T+I
Sbjct: 241 LHHGKAIHTQTIKQGF-DESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIS 299
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
Y ++ ++ V + + KS V + YTF + + I G + + +V
Sbjct: 300 TYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVN 359
Query: 113 RVFVQNALISTYCLCGEVDMARGIFY 138
+ V N++I+ Y CG + A +F+
Sbjct: 360 ALSVANSIITLYSKCGLLKSASLVFH 385
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H ++K GL+ H + L+ +Y K G ++ C+VF K+ +V W +I G
Sbjct: 146 LHGFSVKSGLI---HSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG-------------FTRDIAGSLEKSCIV 111
+ G+L + ++ +S V D++TF K T+ I ++S
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESS-- 260
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV N L + Y CG+ D +F
Sbjct: 261 ---FVINTLATMYNKCGKPDYVMRLF 283
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 21/147 (14%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH ++LGL+ + LY K G LK VF IT+ + W+T+I YS
Sbjct: 346 EQIHGHVLRLGLVNALSVANSI--ITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYS 403
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS---LEKS--------CIVM 112
+ + YL ++ + + N F + GS LE+ CI +
Sbjct: 404 Q-GGYAKEAFDYLSWMRREGPKPN---EFALSSVL-SVCGSMALLEQGKQVHAHLLCIGI 458
Query: 113 --RVFVQNALISTYCLCGEVDMARGIF 137
V +A+IS Y CG V A IF
Sbjct: 459 DHEAMVHSAIISMYSKCGSVQEASKIF 485
>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q HS +KLG ++ + + +Y K G++ +F ++ Q +V WN++I GY
Sbjct: 90 QAHSTILKLGFISNVYICSAV--VDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLA 147
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
++ K + +++ +LK+ + ++ G ++ + G + K+ + V V
Sbjct: 148 VNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVV 207
Query: 117 QNALISTYCLCGEVDMARGIF 137
+L+ Y CG+VD +R +F
Sbjct: 208 GTSLVDMYSKCGDVDDSRLVF 228
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-----DLKYECKVFRKITQPSVFLWNTMIK 60
Q+H I+LGL + + + +Y K D K C V + WN +I
Sbjct: 292 QVHCCIIQLGLESNVYIAAT--LVTVYSKCSSSLEDFKKVCSVVMTCDNIA---WNAVIA 346
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTF----------PFLFKGFTRDIAGSLEKSCI 110
GYS++ H+ + + ++ ++ + D+YT FL +G + + + ++
Sbjct: 347 GYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEG--KAMHALIHRTGY 404
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + VQN L+S Y CG + ++ +F+ E D
Sbjct: 405 ISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHD 438
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H +K GL + T + +Y K GD+ VF + +V W +M+ GYS+
Sbjct: 191 QVHGLILKTGL--GYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQ 248
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--IAGSLEKSCIVMR------VFV 116
I+ + + +++ D+R + T+ L F+ ++ L+ C +++ V++
Sbjct: 249 IEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVYI 308
Query: 117 QNALISTYCLCGE 129
L++ Y C
Sbjct: 309 AATLVTVYSKCSS 321
>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
Length = 721
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH++ IK +P T +Y K GDL VF +I +V WN +I Y+
Sbjct: 159 REIHAR-IKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYA 217
Query: 64 RID-SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCI----------VM 112
+ SH + ++ + + VR TF + G D+ SLEK V
Sbjct: 218 QSGHSHHQALDLFEKMAEHGVRPCRATFVGVL-GACNDVT-SLEKIHARIVETGLQFDVR 275
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V VQNAL++ Y CG +++AR IF
Sbjct: 276 DVGVQNALLNMYAKCGSLEVARDIF 300
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 3 QLKQIHSQTIKLGL-LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIK 60
L++IH++ ++ GL Q L +Y K G L+ +FRK+ + N MI
Sbjct: 257 SLEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIA 316
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT-------------RDIAGSLEK 107
+++ K + ++ ++ + +D+ TF + + R + L +
Sbjct: 317 TFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGR 376
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
C + V V+ AL+S Y CG ++ A+ +F
Sbjct: 377 KCCLPNVVVETALVSMYGKCGTLEQAKAVF 406
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 20/144 (13%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
L ++S +++LG +L ++ + G+L VF K+++ ++F WN ++ GY
Sbjct: 121 LSSMNSLSVELG----------NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGY 170
Query: 63 SRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMR------ 113
++ + +Y +L V+ D YTFP + + G D+A E V+R
Sbjct: 171 AKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELD 230
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI+ Y CG+V AR +F
Sbjct: 231 IDVVNALITMYVKCGDVKSARLLF 254
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K H Q I+LGL T + +Y K G ++ CKVF +I + S+ WN MI
Sbjct: 18 KACHGQVIRLGLETDT--LTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCV 75
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF-----KG---FTRDIAGSLEKSCIVMRVF 115
+ + + ++L++ + +T + KG F R + K+ + VF
Sbjct: 76 QNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVF 135
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHE 162
V ALI Y CG ++ A +F E +D I V ++L+E
Sbjct: 136 VGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYE 182
>gi|91806812|gb|ABE66133.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 230
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y +F +I P++F++N +I+ +S Y +LKS + DN TFPFL K
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 97 FTR---DIAGSLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIF 137
+ + G S IV V+V+N+L+ Y CG + A IF
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIF 175
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 44 FRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103
F ++P VF+ N++I+ +S + +Y + + + +N+TFPFL K D G
Sbjct: 66 FTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLA-DFKG 124
Query: 104 SLEKSCIVMRV---------FVQNALISTYCLCGEVDMARGIF 137
E CI V +VQN+L++ Y CG++ + +F
Sbjct: 125 LSEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVF 167
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH +K + P Q L +Y K LK KVF + + +V W ++I GYS
Sbjct: 83 KKIHDHMLKSK--SHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYS 140
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ N + Y +L+S V D +TF + K G R + + KS +
Sbjct: 141 QNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHII 200
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIR-IKAVDDDLHEL--FPEYLVQM 171
QNALIS Y + A +F M+ D +I + +L L F E L Q
Sbjct: 201 AQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQG 260
Query: 172 LALPDTFM 179
+ LP+ F+
Sbjct: 261 VYLPNEFI 268
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K H Q + +Y K +L + VF ++ + W +MI G+S
Sbjct: 184 RQLHAHVLKSEF--GAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFS 241
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
++ + + ++L V N + F +F + R + G K + V
Sbjct: 242 QLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDV 301
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
F +L Y CG + AR +FY
Sbjct: 302 FAGCSLCDMYAKCGLLSCARVVFY 325
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL--LYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q+H +K GL +C L LY K G LK K+F + P V W+++I G
Sbjct: 489 NQVHCYALKTGL----NCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILG 544
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
Y++ + + ++ + + DV+ ++ TF
Sbjct: 545 YAQFGYGEEALKLFKTMRRLDVKPNHVTF 573
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK- 95
+ Y F + +P+VF++N MI+ + + YLD++++ V ++TF L K
Sbjct: 60 IDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKA 119
Query: 96 -------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGL 147
GF + G + K VFVQ AL+ Y G++ AR +F MS D
Sbjct: 120 CSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAW 179
Query: 148 HELIRIKAVDDDL---HELFPEYLVQMLA 173
+I + A D+ +LF E V+ A
Sbjct: 180 TTMISVHARTGDMSSARQLFDEMPVRNTA 208
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ QL QI +Q I G+ + + ++ G + + ++F K+++P +FL+N +I+
Sbjct: 27 LSQLLQIQAQLILHGIHYDLSSITKLTHKF-FDLGAVAHVRQLFNKVSKPDLFLFNVLIR 85
Query: 61 GYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIV---- 111
G+S K+ + +Y L K+++R DN+T+ F +R + L IV
Sbjct: 86 GFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVA 145
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+FV +A++ Y ++AR +F + E D L + + E V M
Sbjct: 146 SNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM 205
Query: 172 LALPDTFMGEGLEVIPKSQAPREE 195
L + +F L + + A +E
Sbjct: 206 LDVGLSFDSTTLATVLTAVAELQE 229
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 40 ECK---VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT------- 89
CK +F +I QP + +N MI GY+ ++ V ++ +LL S R ++ T
Sbjct: 265 SCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPV 324
Query: 90 -FPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
PF +R I K I+++ V AL + YC EV AR +F
Sbjct: 325 YLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--R 99
KVF + + LWNTMI G+SR ++ + +++D+L + D+ T + +
Sbjct: 169 KVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQ 228
Query: 100 DIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ + C+ + V+V LIS Y CG+ R +F
Sbjct: 229 EYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 38/242 (15%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSV------------ 52
++H++ I GL+ P+ TR +L + Y + R +
Sbjct: 9 NKMHARLITTGLIKNPNLT--TRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDP 66
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGS 104
+LWN +IK YS + +L++ ++++ V D ++ + K +R I G
Sbjct: 67 YLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGF 126
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD--------DGLHELIRIKAV 156
L K+ I +F+QN LI Y CG + AR +F + D DG + +K+
Sbjct: 127 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSA 186
Query: 157 DDDLHELFPEYLVQMLALPDTFMG-----EGLEVIPK--SQAPREETPRVGNLEEGTPQE 209
L +L P + +++ G +GL K S+ P ++ ++ G +
Sbjct: 187 -HKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKH 245
Query: 210 GR 211
GR
Sbjct: 246 GR 247
>gi|242091752|ref|XP_002436366.1| hypothetical protein SORBIDRAFT_10g001160 [Sorghum bicolor]
gi|241914589|gb|EER87733.1| hypothetical protein SORBIDRAFT_10g001160 [Sorghum bicolor]
Length = 523
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 31 LYEK-GDLKYECKVFRKI-TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY 88
+Y K GD+ + FR++ +V WNTM+ +R H + ++ ++ ++ VR D
Sbjct: 200 MYAKCGDVAAARQWFRRMPVAKTVVSWNTMLAALARAGEHGEALALFREMQRAGVRPDGA 259
Query: 89 TFPFLFKGFTRDIAGSLEKSCIV---MR---------VFVQNALISTYCLCGEVDMARGI 136
TF + + G+L+ V MR V V NAL+ Y CG VD A +
Sbjct: 260 TFVAVLGACAQ--LGALDTGRWVHAYMRRQPERDADAVVVSNALLDMYAKCGAVDQAAAV 317
Query: 137 F 137
F
Sbjct: 318 F 318
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK- 95
+ Y +VF KI P FLWNTMI+G R + Y + DN+T+ FL K
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 96 --GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
D+ G + C V++ VFV+N L+ Y + +++ A +F
Sbjct: 61 CGQLGSDLLGK-QIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLF 109
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH +K GL + H + + +Y D++ +F ++ + + WNT+I
Sbjct: 71 KQIHCNVLKHGL--EEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNV 128
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+K + ++ +L+S ++ D+ TF R + ++ + + V
Sbjct: 129 YCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVS 188
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAV---DDDLHELFPEYLVQM 171
V N+LI Y CG V+ A IF M + + +I A+ D+ ELF + L +
Sbjct: 189 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 248
Query: 172 LALPD--TFMG 180
LA P+ TF+G
Sbjct: 249 LATPNEVTFLG 259
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSR 64
QIH K+G ++ + + LY K D+ Y KVF +++Q + WN +I GY++
Sbjct: 439 QIHGLATKMGFVSDVFVG--SALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQ 496
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFV 116
+ + + D+ ++R + T + +++ G L + + V V
Sbjct: 497 DECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLV 556
Query: 117 QNALISTYCLCGEVD 131
N+LI+TY CG+++
Sbjct: 557 SNSLIATYAKCGDIN 571
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI-----TQPSVFLWNTM 58
++IH +K GL + + + + +Y K G +K +F I + + +WN M
Sbjct: 231 REIHGVVVKSGLDVEEYLV--SSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVM 288
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCI 110
I GY +L+++ ++ ++ D T LF F + I G + K +
Sbjct: 289 ISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGL 348
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAV 156
+ V+ AL+ Y CG++ IF S H LI AV
Sbjct: 349 KNNIRVETALLDMYLKCGDMGTGLKIFRRSQN-----HNLIMWSAV 389
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH K GL K + +T L +Y K GD+ K+FR+ ++ +W+ +I +
Sbjct: 337 KQIHGLIFKFGL--KNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCA 394
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + ++ + D D+ + + + I G K V VF
Sbjct: 395 QSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVF 454
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHELFPEY 167
V +AL+ Y C ++ ++ +F +S +D + LI A D+ E +
Sbjct: 455 VGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAF 507
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ QL QI +Q I G+ + + ++ G + + ++F K+++P +FL+N +I+
Sbjct: 27 LSQLLQIQAQLILHGIHYDLSSITKLTHKF-FDLGAVAHVRQLFNKVSKPDLFLFNVLIR 85
Query: 61 GYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIV---- 111
G+S K+ + +Y L K +++R DN+T+ F +R + L IV
Sbjct: 86 GFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVA 145
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+FV +A++ Y ++AR +F + E D L + + E V M
Sbjct: 146 SNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM 205
Query: 172 LALPDTFMGEGLEVIPKSQAPREE 195
L + +F L + + A +E
Sbjct: 206 LDVGLSFDSTTLATVLTAVAELQE 229
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 40 ECK---VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT------- 89
CK +F +I QP + +N MI GY+ ++ V ++ +LL S R ++ T
Sbjct: 265 SCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPV 324
Query: 90 -FPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
PF +R I K I+++ V AL + YC EV AR +F
Sbjct: 325 YLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--R 99
KVF + + LWNTMI G+SR ++ + +++D+L + D+ T + +
Sbjct: 169 KVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQ 228
Query: 100 DIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ + C+ + V+V LIS Y CG+ R +F
Sbjct: 229 EYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G LKY K+F +I +P V + N +++G ++ + V +Y ++ K V D YTF F+
Sbjct: 26 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K ++ G + + V+ +V+NALI + CG++ +A +F
Sbjct: 86 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELF 136
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F + T+ V WN MI GY K + ++ ++ + D T L +
Sbjct: 196 ELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA--V 253
Query: 102 AGSLE---------------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G LE S I + + NALI Y CG +D A +F
Sbjct: 254 LGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVF 304
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 53 FLWNTMIKGYSRIDSHKNG-----VLMYLDLLKSDVRRDNYTFPFLFKGFT--------R 99
FLWNT+I+ + + + G + +++ + V+ D +TFPFL + F R
Sbjct: 25 FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84
Query: 100 DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + + + FVQ +LIS Y G VDMAR +F
Sbjct: 85 SVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLF 122
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H + +H+Q ++ GL P QT + +Y G + +F + + +V W+ MI
Sbjct: 80 LHLGRSVHAQILRFGLAIDPFV--QTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMI 137
Query: 60 KGYSRIDSHKNGVLMYLD---LLKSDVRRDNYTFPFLFKGFTRDIAGSLE---------- 106
GY R +K + ++ + L +DVR + +T + R G+LE
Sbjct: 138 NGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGR--LGALEHGKWAHAYID 195
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + + V + ALI Y CG V+ A +F
Sbjct: 196 KCGMPVDVVLGTALIDMYAKCGSVEKATWVF 226
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+L VF ++ + ++F WN ++ GY++ + +Y +L V+ D YTFP +
Sbjct: 155 GNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVL 214
Query: 95 K--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ G ++ E V+R V V NALI+ Y CG+V+ AR +F
Sbjct: 215 RTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVF 265
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
Q + LY K GDL KVF KI + S+ WN+MI GY + K + ++ + ++ V
Sbjct: 149 QAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGV 208
Query: 84 RRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQN----------ALISTYCLCGEVDMA 133
D+ TF + G+ C V V N +LI+ Y CG V A
Sbjct: 209 EPDSATFVSVLSACAH--LGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKA 266
Query: 134 RGIF 137
R +F
Sbjct: 267 REVF 270
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 1 MHQLKQIHSQTIKLG------LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL 54
++ L Q+H+ I G LLTK L G + Y ++F + P FL
Sbjct: 25 LYLLHQVHAHIIVSGYGRSRSLLTK-------LLNLACAAGSISYTRQIFLAVPNPDSFL 77
Query: 55 WNTMIKGYSRIDSHKNGVL---MYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAG 103
+ ++IK S+ SH + Y ++ S+V NYTF + K R + G
Sbjct: 78 FTSLIKSTSK--SHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHG 135
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + V+VQ AL++ Y CG++ AR +F
Sbjct: 136 HVLVHGFGLDVYVQAALVALYGKCGDLINARKVF 169
>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
Length = 580
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+ + LGL + QT ++LY K G L K+F I SV WN MI GY +
Sbjct: 127 IHAHAVLLGLGSNRFV--QTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQN 184
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIV----MRVFVQ 117
+ +Y ++ + D+ TF + D+ ++K + M V +
Sbjct: 185 GLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLG 244
Query: 118 NALISTYCLCGEVDMARGIFYM 139
AL++ Y CG V+ AR F M
Sbjct: 245 AALVNMYARCGLVNKAREWFNM 266
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 1 MHQLKQIHSQTIKLGLL-------TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVF 53
+H LKQ+H+ ++ G T C + +L + KVF + P+VF
Sbjct: 43 LHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHF------SNLNFALKVFEYVPNPNVF 96
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSL 105
++N +IKG + + + Y ++ + R + +T+P LFK T + +
Sbjct: 97 VFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHV 156
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDD 158
K + V +++A I Y GEV+ AR + +DG ++I A+ D
Sbjct: 157 IKQGLSGDVHIRSAGIQMYGSFGEVEGARRML-----GEDGNSDVICFNAMID 204
>gi|147805255|emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera]
Length = 880
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQ H+Q + G + P+ QT LL+Y K G L+ KVF K+ + ++ WN +I
Sbjct: 452 ISQAKQTHAQILVHGFI--PNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILI 509
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIVM---- 112
Y+ + + ++ LK R D++T P +FK G G + S ++
Sbjct: 510 ASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFE 569
Query: 113 -RVFVQNALISTYCLCGE-VDMARGIFYMSCEDD 144
V V ++++ Y CG VD R MS D
Sbjct: 570 EYVVVGSSVLDFYEKCGGLVDAWRCFVNMSWRDS 603
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS I++G + + + L YEK G L + F ++ +WN MI G
Sbjct: 557 KMLHSWVIRIGF--EEYVVVGSSVLDFYEKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLG 614
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPF----------LFKGFTRDIAGSLEKSCIV-M 112
+ ++ + + D+L V+ D+ T P L KG ++I G + K+ I
Sbjct: 615 KACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKG--KEIHGQVVKNQIFGC 672
Query: 113 RVFVQNALISTYCLCG 128
V + N+LI Y CG
Sbjct: 673 EVAIGNSLIDMYAKCG 688
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G L +VF +I P +N +I+ YS + + +Y +L+ V + YTFPF
Sbjct: 46 SRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPF 105
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + R I + + +FV ALI Y C AR +F
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158
>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 812
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 12/174 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL-WNTMI 59
+ Q KQIH+ I LG+ P ++ + Y DL + ++ + + L WN +I
Sbjct: 108 LSQGKQIHAHIISLGIHQNPILV--SKLINFYASVDLLADAQIVAECSNSFDPLHWNMVI 165
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG------FTRDIA--GSLEKSCIV 111
Y + ++ + +Y +L V D+YT+P + K + +A ++++S I
Sbjct: 166 SLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIK 225
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELF 164
+FV NAL+ Y G++++AR +F M DD + +I A E F
Sbjct: 226 WSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAF 279
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL + +FRKI + + WN M+ G++ +D + + ++L+ V + T +
Sbjct: 378 DLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILP 437
Query: 96 GFTR--DIAGSLEKSCIVMR--------VFVQNALISTYCLCGEVDMARGIF 137
R ++ E C +++ + + N+L+ Y G+V AR +F
Sbjct: 438 LCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVF 489
>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+ I G + H T+ ++ Y K GD+ VF + + SV W M+ GYS+
Sbjct: 173 IHTHLITNGFGSDLHL--NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQN 230
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQ 117
+ +++ D+ V+ + +T+ + T + G ++K V +FV+
Sbjct: 231 GRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVK 290
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDD 144
+AL+ + CG+++ A +F E D
Sbjct: 291 SALVDFHSKCGKMEDASYLFGTMMERD 317
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 28/216 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK----GDLKYECKVFRKITQPSVFLWNTMIK 60
+ +H+Q GL P T +Y K GD + +VF ++ WN ++
Sbjct: 245 RAVHAQLAARGL--SPEALAATALANMYAKCRRPGDAR---RVFDRMPARDRVAWNALVA 299
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
GY+R + V M + + + D R D T + G R++ +
Sbjct: 300 GYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFD 359
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQ 170
+V V A++ YC CG VD AR +F M + + +I+ A + D E
Sbjct: 360 EQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATE-------- 411
Query: 171 MLALPDTFMGEGLEVIPKSQ-APREETPRVGNLEEG 205
LAL +GEG++V S A +G L+EG
Sbjct: 412 ALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY---EKGDLKYECKVFRKITQPSVFLWNTMIKG 61
+++H +++GL + + + +Y ++ DL + VF ++ + WN MI G
Sbjct: 448 RRVHELLVRIGL--ESNVNVMNALITMYCKCKRTDLAAQ--VFDELGYKTRVSWNAMILG 503
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCI---VMR----- 113
++ S ++ V ++ + +V+ D++T + DI+ L+ I +R
Sbjct: 504 CTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALA-DISDPLQARWIHGYSIRLHLDQ 562
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
V+V ALI Y CG V +AR +F
Sbjct: 563 DVYVLTALIDMYAKCGRVSIARSLF 587
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKN-GVLMYLDLL---KSDVRRDNYTFPFLFKGF 97
++ R I P+ F WN +I+ YS+ HK +L+Y ++ ++++ D +T+PF+ K
Sbjct: 36 QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95
Query: 98 T--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+ + + K + ++ N+LI Y CG ++ AR +F CE
Sbjct: 96 AYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCE 148
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 28/198 (14%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQ-PSVFLWNTMIKGY 62
KQ+H+ +KLG L C + G L+ KVF ++ + +V WN MI Y
Sbjct: 105 KQVHAHVLKLGFELDTYICNSLIHFYA--SCGYLETARKVFDRMCEWRNVVSWNVMIDSY 162
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC--- 109
+++ + ++M+ +++K D YT + + GSL K C
Sbjct: 163 AKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGG--LGSLSLGMWVHAFVLKKCDKN 219
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHELFPEYL 168
+V V V L+ YC CG +++A+ +F MS D + +I AV +Y
Sbjct: 220 VVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAAL-DYF 278
Query: 169 VQMLA----LPD--TFMG 180
V+M+ +P+ TF+G
Sbjct: 279 VRMVKVEKIVPNSITFVG 296
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L Q+H I GL KPH Y L +++ DL +F + P V LWN+MI+GY+
Sbjct: 21 LLQVHGSLIVSGL--KPHNQLINAYSL-FQRQDLSR--VIFDSVRDPGVVLWNSMIRGYT 75
Query: 64 RIDSHKN--GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE------------KSC 109
R H+ G Y+ K + D Y+F F K AGS++ +
Sbjct: 76 RAGLHREALGFFGYMSEEKG-IDPDKYSFTFALKA----CAGSMDFKKGLRIHDLIAEMG 130
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V++ AL+ YC ++ AR +F
Sbjct: 131 LESDVYIGTALVEMYCKARDLVSARQVF 158
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH ++ GL+ T + +Y K G+L+ ++F I V W+ MI Y +
Sbjct: 322 IHDYAVQQGLIGDVSVA--TSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQA 379
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMRVFVQN----- 118
H + ++ D+++ ++ + T + +G A L KS C ++ +++
Sbjct: 380 GQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETA 439
Query: 119 -ALISTYCLCGEVDMARGIF 137
A+IS Y CG A F
Sbjct: 440 TAVISMYAKCGRFSPALKAF 459
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IH ++GL + + T + +Y K DL +VF K+ V WNTM+ G ++
Sbjct: 121 RIHDLIAEMGLESDVYIG--TALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQ 178
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--C------IVMRVFV 116
+L++ D+ V D+ + L ++ LEKS C ++ + F+
Sbjct: 179 NGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSK-----LEKSDVCRCLHGLVIKKGFI 233
Query: 117 ---QNALISTYCLCGEVDMARGIF 137
+ LI YC C ++ A +F
Sbjct: 234 FAFSSGLIDMYCNCADLYAAESVF 257
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
L +IH+Q + G K + L + G L KVF IT PS +WN +IKG+
Sbjct: 42 NLAKIHAQIVVSGFSQKNYILNHLLSLYI-SFGSLGSAQKVFEDITAPSTTVWNQIIKGH 100
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRV 114
+R + K + ++ + + V + +T+ FL R I G + + +
Sbjct: 101 TRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNL 160
Query: 115 FVQNALISTYCLCGE 129
+V+ LI+ Y G+
Sbjct: 161 YVRTNLINLYANGGD 175
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G L +VF +I P +N +I+ YS + + +Y +L+ V + YTFPF
Sbjct: 46 SRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPF 105
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + R I + + +FV ALI Y C AR +F
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158
>gi|297819530|ref|XP_002877648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323486|gb|EFH53907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 786
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT---- 98
VF +I + +V + N MI+ Y ++ G+ +++ + V+ D+YTFP + K +
Sbjct: 1 VFDEIPERNVIIINVMIRSYVNNGFYREGIQVFVTMCSCHVKPDHYTFPCVLKACSCSGN 60
Query: 99 ----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMAR 134
+ I GS K + +FV N L+S Y CG + AR
Sbjct: 61 IVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 100
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +K H LL P T ++Y K +F K+ + S+ WN MI
Sbjct: 137 MESVKISHDAGTMASLL--PAVSNTTTENVMYVK-------DMFFKMGKKSLVSWNVMIG 187
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
Y + V +Y + D + + + I G +E+ ++
Sbjct: 188 VYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP 247
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
+ ++NALI Y CG +D AR +F
Sbjct: 248 NLLLENALIDMYAKCGCLDRARDVF 272
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTR-- 99
VF + + ++F WN +I YSR + + N + M++ ++ +S + DN+TFP + K
Sbjct: 139 VFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVS 198
Query: 100 ------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD-DGLHELIR 152
+ G + K+ +V VFV NAL+S Y G V A +F + E + + +IR
Sbjct: 199 EVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIR 258
Query: 153 IKAVDDDLHELFPEYLVQMLALPD 176
+ + D+ L E L QM+ D
Sbjct: 259 VFS-DNGLSEECFLLLGQMMEKDD 281
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
LK++H ++K + ++ Y K G L Y +VF I +V WN +I G
Sbjct: 410 NLKELHCYSLKQEFVHNNELVANA-FVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGG 468
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
YS+ + + Y + S + D +T L + +++ G + ++ +
Sbjct: 469 YSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERD 528
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
FV +L+S Y CGE+ A +F
Sbjct: 529 SFVYISLLSLYIHCGELSTAHVLF 552
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQI + +K G L +Y K G+++ ++F +I P W TMI
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGV--LDMYLKCGEMESARRIFNEIPSPDDVAWTTMI 1182
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G ++ + Y + S V+ D YTF L K + R I + K
Sbjct: 1183 SGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCA 1242
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+ Y CG ++ ARG+F
Sbjct: 1243 FDPFVMTSLVDMYAKCGNIEDARGLF 1268
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 5 KQIHSQTIKLGL---LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIK 60
KQIH ++ GL ++ +C + +Y K G + VF ++ + + WNTMI
Sbjct: 926 KQIHGIVVRSGLDQVVSVGNC-----LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMIS 980
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---------FTRDIAGSLEKSCIV 111
G + + V M++DLL+ + D +T + + I K+ +V
Sbjct: 981 GCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV 1040
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ FV LI Y G+++ A +F
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEAEFLF 1066
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL--WNTMI 59
H QIH+ +K G++ T + +Y K K E F + Q L WN M+
Sbjct: 1025 HLATQIHACAMKAGVVLDSFV--STTLIDVYSKSG-KMEEAEFLFVNQDGFDLASWNAMM 1081
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIVMR--- 113
GY + +Y+ + +S R + T K G G ++ +V R
Sbjct: 1082 HGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFN 1141
Query: 114 --VFVQNALISTYCLCGEVDMARGIF 137
+FV + ++ Y CGE++ AR IF
Sbjct: 1142 LDLFVISGVLDMYLKCGEMESARRIF 1167
>gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 404
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QL QIH+Q + L + H Q K + Y +F +++L+N +I+G
Sbjct: 50 QLHQIHTQILLHNLSSSSHITAQLISSSSLRKS-IAYSLSIFNSYHPKNLYLFNALIRGL 108
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL--------FKGFTRDIAGSLEKSCIVMRV 114
+ + + + ++ LL+SD++ D+ TF F+ KG R + G + + +
Sbjct: 109 TDNYRYLDSIDHFILLLRSDIKPDHLTFSFVLKSIASLSLKGLARALHGMILRCGLEFDS 168
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV+ +++ Y EV +A +F
Sbjct: 169 FVRISMVDVYVKLEEVKLALKVF 191
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
++ GDL+ + F ++ V W TM+ G+S+ H+ + ++ +L DV+ +++T
Sbjct: 244 FFKIGDLEQAIEHFDRMPVKDVVSWTTMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTI 303
Query: 91 PFLFKGFTRDIAGSLEKSCIVMRVF----------VQNALISTYCLCGEVDMARGIFYMS 140
+ G+LE + + V NAL+ + CG ++ A +F +
Sbjct: 304 VSALSACAK--IGALEAGLRIHKYLKDNGFRLNRAVGNALVDMHAKCGNINSASQVFKEA 361
Query: 141 CEDD 144
E D
Sbjct: 362 KEKD 365
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKI--TQPSVFLWN 56
+ Q+K IH + + G+LT T +L+ G L + + R+ + V+ WN
Sbjct: 41 ISQVKLIHQKLLSFGILTL----NLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWN 96
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIAGSLEKSC------ 109
++I+ Y + N L L+ S DNYTFPF+FK + +S
Sbjct: 97 SLIRSYGD-NGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 110 --IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ VFV NAL++ Y C + AR +F
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVF 185
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRD 100
KVF +++ V WN++I+ Y+++ K + M+ + R DN T +
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASL 242
Query: 101 IAGSLEK--------SCIVMRVFVQNALISTYCLCGEVDMARGIFY-MSCED 143
SL K S ++ +FV N L+ Y CG +D A +F MS +D
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKD 294
>gi|449453543|ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449515851|ref|XP_004164961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 308
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H LKQIH+ TI L + H +T+ Y L +F T+ +L+NT+I
Sbjct: 24 LHTLKQIHALTITLHI--SHHHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLFNTLI 81
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+ +S + + ++ +L S D +T P + K T R + G+L +
Sbjct: 82 RAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGALLINGFS 141
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ NALI+ Y CG++ +AR +F
Sbjct: 142 ADLPSLNALITMYGKCGDLGVARKVF 167
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+ + + K+G T T YL L KG+ ++F ++ S+ WN MI GY++
Sbjct: 261 KQVQAFSFKIGCETNLPVKNSTMYLYL-RKGETDEAMRLFEQMEDASIITWNAMISGYAQ 319
Query: 65 I-DSHKN----------GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSL 105
I DS K+ + ++ DL +S ++ D +TF + + +A
Sbjct: 320 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQT 379
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
KS + V V +AL++ Y CG + A F
Sbjct: 380 IKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 411
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH+QTIK G L+ + + +Y K G ++ K F ++ + W +MI
Sbjct: 369 LEQGEQIHAQTIKSGFLSD--VVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMI 426
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS 108
GYS+ + + ++ ++ + VR + TF L + AG +E++
Sbjct: 427 SGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS--YAGLVEEA 473
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M+ KQ+ K+G T T YL L KG+ + ++F ++ SV WN MI
Sbjct: 297 MNLGKQVQGFCFKIGCATNLPVKNSTMYLYL-RKGETEEAMRLFEEMEDNSVITWNAMIS 355
Query: 61 GYSRI-DSHKN----------GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA------- 102
G+++I DS K+ + ++ DL++S ++ D +TF + + +A
Sbjct: 356 GFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQI 415
Query: 103 -GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K+ + V V +AL++ Y CG ++ A F
Sbjct: 416 HAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAF 451
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH+QTIK G L+ + + +Y K G ++Y K F ++ ++ W +MI
Sbjct: 409 LEQGEQIHAQTIKTGFLSD--VVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMI 466
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF 115
GYS+ + + ++ D++ + + + TF L + AG +E++ MR F
Sbjct: 467 SGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACS--YAGLVEEA---MRYF 517
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H TIK G + LY K G+L+ + F++I +V W TMI +
Sbjct: 199 KQVHGYTIKYGAASITSIGNS--LCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACA 256
Query: 64 RIDSHKN-GVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRV 114
+++ G+ ++LD+LK +V + +T + + + G K +
Sbjct: 257 EDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNL 316
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V+N+ + Y GE + A +F
Sbjct: 317 PVKNSTMYLYLRKGETEEAMRLF 339
>gi|255558956|ref|XP_002520501.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540343|gb|EEF41914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 383
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH+Q + +G + + + + L+LY K GDLK F + S+ WN MI GY
Sbjct: 28 RRIHAQMVVVGYVANEYL--KNKLLILYAKSGDLKTAHMFFDNLMDKSLISWNAMIAGYV 85
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + G+ +Y + ++ + D YTF F+ + G + K + V
Sbjct: 86 QSGLEEIGLSLYYKMRQNGLTPDQYTFASAFRACAALATLQHGKKAHGVMIKCNLRENVV 145
Query: 116 VQNALISTYCLCGEV 130
V +ALI Y C +
Sbjct: 146 VNSALIDMYFKCSSL 160
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L+QIH++ I GL + + Y ++F I +P FL++++I S
Sbjct: 35 LQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTS 94
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIV------MRVF 115
+ + +L Y +L +++ NYTF + K A S+ ++ C V + +
Sbjct: 95 KFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAY 154
Query: 116 VQNALISTYCLCGEVDMARGIF 137
VQ AL+S Y G V +AR +F
Sbjct: 155 VQAALVSFYAKSGHVMIARKVF 176
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
Q + Y K G + KVF K+ + +V WN+MI GY + K V ++ + V
Sbjct: 156 QAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGV 215
Query: 84 RRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
+ D+ TF L G + + ++C + V + AL++ Y CG V AR
Sbjct: 216 KPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKARE 275
Query: 136 IF 137
+F
Sbjct: 276 VF 277
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--R 99
KVF + + LWNTM+ G + +L++ D++K + D+ T + G +
Sbjct: 162 KVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQ 221
Query: 100 DIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
D+A + C+ M+V +V L Y CGE++ AR +F
Sbjct: 222 DLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLF 265
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 1 MHQLKQIHSQTIKLG----LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
+HQL Q H+Q I G L+T + +L ++ L +F I P +FL+N
Sbjct: 23 LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASL-----LFSTIPNPDLFLYN 77
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR-- 113
+I+ +S +S + V +Y L KS + DN+T+ F+ G + G L + ++
Sbjct: 78 VLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGF 137
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV +A+++ Y V AR +F
Sbjct: 138 GSDLFVGSAIVACYFKFSRVAAARKVF 164
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
I +K+G H T LY K G+++ +F +I QP + +N MI GY+
Sbjct: 229 IQCLAMKVGF--HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCN 286
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYT--------FPFLFKGFTRDIAGSLEKSCIVMRVFVQ 117
+ ++ V ++ +LL S + ++ + FPF TR I G KS +V V
Sbjct: 287 NETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS 346
Query: 118 NALISTYCLCGEVDMARGIFYMSCE 142
AL + Y E++ AR +F S E
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSE 371
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
+F + ++ S+ WN MI GY++ + + ++ ++ K +VR + T + + A
Sbjct: 365 LFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGA 424
Query: 103 GSLEKSC--IVMR------VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
SL K ++ R +FV ALI Y CG + A+ +F M E +
Sbjct: 425 LSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKN 474
>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--R 99
KVF + + LWNTM+ G + +L++ D++K + D+ T + G +
Sbjct: 162 KVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQ 221
Query: 100 DIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
D+A + C+ M+V +V L Y CGE++ AR +F
Sbjct: 222 DLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLF 265
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 1 MHQLKQIHSQTIKLG----LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
+HQL Q H+Q I G L+T + +L ++ L +F I P +FL+N
Sbjct: 23 LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASL-----LFSTIPNPDLFLYN 77
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR-- 113
+I+ +S +S + V +Y L KS + DN+T+ F+ G + G L + ++
Sbjct: 78 VLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGF 137
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV +A+++ Y V AR +F
Sbjct: 138 GSDLFVGSAIVACYFKFSRVAAARKVF 164
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
I +K+G H T LY K G+++ +F +I QP + +N MI GY+
Sbjct: 229 IQCLAMKVGF--HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCN 286
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYT--------FPFLFKGFTRDIAGSLEKSCIVMRVFVQ 117
+ ++ V ++ +LL S + ++ + FPF TR I G KS +V V
Sbjct: 287 NETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS 346
Query: 118 NALISTYCLCGEVDMARGIFYMSCE 142
AL + Y E++ AR +F S E
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSE 371
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 34/200 (17%)
Query: 3 QLKQIHSQTIKLGL------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
+L QIH+Q +KLGL LTK + + Y + + + +++ FL+N
Sbjct: 47 KLTQIHTQILKLGLSNNPLVLTKYTSTSSNLHAIDYASSFI-FSPESDKRLYDT--FLFN 103
Query: 57 TMIKGYSRIDSHKNG--VLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLE 106
T+I+ Y+ ++ G + MY +L+ DV + +T+PF+ K + + GS+
Sbjct: 104 TIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVL 163
Query: 107 KSCIVMRVFVQNALISTYCLCGE--VDMARGIFYMSCEDD--------DGLHELIRIKAV 156
K V VQN ++ YC CG ++ AR +F C+ D G L R
Sbjct: 164 KFGFDNDVHVQNTMVHMYC-CGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRC--- 219
Query: 157 DDDLHELFPEYLVQMLALPD 176
D +LF E ++ + PD
Sbjct: 220 -SDAIDLFREMQIEGVCRPD 238
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H +K G H ++ + +++ +VF ++ + W+ MI GY+R
Sbjct: 156 KSVHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYAR 215
Query: 65 IDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + ++ ++ ++ R D T + T + + +EK + V
Sbjct: 216 LGRCSDAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVE 275
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ NALI + CG+VD A +F
Sbjct: 276 LCNALIDMFAKCGDVDKAIKLF 297
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G Y +F T P + L+NT IK S+ S N + +Y + +R D+Y+ P +
Sbjct: 70 GLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVL 129
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K R I S + M V V +LI Y CG V AR +F
Sbjct: 130 KAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLF 180
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+LK KVF ++ Q +V W T+I GY++ + + ++ + +V D +
Sbjct: 202 GELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVL 261
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I +EK + V + NALI Y G + A +F
Sbjct: 262 SACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVF 312
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+ + + K+G T T YL L KG+ ++F ++ S+ WN MI GY++
Sbjct: 301 KQVQAFSFKIGCETNLPVKNSTMYLYL-RKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359
Query: 65 I-DSHKN----------GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSL 105
I DS K+ + ++ DL +S ++ D +TF + + +A
Sbjct: 360 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQT 419
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
KS + V V +AL++ Y CG + A F
Sbjct: 420 IKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH+QTIK G L+ + + +Y K G ++ K F ++ + W +MI
Sbjct: 409 LEQGEQIHAQTIKSGFLSD--VVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMI 466
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS 108
GYS+ + + ++ ++ + VR + TF L + AG +E++
Sbjct: 467 SGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS--YAGLVEEA 513
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 23 PKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
P TR L + + G ++ ++F ++ + F+WN MIKG++ + + +Y ++ S
Sbjct: 61 PALTRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFS 120
Query: 82 DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTY 124
V+ D++T+PF+ K T + I + K V V+V N+LIS Y
Sbjct: 121 GVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLY 171
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH ++ G L PH T + +Y E G LK +F +I + ++ WN++I Y
Sbjct: 346 RTIHGYAMRRGFL--PHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYV 403
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + + ++ L S + D+ T + + R I + KS
Sbjct: 404 QNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTI 463
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ N+L+ Y +CG+++ AR F
Sbjct: 464 ILNSLVHMYAMCGDLEDARKCF 485
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
K+IH+ IKL ++ + + LY K ++ KVF ++ + + WN+MI GY
Sbjct: 146 KKIHAMVIKLRFVSDVYVCNSL--ISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYL 203
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR-------V 114
++ ++++ ++LK + D ++ + + ++ K C +R V
Sbjct: 204 ALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDV 263
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V +++ Y GEV A IF
Sbjct: 264 MVMTSILDMYSKYGEVSYAERIF 286
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGS 104
FLWN +IK +S + +L + +L++ + D ++F + K +R I G
Sbjct: 88 FLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACSRLGFLKGGMQIHGF 147
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L K+ I +F+QN LI Y CG + AR IF
Sbjct: 148 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIF 180
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK--VFRKITQPSVFLWNTMIKGY 62
KQIH++ +K G + +T+ ++ Y K D +E +F K+ +V+ W +I
Sbjct: 84 KQIHARILKNGDFYARNEYIETKLVIFYSKCD-SFEVAEVLFSKLRVRNVYSWAAIIGLK 142
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
RI + ++ ++++ + + DN+ P + K F R + G + KS V
Sbjct: 143 CRIGLCEGALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSRFGRGVHGYVVKSGXDDCV 202
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV ++L Y CG +D AR +F
Sbjct: 203 FVASSLADMYGKCGVLDDARKVF 225
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 78 LLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGE 129
+L++ DNY+FPF+ K R +I S K + + VFVQNALIS + CG
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 130 VDMARGIFYM 139
V+ AR +F M
Sbjct: 61 VEAARAVFDM 70
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 26/143 (18%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--- 98
KVF +I + W +MI GY++ D K + ++ ++ D T +
Sbjct: 99 KVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWG 158
Query: 99 -----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY--------------- 138
R I E++ I M + +NALI Y CG++ A IF+
Sbjct: 159 ALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVIS 218
Query: 139 ---MSCEDDDGLHELIRIKAVDD 158
M+ E D LH +++ + D
Sbjct: 219 GLAMNGESDKALHLFSQMEMISD 241
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK------ 95
VF K+ + ++F WN ++ Y+R + ++ + ++ +L+ ++ + DN+T P + K
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 222
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
G + I G K +V VFV NALI+ Y CG V+ A
Sbjct: 223 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEA 262
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC--KVFRKITQPSVFLWNTMIKGYSR 64
IH K+ L++ + +Y K L E +VF + +V WN ++ GY++
Sbjct: 230 IHGMATKMDLVSDVFVGNA--LIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
+ + +YL + S + D +T L +R +I G ++ + + F+
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347
Query: 117 QNALISTYCLCGEVDMARGIF 137
+L+S Y CG+ A+ +F
Sbjct: 348 GISLLSLYICCGKPFAAQVLF 368
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKG 61
Q KQ+H++ I + P ++ + LY K + L + VF +I + F +N M+
Sbjct: 42 QAKQLHARLILFSV--TPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLIS 99
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----------RDIAGSLEKSCIV 111
YS + H + + ++ L S++ +N + L K + +++ G + ++
Sbjct: 100 YSLHNRHGDALDLFSSLASSNLV-NNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFD 158
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV+NALI+ Y C ++D++R +F
Sbjct: 159 ADVFVENALITYYSKCYDLDLSRKVF 184
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLF 94
DL KVF ++T+ V WN+MI GYS+ +++ +Y +++ S R + T +
Sbjct: 176 DLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVL 235
Query: 95 K--GFTRDIAGSLE------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
+ G T+D+A +E + + + + V NALI Y CG +D AR +F E D+
Sbjct: 236 QACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDE 294
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+ + + K+G T T YL L KG+ ++F ++ S+ WN MI GY++
Sbjct: 301 KQVQAFSFKIGCETNLPVKNSTMYLYL-RKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359
Query: 65 I-DSHKN----------GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSL 105
I DS K+ + ++ DL +S ++ D +TF + + +A
Sbjct: 360 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQT 419
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
KS + V V +AL++ Y CG + A F
Sbjct: 420 IKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +QIH+QTIK G L+ + + +Y K G ++ K F ++ + W +MI
Sbjct: 409 LEQGEQIHAQTIKSGFLSD--VVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMI 466
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS 108
GYS+ + + ++ ++ + VR + TF L + AG +E++
Sbjct: 467 SGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS--YAGLVEEA 513
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGS 104
FLWN +IK +S K ++ + +L++ V D ++ + K +R I G
Sbjct: 62 FLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGF 121
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI------RIKAVD 157
L K+ I +F+QN LI Y CG + AR IF M D + +I +
Sbjct: 122 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSA 181
Query: 158 DDLHELFPEYLVQMLALPDTFMG-----EGLEVIPK--SQAPREETPRVGNLEEGTPQEG 210
+L +L P+ + +++ G +G+ + K ++ P ++ +L +G + G
Sbjct: 182 RELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHG 241
Query: 211 R 211
R
Sbjct: 242 R 242
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGS 104
FLWN +IK +S + +L++ +LK+ V D ++ + K GF ++ G
Sbjct: 89 FLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGF 148
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
L K+ I +F+QN LI Y CG + AR +F MS D + +I
Sbjct: 149 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMI 196
>gi|356510408|ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 481
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRK-ITQPSVFLWNTMIKGYS 63
Q H+Q+ GLL P+ +T LL+Y K G L+ KVF K + + +++ WN MI Y+
Sbjct: 27 QCHAQSFVQGLL--PNAVLETDLLLVYSKLGLLRKARKVFDKMLDRRNMYSWNIMIASYA 84
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMRV------F 115
+ + + ++++ + +R D+YT P LFK + C +V+R+
Sbjct: 85 QHCMYYDVLMVFHEFKHCCLRPDHYTLPPLFKASVGVDDACIGSMCHGLVIRIGYEGYAI 144
Query: 116 VQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELI----RIKAVDDDLHELFPEYL-- 168
V N+L+ Y G + A +F MSC+D + +I R D +H F E L
Sbjct: 145 VANSLLEFYVKFGAMPQAFCVFSNMSCKDSVTWNLMISGFGRAGLYSDAMH-CFREMLSL 203
Query: 169 -----VQMLALPDTFMGEGLE 184
V + LP G E
Sbjct: 204 NEMMRVDFMTLPSVINACGKE 224
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFKGFTR- 99
VF ++ WN MI G+ R + + + + ++L + +R D T P + +
Sbjct: 165 VFSNMSCKDSVTWNLMISGFGRAGLYSDAMHCFREMLSLNEMMRVDFMTLPSVINACGKE 224
Query: 100 -DIAGSLEKSCIVMRVF-------VQNALISTYCLCGEVDMARGIF 137
D+ E V+R F + NALI YC CG ++ + IF
Sbjct: 225 GDLLKVREVHGYVVRSFGFDADAAIGNALIDVYCKCGCLNDSEKIF 270
>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 598
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +H+ IK G ++ + + LY K GDL+ +VF + + +V LW +MI GY+
Sbjct: 268 KGVHALLIKSGFESEQ--DLMSSLVNLYAKCGDLEAAQEVFDAVHRKNVVLWTSMISGYA 325
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF----TRDIAGSLEKSCIVMR----VF 115
+ M+ +L +DV + T + + + A +E + + +
Sbjct: 326 EGGHPDKALKMFDSMLCTDVEPNEATVSSVLSACANLGSANQAKKVEDHVVAIGLQKDLR 385
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V LI TYC CG V +AR IF
Sbjct: 386 VATGLIDTYCKCGNVTLAREIF 407
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ IK L P +TR L+ Y K D L+ KV ++ + +V W MI YS
Sbjct: 71 QRVHAHMIKTRYL--PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 128
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + ++ ++++SD + + +TF + R I G + K +F
Sbjct: 129 QTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIF 188
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y G+++ AR IF
Sbjct: 189 VGSSLLDMYAKAGQIEEAREIF 210
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQIH+ IK G + H + L +Y K GD+ VF I+ P W +MI
Sbjct: 408 LDQGKQIHAHAIKAGFDSDLHV--NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMI 465
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G + + +Y + +S V D YTF L K + R + ++ K V
Sbjct: 466 SGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 525
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+ Y CG ++ A +F
Sbjct: 526 SDPFVGTSLVDMYAKCGNIEDAYRLF 551
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H IK+GL + +Y K G ++ +F + + V LWN M+KGY ++
Sbjct: 205 VHGYAIKIGLEWDVFVSGA--LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----------FTRDIAGSLEKSCIVMRVF 115
K ++ + +S +R D ++ + G + + G KS + V
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+L++ Y G AR +F
Sbjct: 323 VANSLVNMYSKMGCAYFAREVF 344
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+H+ IKL ++ P T + +Y K G+++ ++F+K+ ++ LWN M+
Sbjct: 509 LEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAML 566
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
G ++ + + V ++ + + D +F
Sbjct: 567 VGLAQHGNAEEAVNLFKSMKSHGIEPDRVSF 597
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
KQ+H +K GL + +Y K Y + VF + + WN+MI +
Sbjct: 306 KQVHGIAVKSGL--DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 363
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE-------------KSCI 110
+ + V +++DLL ++ D++T + G L K+
Sbjct: 364 QSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGF 423
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
+ V + ++ Y CG++ A +F Y+S DD +I
Sbjct: 424 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMI 465
>gi|255579533|ref|XP_002530609.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529857|gb|EEF31789.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q H+Q IK+G T + +Y DL KVF ++ + WNTMI Y++
Sbjct: 318 QFHAQAIKMGFEASTSLSNAT--ITMYSSCKDLHAARKVFERLERKDPVSWNTMISSYTQ 375
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG-----FTRDIAGSLEKSCIVMRVFVQNA 119
+ + +L YL++ ++ D +TF L I + ++ ++ + V NA
Sbjct: 376 GNFGRLAILAYLEMRRTGTEPDEFTFGSLLASSELLETVEMIHALVFRNSLISNIQVSNA 435
Query: 120 LISTYCLCGEVDMARGIF 137
L S Y G ++ + IF
Sbjct: 436 LASAYSKHGNMEQSYQIF 453
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + Y C +F + Q V +WN +I G + + G+ + D+ +S VR DNY+ +
Sbjct: 146 GHVDYACVLFDVMPQRDVVVWNALITGCMESGNEEIGLNYFRDMCRSGVRHDNYSLASVL 205
Query: 95 KG-------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEV 130
G F + + KS ++ V NALI+ Y C V
Sbjct: 206 SGCKLVMVNFGMQVHSLVIKSGSLVEPSVINALITMYFNCENV 248
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 3 QLKQIHSQTIKLGLLT-KPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIK 60
++KQ+H+Q + GLL P C + R L Y + Y +F +I P VF++NTMI+
Sbjct: 28 EVKQLHAQFVVSGLLGYHPLCAR--RLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIR 85
Query: 61 GY--------------SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE 106
G S + + G ++ ++K+ + D + L +T +GS++
Sbjct: 86 GLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTN--SGSID 143
Query: 107 KSCIVMRVF------VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
+ V+ F +NA+IS Y G VD AR +F M+ +D LI
Sbjct: 144 DAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALI 195
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 2 HQLKQIHSQTIKLGLLTKP--HCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
H L QIH+ ++ GL P + Q Y L G L + +F + P+VFLW +I
Sbjct: 37 HHLLQIHAALLRRGLHHHPILNFKLQRSYASL---GHLHHSVTLFHRTPNPNVFLWTHII 93
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM----RVF 115
++ D + + Y +L ++ + +T L K T A ++ I ++
Sbjct: 94 NAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLY 153
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V L+ Y G+V A+ +F
Sbjct: 154 VSTGLVDAYARGGDVASAQKLF 175
>gi|357156964|ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 710
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK--GYSR 64
IH++ + LG+ T P T L + L Y +VF V++WNT+++ +S
Sbjct: 171 IHARAVVLGIATNP--AFATSLLAVAAPCSLAYARRVFDAAPHRDVYMWNTLLRVHAHSH 228
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
+ + + +Y + + V D+YT+P + R G + + FV
Sbjct: 229 AEPQSSALSLYKRMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALAGDCFV 288
Query: 117 QNALISTYCLCGEVDMARGIF 137
+ALI+ YC G+V A +F
Sbjct: 289 HSALIAMYCQDGDVADAEQVF 309
>gi|357447967|ref|XP_003594259.1| Thymidine kinase [Medicago truncatula]
gi|355483307|gb|AES64510.1| Thymidine kinase [Medicago truncatula]
Length = 644
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++IH+ I +G + P+ + + L+LY K G L+ +F + + F WN MI GY
Sbjct: 191 RRIHAHMIIVGYV--PNEYLKIKLLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIAGYV 248
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + G+ + ++ ++ +R D YTF +F+ R G + K I V
Sbjct: 249 QKGLEEVGLETFYEMRQASLRPDQYTFASVFRACATLALLEPGRQAHGVMLKCQIGDNVV 308
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +ALI Y C + R +F
Sbjct: 309 VNSALIDMYFKCSCICDGRLLF 330
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 3 QLKQIHSQTIK----LGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI--TQPSVFLWN 56
+L+Q+H+Q IK L +L P L+ Y ++F+ + +P F+WN
Sbjct: 43 ELRQVHAQIIKTNAPLSIL-----PLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWN 97
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKS 108
+ +K + DS + ++++ L + DV D +T + + R + G +EK
Sbjct: 98 SCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKV 157
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+++QN ++ Y CGE+ AR +F
Sbjct: 158 GFRSNLYLQNMIVHLYASCGEMGEARLLF 186
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H KQIH+Q + LGL ++ + +Y K G L F ++ S W +I
Sbjct: 551 VHIGKQIHAQLVLLGLASEDLLGNA--LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 608
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
GY + H+ + ++ D+ ++ +R D TF + K G R + L +S
Sbjct: 609 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 668
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VF + L+ Y CG +D A F
Sbjct: 669 SSVFSGSVLVDMYAKCGCLDEALRTF 694
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
KQIH +K G+ L+ H QT L +Y + L + KVF +I QP V W+ ++ GY
Sbjct: 136 KQIHCWVVKNGVFLSDSHV--QTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGY 193
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-----------EKSCIV 111
R G+ ++ ++L + D ++ + G+L +KS I
Sbjct: 194 VRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQ--VGALAQGKWIHEFVKKKSWIE 251
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y CG ++ A +F
Sbjct: 252 SDVFVGTALVDMYAKCGCIETAVEVF 277
>gi|317106604|dbj|BAJ53111.1| JHL07K02.1 [Jatropha curcas]
Length = 248
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD----------LKYECKVFRKITQP 50
+H L Q+H+ I G L+ ++ +LY L+Y VF IT P
Sbjct: 24 IHHLHQLHANAITNGFLSLNSSSQKILTKILYSLNATATSKSSTSLLQYAVSVFSAITNP 83
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLE 106
S F +N +I+ ++ S + + +L + + + D ++FPF+FK ++ +A SL
Sbjct: 84 SPFCYNLVIRAHTLHSSPLSALRFFLQMRRFSIPPDFHSFPFVFKACSQLRVFFLANSLH 143
Query: 107 ----KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDD 158
K + ++V N+LI Y + + A +F D+ +++ AV D
Sbjct: 144 SQAFKFGFMSDLYVVNSLIHVYSVSDRLCDAYQVF-----DESPRKDVVSYNAVID 194
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 28/153 (18%)
Query: 3 QLKQIHSQTIKLGL----------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSV 52
L+Q+H+ I GL +++ H T L Y VF ++ PS
Sbjct: 44 HLEQVHACIIHRGLEQDHFLVFLFISRAHTLLST----------LSYASSVFHRVLAPST 93
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGS 104
LWNT+IK + + + + + + + D++T+P + K + + + GS
Sbjct: 94 VLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGS 153
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + ++V +LI Y CGE+ AR +F
Sbjct: 154 AFRCGVDQDLYVGTSLIDMYGKCGEIADARKVF 186
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
GD++ ++F+ + SV W TMI GYS+ + + M+L + K +VR + T +
Sbjct: 90 GDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASV 149
Query: 94 FKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + G+LE + ++ ++V N L+ Y CG++D AR +F
Sbjct: 150 FSACAK--LGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVF 201
>gi|218198581|gb|EEC81008.1| hypothetical protein OsI_23770 [Oryza sativa Indica Group]
Length = 275
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH++ + +G + T+ L+ Y K G+L KVF + Q SV WN MI G +
Sbjct: 47 KRIHARMVSVGFGGGVYIV--TKLLIFYVKIGELGVARKVFDGMPQRSVVAWNAMISGCA 104
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCI----- 110
R + V M+ + +R D +TF + R A G + KS +
Sbjct: 105 RGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGCGGG 164
Query: 111 --VMRVFVQNALISTYCLC 127
VFV +AL+ Y C
Sbjct: 165 GGGGNVFVDSALVDMYLKC 183
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK-YECKVFRKITQPSVFLWNTMI 59
+ Q Q+H+ +K GL T P + LY K L + +VF + + S W+++I
Sbjct: 41 LRQGLQLHAHILKFGLQTIPLVSHN--LINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTR--DIAGSLEKSCIVMR-- 113
+++ ++ + + +L VR D++ +P K GF R D+ S+ C+ ++
Sbjct: 99 SAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVH--CLAVKTG 156
Query: 114 ----VFVQNALISTYCLCGEVDMAR---------------GIFYMSCEDDDGLHELIRIK 154
VFV ++L+ Y CGE+ AR G+ Y + DDG+ L K
Sbjct: 157 YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFK 216
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E GD ++ +F ++ + +V W+ MI GY+++D + ++ L DV +++TF
Sbjct: 176 EIGDARH---LFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSS 232
Query: 93 LFKGFTRDIAGSLEK----SCIVMRV----FVQNALISTYCLCGEVDMARGIF 137
+ + + L K C+ M FV +ALIS Y CG ++ A +F
Sbjct: 233 VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVF 285
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 31 LYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y KG DLK KVF +I +V W +M+ G + K G++++ ++ + + YT
Sbjct: 171 MYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYT 230
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T R I GS+ K +V F+ A++ Y CGE + AR +F
Sbjct: 231 MASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVF 286
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+HQ + IH +K GL++ H + + G+ + +VF +++ + LW TMI
Sbjct: 244 LHQGRLIHGSVMKHGLVSN-HFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIV 302
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVM 112
GY++ S + +L+++D + ++ T + R I G K V
Sbjct: 303 GYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVE 362
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V NAL+ Y C + A+GIF
Sbjct: 363 NDVVMNALVDMYAKCKALSDAKGIF 387
>gi|297816220|ref|XP_002875993.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321831|gb|EFH52252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 731
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H +IK G + + + +Y D KVF + + + WNTMI GY++
Sbjct: 303 QVHGLSIKTGY--EEYTLVSNSTMTMYSSFEDFGAAHKVFESLEEKDLITWNTMISGYNQ 360
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV-----MRVFVQNA 119
+ ++ +L+Y + V+ D +TF L A + ++C++ ++ + NA
Sbjct: 361 ANLGQSALLLYKRMHGIGVKPDEFTFGSLLASSLDLDALEMVQACVIKFGLSSKIEISNA 420
Query: 120 LISTYCLCGEVDMARGIF 137
LIS Y G++ A IF
Sbjct: 421 LISAYSKHGKITKADLIF 438
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 32 YEKGDLKYECKVFRKI-TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
++ GD++Y +VF K+ + V +WN MI G H + ++ ++ K VR D + F
Sbjct: 128 FKLGDIEYAFEVFDKMPERDDVAVWNAMITGCKESGYHGTSIELFREMHKLGVRHDKFGF 187
Query: 91 PFLFK-------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
+ F + + + K+ + V NALI+ Y C V AR +F E
Sbjct: 188 ATVLSMCYYGSLDFGKQVHSLVIKAGFFVASSVVNALITMYFNCQVVVDARLVFE---EA 244
Query: 144 DDGLHELIRIKAVDDDL 160
D + + + V D L
Sbjct: 245 DVAVRDQVTFNVVIDGL 261
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
+++H+ IK L P +TR ++ Y K DL + + VF ++++ +V W MI GYS
Sbjct: 495 QRVHAHIIKTYYL--PSVYLRTRLIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISGYS 552
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
R + +++ +L+SD+ + +T + T R I + K +F
Sbjct: 553 RRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIF 612
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y G + AR +F
Sbjct: 613 VGSSLLDMYAKAGRILEARMVF 634
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DLK K+F ++ + +V W TM+ GY + + + ++ +L S +R + TF
Sbjct: 273 DLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALD 332
Query: 96 GFTRDIAGSLE---------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ D+A E K+ + FV +AL++ Y CGEV +AR +F +S E D
Sbjct: 333 ACS-DLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKD 389
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK-YECKVFRKITQPSVFLWNTMI 59
+ Q Q+H+ +K GL T P + LY K L + +VF + + S W+++I
Sbjct: 41 LRQGLQLHAHILKFGLQTIPLVSHN--LINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTR--DIAGSLEKSCIVMR-- 113
+++ ++ + + +L VR D++ +P K GF R D+ S+ C+ ++
Sbjct: 99 SAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVH--CLAVKTG 156
Query: 114 ----VFVQNALISTYCLCGEVDMAR---------------GIFYMSCEDDDGLHELIRIK 154
VFV ++L+ Y CGE+ AR G+ Y + DDG+ L K
Sbjct: 157 YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFK 216
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E GD ++ +F ++ + +V W+ MI GY+++D + ++ L DV +++TF
Sbjct: 176 EIGDARH---LFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSS 232
Query: 93 LFKGFTRDIAGSLEK----SCIVMRV----FVQNALISTYCLCGEVDMARGIF 137
+ + + L K C+ M FV +ALIS Y CG ++ A +F
Sbjct: 233 VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVF 285
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 25/160 (15%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG------DLKYECKVFRKITQPSVFLWNT 57
LKQ+H+ +K T+ H LL ++Y +F I P +N
Sbjct: 41 LKQVHAHLLK----TRRHLDSTVTENLLESAAIILPATTMEYALSIFDNIDGPDSSAYNI 96
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSC 109
MI+ ++ S + + + +L+ V D +TFP K +R I + K
Sbjct: 97 MIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEGKQIHAQIVKYG 156
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE 149
V N LI Y CGE+++AR +F DG+ E
Sbjct: 157 FGSNCIVLNTLIHMYANCGEIEIARNMF-------DGMSE 189
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH+Q +K G +C + +Y G+++ +F +++ +F WN+M GY
Sbjct: 146 KQIHAQIVKYGF--GSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYV 203
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ +++ V ++ ++ + V ++ T + R IA + + + +
Sbjct: 204 KSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMN 263
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ AL+ Y CGEVD AR +F
Sbjct: 264 LVTALVDMYAKCGEVDKARRLF 285
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 37 LKYECKVFRKITQPSVFLW-NTMIKGYSR-----IDSHKNGVLMYLDLLKSDVRRDNYTF 90
L Y +VF ++TQPS +W NT+++GY+R S V +++ +L+ V D YTF
Sbjct: 77 LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTF 136
Query: 91 PFLFKGFTRDIAGSLEKSCIVMRV--------FVQNALISTYCLCGEVDMARGIF 137
L K AG + + V +V+ LI+ Y CG+ AR F
Sbjct: 137 VSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTF 191
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 44 FRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR---- 99
F +I PS+ L+N+ IK YS+ + +Y +LK ++ D +TF F+ K T
Sbjct: 56 FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115
Query: 100 ----DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+I + + + V++ +LI +C G +D AR +F
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVF 157
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H+ +K GL + + +Y K L K+F + + + WN MI G +
Sbjct: 268 QLHTLAVKYGL--ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
+L++ D+ KS +R D+ T L T +++ G + ++C+ M VF+
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C V MA+ ++
Sbjct: 386 VSALVDIYFKCRAVRMAQSVY 406
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HS +K + C ++ + +Y K G L +F KI+ WN+MI ++
Sbjct: 469 QELHSYALKNAY--EGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFA 526
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + ++ ++ V+ N T + + ++I G + K I +F
Sbjct: 527 QNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLF 586
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++ALI Y CG ++ A +F
Sbjct: 587 AESALIDMYGKCGNLEWAHRVF 608
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
KQIH +K G+ L+ H QT L +Y + L ++ KVF +I QP V W+ ++ GY
Sbjct: 136 KQIHCWVVKNGVFLSDGHV--QTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGY 193
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-----------EKSCIV 111
R G+ ++ ++L + D ++ + G+L +K I
Sbjct: 194 VRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQ--VGALAQGKWIHEFVKKKRWIE 251
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y CG ++ A +F
Sbjct: 252 SDVFVGTALVDMYAKCGCIETAVEVF 277
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQ H+Q + G + P+ QT LL+Y K G L+ KVF K+ + ++ WN +I
Sbjct: 22 ISQAKQTHAQILVHGFI--PNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILI 79
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---GFTRDIAGSLEKSCIVM---- 112
Y+ + + ++ LK R D++T P +FK G G + S ++
Sbjct: 80 ASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFE 139
Query: 113 -RVFVQNALISTYCLCGE-VDMARGIFYMSCEDD 144
V V ++++ Y CG VD R MS D
Sbjct: 140 EYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDS 173
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS I++G + + + L Y K G L + F ++ +WN MI G
Sbjct: 127 KMLHSWVIRIGF--EEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLG 184
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPF----------LFKGFTRDIAGSLEKSCIV-M 112
+ ++ + + D+L V+ D+ T P L KG ++I G + K+ I
Sbjct: 185 KACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKG--KEIHGQVVKNQIFGC 242
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V + N+LI Y CG + + +F
Sbjct: 243 EVAIGNSLIDMYAKCGCLHDSEKVF 267
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI--TQPSVFLWNTMIKGY 62
K +H Q+I GLL Y+ Y + ++ + SVF WN +I+
Sbjct: 178 KLLHQQSIMQGLLFHLATNLIGTYI---ASNSTAYAILLLERLPPSPSSVFWWNQLIRRA 234
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRV 114
+ S ++ +Y + D+YTFPF+FK + ++ +S V
Sbjct: 235 LHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNV 294
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAV 156
FV NA++S Y CG + A +F C G+ +L+ +V
Sbjct: 295 FVCNAVVSMYGKCGALRHAHNMFDDLCH--RGIQDLVSWNSV 334
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H +I+ GL+ + +Y K G ++ KVF+++ V WN M+ GYS
Sbjct: 384 RQVHGFSIRSGLVDDVFVGNAV--VDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYS 441
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALIST 123
+ ++ + ++ + + ++ D T+ + G+ + G C + VF Q
Sbjct: 442 QAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQG-----CEALDVFRQ------ 490
Query: 124 YCLCGE 129
C CG
Sbjct: 491 MCDCGS 496
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFL 93
G++ + F ++ +V WN M+ Y + + ++G+ MY +L + DVR D T+ L
Sbjct: 451 GNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTL 510
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FKG I G K +++ V NA+I+ Y CG + AR +F
Sbjct: 511 FKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVF 562
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
QI +T+K+GL+ + +Y K G + KVF + + WN MI GYS+
Sbjct: 525 QIIGRTVKVGLILDTSVANAV--ITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
K + ++ D+LK + D ++ + G
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSG 614
>gi|255580411|ref|XP_002531032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529385|gb|EEF31349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 392
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLY---EKGDLKYECKVFRKITQPSVFLWNTMI 59
++KQIH+ I GL ++ L LY + GD+ Y VF ++ PS F +N+MI
Sbjct: 26 EIKQIHAHIITNGLARFTFIT--SKILALYAVSQNGDINYAQAVFNQMPLPSSFDFNSMI 83
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-GFTRDIAGSLEKSCIVMR----- 113
G+S+ + G+ ++ + + + +TF L K F + + C +++
Sbjct: 84 LGFSQNSLSQKGISLFARMNSIRIETNTHTFTSLLKCCFCLSLLDQVH--CQILKYGYKS 141
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
V++ +++IS Y G V+ AR +F
Sbjct: 142 DVYINSSVISMYSKHGAVEYARQVF 166
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ +L++IH+ I GL P K + + G L Y +F ++ P WN++I
Sbjct: 17 LKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSII 76
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTR--------DIAGSLEKSCI 110
+G+++ S + ++ Y ++ D +TF F+ K R ++ GS+ +
Sbjct: 77 RGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGY 136
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF-------------YMSCEDDDGLHE 149
V V L+ Y G V +AR +F +SC GLH+
Sbjct: 137 DADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQ 188
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
+VF K+ + WN MI +S+ H+ + Y + +V D +T L
Sbjct: 161 QVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAH-- 218
Query: 102 AGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIF 137
G+L + R ++V NALI Y CG +D A IF
Sbjct: 219 LGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIF 264
>gi|449434032|ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Cucumis sativus]
gi|449526397|ref|XP_004170200.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Cucumis sativus]
Length = 486
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 24/198 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+Q + +G + P+ T+ L+LY K GDL+ + + + S+ WN++I GY
Sbjct: 108 KRIHAQMVVVGYV--PNEYLNTKLLILYAKSGDLETAYVLHEHLLEKSLVSWNSLIAGYV 165
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + G+ YL + +S + D YTF + + + G L K I V
Sbjct: 166 QKGLAEVGLEFYLKMRQSGLMPDQYTFASVLRACASLASLEHGKRAHGVLIKCQIGDNVV 225
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD--------DGLHELIRIKAVDDDLHELF--- 164
V +AL+ Y C + F S + G + RI V + H +
Sbjct: 226 VSSALVDMYFKCSSLSDGHKAFNKSSNRNVITWTALISGYGQHGRISEVLESFHSMINKG 285
Query: 165 --PEYLVQMLALPDTFMG 180
P Y+ + L G
Sbjct: 286 YRPNYVTFLAVLAACSRG 303
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY---EKGDLKYECKVFRKITQPSVFLWNT 57
M L QIH++ ++GL + + T+ +L +G ++Y +V + P + ++N
Sbjct: 29 MAHLTQIHAKIFRVGL--QDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNL 86
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---FTRDIAGSLEKSCIVMRV 114
MIK ++ ++ + ++++ +L K + DN+T P +FK + + G +V
Sbjct: 87 MIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSG 146
Query: 115 F---VQNALISTYCLCGEVDMARGIF 137
F V N+++ Y G++++A+ +F
Sbjct: 147 FDACVCNSVMGMYGALGKMEVAKKVF 172
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
G L ++F + + LW MI GY + + + ++ + +R DN+ L
Sbjct: 294 NGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTL 353
Query: 94 FKGFTRDIA--------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
KG + A G + ++ I + V AL+ Y CG V+ A +FY E D
Sbjct: 354 LKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERD 412
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 56/255 (21%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+++H +K G C + + G ++ KVF +I + V WN +I Y
Sbjct: 136 EKVHGYVVKSGF---DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVG 192
Query: 65 IDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFT------------RDIAGSLEKSCIV 111
++ + ++ + + S+++ D T + R + LE
Sbjct: 193 HRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELE----- 247
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVD---------DDLHE 162
M + NAL+ YC CG VD AR IF D+ G +I ++ D+ E
Sbjct: 248 MTTKIGNALLDMYCKCGCVDKARAIF-----DEMGNKNVICWTSMVSGYASNGSLDEARE 302
Query: 163 LFPEYLVQMLALPDTFMG---------EGLEVIPKSQAPR------------EETPRVGN 201
LF V+ + L + E L++ K Q R + + G
Sbjct: 303 LFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGA 362
Query: 202 LEEGTPQEGRPHEHS 216
LE+G G HE+S
Sbjct: 363 LEQGKWLHGYIHENS 377
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
Q QIH+Q LGL P + L + + ++ I +P F+ NT+++ +
Sbjct: 73 QFNQIHTQLTVLGLFQHPFAASRYIKKLCACLNSVSHCVSLYNHIEEPDAFMCNTIMRSF 132
Query: 63 SRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV---------- 111
++ + Y + ++ V ++YTFP + K DI GSL + V
Sbjct: 133 VNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAK-VCADI-GSLREGQKVHALVVKFGFE 190
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV+N+ I Y +CG AR +F
Sbjct: 191 LDLFVRNSFIRFYSVCGRTSDARMVF 216
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTMIK 60
L Q+HS +K K H P ++++ +++ VF ++ + +F WN++I+
Sbjct: 17 HLLQLHSLILKTA---KDHNPDLISQFIFSISSVSIEFARLVFDRLPIRAPIFAWNSIIR 73
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI---AGSLEKSCIVMRVF-- 115
Y++ V ++ + + ++ DN+T+PF+ K R + AG S IV F
Sbjct: 74 AYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDS 133
Query: 116 ---VQNALISTYCLCGEVDMARGIF 137
V N L+ Y V +AR +F
Sbjct: 134 DRYVGNTLLRMYANLNAVGLARRVF 158
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-- 99
+VF ++T V W++MI GY + + ++++ ++ ++ + ++ T L TR
Sbjct: 156 RVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACTRLL 215
Query: 100 ------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
I + +CI + V + A++ Y CG ++ A +F
Sbjct: 216 NIGVGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVF 259
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H+ +K GL + + +Y K L K+F + + + WN MI G +
Sbjct: 268 QLHTLAVKYGL--ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
+L++ D+ KS +R D+ T L T +++ G + ++C+ M VF+
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C V MA+ ++
Sbjct: 386 VSALVDIYFKCRAVRMAQSVY 406
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HS +K + C ++ + +Y K G L +F KI+ WN+MI ++
Sbjct: 469 QELHSYALKNAY--EGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFA 526
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + ++ ++ V+ N T + + ++I G + K I +F
Sbjct: 527 QNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLF 586
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++ALI Y CG ++ A +F
Sbjct: 587 AESALIDMYGKCGNLEWAHRVF 608
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
G+L VF K+++ ++F WN ++ GY++ + +Y +L V+ D YTFP +
Sbjct: 143 GNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCV 202
Query: 94 FK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ G D+A E V+R + V NALI+ Y CG+V AR +F
Sbjct: 203 LRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H KQIH+Q + LGL ++ + +Y K G L F ++ S W +I
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNA--LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
GY + H+ + ++ D+ ++ +R D TF + K G R + L +S
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VF + L+ Y CG +D A F
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTF 496
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQP----------SVF 53
+ +IH++ I G + P+ TR +L + Y + R + F
Sbjct: 30 VNKIHARLITNGFIKNPNLT--TRIVLDFADSRRSYLAEFARFVFHEYHVCSNGDFEDPF 87
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSL 105
LWN +IK +S + +L++ +L++ V D ++ + K GF ++ I G L
Sbjct: 88 LWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGFL 147
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K+ I +++QN LI Y CG + AR +F
Sbjct: 148 RKTGIWSDLYLQNCLIGLYIKCGCLGYARQVF 179
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ Y ++F ++ +P FLWNT++KGY + V +Y + VR D +TFPF+
Sbjct: 83 GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
K + G + K + V+ L+ Y GE+ A +F E D
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERD 200
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+L QI +Q + GL + + G ++ +VF K QP+ WN M +GY
Sbjct: 37 RLHQIQAQIVTHGLEGNDYVTP-SFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGY 95
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMR------V 114
++ + H + V+++ + ++ + +TFP + K A E C+V +
Sbjct: 96 AQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNT 155
Query: 115 FVQNALISTYCLCGEVDMA 133
FV ALI Y L G V +A
Sbjct: 156 FVGCALIHMYSLRGGVFVA 174
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K++HS I G+ + ++ + GDL K+F KI VFLWN ++ Y++
Sbjct: 114 KRVHSVIISNGISVDEALGAKLVFMYV-NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 172
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
I + + V ++ + K V + YTF + K F + + G + K V
Sbjct: 173 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 232
Query: 117 QNALISTYCLCGEVDMARGIF 137
N+LI+ Y G V+ A +F
Sbjct: 233 VNSLIAAYFKFGGVESAHNLF 253
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+L +VF K+ ++ W ++I Y R + + + ++ ++ VR D YT
Sbjct: 340 MYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 399
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ RD+ + K+ + + V NALI+ Y CG V+ AR +F
Sbjct: 400 VTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 455
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
+ K++H +KLG + + ++ G ++ +F ++++P V WN+MI G
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVV-NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 271
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
NG+ +++ +L V D T + R + G K+C V
Sbjct: 272 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEV 331
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
N L+ Y CG ++ A +F
Sbjct: 332 VFSNTLLDMYSKCGNLNGATEVF 354
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +HS IK G+ + P + +Y K G ++ VF KI + WNTMI GYS
Sbjct: 417 RDVHSYVIKNGM--GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 474
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++LD+ K + D+ T + R+I G + + +
Sbjct: 475 QNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH 533
Query: 116 VQNALISTYCLCGEVDMARGIFYM 139
V AL+ Y CG + +A+ +F M
Sbjct: 534 VACALVDMYAKCGLLVLAQLLFDM 557
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H + K GL +P T + +Y K GD+ +F K+ + +V W +I GY+
Sbjct: 217 QKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYA 274
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR---------- 113
+ + + + +++V + T+ + +G T +A LE V R
Sbjct: 275 QQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLA--LEHGKKVHRYIIQSGYGRE 332
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
++V NALI+ YC CG + AR +F
Sbjct: 333 IWVVNALITMYCKCGGLKEARKLF 356
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF---- 90
G LK K+F + V W M+ GY+++ H + ++ + + ++ D TF
Sbjct: 347 GGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSAL 406
Query: 91 ------PFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FL +G + I L + + V++Q+AL+S Y CG +D AR +F
Sbjct: 407 TSCSSPAFLQEG--KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +++H+ +K G+ +P+ + L +Y K G L +VF I ++ W MI
Sbjct: 112 LEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMI 169
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+ + + + Y + + + D TF L FT + + + K+ +
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V +L+ Y CG++ A+ IF
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIF 255
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++ +VFR++ WN++I GY+++ + + ++ ++ S V T +
Sbjct: 236 GDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVL 295
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDD 145
+ + G + +V +V NAL+ Y CG +++AR +F MS D
Sbjct: 296 GACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKCGSLELARQLFESMSTRDIT 355
Query: 146 GLHELI---RIKAVDDDLHELFPEYLVQMLALPD--TFMG 180
+ +I + ELF V+ PD TF+G
Sbjct: 356 CWNAMIVGFSVHGYSRKALELFDAMRVE----PDHVTFLG 391
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ Q++Q+H+Q G+L + Y Y + L +F + W+ M+
Sbjct: 94 LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRA-LDDAYGLFDGMCVRDSVSWSVMVG 152
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNAL 120
G++++ + N + +L++ R DNYT PF+ + RD+ +Q AL
Sbjct: 153 GFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA-CRDLKN------------LQMAL 199
Query: 121 ISTYCLCGEVDMARGIF 137
+ Y C E++ AR +F
Sbjct: 200 VDMYVKCREIEDARFLF 216
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ Q++Q+H+Q G+L + + Y + L +F + W+ M+
Sbjct: 376 LTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRA-LDDAYGLFDGMCVRDSVSWSVMVG 434
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
G++++ + N + +L++ R DNYT PF
Sbjct: 435 GFAKVGDYMNCFGTFRELIRCGARPDNYTLPF 466
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
+ +HS TIK G C + L+ +Y K G+L VF KI V W +++ GY
Sbjct: 357 ESVHSLTIKTGF---DACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGY 413
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
H+ + ++ D+ + V D + +F F R + + KS +
Sbjct: 414 VHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLL 473
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+N+LI+ Y CG ++ A +F
Sbjct: 474 SAENSLITMYAKCGCLEDAIRVF 496
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD--LKYECKVFRKITQPSVFLWNTM 58
+H K IH IK+ L + + T + +Y K L+ E F + + W M
Sbjct: 150 LHTGKMIHCYAIKIQL--EANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAM 207
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCI 110
+ GY++ + + ++ + +++TFP + F R + G + S
Sbjct: 208 LTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGF 267
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
V+VQ+AL+ Y CG++ AR I
Sbjct: 268 GPNVYVQSALVDMYAKCGDLASARMIL 294
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H I G P+ Q+ + +Y K GDL + + V WN+MI G
Sbjct: 256 RQVHGCIIWSGF--GPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIA-GSLEKSCIVMRVF----- 115
+ ++++ + D+R D++T+P + K +++ G S + F
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT 373
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+ Y G + A +F
Sbjct: 374 VSNALVDMYAKQGNLSCALDVF 395
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q H+ +K G + ++ + G L VF ++ + S W+ MI GY R
Sbjct: 157 QAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVR 216
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTF--------PFLFKGFTRDIAGSLEKSCIVMRVFV 116
+ V+++ + S VR D T TR + +E+ I V +
Sbjct: 217 AGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTL 276
Query: 117 QNALISTYCLCGEVDMARGIF 137
NALI T CG+VD A +F
Sbjct: 277 CNALIDTLAKCGDVDGAVAVF 297
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+HS IK GL + +Y K G L+ VF ++ ++ WN++I GY+
Sbjct: 253 RQLHSCAIKAGLGQDIFV--SCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYA 310
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + +Y ++ S V+ D++TF + + +R + SL ++ + V
Sbjct: 311 LHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVV 370
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI 151
AL+ Y G+VD AR +F MSC + + LI
Sbjct: 371 ANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALI 407
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
++Q+ QIH+ IK L + R DL Y VF +I P F+WNTM
Sbjct: 16 LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 75
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV- 114
I+ Y + + + ++ + + + D+Y+ + + G +D + V+++
Sbjct: 76 IRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIG 135
Query: 115 -----FVQNALISTYCLCGEVDMARGIF 137
FV+ ALI Y G++++AR I
Sbjct: 136 LGSDLFVETALIEMYAKFGDIEIARNIL 163
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 3 QLKQIHSQTIK----LGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
+L+Q+H+Q IK L +L + + +EC +K P F+WN+
Sbjct: 43 ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQK---PETFVWNSC 99
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
+K + DS + ++++ L + DV D +T + + R + G +EK
Sbjct: 100 LKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF 159
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+++QN ++ Y CGE+ AR +F
Sbjct: 160 RSNLYLQNMIVHLYASCGEMGEARLLF 186
>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Cucumis sativus]
Length = 816
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 27/150 (18%)
Query: 6 QIHSQTIKLGL---------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWN 56
QIH+ IKLG L +C YL ++F+ + +N
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYL----------ASQLFKHMLNKDTVTFN 210
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKS 108
+++ GYS ++ + ++L+L S ++ ++TF L F + + G + K+
Sbjct: 211 SLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKT 270
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIFY 138
V VFV NAL+ Y +VD +FY
Sbjct: 271 NFVWNVFVGNALLDYYSKHDQVDEVGKLFY 300
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+QIH Q I +G + + GD K K+F I S W MI Y +
Sbjct: 362 RQIHCQAITVGANFESRVENALVDMYAKCNGD-KEAQKIFDNIACKSTVPWTAMISAYVQ 420
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
H+ G+ ++ D+ ++ V D TF + + R + L +S + V+
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYS 480
Query: 117 QNALISTYCLCG 128
+AL+ TY CG
Sbjct: 481 GSALLDTYAKCG 492
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
Q H Q IK G H + + LY K G +C KVF +IT+P + LWNTM+ GYS
Sbjct: 261 QFHGQLIKTGFHQNSHVG--SGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318
Query: 64 RIDSH-KNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS---------LEKSCIVMR 113
+ + ++ + + + R ++ +F + + + S L+ R
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI+ Y CG + AR +F
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLF 402
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
+K+ H+Q + G P R + Y +L + KVF +++P VF N +IK
Sbjct: 35 NVKKAHAQVVVRGHEQDPFIA--ARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKV 92
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV---------- 111
Y+ D + ++ + + + YT+PF+ K + G+ +K ++
Sbjct: 93 YANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACGAE--GASKKGRVIHEHAVKCGMD 150
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV NAL++ Y C +V+++R +F
Sbjct: 151 LDLFVGNALVAFYAKCQDVEVSRKVF 176
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR--DNYTFPFL 93
D++ KVF +I + WN+M+ GY+ + +L++ D+L+ + D+ TF +
Sbjct: 168 DVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTV 227
Query: 94 FKGFTR--DIAGSLEKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
F + DI C +++ V LIS Y CG V MAR IF
Sbjct: 228 LPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIF 279
>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 846
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+H+Q I G+ C +R L LY G + +F + + WN MI
Sbjct: 60 VQQARQVHTQIIVGGM--SDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMI 117
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR---- 113
+G + +L Y +L S+V D YTFP++ K G L C+V+
Sbjct: 118 RGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKA-----CGGLNNVPLCMVVHNTAR 172
Query: 114 -------VFVQNALISTYCLCGEVDMARGIF 137
+FV +ALI Y G + AR +F
Sbjct: 173 SLGFHVDLFVGSALIKLYADNGYICDARRVF 203
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H I G P + +Y K G+L K+F + Q WN +I GY +
Sbjct: 267 QVHGLVIGSGFEFDPQVANTL--VAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQ 324
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL----EKSCIVMR------V 114
++ ++ + V+ D+ TF +GSL E ++R V
Sbjct: 325 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILE--SGSLRHCKEVHSYIVRHRVPFDV 382
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
++++ALI Y G+V+MAR IF
Sbjct: 383 YLKSALIDIYFKGGDVEMARKIF 405
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF----- 90
DL YE FR++++ WN+MI +S+ + V ++ + S + D+ +
Sbjct: 500 DLAYE--FFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALS 557
Query: 91 -----PFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
P L+ G +++ G + ++ FV +ALI Y CG++ +AR +F
Sbjct: 558 SAANLPALYYG--KEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVF 607
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +Q+H+Q I G+ C +R L LY G + +F ++ WN MI
Sbjct: 27 VQQARQVHTQVIVGGM--GDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMI 84
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR---- 113
+G + +L Y +L S+V D YTFP++ K G L C+V+
Sbjct: 85 RGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKA-----CGGLNNVPLCMVVHDTAR 139
Query: 114 -------VFVQNALISTYCLCGEVDMARGIF 137
+F +ALI Y G + AR +F
Sbjct: 140 SLGFHVDLFAGSALIKLYADNGYIRDARRVF 170
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H I G P + +Y K G+L Y K+F + Q WN +I GY +
Sbjct: 234 QLHGLVIGSGFEFDPQVANTL--VAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQ 291
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL----EKSCIVMR------V 114
++ ++ + V+ D+ TF +GSL E ++R V
Sbjct: 292 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILE--SGSLRHCKEVHSYIVRHRVPFDV 349
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
++++ALI Y G+V+MAR IF
Sbjct: 350 YLKSALIDVYFKGGDVEMARKIF 372
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 25/239 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRK-ITQPSVFLWNTM 58
+++ KQ+HS I G P P T + +Y K G + VF + +VF +N +
Sbjct: 27 LNKGKQLHSLMITYGFSPSP--PSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAI 84
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF-----TRDIAGSLEKSCIVMR 113
I G+ G Y + V D YTFP + + + I G L K + +
Sbjct: 85 ISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELD 144
Query: 114 VFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELI----RIKAVDDDLHELFPEYL 168
VFV +AL++TY G ++ A+ +F +S D + +I +I +D+ L E+F
Sbjct: 145 VFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEAL-EVFRRMH 203
Query: 169 VQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNSI 227
V+ +A P F G+ + S+ G+L+ G G + D +SN++
Sbjct: 204 VKGVA-PSRFTITGILSVFASR---------GDLDNGKTVHGIVMKMGYDSGVSVSNAL 252
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++K+IH +K+GL L + G ++ KVF +++ V LWN MI GY
Sbjct: 128 EVKKIHGCLLKMGLELDVFVGSALVNTYL-KNGSMEDAQKVFGELSIRDVVLWNAMINGY 186
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR------V 114
++I + ++ + V +T + F D+ IVM+ V
Sbjct: 187 AKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGV 246
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V NALI Y C + A IF M E D
Sbjct: 247 SVSNALIDMYGKCKHIGDALIIFEMINEKD 276
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKIT-QPSVFLWNTMIKGY 62
+Q+H+Q ++ GL T + QT L LY K + + VF + ++ W+ M+ GY
Sbjct: 195 RQLHAQALRQGLATSAYV--QTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGY 252
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVM 112
SR+ + ++ ++ V D T + + AG+L+ + I +
Sbjct: 253 SRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAK--AGALDLGKWVHAYIDRKGITV 310
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + ALI Y CG ++ ARG+F E D
Sbjct: 311 DLELSTALIDMYAKCGLIERARGVFDAMVEKD 342
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFK----- 95
+F +I P+ F +N++I+ S + +Y +L++ R N +T F K
Sbjct: 130 NLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 188
Query: 96 ---GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G R + + + +VQ L++ Y C +V +AR +F
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVF 233
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
Q H Q IK G H + + LY K G +C KVF +IT+P + LWNTM+ GYS
Sbjct: 261 QFHGQLIKTGFHQNSHVG--SGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318
Query: 64 RIDSH-KNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGS---------LEKSCIVMR 113
+ + ++ + + + R ++ +F + + + S L+ R
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI+ Y CG + AR +F
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLF 402
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 11/150 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H +K+GL + + +Y K G L K+F ++ + WNTMI GY
Sbjct: 263 KQVHCHVLKVGL--DGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYV 320
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE--------KSCIVMRVF 115
+ + +Y ++L+ V+ T+ + + A L K+ V
Sbjct: 321 QSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVV 380
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V NALI Y CG + AR +F M E D+
Sbjct: 381 VGNALIDMYAKCGSIKNARLVFDMLSERDE 410
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K GD +VF ++ + V W+ MI Y++ + + V ++ + ++ V + +T
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245
Query: 90 FPFLFKGFT--RDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
F + + ++ + C V++ VFV NAL+ Y CG +D + +F
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF 301
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 8 HSQTIKLGLLTKPHCPK---QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
H + I +LT + P Q L +Y K G LK +F + +V W +MI GYS
Sbjct: 116 HGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYS 175
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R N + +Y+ +L+S D++TF + K R + + KS +
Sbjct: 176 RYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLI 235
Query: 116 VQNALISTYCLCGEVDMARGIF 137
QNALIS Y ++ A +F
Sbjct: 236 AQNALISMYTKFSQMADAINVF 257
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 6 QIHSQTIKLGL-LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI-TQPSVFLWNTMIKGY 62
Q+HS +K+G L P C L +Y K +L +VF I + + WNT++
Sbjct: 423 QVHSYIVKMGFNLDIPVC---NSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC 479
Query: 63 SRIDSHKNGVLMYLD--LLKSDVRRDNYTFP--FLFKGFTRDIAGSLEKSCIVMR----- 113
+ ++ G ++ L + S ++ D+ T + G + C +M+
Sbjct: 480 --LQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNL 537
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI+ Y CG ++ AR +F
Sbjct: 538 DISVSNALINMYTKCGSLECARKMF 562
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT-- 98
VF +I + W +MI G+S++ + + ++L V + N + F F +
Sbjct: 255 NVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314
Query: 99 ------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
R I G K + +F +L Y CG ++ AR +FY
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFY 360
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
++Q+ QIH+ IK L + R DL Y VF +I P F+WNTM
Sbjct: 10 LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 69
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV- 114
I+ Y + + + ++ + + + D+Y+ + + G +D + V+++
Sbjct: 70 IRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIG 129
Query: 115 -----FVQNALISTYCLCGEVDMARGIF 137
FV+ ALI Y G++++AR I
Sbjct: 130 LGSDLFVETALIEMYAKFGDIEIARNIL 157
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSV---FLWNTMIK 60
+++H+Q +K+GL + +T + +Y K GD++ + ++ P + WNTMI
Sbjct: 119 QKLHTQVLKIGLGSDLFV--ETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIH 176
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVM 112
G++ + + ++ ++ ++V D T + G + I +E++ I +
Sbjct: 177 GHASLGDSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEI 236
Query: 113 RVFVQNALISTYCLCGEVD 131
+ + +L+ Y CG++D
Sbjct: 237 DLKLGTSLVDMYAKCGDID 255
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 22/159 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +LKQ+ + K GL + P K + L G+L + +F + + + F+ NTMI
Sbjct: 18 MLELKQVQAIITKAGLHSHLPFTAKLIFFSALSPMGNLSHAHSLFLQTSMHNSFICNTMI 77
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD---------------IAGS 104
+ ++ + +Y + ++V D++T+ F+ K +R I+
Sbjct: 78 RAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFVKCDEFIIISKG 137
Query: 105 LEKSCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
E C V+++ +QN+L+ Y CG V +A+ +F
Sbjct: 138 GEVHCTVLKLGLDQDPSIQNSLLCMYSQCGLVHVAQHLF 176
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKIT-QPSVFLWNTMIKGY 62
+Q+H+Q ++ GL T + QT L LY K + + VF + ++ W+ M+ GY
Sbjct: 146 RQLHAQALRQGLATSAYV--QTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGY 203
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVM 112
SR+ + ++ ++ V D T + + AG+L+ + I +
Sbjct: 204 SRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAK--AGALDLGKWVHAYIDRKGITV 261
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + ALI Y CG ++ ARG+F E D
Sbjct: 262 DLELSTALIDMYAKCGLIERARGVFDAMVEKD 293
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFK----- 95
+F +I P+ F +N++I+ S + +Y +L++ R N +T F K
Sbjct: 81 NLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139
Query: 96 ---GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G R + + + +VQ L++ Y C +V +AR +F
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVF 184
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 8 HSQTIKLGLLTKPHCPK---QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
H + I +LT + P Q L +Y K G LK +F + +V W +MI GYS
Sbjct: 116 HGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYS 175
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
R N + +Y+ +L+S D++TF + K R + + KS +
Sbjct: 176 RYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLI 235
Query: 116 VQNALISTYCLCGEVDMARGIF 137
QNALIS Y ++ A +F
Sbjct: 236 AQNALISMYTKFSQMADAINVF 257
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 6 QIHSQTIKLGL-LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKI-TQPSVFLWNTMIKGY 62
Q+HS +K+G L P C L +Y K +L +VF I + + WNT++
Sbjct: 423 QVHSYIVKMGFNLDIPVC---NSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC 479
Query: 63 SRIDSHKNGVLMYLD--LLKSDVRRDNYTFP--FLFKGFTRDIAGSLEKSCIVMR----- 113
+ ++ G ++ L + S ++ D+ T + G + C +M+
Sbjct: 480 --LQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNL 537
Query: 114 -VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI+ Y CG ++ AR +F
Sbjct: 538 DISVSNALINMYTKCGSLECARKMF 562
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT-- 98
VF +I + W +MI G+S++ + + ++L V + N + F F +
Sbjct: 255 NVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314
Query: 99 ------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
R I G K + +F +L Y CG ++ AR +FY
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFY 360
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H+ +K GL +P + +Y K L+ ++F + + + WN MI G +
Sbjct: 269 QLHTLAVKYGL--EPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQ 326
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
+ + ++ D+ KS ++ D+ T L T ++I G + ++C + VF+
Sbjct: 327 NGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFL 386
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C +V MA+ +F
Sbjct: 387 VSALVDIYFKCRDVRMAQNVF 407
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 6 QIHSQTIKLGLLTKPH---CPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFL---WNTM 58
+IH++ + GLL QTR + +Y + VF + + + WN +
Sbjct: 57 RIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWL 116
Query: 59 IKGYSRIDSHKNGVLMYLDLLK--SDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR--- 113
I+G++ H+ VL Y+ + S R D +T P++ K G+L +V R
Sbjct: 117 IRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA--ALGALHLGRLVHRTTR 174
Query: 114 -------VFVQNALISTYCLCGEVDMARGIF 137
++V +ALI Y G +D AR +F
Sbjct: 175 ALGLDRDMYVGSALIKMYADAGLLDGAREVF 205
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 22 CPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80
C ++ + +Y K G L +F K++ WN+MI +++ + + ++ ++
Sbjct: 485 CYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIM 544
Query: 81 SDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDM 132
V+ +N T + + ++I G + K I +F ++ALI Y CG +++
Sbjct: 545 EGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLEL 604
Query: 133 ARGIF 137
A +F
Sbjct: 605 ALRVF 609
>gi|413954745|gb|AFW87394.1| hypothetical protein ZEAMMB73_238054 [Zea mays]
Length = 430
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH++ + G + T+ L+ Y K G L K+F + Q SV WN MI G +
Sbjct: 55 KRIHARMVATGFRCSAYVA--TKLLIFYAKIGHLGCAQKMFDGMPQRSVVAWNAMISGCA 112
Query: 64 R--IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
R ++ + V ++ + + D +TF + G R + G KS +
Sbjct: 113 RGSGEAQERAVELFSAMRAEGLAPDQFTFASVLCACARLAALGHGRRVHGVAVKSDVGGN 172
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VF +AL+ Y C + AR +F + E +
Sbjct: 173 VFANSALVDMYLKCSCPEDARRVFAAAPERN 203
>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
Length = 582
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRID 66
IH++ + LG+ P T + L Y +VF ++WNT+++ ++
Sbjct: 44 IHARAVVLGISANP--AFATSLITAVAPACLAYARRVFDAAPSRDAYMWNTLLRAHAHSR 101
Query: 67 SH-KNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQ 117
+H ++ + +Y + + V D+YT+P + R G + + FV
Sbjct: 102 AHARDALALYARMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALARDGFVS 161
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDDDG 146
+ALIS Y GEV A +F E DD
Sbjct: 162 SALISMYSQEGEVRDAERVF---AERDDA 187
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 29/187 (15%)
Query: 32 YEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
++ GD + VF +I ++ WN +I GY++I + + + +L+ V+ D +T
Sbjct: 228 FKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMA 287
Query: 92 FLFKGFTRDIAGSLEKSCIVMRV----------FVQNALISTYCLCGEVDMARGIF-YMS 140
L + GSLE+ V FV N LI Y CG++ AR IF M
Sbjct: 288 SLLSACAQ--LGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMR 345
Query: 141 CEDDDGLHELIRIKA----VDDDLHELF--------PEYLVQMLALP----DTFMGEGLE 184
++++ + +I A D+ LH F P + + L F+ EGL+
Sbjct: 346 WKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQ 405
Query: 185 VIPKSQA 191
+ K A
Sbjct: 406 IFNKLDA 412
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH ++ G L PH +T + +Y E G LK +F ++ + +V WN++I Y
Sbjct: 350 RTIHGYAMRRGFL--PHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYV 407
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + + ++ +L S + D+ T + + R+I + KS
Sbjct: 408 QNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTI 467
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ N+L+ Y +CG+++ AR F
Sbjct: 468 ILNSLVHMYAMCGDLEDARKCF 489
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 23 PKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
P TR L + L + ++F ++ + FLWN MIKG++ + V Y ++ +
Sbjct: 65 PALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFA 124
Query: 82 DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
V+ D +T+PF+ K + I + K V V+V N+LIS Y G A
Sbjct: 125 GVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDA 184
Query: 134 RGIF 137
+F
Sbjct: 185 EKVF 188
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
K+IH+ IKLG ++ + + LY K ++ KVF ++ + + WN+MI GY
Sbjct: 150 KKIHAMVIKLGFVSDVYVCNSL--ISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYL 207
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR-------V 114
+ + ++++ ++LK + D ++ + + + K C +R V
Sbjct: 208 ALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDV 267
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V +++ Y GEV A IF
Sbjct: 268 MVMTSILDMYSKYGEVSYAERIF 290
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH ++ + T T L +Y K G++ Y ++F + Q ++ WN MI Y+
Sbjct: 251 KEIHCHAVRSRIETGD-VMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309
Query: 64 RIDSHKNGVLMYLDL-----LKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQN 118
R + L + + L+ DV P R I G + + + ++
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLET 369
Query: 119 ALISTYCLCGEVDMARGIF 137
ALI Y CG++ A IF
Sbjct: 370 ALIDMYGECGQLKSAEVIF 388
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 29/187 (15%)
Query: 32 YEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
++ GD + VF +I ++ WN +I GY++I + + + +L+ V+ D +T
Sbjct: 228 FKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMA 287
Query: 92 FLFKGFTRDIAGSLEKSC----------IVMRVFVQNALISTYCLCGEVDMARGIF-YMS 140
L + GSLE+ I FV N LI Y CG++ AR IF M
Sbjct: 288 SLLSACAQ--LGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMR 345
Query: 141 CEDDDGLHELIRIKA----VDDDLHELF--------PEYLVQMLALP----DTFMGEGLE 184
++++ + +I A D+ LH F P + + L F+ EGL+
Sbjct: 346 WKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQ 405
Query: 185 VIPKSQA 191
+ K A
Sbjct: 406 IFNKLDA 412
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
L + H+Q + G K + L + G L KVF IT PS +WN +IKG+
Sbjct: 42 NLAKTHAQIVVSGFSQKNYILNHLLSLYI-SFGSLGSAQKVFEDITAPSTTVWNQIIKGH 100
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRV 114
+R + K + ++ + + V + +T+ FL R I G + + +
Sbjct: 101 TRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNL 160
Query: 115 FVQNALISTYCL---CGEVDMARGIF 137
+V+ LI+ Y G+ D+ R ++
Sbjct: 161 YVRTNLINLYANGGDGGDFDLKRALY 186
>gi|297818474|ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322958|gb|EFH53379.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 399
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
KQIH +K G+ L+ H QT L +Y + + + KVF +I +P V W+ ++ GY
Sbjct: 31 KQIHCWVVKNGVFLSDGHV--QTGILRIYVEDKVLLDAHKVFDEIPKPDVVKWDVLMNGY 88
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-----------EKSCIV 111
R G+ ++ ++L V D ++ + G+L +K I
Sbjct: 89 VRCGLGSEGLEVFREMLVRGVEPDEFSVTTALTACAQ--VGALAQGKWIHEFVKKKRWIE 146
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y CG ++MA +F
Sbjct: 147 SDVFVGTALVDMYAKCGCIEMAVEVF 172
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 1 MHQLKQIHSQTIKLGLL--TKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSVFLWNT 57
+ Q+KQIH+Q + GL T P Y+ +L + VF + + P +WN
Sbjct: 68 LTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCR---NLSFARIVFDQFPSLPPTIIWNL 124
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLF---------KGFTRDIAGSLE 106
MI+ YS+ S + + ++ +L D YTF F+F +G+ ++ G +
Sbjct: 125 MIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVV 184
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K +FV N+L++ Y + + A+ +F
Sbjct: 185 KDGYESDIFVGNSLVNMYSIFSRMVDAKRVF 215
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 13/150 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ--TRYLLLY---EKGDLKYECKVFRKITQPSVFLW 55
+ L QIH+ + G Q Y L G L + ++F +I +P F++
Sbjct: 23 IQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMY 82
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEK 107
NT+++ YS D + + ++ +L+ + + +T PF+ K T A G + K
Sbjct: 83 NTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVK 142
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
V ++FV NAL+ + G + +R F
Sbjct: 143 LGFVQQIFVANALLHFHASAGSLRDSRRFF 172
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS 67
H +KLG + + + G L+ + F ++ +V WNTMI GY++
Sbjct: 137 HGVVVKLGFVQQIFVANALLHFH-ASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGE 195
Query: 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV--------MRV--FVQ 117
++ ++ + D +T L F G+LE +V RV +
Sbjct: 196 VSEACALFGEMRHQGLLADVFTLVSLL--FACSSEGNLEVGRLVHCHMLVSGSRVDRILG 253
Query: 118 NALISTYCLCGEVDMARGIFYM 139
NAL+ Y CG++ MA F M
Sbjct: 254 NALLDMYGKCGDLWMAHRCFDM 275
>gi|255539733|ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550046|gb|EEF51533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLE 106
S F WN++I GYS + +++ + +Y + + V D +TFP + K + ++
Sbjct: 160 SAFAWNSLIAGYSELGLYEDAIALYFQMDEEYVEPDEFTFPRVLKACGGLGLIQVGEAVH 219
Query: 107 KSCIVMRV----FVQNALISTYCLCGEVDMARGIF 137
+ I + F NAL+ Y CG++ AR IF
Sbjct: 220 RDLIRLGFANDRFASNALVDMYAKCGDIVKARSIF 254
>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 611
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMI 59
+H KQIH Q G P T+ + +Y D + ++F K+ QP+V+ W +
Sbjct: 11 LHAGKQIHQQITVSGWGKDPF--MLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIF 68
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI----AGSLEKSCIVM--- 112
Y R + V Y + SDV DNY FP + + T+ + + K IV
Sbjct: 69 GFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCE 128
Query: 113 -RVFVQNALISTYCLCGEVDMARGIF 137
+ V N+LI Y CG AR +F
Sbjct: 129 SNLQVCNSLIDMYVKCGNARSARLVF 154
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH K+ T + L +Y K G ++ VF + + + WN MI G+
Sbjct: 284 KEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFV 343
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYT----FPFLFKGFTRDIAGSLEKSCIVMRVF-VQN 118
+D K + + ++ + D++ D T P + I + KS + V V N
Sbjct: 344 ELDLGKQAIECFREMQRMDIKNDQTTISTILPVCDLQYGNPIHAYVRKSITLSSVVTVWN 403
Query: 119 ALISTYCLCGEVDMARGIF 137
A+I YC CG V A IF
Sbjct: 404 AVIHMYCKCGCVRSAYTIF 422
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSV----FLWNTMI 59
+++HS+ +KLGL + + R + LY K G+L +VF ++ + V W MI
Sbjct: 150 REVHSRALKLGLSSNRLV--RLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMI 207
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G+ R + + + + +VR + +T + + R + + K I
Sbjct: 208 DGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 267
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV NALI+ Y CG +D A+ +F
Sbjct: 268 LNLFVGNALINMYSRCGSIDEAQTVF 293
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y ++F+ P+V+L+ +I G+ ++ + + +Y +L + DNY + K
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 97 F--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
R++ K + V+ ++ Y CGE+ AR +F ED
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 194
>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 655
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT-QPS-VFLWNTMIKGYSR 64
IH Q I GLL+ + YL L + + + +T PS V+ WN +I+ R
Sbjct: 60 IHQQAIVQGLLSHFSLNLISTYLALNAP---SHALSLLQCLTPSPSAVYWWNALIRRAVR 116
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM---------RVF 115
+ ++ + ++ + + + D+YTFPF+FK ++ L SCI VF
Sbjct: 117 LGLLQHSLSLFRTMRRLNWSPDHYTFPFVFKA-CGELPSFLHGSCIHAIVCSTGFDSNVF 175
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NA+++ Y CG AR +F
Sbjct: 176 VCNAVVAMYGRCGASSYARQMF 197
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLL------YEKGDLKYECKVFRKITQPSVFLWN 56
+LK+IH+ +K L Q+ +L+ + +Y +F+++ P+ FL+N
Sbjct: 29 ELKKIHAHIVKFSL-------SQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYN 81
Query: 57 TMIKGYSRIDSHKNGVLMYLDLL-----KSDVRRDNYTFPFLFKG--------FTRDIAG 103
MI+ Y + + +Y +L ++ + D +TFPF+ K + + G
Sbjct: 82 AMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHG 141
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K V+N+L+ Y C +D A +F E D
Sbjct: 142 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERD 182
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G ++ +F ++ ++F W ++ GY+RI + + + + + + D + +
Sbjct: 197 GQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVL 256
Query: 95 KG--------------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F D AG L C+ NALI Y CG +D R +F
Sbjct: 257 PACAQLGALELGKWIHFYADKAGFLRNICVC------NALIEMYAKCGSIDEGRRLF 307
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K++HS I G+ + ++ + GDL K+F KI VFLWN ++ Y++
Sbjct: 389 KRVHSVIISNGISIDEALGAKLVFMYV-NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 447
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
I + + V ++ + K V + YTF + K F + + G + K V
Sbjct: 448 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 507
Query: 117 QNALISTYCLCGEVDMARGIF 137
N+LI+ Y G V+ A +F
Sbjct: 508 VNSLIAAYFKFGGVESAHNLF 528
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+L +VF K+ ++ W + I Y R + + + ++ ++ VR D YT
Sbjct: 615 MYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 674
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ RD+ + K+ + + V NALI+ Y CG V+ AR +F
Sbjct: 675 VTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ + K++H +KLG + + ++ G ++ +F ++++P V WN+MI
Sbjct: 486 VKECKRVHGYVLKLGFGSNTAVV-NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVM 112
G NG+ +++ +L V D T + + R + G K+C
Sbjct: 545 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSE 604
Query: 113 RVFVQNALISTYCLCGEVDMARGIF 137
V N L+ Y CG ++ A +F
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVF 629
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +HS IK G+ + P + +Y K G ++ VF KI + WNTMI GYS
Sbjct: 692 RDVHSYVIKNGM--GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 749
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + ++LD+ K + D+ T + R+I G + + +
Sbjct: 750 QNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH 808
Query: 116 VQNALISTYCLCGEVDMARGIFYM 139
V AL+ Y CG + +A+ +F M
Sbjct: 809 VACALVDMYAKCGLLVLAQLLFDM 832
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFLWN 56
+LK+IH+ +K L Q+ +L+ G+ +Y +F+ + P+ FL+N
Sbjct: 29 ELKKIHAHIVKFSL-------SQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYN 81
Query: 57 TMIKGYSRIDSHKNGVLMYLDLL-----KSDVRRDNYTFPFLFKG--------FTRDIAG 103
MI+ Y + + +Y +L ++ + D +TFPF+ K + + G
Sbjct: 82 AMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHG 141
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K V+N+L+ Y C +D A +F E D
Sbjct: 142 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERD 182
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G ++ +F ++ ++F W ++ GY+RI + + + + + + D + +
Sbjct: 197 GQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVL 256
Query: 95 KGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ G+LE K+ + + V NALI Y CG +D R +F
Sbjct: 257 PDCAQ--LGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF 307
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ HS KL L + PH + +Y + G + + KVF +I + + WN+MI GY+
Sbjct: 136 RAAHSLVFKLALHSDPHTTHS--LITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYA 193
Query: 64 RIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
+ + V ++ ++ + D D + + R + G + + + +
Sbjct: 194 KAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNS 253
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
++ +ALIS Y CG++ AR IF
Sbjct: 254 YIGSALISMYAKCGDLGSARRIF 276
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSV----------- 52
+ +IH+Q I G + + TR +L + ++ + R + +
Sbjct: 9 VNKIHAQLITTGFIKNTNLT--TRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYGETED 66
Query: 53 -FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAG 103
FLWN ++K +S + +L++ +L++ V D ++ + K +R I G
Sbjct: 67 PFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGMQIHG 126
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
L K+ + +F+QN LI+ Y CG + AR IF
Sbjct: 127 FLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIF 160
>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 885
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 19/215 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+++ IH IK GL +P + LY K G L + KV + + V W +I
Sbjct: 109 LNEGTAIHGNVIKSGL--EPDSHLWVSLINLYAKCGSLAFARKVLVGMRERDVVSWTALI 166
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY +GV Y ++ K ++ + +T + K F + I K+ ++
Sbjct: 167 AGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLIHLEAIKTGLL 226
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKAVDDDLHELFPEYLVQ 170
+ +FV +AL+ Y GE+++A +F+ M +++ + L+ A D + + +
Sbjct: 227 LDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVL-KLFCR 285
Query: 171 MLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEG 205
ML F L + K A GNL EG
Sbjct: 286 MLECEMNFTNYTLSTVLKGCANS------GNLREG 314
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYS 63
KQ+H+ IK L T + +Y K + V F K+T +F W +I G+S
Sbjct: 517 KQVHAHIIKNSLDGNDFVG--TALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAGHS 574
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMR------VF 115
+ D + V +L+ ++ + +T G +R + + + ++ VF
Sbjct: 575 QTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDVF 634
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +AL+ Y CG ++ A IF
Sbjct: 635 VSSALVDMYGKCGCMEDAEAIF 656
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH + IK GLL + + LY K G+++ +VF + + + WN ++ GY+
Sbjct: 214 KLIHLEAIKTGLLLDLFVG--SALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYA 271
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNA---- 119
+ KN + ++ +L+ ++ NYT + KG +G+L + + + ++ A
Sbjct: 272 QRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCAN--SGNLREGKALHSLSIRRAYELD 329
Query: 120 ------LISTYCLCGEVDMARGIFYMSCEDD 144
L+ Y CG A +F M E D
Sbjct: 330 EFLGCNLVDMYSKCGMAYEALKVFNMIEEPD 360
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H+ + KLG + + + +Y K G ++ VF K+++ V WN+MI G+S
Sbjct: 438 KQVHAVSQKLGFYDDVYVA--SSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFS 495
Query: 64 RIDSHKNGVLMYLDLLK-----------SDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM 112
I+S + L ++ + + LF+G + I + K V
Sbjct: 496 -INSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQG--QQIHAQIIKDGYVD 552
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYM 139
VFV ++L+ YC CG+V AR F M
Sbjct: 553 NVFVGSSLVEMYCKCGDVGAARYYFDM 579
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ GD+K ++F ++ PS+ WN ++ GY++ H V ++ + D T
Sbjct: 364 KSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAI 423
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + +K V+V ++LI+ Y CG++++++ +F
Sbjct: 424 ILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVF 476
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q KQIH+ +K G H L +Y K GD+ VF + + SV WN MI G
Sbjct: 269 QGKQIHTLAVKHGFERDLHLCNSL--LDMYAKTGDMDSAENVFENLDKHSVVSWNIMISG 326
Query: 62 Y-SRIDSHK 69
Y +R DS K
Sbjct: 327 YGNRCDSEK 335
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLL---YEKGDLKYECKVFRKITQPSVFLWNTM 58
+ L+ I + T++ P P L+ ++KG + C +F +I + V W M
Sbjct: 21 NSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAM 80
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF---KGFTRDIAGSLEKSC-----I 110
I G++ + + M+ ++L+S+V+ + +T + KG G+L S I
Sbjct: 81 IVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGI 140
Query: 111 VMRVFVQNALISTYCL-CGEVDMARGIF 137
V+VQNAL+ Y C +D A +F
Sbjct: 141 DRSVYVQNALLDMYAASCATMDDALSVF 168
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 5 KQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYEC---KVFRKITQPSVFLWNTMI 59
KQIH+ K GL HC P L +Y + Y C + F ++T+ ++ WNT+I
Sbjct: 231 KQIHAAVTKYGL----HCDAPVMNSILDMYCR--CNYLCDAKRCFGELTEKNLITWNTLI 284
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC-------IVM 112
GY R DS ++ L + + S+ + N F F T A SC IV
Sbjct: 285 AGYERSDSSESLSLFF--QMGSEGYKPN---CFTFTSITAACANLAVLSCGQQVHGGIVR 339
Query: 113 RVF-----VQNALISTYCLCGEVDMARGIF 137
R F + N+LI Y CG + + +F
Sbjct: 340 RGFDKNVALINSLIDMYAKCGSISDSHKLF 369
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+Q + G + H T L +Y K +++ KVF +T+ +V WN MI G++
Sbjct: 193 VHAQIVIRGFTS--HTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV------FVQ 117
D + + ++L ++ V D TF + K G RD+ + E S + + V
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVG 310
Query: 118 NALISTYCLCGEVDMARGIF---YMSC 141
ALI CG + AR IF +++C
Sbjct: 311 TALIDMNSKCGSLQEARSIFNSHFITC 337
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF-------------TRDI 101
WN MI GY R ++ + ++ + ++D+ D+YT+ +F R I
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
LE V V + NA+ + Y CG ++ R +F
Sbjct: 403 KSGLE----VNYVSISNAVANAYAKCGSLEDVRKVF 434
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 78/185 (42%), Gaps = 13/185 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K++H++ IK GL + G L+ KVF ++ + W +++ YS+
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ ++ ++ + + +TF + + + + G + K + M +
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514
Query: 117 QNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKA---VDDDLHELFPEYLVQML 172
++AL+ Y CG + A+ +F +S D +I A + DD +LF +VQ+
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRR-MVQLG 573
Query: 173 ALPDT 177
P+
Sbjct: 574 VEPNA 578
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLL---YEKGDLKYECKVFRKITQPSVFLWNTM 58
+ L+ I + T++ P P L+ ++KG + C +F +I + V W M
Sbjct: 21 NSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAM 80
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF---KGFTRDIAGSLEKSC-----I 110
I G++ + + M+ ++L+S+V+ + +T + KG G+L S I
Sbjct: 81 IVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGI 140
Query: 111 VMRVFVQNALISTYCL-CGEVDMARGIF 137
V+VQNAL+ Y C +D A +F
Sbjct: 141 DRSVYVQNALLDMYAASCATMDDALSVF 168
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 5 KQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYEC---KVFRKITQPSVFLWNTMI 59
KQIH+ K GL HC P L +Y + Y C + F ++T+ ++ WNT+I
Sbjct: 231 KQIHAAVTKYGL----HCDAPVMNSILDMYCR--CNYLCDAKRCFGELTEKNLITWNTLI 284
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC-------IVM 112
GY R DS ++ L + + S+ + N F F T A SC IV
Sbjct: 285 AGYERSDSSESLSLFF--QMGSEGYKPN---CFTFTSITAACANLAVLSCGQQVHGGIVR 339
Query: 113 RVF-----VQNALISTYCLCGEVDMARGIF 137
R F + N+LI Y CG + + +F
Sbjct: 340 RGFDKNVALINSLIDMYAKCGSISDSHKLF 369
>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+KG + ++F+++ + ++ WN MI G+S++ ++ V +++++++ + YTFP
Sbjct: 171 KKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYTFPC 230
Query: 93 LFKGFTRDIAGSLEKS---CIV-----MRVFVQNALISTYCLCGEVDMARGIFY 138
A + +S C + VFV N+LIS Y CG ++ + +FY
Sbjct: 231 AIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFY 284
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+Q + G + H T L +Y K +++ KVF +T+ +V WN MI G++
Sbjct: 193 VHAQIVIRGFTS--HTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLEKSCIVMRV------FVQ 117
D + + ++L ++ V D TF + K G RD+ + E S + + V
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVG 310
Query: 118 NALISTYCLCGEVDMARGIF---YMSC 141
ALI CG + AR IF +++C
Sbjct: 311 TALIDMNSKCGSLQEARSIFNSHFITC 337
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF-------------TRDI 101
WN MI GY R ++ + ++ + ++D+ D+YT+ +F R I
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
LE V V + NA+ + Y CG ++ R +F
Sbjct: 403 KSGLE----VNYVSISNAVANAYAKCGSLEDVRKVF 434
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 78/185 (42%), Gaps = 13/185 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K++H++ IK GL + G L+ KVF ++ + W +++ YS+
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ ++ ++ + + +TF + + + + G + K + M +
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514
Query: 117 QNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRIKA---VDDDLHELFPEYLVQML 172
++AL+ Y CG + A+ +F +S D +I A + DD +LF +VQ+
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRR-MVQLG 573
Query: 173 ALPDT 177
P+
Sbjct: 574 VEPNA 578
>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIA 102
S F WN++I GY+++ + + +Y +++ V D +TFP + K ++
Sbjct: 157 SAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVH 216
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ F+ NAL+ Y CG++ AR +F
Sbjct: 217 RHAIRAGFAADGFILNALVDMYSKCGDIVKARKVF 251
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 19/109 (17%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSR----IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97
++FR+I +P++ WN MI+G+S+ I++ +N LMY L +N T+PFL K
Sbjct: 751 ELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFG----NNLTYPFLLKAC 806
Query: 98 TRDIAGSLEKSCIVMRV---------FVQNALISTYCLCGEVDMARGIF 137
R ++ + + RV FV NALI Y E+ AR +F
Sbjct: 807 AR--ISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVF 853
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G+L K+F + V W +MI YS+ V ++ +++ + V+ D T
Sbjct: 974 KAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVAS 1033
Query: 93 LFKGFTR----DIAGS----LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ D+ + + K + ++V NALI YC CG V+ +F
Sbjct: 1034 VLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVF 1086
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF- 94
+L + KVF ++++ + WN++I GY R + ++++ ++ +DV+ D T +
Sbjct: 845 ELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVL 904
Query: 95 -------KGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + +E++ + + V++ N LI Y VD+AR +F
Sbjct: 905 ACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVF 954
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ Q++Q+H+Q G+L + Y Y + L +F + W+ M+
Sbjct: 75 LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRA-LDDAYGLFDGMCVRDSVSWSVMVG 133
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV------ 114
G++++ + N + +L++ R DNYT PF+ + RD+ +L+ ++ +
Sbjct: 134 GFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA-CRDLK-NLQMGRLIHHIVYKFGL 191
Query: 115 ----FVQNALISTYCLCGEVDMARGIF 137
FV AL+ Y C E++ AR +F
Sbjct: 192 DLDHFVCAALVDMYVKCREIEDARFLF 218
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCP-KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ Q++Q+H Q G+L K + Y D Y +F + W+ M+
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAY--GLFDGMCVRDSVSWSVMV 808
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV----- 114
G++++ + N + +L++ R DNYT PF+ + RD+ +L+ ++ +
Sbjct: 809 GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRA-CRDLK-NLQMGRLIHHIVYKFG 866
Query: 115 -----FVQNALISTYCLCGEVDMARGIF 137
FV AL+ Y C E++ AR +F
Sbjct: 867 LDLDHFVCAALVDMYGKCREIEDARFLF 894
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+HS IK+G+ + L LY K D++ + F +V LWN M+ Y
Sbjct: 334 KQLHSYVIKMGM--SSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYG 391
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
++ + ++L + + + YT+P + + T I + KS V+
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V + LI Y GE+D ARGI E+D
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREED 480
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q IK G + + + +Y K G+L + +++ + V W MI GY+
Sbjct: 435 EQIHTQVIKSGFQFNVYVC--SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYT 492
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFL---------------------FKGFTRDIA 102
+ D + ++ ++ +R DN F G++ D++
Sbjct: 493 QHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+ N LI+ Y CG ++ A+ F+
Sbjct: 553 --------IGNALASNVLITLYSKCGSIEDAKREFF 580
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
VF K+ V WNTMI GY R + + ++ + KS+V D YTF + G +
Sbjct: 98 VFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAK--L 155
Query: 103 GSLEKSCIVMRVFVQ----------NALISTYCLCGEVDMARGIF 137
G+L+ + V + ++ +ALI Y CG++ A+ IF
Sbjct: 156 GALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIF 200
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IHS + G + + Q + LY K D+K KVF + Q ++ WN++I GY
Sbjct: 145 KEIHSHVMVCGYGSDMYV--QAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYD 202
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV----------MR 113
+ + + ++ +++S + D+ T L ++ G+L+ C + +
Sbjct: 203 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ--LGALDFGCWLHDYADGNGFDLN 260
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V + +LI+ Y CG V AR +F
Sbjct: 261 VVLGTSLINMYTRCGNVSKAREVF 284
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFL 54
+ L+Q+H+ I GL ++R LL + G + Y ++F + P FL
Sbjct: 40 LRNLQQVHAHIIVSGL-------HRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFL 92
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLE 106
+++++K S+ + VL Y +L S + NYTF + K ++I +
Sbjct: 93 FDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM 152
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++VQ ALI+ Y ++ +A+ +F
Sbjct: 153 VCGYGSDMYVQAALIALYAKASDMKVAKKVF 183
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY----EKGDLKYECKVFRKITQPSVFLWN 56
M+ + ++H++ +K G + P R LLL L Y +F I P F +N
Sbjct: 1 MNHIYKLHARLLKTG---HHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFN 57
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-----DIAGSLEKSCIV 111
T+I+ ++ + + ++ + + V D++TFPF+ K R D+ L K
Sbjct: 58 TIIRAHADSSPSFS-LSLFSKMAMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFD 116
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V+VQN LI Y CG +D A +F
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKVF 142
>gi|449526313|ref|XP_004170158.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 706
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ L+QIH++ I G P ++ + Y G L + +VF + P++ L+N ++
Sbjct: 40 IQHLQQIHARFILHGFHQNP--TLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAIL 97
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
+ +R + +L+Y ++ + D T+PF+ + GF R I G L K
Sbjct: 98 RNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFD 157
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+ V AL Y C E + A +F D G + + +D E +M
Sbjct: 158 LFDVVATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRM 217
Query: 172 LA---LPDTF 178
+A +PD+F
Sbjct: 218 IAEQLVPDSF 227
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
T L LY K L K+F K+ + +WN MI Y+R + ++ + +S +
Sbjct: 264 NTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGI 323
Query: 84 RRDNYT-FPFLFK-------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
R D +T P + + + + ++ +V V N+LI YC C +D A
Sbjct: 324 RSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACK 383
Query: 136 IF 137
IF
Sbjct: 384 IF 385
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLK----YECKVFRKITQPSVFLWNTM 58
L+Q+H+Q I L H LL+ L+ Y +F P+VF++ +M
Sbjct: 16 HLRQLHAQIIHNSL----HHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSM 71
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRV---- 114
++ YS + H VLM+ + VR D + +P L K G + V+++
Sbjct: 72 LRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN---GGIGFHAHVLKLGHGS 128
Query: 115 --FVQNALISTYCLCGEVDMARGIF 137
FV+NA+I Y G + AR +F
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVF 153
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL+ + F + + SV WN M+ GY++ + + ++ +++ + + D T+ +
Sbjct: 209 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVIS 268
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ +L + I + FV+ AL+ Y CG + AR IF
Sbjct: 269 ACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIF 318
>gi|356507282|ref|XP_003522397.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Glycine max]
Length = 279
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H+ +K L P T+ + LY D+K VF K SV+LWN+MI+ ++
Sbjct: 23 KQLHAFLLKTHLSQDPF--YATKIVRLYAANNDIKSAHHVFDKTPNRSVYLWNSMIRAFA 80
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ + + ++ +L D+ D++T+ + + G R + G + + M
Sbjct: 81 QSQRFLSAISLFRTMLGDDISPDDHTYACVIRACADNFDFGMLRRVHGGAVAAGLEMDPI 140
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+AL++ Y G V A +F
Sbjct: 141 CCSALVAAYSKLGRVQEACRVF 162
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
L+++H + GL P C + + Y K G ++ C+VF I +P + LWN++I GY
Sbjct: 123 LRRVHGGAVAAGLEMDPICC--SALVAAYSKLGRVQEACRVFDGIAEPDLVLWNSLISGY 180
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98
G+ M+ + ++ D YT L G
Sbjct: 181 GGFGLWDVGMQMFSMMRLVGMKPDGYTLAGLLVGIA 216
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 48 TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----------- 96
T+ V LWN MI GY+ S G+ ++++L++SDV + TF G
Sbjct: 521 TKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKA 580
Query: 97 ---FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
F R + G +FV N LI + CG+++ AR IFY
Sbjct: 581 RGLFDRAVKGGFFPD-----LFVANTLIDVFAKCGDLEEARRIFY 620
>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H I+ G + + Y K D ++ KVF ++++ V WN+MI GYS
Sbjct: 152 RQVHGFVIRGGFDSDVFVGNGM--ITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYS 209
Query: 64 RIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK--GFTRDIAGSLE------KSCIVMRV 114
+ S ++ MY +L SD + + T +F+ G + D+ LE ++ I M +
Sbjct: 210 QSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDL 269
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ NA+I Y CG +D AR +F E D
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKD 299
>gi|449447755|ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 696
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+ ++ G +K ++F +IT+ V +W ++I G++ + + L Y + D R N
Sbjct: 261 MYFKCGKIKLARQMFGEITERDVVVWGSIIAGFAH-NRLQREALEYTRRMIDDGIRPNSV 319
Query: 90 -----FPFLFKGFTRDIAGSLEKSCIVMR-----VFVQNALISTYCLCGEVDMARGIFYM 139
P + + + R + + I + +F+Q+ALI YC CG++ R +FY
Sbjct: 320 ILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYA 379
Query: 140 SCEDD 144
S E +
Sbjct: 380 SMERN 384
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
M KQIH+ GL +TR + +Y G L+ K+F + + SV+ WN ++
Sbjct: 130 MTYAKQIHAHIRINGLENNEFI--RTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALL 187
Query: 60 KG---YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKS 108
+G R D +++ + Y ++ + V + Y+F + K F A G L K+
Sbjct: 188 RGTVMAGRRD-YRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFTQGLKAHGLLIKN 246
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++ + L+ Y CG++ +AR +F E D
Sbjct: 247 GLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERD 282
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+ +K L P+ + +++Y K G + Y K+F + Q +V LW MI Y
Sbjct: 440 KEIHAYAMKNCFL--PNVSIVSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSYI 497
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ ++ + S R D T + ++I G + K F
Sbjct: 498 ENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEIHGQVLKRKFEPVHF 557
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V L+ Y CG V MA+ +F
Sbjct: 558 VSAELVKLYGKCGAVKMAKMVF 579
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD-------- 100
P+V ++ +I G+ + K+ + ++ ++ +++ D YTF L GF +D
Sbjct: 227 SPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKT 286
Query: 101 IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + K I+ V N+L+ YCL EV+ A+ IF
Sbjct: 287 VFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIF 323
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H Q IK G L T + Y KG + K KVF ++ + +V W T+I GY+
Sbjct: 113 RQLHCQCIKFGFLDDVSVG--TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYA 170
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMR------VF 115
R + + +++ + + +++TF + G L+ +V++ +
Sbjct: 171 RNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIP 230
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+LI+ Y CG V AR +F
Sbjct: 231 VSNSLINLYLKCGNVRKARILF 252
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++H+Q +K + T L Y K G ++ KVF I + W+ M+ GY++
Sbjct: 414 EVHAQVVKTNY--ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---------GFTRDIAGSLEKSCIVMRVF 115
+ + M+ +L K ++ + +TF + G + G KS + +
Sbjct: 472 TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLC 531
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V +AL++ Y G ++ A +F E D
Sbjct: 532 VSSALLTMYAKKGNIESAEEVFKRQREKD 560
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M Q KQ H IK L C + +KG+++ +VF++ + + WN+MI
Sbjct: 511 MGQGKQFHGFAIK-SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMIS 569
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNAL 120
GY++ + ++ ++ K V+ D TF +F T AG +E+ + V++
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTH--AGLVEEGEKYFDIMVRDCK 627
Query: 121 IS 122
I+
Sbjct: 628 IA 629
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKI-TQPSVFLWNTMIKGY 62
+Q+H +K G L + +T ++ Y K + ++F++I +V W MI G+
Sbjct: 315 EQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGF 372
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF----TRDIAGSLEKSCIVMRVFVQN 118
+ D + V ++ ++ + VR + +T+ + ++ + K+ V
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGT 432
Query: 119 ALISTYCLCGEVDMARGIF 137
AL+ Y G+V+ A +F
Sbjct: 433 ALLDAYVKLGKVEEAAKVF 451
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 3 QLKQIHSQTIKLGLL--TKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTMI 59
Q+KQIH+Q + GL T P Y+ +L + VF + + P +WN MI
Sbjct: 70 QIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCR---NLSFARIVFDQFPSLPPTIIWNLMI 126
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLF---------KGFTRDIAGSLEKS 108
+ YS+ S + + ++ +L D YTF F+F +G+ ++ G + K
Sbjct: 127 QAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKD 186
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
+FV N+L++ Y + + A+ +F
Sbjct: 187 GYESDIFVGNSLVNMYSIFSRMVDAKRVF 215
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 42 KVFRKITQPSVFLWNTMIKGYS-RIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT- 98
+VF ++ Q V W +++KGY+ R + + + + D+L D V+ + +
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAH 272
Query: 99 -------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHE 149
+ I ++K+ I++ + ALI Y CG +D AR +F DGLH+
Sbjct: 273 LGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVF-------DGLHK 323
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYSR 64
+IH KLG + P QT + +Y + ++ F K+ P WN +I GY +
Sbjct: 142 EIHGLASKLGFVDDPFI--QTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQ 199
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ + + ++ D+ SD++ D+ + + R I ++ + + +
Sbjct: 200 NGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHL 259
Query: 117 QNALISTYCLCGEVDMARGIF 137
Q ALI+ Y CG +D+AR I+
Sbjct: 260 QTALINMYANCGAMDLARKIY 280
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 17 LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
L+ H T L Y K G +K +F ++ + + W+ MI GY+ D + + ++
Sbjct: 283 LSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLF 342
Query: 76 LDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLC 127
++L+ D T + + I +++S + V NALI Y C
Sbjct: 343 DEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKC 402
Query: 128 GEVDMARGIF 137
G + AR +F
Sbjct: 403 GNLVKAREVF 412
>gi|357453201|ref|XP_003596877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240912|gb|ABD32770.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485925|gb|AES67128.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT-QPSVFLWNTMI 59
++ LK IH++TI+LG+ +T+ + Y ++ + T + FL+N++I
Sbjct: 24 INSLKIIHARTIRLGISHDDFI--RTKLVSCYASCSKLHQANILFSFTNRKPTFLYNSLI 81
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ Y ++ K + ++ ++ S D +T P + K + + G++ +
Sbjct: 82 RAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQVHGAVLVNGFA 141
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
+ + NALI+ Y CGE++ AR +F CE ++
Sbjct: 142 LDLKNSNALINMYAKCGELEFARKVFDGMCERNE 175
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ------TRYLLLYEKGDLK---------YECKVFR 45
+ QL Q+H+ TI GLL H T + L + Y VF
Sbjct: 28 LKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAALTGYALSVFN 87
Query: 46 KITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL 105
+I PS F +NTMI+ ++ + S +++++ + + V D +TFPF K + A SL
Sbjct: 88 RIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSLLPALSL 147
Query: 106 EKSC--------IVMRVFVQNALISTY 124
++ +FV N LI Y
Sbjct: 148 AQTLHSQAFKFGFGADLFVCNTLIHVY 174
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFLWN 56
+LK+IH+ +K L Q+ +L+ G+ +Y +F+ + P+ FL+N
Sbjct: 74 ELKKIHAHIVKFSL-------SQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYN 126
Query: 57 TMIKGYSRIDSHKNGVLMYLDLL-----KSDVRRDNYTFPFLFKG--------FTRDIAG 103
MI+ Y + + +Y +L ++ + D +TFPF+ K + + G
Sbjct: 127 AMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHG 186
Query: 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ K V+N+L+ Y C +D A +F E D
Sbjct: 187 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERD 227
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQ--PSVFLWNTMIKG 61
KQ+H K G K + + + +Y K D L +VF ++T+ ++F W ++ G
Sbjct: 182 KQVHGHVFKFG--QKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSG 239
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIV 111
Y+RI + + + + + + D + + + G+LE K+ +
Sbjct: 240 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQ--LGALELGKWIHIYADKAGFL 297
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V NALI Y CG +D R +F
Sbjct: 298 RNICVCNALIEMYAKCGSIDQGRRLF 323
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIHS +KLG + T + Y K GD++ + F +I++P+ W+ +I G+S
Sbjct: 309 KQIHSHIVKLG--XESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFS 366
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
+ ++ + ++ L V +++ + +F+ G K +V ++
Sbjct: 367 QSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLY 426
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++A+++ Y CG +D AR F
Sbjct: 427 GESAMVTMYSKCGRLDYARRAF 448
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIHS I+ GL + T +Y K G L+ VF K+++ + W ++ GY+
Sbjct: 131 KQIHSHAIRSGL--GSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYT 188
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + + + ++ ++ V D Y F + K F R I G + K + V
Sbjct: 189 QAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVS 248
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V L+ Y C ++ A F E +D
Sbjct: 249 VGTPLVDFYVKCSNLESATKAFEWISEPND 278
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH +KLGL + T + Y K +L+ K F I++P+ W+ +I GY
Sbjct: 232 RQIHGHIVKLGL--ESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYC 289
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLE------KSCIVMRVF 115
++ + + + L V +++T+ +F+ + D + KS +V
Sbjct: 290 QMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQH 349
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDGL 147
++A+I+ Y CG +D A +F S +D D +
Sbjct: 350 GESAMITMYSRCGRLDYATRVF-ESIDDPDAV 380
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS IK + + L +Y K GDL +VF K+ + +V W +MI GY+
Sbjct: 133 KAVHSLAIKSSFERRINFSNTL--LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 190
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
R +++ + K V+ D + R D+ ++ + + +F
Sbjct: 191 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLF 250
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+ Y CG ++ A +F
Sbjct: 251 VCNALMDMYAKCGSMEGANSVF 272
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV--RRDNYTFPF 92
GDLK +VF + + +V+LWN M+ Y++I K + ++ +++ + +R
Sbjct: 10 GDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASEL 69
Query: 93 LFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K RD V N++IS Y G + GI+
Sbjct: 70 FDKLCDRD-------------VISWNSMISGYVSNGLTERGLGIY 101
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F K+ V WN+MI GY + G+ +Y ++ + D T + G +
Sbjct: 68 ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSG 127
Query: 102 AGSLE--------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
SL KS R+ N L+ Y CG++D A +F
Sbjct: 128 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 171
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
G L K F + + WN ++ GY+R + ++++ D+L S V D T
Sbjct: 309 NAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVT 368
Query: 93 LFKGF--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
L R + G + K F+ +AL+ YC CG + +A +F + + D
Sbjct: 369 LISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKD 428
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
KQ+H+ + GL ++ + + + + + GD++ +FR N M+ GY +
Sbjct: 148 KQVHAHVVVTGLHSRVYL-RNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVK 206
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC---IVMRVFV----- 116
+ + + + D YT L R L +S +V R+ V
Sbjct: 207 GGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGL 266
Query: 117 --QNALISTYCLCGEVDMARGIFYMSCEDD 144
NAL+ Y CGE++ A +F + E D
Sbjct: 267 ILSNALLDMYAKCGEMNTAMRVFDEAGERD 296
>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 722
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ L+QIH++ I G P ++ + Y G L + +VF + P++ L+N ++
Sbjct: 40 IQHLQQIHARFILHGFHQNP--TLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAIL 97
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
+ +R + +L+Y ++ + D T+PF+ + GF R I G L K
Sbjct: 98 RNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFD 157
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+ V AL Y C E + A +F D G + + +D E +M
Sbjct: 158 LFDVVATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRM 217
Query: 172 LA---LPDTF 178
+A +PD+F
Sbjct: 218 IAEQLVPDSF 227
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L CK+F +T SV W+ MIKGY + + ++ + ++ D +
Sbjct: 378 LDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPA 437
Query: 97 FTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
F G+LE K + + AL+ TY CG ++MA+ +F DD
Sbjct: 438 FVH--IGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKD 495
Query: 147 L---HELIRIKAVDDDLHELFPEY 167
L + +I A D + F Y
Sbjct: 496 LIMWNSMISAHANHGDWSQCFKLY 519
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
T L LY K L K+F K+ + +WN MI Y+R + ++ + +S +
Sbjct: 264 NTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGI 323
Query: 84 RRDNYT-FPFLFK-------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARG 135
R D +T P + + + + ++ +V V N+LI YC C +D A
Sbjct: 324 RSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACK 383
Query: 136 IF 137
IF
Sbjct: 384 IF 385
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y VF I +P++ +WNTM +G++ + + +Y+ ++ + ++YTFPFL K
Sbjct: 13 LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72
Query: 97 FTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ I G + K + ++V +LIS Y ++ A +F S D
Sbjct: 73 CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+G ++ +F +I V WN MI GY ++K + ++ +++K++VR D T +
Sbjct: 142 RGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTV 201
Query: 94 FKGFTRDIAGSLE-----KSCIVMRVF-----VQNALISTYCLCGEVDMARGIF 137
R +GS+E S I F + NALI Y CGE++ A G+F
Sbjct: 202 ISASAR--SGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLF 253
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+++ C +F ++ V WN +I GY+ ++ +K +L++ ++L+S ++ T +
Sbjct: 244 GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303
Query: 95 KG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVF 356
>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE---- 106
S F WN++I GY+++ + + +Y +++ V D +TFP + K GS++
Sbjct: 157 SAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAG--IGSVQVGEE 214
Query: 107 ------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++ F+ NAL+ Y CG++ AR +F
Sbjct: 215 VHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVF 251
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH ++ G + +Y K G + Y ++F ++ + + WNT+I G +
Sbjct: 317 KQIHGAVVRFGW--DQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCA 374
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT---------RDIAGSLEKSCIVMRV 114
R + + +++DLL+S + D +T + + + R + K+ IV+
Sbjct: 375 RSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDS 434
Query: 115 FVQNALISTYCLCGEVDMARGIFY 138
FV ALI Y G+++ A +F+
Sbjct: 435 FVSTALIDVYSKGGKMEEAELLFH 458
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQIH+ IK+ + L +Y K G++K KVF +I P W T+I
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVI--SGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVI 573
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G + + Y + + V+ D YTF L K + + I ++ K
Sbjct: 574 SGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCA 633
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FV +L+ Y CG ++ A G+F
Sbjct: 634 FDPFVMTSLVDMYAKCGNIEDAYGLF 659
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q KQIH+ +KL P T + +Y K G+++ +FR++ SV LWN MI
Sbjct: 617 LEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMI 674
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
G ++ + + + + ++ V D TF
Sbjct: 675 VGLAQHGNAEEALNFFNEMKSRGVTPDRVTF 705
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYS 63
+Q+H+ +K G++ T + +Y KG E ++ F + WN M+ G++
Sbjct: 419 RQVHTCALKAGIVLDSFVS--TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT 476
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---FTRDIAGS-LEKSCIVMR----VF 115
D+++ + ++ + + + D TF K R G + I MR +F
Sbjct: 477 VSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLF 536
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V + ++ Y CGE+ AR +F
Sbjct: 537 VISGILDMYLKCGEMKSARKVF 558
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IHS + G + + Q + LY K D+K KVF + Q ++ WN++I GY
Sbjct: 209 KEIHSHVMVCGYGSDMYV--QAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYD 266
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIV----------MR 113
+ + + ++ +++S + D+ T L ++ G+L+ C + +
Sbjct: 267 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ--LGALDFGCWLHDYADGNGFDLN 324
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V + +LI+ Y CG V AR +F
Sbjct: 325 VVLGTSLINMYTRCGNVSKAREVF 348
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL------LYEKGDLKYECKVFRKITQPSVFL 54
+ L+Q+H+ I GL ++R LL + G + Y ++F + P FL
Sbjct: 104 LRNLQQVHAHIIVSGL-------HRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFL 156
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLE 106
+++++K S+ + VL Y +L S + NYTF + K ++I +
Sbjct: 157 FDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM 216
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++VQ ALI+ Y ++ +A+ +F
Sbjct: 217 VCGYGSDMYVQAALIALYAKASDMKVAKKVF 247
>gi|218193846|gb|EEC76273.1| hypothetical protein OsI_13747 [Oryza sativa Indica Group]
Length = 602
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H+ +K GL + + +Y K L K+F + + + WN MI G +
Sbjct: 268 QLHTLAVKYGL--ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFV 116
+L++ D+ KS +R D+ T L T +++ G + ++C+ M VF+
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C V MA+ ++
Sbjct: 386 VSALVDIYFKCRAVRMAQSVY 406
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+YEK G++ +VF I V WN MI GY++ + ++ ++ K+ V D T
Sbjct: 274 MYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKIT 333
Query: 90 FPFLFKGFTRDIAGSLE--------KSC--IVMRVFVQNALISTYCLCGEVDMARGIFY- 138
+ + G+LE SC + V+V AL+ Y CG++D A +F
Sbjct: 334 LAGVLSACS--AVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRK 391
Query: 139 MSCEDDDGLHELI 151
M C++ + LI
Sbjct: 392 MRCKNVASWNALI 404
>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 677
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR--RDNYTFPF 92
G + Y K+F ++ Q S+ +N +I+ Y R + + + +++ ++ V+ D YT+PF
Sbjct: 63 GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPF 122
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + G + +S +VQNAL++ Y G+V+MAR +F
Sbjct: 123 VAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVF 175
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 10 QTIKLGLLTKPHCPK---------QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+++KLGL+ + Q L +Y G ++ VF + V WNTMI
Sbjct: 131 KSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMI 190
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
GY R + ++M+ ++ V D+ T + R++ +E+ +
Sbjct: 191 SGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLG 250
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
++ V+NAL++ Y CG +D AR +F
Sbjct: 251 DKIEVKNALVNMYLKCGRMDEARFVF 276
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
K +HS+ + G + T + +Y K +C+ VF K+ + WNTMI G +
Sbjct: 247 KAVHSRILNAG--HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ +Y + + V + T+ L + ++I + K+ +
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364
Query: 116 VQNALISTYCLCGEVDMARGIF 137
VQNALIS Y CG + AR +F
Sbjct: 365 VQNALISMYSRCGSIKDARLVF 386
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++IH Q ++ GL T H T + G +K +VF ++ Q + +N MI GY+
Sbjct: 449 RRIHQQVVEAGLATDAHVG-NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAA 507
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFV 116
+ K + ++ L + ++ D T+ + + R+I + K V
Sbjct: 508 HNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSV 567
Query: 117 QNALISTYCLCGEVDMARGIF 137
NAL+STY CG A +F
Sbjct: 568 GNALVSTYAKCGSFSDASIVF 588
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+HS IK+G+ + L LY K D++ + F +V LWN M+ Y
Sbjct: 334 KQLHSYVIKMGM--SSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYG 391
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
++ + ++L + + + YT+P + + T I + KS V+
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V + LI Y GE+D ARGI E+D
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREED 480
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q IK G + + + +Y K G+L + +++ + V W MI GY+
Sbjct: 435 EQIHTQVIKSGFQFNVYVC--SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYT 492
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ D + ++ ++ +R DN F + I S +
Sbjct: 493 QHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDDDG 146
+ NAL+S Y CG A Y++ E D
Sbjct: 553 IGNALVSLYARCGRAQDA----YLAFEKIDA 579
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 3 QLKQIHSQTIKLGLLTKPH-CPK-QTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ K++H+ + LG+ + + C K T Y + Y +F K++QP +F WN M++
Sbjct: 29 ETKRLHALILTLGIFSSSNLCSKLATTYAQCHHA---SYASHLFDKLSQPCLFSWNAMMR 85
Query: 61 GYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y +I + + +++++L S D +T+P + K I G K
Sbjct: 86 MYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYD 145
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
FVQN L++ Y GE + A+ +F
Sbjct: 146 SDTFVQNTLLAMYMNAGEKEAAQLVF 171
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH QT K G + Q L +Y G+ + VF + + +V WNTMI GY R
Sbjct: 135 IHGQTFKFGYDSDTFV--QNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRN 192
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQ 117
+ ++ V +Y ++ V D T + R++ +++ + V+
Sbjct: 193 NCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVR 252
Query: 118 NALISTYCLCGEVDMA 133
NAL+ Y CG++ A
Sbjct: 253 NALVDMYVKCGQMKEA 268
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 25 QTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
+T + +Y K G+L Y KVF ++ WN ++ G+ + + + ++ +L
Sbjct: 353 ETALINMYAKCNCGNLSY--KVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVK 410
Query: 82 DVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
DV+ D+ TF L + +I L +S + R+ V + L+ Y CG + A
Sbjct: 411 DVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYA 470
Query: 134 RGIF-YMSCEDDD 145
IF +S +D D
Sbjct: 471 HQIFNIISLKDKD 483
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+YEK G++ +VF I V WN MI GY++ + ++ ++ K+ V D T
Sbjct: 274 MYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKIT 333
Query: 90 FPFLFKGFTRDIAGSLE--------KSC--IVMRVFVQNALISTYCLCGEVDMARGIFY- 138
+ + G+LE SC + V+V AL+ Y CG++D A +F
Sbjct: 334 LAGVLSACS--AVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRK 391
Query: 139 MSCEDDDGLHELI 151
M C++ + LI
Sbjct: 392 MRCKNVASWNALI 404
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
Q+H + GL + P L +Y K G L ++F + + + WN MI GY
Sbjct: 268 SQLHGLVVSSGL--EMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYV 325
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTF----PFLFKGFT----RDIAGSLEKSCIVMRVF 115
+ ++ +++ + ++ D+ TF P L +G T ++I + ++ + + VF
Sbjct: 326 QNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVF 385
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+++ALI Y C +V+MAR IF
Sbjct: 386 LKSALIDIYFKCRDVEMARKIF 407
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLE 106
WN MI+G++ + +L Y +L D YTFP++ K R + ++
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ VFV ++LI Y G + AR +F
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLF 205
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------- 95
+F ++ LWN M+ GY + N +++++ +++ ++ TF +
Sbjct: 204 LFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIM 263
Query: 96 -GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
F + G + S + M V N L++ Y CG + AR +F M
Sbjct: 264 INFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDM 308
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEK 107
+V WN++I GY+++ + + ++ + SD+R D +TF G T D+ G L
Sbjct: 5 NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 64
Query: 108 SCIVMR-----VFVQNALISTYCLCGEVDMARGIFYMSCE-DDDGLHELI----RIKAVD 157
+ I + V + N+LI YC CG +D AR +F + E D + LI RI + +
Sbjct: 65 ALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGS-N 123
Query: 158 DDLHELFPEYLVQMLALPDTFMGEGLEV 185
D++ L + L L L +G L+
Sbjct: 124 DEMLRLLVKMLRHGLNLNSYALGSALKA 151
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +H +KLGL T L Y K GDL+ K+F+ + P+V ++N MI G+
Sbjct: 164 KMLHGCAVKLGL--DLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 221
Query: 64 RIDSHKN-----GVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCI 110
++++ + + ++ ++ ++ +TF + K + + I + K +
Sbjct: 222 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNL 281
Query: 111 VMRVFVQNALISTYCLCGEVD 131
F+ NAL+ Y L G ++
Sbjct: 282 QSDEFIGNALVELYSLSGSIE 302
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G + + VF + WN++I GY RI S+ + + + +L+ + ++Y
Sbjct: 90 GRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSAL 149
Query: 95 KGFTRDIAGSLE-----KSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
K + + S+E C V + V V AL+ TY G+++ A IF
Sbjct: 150 KACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIF 202
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH+Q K L + + LY G ++ K F + V W ++I G+
Sbjct: 270 KQIHAQIFKYNLQSDEFIGNA--LVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHV 327
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ + G+ ++ +LL S + D +T + I K+ I
Sbjct: 328 QNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTI 387
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+QN+ I Y CG++D A F
Sbjct: 388 IQNSQICMYAKCGDIDSANMTF 409
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS IK + + L +Y K GDL +VF K+ + +V W +MI GY+
Sbjct: 271 KAVHSLAIKSSFERRINFSNT--LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
R +++ + K V+ D + R D+ ++ + + +F
Sbjct: 329 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLF 388
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+ Y CG ++ A +F
Sbjct: 389 VCNALMDMYAKCGSMEGANSVF 410
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 53 FLWNTMIKGYSRIDSHKNG-----VLMYLDLLKSDVRRDNYTFPFLFKGFT--------R 99
FLWNT+I+ + + + G + +++ + V+ D +TFPFL + F R
Sbjct: 25 FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84
Query: 100 DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + + + + FVQ +LIS Y CG + AR +F
Sbjct: 85 SVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVF 122
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 49/182 (26%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP--------- 50
+H + +H+Q ++ GL P QT + +Y G+L + +VF +I QP
Sbjct: 80 LHLGRSVHAQILRFGLAIDPFV--QTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSII 137
Query: 51 ----------------------SVFLWNTMIKGYSRIDSHKNGVLMYLD---LLKSDVRR 85
+V W+ MI GY R +K + ++ + L +DVR
Sbjct: 138 NANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRP 197
Query: 86 DNYTFPFLFKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARG 135
+ +T + R G+LE K + + V + ALI Y CG V+ A
Sbjct: 198 NEFTMSGVLAACGR--LGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATW 255
Query: 136 IF 137
+F
Sbjct: 256 VF 257
>gi|359473776|ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Vitis vinifera]
Length = 835
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIHS +KLG + T + Y K GD++ + F +I++P+ W+ +I G+S
Sbjct: 309 RQIHSHIVKLG--AESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFS 366
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
+ ++ + ++ L V +++ + +F+ G K +V ++
Sbjct: 367 QSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLY 426
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++A+++ Y CG +D AR F
Sbjct: 427 GESAMVTMYSKCGRLDYARRAF 448
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR-- 99
+F KI +PSV WNT++ GY + + H+ + ++ + +V+ D T + +R
Sbjct: 272 AMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLG 331
Query: 100 --DIAGSLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++ + + + + +FV + LI Y CG+V +A IF M E D
Sbjct: 332 NFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERD 382
>gi|357453189|ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359886|gb|ABD32760.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485919|gb|AES67122.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT-QPSVFLWNTMI 59
++ LK IH++TI+LG+ +T+ + Y ++ + T + FL+N++I
Sbjct: 24 INSLKIIHARTIRLGISHDDFI--RTKLVSCYASCSKLHQANILFSFTNRKPTFLYNSLI 81
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ Y ++ K + ++ ++ S D +T P + K + + G++ +
Sbjct: 82 RAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQVHGAVLVNGFA 141
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
+ + NALI+ Y CGE++ AR +F CE ++
Sbjct: 142 LDLKNSNALINMYAKCGELEFARKVFDGMCERNE 175
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKIT-QPSVFLWNT 57
+++L++IH+ I LGL + + +Y E VFR+++ +V+LWN+
Sbjct: 20 LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPAS---SLSVFRRVSPAKNVYLWNS 76
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIAGSLEKSCIVM- 112
+I+ +S+ + Y L +S V D YTFP + K F ++ + + + M
Sbjct: 77 IIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMG 136
Query: 113 ---RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDL--HELFPEY 167
+FV NAL+ Y G + AR +F D+ + +L+ ++ H + E
Sbjct: 137 FESDLFVGNALVDMYSRMGLLTRARQVF-----DEMPVRDLVSWNSLISGYSSHGYYEEA 191
Query: 168 LVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNL 202
L L +++ ++P S P GNL
Sbjct: 192 LEIYHELKNSW------IVPDSFTVSSVLPAFGNL 220
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTR 99
+VF ++ +NTMI GY +++ + V M+L+ L + D T + + G R
Sbjct: 263 RVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLR 321
Query: 100 DIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIR 152
D++ + K+ V+ V+N LI Y CG++ AR +F M C+D + +I
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381
Query: 153 IKAVDDDLHELFPEYLVQML 172
DL E + + M+
Sbjct: 382 GYIQSGDLMEAMKLFKMMMI 401
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS IK G+ + +Y K G++ K+F + WNT+I
Sbjct: 428 KGLHSNGIKSGICIDLSVSNAL--IDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACV 485
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR------VF 115
R G+ + + KS+V D TF A L K C ++R +
Sbjct: 486 RFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ NALI Y CG ++ + +F
Sbjct: 546 IGNALIEMYSKCGCLENSSRVF 567
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLL--YEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
K I++ +K G + + R +L+ Y K GD+ VF + WN++I G
Sbjct: 327 KYIYNYMLKAGFVLE----STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
Y + + ++ ++ + + D+ T+ L F + + + KS I +
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI Y CGEV + IF
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIF 466
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H KQIH+Q + LGL ++ + +Y K G L F ++ S W +I
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNA--LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
GY + H+ + ++ D+ ++ +R D TF + K G R + L +S
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VF + L+ Y CG +D A F
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTF 496
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H + ++ GL +P T + +Y K GD+ +F ++ + +V W +I GY+
Sbjct: 168 QKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYA 225
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ------ 117
+ + + + +++V + TF + +G T A LE V R +Q
Sbjct: 226 QQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAA--LEHGKKVHRYIIQSGYGRE 283
Query: 118 ----NALISTYCLCGEVDMARGIF 137
N+LI+ YC CG ++ AR +F
Sbjct: 284 LWVVNSLITMYCKCGGLEEARKLF 307
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF---- 90
G L+ K+F + V W M+ GY+++ H + ++ + + ++ D TF
Sbjct: 298 GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL 357
Query: 91 ------PFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FL +G + I L + + V++Q+AL+S Y CG +D A +F
Sbjct: 358 TSCSSPAFLQEG--KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q +++H+ +K G+ +P+ + L +Y K G L +VF I ++ W MI
Sbjct: 63 LEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+ + + + Y + + + D TF L FT + + + ++ +
Sbjct: 121 EAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE 180
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ V +L+ Y CG++ AR IF
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIF 206
>gi|449482323|ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 716
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+ ++ G +K ++F +IT+ V +W ++I G++ + + L Y + D R N
Sbjct: 261 MYFKCGKIKLARQMFGEITERDVVVWGSIIAGFAH-NRLQREALEYTRRMIDDGIRPNSV 319
Query: 90 -----FPFLFKGFTRDIAGSLEKSCIVMR-----VFVQNALISTYCLCGEVDMARGIFYM 139
P + + + R + + I + +F+Q+ALI YC CG++ R +FY
Sbjct: 320 ILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYA 379
Query: 140 SCEDD 144
S E +
Sbjct: 380 SMERN 384
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
M KQIH+ GL +TR + +Y G L+ K+F + + SV+ WN ++
Sbjct: 130 MTYAKQIHAHIRINGLENNEFI--RTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALL 187
Query: 60 KG---YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKS 108
+G R D +++ + Y ++ + V + Y+F + K F A G L K+
Sbjct: 188 RGTVMAGRRD-YRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFTQGLKAHGLLIKN 246
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++ + L+ Y CG++ +AR +F E D
Sbjct: 247 GLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERD 282
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+ +K L P+ + +++Y K G + Y K+F + Q +V LW MI Y
Sbjct: 440 KEIHAYAMKNCFL--PNVSIVSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSYI 497
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ ++ + S R D T + ++I G + K F
Sbjct: 498 ENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEIHGQVLKRKFEPVHF 557
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V L+ Y CG V MA+ +F
Sbjct: 558 VSAELVKLYGKCGAVKMAKMVF 579
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQP--SVFLWNTMIKGY 62
+Q+H+Q ++ GL + QT L LY K + + P S+ W+ MI GY
Sbjct: 146 RQLHAQALRQGLEASAYV--QTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGY 203
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVM 112
SR+ + ++ ++ V D T + + AG+L+ + I +
Sbjct: 204 SRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAK--AGALDLGKWVHAYIDRKGITV 261
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + ALI Y CG ++ ARG+F E D
Sbjct: 262 DLELSTALIDMYAKCGLIERARGVFDAMVEKD 293
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+ Y +F +IT +V +N MI+ Y +++ +L++ + DNYT+P +
Sbjct: 85 GEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVL 144
Query: 95 KGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K + I G++ K + M +++ N L+S Y C +D AR +
Sbjct: 145 KACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVL 195
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYL----LLYEKGDLKYECK-------VFRKITQPSV--F 53
I S+ + LG + H K++ L +L L C VF +I P +
Sbjct: 10 IRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPI 69
Query: 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSL 105
W+ MI+ Y+ D + + +Y +L S VR YT+PF+ K + I +
Sbjct: 70 AWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHV 129
Query: 106 EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
S ++V AL+ Y CGE++MA +F
Sbjct: 130 NCSDFATDMYVCTALVDFYAKCGELEMAIKVF 161
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 23 PKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
P Q + +Y K G L+ C VF ++++ + WN ++ G+++ +L++ ++ K+
Sbjct: 384 PSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKA 443
Query: 82 DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
R D+ T L + + I + KSC+ + + AL+ Y CG++ A
Sbjct: 444 RQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSA 503
Query: 134 RGIF 137
+ F
Sbjct: 504 QKCF 507
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
KVF + +V W TMI Y+R H MY + + ++ + T L G +
Sbjct: 104 KVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELV 163
Query: 102 AGSLEKSCIVMRVF-----VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKA 155
+C++ F + N++++ YC CG V+ A+ +F M D + L+ A
Sbjct: 164 HLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223
Query: 156 VDDDLHELFPEYLVQM 171
++ E+ + L++M
Sbjct: 224 QLGNIREVL-QLLIRM 238
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +H ++ GL H +T + +Y K G++ ++F + V W MI G
Sbjct: 267 KMVHGHILRAGLEQDSHI--ETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ D V ++ +LKS V T + + G + + I + +
Sbjct: 325 QNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIP 384
Query: 116 VQNALISTYCLCGEVDMARGIF 137
QN+L++ Y CG ++ + +F
Sbjct: 385 SQNSLVTMYAKCGHLEQSCSVF 406
>gi|449439735|ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
gi|449514868|ref|XP_004164502.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 601
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H+ I +G + QT + +Y K +L+ +VF + + SV WN+MI YSR
Sbjct: 75 LHAHLIHVGFESDVFV--QTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRS 132
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF---------- 115
+ ++ ++L ++ TF L GF GSL + ++
Sbjct: 133 FRVNEALKLFREMLGGGFEPNSSTFVSLLSGFADPTHGSLFQGRLLHGCLTKFQLHDDTP 192
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCE 142
V+N+L+ Y G++D A +FY E
Sbjct: 193 VENSLVQMYVNFGQIDSACSVFYAISE 219
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K GDL VF +++ S++ W +MI GY+ + + ++ +++VR +
Sbjct: 301 MYSKCGDLLSARAVFDLLSEKSIYSWTSMISGYANAGYPREALSLFSMATQNNVRPNGAM 360
Query: 90 FPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R+I +++ + V +LI YC G ++ A +F
Sbjct: 361 LATAISACADLGSLSMRREIEAFIQQDGLASDSQVSTSLIHLYCKFGSIEKAEKVF 416
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 29 LLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
L LY K G++ ++F ++ + + W+ MI Y++ D K + ++L + ++ V +N
Sbjct: 279 LELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNN 338
Query: 88 YTFPFLFKGFTRDIAGSLEK---SCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
+TF + + ++ L K SC++ VFV NA++ Y CGE++ + +F
Sbjct: 339 FTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLF 396
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIHS +K GL + + +Y K G+++ K+F ++ + WNT+I GY
Sbjct: 358 KQIHSCVLKFGLNSNVFVSNAI--MDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYV 415
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG---SLEKSCIVMRVF----- 115
++ + + ++ +L+ D++ T+ + + + +A L+ + ++
Sbjct: 416 QLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRA-SASLAALEPGLQIHSLTIKTMYNKDT 474
Query: 116 -VQNALISTYCLCGEVDMARGIF 137
V N+LI Y CG ++ AR F
Sbjct: 475 VVANSLIDMYAKCGRINDARLTF 497
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++ +VFR++ WN++I Y+++ + ++ ++ S V T +
Sbjct: 236 GDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELTLVSVL 295
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDD 145
T + + G L ++ +V NAL+ Y CG +++AR +F MS D
Sbjct: 296 GACTEIGELELGKGVHGYLSSKGVLADGYVGNALVDMYAKCGSLELARQVFESMSTRDIT 355
Query: 146 GLHELI---RIKAVDDDLHELFPEYLVQMLALPD--TFMG 180
+ +I + + ELF V+ PD TF+G
Sbjct: 356 CWNAMIVGLSVHGYSREALELFNVMRVE----PDHVTFLG 391
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR-- 99
+F+KI++ WN+MI G S ++S N L + ++ S + +++ + +
Sbjct: 474 IFKKISKQDTVCWNSMIAGLS-LNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLS 532
Query: 100 ------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIR 152
I + K V V+V +AL+ YC CGEV AR F MS ++ +E+I
Sbjct: 533 SLIHGKQIHAQIAKEGFVNDVYVGSALVDMYCKCGEVGEARQFFDIMSSKNTVTWNEMIH 592
Query: 153 IKAVDDDLHELFPEY 167
A + HE Y
Sbjct: 593 GYAQNGHGHEAVCLY 607
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
GD++ ++F + P V WN M+ GY +I++H + ++ ++ +V+ D T +
Sbjct: 364 SGDIEIGRQIFDCMACPGVSSWNGMLSGYFQIENHNEAIKLFREMQFQNVKPDRTTLAII 423
Query: 94 FKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + +K+ ++V + LI Y CG++D+A IF
Sbjct: 424 LSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIF 475
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ +L++IH+ I GL P K + + G L Y +F ++ P WN++I
Sbjct: 17 LKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSII 76
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTR--------DIAGSLEKSCI 110
+G+++ S + ++ Y ++ D +TF F+ K R ++ GS+ +
Sbjct: 77 RGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGY 136
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF-------------YMSCEDDDGLHE 149
V V L+ Y G V +AR +F +SC GLH+
Sbjct: 137 DADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQ 188
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
+VF K+ + WN MI +S+ H+ + Y + +V D +T L
Sbjct: 161 QVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAH-- 218
Query: 102 AGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIF 137
G+L + R ++V NALI Y CG +D A IF
Sbjct: 219 LGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIF 264
>gi|449460648|ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Cucumis sativus]
Length = 696
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+Q +K G + QT + Y DL+ KVFR V WNTMI G +
Sbjct: 131 IHAQVVKCGFVHDVRV--QTALIGTYSHCLDLESAGKVFRWTIDKDVVTWNTMIFGNLKH 188
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQ 117
D + ++ +L + +T+ + F R I G + S ++ +Q
Sbjct: 189 DKLNEALRLFNQMLGIGLIPTQFTYAMILNICCRNGDYLFGRLIHGRIITSNAIIDRTLQ 248
Query: 118 NALISTYCLCGEVDMARGIF 137
N L+ YC CG++ A IF
Sbjct: 249 NVLLDLYCNCGDIHTAFCIF 268
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 29 LLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
L +Y + +E KVF K+ Q ++ +N +I YSR H L ++ + + N
Sbjct: 49 LSMYARCGAIWESQKVFEKMPQRNLVSFNALIAAYSRSHGHAPLAFNLLSQMELEFLKPN 108
Query: 88 -YTFPFLFKG--FTRD------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+T L + FT D I + K V V VQ ALI TY C +++ A +F
Sbjct: 109 SFTITSLLQAASFTEDPFWSSLIHAQVVKCGFVHDVRVQTALIGTYSHCLDLESAGKVFR 168
Query: 139 MSCEDD 144
+ + D
Sbjct: 169 WTIDKD 174
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 1 MHQLKQIHSQTIKLGLLTKP-----HCPKQTRYLLLYEKGDLKYECKVFRKITQPS--VF 53
+ +L QIH+ +K GL P + ++ + PS F
Sbjct: 31 LSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAF 90
Query: 54 LWNTMIKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGS 104
L+NT+I+ YS+ DS N L Y +L+ V + +TFPF+ KG + + G
Sbjct: 91 LFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGC 150
Query: 105 LEKSCIVMRVFVQNALISTYCLCGE 129
+ K V V N LI YC GE
Sbjct: 151 VVKFGFEEDVHVLNTLIHMYCCLGE 175
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
K +H +K G H Y L E G ++ KVF + W+ MI G+
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDG-FEFAEKVFDDSPKMDTVTWSAMIAGF 203
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
R+ V ++ ++ V D T + + + +EK I V
Sbjct: 204 VRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSV 263
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
+ NALI + CG VD A +F
Sbjct: 264 ELCNALIDMFAKCGNVDKAIKLF 286
>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g36980, mitochondrial; Flags: Precursor
gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 625
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G + +VF + + WNTM+ YSR+ H+ + ++ L SD + D+Y+F
Sbjct: 14 LAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSF 73
Query: 91 PFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142
+ F R I + +S + V N+LI Y C + A +F C
Sbjct: 74 TAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCC 133
Query: 143 D 143
D
Sbjct: 134 D 134
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G+ + +VF + ++ W TMI GY R + + +++++KS V D++ + +
Sbjct: 285 GETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVL 344
Query: 95 K--------GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G + I G L +V NAL++ Y CG++ A F
Sbjct: 345 HACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAF 395
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K IH I G + + + LY K GD+K + F I + WNTM+ +
Sbjct: 357 KMIHGCLIHCGF--QGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFG 414
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQN 118
+ +Y +++ S ++ DN TF L T +G +E+ C++ V++
Sbjct: 415 VHGLADQALKLYDNMIASGIKPDNVTFIGLLT--TCSHSGLVEEGCMIFESMVKD 467
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+ +K GL + + + LY K G + KVF T+ ++ +WN ++ G+
Sbjct: 344 RQIHATAVKHGL--DANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFV 401
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIAGSLEKSCIVMR------ 113
+ + + + M+ + ++D+ D++TF + ++ D+ + CI ++
Sbjct: 402 QNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVH--CITIKNGMDAD 459
Query: 114 VFVQNALISTYCLCGEVDMARGIFYM 139
+FV NA++ Y G +D+A+ +F +
Sbjct: 460 LFVANAMLDMYSKLGAIDVAKALFSL 485
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTMIKGYS 63
KQ+H T+K +L + + + + L+ K+ ++ ++ W I GY+
Sbjct: 647 KQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYA 706
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ ++M+ + DVR D TF + K + ++I G + KS V
Sbjct: 707 QNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYET 766
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+AL+ Y CG+V + IF
Sbjct: 767 ATSALMDMYSKCGDVISSFEIF 788
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR--IDSHKNGVLMYLDLLKSDVRRDNY 88
L G L + ++I S WN +I YS+ +DS G +Y D+ K +
Sbjct: 268 LASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFG--LYKDMKKQGLMPTRS 325
Query: 89 TFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS 140
TF + R I + K + VFV ++LI+ Y G + A+ +F S
Sbjct: 326 TFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFS 385
Query: 141 CEDDDGLHELIRIKAVDDDLHE 162
E + + I V ++L E
Sbjct: 386 TEKNIVMWNAILYGFVQNELQE 407
>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 20 PHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78
PH +T L +Y K G +K +F ++T ++ WN MI Y + + + ++L+L
Sbjct: 344 PHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLEL 403
Query: 79 LKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF-----------VQNALISTYCLC 127
L + D +T + F + L + C M + V NA++ Y C
Sbjct: 404 LNQPLYPDYFTMSAVVPAF---VLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARC 460
Query: 128 GEVDMARGIF 137
G+V +R IF
Sbjct: 461 GDVVSSRKIF 470
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 48 TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEK 107
+ P FL N +I+G++ + + Y +L + R D +TFP + K R G+LE+
Sbjct: 68 SSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCAR--LGALEE 125
Query: 108 -----------SCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V+ N+L++ Y G V A +F
Sbjct: 126 GRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVF 166
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 21/186 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQ--PSVFL 54
K IH +K L + H T + + +EK +LK VF K+ +V L
Sbjct: 29 KLIHQHLLKC--LHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVL 86
Query: 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLE 106
WN +I+ Y+ ++ + +Y +L + + +TFPF+ K + R+I ++
Sbjct: 87 WNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIK 146
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFP 165
+ + V+V AL+ Y CG +D A+ +F M D + +I ++ + ++
Sbjct: 147 RLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVA 206
Query: 166 EYLVQM 171
LVQM
Sbjct: 207 RLLVQM 212
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--- 98
+VF K+ + V WN+MI G+S + + V L +++DV ++ T +
Sbjct: 175 EVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVN 234
Query: 99 -----RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS--CEDDDGLHELI 151
++I G + V V V ++ Y C +D AR IF M +++ ++
Sbjct: 235 SLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMV 294
Query: 152 RIKAVDDDLHELFPEYLVQMLALPD 176
V D + E E Q+L L D
Sbjct: 295 GAYVVCDFMREAL-ELFCQLLMLKD 318
>gi|2244928|emb|CAB10350.1| hypothetical protein [Arabidopsis thaliana]
gi|7268320|emb|CAB78614.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H+ T+KLG + Y+ L E + K+F ++ +P+V W ++I GY+
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTAR---KLFDEMCEPNVVSWTSVISGYND 107
Query: 65 IDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ +N + M+ + + V + YTF +FK + ++I LE S + +
Sbjct: 108 MGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIV 167
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y C +V+ AR +F
Sbjct: 168 VSSSLVDMYGKCNDVETARRVF 189
>gi|449502762|ref|XP_004161735.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Cucumis sativus]
Length = 690
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH+Q +K G + QT + Y DL+ KVFR V WNTMI G +
Sbjct: 161 IHAQVVKCGFVHDVRV--QTALIGTYSHCLDLESAGKVFRWTIDKDVVTWNTMIFGNLKH 218
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQ 117
D + ++ +L + +T+ + F R I G + S ++ +Q
Sbjct: 219 DKLNEALRLFNQMLGIGLIPTQFTYAMILNICCRNGDYLFGRLIHGRIITSNAIIDRTLQ 278
Query: 118 NALISTYCLCGEVDMARGIF 137
N L+ YC CG++ A IF
Sbjct: 279 NVLLDLYCNCGDIHTAFCIF 298
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 29 LLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87
L +Y + +E KVF K+ Q ++ +N +I YSR H L ++ + + N
Sbjct: 79 LSMYARCGAIWESQKVFEKMPQRNLVSFNALIAAYSRSHGHAPLAFNLLSQMELEFLKPN 138
Query: 88 -YTFPFLFKG--FTRD------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+T L + FT D I + K V V VQ ALI TY C +++ A +F
Sbjct: 139 SFTITSLLQAASFTEDPFWSSLIHAQVVKCGFVHDVRVQTALIGTYSHCLDLESAGKVFR 198
Query: 139 MSCEDD 144
+ + D
Sbjct: 199 WTIDKD 204
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFL 93
GD+ +F + P + WNT+I G S + + + ++ L KS + + D+YT+ +
Sbjct: 289 GDIHTAFCIFNRNENPDLVAWNTIISGCSENEEDEKAMKLFQQLKKSSLTKPDDYTYAAV 348
Query: 94 FKGFTRDIAG-----SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
++G + K VF+ + ++S GE A +F
Sbjct: 349 ISTIDNLLSGMSFIAQVIKDGFEGSVFISSVIVSMLFRNGESQAAARVF 397
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q ++IH+ + GL + L +Y K G + +VF + + S+F WN +I
Sbjct: 4 QGRRIHAHIVASGLASDGFLGDH--LLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAA 61
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF-------------KGFTRDIAGSLEKS 108
+++ + + M+ + + ++ D+ T + K +R +A L S
Sbjct: 62 FAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSS 121
Query: 109 CIVMRVFVQNALISTYCLCGEVDMARGIF 137
IV QNAL+S Y C +D+AR +F
Sbjct: 122 IIV-----QNALVSMYARCSRLDVARVVF 145
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + +Y K G + +VF I +V WN M+ Y++ + + + +Y +++ V+
Sbjct: 225 TAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQ 284
Query: 85 RDNYTFPFLFKGFTRDIAGSLE--KSCIVM-----------RVFVQNALISTYCLCGEVD 131
RD T I+ SL K I + + VQNALIS Y C E+D
Sbjct: 285 RDEVTVVIAL-----GISASLRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELD 339
Query: 132 MARGIF 137
AR +F
Sbjct: 340 AARRVF 345
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIHS +KLG + T + Y K GD++ + F +I++P+ W+ +I G+S
Sbjct: 309 RQIHSHIVKLG--AESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFS 366
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
+ ++ + ++ L V +++ + +F+ G K +V ++
Sbjct: 367 QSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLY 426
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++A+++ Y CG +D AR F
Sbjct: 427 GESAMVTMYSKCGRLDYARRAF 448
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL K+F ++ +V W MI G ++ + + + ++ +++ ++V+ D T +
Sbjct: 338 GDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVL 397
Query: 95 KGFTR----DIAGSL-EKSC---IVMRVFVQNALISTYCLCGEVDMARGIFY-MSCEDDD 145
+ D ++ E C I V+V NALI YC CG VD A +F+ M +D
Sbjct: 398 SACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSV 457
Query: 146 GLHELIRIKAVD---DDLHELFPEYL 168
+I AV+ D++ ELF + L
Sbjct: 458 SWTSMILGLAVNGFVDNVFELFSQML 483
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFTR-- 99
F +I QP++ ++N +I+G S+ ++ ++MY DL+ + DN TF +LFK +R
Sbjct: 112 AFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVK 171
Query: 100 DIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
D+ V++ +F++N+LI Y GE+ A+ +F
Sbjct: 172 DVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVF 215
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS 67
H Q +KLG + + Y G+L Y KVF K+ + WN++I GYS+ +
Sbjct: 180 HVQVLKLGFGSYLFIENSLIRMYGYF-GELGYAQKVFDKMDDRDLVSWNSLICGYSQCNR 238
Query: 68 HKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSCIVMRVFVQNA 119
K + ++ + +++V D+ T + G + +E + + V++ N+
Sbjct: 239 FKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNS 298
Query: 120 LISTYCLCGEVDMARGIF 137
LI Y G VD+AR +F
Sbjct: 299 LIDMYGRRGLVDLARRVF 316
>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Brachypodium distachyon]
Length = 689
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--GDLKYE--CKVFRKITQPSVFLWNT 57
HQ + IH IK GL + P + +Y + G+ E CK F + WN+
Sbjct: 310 HQGRAIHGLVIKNGL--EGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNS 367
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSC 109
M+ GYS+ + + + + + +++R D Y F + + R I GS+ S
Sbjct: 368 MLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSG 427
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
FV ++LI Y G +D A+ F
Sbjct: 428 FASNNFVSSSLIFMYSKSGILDDAKKSF 455
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
Q+ S K GL + + L +Y K G ++ +VF + + + WN +I GY
Sbjct: 111 AQLQSLAFKSGL--ADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYV 168
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF-------TRDIAGSLEKSCIVMRVFV 116
+ +++++ + D TF L F + G + K + + V
Sbjct: 169 ESGKVLQALELFINMETERLVPDEATFAALLTAFDDSNYFLMHQLHGKIVKYGSALGLTV 228
Query: 117 QNALISTYCLCGEVDMARGIF 137
NA I+ Y CG + +R IF
Sbjct: 229 SNAAITAYSQCGALAESRRIF 249
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSV----FLWNTMI 59
+++HS+ +KLG + + R + LY K G+L +VF ++ + V W MI
Sbjct: 157 REVHSRALKLGFSSNRLV--RLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMI 214
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
G+ R + + + + +VR + +T + + R + + K I
Sbjct: 215 DGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 274
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +FV NALI+ Y CG +D A+ +F
Sbjct: 275 LNLFVGNALINMYSRCGSIDEAQTVF 300
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
+ Y ++F+ P+V+L+ +I G+ ++ + +Y +L + DNY + K
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 97 FTRDIA---GSLEKSCIVMRVFVQNALI-----STYCLCGEVDMARGIFYMSCED 143
+A G S + F N L+ Y CGE+ AR +F ED
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 201
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+QIH+Q +K G + + + +Y K G L + K+FR++ + V W MI GY+
Sbjct: 458 EQIHTQVLKTGFQFNVYVS--SVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYT 515
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ D + ++ ++ ++ DN F R I S +
Sbjct: 516 QHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLS 575
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ NAL+S Y CG+V A F
Sbjct: 576 IGNALVSLYARCGKVREAYAAF 597
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 4 LKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++QIH++TI G + C L ++ G L KVF + W MI G
Sbjct: 183 VEQIHAKTITSGFESSTFICNPLID--LYFKNGFLSSAKKVFENLKARDSVSWVAMISGL 240
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALIS 122
S+ + +L++ ++ S + F F + + G + K +V NAL++
Sbjct: 241 SQNGYEEEAMLLFCQIVLSACTKVE------FFEFGKQLHGLVLKQGFSSETYVCNALVT 294
Query: 123 TYCLCGEVDMARGIFY-MSCEDDDGLHELI 151
Y G + A IF+ MS D + LI
Sbjct: 295 LYSRSGNLSSAEQIFHCMSQRDRVSYNSLI 324
>gi|22328675|ref|NP_193307.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161477|sp|Q8VYH0.1|PP313_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g15720
gi|18175616|gb|AAL59897.1| unknown protein [Arabidopsis thaliana]
gi|20465541|gb|AAM20253.1| unknown protein [Arabidopsis thaliana]
gi|332658240|gb|AEE83640.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 616
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 7 IHSQTIKLGLLTKPHCPKQ--TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H+ T+KLG + Y+ L E + K+F ++ +P+V W ++I GY+
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTAR---KLFDEMCEPNVVSWTSVISGYND 107
Query: 65 IDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ +N + M+ + + V + YTF +FK + ++I LE S + +
Sbjct: 108 MGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIV 167
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y C +V+ AR +F
Sbjct: 168 VSSSLVDMYGKCNDVETARRVF 189
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
K +HS + G + T + +Y K +C+ VF K+ + WNTMI G +
Sbjct: 365 KTVHSHILNAG--HESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + +Y + + + + T+ L + R+I + K + +
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482
Query: 116 VQNALISTYCLCGEVDMARGIF 137
VQNALIS Y CG + AR +F
Sbjct: 483 VQNALISMYARCGSIKDARLLF 504
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++IH Q I+ GL T H T + G +K +VF ++TQ + +N MI GY+
Sbjct: 567 RRIHQQVIEAGLATDAHVA-NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAA 625
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ------- 117
+ K + ++ L + ++ D T+ + +GSLE + + + ++
Sbjct: 626 HNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN--SGSLEWAKEIHSLVLKDGYLSDT 683
Query: 118 ---NALISTYCLCGEVDMARGIF 137
NAL+STY CG A +F
Sbjct: 684 SLGNALVSTYAKCGSFSDALLVF 706
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H ++IHS+ +K G + Q + +Y + G +K +F K+ + + W MI
Sbjct: 462 LHWGREIHSRVVKDGFMFD--ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMI 519
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
G ++ + ++ D+ ++ ++ + T+ + + R I + ++ +
Sbjct: 520 GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V N L++ Y +CG V AR +F
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVF 605
>gi|222640155|gb|EEE68287.1| hypothetical protein OsJ_26530 [Oryza sativa Japonica Group]
Length = 483
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 5 KQIHSQTIKL-GLLTKPHCPKQ----TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTM 58
+Q+ +Q +L GLL K C + + LY + L+ VF+ + + W M
Sbjct: 84 RQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAM 143
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR--- 113
I G++ + + + ++ + S + ++ TF LF T +L KS + MR
Sbjct: 144 ISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVHALQMRMGF 203
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF-YMSCED 143
V V NAL+S Y CG +D A+ IF +++C+D
Sbjct: 204 HSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKD 237
>gi|225436126|ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ +LKQIH++ I +G+ H + + + Y + +F + FL+N++I
Sbjct: 23 LQKLKQIHARIITVGI--SRHDFIRAKLVASYASCAQMSQASYIFSLTNRRPTFLYNSLI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+GYS + + ++ +L + D YT P + K + R + ++ + +
Sbjct: 81 RGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCSGLSALRLGRQVHCAVVANGLA 140
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ NALIS Y CG++ AR +F
Sbjct: 141 SDLATINALISMYSKCGDLAAARKVF 166
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
D+ Y K K++ P + WN +I+G+S + + + +Y+ +L+ + D+ T+PFL K
Sbjct: 803 DVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMK 862
Query: 96 GFT----RDIAGSLE----KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + GSL KS + +F+ N LI Y + AR +F
Sbjct: 863 SSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLF 912
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH I+ + + Q + +Y K G + C VF +I S+ WN+M+ G+S
Sbjct: 983 KQIHGHVIRTDVSDEF---VQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFS 1039
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---------CIVMRV 114
+ + + ++ + S + + TF + + + GSLEK C + +
Sbjct: 1040 QNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSS--IGSLEKGRWVHHKLIVCGIKDL 1097
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
F ALI Y CG+++ A +F
Sbjct: 1098 FTDTALIDMYAKCGDLNTAETVF 1120
>gi|297608225|ref|NP_001061322.2| Os08g0238100 [Oryza sativa Japonica Group]
gi|255678268|dbj|BAF23236.2| Os08g0238100 [Oryza sativa Japonica Group]
Length = 647
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 5 KQIHSQTIKL-GLLTKPHCPKQ----TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTM 58
+Q+ +Q +L GLL K C + + LY + L+ VF+ + + W M
Sbjct: 271 RQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAM 330
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR--- 113
I G++ + + + ++ + S + ++ TF LF T +L KS + MR
Sbjct: 331 ISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVHALQMRMGF 390
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF-YMSCED 143
V V NAL+S Y CG +D A+ IF +++C+D
Sbjct: 391 HSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKD 424
>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 32 YEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
Y G L+ KVF + + + WNT+I G ++ H++ ++M ++ +D+R D++T
Sbjct: 184 YYLGSLR---KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240
Query: 92 FLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCED 143
+ F ++I G ++ VF+ ++LI Y C VD + +FYM +
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 300
Query: 144 DDGLHELIRIKAVDDDLHELFPEYLVQML 172
D I V + + + ++ QML
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQML 329
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDL-KYECKVFRKITQPSVFLWNTMIKG 61
K+IH++ IKLGL P + R LL LY K KY K+ + T+P + W+ +I G
Sbjct: 126 KEIHARVIKLGLSQDP----KIRNLLINLYSKCQFFKYARKMVDESTEPDLVSWSALISG 181
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98
YS+ K + + ++ V+ + +TFP L K T
Sbjct: 182 YSQNGFGKEAISAFYEMHLLGVKCNEFTFPSLLKACT 218
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKV-FRKITQPSVFLWNTMIKGYS 63
+Q+HS +K+ + + + +Y K DL + ++ F + + + +WN I G+S
Sbjct: 360 RQLHSSLLKMDIRSDSFLA--VGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITGHS 417
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVF 115
+ V ++ + K V + T + K I KS +
Sbjct: 418 QNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHICSQIHALSLKSGFQFDNY 477
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+LI TY CG + A IF
Sbjct: 478 VANSLIDTYGKCGRIKDATRIF 499
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYL----LLYEKGDLKYECKVFRKITQPSVFLWNTM 58
L Q H+ I GL + P TR L L DL + +F PS F++NT+
Sbjct: 28 HLHQAHAHLIVSGLASHPF--TVTRLLACAALSPSASDLPHAKTIFLHTHNPSPFMFNTI 85
Query: 59 IKGYSR-IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSC 109
I SR +DS V Y+ +L + DN+TFPFL K + + + K
Sbjct: 86 IMASSRTLDS----VTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFG 141
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ VFV N +I+ Y E+ AR +F
Sbjct: 142 LDRDVFVVNNMIALYSSFRELRSARKVF 169
>gi|40253530|dbj|BAD05478.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 724
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 5 KQIHSQTIKL-GLLTKPHCPKQ----TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTM 58
+Q+ +Q +L GLL K C + + LY + L+ VF+ + + W M
Sbjct: 348 RQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAM 407
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR--- 113
I G++ + + + ++ + S + ++ TF LF T +L KS + MR
Sbjct: 408 ISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVHALQMRMGF 467
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF-YMSCED 143
V V NAL+S Y CG +D A+ IF +++C+D
Sbjct: 468 HSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKD 501
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFL 93
G++ + F +++ +V WN M+ Y + + ++G+ MY +L + VR D T+ L
Sbjct: 471 GNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 530
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FKG I G K +++ V NA+I+ Y CG + AR +F
Sbjct: 531 FKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVF 582
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
QI +T+K+GL+ + +Y K G + KVF + + WN MI GYS+
Sbjct: 545 QIIGRTVKVGLIIDTSVANAV--ITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 602
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
K + ++ D+LK + D ++ + G
Sbjct: 603 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSG 634
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLL---LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
L Q H+ I GL +Q +++ L + Y +F ++ PS FL+N ++
Sbjct: 24 HLHQFHAHIIHKGL-------EQDHFIISHFLSISTSVSYSTSIFNRLLNPSTFLYNILL 76
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
K +S+ + ++ + +S+ D YT+P L K + + + GS + +
Sbjct: 77 KIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGV 136
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
V+V ++LIS Y C E+ AR +F
Sbjct: 137 SDDVYVGSSLISFYGKCKEILSARKVF 163
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD+ +F + + V W+ +I GYSR + V ++ +++ +V+ D + L
Sbjct: 247 GDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLM 306
Query: 95 KGFTR----DIA----GSLEKSCIVMR-VFVQNALISTYCLCGEVDMARGIF 137
++ D+A L ++ I R V ALI + CG ++ A +F
Sbjct: 307 SACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLF 358
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCI 110
++F++N+MI+GY S +L YLD+L + +NYTFP L K T + S C+
Sbjct: 348 NIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCL 407
Query: 111 VMR----------VFVQNALISTYCLCGEVDMARGIF 137
V FV +ALI Y L ++ AR +F
Sbjct: 408 VHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLF 444
>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
+ +HS TIK G C + L+ +Y K G+L VF KI V W +++ GY
Sbjct: 357 ESVHSLTIKTGF---DACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGY 413
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRV 114
H+ + ++ D+ + V D + +F F R + + KS +
Sbjct: 414 VHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLL 473
Query: 115 FVQNALISTYCLCG 128
+N+LI+ Y CG
Sbjct: 474 SAENSLITMYAKCG 487
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD--LKYECKVFRKITQPSVFLWNTM 58
+H K IH IK+ L + + T + +Y K L+ E F + + W M
Sbjct: 150 LHTGKMIHCYAIKIQL--EANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAM 207
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCI 110
+ GY++ + + ++ + +++TFP + F R + G + S
Sbjct: 208 LTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGF 267
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
V+VQ+AL+ Y CG++ AR I
Sbjct: 268 GPNVYVQSALVDMYAKCGDLASARMIL 294
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H I G P+ Q+ + +Y K GDL + + V WN+MI G
Sbjct: 256 RQVHGCIIWSGF--GPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIA-GSLEKSCIVMRVF----- 115
+ ++++ + D+R D++T+P + K +++ G S + F
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT 373
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V NAL+ Y G + A +F
Sbjct: 374 VSNALVDMYAKQGNLSCALDVF 395
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H IK L K C + L +Y K G L C+VF +IT+ WN+MI S
Sbjct: 381 KELHGSIIKTKLDEK--CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCS 438
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + ++ + R D + + ++I G + K + ++
Sbjct: 439 QNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLY 498
Query: 116 VQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHE---LFPEYLVQM 171
+++LI Y CG ++ +R +F M +++ + +I DL E LF E L
Sbjct: 499 AESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNG 558
Query: 172 LALPD--TFMG 180
+ PD TF+G
Sbjct: 559 IQ-PDHVTFLG 568
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H + GL + P L +Y K L+ K+F + Q + WN +I GY +
Sbjct: 180 QLHGIAVGCGL--ELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQ 237
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFP--------FLFKGFTRDIAGSLEKSCIVMRVFV 116
++ ++ + ++ D+ TF L ++I G + + +V+ VF+
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297
Query: 117 QNALISTYCLCGEVDMAR 134
++ALI Y C +V+MA+
Sbjct: 298 KSALIDIYFKCRDVEMAQ 315
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G LK +F + WN MI+G++ + +L YL +L + V D YTFP++
Sbjct: 6 GSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVV 65
Query: 95 K---GFTRDIAGSLEKSCIVMR-----VFVQNALISTYCLCGEVDMARGIF 137
K G G + + + VFV ++LI Y G + A+ +F
Sbjct: 66 KACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 30 LLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
L E G L +F I Q LWN M+ GY + N + ++L++ S+++ ++ T
Sbjct: 102 LYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVT 161
Query: 90 FPFLFKGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
F + + + G + + V N L++ Y C + AR +F
Sbjct: 162 FACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLF 217
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 36 DLKYECK----VFRKITQPSVF---LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY 88
D+ ++C+ + + Q S F + TMI GY +K + + L++ ++ +
Sbjct: 303 DIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSV 362
Query: 89 TFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMS 140
TF +F F +++ GS+ K+ + + V +A++ Y CG +D+A +F
Sbjct: 363 TFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRI 422
Query: 141 CEDD 144
E D
Sbjct: 423 TEKD 426
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+H K+IH IK L + + ++ + +Y K G+L + +VF ++ + + WN++I
Sbjct: 478 LHYGKEIHGLMIKGPLRSDLY--AESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSII 535
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
Y K + ++ ++L++ ++ D+ TF
Sbjct: 536 SAYGNHGDLKECLALFHEMLRNGIQPDHVTF 566
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
Q+H +K GL C T + + G L C +F + WN +I + +
Sbjct: 393 QLHGLAVKCGLDFNI-CVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQN 451
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQ 117
+ + + +++ +L+S + D+YTF + K + ++ G + KS + + FV
Sbjct: 452 EHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG 511
Query: 118 NALISTYCLCG 128
+A+I YC CG
Sbjct: 512 SAIIDMYCKCG 522
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 41/178 (23%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ +LKQIH+Q + GLL Q + + +L Y ++ + +P++F N+MI
Sbjct: 22 LKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMI 81
Query: 60 KGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFK--------------------GF 97
+ YS+ + Y +L+S+ + DNYTF FL + GF
Sbjct: 82 RAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACEAGPAVHGALIKHGF 141
Query: 98 TRD-------IAGSLEKSCI--VMRVF---------VQNALISTYCLCGEVDMARGIF 137
D I E SC+ RVF Q ++S CG++ AR +F
Sbjct: 142 EYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLF 199
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 17 LTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
+ KP QT + K GD+ + +F + Q WN MI GY++ + + ++
Sbjct: 171 VQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLF 230
Query: 76 LDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVFVQNALISTYCLC 127
+ V+ + + + T A +EK+ I M V + AL+ Y C
Sbjct: 231 KLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKC 290
Query: 128 GEVDMARGIFY 138
G VD A +F+
Sbjct: 291 GNVDRALKVFW 301
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFL 93
G++ + F +++ +V WN M+ Y + + ++G+ MY +L + VR D T+ L
Sbjct: 451 GNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 510
Query: 94 FKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
FKG I G K +++ V NA+I+ Y CG + AR +F
Sbjct: 511 FKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVF 562
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
QI +T+K+GL+ + +Y K G + KVF + + WN MI GYS+
Sbjct: 525 QIIGRTVKVGLIIDTSVANAV--ITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
K + ++ D+LK + D ++ + G
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSG 614
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H IK + P+ + + +Y + G L+ +VF + + +VF W MI GY+
Sbjct: 25 KQVHECIIKSEMEQHPYVA--NKLMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIGGYA 82
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ ++ + +Y + ++ V+ + TF + K T R I + + +
Sbjct: 83 ENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLR 142
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ NALI Y CG +D AR +F
Sbjct: 143 LGNALIHMYARCGSMDDARLVF 164
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
+K++HS ++ GL + T + +Y + G +K VF K+T+ ++ WN+MI G
Sbjct: 226 VKEVHSHALRAGLESDVRV--GTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGL 283
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---------FTRDIAGSLEKSCIVMR 113
++ ++ + + + D T+ + + R + K +
Sbjct: 284 AQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFD 343
Query: 114 VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V V NAL+ Y CG +D AR +FY + D
Sbjct: 344 VRVGNALVHMYAKCGSMDDARRVFYGMVDRD 374
>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 559
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 16/197 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
Q K +H + + + P T+ ++ Y + GD+ KVF + SV W M+ G
Sbjct: 29 QGKSVHGR-VAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSG 87
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMR 113
Y+R + + ++ + S R + +T+ + K
Sbjct: 88 YARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGD 147
Query: 114 VFVQNALISTYCLCGEVDMARGIFY-MSCEDDDGLHELIRI---KAVDDDLHELFPEYLV 169
+FVQ+AL+ + CG V+ AR +F M +D + LIR + D D LF L
Sbjct: 148 MFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLK 207
Query: 170 QMLALPDTF-MGEGLEV 185
+ + +PD + +G L+
Sbjct: 208 EAM-IPDHYTLGSALKA 223
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 31 LYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K DL+ KVF +I +V W +MI G + +G+L++ + + +V YT
Sbjct: 209 MYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYT 268
Query: 90 FPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ + R + GS+ K ++ F+ AL+ Y CGE+D AR +F
Sbjct: 269 IATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVF 324
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+HQ + +H IK GL++ L +Y K G+L + VF +++ + LW TMI
Sbjct: 282 LHQGRWMHGSVIKQGLMSNSFI--SAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMI 339
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY++ + + + ++LD +++ ++ T + + I G K +V
Sbjct: 340 VGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLV 399
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
V NAL+ Y C V A IF
Sbjct: 400 EYNVVGNALVDMYAKCQAVSEADRIF 425
Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
K IH +KLGL+ + + +Y K E ++F +I+ V WN+MI GY+
Sbjct: 387 KSIHGLAVKLGLVE--YNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYA 444
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
+ + ++++ + D + + I G K V ++
Sbjct: 445 ENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIY 504
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V AL++ Y CG++ AR +F
Sbjct: 505 VDTALLNLYNKCGDLLSARRVF 526
>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------ 95
+VF ++ + +V WN+MI G+S+ +++ V +++D+L+ + TFP
Sbjct: 182 RVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIA 241
Query: 96 --GFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G R K + VFV N+LIS Y CG ++ + +F
Sbjct: 242 SIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSLLVF 285
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y VF I +P+ +WN M +G++ + + +Y+ ++ + + +TFPFL K
Sbjct: 25 LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84
Query: 97 FTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ I G + K + ++V +LIS Y G ++ A+ +F S D
Sbjct: 85 CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRD 140
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+G ++ K+F +I V WN MI GY+ ++K + ++ +++K++V+ D T +
Sbjct: 154 RGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATV 213
Query: 94 FKGFTRDIAGSLE-----KSCIVMRVF-----VQNALISTYCLCGEVDMARGIFYMSCED 143
+ +GS+E S I F + NALI Y CGEV+ A CE
Sbjct: 214 VSACAQ--SGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETA-------CEL 264
Query: 144 DDGL 147
+GL
Sbjct: 265 LEGL 268
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+++ C++ ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 251 LYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 310
Query: 90 FPFLFKGFTR----DIA--------GSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
+ DI L+ + ++ +LI Y CG++D A
Sbjct: 311 MLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA 366
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,143,481
Number of Sequences: 23463169
Number of extensions: 155586850
Number of successful extensions: 319717
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 2862
Number of HSP's that attempted gapping in prelim test: 304995
Number of HSP's gapped (non-prelim): 14516
length of query: 230
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 92
effective length of database: 9,121,278,045
effective search space: 839157580140
effective search space used: 839157580140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)