BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042210
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKG 61
Q KQ+HSQ+I G+ P K+ G + Y K+F KI +P V +WN MIKG
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD---IAGSLEKSCIVMR----- 113
+S++D GV +YL++LK V D++TFPFL G RD +A + C V++
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 114 -VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
++VQNAL+ Y LCG +DMARG+F C++D
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++H +K GL + + Q + +Y G + VF + + VF WN MI GY+
Sbjct: 155 KKLHCHVVKFGLGSNLYV--QNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----RDIAGSLEKSCIVMR----VF 115
R+ ++ + + +++ ++ V + T + + +D+ + + + +
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 116 VQNALISTYCLCGEVDMARGIF 137
++NAL++ Y CGE+D+A IF
Sbjct: 273 LENALVNAYAACGEMDIAVRIF 294
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E+G+LK F ++ W MI GY R + ++ ++ + + D +T
Sbjct: 314 ERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVS 373
Query: 93 LFKGFTRDIAGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
+ GSLE K+ I V V NALI Y CG + A+ +F+
Sbjct: 374 VLTACAH--LGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFH 427
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ QLKQ H I+ G + P+ + + L L+Y KVF +I +P+ F WNT+I
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCI 110
+ Y+ + +LD++ +S + YTFPFL K + + G KS +
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VFV N+LI Y CG++D A +F E D
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GDL CKVF I + V WN+MI G+ + S + ++ + DV+ + T +
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
F R + +E++ + + + + NA++ Y CG ++ A+ +F E D+
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS K G+ H + + +Y K GDL+ +VF + + VF+W+ MI G +
Sbjct: 385 RWIHSYIKKHGIRMNFHV--TSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
V M+ + +++V+ + TF +F
Sbjct: 443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKG---- 96
+V + Q + WN +I Y + ++++ +L L+ +++ + T
Sbjct: 319 EVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQV 378
Query: 97 ----FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
R I ++K I M V +ALI Y CG+++ +R +F
Sbjct: 379 GALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK---GDLKYECKVFRKITQPSVFLWNTMI 59
QLKQIH++ + LGL + L++ GD+ + +VF + +P +F WN +I
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITK----LIHASSSFGDITFARQVFDDLPRPQIFPWNAII 91
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIV 111
+GYSR + ++ +LMY ++ + V D++TFP L K + R + + +
Sbjct: 92 RGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFD 151
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFVQN LI+ Y C + AR +F
Sbjct: 152 ADVFVQNGLIALYAKCRRLGSARTVF 177
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+ Q + IH+ +K+GL +P +Y K G + +F K+ P++ LWN MI
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLN--TMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR------ 113
GY++ + + M+ +++ DVR D + + GSLE++ +
Sbjct: 296 SGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ--VGSLEQARSMYEYVGRSD 353
Query: 114 ----VFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
VF+ +ALI + CG V+ AR +F + + D
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +FR I P F +NTMI+GY + S + + Y ++++ DN+T+P L
Sbjct: 79 ENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCL 138
Query: 94 FKGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
K TR I G + K + VFVQN+LI+ Y CGE++++ +F
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVF 190
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH Q KLGL + Q + +Y + G+++ VF K+ + W++M+ +
Sbjct: 152 KQIHGQVFKLGL--EADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARA 209
Query: 64 RIDSHKNGVLMYLDLLKS---DVRRDNYTFPFLFKGFT------RDIAGSLEKSCIVMRV 114
+ +L++ + L T I G L ++ + +
Sbjct: 210 GMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNI 269
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
VQ +L+ Y CG +D A IF
Sbjct: 270 IVQTSLVDMYVKCGCLDKALHIF 292
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG 61
LKQI +Q I GL+ P + + L E L Y K+ + I P++F WN I+G
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRG 127
Query: 62 YSRIDSHKNGVLMYLDLLK---SDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCI 110
+S ++ K L+Y +L+ + R D++T+P LFK I G + K +
Sbjct: 128 FSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRL 187
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ V NA I + CG+++ AR +F
Sbjct: 188 ELVSHVHNASIHMFASCGDMENARKVF 214
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD++ KVF + + WN +I GY +I + + +Y + V+ D+ T L
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 95 KGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++ ++++ + M + + NAL+ + CG++ AR IF
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G L K+F + + V LWN MI G + ++ + ++ ++ S+ + D T
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCL 396
Query: 95 KGFTR--------DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFY 138
++ I +EK + + V + +L+ Y CG + A +F+
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFH 448
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 3 QLKQIHSQTIKLGL-LTKPHCPKQTRYLL--LYEKGDLKYECKVFRKITQP-SVFLWNTM 58
+L+QIH+ +I+ G+ ++ K + L L + Y KVF KI +P +VF+WNT+
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR-- 113
I+GY+ I + + +Y ++ S V D +T+PFL K T D+ +V+R
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 114 ----VFVQNALISTYCLCGEVDMARGIF 137
++VQN+L+ Y CG+V A +F
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVF 179
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IHS I+ G + + Q L LY GD+ KVF K+ + + WN++I G++
Sbjct: 141 ETIHSVVIRSGFGSLIYV--QNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFV------- 116
+ + +Y ++ ++ D +T L + A +L K V + V
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 258
Query: 117 -QNALISTYCLCGEVDMARGIF 137
N L+ Y CG V+ A+ +F
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLF 280
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M +LKQIH+ IK GL++ + D+ Y VF +I + F+WNT+I+
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GYSRIDSHKNGVLMYLDLLKS--DVRRDNYTFPFLFKGF--------TRDIAGSLEKSCI 110
G+SR + + +++D+L S V+ T+P +FK + R + G + K +
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
F++N ++ Y CG + A IF
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIF 184
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRID 66
I + I LG++ + + + G + +F ++ Q + WN+MI G+ R
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237
Query: 67 SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQN 118
K+ + M+ ++ + DV+ D +T L R I + ++ + V
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVT 297
Query: 119 ALISTYCLCGEVDMARGIF 137
ALI YC CG ++ +F
Sbjct: 298 ALIDMYCKCGCIEEGLNVF 316
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIK 60
+LKQIH++ +K GL+ + K + + D L Y VF +P FLWN MI+
Sbjct: 29 ELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 88
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF--------TRDIAGSLEKSCIVM 112
G+S D + +L+Y +L S + YTFP L K T I + K
Sbjct: 89 GFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN 148
Query: 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
V+ N+LI++Y + G +A +F E DD
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+ G + +FRK+ + + W TMI GY + D +K + ++ ++ SDV DN +
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLAN 252
Query: 93 LFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I L K+ I M + LI Y CGE++ A +F
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+++ +VF+ I + SV W +I GY+ + + ++++ K ++ + T
Sbjct: 291 MYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT 350
Query: 90 F 90
F
Sbjct: 351 F 351
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
E +L Y VF I PSV++WN+MI+GYS + ++ Y ++L+ D +TFP+
Sbjct: 53 ETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPY 112
Query: 93 LFKGFT--RDIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + RDI G + K+ + ++V L+ Y CGEV+ +F
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVF 165
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + +Y K GDL+ +F + + ++ WN++I GYS+ + + M+LD+L +
Sbjct: 255 TSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA 314
Query: 85 RDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D TF + + + I + K+ V + AL++ Y G+ + A+
Sbjct: 315 PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKA 374
Query: 137 F 137
F
Sbjct: 375 F 375
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS-----------HKNGV----LMYLDLL 79
G++ Y +VF I Q +V W ++I G+ + NGV + +DLL
Sbjct: 156 GEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLL 215
Query: 80 KSDVRRDNYTFPFLFKGFTRDIA-GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R + F GF + + +S + V + +LI Y CG++ AR +F
Sbjct: 216 VACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLF 274
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK--------GDLKYECKVFRKITQPSV 52
M QLKQ+H+ T++ P++ L LY K D+ Y +VF I S
Sbjct: 61 MSQLKQLHAFTLRTTY------PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 114
Query: 53 FLWNTMIKGYSRIDSHKNGVLM-YLDLL-KSDVRRDNYTFPFLFK------GFT--RDIA 102
F+WNT+I+ + S K M Y +L + + D +TFPF+ K GF+ + +
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 174
Query: 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K V+V N LI Y CG +D+AR +F
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQ+H Q +K G + + LY G L KVF ++ + S+ WN+MI
Sbjct: 171 KQVHCQIVKHGFGGDVYV--NNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 228
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSC---I 110
R + + + ++ ++ +S D YT + GSL + C +
Sbjct: 229 RFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAG--LGSLSLGTWAHAFLLRKCDVDV 285
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
M V V+N+LI YC CG + MA +F
Sbjct: 286 AMDVLVKNSLIEMYCKCGSLRMAEQVF 312
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTK-PHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
M +L +IH+ I LGL + P + + L GD+ Y K K++ P + WN +I
Sbjct: 21 MSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVI 80
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT----RDIAGSLE----KSCIV 111
+G+S + + + +Y+ +L+ + D+ T+PFL K + R + GSL KS +
Sbjct: 81 RGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLE 140
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+F+ N LI Y + AR +F
Sbjct: 141 WDLFICNTLIHMYGSFRDQASARKLF 166
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFP 91
+ GD+ VF ++++ V W++MI GY + + + ++ +++ + N T
Sbjct: 186 KSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMV 245
Query: 92 FLFKGFTRDIAGSLEKSCIVMR----------VFVQNALISTYCLCGEVDMARGIFY-MS 140
+ G+L + V R V +Q +LI Y CG + A +FY S
Sbjct: 246 SVICACAH--LGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRAS 303
Query: 141 CEDDDGL 147
++ D L
Sbjct: 304 VKETDAL 310
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLKQIH++ IK L +Q + G+ +Y VF ++ PS F WN MI+
Sbjct: 35 QLKQIHTKIIKHNLTNDQLLVRQL-ISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSL 93
Query: 63 SRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKG--------FTRDIAGSLEKSCIVMR 113
S + +L+++ ++ S + D +TFPF+ K + G K+
Sbjct: 94 SVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFND 153
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
VF QN L+ Y CG+ D R +F
Sbjct: 154 VFFQNTLMDLYFKCGKPDSGRKVF 177
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102
VF ++ +V W MI Y + ++ + DV+ + +T L + T+
Sbjct: 207 VFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQ--L 264
Query: 103 GSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
GSL K+ V+ F+ ALI Y CG + AR +F
Sbjct: 265 GSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVF 309
>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730
OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
Length = 565
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QL IH +I G + L L ++GD+K+ K+F +I++ V W MI +
Sbjct: 31 QLLLIHGNSITNGFCSNLQLKDMLIDLYL-KQGDVKHARKLFDRISKRDVVSWTAMISRF 89
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-----GFTRD---IAGSLEKSCIVMRV 114
SR H + +L++ ++ + DV+ + +T+ + K G ++ I GS+EK +
Sbjct: 90 SRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNL 149
Query: 115 FVQNALISTYCLCGEVDMAR 134
V++AL+S Y CG+++ AR
Sbjct: 150 IVRSALLSLYARCGKMEEAR 169
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYSRI 65
+H++ IKLGL + + + + +Y K + ++ KVF + + + WN MI+GY+
Sbjct: 349 VHAEAIKLGLASNIYVG--SSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHN 406
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI-AGSLEKSCIVMR-----VFVQ 117
+ +++D+ S D++TF L + D+ GS S I+ + +FV
Sbjct: 407 GESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVG 466
Query: 118 NALISTYCLCGEVDMARGIFYMSCEDDD 145
NAL+ Y CG ++ AR IF C+ D+
Sbjct: 467 NALVDMYAKCGALEDARQIFERMCDRDN 494
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
G LK +F +++ P V WN MI G+ + + + ++ KS V+ T +
Sbjct: 275 GKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVL 334
Query: 95 KGFTRDIAGSLEKSCIV----------MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
I +L+ +V ++V ++L+S Y C +++ A +F E +
Sbjct: 335 SAI--GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKN 392
Query: 145 DGL-HELIRIKAVDDDLHELFPEYL 168
D + +IR A + + H++ ++
Sbjct: 393 DVFWNAMIRGYAHNGESHKVMELFM 417
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS+++ LG+ ++ + LY K + Y K F + V WN+M+ YS
Sbjct: 80 KAVHSKSLILGIDSEGRLGNAI--VDLYAKCAQVSYAEKQF-DFLEKDVTAWNSMLSMYS 136
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
I + ++ L ++ + + +TF + F R I S+ K + +
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 116 VQNALISTYCLCGEVDMARGIF 137
AL+ Y C + AR +F
Sbjct: 197 CGGALVDMYAKCDRISDARRVF 218
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
++Q KQ+H ++K GL H + + +Y K G +K KVF + + SV N +I
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLH--TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALI 602
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
GYS+ ++ + V+++ ++L V TF
Sbjct: 603 AGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFA 633
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECK-VFRKITQPSVFLWNTMIKGYS 63
+QIH IK+GL +C + +Y K D + + VF I P+ W + GY
Sbjct: 180 RQIHCSMIKMGLERNSYCGGA--LVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYV 237
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99
+ + VL++ + R D+ F + + R
Sbjct: 238 KAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIR 273
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQP-SVFLWNTMIKGYSR 64
Q H Q K G ++ + + + C +F +++ P S+ LW M+ G+S+
Sbjct: 650 QFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQ 709
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-EKSCIVMRVF-------- 115
++ + Y ++ V D TF + + + SL E I +F
Sbjct: 710 NGFYEEALKFYKEMRHDGVLPDQATFVTVLR--VCSVLSSLREGRAIHSLIFHLAHDLDE 767
Query: 116 -VQNALISTYCLCGEVDMARGIF 137
N LI Y CG++ + +F
Sbjct: 768 LTSNTLIDMYAKCGDMKGSSQVF 790
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 31 LYEK-GDLKYECKVFRKITQPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY 88
+Y K GD+K +VF ++ + S V WN++I GY++ ++ + ++ + +S + D
Sbjct: 776 MYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEI 835
Query: 89 TF 90
TF
Sbjct: 836 TF 837
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 3 QLKQIHSQTIKLGL---------LTKPHCPKQTRYLLLYEKGDLKYECKVFRKI-TQPSV 52
+LK H K GL L C TR L + K +VF + +
Sbjct: 47 ELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAK-------EVFENSESYGTC 99
Query: 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGS 104
F++N++I+GY+ +L++L ++ S + D YTFPF KG I G
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 105 LEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K +FVQN+L+ Y CGE+D AR +F
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
QIH +K+G K + + E G+L KVF ++++ +V W +MI GY+R
Sbjct: 155 QIHGLIVKMGY-AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 66 DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRVFV 116
D K+ V ++ +++ +V ++ T + + + + S I + +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 117 QNALISTYCLCGEVDMARGIF 137
+AL+ Y C +D+A+ +F
Sbjct: 274 VSALVDMYMKCNAIDVAKRLF 294
>sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790
OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1
Length = 460
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
+ LKQIH+Q I +GL H ++ L L L Y + R+I PSVFL+NT+I
Sbjct: 22 LQNLKQIHAQIITIGL--SHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLI- 78
Query: 61 GYSRIDSHKNGVLMYLDLLKSD---------VRRDNYTFPFLFKGFTRDIAGSLEKSCIV 111
S I S+ N +L D VR + +T+P LFK D +
Sbjct: 79 --SSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALH 136
Query: 112 MRV-----------FVQNALISTYCLCGEVDMARGIF 137
V FVQ AL+ Y CG++ AR +F
Sbjct: 137 AHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLF 173
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T + LY K G L + KVF +++Q V +N MI+G + + G+ +Y L+ +
Sbjct: 255 TSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLV 314
Query: 85 RDNYTF 90
D+ TF
Sbjct: 315 PDSATF 320
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTM 58
+ L+ IH+Q IK+GL + K + +L + L Y VF+ I +P++ +WNTM
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAGSLEKSCI 110
+G++ + + +Y+ ++ + ++YTFPF+ K + I G + K
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 111 VMRVFVQNALISTYCLCGEVDMARGIF 137
+ ++V +LIS Y G ++ A +F
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVF 192
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPF 92
+G ++ K+F +I V WN MI GY+ ++K + ++ D++K++VR D T
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 93 LFKGFTRDIAGSLEKSCIV----------MRVFVQNALISTYCLCGEVDMARGIF 137
+ + +GS+E V + + NALI Y CGE++ A G+F
Sbjct: 272 VVSACAQ--SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
LY K G+L+ C +F ++ V WNT+I GY+ ++ +K +L++ ++L+S ++ T
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 90 FPFLFKG--------FTRDIAGSLEKSC--IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ R I ++K + ++ +LI Y CG+++ A +F
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVF 427
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 25 QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83
+T + +Y K GD++ +VF I S+ WN MI G++ ++ + K +
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 466
Query: 84 RRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQN 118
+ D+ TF L + +G L+ + R Q+
Sbjct: 467 QPDDITFVGLLSACSH--SGMLDLGRHIFRTMTQD 499
>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2
SV=1
Length = 572
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
++ +IH +K GL ++ L D++Y +F ++ ++F++NTMI+GY
Sbjct: 43 EVSRIHGYMVKTGLDKDDFAV--SKLLAFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGY 100
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC--IVMR----VF- 115
S D + ++ L + D ++F K +R++ S+ + I +R VF
Sbjct: 101 SISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFT 160
Query: 116 -VQNALISTYCLCGEVDMARGIF 137
++NALI YC+CG++ AR +F
Sbjct: 161 DLRNALIHFYCVCGKISDARKVF 183
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
++Q+KQ+H+Q I+ L H PK L L + +L +VF ++ +P+V L N++I
Sbjct: 32 LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLA--VRVFNQVQEPNVHLCNSLI 89
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
+ +++ ++ ++ + + DN+T+PFL K + + +EK +
Sbjct: 90 RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLS 149
Query: 112 MRVFVQNALISTYCLCG 128
++V NALI Y CG
Sbjct: 150 SDIYVPNALIDCYSRCG 166
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 31 LYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
L + G+L+ ++F ++ Q + WNTM+ GY+R +L + R+ ++
Sbjct: 195 LVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKA----FELFEKMPERNTVSW 250
Query: 91 PFLFKGFTRDIAGSLEKSCIV---MRVFVQNALISTYCLCG 128
+ G+++ AG +E + ++ M + +N + T + G
Sbjct: 251 STMVMGYSK--AGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 33 EKGDLKYECKVFRKITQPS--VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90
+ GD++ +F K+ P+ V W +I GY+ K + ++ S ++ D
Sbjct: 259 KAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAV 318
Query: 91 PFLFKGFTRD--------IAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ T I L++S + +V NAL+ Y CG + A +F
Sbjct: 319 ISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVF 373
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 31 LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT 89
+Y K G+LK VF I + + WNTM+ G K + ++ + + +R D T
Sbjct: 359 MYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVT 418
Query: 90 F 90
F
Sbjct: 419 F 419
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 12/114 (10%)
Query: 34 KGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93
+ + Y +F +++P + ++N+M +GYSR + +++++L+ + DNYTFP L
Sbjct: 76 ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135
Query: 94 FKGFTRDIAGSLEKS----CIVMR------VFVQNALISTYCLCGEVDMARGIF 137
K +A +LE+ C+ M+ V+V LI+ Y C +VD AR +F
Sbjct: 136 LKACA--VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF 187
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H ++KLGL + CP T + E D+ VF +I +P V +N MI GY+
Sbjct: 149 RQLHCLSMKLGLDDNVYVCP--TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYA 206
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE----------KSCIVMR 113
R + + ++ ++ ++ + T + + GSL+ K
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA--LLGSLDLGKWIHKYAKKHSFCKY 264
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V ALI + CG +D A IF
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIF 288
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ LKQIH+ + GL++ + Y L G LKY K+F +I +P V + N ++
Sbjct: 25 IRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVL 84
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
+G ++ + V +Y ++ K V D YTF F+ K ++ G + + V
Sbjct: 85 RGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFV 144
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
+ +V+NALI + CG++ +A +F
Sbjct: 145 LNEYVKNALILFHANCGDLGIASELF 170
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F + T+ V WN MI GY K + ++ ++ + D T L +
Sbjct: 230 ELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA--V 287
Query: 102 AGSLE---------------KSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
G LE S I + + NALI Y CG +D A +F
Sbjct: 288 LGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVF 338
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 1/130 (0%)
Query: 8 HSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDS 67
H + ++ G + + K L GDL ++F + W++M GY++
Sbjct: 135 HGKVVRHGFVLNEYV-KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGK 193
Query: 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+ ++ ++ D N K D A L V NA+IS Y C
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 128 GEVDMARGIF 137
G A GIF
Sbjct: 254 GYPKEALGIF 263
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 17/233 (7%)
Query: 3 QLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGY 62
QLK+IH+ ++ G K Q L+ GD+ Y +VF ++ +P +FLWNT+ KGY
Sbjct: 26 QLKKIHAIVLRTGFSEKNSLLTQLLENLVV-IGDMCYARQVFDEMHKPRIFLWNTLFKGY 84
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEKSCIVMRV------ 114
R +L+Y + VR D +T+PF+ K ++ D + V++
Sbjct: 85 VRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLG 144
Query: 115 FVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLA 173
V L+ Y GE+ A +F M +D + + + V + EY +M A
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAV-CVQTGNSAIALEYFNKMCA 203
Query: 174 LPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNS 226
D + V+ A ++G+LE G R + D ++ N+
Sbjct: 204 --DAVQFDSFTVVSMLSA----CGQLGSLEIGEEIYDRARKEEIDCNIIVENA 250
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 13 KLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNG 71
+ GL T+P +T+ L +Y K G + KVF + + ++F W+ MI YSR + +
Sbjct: 106 RFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREV 165
Query: 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVF----------VQNALI 121
++ ++K V D++ FP + +G G +E ++ V V N+++
Sbjct: 166 AKLFRLMMKDGVLPDDFLFPKILQGCAN--CGDVEAGKVIHSVVIKLGMSSCLRVSNSIL 223
Query: 122 STYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171
+ Y CGE+D A F E D + + + HE E + +M
Sbjct: 224 AVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEM 273
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTMIKGY 62
K IHS IKLG+ C + + +L +Y K G+L + K FR++ + V WN+++ Y
Sbjct: 201 KVIHSVVIKLGM---SSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAY 257
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIVMRV 114
+ H+ V + ++ K + T+ L G+ + D+ +E I V
Sbjct: 258 CQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADV 317
Query: 115 FVQNALISTYCLCG----EVDMARGIF 137
F A+IS G +DM R +F
Sbjct: 318 FTWTAMISGLIHNGMRYQALDMFRKMF 344
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
++Q ++HS +K+G + + +Y K G L+ KVF + V+ WN+MI
Sbjct: 368 INQGSEVHSIAVKMGFIDDVLVGNS--LVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMI 425
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--------DIAGSLEKSCIV 111
GY + ++ + +++R + T+ + G+ + D+ +EK V
Sbjct: 426 TGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKV 485
Query: 112 MR-VFVQNALISTYCLCGEVDMARGIF 137
R N +I+ Y G+ D A +F
Sbjct: 486 QRNTATWNLIIAGYIQNGKKDEALELF 512
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMI 59
+ L QIH IK G+ T + K + + L Y ++ +P F++NT++
Sbjct: 18 LRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 77
Query: 60 KGYSRIDSHKNGVLMYLDLL-KSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR--- 113
+GYS D N V ++++++ K V D+++F F+ K R + + C ++
Sbjct: 78 RGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGL 137
Query: 114 ---VFVQNALISTYCLCGEVDMARGIF 137
+FV LI Y CG V+ AR +F
Sbjct: 138 ESHLFVGTTLIGMYGGCGCVEFARKVF 164
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 16 LLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY 75
+L + H + G+L+ ++F ++ W+TMI G + S L +
Sbjct: 198 MLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYF 257
Query: 76 LDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLC 127
+L ++ + + + + F + + G +EK+ V V NALI Y C
Sbjct: 258 RELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC 317
Query: 128 GEVDMARGIF 137
G V MAR +F
Sbjct: 318 GNVPMARLVF 327
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYEKGDLKYECKVFRKI-TQPSVFLWNTM 58
M +L++IHS I GL P R+ + G L + +F + PS WN +
Sbjct: 18 MKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYL 77
Query: 59 IKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTR--------DIAGSLEKSC 109
I+G+S S N +L Y +L S V R D +TF F K R +I GS+ +S
Sbjct: 78 IRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSG 137
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V +L+ Y G V++A +F
Sbjct: 138 FLDDAIVATSLVRCYSANGSVEIASKVF 165
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IH I+ G L T + Y G ++ KVF ++ + WN MI +S
Sbjct: 128 EIHGSVIRSGFLDDA--IVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSH 185
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMR----------V 114
+ H + MY + V D+YT L +L ++ R V
Sbjct: 186 VGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAH--VSALNMGVMLHRIACDIRCESCV 243
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
FV NALI Y CG ++ A G+F
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVF 266
>sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3
SV=1
Length = 527
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 42 KVFRKITQ--PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--- 96
+VF ++++ S F WN++I GY+ + +++ + +Y + + V+ D +TFP + K
Sbjct: 148 EVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGG 207
Query: 97 -----FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
I L K V+V NAL+ Y CG++ AR +F M
Sbjct: 208 IGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDM 255
>sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protein At1g22830
OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1
Length = 703
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFL----WNTMI 59
+Q+H+ I GL PK + Y +L E + IT+ S L WN +I
Sbjct: 103 QQLHAHCISSGLEFDSVLVPKLVTF---YSAFNLLDEAQT---ITENSEILHPLPWNVLI 156
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
Y R + V +Y ++ +R D +T+P + K + R + GS+E S
Sbjct: 157 GSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHR 216
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRIKAVDDDLHELF 164
++V NALIS Y G+VD+AR +F MS D + +I ++ L E F
Sbjct: 217 CNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAF 270
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
DL++ VF+++ S+ WN++I G++ + + + ++L S ++ T +
Sbjct: 372 DLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILP 431
Query: 96 GFTR--DIAGSLEKSCIVMR-------VFVQNALISTYCLCGEVDMARGIF 137
F R ++ E C ++R + + N+L+ Y GE+ A+ +F
Sbjct: 432 LFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVF 482
>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420
OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
Length = 794
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
++SQ IKLG + QT L +Y GDL+ ++F + WNTMI G
Sbjct: 219 SSLNSQIIKLGY--SDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSL 276
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ------ 117
+ D ++G++ + ++L S V +T+ + G ++ + SL K I R+ V
Sbjct: 277 KNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGK-LIHARIIVSDSLADL 335
Query: 118 ---NALISTYCLCGEVDMARGIF 137
NAL+ YC CG++ A +F
Sbjct: 336 PLDNALLDMYCSCGDMREAFYVF 358
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
GD++ VF +I P++ WN++I G S + +LMY LL+ S R D YTF
Sbjct: 349 GDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAA 408
Query: 94 FKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ + G + K VFV L+S Y E + A+ +F + E D
Sbjct: 409 ISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERD 467
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
K +H Q KLG + T + ++ + + KVF + + V LW MI G+SR
Sbjct: 422 KLLHGQVTKLGY-ERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSR 480
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS---CIVMR------VF 115
+ + + V ++++ + R D ++ + G D+A + C+ +R +
Sbjct: 481 LGNSELAVQFFIEMYREKNRSDGFSLSSVI-GACSDMAMLRQGEVFHCLAIRTGFDCVMS 539
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V AL+ Y G+ + A IF ++ D
Sbjct: 540 VCGALVDMYGKNGKYETAETIFSLASNPD 568
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL-LYEK-GDLKYECKVFRKITQPSVFLWNTM 58
+ + +QIH+ + G P L+ +Y + G L+ KVF K+ +V +N +
Sbjct: 110 LKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNAL 169
Query: 59 IKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDI--AGSLEKSCIVM- 112
YSR D + + V+ ++ TF L + D+ SL I +
Sbjct: 170 YSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLG 229
Query: 113 ---RVFVQNALISTYCLCGEVDMARGIF 137
V VQ +++ Y CG+++ AR IF
Sbjct: 230 YSDNVVVQTSVLGMYSSCGDLESARRIF 257
>sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protein At4g16470
OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2
Length = 501
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYE-KGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH+Q +G + + + L+LY GDL+ +FR + + WN MI GY
Sbjct: 128 KRIHAQMFVVGFALNEYL--KVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYV 185
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + G+ +Y D+ ++ + D YTF +F+ + + + K CI +
Sbjct: 186 QKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNII 245
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V +AL+ Y C +F
Sbjct: 246 VDSALVDMYFKCSSFSDGHRVF 267
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPH--CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTM 58
++QL+QI +Q + L + KP+ PK E GD Y +F +P+ + +N M
Sbjct: 50 VNQLRQIQAQML-LHSVEKPNFLIPKAV------ELGDFNYSSFLFSVTEEPNHYSFNYM 102
Query: 59 IKGYSRI-DSHKNGVLMYLDLLKSDVRRDNYTFPFLF--------KGFTRDIAGSLEKSC 109
I+G + + H+ + +Y + S ++ D +T+ F+F G R + SL K
Sbjct: 103 IRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVG 162
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V + ++LI Y CG+V AR +F
Sbjct: 163 LERDVHINHSLIMMYAKCGQVGYARKLF 190
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +HS K+GL H +++Y K G + Y K+F +IT+ WN+MI GYS
Sbjct: 152 RSVHSSLFKVGLERDVHINHSL--IMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYS 209
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGS--LEKSCIVMRV----F 115
K+ + ++ + + D T + + D+ LE+ I ++ F
Sbjct: 210 EAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF 269
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ + LIS Y CG++D AR +F
Sbjct: 270 LGSKLISMYGKCGDLDSARRVF 291
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
++ + +Y K GDL +VF ++ + W MI YS+ ++ ++ K+ V
Sbjct: 272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVS 331
Query: 85 RDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGI 136
D T + + I + + ++V L+ Y CG V+ A +
Sbjct: 332 PDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 391
Query: 137 F 137
F
Sbjct: 392 F 392
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH Q +K+ T L +Y K G++K KVF IT +V W +MI GY
Sbjct: 162 KKIHCQLVKVPSFDNV---VLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYV 218
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA--------GSLEKSCIVMRVF 115
+ D + G++++ + +++V + YT+ L T+ A G L KS I +
Sbjct: 219 KNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSC 278
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ +L+ Y CG++ AR +F
Sbjct: 279 LVTSLLDMYVKCGDISNARRVF 300
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 5 KQIHSQTIKLGLL-TKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ +H +IK+G+ T Y Y+ D KY VF ++ + WN++I G+S
Sbjct: 363 RSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKY---VFEMESEKDIVAWNSIISGFS 419
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVM------R 113
+ S + ++ + V + T LF + SL + +
Sbjct: 420 QNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSS 479
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
V V AL+ Y CG+ AR IF
Sbjct: 480 VHVGTALLDFYAKCGDPQSARLIF 503
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RD 100
VF +I +P +LW M++ Y V +Y L+K R D+ F K T +D
Sbjct: 98 VFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQD 157
Query: 101 IAGSLEKSCIVMRV-----FVQNALISTYCLCGEVDMARGIF 137
+ + C +++V V L+ Y CGE+ A +F
Sbjct: 158 LDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVF 199
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+HQ K H +K G+ + T L +Y K GD+ +VF + + + +W MI
Sbjct: 258 LHQGKWFHGCLVKSGI--ELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 315
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIV 111
GY+ S + ++ + +++ + T + G R + G L +
Sbjct: 316 VGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHG-LSIKVGI 374
Query: 112 MRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144
V NAL+ Y C + A+ +F M E D
Sbjct: 375 WDTNVANALVHMYAKCYQNRDAKYVFEMESEKD 407
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+H+ ++KLG L T L Y K GD + +F I + + W+ MI GY +
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGK 523
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTF 90
+ ++ ++LK + + TF
Sbjct: 524 QGDTIGSLELFEEMLKKQQKPNESTF 549
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLY-----EKGDLKYECKVFRKITQPSVFLW 55
+ +++Q H+ +K GL H L+ + E + Y + +I P+ F
Sbjct: 52 LTEIQQAHAFMLKTGLF---HDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTH 108
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK------GFT--RDIAGSLEK 107
N++I+ Y+ + + + ++ ++L V D Y+F F+ K GF R I G K
Sbjct: 109 NSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIK 168
Query: 108 SCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIRI---KAVDDDLHEL 163
S +V VFV+N L++ Y G ++AR + M D + L+ K + D+ L
Sbjct: 169 SGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARAL 228
Query: 164 FPE 166
F E
Sbjct: 229 FDE 231
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 32 YEKGDLKYECK-VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYT 89
Y L E K VF + V WN M+ Y+ + + + ++ +L + D +T
Sbjct: 247 YAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFT 306
Query: 90 FPFLFKGFTRDIAGSL----------EKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139
+ GSL +K I + F+ AL+ Y CG++D A +F
Sbjct: 307 LVSVLSACAS--LGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRA 364
Query: 140 SCEDD----DGLHELIRIKAVDDDLHELFPEYLVQMLALPD--TFMG 180
+ + D + + + + + D E+F E + + P+ TF+G
Sbjct: 365 TSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFK-PNGITFIG 410
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH++ +K G + +T+ ++ Y K D L+ +F K+ +VF W +I
Sbjct: 90 KQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG--------FTRDIAGSLEKSCIVMRVF 115
RI + ++ ++++L++++ DN+ P + K F R + G + KS + VF
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L Y CG +D A +F
Sbjct: 210 VASSLADMYGKCGVLDDASKVF 231
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 26 TRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84
T L Y K G ++Y VF ++ + V WN +I GY + ++ + M + ++
Sbjct: 313 TSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLK 372
Query: 85 RDNYTFPFLFKGFTR--DIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGI 136
D T L R ++ E C +R + + + ++ Y CG + A+ +
Sbjct: 373 YDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKV 432
Query: 137 FYMSCEDD 144
F + E D
Sbjct: 433 FDSTVEKD 440
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC---KVFRKITQPSVFLWNT 57
+ L+ +HS+ I L C L+ LK KVF +I + +V + N
Sbjct: 55 IRTLRTVHSRII----LEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINV 110
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSC 109
MI+ Y + GV ++ + +VR D+YTFP + K + R I GS K
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVG 170
Query: 110 IVMRVFVQNALISTYCLCGEVDMAR 134
+ +FV N L+S Y CG + AR
Sbjct: 171 LSSTLFVGNGLVSMYGKCGFLSEAR 195
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95
++ Y +F K+ + S+ WN MI Y + V +Y + D + +
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317
Query: 96 G--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ I G +E+ ++ + ++NALI Y CG ++ AR +F
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVF 367
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 36 DLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLF 94
D+ Y ++F +++ P+VFL+N++I+ Y+ + + + +Y LL+ D +TFPF+F
Sbjct: 57 DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116
Query: 95 KG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD-- 144
K + + G L K V +NALI Y ++ A +F E D
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176
Query: 145 ------DGLHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEV 185
G L ++K H + + +V A+ + G G V
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 37 LKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96
L Y +F +I P++F++N +I+ +S Y +LKS + DN TFPFL K
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 97 FTR---DIAGSLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIF 137
+ + G S IV V+V+N+L+ Y CG + A IF
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIF 175
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101
++F ++ ++F W+ MI GY++ + + + ++ + + V + +
Sbjct: 204 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAH-- 261
Query: 102 AGSLE----------KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD-GLHEL 150
G+LE KS + + + + AL+ + CG+++ A +F E D +
Sbjct: 262 LGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSI 321
Query: 151 IRIKAVDDDLHELFPEYLVQMLAL 174
I+ AV H+ Y QM++L
Sbjct: 322 IKGLAVHGHAHKAM-HYFSQMISL 344
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT-RYLLLYE--KGDLKYECKVFRKITQPSVFLWNT 57
+ L QIH+ IK G + + R+ + DL Y K+F ++ Q + F WNT
Sbjct: 36 IRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 95
Query: 58 MIKGYSRIDSHKN--GVLMYLDLLKSD-VRRDNYTFPFLFKGFT--------RDIAGSLE 106
+I+G+S D K + ++ +++ + V + +TFP + K + I G
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLAL 155
Query: 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145
K FV + L+ Y +CG + AR +FY + + D
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94
GD K +F K+ Q SV WNTMI GYS K+ V ++ ++ K D+R + T +
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVL 281
Query: 95 KGFTRDIAGSL----------EKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+R GSL E S I + + +ALI Y CG ++ A +F
Sbjct: 282 PAISR--LGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+++H+ IK L P +TR L+ Y K D L+ KV ++ + +V W MI YS
Sbjct: 72 QRVHAHMIKTRYL--PATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVF 115
+ + ++ ++++SD + + +TF + G + I G + K +F
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V ++L+ Y G++ AR IF
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIF 211
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
KQIH +K H + L +Y K G +K ++F + + V +I GY+
Sbjct: 173 KQIHGLIVKWNY--DSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYA 230
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--RDIAGSLEKSCIVMR------VF 115
++ + + M+ L + + T+ L + + + C V+R
Sbjct: 231 QLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAV 290
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+QN+LI Y CG + AR +F
Sbjct: 291 LQNSLIDMYSKCGNLSYARRLF 312
>sp|Q9C7V5|PP104_ARATH Putative pentatricopeptide repeat-containing protein At1g64310
OS=Arabidopsis thaliana GN=PCMP-E65 PE=3 SV=1
Length = 552
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQ-TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+++HS K L P+ Q R+ L + DL K+F + SVFLWN++I+ Y+
Sbjct: 25 QKLHSFVTKSKLARDPYFATQLARFYALND--DLISARKLFDVFPERSVFLWNSIIRAYA 82
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD 100
+ + ++ +L+SD R DN+T+ L +GF+
Sbjct: 83 KAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSES 119
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 41 CKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG---F 97
C VF I++P + +++I GYSR +HK + ++ +L S + D +
Sbjct: 262 CSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSCAEL 321
Query: 98 TRDIAGSLEKSCIV-----MRVFVQNALISTYCLCGEVDMARGIF 137
+ ++G S ++ + + V +ALI Y CG + A +F
Sbjct: 322 SDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLF 366
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
L+ IH I GL C + Y K L E K+F I P + LWN MI GY
Sbjct: 125 LRCIHGIAIVSGLGFDQICGSAI--VKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGY 182
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRD----IAGSLEKSCIVMRV--- 114
G+ ++ +L++ + N YT L G +A S+ C+ + +
Sbjct: 183 GCCGFWDKGINLF-NLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSH 241
Query: 115 -FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+V AL++ Y C + A +F E D
Sbjct: 242 SYVGCALVNMYSRCMCIASACSVFNSISEPD 272
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAGSLEK 107
P FLWN +++ Y R +S + + +YL +++S V D Y+ P + K + D E
Sbjct: 80 PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKEL 139
Query: 108 SCIVMRV------FVQNALISTYCLCGEVDMARGIF 137
+ +R+ F ++ I+ YC GE + AR +F
Sbjct: 140 HSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVF 175
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K++HS ++LG + C ++ ++ LY K G+ + KVF + + + WN +I G +
Sbjct: 137 KELHSVAVRLGFVGDEFC--ESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLN 194
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTRDIAGSLE-KSCIVMR------- 113
V M++D+ +S + D++T + G D++ + + C++
Sbjct: 195 HAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSD 254
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ + N+LI Y CG +D+A IF
Sbjct: 255 IMMLNSLIDMYGKCGRMDLASHIF 278
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
L Q+H I GL KPH Y L +++ DL +F + P V LWN+MI+GY+
Sbjct: 21 LLQVHGSLIVSGL--KPHNQLINAYSL-FQRQDLSR--VIFDSVRDPGVVLWNSMIRGYT 75
Query: 64 RIDSHKN--GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE------------KSC 109
R H+ G Y+ K + D Y+F F K AGS++ +
Sbjct: 76 RAGLHREALGFFGYMSEEKG-IDPDKYSFTFALKA----CAGSMDFKKGLRIHDLIAEMG 130
Query: 110 IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ V++ AL+ YC ++ AR +F
Sbjct: 131 LESDVYIGTALVEMYCKARDLVSARQVF 158
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSRI 65
IH ++ GL+ T + +Y K G+L+ ++F I V W+ MI Y +
Sbjct: 322 IHDYAVQQGLIGDVSVA--TSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQA 379
Query: 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMRVFVQN----- 118
H + ++ D+++ ++ + T + +G A L KS C ++ +++
Sbjct: 380 GQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETA 439
Query: 119 -ALISTYCLCGEVDMARGIF 137
A+IS Y CG A F
Sbjct: 440 TAVISMYAKCGRFSPALKAF 459
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+IH ++GL + + T + +Y K DL +VF K+ V WNTM+ G ++
Sbjct: 121 RIHDLIAEMGLESDVYIG--TALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQ 178
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--C------IVMRVFV 116
+L++ D+ V D+ + L ++ LEKS C ++ + F+
Sbjct: 179 NGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSK-----LEKSDVCRCLHGLVIKKGFI 233
Query: 117 ---QNALISTYCLCGEVDMARGIF 137
+ LI YC C ++ A +F
Sbjct: 234 FAFSSGLIDMYCNCADLYAAESVF 257
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
+HS I+ G ++ P + +Y K G ++ K F +I+ + WNTM+ Y+
Sbjct: 625 SVHSSLIQCGFCSQT--PVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAA 682
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTF 90
V ++L + +++++ D+ +F
Sbjct: 683 HGLASCAVSLFLSMQENELKPDSVSF 708
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLL--LYEKGDLKYECKVFRKI--TQPSVFLWN 56
+ Q+K IH + + G+LT T +L+ G L + + R+ + V+ WN
Sbjct: 41 ISQVKLIHQKLLSFGILTL----NLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWN 96
Query: 57 TMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIAGSLEKSC------ 109
++I+ Y + N L L+ S DNYTFPF+FK + +S
Sbjct: 97 SLIRSYGD-NGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 110 --IVMRVFVQNALISTYCLCGEVDMARGIF 137
+ VFV NAL++ Y C + AR +F
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVF 185
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRD 100
KVF +++ V WN++I+ Y+++ K + M+ + R DN T +
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASL 242
Query: 101 IAGSLEK--------SCIVMRVFVQNALISTYCLCGEVDMARGIFY-MSCED 143
SL K S ++ +FV N L+ Y CG +D A +F MS +D
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKD 294
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99
VF ++ V WN M+ GYS+I ++ V ++ + + ++ D T+ G+ +
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
KQIH +K G+ L+ H QT L +Y + L + KVF +I QP V W+ ++ GY
Sbjct: 136 KQIHCWVVKNGVFLSDSHV--QTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGY 193
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-----------EKSCIV 111
R G+ ++ ++L + D ++ + G+L +KS I
Sbjct: 194 VRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQ--VGALAQGKWIHEFVKKKSWIE 251
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y CG ++ A +F
Sbjct: 252 SDVFVGTALVDMYAKCGCIETAVEVF 277
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 5 KQIHSQTIKLGL-LTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGY 62
KQIH +K G+ L+ H QT L +Y + L ++ KVF +I QP V W+ ++ GY
Sbjct: 136 KQIHCWVVKNGVFLSDGHV--QTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGY 193
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSL-----------EKSCIV 111
R G+ ++ ++L + D ++ + G+L +K I
Sbjct: 194 VRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQ--VGALAQGKWIHEFVKKKRWIE 251
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
VFV AL+ Y CG ++ A +F
Sbjct: 252 SDVFVGTALVDMYAKCGCIETAVEVF 277
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFL 93
G+L VF K+++ ++F WN ++ GY++ + +Y +L V+ D YTFP +
Sbjct: 143 GNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCV 202
Query: 94 FK--GFTRDIAGSLEKSCIVMR------VFVQNALISTYCLCGEVDMARGIF 137
+ G D+A E V+R + V NALI+ Y CG+V AR +F
Sbjct: 203 LRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 5 KQIHSQTIKLGLLTKPH-CPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH+ I G C T+ L G + K+F ++ + + W TMI GY
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYL--NAGSWREAEKLFSRMERKDIVSWTTMISGYE 374
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAGSLEKSCIVMR----VF 115
+ Y + + V+ D T + D L K I R V
Sbjct: 375 YNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVI 434
Query: 116 VQNALISTYCLCGEVDMARGIFY 138
V N LI+ Y C +D A IF+
Sbjct: 435 VANNLINMYSKCKCIDKALDIFH 457
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLY-EKGDLKYECKVFRKITQPSVFLWNTMIKGYS 63
+ IH ++ G L PH +T + +Y E G LK +F ++ + +V WN++I Y
Sbjct: 350 RTIHGYAMRRGFL--PHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYV 407
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVF 115
+ + + + ++ +L S + D+ T + + R+I + KS
Sbjct: 408 QNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTI 467
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ N+L+ Y +CG+++ AR F
Sbjct: 468 ILNSLVHMYAMCGDLEDARKCF 489
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 23 PKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81
P TR L + L + ++F ++ + FLWN MIKG++ + V Y ++ +
Sbjct: 65 PALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFA 124
Query: 82 DVRRDNYTFPFLFKGFT--------RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133
V+ D +T+PF+ K + I + K V V+V N+LIS Y G A
Sbjct: 125 GVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDA 184
Query: 134 RGIF 137
+F
Sbjct: 185 EKVF 188
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKITQPSVFLWNTMIKGYS 63
K+IH+ IKLG ++ + + LY K ++ KVF ++ + + WN+MI GY
Sbjct: 150 KKIHAMVIKLGFVSDVYVCNSL--ISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYL 207
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR-------V 114
+ + ++++ ++LK + D ++ + + + K C +R V
Sbjct: 208 ALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDV 267
Query: 115 FVQNALISTYCLCGEVDMARGIF 137
V +++ Y GEV A IF
Sbjct: 268 MVMTSILDMYSKYGEVSYAERIF 290
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K+IH ++ + T T L +Y K G++ Y ++F + Q ++ WN MI Y+
Sbjct: 251 KEIHCHAVRSRIETGD-VMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309
Query: 64 RIDSHKNGVLMYLDL-----LKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQN 118
R + L + + L+ DV P R I G + + + ++
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLET 369
Query: 119 ALISTYCLCGEVDMARGIF 137
ALI Y CG++ A IF
Sbjct: 370 ALIDMYGECGQLKSAEVIF 388
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGD-LKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H I+ G + + Y K D ++ KVF ++++ V WN+MI GYS
Sbjct: 152 RQVHGFVIRGGFDSDVFVGNGM--ITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYS 209
Query: 64 RIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFK--GFTRDIAGSLE------KSCIVMRV 114
+ S ++ MY +L SD + + T +F+ G + D+ LE ++ I M +
Sbjct: 210 QSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDL 269
Query: 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144
+ NA+I Y CG +D AR +F E D
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKD 299
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKG-DLKYECKVFRKITQPSVFLWNTMIKGYS 63
+Q+H Q IK G L T + Y KG + K KVF ++ + +V W T+I GY+
Sbjct: 113 RQLHCQCIKFGFLDDVSVG--TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYA 170
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMR------VF 115
R + + +++ + + +++TF + G L+ +V++ +
Sbjct: 171 RNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIP 230
Query: 116 VQNALISTYCLCGEVDMARGIF 137
V N+LI+ Y CG V AR +F
Sbjct: 231 VSNSLINLYLKCGNVRKARILF 252
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
++H+Q +K + T L Y K G ++ KVF I + W+ M+ GY++
Sbjct: 414 EVHAQVVKTNY--ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK---------GFTRDIAGSLEKSCIVMRVF 115
+ + M+ +L K ++ + +TF + G + G KS + +
Sbjct: 472 TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLC 531
Query: 116 VQNALISTYCLCGEVDMARGIFYMSCEDD 144
V +AL++ Y G ++ A +F E D
Sbjct: 532 VSSALLTMYAKKGNIESAEEVFKRQREKD 560
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIK 60
M Q KQ H IK L C + +KG+++ +VF++ + + WN+MI
Sbjct: 511 MGQGKQFHGFAIK-SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMIS 569
Query: 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNAL 120
GY++ + ++ ++ K V+ D TF +F T AG +E+ + V++
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTH--AGLVEEGEKYFDIMVRDCK 627
Query: 121 IS 122
I+
Sbjct: 628 IA 629
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYSR 64
Q+H+ +K GL P + LY K G+++ +F K SV WN+MI GY+
Sbjct: 215 QVHTVVVKNGL--DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272
Query: 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMRVFV 116
+ M+ + + VR +F + K FT + S+ K + +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 117 QNALISTYCLC 127
+ AL+ Y C
Sbjct: 333 RTALMVAYSKC 343
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYEC-KVFRKI-TQPSVFLWNTMIKGY 62
+Q+H +K G L + +T ++ Y K + ++F++I +V W MI G+
Sbjct: 315 EQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGF 372
Query: 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF----TRDIAGSLEKSCIVMRVFVQN 118
+ D + V ++ ++ + VR + +T+ + ++ + K+ V
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGT 432
Query: 119 ALISTYCLCGEVDMARGIF 137
AL+ Y G+V+ A +F
Sbjct: 433 ALLDAYVKLGKVEEAAKVF 451
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR--RDNYTFPF 92
G + Y K+F ++ Q S+ +N +I+ Y R + + + +++ ++ V+ D YT+PF
Sbjct: 63 GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPF 122
Query: 93 LFKG--------FTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF 137
+ K + G + +S +VQNAL++ Y G+V+MAR +F
Sbjct: 123 VAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVF 175
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 10 QTIKLGLLTKPHCPK---------QTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMI 59
+++KLGL+ + Q L +Y G ++ VF + V WNTMI
Sbjct: 131 KSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMI 190
Query: 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIV 111
GY R + ++M+ ++ V D+ T + R++ +E+ +
Sbjct: 191 SGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLG 250
Query: 112 MRVFVQNALISTYCLCGEVDMARGIF 137
++ V+NAL++ Y CG +D AR +F
Sbjct: 251 DKIEVKNALVNMYLKCGRMDEARFVF 276
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQP----SVFLW 55
+ Q IH K G ++ T + +Y K G L+ K+F I + V LW
Sbjct: 436 LRQAMNIHCYLTKTGFMSS--LDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLW 493
Query: 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91
+I GY N + +++++++S V + TF
Sbjct: 494 GALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFT 529
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 1 MHQLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKIT-QPSVFLWNT 57
+++L++IH+ I LGL + + +Y E VFR+++ +V+LWN+
Sbjct: 20 LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPAS---SLSVFRRVSPAKNVYLWNS 76
Query: 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG----FTRDIAGSLEKSCIVM- 112
+I+ +S+ + Y L +S V D YTFP + K F ++ + + + M
Sbjct: 77 IIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMG 136
Query: 113 ---RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDL--HELFPEY 167
+FV NAL+ Y G + AR +F D+ + +L+ ++ H + E
Sbjct: 137 FESDLFVGNALVDMYSRMGLLTRARQVF-----DEMPVRDLVSWNSLISGYSSHGYYEEA 191
Query: 168 LVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNL 202
L L +++ ++P S P GNL
Sbjct: 192 LEIYHELKNSW------IVPDSFTVSSVLPAFGNL 220
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 42 KVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--GFTR 99
+VF ++ +NTMI GY +++ + V M+L+ L + D T + + G R
Sbjct: 263 RVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLR 321
Query: 100 DIA------GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIF-YMSCEDDDGLHELIR 152
D++ + K+ V+ V+N LI Y CG++ AR +F M C+D + +I
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381
Query: 153 IKAVDDDLHELFPEYLVQML 172
DL E + + M+
Sbjct: 382 GYIQSGDLMEAMKLFKMMMI 401
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEK-GDLKYECKVFRKITQPSVFLWNTMIKGYS 63
K +HS IK G+ + +Y K G++ K+F + WNT+I
Sbjct: 428 KGLHSNGIKSGICIDLSVSNAL--IDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACV 485
Query: 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKS--CIVMR------VF 115
R G+ + + KS+V D TF A L K C ++R +
Sbjct: 486 RFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545
Query: 116 VQNALISTYCLCGEVDMARGIF 137
+ NALI Y CG ++ + +F
Sbjct: 546 IGNALIEMYSKCGCLENSSRVF 567
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 5 KQIHSQTIKLGLLTKPHCPKQTRYLLL--YEK-GDLKYECKVFRKITQPSVFLWNTMIKG 61
K I++ +K G + + R +L+ Y K GD+ VF + WN++I G
Sbjct: 327 KYIYNYMLKAGFVLE----STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382
Query: 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--------GFTRDIAGSLEKSCIVMR 113
Y + + ++ ++ + + D+ T+ L F + + + KS I +
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442
Query: 114 VFVQNALISTYCLCGEVDMARGIF 137
+ V NALI Y CGEV + IF
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIF 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,932,046
Number of Sequences: 539616
Number of extensions: 3770538
Number of successful extensions: 8346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 7268
Number of HSP's gapped (non-prelim): 986
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)