Query 042210
Match_columns 230
No_of_seqs 178 out of 2337
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4E-41 8.6E-46 304.7 15.2 215 2-228 241-469 (697)
2 PLN03081 pentatricopeptide (PP 100.0 1.1E-39 2.3E-44 295.4 15.4 215 2-228 140-367 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-39 7E-44 298.2 15.4 215 2-228 204-431 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-38 4.8E-43 292.7 14.3 215 2-228 454-691 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 4.5E-38 9.8E-43 290.6 15.9 214 2-228 305-531 (857)
6 PLN03218 maturation of RBCL 1; 100.0 4.2E-38 9E-43 290.8 14.1 215 2-228 559-796 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.6 3.4E-16 7.4E-21 93.7 5.4 50 50-99 1-50 (50)
8 PRK11788 tetratricopeptide rep 99.3 2.5E-10 5.5E-15 96.9 17.6 174 2-178 158-354 (389)
9 PRK11788 tetratricopeptide rep 99.3 1.1E-10 2.4E-15 99.1 14.1 206 3-221 125-353 (389)
10 PF13041 PPR_2: PPR repeat fam 99.3 5.9E-12 1.3E-16 75.2 4.6 45 113-157 2-50 (50)
11 TIGR02917 PEP_TPR_lipo putativ 99.0 2.3E-08 5E-13 92.5 16.0 185 23-224 673-874 (899)
12 TIGR02917 PEP_TPR_lipo putativ 98.9 5.1E-08 1.1E-12 90.2 16.7 117 23-142 571-697 (899)
13 KOG4422 Uncharacterized conser 98.9 7.9E-08 1.7E-12 80.1 14.6 135 2-142 224-384 (625)
14 PF12854 PPR_1: PPR repeat 98.9 3.1E-09 6.8E-14 57.7 3.8 29 113-141 6-34 (34)
15 PF12854 PPR_1: PPR repeat 98.8 4E-09 8.7E-14 57.3 3.5 30 49-78 4-33 (34)
16 TIGR00756 PPR pentatricopeptid 98.8 1.1E-08 2.4E-13 55.7 4.4 35 53-87 1-35 (35)
17 KOG4318 Bicoid mRNA stability 98.8 3.1E-08 6.7E-13 88.7 9.3 188 6-207 11-292 (1088)
18 PF13812 PPR_3: Pentatricopept 98.7 2.2E-08 4.8E-13 54.3 4.2 34 52-85 1-34 (34)
19 KOG4422 Uncharacterized conser 98.7 1E-06 2.3E-11 73.6 14.0 167 3-171 256-459 (625)
20 PF13429 TPR_15: Tetratricopep 98.5 7.8E-07 1.7E-11 72.4 9.1 197 2-214 61-276 (280)
21 PF01535 PPR: PPR repeat; Int 98.5 1.9E-07 4.1E-12 49.4 3.4 31 53-83 1-31 (31)
22 PF01535 PPR: PPR repeat; Int 98.3 4.5E-07 9.7E-12 47.9 2.6 30 115-144 1-30 (31)
23 TIGR02521 type_IV_pilW type IV 98.3 0.00017 3.7E-09 55.7 17.8 135 3-141 49-196 (234)
24 PRK15174 Vi polysaccharide exp 98.3 4.5E-05 9.8E-10 69.4 16.2 117 23-142 148-278 (656)
25 TIGR00756 PPR pentatricopeptid 98.1 2.3E-06 4.9E-11 46.3 2.9 28 115-142 1-28 (35)
26 PRK10747 putative protoheme IX 98.1 4.3E-05 9.3E-10 65.5 10.9 197 2-215 135-357 (398)
27 TIGR02521 type_IV_pilW type IV 98.0 0.00019 4.1E-09 55.5 13.1 176 23-213 35-230 (234)
28 TIGR00540 hemY_coli hemY prote 98.0 0.00016 3.6E-09 62.1 13.8 207 3-225 136-374 (409)
29 TIGR00990 3a0801s09 mitochondr 98.0 0.00029 6.2E-09 63.8 15.9 107 33-141 377-494 (615)
30 PF13429 TPR_15: Tetratricopep 98.0 4.3E-05 9.3E-10 62.2 9.0 147 18-168 108-275 (280)
31 PRK09782 bacteriophage N4 rece 98.0 0.00047 1E-08 65.3 16.9 196 3-216 494-707 (987)
32 PRK15174 Vi polysaccharide exp 98.0 0.00047 1E-08 62.9 16.0 142 25-170 218-381 (656)
33 PF13812 PPR_3: Pentatricopept 97.9 7.6E-06 1.7E-10 44.0 2.6 30 115-144 2-31 (34)
34 TIGR00990 3a0801s09 mitochondr 97.9 0.0011 2.3E-08 60.2 17.6 165 2-169 311-495 (615)
35 KOG4318 Bicoid mRNA stability 97.9 1.4E-05 3E-10 72.2 4.8 89 74-169 12-107 (1088)
36 PRK12370 invasion protein regu 97.8 0.0014 3.1E-08 58.6 15.6 168 3-176 322-508 (553)
37 PF06239 ECSIT: Evolutionarily 97.7 0.0001 2.2E-09 56.9 6.5 86 18-103 45-154 (228)
38 PRK10049 pgaA outer membrane p 97.7 0.0022 4.8E-08 59.6 16.3 167 2-171 254-457 (765)
39 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0012 2.6E-08 56.2 12.5 117 23-142 173-296 (395)
40 PF08579 RPM2: Mitochondrial r 97.7 0.00027 5.8E-09 48.8 6.9 76 23-100 29-117 (120)
41 KOG1840 Kinesin light chain [C 97.6 0.00091 2E-08 58.6 11.8 203 1-214 215-478 (508)
42 PRK11447 cellulose synthase su 97.6 0.0014 3.1E-08 63.6 14.2 136 2-141 478-664 (1157)
43 PRK12370 invasion protein regu 97.6 0.0029 6.3E-08 56.6 15.2 163 2-171 355-536 (553)
44 PRK10049 pgaA outer membrane p 97.6 0.0036 7.8E-08 58.2 15.8 135 2-142 32-178 (765)
45 PF10037 MRP-S27: Mitochondria 97.5 0.00096 2.1E-08 57.2 10.1 108 18-127 64-186 (429)
46 PRK09782 bacteriophage N4 rece 97.5 0.008 1.7E-07 57.2 16.4 134 3-142 527-671 (987)
47 PF10037 MRP-S27: Mitochondria 97.4 0.0012 2.7E-08 56.5 9.4 79 20-100 103-186 (429)
48 KOG1126 DNA-binding cell divis 97.4 0.0024 5.2E-08 56.4 11.2 199 3-215 337-620 (638)
49 PRK11447 cellulose synthase su 97.4 0.0054 1.2E-07 59.7 14.8 114 27-142 277-413 (1157)
50 PRK10747 putative protoheme IX 97.4 0.028 6.1E-07 48.2 17.7 164 2-171 204-387 (398)
51 PF04733 Coatomer_E: Coatomer 97.4 0.00041 9E-09 56.8 5.9 181 23-216 39-231 (290)
52 PRK14574 hmsH outer membrane p 97.4 0.023 5E-07 53.1 17.8 142 2-145 309-483 (822)
53 PF04733 Coatomer_E: Coatomer 97.3 0.0038 8.2E-08 51.2 10.9 105 33-142 114-229 (290)
54 COG2956 Predicted N-acetylgluc 97.2 0.0066 1.4E-07 49.7 11.1 203 2-220 52-283 (389)
55 PRK14574 hmsH outer membrane p 97.1 0.025 5.3E-07 52.9 14.7 132 33-171 46-199 (822)
56 KOG1126 DNA-binding cell divis 97.0 0.0038 8.2E-08 55.2 8.6 174 36-216 334-519 (638)
57 PRK11189 lipoprotein NlpI; Pro 97.0 0.043 9.2E-07 45.1 13.9 175 27-216 72-266 (296)
58 PRK15359 type III secretion sy 96.9 0.028 6E-07 41.0 10.8 93 57-150 29-130 (144)
59 TIGR00540 hemY_coli hemY prote 96.8 0.25 5.5E-06 42.5 18.1 163 2-166 204-395 (409)
60 PF05843 Suf: Suppressor of fo 96.8 0.024 5.2E-07 46.2 10.9 39 104-142 55-98 (280)
61 KOG1070 rRNA processing protei 96.7 0.02 4.3E-07 55.0 10.7 120 17-140 1454-1590(1710)
62 COG4783 Putative Zn-dependent 96.7 0.12 2.6E-06 44.5 14.4 131 3-148 324-462 (484)
63 KOG1070 rRNA processing protei 96.7 0.072 1.6E-06 51.4 14.1 167 1-171 1474-1664(1710)
64 COG3071 HemY Uncharacterized e 96.6 0.19 4.2E-06 42.2 15.0 183 25-218 159-393 (400)
65 PF05843 Suf: Suppressor of fo 96.6 0.018 3.8E-07 47.0 8.9 127 23-153 5-148 (280)
66 PF08579 RPM2: Mitochondrial r 96.6 0.018 3.9E-07 39.9 7.4 45 56-100 29-74 (120)
67 PRK10370 formate-dependent nit 96.5 0.097 2.1E-06 40.4 11.9 92 49-142 70-172 (198)
68 PF06239 ECSIT: Evolutionarily 96.4 0.033 7.1E-07 43.3 8.8 108 37-156 30-149 (228)
69 KOG1840 Kinesin light chain [C 96.4 0.06 1.3E-06 47.5 11.5 135 3-141 308-477 (508)
70 COG5010 TadD Flp pilus assembl 96.2 0.32 7E-06 38.7 13.6 107 33-140 78-194 (257)
71 cd00189 TPR Tetratricopeptide 96.2 0.059 1.3E-06 34.4 8.3 26 115-140 69-94 (100)
72 KOG4626 O-linked N-acetylgluco 96.2 0.094 2E-06 46.8 11.2 188 15-220 280-488 (966)
73 TIGR02552 LcrH_SycD type III s 96.1 0.081 1.8E-06 37.6 9.4 88 25-142 23-113 (135)
74 PRK11189 lipoprotein NlpI; Pro 96.1 0.63 1.4E-05 38.2 15.5 160 3-170 82-265 (296)
75 PF04840 Vps16_C: Vps16, C-ter 96.0 0.45 9.8E-06 39.6 14.3 117 23-153 181-299 (319)
76 KOG2003 TPR repeat-containing 96.0 0.19 4.2E-06 43.2 11.8 137 33-171 536-690 (840)
77 KOG3785 Uncharacterized conser 95.8 0.082 1.8E-06 44.1 8.9 143 3-149 341-498 (557)
78 PF14559 TPR_19: Tetratricopep 95.8 0.042 9E-07 34.1 5.9 40 113-152 24-65 (68)
79 PF09976 TPR_21: Tetratricopep 95.8 0.26 5.7E-06 35.7 10.8 107 33-139 23-143 (145)
80 PF03704 BTAD: Bacterial trans 95.8 0.027 5.9E-07 40.9 5.6 65 23-89 66-138 (146)
81 PF12921 ATP13: Mitochondrial 95.8 0.11 2.5E-06 36.9 8.5 80 21-102 3-103 (126)
82 TIGR03302 OM_YfiO outer membra 95.8 0.56 1.2E-05 36.8 13.5 146 23-170 37-232 (235)
83 KOG1915 Cell cycle control pro 95.8 0.19 4.2E-06 43.5 11.0 104 33-138 153-268 (677)
84 KOG1155 Anaphase-promoting com 95.7 0.62 1.3E-05 40.3 13.8 57 113-169 431-494 (559)
85 TIGR02552 LcrH_SycD type III s 95.7 0.13 2.7E-06 36.6 8.7 89 2-95 34-126 (135)
86 cd05804 StaR_like StaR_like; a 95.6 0.68 1.5E-05 38.6 14.3 108 34-142 93-214 (355)
87 PRK15179 Vi polysaccharide bio 95.6 0.39 8.5E-06 44.3 13.4 126 23-152 90-229 (694)
88 PF12895 Apc3: Anaphase-promot 95.6 0.044 9.5E-07 35.8 5.6 74 66-139 3-83 (84)
89 KOG1914 mRNA cleavage and poly 95.6 0.75 1.6E-05 40.6 14.1 102 52-153 366-480 (656)
90 PRK15359 type III secretion sy 95.6 0.3 6.5E-06 35.5 10.4 87 23-112 28-119 (144)
91 KOG2002 TPR-containing nuclear 95.5 0.086 1.9E-06 49.0 8.7 138 2-142 629-797 (1018)
92 KOG3616 Selective LIM binding 95.5 0.099 2.1E-06 47.6 8.8 104 33-145 744-855 (1636)
93 PF09295 ChAPs: ChAPs (Chs5p-A 95.5 0.31 6.6E-06 41.8 11.5 112 56-171 173-294 (395)
94 COG3071 HemY Uncharacterized e 95.5 1.3 2.9E-05 37.4 16.5 162 4-171 206-387 (400)
95 KOG1914 mRNA cleavage and poly 95.4 0.64 1.4E-05 41.0 13.1 120 17-142 364-500 (656)
96 KOG1128 Uncharacterized conser 95.4 0.19 4.2E-06 45.5 10.1 177 18-214 396-615 (777)
97 cd00189 TPR Tetratricopeptide 95.4 0.16 3.5E-06 32.2 7.7 84 24-110 5-93 (100)
98 COG5010 TadD Flp pilus assembl 95.3 1.1 2.4E-05 35.8 13.1 105 33-139 112-227 (257)
99 COG2956 Predicted N-acetylgluc 95.3 1.5 3.2E-05 36.4 14.4 30 113-142 248-277 (389)
100 KOG3941 Intermediate in Toll s 95.2 0.068 1.5E-06 43.2 6.1 78 35-112 86-186 (406)
101 PF13762 MNE1: Mitochondrial s 95.2 0.21 4.6E-06 36.3 8.2 91 9-101 26-129 (145)
102 KOG3081 Vesicle coat complex C 95.1 0.54 1.2E-05 37.8 10.8 38 104-141 192-234 (299)
103 TIGR02795 tol_pal_ybgF tol-pal 95.1 0.53 1.1E-05 32.2 10.0 27 116-142 78-104 (119)
104 KOG1129 TPR repeat-containing 95.0 0.28 6E-06 40.6 9.3 123 16-142 219-352 (478)
105 KOG1129 TPR repeat-containing 95.0 0.18 3.9E-06 41.7 8.1 186 17-216 253-459 (478)
106 KOG3060 Uncharacterized conser 94.9 1.3 2.8E-05 35.5 12.4 135 3-142 30-182 (289)
107 KOG1915 Cell cycle control pro 94.6 1.2 2.6E-05 38.8 12.3 136 2-142 90-235 (677)
108 cd05804 StaR_like StaR_like; a 94.6 2.3 5.1E-05 35.4 16.0 117 23-142 45-176 (355)
109 KOG4626 O-linked N-acetylgluco 94.4 0.8 1.7E-05 41.2 11.2 120 23-146 358-490 (966)
110 PF12921 ATP13: Mitochondrial 94.4 0.28 6.1E-06 34.9 7.2 91 51-154 1-97 (126)
111 KOG2003 TPR repeat-containing 94.2 0.38 8.3E-06 41.5 8.6 114 12-129 583-709 (840)
112 KOG2047 mRNA splicing factor [ 94.1 3.2 6.9E-05 37.7 14.2 110 33-142 150-276 (835)
113 KOG2053 Mitochondrial inherita 94.1 0.88 1.9E-05 42.3 11.2 108 17-126 39-156 (932)
114 COG3063 PilF Tfp pilus assembl 94.1 2.3 5E-05 33.5 13.7 45 33-77 47-94 (250)
115 PRK02603 photosystem I assembl 94.1 1.5 3.3E-05 32.7 11.1 27 54-80 37-63 (172)
116 KOG3081 Vesicle coat complex C 94.1 0.66 1.4E-05 37.3 9.2 111 94-215 115-236 (299)
117 COG4783 Putative Zn-dependent 94.0 1.1 2.4E-05 38.9 11.1 105 33-139 318-433 (484)
118 PF14559 TPR_19: Tetratricopep 93.9 0.096 2.1E-06 32.4 3.6 49 33-81 3-54 (68)
119 COG5107 RNA14 Pre-mRNA 3'-end 93.8 1.2 2.7E-05 38.5 10.8 90 52-141 397-493 (660)
120 PF12895 Apc3: Anaphase-promot 93.7 0.19 4.1E-06 32.7 4.9 44 33-76 37-82 (84)
121 TIGR03302 OM_YfiO outer membra 93.5 2.9 6.3E-05 32.6 14.9 24 55-78 36-59 (235)
122 PF13432 TPR_16: Tetratricopep 93.4 0.28 6E-06 30.0 5.0 52 27-80 5-59 (65)
123 TIGR02795 tol_pal_ybgF tol-pal 93.3 1.8 3.8E-05 29.4 9.9 86 25-112 8-103 (119)
124 KOG1173 Anaphase-promoting com 93.2 1.1 2.4E-05 39.6 9.9 123 33-155 392-532 (611)
125 KOG0547 Translocase of outer m 93.1 1.8 3.9E-05 37.9 10.8 45 33-77 440-487 (606)
126 PF12569 NARP1: NMDA receptor- 93.1 6.2 0.00013 35.2 16.3 134 6-145 132-293 (517)
127 PLN03088 SGT1, suppressor of 93.0 1.4 3E-05 37.3 10.2 92 33-152 14-110 (356)
128 PRK15179 Vi polysaccharide bio 93.0 4.2 9.1E-05 37.7 13.8 106 2-112 103-215 (694)
129 KOG3941 Intermediate in Toll s 92.8 1.2 2.5E-05 36.4 8.8 105 38-142 51-187 (406)
130 KOG1155 Anaphase-promoting com 92.6 4.8 0.0001 35.1 12.6 134 2-141 347-493 (559)
131 PF13170 DUF4003: Protein of u 92.6 1.7 3.6E-05 35.9 9.8 132 52-186 60-226 (297)
132 KOG2076 RNA polymerase III tra 92.5 2.7 5.9E-05 39.2 11.7 94 51-144 413-513 (895)
133 PF12569 NARP1: NMDA receptor- 92.5 2.8 6.1E-05 37.3 11.7 113 94-214 201-333 (517)
134 smart00299 CLH Clathrin heavy 92.2 3.2 6.9E-05 29.7 13.4 120 23-156 11-136 (140)
135 CHL00033 ycf3 photosystem I as 92.0 3 6.4E-05 30.9 10.0 27 54-80 37-63 (168)
136 PLN03088 SGT1, suppressor of 92.0 1.9 4.2E-05 36.4 9.8 90 2-97 19-113 (356)
137 KOG4570 Uncharacterized conser 91.9 1 2.3E-05 37.1 7.6 86 23-112 68-162 (418)
138 KOG2796 Uncharacterized conser 91.9 5.9 0.00013 32.1 11.8 126 23-152 181-326 (366)
139 COG5107 RNA14 Pre-mRNA 3'-end 91.8 5 0.00011 35.0 11.8 114 23-142 401-530 (660)
140 PF13424 TPR_12: Tetratricopep 91.6 0.13 2.9E-06 32.7 1.9 54 23-78 9-72 (78)
141 KOG2002 TPR-containing nuclear 91.5 0.57 1.2E-05 43.9 6.4 116 36-152 627-758 (1018)
142 KOG1127 TPR repeat-containing 91.3 2 4.4E-05 40.7 9.6 128 6-142 477-624 (1238)
143 PRK15363 pathogenicity island 91.3 4.5 9.7E-05 30.0 9.8 79 33-139 47-128 (157)
144 PRK14720 transcript cleavage f 91.0 4.9 0.00011 38.2 12.0 119 14-141 24-176 (906)
145 COG3063 PilF Tfp pilus assembl 91.0 6.2 0.00013 31.2 10.7 144 4-151 54-210 (250)
146 KOG2047 mRNA splicing factor [ 90.9 12 0.00027 34.1 14.7 162 2-169 494-718 (835)
147 PF13432 TPR_16: Tetratricopep 90.9 0.98 2.1E-05 27.5 5.3 27 114-140 31-57 (65)
148 PF00637 Clathrin: Region in C 90.7 0.067 1.4E-06 38.7 -0.2 112 23-157 11-137 (143)
149 PF13371 TPR_9: Tetratricopept 90.6 0.97 2.1E-05 28.1 5.3 52 27-80 3-57 (73)
150 KOG2376 Signal recognition par 90.1 1.6 3.4E-05 39.0 7.5 175 25-212 18-201 (652)
151 PF13428 TPR_14: Tetratricopep 90.0 0.77 1.7E-05 25.8 3.9 36 115-150 2-40 (44)
152 KOG2076 RNA polymerase III tra 89.9 4.4 9.5E-05 37.9 10.4 171 26-213 287-510 (895)
153 PF03704 BTAD: Bacterial trans 89.6 1.3 2.8E-05 32.0 5.9 41 116-156 64-107 (146)
154 smart00299 CLH Clathrin heavy 89.6 4.1 8.9E-05 29.1 8.5 89 53-142 8-97 (140)
155 PF09976 TPR_21: Tetratricopep 89.6 2.2 4.9E-05 30.8 7.1 102 3-110 29-143 (145)
156 KOG0985 Vesicle coat protein c 89.4 14 0.0003 35.7 13.2 101 50-154 1131-1258(1666)
157 PRK14720 transcript cleavage f 89.3 9.8 0.00021 36.3 12.5 130 23-170 120-283 (906)
158 COG3629 DnrI DNA-binding trans 89.2 2.7 5.9E-05 34.2 7.8 72 23-96 157-236 (280)
159 KOG3616 Selective LIM binding 89.0 2.5 5.4E-05 39.0 8.0 78 64-146 744-823 (1636)
160 PRK15363 pathogenicity island 88.9 3.6 7.7E-05 30.5 7.6 57 113-169 68-131 (157)
161 PRK10803 tol-pal system protei 88.9 6 0.00013 32.0 9.7 87 54-142 145-245 (263)
162 KOG3785 Uncharacterized conser 88.7 1.9 4.2E-05 36.3 6.7 180 23-215 289-490 (557)
163 KOG4340 Uncharacterized conser 88.5 5.6 0.00012 32.8 9.1 113 28-141 151-337 (459)
164 KOG0547 Translocase of outer m 88.5 5.7 0.00012 34.9 9.6 111 27-141 368-489 (606)
165 PF12688 TPR_5: Tetratrico pep 88.3 7 0.00015 27.5 9.5 21 58-78 44-64 (120)
166 PF04840 Vps16_C: Vps16, C-ter 88.1 14 0.00031 30.8 11.9 85 17-115 205-292 (319)
167 TIGR02561 HrpB1_HrpK type III 88.0 4.4 9.6E-05 29.7 7.5 71 23-98 11-87 (153)
168 PF12688 TPR_5: Tetratrico pep 88.0 7.1 0.00015 27.5 8.5 92 2-99 18-118 (120)
169 PF13176 TPR_7: Tetratricopept 87.9 1.1 2.5E-05 23.9 3.5 24 116-139 1-24 (36)
170 PF00637 Clathrin: Region in C 87.9 0.18 3.9E-06 36.4 0.3 111 5-129 27-140 (143)
171 PF13424 TPR_12: Tetratricopep 87.8 2.5 5.4E-05 26.7 5.7 65 54-139 7-71 (78)
172 KOG1173 Anaphase-promoting com 87.6 4.3 9.4E-05 36.1 8.5 97 113-222 413-523 (611)
173 KOG1125 TPR repeat-containing 87.3 13 0.00029 33.1 11.3 94 5-103 414-514 (579)
174 KOG0985 Vesicle coat protein c 87.3 22 0.00048 34.4 13.1 98 33-138 1087-1190(1666)
175 PRK10370 formate-dependent nit 87.1 12 0.00026 28.8 11.5 94 16-112 68-171 (198)
176 CHL00033 ycf3 photosystem I as 87.0 10 0.00022 27.9 9.9 57 23-81 39-101 (168)
177 KOG1128 Uncharacterized conser 87.0 3.8 8.1E-05 37.6 7.9 125 23-149 428-588 (777)
178 PLN02789 farnesyltranstransfer 86.6 18 0.00038 30.2 12.1 125 24-151 42-182 (320)
179 TIGR02508 type_III_yscG type I 86.5 5.6 0.00012 27.1 6.7 75 3-83 23-99 (115)
180 COG4235 Cytochrome c biogenesi 86.5 11 0.00023 30.9 9.6 104 50-155 154-270 (287)
181 PF11663 Toxin_YhaV: Toxin wit 86.4 0.98 2.1E-05 32.4 3.3 31 66-98 109-139 (140)
182 KOG2376 Signal recognition par 86.1 22 0.00048 32.1 11.9 138 16-157 336-504 (652)
183 PF14938 SNAP: Soluble NSF att 85.6 15 0.00032 29.9 10.4 19 124-142 206-224 (282)
184 PF13414 TPR_11: TPR repeat; P 84.8 2.4 5.2E-05 25.9 4.4 53 25-79 9-65 (69)
185 PF04053 Coatomer_WDAD: Coatom 83.8 14 0.0003 32.4 9.9 98 23-139 299-398 (443)
186 PF13414 TPR_11: TPR repeat; P 83.3 4.5 9.8E-05 24.7 5.2 26 116-141 5-30 (69)
187 PRK02603 photosystem I assembl 83.0 17 0.00036 27.0 12.3 72 27-102 43-121 (172)
188 PF07721 TPR_4: Tetratricopept 82.1 2.9 6.3E-05 20.4 3.1 24 116-139 3-26 (26)
189 PF13371 TPR_9: Tetratricopept 82.0 3.9 8.4E-05 25.3 4.5 20 123-142 4-23 (73)
190 KOG2280 Vacuolar assembly/sort 81.8 28 0.00061 32.3 11.1 105 23-139 688-795 (829)
191 PF13176 TPR_7: Tetratricopept 81.8 3 6.6E-05 22.1 3.4 25 54-78 1-25 (36)
192 PF09477 Type_III_YscG: Bacter 81.7 10 0.00022 26.2 6.5 74 2-82 23-99 (116)
193 PF13374 TPR_10: Tetratricopep 81.6 3 6.6E-05 22.4 3.5 27 115-141 3-29 (42)
194 KOG1174 Anaphase-promoting com 81.3 33 0.00072 29.8 10.7 151 23-176 336-522 (564)
195 cd00923 Cyt_c_Oxidase_Va Cytoc 81.2 6.4 0.00014 26.6 5.3 31 49-79 39-69 (103)
196 KOG1538 Uncharacterized conser 80.6 32 0.00069 31.7 10.8 65 104-171 766-847 (1081)
197 PF13929 mRNA_stabil: mRNA sta 79.8 14 0.00031 30.2 7.9 106 67-172 143-265 (292)
198 PRK10153 DNA-binding transcrip 79.7 46 0.00099 29.9 13.2 44 113-156 419-464 (517)
199 COG1729 Uncharacterized protei 79.6 24 0.00053 28.5 9.1 89 54-145 144-248 (262)
200 PF09613 HrpB1_HrpK: Bacterial 79.4 23 0.0005 26.3 10.1 73 23-99 11-89 (160)
201 PF10602 RPN7: 26S proteasome 79.3 18 0.0004 27.2 8.1 86 54-141 38-140 (177)
202 KOG3617 WD40 and TPR repeat-co 78.7 13 0.00028 35.1 8.0 68 65-141 925-994 (1416)
203 PF13929 mRNA_stabil: mRNA sta 78.5 30 0.00065 28.4 9.4 104 36-139 143-263 (292)
204 PHA03100 ankyrin repeat protei 76.7 21 0.00046 31.1 8.9 130 6-143 49-202 (480)
205 PF13170 DUF4003: Protein of u 76.3 11 0.00025 31.0 6.6 82 2-87 79-178 (297)
206 KOG4162 Predicted calmodulin-b 76.2 61 0.0013 30.3 11.4 192 7-210 310-537 (799)
207 PLN02789 farnesyltranstransfer 75.5 47 0.001 27.7 12.2 117 3-124 55-186 (320)
208 cd00923 Cyt_c_Oxidase_Va Cytoc 75.1 14 0.00031 25.0 5.6 43 70-112 25-69 (103)
209 COG3898 Uncharacterized membra 74.9 55 0.0012 28.3 12.6 186 23-221 86-298 (531)
210 PLN03098 LPA1 LOW PSII ACCUMUL 74.8 17 0.00036 31.8 7.4 78 23-102 79-176 (453)
211 PF11838 ERAP1_C: ERAP1-like C 74.8 45 0.00099 27.3 10.6 96 2-101 147-249 (324)
212 PF02284 COX5A: Cytochrome c o 74.2 11 0.00024 25.7 5.0 34 79-112 37-72 (108)
213 COG1747 Uncharacterized N-term 74.0 19 0.00042 32.0 7.6 86 54-142 68-159 (711)
214 PHA02875 ankyrin repeat protei 73.5 56 0.0012 27.9 10.6 56 121-177 172-230 (413)
215 PF13174 TPR_6: Tetratricopept 73.2 2.8 6.1E-05 21.2 1.6 22 121-142 7-28 (33)
216 PF14938 SNAP: Soluble NSF att 72.7 38 0.00082 27.5 8.9 114 26-142 42-183 (282)
217 PF02284 COX5A: Cytochrome c o 72.2 7.9 0.00017 26.5 3.9 57 39-96 28-88 (108)
218 cd08819 CARD_MDA5_2 Caspase ac 71.6 26 0.00057 23.1 6.3 65 4-71 21-85 (88)
219 KOG0553 TPR repeat-containing 71.4 50 0.0011 27.2 8.9 87 63-151 92-188 (304)
220 PF13428 TPR_14: Tetratricopep 71.2 11 0.00023 20.9 3.8 28 54-81 3-30 (44)
221 PRK04841 transcriptional regul 71.1 82 0.0018 30.1 12.0 114 25-140 497-638 (903)
222 PF10602 RPN7: 26S proteasome 70.4 35 0.00075 25.7 7.6 57 23-81 40-102 (177)
223 PF13431 TPR_17: Tetratricopep 69.9 5.1 0.00011 21.1 2.2 23 113-135 12-34 (34)
224 PF07079 DUF1347: Protein of u 69.8 70 0.0015 28.2 9.8 114 33-150 18-172 (549)
225 PLN03098 LPA1 LOW PSII ACCUMUL 69.8 71 0.0015 28.1 10.0 60 51-112 74-139 (453)
226 KOG0276 Vesicle coat complex C 69.6 70 0.0015 29.3 10.0 99 33-142 649-749 (794)
227 KOG2053 Mitochondrial inherita 69.4 70 0.0015 30.5 10.4 117 33-151 21-151 (932)
228 KOG0495 HAT repeat protein [RN 69.3 97 0.0021 28.8 15.6 52 113-164 718-772 (913)
229 PRK10153 DNA-binding transcrip 68.9 32 0.00069 30.9 8.1 46 33-78 432-479 (517)
230 PF10366 Vps39_1: Vacuolar sor 68.8 35 0.00076 23.5 8.4 27 54-80 41-67 (108)
231 PF07035 Mic1: Colon cancer-as 68.7 47 0.001 24.9 14.0 112 49-164 26-139 (167)
232 COG3629 DnrI DNA-binding trans 67.8 24 0.00052 28.8 6.5 57 113-169 152-215 (280)
233 PF11848 DUF3368: Domain of un 67.5 16 0.00034 21.0 4.0 36 61-96 11-46 (48)
234 PF11207 DUF2989: Protein of u 67.2 25 0.00055 27.2 6.2 43 95-138 115-164 (203)
235 KOG0495 HAT repeat protein [RN 66.3 1.1E+02 0.0024 28.4 14.6 139 16-157 714-863 (913)
236 PRK10803 tol-pal system protei 64.4 75 0.0016 25.7 9.0 84 25-112 149-244 (263)
237 PRK10866 outer membrane biogen 63.5 74 0.0016 25.3 12.6 46 120-165 181-232 (243)
238 TIGR03504 FimV_Cterm FimV C-te 63.3 11 0.00024 21.3 2.8 23 120-142 5-27 (44)
239 PF13512 TPR_18: Tetratricopep 63.0 56 0.0012 23.8 7.2 67 33-100 22-95 (142)
240 COG3898 Uncharacterized membra 61.5 1.1E+02 0.0024 26.6 12.1 112 55-166 191-317 (531)
241 KOG1125 TPR repeat-containing 61.1 1.2E+02 0.0027 27.3 10.0 86 113-211 429-523 (579)
242 TIGR02508 type_III_yscG type I 60.6 52 0.0011 22.6 6.2 52 120-171 45-98 (115)
243 PF13181 TPR_8: Tetratricopept 60.2 21 0.00046 18.0 3.7 26 116-141 3-28 (34)
244 COG5108 RPO41 Mitochondrial DN 59.6 1.4E+02 0.0031 27.8 10.2 73 23-97 32-113 (1117)
245 PRK15331 chaperone protein Sic 59.5 69 0.0015 24.0 7.1 45 33-77 49-96 (165)
246 PF00515 TPR_1: Tetratricopept 59.0 20 0.00044 18.1 3.3 28 115-142 2-29 (34)
247 COG3118 Thioredoxin domain-con 57.5 1.1E+02 0.0024 25.3 9.0 110 33-142 146-264 (304)
248 PF11207 DUF2989: Protein of u 57.3 42 0.00092 26.0 5.8 77 24-103 112-194 (203)
249 PRK04841 transcriptional regul 56.3 1.3E+02 0.0028 28.7 10.3 109 33-141 464-600 (903)
250 PF10366 Vps39_1: Vacuolar sor 56.3 35 0.00077 23.4 4.9 30 113-142 38-67 (108)
251 PF10475 DUF2450: Protein of u 56.1 1E+02 0.0022 25.3 8.4 98 33-134 110-217 (291)
252 KOG1920 IkappaB kinase complex 56.0 1.9E+02 0.0041 28.8 10.8 21 121-141 1033-1053(1265)
253 KOG1174 Anaphase-promoting com 55.6 1.4E+02 0.0031 26.1 12.2 32 16-49 228-260 (564)
254 smart00804 TAP_C C-terminal do 54.7 14 0.00031 22.7 2.4 23 65-87 38-61 (63)
255 KOG2796 Uncharacterized conser 54.5 1.2E+02 0.0026 24.9 10.4 125 54-181 179-323 (366)
256 PF08631 SPO22: Meiosis protei 53.6 1.2E+02 0.0026 24.6 13.0 139 33-171 5-187 (278)
257 PRK15331 chaperone protein Sic 53.5 70 0.0015 23.9 6.3 78 63-142 48-133 (165)
258 PF02184 HAT: HAT (Half-A-TPR) 52.7 11 0.00024 19.8 1.4 21 129-149 2-24 (32)
259 PF07719 TPR_2: Tetratricopept 52.4 30 0.00065 17.3 3.8 26 116-141 3-28 (34)
260 PF09205 DUF1955: Domain of un 52.4 88 0.0019 22.8 6.3 45 58-103 92-136 (161)
261 PF11846 DUF3366: Domain of un 52.1 70 0.0015 24.2 6.5 32 49-80 141-172 (193)
262 cd08819 CARD_MDA5_2 Caspase ac 52.0 62 0.0013 21.4 5.1 40 126-166 48-87 (88)
263 PF14689 SPOB_a: Sensor_kinase 51.4 21 0.00045 21.8 2.8 29 113-141 22-50 (62)
264 PF13281 DUF4071: Domain of un 51.2 1.6E+02 0.0034 25.3 13.1 73 24-98 146-228 (374)
265 PF10300 DUF3808: Protein of u 50.5 1.1E+02 0.0023 27.1 8.1 108 35-142 247-375 (468)
266 KOG0624 dsRNA-activated protei 50.2 1.6E+02 0.0035 25.1 10.4 116 27-146 114-257 (504)
267 KOG4340 Uncharacterized conser 49.9 1.5E+02 0.0033 24.8 9.7 118 33-151 124-283 (459)
268 PRK10564 maltose regulon perip 49.3 27 0.00058 28.8 3.9 46 50-95 254-300 (303)
269 KOG2908 26S proteasome regulat 48.3 67 0.0014 27.1 6.0 79 23-103 79-173 (380)
270 PF09613 HrpB1_HrpK: Bacterial 48.0 1.1E+02 0.0025 22.7 8.3 35 123-157 53-89 (160)
271 cd07153 Fur_like Ferric uptake 47.5 46 0.001 22.7 4.5 46 58-103 6-51 (116)
272 PF04184 ST7: ST7 protein; In 47.5 1E+02 0.0022 27.5 7.3 47 33-79 271-322 (539)
273 PF04053 Coatomer_WDAD: Coatom 47.4 1.4E+02 0.0031 26.2 8.3 98 33-142 273-375 (443)
274 PF08311 Mad3_BUB1_I: Mad3/BUB 47.3 70 0.0015 22.6 5.4 53 23-77 66-124 (126)
275 KOG0403 Neoplastic transformat 45.6 1.5E+02 0.0034 26.2 7.9 64 93-156 515-585 (645)
276 cd08326 CARD_CASP9 Caspase act 45.5 84 0.0018 20.5 6.3 62 5-71 19-80 (84)
277 PF03943 TAP_C: TAP C-terminal 45.4 12 0.00027 21.9 1.1 23 65-87 26-49 (51)
278 smart00386 HAT HAT (Half-A-TPR 44.7 30 0.00064 16.9 2.5 25 128-152 1-28 (33)
279 PF12796 Ank_2: Ankyrin repeat 44.5 21 0.00046 22.8 2.3 14 125-138 5-18 (89)
280 smart00028 TPR Tetratricopepti 44.1 35 0.00076 15.7 2.9 26 116-141 3-28 (34)
281 KOG0548 Molecular co-chaperone 43.8 1.5E+02 0.0033 26.5 7.8 90 33-124 14-114 (539)
282 PF02607 B12-binding_2: B12 bi 43.8 35 0.00077 21.5 3.2 40 64-103 13-52 (79)
283 KOG4077 Cytochrome c oxidase, 43.7 76 0.0017 22.8 4.9 31 49-79 81-111 (149)
284 KOG4077 Cytochrome c oxidase, 43.1 96 0.0021 22.3 5.3 42 71-112 68-111 (149)
285 cd00280 TRFH Telomeric Repeat 43.0 97 0.0021 23.8 5.7 42 59-103 118-159 (200)
286 PHA02875 ankyrin repeat protei 42.9 2.1E+02 0.0046 24.4 10.2 164 6-178 16-197 (413)
287 KOG2610 Uncharacterized conser 41.4 2.3E+02 0.0049 24.3 9.4 109 33-141 115-236 (491)
288 KOG1156 N-terminal acetyltrans 41.2 3E+02 0.0064 25.6 13.0 102 51-152 142-259 (700)
289 PRK11639 zinc uptake transcrip 41.1 1.5E+02 0.0032 22.1 7.2 46 58-103 31-76 (169)
290 PF01475 FUR: Ferric uptake re 40.5 48 0.001 22.9 3.7 47 57-103 12-58 (120)
291 KOG1538 Uncharacterized conser 40.5 2.5E+02 0.0053 26.3 8.6 108 24-142 708-845 (1081)
292 COG2178 Predicted RNA-binding 39.1 1.1E+02 0.0023 23.7 5.4 17 126-142 133-149 (204)
293 COG3947 Response regulator con 39.1 1.5E+02 0.0032 24.7 6.5 51 26-78 286-339 (361)
294 PF04184 ST7: ST7 protein; In 38.2 3E+02 0.0065 24.7 9.4 54 98-151 270-337 (539)
295 KOG1127 TPR repeat-containing 38.1 2E+02 0.0044 28.2 8.0 29 50-78 594-622 (1238)
296 COG4455 ImpE Protein of avirul 37.3 1.5E+02 0.0033 23.6 6.1 74 23-98 5-83 (273)
297 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 80 0.0017 22.9 4.5 40 7-48 8-47 (145)
298 PRK10564 maltose regulon perip 36.9 45 0.00098 27.5 3.4 33 113-145 256-288 (303)
299 KOG3617 WD40 and TPR repeat-co 36.7 2.8E+02 0.0061 26.9 8.6 75 51-136 966-1057(1416)
300 KOG1156 N-terminal acetyltrans 35.8 1.6E+02 0.0034 27.2 6.7 83 89-171 373-469 (700)
301 cd08326 CARD_CASP9 Caspase act 35.4 1.3E+02 0.0028 19.6 5.0 38 121-158 37-74 (84)
302 COG0735 Fur Fe2+/Zn2+ uptake r 34.8 90 0.002 22.6 4.4 45 58-102 26-70 (145)
303 cd08332 CARD_CASP2 Caspase act 34.6 1.4E+02 0.0029 19.7 6.6 59 5-68 23-81 (90)
304 PHA02878 ankyrin repeat protei 34.1 3.2E+02 0.007 23.9 11.9 56 120-176 204-262 (477)
305 PF11123 DNA_Packaging_2: DNA 33.7 1.2E+02 0.0027 19.4 4.2 31 35-65 11-44 (82)
306 PF11459 DUF2893: Protein of u 32.7 1.3E+02 0.0028 18.9 4.2 49 123-171 13-61 (69)
307 PF13646 HEAT_2: HEAT repeats; 32.2 1.2E+02 0.0025 19.1 4.3 62 17-81 11-73 (88)
308 PF13762 MNE1: Mitochondrial s 32.0 2E+02 0.0044 21.0 7.1 73 54-126 41-127 (145)
309 COG0292 RplT Ribosomal protein 31.7 90 0.002 21.7 3.6 43 81-123 67-112 (118)
310 PF11846 DUF3366: Domain of un 31.5 1.9E+02 0.0042 21.7 6.1 30 113-142 143-172 (193)
311 PHA03100 ankyrin repeat protei 31.5 3.5E+02 0.0076 23.5 9.2 169 5-179 86-280 (480)
312 PF04090 RNA_pol_I_TF: RNA pol 31.0 2.5E+02 0.0055 21.7 8.9 27 55-81 44-70 (199)
313 COG5108 RPO41 Mitochondrial DN 30.9 2.2E+02 0.0048 26.7 6.9 69 57-125 33-114 (1117)
314 PF07443 HARP: HepA-related pr 30.3 29 0.00062 20.8 1.0 32 68-99 8-39 (55)
315 PHA02265 hypothetical protein 30.1 52 0.0011 21.4 2.2 43 130-172 3-50 (103)
316 KOG4555 TPR repeat-containing 30.0 1.3E+02 0.0028 21.9 4.3 85 33-142 55-143 (175)
317 KOG2114 Vacuolar assembly/sort 29.0 3.4E+02 0.0075 26.0 7.9 66 33-103 717-787 (933)
318 KOG4570 Uncharacterized conser 28.7 72 0.0016 26.8 3.3 31 49-79 132-162 (418)
319 PRK05907 hypothetical protein; 28.6 3.2E+02 0.0069 22.7 7.2 77 6-86 142-239 (311)
320 smart00777 Mad3_BUB1_I Mad3/BU 28.5 1.3E+02 0.0028 21.4 4.2 39 38-76 80-123 (125)
321 PF07079 DUF1347: Protein of u 28.5 2.3E+02 0.0049 25.2 6.3 44 56-99 132-179 (549)
322 TIGR01914 cas_Csa4 CRISPR-asso 27.8 3.1E+02 0.0067 23.2 6.7 74 23-97 278-351 (354)
323 KOG0553 TPR repeat-containing 27.3 3.6E+02 0.0079 22.4 7.9 78 33-112 93-176 (304)
324 PLN03192 Voltage-dependent pot 26.8 3E+02 0.0065 26.3 7.6 51 120-171 625-678 (823)
325 PLN03025 replication factor C 26.6 3.7E+02 0.008 22.2 8.1 71 12-87 172-259 (319)
326 PF12926 MOZART2: Mitotic-spin 26.5 2E+02 0.0043 19.0 4.9 28 51-78 42-69 (88)
327 cd07229 Pat_TGL3_like Triacylg 26.2 3.1E+02 0.0067 23.7 6.8 38 7-46 101-142 (391)
328 KOG2114 Vacuolar assembly/sort 25.2 6.3E+02 0.014 24.4 10.7 146 18-170 362-550 (933)
329 CHL00068 rpl20 ribosomal prote 24.9 1.4E+02 0.003 20.9 3.7 43 82-124 68-113 (115)
330 cd00280 TRFH Telomeric Repeat 24.7 3.3E+02 0.0071 21.0 6.1 19 94-112 118-138 (200)
331 PF14853 Fis1_TPR_C: Fis1 C-te 24.6 66 0.0014 18.9 1.8 26 122-147 9-36 (53)
332 PRK07452 DNA polymerase III su 24.6 4E+02 0.0086 21.9 7.7 27 58-85 206-232 (326)
333 PF09119 SicP-binding: SicP bi 24.5 2.1E+02 0.0045 18.6 5.3 51 35-85 20-70 (81)
334 PF14669 Asp_Glu_race_2: Putat 24.4 1.4E+02 0.003 23.3 3.9 52 24-77 137-206 (233)
335 COG4105 ComL DNA uptake lipopr 24.3 3.8E+02 0.0083 21.6 11.5 109 33-142 46-195 (254)
336 PF04124 Dor1: Dor1-like famil 23.9 2.4E+02 0.0053 23.6 5.8 36 56-91 110-146 (338)
337 PF10300 DUF3808: Protein of u 23.9 5.1E+02 0.011 22.9 15.5 116 23-142 192-333 (468)
338 PF11491 DUF3213: Protein of u 23.8 43 0.00092 21.8 0.9 14 88-101 25-38 (88)
339 smart00540 LEM in nuclear memb 23.7 71 0.0015 18.1 1.8 18 5-22 9-26 (44)
340 KOG0991 Replication factor C, 23.5 4E+02 0.0088 21.6 8.4 56 43-100 230-285 (333)
341 PF11817 Foie-gras_1: Foie gra 23.5 2.7E+02 0.0059 22.1 5.8 65 39-103 163-234 (247)
342 KOG2280 Vacuolar assembly/sort 23.0 6.7E+02 0.014 23.9 8.5 85 54-142 686-772 (829)
343 PF10579 Rapsyn_N: Rapsyn N-te 22.9 91 0.002 20.2 2.3 42 33-74 18-65 (80)
344 COG1466 HolA DNA polymerase II 22.4 3.2E+02 0.0069 22.8 6.2 75 7-85 149-241 (334)
345 PRK07914 hypothetical protein; 22.3 4.5E+02 0.0097 21.7 8.2 75 7-86 137-229 (320)
346 TIGR03581 EF_0839 conserved hy 22.3 82 0.0018 24.8 2.4 75 67-141 136-235 (236)
347 COG4235 Cytochrome c biogenesi 22.1 1.5E+02 0.0032 24.5 3.9 93 113-216 155-257 (287)
348 PRK11906 transcriptional regul 22.0 5.6E+02 0.012 22.7 8.2 43 33-77 350-397 (458)
349 TIGR01032 rplT_bact ribosomal 21.9 1.4E+02 0.003 20.8 3.2 38 86-123 71-111 (113)
350 PRK14963 DNA polymerase III su 21.7 5.9E+02 0.013 22.9 8.2 70 12-86 189-275 (504)
351 PRK09462 fur ferric uptake reg 21.6 2.1E+02 0.0045 20.7 4.4 37 67-103 32-68 (148)
352 COG4700 Uncharacterized protei 21.3 4E+02 0.0088 20.8 13.3 86 57-142 94-188 (251)
353 PF09477 Type_III_YscG: Bacter 21.3 3E+02 0.0064 19.2 5.6 68 104-171 25-99 (116)
354 PF09454 Vps23_core: Vps23 cor 20.8 1.9E+02 0.0041 17.8 3.4 50 49-99 5-54 (65)
355 PF10493 Rod_C: Rough deal pro 20.6 5.7E+02 0.012 23.3 7.7 79 76-154 345-445 (551)
356 COG4700 Uncharacterized protei 20.4 4.2E+02 0.0092 20.7 11.1 126 16-149 85-231 (251)
357 KOG4162 Predicted calmodulin-b 20.2 7.6E+02 0.016 23.5 10.7 73 64-138 696-778 (799)
358 TIGR02561 HrpB1_HrpK type III 20.0 3.7E+02 0.008 19.9 8.2 80 5-88 30-113 (153)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-41 Score=304.73 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
+.++++|..+.+.|+.||..+ ++||++|+ ++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~--k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYS--KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHH--HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456777888888888899999 99999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHH
Q 042210 81 SDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIR 152 (230)
Q Consensus 81 ~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li 152 (230)
.|+.||..||++++++|++.|++ |.++|..|. |..+||+||++|+|+|++++|.++|++|.+||++|||+||
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999 999999998 8999999999999999999999999999999999999999
Q ss_pred HHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccc-cCCCccccccccC
Q 042210 153 IKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE-HSQDDMSLISNSI 227 (230)
Q Consensus 153 ~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~-~~~~~~~~~~n~l 227 (230)
.+|+. ++|+++|++|.+.| +.||..||++ +++ +|++.|.+++|.++|..|.+ .|+.|+..+|++|
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~--ll~-------a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLA--VLS-------ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHH--HHH-------HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99985 58999999999999 8999999999 766 99999999999999999986 6999999999987
Q ss_pred C
Q 042210 228 P 228 (230)
Q Consensus 228 ~ 228 (230)
.
T Consensus 469 i 469 (697)
T PLN03081 469 I 469 (697)
T ss_pred H
Confidence 5
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=295.43 Aligned_cols=215 Identities=15% Similarity=0.172 Sum_probs=206.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
+.|.++|..|++.|+.||..+ +.++.+|+ +.|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999999 99999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHH
Q 042210 81 SDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIR 152 (230)
Q Consensus 81 ~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li 152 (230)
.|+.||..||+.++++|++.|+. +.++|..+. |..+||+||++|+++|++++|.++|++|.+||+++||+||
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 99999999999999999999998 999999887 8999999999999999999999999999999999999999
Q ss_pred HHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCCccccccccCC
Q 042210 153 IKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNSIP 228 (230)
Q Consensus 153 ~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~n~l~ 228 (230)
.+|+. ++|+++|++|.+.| +.||.+||++ ++. +|++.|++++|+++|+.|.+.|+.||..+||+|+
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~--ll~-------a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSI--MIR-------IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHH--HHH-------HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 99986 57999999999998 8999999999 666 9999999999999999999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-39 Score=298.20 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=205.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
+.++++|..|.+.|+.||+.+ +++|.+|+ +.|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYV--KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHh--cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456788888888888889999 99999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHH
Q 042210 81 SDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIR 152 (230)
Q Consensus 81 ~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li 152 (230)
.|+.||..||+++|.+|++.|++ +.++|..+. |..+||+||++|+++|++++|+++|++|..||.++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 99999999999999999999999 999999998 9999999999999999999999999999999999999999
Q ss_pred HHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCCccccccccCC
Q 042210 153 IKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNSIP 228 (230)
Q Consensus 153 ~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~n~l~ 228 (230)
.+|.+ ++|+++|++|.+.+ +.||.+|+++ ++. +|++.|++++|.++|+.+.+.|+.|+..+||+|+
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~--ll~-------a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDN-VSPDEITIAS--VLS-------ACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHH--HHH-------HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 99986 57999999999998 8999999999 666 9999999999999999999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-38 Score=292.68 Aligned_cols=215 Identities=13% Similarity=0.159 Sum_probs=190.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
+.|.++|++|++.|+.||..+ +++|.+|+ +.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|+
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~--k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCA--KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 578899999999999999999 99999999 9999999999999998 7899999999999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh--------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC----
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM--------RVFVQNALISTYCLCGEVDMARGIFYMSCE---- 142 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~--------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---- 142 (230)
+|++.|+.||..||+.||++|++.|++ |.++|+.|. |.++||+||++|+++|++++|.++|++|.+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 999999884 788999999999999999999999999986
Q ss_pred CChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCC
Q 042210 143 DDDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQD 218 (230)
Q Consensus 143 ~~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~ 218 (230)
|+..+||++|.+|+. ++|.++|++|.+.| +.||.+||+. ++. +|++.|++++|.++|..|.+.|+.
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~Tyns--LI~-------a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSA--LVD-------VAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHH--HHH-------HHHhCCCHHHHHHHHHHHHHcCCC
Confidence 677899999988875 47888888888888 7888888888 555 888888888888888888888888
Q ss_pred ccccccccCC
Q 042210 219 DMSLISNSIP 228 (230)
Q Consensus 219 ~~~~~~n~l~ 228 (230)
||..+||+|+
T Consensus 682 pd~~tynsLI 691 (1060)
T PLN03218 682 LGTVSYSSLM 691 (1060)
T ss_pred CCHHHHHHHH
Confidence 8888887764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-38 Score=290.58 Aligned_cols=214 Identities=18% Similarity=0.201 Sum_probs=204.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
+.|+++|..|.+.|+.||..+ +++|.+|+ +.|++++|.++|++|..||.++||++|.+|++.|++++|+++|++|++
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~--k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYL--SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHH--hcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 568899999999999999999 99999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHH
Q 042210 81 SDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIR 152 (230)
Q Consensus 81 ~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li 152 (230)
.|+.||..||+++|.+|++.|++ |.++|+.+. +..+||+||++|+++|++++|.++|++|.+||+++||+||
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999 999999998 8999999999999999999999999999999999999999
Q ss_pred HHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCCccccccccCC
Q 042210 153 IKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLISNSIP 228 (230)
Q Consensus 153 ~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~n~l~ 228 (230)
.+|.. ++|+++|++|.. + +.||.+|+.+ ++. +|++.|+++.|+++|..+.+.|+.+|..++|+|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~--lL~-------a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIA--ALS-------ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHH--HHH-------HHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 99985 479999999975 4 7999999999 766 9999999999999999999999999999998874
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-38 Score=290.85 Aligned_cols=215 Identities=10% Similarity=0.048 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHH--hcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHH
Q 042210 2 HQLKQIHSQTIK--LGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLM 74 (230)
Q Consensus 2 ~~a~~~~~~m~~--~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~ 74 (230)
++|.++|++|.+ .|+.||..+ +++|.+|+ +.|++++|.++|++|. .|+..+||++|.+|++.|++++|.++
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~--k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACA--NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 457777777765 467777777 77777777 7777777777777776 56667888888888888888888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc----C
Q 042210 75 YLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSC----E 142 (230)
Q Consensus 75 ~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~----~ 142 (230)
|++|.+.|+.||..||+++|++|++.|++ |.++|+.|. |..+||+||++|+++|++++|.++|++|. .
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888 888888887 88999999999999999999999999996 4
Q ss_pred CChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCC
Q 042210 143 DDDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQD 218 (230)
Q Consensus 143 ~~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~ 218 (230)
||.++||+||.+|+. ++|+++|++|.+.| +.||.+||+. ++. +|++.|++++|.++|.+|.+.|+.
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~s--LL~-------a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSI--LLV-------ASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHH--HHH-------HHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999975 58999999999988 8999999999 655 999999999999999999999999
Q ss_pred ccccccccCC
Q 042210 219 DMSLISNSIP 228 (230)
Q Consensus 219 ~~~~~~n~l~ 228 (230)
||..+||+|.
T Consensus 787 pd~~tynsLI 796 (1060)
T PLN03218 787 PNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHH
Confidence 9999999874
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.64 E-value=3.4e-16 Score=93.73 Aligned_cols=50 Identities=26% Similarity=0.676 Sum_probs=49.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 50 ~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
||+++||++|++|++.|++++|+++|++|++.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.30 E-value=2.5e-10 Score=96.87 Aligned_cols=174 Identities=11% Similarity=-0.036 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHhcCCCCCc----H-HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH----C-PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVL 73 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~----~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~ 73 (230)
++|.+.++.+.+.+-.++.. . ..+...+. +.|++++|...|+++. .| +...+..+...|.+.|++++|..
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL--ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677777777665333221 2 33455666 8888888888888865 33 34567777788888999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh
Q 042210 74 MYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDD 145 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~ 145 (230)
+|+++...+-.....+++.+..+|.+.|++ |...+..+. +...+..+...|.+.|++++|.++|+++.+ |+.
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 999887653222235677888889888888 777777766 445568888999999999999999987765 888
Q ss_pred hhhHHHHHHhh-------hcchhhhHHHHHHHhhhcCchh
Q 042210 146 GLHELIRIKAV-------DDDLHELFPEYLVQMLALPDTF 178 (230)
Q Consensus 146 ~t~n~li~~~~-------~~~~~~~~~~m~~~~~~~p~~~ 178 (230)
.+++.++.... ..+++++|++|.+.+ +.||..
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~ 354 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR 354 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence 88888776543 247889999999888 666644
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.28 E-value=1.1e-10 Score=99.13 Aligned_cols=206 Identities=10% Similarity=-0.009 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCC--CC------hhhHHHHHHHHHhcCChhHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQ--PS------VFLWNTMIKGYSRIDSHKNGVL 73 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~--~~------~~~yn~li~~~~~~~~~~~a~~ 73 (230)
+|..+|+.+.+.. .++..+ ..+...+. +.|++++|.+.++.+.+ |+ ...|..+...+.+.|++++|..
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQ--QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHH--HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555554431 112333 55556666 66666666666665541 11 1123444455556666666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C
Q 042210 74 MYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE--D 143 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~ 143 (230)
.|+++.+.. +.+...+..+...+.+.|++ |.+.++.+. ...+++.+...|.+.|++++|...|+++.+ |
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666665432 11233455555666666666 666666655 134567777778888888888887777664 6
Q ss_pred ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCCc
Q 042210 144 DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDD 219 (230)
Q Consensus 144 ~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~ 219 (230)
+...++.+...+.. ++|.+.++++.+. .||..++.. ++... -.....|+.+++..+++.+.+.++.|
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~--l~~~~----~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHR--LLDYH----LAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHH--HHHHh----hhccCCccchhHHHHHHHHHHHHHhC
Confidence 66555555555443 3455555554443 477666554 22200 01222567888888888888877766
Q ss_pred cc
Q 042210 220 MS 221 (230)
Q Consensus 220 ~~ 221 (230)
+.
T Consensus 352 ~p 353 (389)
T PRK11788 352 KP 353 (389)
T ss_pred CC
Confidence 63
No 10
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=5.9e-12 Score=75.17 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=42.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhhhHHHHHHhhh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE----DDDGLHELIRIKAVD 157 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~----~~~~t~n~li~~~~~ 157 (230)
|+++||++|++|++.|++++|.++|++|.+ ||..|||+||+++++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 678999999999999999999999999986 999999999999863
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=2.3e-08 Score=92.54 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=112.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+. ..|++++|..+++.+. ..+...|..+...+.+.|++++|...|+++...+ |+..++..+..++.+
T Consensus 673 ~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLL--AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 44455555 5555555555555554 2334455556666666666666666666665543 444566666777777
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhh---cchhhhHHH
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVD---DDLHELFPE 166 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~---~~~~~~~~~ 166 (230)
.|+. |...+..+. +...++.+...|.+.|+.++|...|+++.+ ++...++.+...+.. .++++.+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 7776 655555554 677777788888888888888888887764 345566666544432 345555555
Q ss_pred HHHHhhhcCch-hhhhhhhhcccccCCcccccccCCccCCccccccccccCCCcccccc
Q 042210 167 YLVQMLALPDT-FMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSLIS 224 (230)
Q Consensus 167 m~~~~~~~p~~-~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~ 224 (230)
..... |+. .++..+.. .+.+.|++++|..+++.+.+.+.. +..++
T Consensus 829 ~~~~~---~~~~~~~~~~~~---------~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~ 874 (899)
T TIGR02917 829 ALKLA---PNIPAILDTLGW---------LLVEKGEADRALPLLRKAVNIAPE-AAAIR 874 (899)
T ss_pred HHhhC---CCCcHHHHHHHH---------HHHHcCCHHHHHHHHHHHHhhCCC-ChHHH
Confidence 54433 332 22222112 566789999999999888887654 44444
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.93 E-value=5.1e-08 Score=90.23 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=68.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...|. +.|++++|..+++.+. +.+...|..+...|.+.|++++|...|+++.+.. +.+...+..+..++.+
T Consensus 571 ~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 571 LALAQYYL--GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 44555555 6666666666666554 3344556666666666666666666666665432 1233445556666666
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.|++ |...+..+. +...+..+...+.+.|++++|.++++.+.+
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666 555555554 455666666666666666666666666654
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=7.9e-08 Score=80.13 Aligned_cols=135 Identities=8% Similarity=0.100 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhH----HH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKN----GV 72 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~----a~ 72 (230)
+.|+.++++-.....+.+..+ |.+|.+-.+ ..| .++..+|. .||..|+|+++++.++.|+++. |+
T Consensus 224 ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-~~~-----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aal 297 (625)
T KOG4422|consen 224 ERARELYKEHRAAKGKVYREAFNGLIGASSY-SVG-----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAAL 297 (625)
T ss_pred HHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-hcc-----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHH
Confidence 344444444444444555555 555544432 111 23333443 7999999999999999997764 67
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhhcCch---hhHHHhhhh--------------hHhHHHHHHHHHHhcCCHHHHHH
Q 042210 73 LMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG---SLEKSCIVM--------------RVFVQNALISTYCLCGEVDMARG 135 (230)
Q Consensus 73 ~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~---a~~~~~~~~--------------~~~~~~~li~~y~~~g~~~~A~~ 135 (230)
+++.+|++-|+.|...+|..+|.-+++.++. +..+..++. |..-+...++.+.+..+.+-|.+
T Consensus 298 qil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~ 377 (625)
T KOG4422|consen 298 QILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQ 377 (625)
T ss_pred HHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHH
Confidence 7888999999999999999999999998887 444444443 66667788888889999999988
Q ss_pred HHhhccC
Q 042210 136 IFYMSCE 142 (230)
Q Consensus 136 vf~~m~~ 142 (230)
|-.-.+.
T Consensus 378 v~~ll~t 384 (625)
T KOG4422|consen 378 VHGLLKT 384 (625)
T ss_pred HHHHHHc
Confidence 8766553
No 14
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.1e-09 Score=57.72 Aligned_cols=29 Identities=38% Similarity=0.499 Sum_probs=24.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|.++||+||++||+.|++++|.++|++|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 67788888888888888888888888884
No 15
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=4e-09 Score=57.31 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=19.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
.||.++||+||++|++.|++++|.++|++|
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 466666666666666666666666666666
No 16
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.79 E-value=1.1e-08 Score=55.70 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 042210 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87 (230)
Q Consensus 53 ~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 87 (230)
++||++|.+|++.|++++|.++|++|++.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.79 E-value=3.1e-08 Score=88.66 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=116.9
Q ss_pred HHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----------------------------CCChhhHH
Q 042210 6 QIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----------------------------QPSVFLWN 56 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----------------------------~~~~~~yn 56 (230)
.++..+...|+.|+.++ .++|.-|| ..|+++.|- +|..|+ .|-.-+|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt 87 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYT 87 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHH
Confidence 56788999999999999 99999999 999999998 887775 23445788
Q ss_pred HHHHHHHhcCChhHHHHHHHH-HHh-------CCCCCCcccHHHHHHHhhhc--------------Cch--hhHH-----
Q 042210 57 TMIKGYSRIDSHKNGVLMYLD-LLK-------SDVRRDNYTFPFLFKGFTRD--------------IAG--SLEK----- 107 (230)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~-M~~-------~g~~p~~~t~~~ll~~~~~~--------------~~~--a~~~----- 107 (230)
.|+.+|.+.||+.. ++.-++ |.. .|+.--..-|-..|.+|... |-+ +.++
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88888888888765 333333 321 12211111111111111111 101 1111
Q ss_pred -----------Hhhhh--------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChh-----hhHHH
Q 042210 108 -----------SCIVM--------------------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG-----LHELI 151 (230)
Q Consensus 108 -----------~~~~~--------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~-----t~n~l 151 (230)
+.++. ++.+|.++++.-.-.|+++.|..++.+|++.+.. -|-.+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 11111 7788888888888999999999999999985432 24444
Q ss_pred HHHhhhcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcc
Q 042210 152 RIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTP 207 (230)
Q Consensus 152 i~~~~~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~ 207 (230)
++.....+.....+.|...| +.||..|+.- .+. .+.+.|....++.
T Consensus 247 ~g~~~~q~~e~vlrgmqe~g-v~p~seT~ad--yvi-------p~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 247 LGINAAQVFEFVLRGMQEKG-VQPGSETQAD--YVI-------PQLSNGQTKYGEE 292 (1088)
T ss_pred hcCccchHHHHHHHHHHHhc-CCCCcchhHH--HHH-------hhhcchhhhhccc
Confidence 44333334555555666666 8999888877 322 5666555544443
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.73 E-value=2.2e-08 Score=54.30 Aligned_cols=34 Identities=9% Similarity=0.356 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999998
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1e-06 Score=73.63 Aligned_cols=167 Identities=11% Similarity=0.099 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHH----HHHhcC----CCChhhHHHHHHHHHhcCChhH-HH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECK----VFRKIT----QPSVFLWNTMIKGYSRIDSHKN-GV 72 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~----~~~~m~----~~~~~~yn~li~~~~~~~~~~~-a~ 72 (230)
..+++..+|....+.||..| |+++.+.. +.|+++.|+. ++.+|+ .|...+|.-+|.-+++.+++.+ +.
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~a--kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAA--KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 45789999999999999999 99999999 9998887654 556676 8999999999999999888865 55
Q ss_pred HHHHHHHh----CCCC---C-CcccHHHHHHHhhhcCch--hhHHHhhhh-------------hHhHHHHHHHHHHhcCC
Q 042210 73 LMYLDLLK----SDVR---R-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFVQNALISTYCLCGE 129 (230)
Q Consensus 73 ~~~~~M~~----~g~~---p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~~~~li~~y~~~g~ 129 (230)
.+..++.. .-++ | |..-|...+..|.+..+. |.++++... ..+-|..+....|....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 55566543 2233 3 455678889999988887 999998887 45566778888999999
Q ss_pred HHHHHHHHhhccC----CChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 130 VDMARGIFYMSCE----DDDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 130 ~~~A~~vf~~m~~----~~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
++.-.+.++.|.- |+..+-..++.+.-.++++++..++..+|
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 9999999998874 66666666777777788888888877777
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.49 E-value=7.8e-07 Score=72.38 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+.|.+.++.+.+.+-. ++.. ..++.. . ..+++++|.+++...- .++...+...+..+.+.++++++.++++..
T Consensus 61 ~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 61 DEAIEAYEKLLASDKA-NPQDYERLIQL-L--QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccc-c--ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777766533 2333 555555 6 8899999998887653 556677888999999999999999999997
Q ss_pred HhCC-CCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhh
Q 042210 79 LKSD-VRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGL 147 (230)
Q Consensus 79 ~~~g-~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t 147 (230)
.... .+++...|..+-..+.+.|+. |...++... |....+.++..+...|+.++++.+++.... .|...
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL 216 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH
Confidence 6543 556777888888899999999 888888877 788899999999999999998888887754 45556
Q ss_pred hHHHHHHhh----hcchhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 148 HELIRIKAV----DDDLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 148 ~n~li~~~~----~~~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
|..+-.++. .++|++.+++..+.. |+ ..+... .-. ++...|+.++|.++...+-+
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~---p~d~~~~~~--~a~-------~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLN---PDDPLWLLA--YAD-------ALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHS---TT-HHHHHH--HHH-------HHT-----------------
T ss_pred HHHHHHHhcccccccccccccccccccc---ccccccccc--ccc-------cccccccccccccccccccc
Confidence 666655543 468888888866654 43 333333 111 67789999999988776543
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.48 E-value=1.9e-07 Score=49.36 Aligned_cols=31 Identities=13% Similarity=0.504 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042210 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83 (230)
Q Consensus 53 ~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~ 83 (230)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999999885
No 22
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.33 E-value=4.5e-07 Score=47.86 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~~~ 144 (230)
++||+||++|++.|++++|.++|++|.+.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 589999999999999999999999998654
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.30 E-value=0.00017 Score=55.73 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
+|.+.++...+. .|+. .. ..+...+. ..|+.++|.+.+++.. +.+...+..+-..+...|++++|...|++
T Consensus 49 ~A~~~~~~~l~~--~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 49 VAKENLDKALEH--DPDDYLAYLALALYYQ--QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ 124 (234)
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344445444433 2332 22 44445555 6666666666665543 22334455555566666666666666666
Q ss_pred HHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 78 LLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 78 M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.......| ....+..+-..+...|+. |...+.... +...+..+...|.+.|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 125 AIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55432211 223344445555555665 555555444 34455556666666666666666666543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.29 E-value=4.5e-05 Score=69.43 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=60.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+. ..|+.++|...++.+. .|+ ...+..+ ..+.+.|++++|...++.+.+..-.++...+..+...+.+
T Consensus 148 ~~la~~l~--~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 148 ALHLRTLV--LMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHH--HCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 44555555 6666666666665542 222 2222222 2355556666666666665443222233333344455556
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHH----HHHHHhhccC
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDM----ARGIFYMSCE 142 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~----A~~vf~~m~~ 142 (230)
.|+. |...+.... +...+..+-..|.+.|++++ |...|++..+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6665 555555444 45555556666666666654 5555555543
No 25
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=2.3e-06 Score=46.25 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
++||++|++|++.|++++|.++|++|.+
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999986
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.08 E-value=4.3e-05 Score=65.45 Aligned_cols=197 Identities=14% Similarity=0.085 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-H--HHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-P--KQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~--~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
+.|.+.+.++.+ ..|+... . .....+. ..|+.+.|...++.+. +.+......+...|.+.|++++|.+++
T Consensus 135 ~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 135 ARANQHLERAAE--LADNDQLPVEITRVRIQL--ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred HHHHHHHHHHHh--cCCcchHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345566666644 3466543 3 3356777 8999999999999876 345667888999999999999999999
Q ss_pred HHHHhCCCCCCc-------ccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 76 LDLLKSDVRRDN-------YTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 76 ~~M~~~g~~p~~-------~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
..+.+.+..++. .+|..++.--.+..+. ..++|+.+. ++.....+...+.+.|+.++|.+++++..
T Consensus 211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999988755322 1333333333333333 556666654 77788888999999999999999888665
Q ss_pred C--CChhhhHHHHHHh----hhcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccccccc
Q 042210 142 E--DDDGLHELIRIKA----VDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 142 ~--~~~~t~n~li~~~----~~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
+ ||.... ++.+. ..+++++..++..+.. ||...... .+. ..|.+.|++++|+..++.+.+.
T Consensus 291 ~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~---P~~~~l~l--~lg------rl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 291 KRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH---GDTPLLWS--TLG------QLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred hcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC---CCCHHHHH--HHH------HHHHHCCCHHHHHHHHHHHHhc
Confidence 4 232111 11111 1234555555555443 33222111 111 0455667777777777766654
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.04 E-value=0.00019 Score=55.47 Aligned_cols=176 Identities=9% Similarity=-0.033 Sum_probs=122.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. +.|+.++|.+.+++.. +.+...+..+-..|...|++++|...|++..+.. +.+...+..+-..+..
T Consensus 35 ~~la~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 35 VQLALGYL--EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 45567777 9999999999999865 3345678888889999999999999999876643 2234567777788888
Q ss_pred cCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHHHHHHhhh----cchhhh
Q 042210 100 DIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGLHELIRIKAVD----DDLHEL 163 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~li~~~~~----~~~~~~ 163 (230)
.|++ |...+.... ....+..+-..|.+.|++++|.+.|++..+ |+ ...|..+...+.. +++.+.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 8988 888887775 345677778889999999999999998765 43 4455555444433 456666
Q ss_pred HHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCcccccccc
Q 042210 164 FPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPH 213 (230)
Q Consensus 164 ~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~ 213 (230)
+++..+.. |+ ...+.. ... .+...|+.+++..+.+.+.
T Consensus 192 ~~~~~~~~---~~~~~~~~~--~~~-------~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQTY---NQTAESLWL--GIR-------IARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHhC---CCCHHHHHH--HHH-------HHHHHhhHHHHHHHHHHHH
Confidence 66655542 32 222222 111 4456788888777655443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.04 E-value=0.00016 Score=62.12 Aligned_cols=207 Identities=14% Similarity=0.057 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHhcCCCCCc--H-HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPH--C-PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~--~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
.|.+.+....+. .|+.. + -.....+. ..|+.+.|...++.+. .| +...+..+...+.+.|++++|.+.+.
T Consensus 136 ~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l--~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 136 RANQHLEEAAEL--AGNDNILVEIARTRILL--AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred HHHHHHHHHHHh--CCcCchHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455555555433 35543 3 44567777 8999999999999987 34 55678889999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHh---h----hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 77 DLLKSDVRRDNYTFPFLFKGF---T----RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~---~----~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
...+.++.+....-..-..+. . ..... ..+.+.... +...+-.+...+...|+.++|.+++++..+
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 999987653332211111111 1 11111 444555554 788899999999999999999999998865
Q ss_pred --CChhhhH-HHHHHhh---hc---chhhhHHHHHHHhhhcCchh--h-hhhhhhcccccCCcccccccCCccCCccccc
Q 042210 143 --DDDGLHE-LIRIKAV---DD---DLHELFPEYLVQMLALPDTF--M-GEGLEVIPKSQAPREETPRVGNLEEGTPQEG 210 (230)
Q Consensus 143 --~~~~t~n-~li~~~~---~~---~~~~~~~~m~~~~~~~p~~~--t-~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~ 210 (230)
||...-. .++..+. .+ ++.+.+++-.+ ..||.. . ..++.. .+.+.|++++|++.++
T Consensus 292 ~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk---~~p~~~~~~ll~sLg~---------l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 292 KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK---NVDDKPKCCINRALGQ---------LLMKHGEFIEAADAFK 359 (409)
T ss_pred hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH---hCCCChhHHHHHHHHH---------HHHHcccHHHHHHHHH
Confidence 6554210 1222111 12 34444443333 345544 2 223222 4678899999999998
Q ss_pred cccccCCCccccccc
Q 042210 211 RPHEHSQDDMSLISN 225 (230)
Q Consensus 211 ~~~~~~~~~~~~~~n 225 (230)
........||..++.
T Consensus 360 ~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 360 NVAACKEQLDANDLA 374 (409)
T ss_pred HhHHhhcCCCHHHHH
Confidence 655555567766543
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.04 E-value=0.00029 Score=63.82 Aligned_cols=107 Identities=12% Similarity=-0.120 Sum_probs=55.5
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
..|++++|...|++.. +.+...|..+-..+...|++++|...|++-... .| +...+..+-..+.+.|+. |..
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555554432 223344555555555555555555555554332 22 223344444455555555 555
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.++... +...|+.+-..|...|++++|.+.|+.-.
T Consensus 455 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 455 TFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555443 45566666666666666666666666543
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.00 E-value=4.3e-05 Score=62.15 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=94.9
Q ss_pred CCCcH-HHHHHHHhhhccCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccH
Q 042210 18 TKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTF 90 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~ 90 (230)
+++.. ...+..+. +.++.+++..+++... +++...|..+-..+.+.|++++|.+.|++-.+. .| |....
T Consensus 108 ~~~~~l~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~ 183 (280)
T PF13429_consen 108 GDPRYLLSALQLYY--RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDAR 183 (280)
T ss_dssp ----------H-HH--HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHH
T ss_pred cccchhhHHHHHHH--HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH
Confidence 45566 77888888 9999999999998854 456778888889999999999999999996553 35 35568
Q ss_pred HHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH-H----Hhh
Q 042210 91 PFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR-I----KAV 156 (230)
Q Consensus 91 ~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li-~----~~~ 156 (230)
..++..+...|+. +.+++.... |...|..+-.+|...|+.++|...|++... |+..+|-... . .+.
T Consensus 184 ~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 184 NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc
Confidence 8899999999988 666666665 788899999999999999999999998765 6655554432 2 333
Q ss_pred hcchhhhHHHHH
Q 042210 157 DDDLHELFPEYL 168 (230)
Q Consensus 157 ~~~~~~~~~~m~ 168 (230)
.++|.++..+..
T Consensus 264 ~~~A~~~~~~~~ 275 (280)
T PF13429_consen 264 KDEALRLRRQAL 275 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 456666655543
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.99 E-value=0.00047 Score=65.26 Aligned_cols=196 Identities=9% Similarity=-0.060 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
+|...+...... .|+... ..+...+. ..|++++|...|+++. .|+...+..+-..+.+.|++++|...|++..
T Consensus 494 eAi~a~~~Al~~--~Pd~~~~L~lA~al~--~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQR--QPDAWQHRAVAYQAY--QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHHHHH--HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 366444 34445556 8999999999998765 3444556666677888999999999999887
Q ss_pred hCCCCCCcc-cHHHHHHHhhhcCch--hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChh-hhH
Q 042210 80 KSDVRRDNY-TFPFLFKGFTRDIAG--SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDG-LHE 149 (230)
Q Consensus 80 ~~g~~p~~~-t~~~ll~~~~~~~~~--a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~-t~n 149 (230)
+.+ |+.. .+..+.....+.|+. |...+.... +...|..+-..+.+.|+.++|...|++..+ |+.. .++
T Consensus 570 ~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~ 647 (987)
T PRK09782 570 QRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA 647 (987)
T ss_pred hcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 654 4332 222223334445888 777777776 667788888999999999999999998876 6544 444
Q ss_pred HHHHHhh----hcchhhhHHHHHHHhhhcCchh-hhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 150 LIRIKAV----DDDLHELFPEYLVQMLALPDTF-MGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 150 ~li~~~~----~~~~~~~~~~m~~~~~~~p~~~-t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
.+-..+. .+++++.+++..+. .|+.. .+..+.. ++...|++++|+..++...+..
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l---~P~~~~a~~nLA~---------al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKG---LPDDPALIRQLAY---------VNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHhcC
Confidence 4433333 34566666655544 35422 2233222 6778899999998888776653
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.97 E-value=0.00047 Score=62.91 Aligned_cols=142 Identities=8% Similarity=0.050 Sum_probs=87.1
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCC-CcccHHHHHHH
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKN----GVLMYLDLLKSDVRR-DNYTFPFLFKG 96 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~----a~~~~~~M~~~g~~p-~~~t~~~ll~~ 96 (230)
+...+. +.|+.++|...++... ..+...+..+-..|.+.|++++ |...|++..+. .| +...+..+-..
T Consensus 218 l~~~l~--~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 293 (656)
T PRK15174 218 AVDTLC--AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 344555 6666666666666544 2234455556666666677664 56666665542 34 34466666777
Q ss_pred hhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH-----HHhhhcchhh
Q 042210 97 FTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR-----IKAVDDDLHE 162 (230)
Q Consensus 97 ~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li-----~~~~~~~~~~ 162 (230)
+.+.|++ |...++... +...+..+-..|.+.|++++|.+.|+.+.. |+...+.... .....++|.+
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777 666666655 566677777888888888888888887764 5544433221 1222356666
Q ss_pred hHHHHHHH
Q 042210 163 LFPEYLVQ 170 (230)
Q Consensus 163 ~~~~m~~~ 170 (230)
.+++..+.
T Consensus 374 ~l~~al~~ 381 (656)
T PRK15174 374 VFEHYIQA 381 (656)
T ss_pred HHHHHHHh
Confidence 66665544
No 33
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=7.6e-06 Score=44.00 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCEDD 144 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~~~ 144 (230)
++||++|.+|++.|+++.|.++|++|++.+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 689999999999999999999999998644
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.93 E-value=0.0011 Score=60.18 Aligned_cols=165 Identities=12% Similarity=0.019 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHhc-CCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLG-LLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g-~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
++|.+.|+...+.+ ..|+... ..+-..+. ..|++++|...|++.. .|+ ...|..+-..+...|++++|...|
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~--~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKC--LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35667777777665 3454433 44556666 8999999999999875 444 457888888889999999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-h
Q 042210 76 LDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-D 145 (230)
Q Consensus 76 ~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~ 145 (230)
++..+.. +-+...|..+-..+...|++ |...+.... +...+..+-..|.+.|++++|...|++..+ |+ .
T Consensus 389 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 389 DKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467 (615)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 9976642 22456788888889999999 888888776 677788888999999999999999998765 44 4
Q ss_pred hhhHHHHHHhhh----cchhhhHHHHHH
Q 042210 146 GLHELIRIKAVD----DDLHELFPEYLV 169 (230)
Q Consensus 146 ~t~n~li~~~~~----~~~~~~~~~m~~ 169 (230)
..|+.+-..+.. ++|.+.|++-..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 566665444443 455555555443
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.91 E-value=1.4e-05 Score=72.22 Aligned_cols=89 Identities=10% Similarity=-0.090 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChh
Q 042210 74 MYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~ 146 (230)
++..|+..|+.||.+||.++|.-||..|++ |-.+|..|. ...++++++.+....++.+.+. +|..-
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aD 84 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLAD 84 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------CCchh
Confidence 445555566666666666666666666666 333555555 4555555555555555555544 45555
Q ss_pred hhHHHHHHhhhcchhhhHHHHHH
Q 042210 147 LHELIRIKAVDDDLHELFPEYLV 169 (230)
Q Consensus 147 t~n~li~~~~~~~~~~~~~~m~~ 169 (230)
||+.++.+|+..+.+..|++..+
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veq 107 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQ 107 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHH
Confidence 56666666655555555554444
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=97.78 E-value=0.0014 Score=58.59 Aligned_cols=168 Identities=8% Similarity=-0.066 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
+|...++...+. .|+..- ..+-..+. ..|++++|...|++.. .|+ ...|..+-..+...|++++|...+++
T Consensus 322 ~A~~~~~~Al~l--dP~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 322 KAKEHAIKATEL--DHNNPQALGLLGLINT--IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344445444433 465443 44555667 8999999999999865 444 55677788889999999999999999
Q ss_pred HHhCCCCCCcc-cHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChh
Q 042210 78 LLKSDVRRDNY-TFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDG 146 (230)
Q Consensus 78 M~~~g~~p~~~-t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~ 146 (230)
..+.. |+.. .+..+...+...|+. |...+.... +...+..+-..|...|+.++|+..+.+... |+..
T Consensus 398 Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 398 CLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 76642 3322 223334445567777 766666553 455677778889999999999999998765 4433
Q ss_pred -hhHHHHHHhh--hcchhhhHHHHHHHhhhcCc
Q 042210 147 -LHELIRIKAV--DDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 147 -t~n~li~~~~--~~~~~~~~~~m~~~~~~~p~ 176 (230)
.++.+-..+. .+++...++++.+.....|+
T Consensus 476 ~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 476 IAVNLLYAEYCQNSERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhc
Confidence 3333333333 24677777777665544443
No 37
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.74 E-value=0.0001 Score=56.86 Aligned_cols=86 Identities=9% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCCcH-HHHHHHHhh---hccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhc----------------CChhHHHH
Q 042210 18 TKPHC-PKQTRYLLL---YEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRI----------------DSHKNGVL 73 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~---~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~----------------~~~~~a~~ 73 (230)
.+..+ ..+++.|.. .+.|+++-...-+..|. ..|+.+|+.||+.+-+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 34445 666666661 14567777777777776 78888899888888663 24456888
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 74 MYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
++++|+..|+-||..|+..|++.+++.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 888888888888888888888888887765
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.72 E-value=0.0022 Score=59.63 Aligned_cols=167 Identities=5% Similarity=-0.115 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHhcCC-CCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-----hhhHHHHHHHHHhcCChhHHH
Q 042210 2 HQLKQIHSQTIKLGLL-TKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-----VFLWNTMIKGYSRIDSHKNGV 72 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~-~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-----~~~yn~li~~~~~~~~~~~a~ 72 (230)
++|++.|+.+.+.+-. |+ .. ..+-..|. ..|++++|...|+++. .|. ...+..+..++...|++++|.
T Consensus 254 ~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl--~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPP-WAQRWVASAYL--KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHhhccCCCCCH-HHHHHHHHHHH--hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 4678888888777532 22 23 44566788 9999999999999875 222 234555666788999999999
Q ss_pred HHHHHHHhCC-----------CCCCc---ccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHH
Q 042210 73 LMYLDLLKSD-----------VRRDN---YTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 73 ~~~~~M~~~g-----------~~p~~---~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~ 131 (230)
.+++.+.... -.|+. ..+..+...+...|+. |.++++.+. +...+..+...+.+.|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 9999987642 12332 1344566788888998 888888877 8889999999999999999
Q ss_pred HHHHHHhhccC--CChhh-hHHHHHHh----hhcchhhhHHHHHHHh
Q 042210 132 MARGIFYMSCE--DDDGL-HELIRIKA----VDDDLHELFPEYLVQM 171 (230)
Q Consensus 132 ~A~~vf~~m~~--~~~~t-~n~li~~~----~~~~~~~~~~~m~~~~ 171 (230)
+|++.+++... ||... +-...... ..++|..+++++.+..
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999998876 66432 22222222 2345666666665543
No 39
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.66 E-value=0.0012 Score=56.15 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=91.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
..|+..+. ..++++.|.++|+++.+.+...+-.+...+...++-.+|.+++.+..+. .+-|......-.+.|.+.++
T Consensus 173 ~~Ll~~l~--~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLS--LTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHh--hcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 44555666 7789999999999998666666667888888888889999999887643 22233344444556778887
Q ss_pred h--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 103 G--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 103 ~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
. |..+.+... +-.+|..|...|.+.|++++|...++.++-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7 888888887 788999999999999999999999999874
No 40
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00027 Score=48.81 Aligned_cols=76 Identities=17% Similarity=0.358 Sum_probs=62.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCCCccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSVFLWNTMIKGYSRID--------SHKNGVLMYLDLLKSDVRRDNYT 89 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~~~--------~~~~a~~~~~~M~~~g~~p~~~t 89 (230)
..-|.-+. ..+++.....+|+.++ .|++.+||.++.+.+++. +..+.+.+|++|...+++|+..|
T Consensus 29 i~~I~~~~--~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 29 IDNINSCF--ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHH--hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34455566 6799999999998876 688999999999998853 35578899999999999999999
Q ss_pred HHHHHHHhhhc
Q 042210 90 FPFLFKGFTRD 100 (230)
Q Consensus 90 ~~~ll~~~~~~ 100 (230)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.65 E-value=0.00091 Score=58.58 Aligned_cols=203 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred ChhHHHHHHHHHHh-----c-CCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC-------CCC----hhhHHHHHHH
Q 042210 1 MHQLKQIHSQTIKL-----G-LLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT-------QPS----VFLWNTMIKG 61 (230)
Q Consensus 1 l~~a~~~~~~m~~~-----g-~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~~----~~~yn~li~~ 61 (230)
+++|..++++..+. | -.|.+.+ +.+-..|. ..+++++|..+|+++- -++ ..+++.|-..
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~--~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~l 292 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR--SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVL 292 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 46777777776555 3 2344444 55667788 9999999999998874 122 2467777778
Q ss_pred HHhcCChhHHHHHHHHHHh-----CCCC-CCcc-cHHHHHHHhhhcCch--hhHHHhhhh-------------hHhHHHH
Q 042210 62 YSRIDSHKNGVLMYLDLLK-----SDVR-RDNY-TFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFVQNA 119 (230)
Q Consensus 62 ~~~~~~~~~a~~~~~~M~~-----~g~~-p~~~-t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~~~~ 119 (230)
|.+.|++++|...+++-.+ .|.. |... -++.+...|+..+.+ +..++.... -.-+++.
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~n 372 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYAN 372 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 9999999999988877321 2322 2222 344555666666666 444444333 4577899
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC-------CCh----hhhHHHHHHhh----hcchhhhHHHHHHHhh-hcCc----hhh
Q 042210 120 LISTYCLCGEVDMARGIFYMSCE-------DDD----GLHELIRIKAV----DDDLHELFPEYLVQML-ALPD----TFM 179 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~-------~~~----~t~n~li~~~~----~~~~~~~~~~m~~~~~-~~p~----~~t 179 (230)
|=..|-+.|++++|+++|.+... ... ...|-|-..|- ..++.++|.+-..-+. +-|| .++
T Consensus 373 l~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 373 LAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 99999999999999999997764 111 12333322332 3467777777655442 3344 344
Q ss_pred hhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 180 GEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 180 ~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
+.. +.. .|.+.|++|.|.++.+.+.+
T Consensus 453 ~~n--L~~-------~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 453 YLN--LAA-------LYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHH--HHH-------HHHHcccHHHHHHHHHHHHH
Confidence 444 322 89999999999999888764
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.63 E-value=0.0014 Score=63.58 Aligned_cols=136 Identities=13% Similarity=-0.006 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.+++..+. .|+.. . ..+-..|. +.|++++|...+++.. .| +...+-.+-..+...++.++|...++
T Consensus 478 ~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~--~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 478 AQAAELQRQRLAL--DPGSVWLTYRLAQDLR--QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455666665544 35433 3 56667777 8888888888888763 23 22222222223444555555555555
Q ss_pred HHHhCC---------------------------------------CCCCcccHHHHHHHhhhcCch--hhHHHhhhh---
Q 042210 77 DLLKSD---------------------------------------VRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM--- 112 (230)
Q Consensus 77 ~M~~~g---------------------------------------~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~--- 112 (230)
.+.... .+++...+..+-..+.+.|+. |...++...
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~ 633 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE 633 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 432211 112223334444445555555 555554444
Q ss_pred --hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 113 --RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 113 --~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+...+..+...|...|+.++|.+.++...
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 45555555666666666666666666544
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=97.63 E-value=0.0029 Score=56.64 Aligned_cols=163 Identities=11% Similarity=-0.009 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCChh-hHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVF-LWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~-~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...+++..+.. |+... ..+-..+. ..|++++|...++... .|+.. .+..+...+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~--~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLF--MAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 46777787776664 66544 55667777 9999999999999976 45432 33344445666899999999999
Q ss_pred HHHhCCCCCCcc-cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----C
Q 042210 77 DLLKSDVRRDNY-TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE-----D 143 (230)
Q Consensus 77 ~M~~~g~~p~~~-t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-----~ 143 (230)
+..+.. .|+.. .+..+-.++...|+. |.+.+..+. +....+.+-..|.+.| ++|...++.+.+ +
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 976543 34333 355666777889998 888887766 4555666777778777 588887777654 4
Q ss_pred ChhhhHHHHHHhh-hcchhhhHHHHHHHh
Q 042210 144 DDGLHELIRIKAV-DDDLHELFPEYLVQM 171 (230)
Q Consensus 144 ~~~t~n~li~~~~-~~~~~~~~~~m~~~~ 171 (230)
+...+-.++.+.. ..+...+++++.+++
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMWNKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHHHHhhccc
Confidence 4455566665554 456666677777666
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.60 E-value=0.0036 Score=58.25 Aligned_cols=135 Identities=7% Similarity=-0.043 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+++..... ..|... . ..+-..+. +.|++++|..+|++.. +.+...+..+...+...|++++|...++
T Consensus 32 ~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 32 AEVITVYNRYRV--HMQLPARGYAAVAVAYR--NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred HHHHHHHHHHHh--hCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456666766655 234443 3 66667777 8999999999999853 4445667788888888999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+..+. .|+...+..+-..+...|+. |...++... +...+..+...+.+.|..++|.+.++....
T Consensus 108 ~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 108 QLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 87665 33322277777788888888 777777776 666667778888888999999988887665
No 45
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.53 E-value=0.00096 Score=57.17 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCCcH-HHHHHHHhhhccCChHHHHHHHHhcC-CCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH
Q 042210 18 TKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT-QPS-----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-~~~-----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~ 90 (230)
.+... ..+++.+. ..-+++.+..++...+ .|+ ..|.+++|..|...|..+.++.+++.=...|+=||..||
T Consensus 64 vS~~dld~fvn~~~--~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFVNNVE--SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CcHHHHHHHHhhcC--CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34444 77778777 7778888999888876 332 235679999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhc
Q 042210 91 PFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLC 127 (230)
Q Consensus 91 ~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~ 127 (230)
+.||+.+.+.|++ |.++...|. +..|+..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999 777777777 666666666666555
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.48 E-value=0.008 Score=57.18 Aligned_cols=134 Identities=7% Similarity=-0.096 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQ--PSV-FLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~--~~~-~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+|...++.+... .|+... ..+...+. +.|++++|...++.... |+. ..+..+.....+.|++++|...|++-
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all--~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQ--AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455555554322 333333 44555666 77888888888777652 221 12222222333347888888887775
Q ss_pred HhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 79 LKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 79 ~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+. .|+...|..+-..+.+.|+. |...+.... +...++.+-..+...|+.++|...|++..+
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 542 35556677777777777777 666666665 666677777777777788887777776654
No 47
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0012 Score=56.53 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=72.1
Q ss_pred CcH-HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 042210 20 PHC-PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLF 94 (230)
Q Consensus 20 ~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll 94 (230)
..+ .++++.|. +.|..+.+..+++.=. -||..+||.||+.+.+.|++..|.++..+|...+...+..|+...+
T Consensus 103 ~~t~ha~vR~~l--~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 103 PSTHHALVRQCL--ELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred CccHHHHHHHHH--hcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 446 99999999 9999999999997754 6999999999999999999999999999998888888889999999
Q ss_pred HHhhhc
Q 042210 95 KGFTRD 100 (230)
Q Consensus 95 ~~~~~~ 100 (230)
.+|.+.
T Consensus 181 ~~~~~~ 186 (429)
T PF10037_consen 181 YSCYKY 186 (429)
T ss_pred HHHHHh
Confidence 999887
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0024 Score=56.41 Aligned_cols=199 Identities=9% Similarity=0.008 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--C------------------------------
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--Q------------------------------ 49 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~------------------------------ 49 (230)
+|..+|+.. .....-+..+ ..+=.+|. ..++.++|+++|+..+ .
T Consensus 337 ~A~~~~~kl-p~h~~nt~wvl~q~GrayF--El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 337 EALNLFEKL-PSHHYNTGWVLSQLGRAYF--ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHhh-HHhcCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 455566552 2222223345 77778888 8889999999997764 1
Q ss_pred ----C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------------------------------CCCCCcccHHHHH
Q 042210 50 ----P-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS------------------------------DVRRDNYTFPFLF 94 (230)
Q Consensus 50 ----~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~------------------------------g~~p~~~t~~~ll 94 (230)
| ...+|.++=++|+--++.+.|++.|++-.+- .+..|...|+++.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 1 3457888888888889999999998875532 2223333333321
Q ss_pred H---HhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhh-h---HHHHHHhhh
Q 042210 95 K---GFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGL-H---ELIRIKAVD 157 (230)
Q Consensus 95 ~---~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t-~---n~li~~~~~ 157 (230)
- .|.+.++. |+--|.... +.+.-..+-..|-++|+.|+|.+++++-.. .|+.+ | ..+......
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 1 23333333 333333333 555555555666677777777777776543 23322 2 223444556
Q ss_pred cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccccccc
Q 042210 158 DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 158 ~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
++|+..+++++. +.|+..+...|..- .|-+.|+.+.|..=|..+...
T Consensus 574 ~eal~~LEeLk~---~vP~es~v~~llgk--------i~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 574 VEALQELEELKE---LVPQESSVFALLGK--------IYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHH---hCcchHHHHHHHHH--------HHHHHccchHHHHhhHHHhcC
Confidence 778888887655 45776665553222 566778887777666655554
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.41 E-value=0.0054 Score=59.70 Aligned_cols=114 Identities=9% Similarity=-0.006 Sum_probs=83.7
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccHHHH---------
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV-RRDNYTFPFL--------- 93 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~-~p~~~t~~~l--------- 93 (230)
..+. ..|++++|...|++.. .| |...+..+-..|.+.|++++|...|++..+..= .++...|..+
T Consensus 277 ~~~~--~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAV--DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4455 8899999999998865 34 667788888899999999999999998765321 1121122222
Q ss_pred ---HHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 94 ---FKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 94 ---l~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-..+.+.|++ |...+.... +...+..+-..|...|++++|.+.|++..+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345677787 888888776 666777788899999999999999988765
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.40 E-value=0.028 Score=48.19 Aligned_cols=164 Identities=13% Similarity=-0.030 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhcCCCCCcHH--------HHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHCP--------KQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKN 70 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~~--------~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~ 70 (230)
++|..++..+.+.+..++.... .++..-. +..+.+...++|+..+ +.+....-.+...+...|+.++
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~--~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM--ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 4577788888888765433212 2233333 4556778888888886 4567788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-
Q 042210 71 GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE- 142 (230)
Q Consensus 71 a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~- 142 (230)
|..++++-.+. .||. --.++.+....++. +.+..+... |...+.++=..+.+.|++++|++.|+...+
T Consensus 282 A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 282 AQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999887663 4443 22345555555776 444444443 888889999999999999999999998875
Q ss_pred -CChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 143 -DDDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 143 -~~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
|+..+|-.+-..+...+..+...++.+++
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887777766655555556666665
No 51
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.38 E-value=0.00041 Score=56.79 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=106.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH-HHHHHHhhhcC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF-PFLFKGFTRDI 101 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~-~~ll~~~~~~~ 101 (230)
.-+.+++. ..|+.+.+..-...-..|.......+-..+...++-+.+..-+++....+..++..++ ...-..+...|
T Consensus 39 ~~~~Rs~i--Alg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 39 FYQYRSYI--ALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHH--HTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHH--HcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 34557777 8888776555544444666655544443333334444455544444333333222222 22223455567
Q ss_pred ch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhH------HHHHHh-hhcchhhhHHHHHHH
Q 042210 102 AG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHE------LIRIKA-VDDDLHELFPEYLVQ 170 (230)
Q Consensus 102 ~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n------~li~~~-~~~~~~~~~~~m~~~ 170 (230)
++ |.++...-.+.......|..|.+.+++|.|.+.++.|++ .|....+ .+..|. ...+|+-.|+++.+.
T Consensus 117 ~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 117 DYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp HHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 77 666666656777888889999999999999999999987 4544322 222222 246899999997655
Q ss_pred hhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 171 MLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 171 ~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
- .++..+.+++.+ ++...|++++|+.++....+..
T Consensus 197 ~--~~t~~~lng~A~---------~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 197 F--GSTPKLLNGLAV---------CHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp S----SHHHHHHHHH---------HHHHCT-HHHHHHHHHHHCCC-
T ss_pred c--CCCHHHHHHHHH---------HHHHhCCHHHHHHHHHHHHHhc
Confidence 3 355556666444 6778899999999887766543
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.37 E-value=0.023 Score=53.08 Aligned_cols=142 Identities=7% Similarity=-0.057 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCC---------CChhhHHHHHHHHHhcCChhHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQ---------PSVFLWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~yn~li~~~~~~~~~~~a 71 (230)
..+.+.++.+...|.+....+ -.+-++|. ..+++++|..++...-. ++......|.-+|...+++++|
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl--~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYI--DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHH--hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 467788888888887766668 99999999 99999999999998742 1233357889999999999999
Q ss_pred HHHHHHHHhCCC-----------CC--Cccc-HHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCH
Q 042210 72 VLMYLDLLKSDV-----------RR--DNYT-FPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEV 130 (230)
Q Consensus 72 ~~~~~~M~~~g~-----------~p--~~~t-~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~ 130 (230)
..+++.+.+..- .| |... +..+...+.-.|+. |++.++.+. |..+...+-+.+..-|.+
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 999999987210 12 2222 23456777888998 999999888 999999999999999999
Q ss_pred HHHHHHHhhccC--CCh
Q 042210 131 DMARGIFYMSCE--DDD 145 (230)
Q Consensus 131 ~~A~~vf~~m~~--~~~ 145 (230)
..|+..++.... |+.
T Consensus 467 ~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 467 RKAEQELKAVESLAPRS 483 (822)
T ss_pred HHHHHHHHHHhhhCCcc
Confidence 999999976553 554
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.31 E-value=0.0038 Score=51.16 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=82.0
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh----cCch--hhH
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~----~~~~--a~~ 106 (230)
..|++++|.++++.- .+.......+..|.+.++++.|.+.++.|++.+ .| .+..-+..++.. ...+ |..
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHH
Confidence 889999999998876 455666778899999999999999999998753 33 355555555443 2245 999
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+|+++. ++.+.|.+..++...|++++|.+++.+.-+
T Consensus 189 ~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 189 IFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999987 778888888899999999999999998765
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0066 Score=49.65 Aligned_cols=203 Identities=12% Similarity=0.136 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC-CCChhh------HHHHHHHHHhcCChhHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT-QPSVFL------WNTMIKGYSRIDSHKNGV 72 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~-~~~~~~------yn~li~~~~~~~~~~~a~ 72 (230)
++|..+|-+|.+. .|.++- -+|=+.|- +.|.+|+|..+...+. .||... ---|-.-|-..|-++.|.
T Consensus 52 dKAvdlF~e~l~~--d~~t~e~~ltLGnLfR--sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 52 DKAVDLFLEMLQE--DPETFEAHLTLGNLFR--SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred chHHHHHHHHHhc--CchhhHHHHHHHHHHH--hcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678888888773 344433 34446666 8889999999988866 666432 223444556678899999
Q ss_pred HHHHHHHhCC-CCCCcccHHHHHHHhhhcCch--hhHHHhhhh--hHhHHHH--------HHHHHHhcCCHHHHHHHHhh
Q 042210 73 LMYLDLLKSD-VRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM--RVFVQNA--------LISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 73 ~~~~~M~~~g-~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~--~~~~~~~--------li~~y~~~g~~~~A~~vf~~ 139 (230)
.+|..+...| +.++ ..--|+..|-...+| |..+-..+. +.-.|+. |-..+.-..+++.|+.++.+
T Consensus 128 ~~f~~L~de~efa~~--AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEGEFAEG--ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcchhhhHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999887754 4444 356688888888888 655555444 2333333 33334456678888888887
Q ss_pred ccC--CChhhhHHHHHH-----hhhcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 140 SCE--DDDGLHELIRIK-----AVDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 140 m~~--~~~~t~n~li~~-----~~~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
--+ |..+--++++.- +...+|.+.++...++. |+ +....+..+ .++|.+.|..+++...+.++
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~-yl~evl~~L------~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN---PE-YLSEVLEML------YECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC---hH-HHHHHHHHH------HHHHHHhCCHHHHHHHHHHH
Confidence 654 555555555432 22346777777776655 32 222222222 23899999999998888877
Q ss_pred cccCCCcc
Q 042210 213 HEHSQDDM 220 (230)
Q Consensus 213 ~~~~~~~~ 220 (230)
.+....++
T Consensus 276 ~~~~~g~~ 283 (389)
T COG2956 276 METNTGAD 283 (389)
T ss_pred HHccCCcc
Confidence 77654444
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.07 E-value=0.025 Score=52.92 Aligned_cols=132 Identities=10% Similarity=-0.037 Sum_probs=99.1
Q ss_pred ccCChHHHHHHHHhcC--CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH---HHHhhhcCch--
Q 042210 33 EKGDLKYECKVFRKIT--QPSV--FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL---FKGFTRDIAG-- 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~--~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~l---l~~~~~~~~~-- 103 (230)
+.|+++.|...|++.. .|+. ..+ .++..+...|+.++|...+++-. .|+...+..+ ...+...|++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999887 4553 244 88888889999999999998876 4544434333 3467777888
Q ss_pred hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHHHhhh------cchhhhHHHHHHH
Q 042210 104 SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRIKAVD------DDLHELFPEYLVQ 170 (230)
Q Consensus 104 a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~~~------~~~~~~~~~m~~~ 170 (230)
|.++++.+. +...+..++..|...++.++|.+.+++... |+...+ +..++.. .++++.++++.+.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY--MTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--HHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999888 677788889999999999999999999876 554444 3223322 2577777777776
Q ss_pred h
Q 042210 171 M 171 (230)
Q Consensus 171 ~ 171 (230)
.
T Consensus 199 ~ 199 (822)
T PRK14574 199 A 199 (822)
T ss_pred C
Confidence 5
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.0038 Score=55.18 Aligned_cols=174 Identities=9% Similarity=-0.037 Sum_probs=120.6
Q ss_pred ChHHHHHHHHhcC--CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCC-C-CCCcccHHHHHHHhhhcCch---hhHH
Q 042210 36 DLKYECKVFRKIT--QPSVF-LWNTMIKGYSRIDSHKNGVLMYLDLLKSD-V-RRDNYTFPFLFKGFTRDIAG---SLEK 107 (230)
Q Consensus 36 ~~~~a~~~~~~m~--~~~~~-~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~-~p~~~t~~~ll~~~~~~~~~---a~~~ 107 (230)
+..+|...|...+ .+|+. +-.-+=.+|-..+++++|.++|+..++.. . .-+...|++.+--+-+.-.+ +..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4667888888765 45554 12233456777899999999999987742 2 24677899999888776555 7777
Q ss_pred Hhhhh-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhhcchhhhHHHHHHHhhhcCchhhhhhh
Q 042210 108 SCIVM-RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGL 183 (230)
Q Consensus 108 ~~~~~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~t~~~l 183 (230)
.+..+ .+.+|.++=+.|+--++.+.|.+-|++-.+ | ...+|+.+-.=+...+.++....-++.. +..|...|++
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-l~~~~rhYnA- 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-LGVDPRHYNA- 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh-hcCCchhhHH-
Confidence 77777 899999999999999999999999998877 3 4566665533333344445555555555 5555555665
Q ss_pred hhcccccCCcccccccCCccCCccccccccccC
Q 042210 184 EVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 184 ~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
++..- ..|-+.+.+|.|+--|+.+.+-+
T Consensus 492 -wYGlG----~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 492 -WYGLG----TVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred -HHhhh----hheeccchhhHHHHHHHhhhcCC
Confidence 22211 15668888888887777666654
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.96 E-value=0.043 Score=45.12 Aligned_cols=175 Identities=8% Similarity=-0.085 Sum_probs=109.8
Q ss_pred HHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhhcCc
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTRDIA 102 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~~~~ 102 (230)
..|. +.|+.++|...|++.. +.+...|+.+=..+...|++++|...|+...+ +.|+ ..+|..+-.++...|+
T Consensus 72 ~~~~--~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 72 VLYD--SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHH--HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCC
Confidence 4556 8899999999998865 44567899998999999999999999998765 3453 4466666677778888
Q ss_pred h--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhhc-chhhhHHHHHHHh
Q 042210 103 G--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVDD-DLHELFPEYLVQM 171 (230)
Q Consensus 103 ~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~~-~~~~~~~~m~~~~ 171 (230)
. |.+.++... +.. .......+...++.++|...|++... |+...|. +...+..+ ...+.+..+.+..
T Consensus 148 ~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWN-IVEFYLGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHH-HHHHHccCCCHHHHHHHHHhcC
Confidence 8 777777665 321 12222234456789999999965433 3333332 22211111 1123444444322
Q ss_pred h----hcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 172 L----ALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 172 ~----~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
. ..|+ ...|..+.. .+.+.|+.++|...+....+.+
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~---------~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 226 TDNTELAERLCETYFYLAK---------YYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcHHHHHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHHhC
Confidence 1 1111 112333223 6778999999999999888765
No 58
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.86 E-value=0.028 Score=41.02 Aligned_cols=93 Identities=10% Similarity=-0.099 Sum_probs=59.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCC
Q 042210 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGE 129 (230)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~ 129 (230)
..-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++ |...++... +...+..+-..|.+.|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555666666666666654332 11444555555566666666 555555555 67778888888889999
Q ss_pred HHHHHHHHhhccC--CChhhhHH
Q 042210 130 VDMARGIFYMSCE--DDDGLHEL 150 (230)
Q Consensus 130 ~~~A~~vf~~m~~--~~~~t~n~ 150 (230)
.++|...|+.-.+ |+..-|..
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999988754 65554443
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.83 E-value=0.25 Score=42.53 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHH---hh--hccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYL---LL--YEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGV 72 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~---~~--~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~ 72 (230)
+.|.+++..+.+.+..++... ..-...+ .. ......+...+.++..+ +.+...+-.+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 456788888888875544322 2222222 10 02223445556666665 247788889999999999999999
Q ss_pred HHHHHHHhCCCCCCcccH-HHHHHHhhh--cCch--hhHHHhhhh-----hH--hHHHHHHHHHHhcCCHHHHHHHHh--
Q 042210 73 LMYLDLLKSDVRRDNYTF-PFLFKGFTR--DIAG--SLEKSCIVM-----RV--FVQNALISTYCLCGEVDMARGIFY-- 138 (230)
Q Consensus 73 ~~~~~M~~~g~~p~~~t~-~~ll~~~~~--~~~~--a~~~~~~~~-----~~--~~~~~li~~y~~~g~~~~A~~vf~-- 138 (230)
.++++..+.. ||.... -.++..+.. .++. +.+.++... |. ....++=..+.+.|++++|++.|+
T Consensus 284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 9999976642 333211 013333333 3444 444443333 66 677788889999999999999999
Q ss_pred hcc--CCChhhhHHHHHHhhh----cchhhhHHH
Q 042210 139 MSC--EDDDGLHELIRIKAVD----DDLHELFPE 166 (230)
Q Consensus 139 ~m~--~~~~~t~n~li~~~~~----~~~~~~~~~ 166 (230)
... .||...+..+...+.. +++.+.+++
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 342 4888887777655554 345455544
No 60
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.77 E-value=0.024 Score=46.24 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=19.1
Q ss_pred hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 104 SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 104 a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
|..||+... +...|...|+.+.+.++.+.|+.||++...
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 444444443 445555555555555555555555555443
No 61
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.69 E-value=0.02 Score=54.96 Aligned_cols=120 Identities=8% Similarity=0.032 Sum_probs=76.8
Q ss_pred CCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042210 17 LTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--------QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86 (230)
Q Consensus 17 ~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--------~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 86 (230)
.|+..+ -..|.... ..+++++|++++++.. +--.-.|-++++.-..-|.-+...++|++..+.- .|
T Consensus 1454 sPNSSi~WI~YMaf~L--elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHL--ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA- 1529 (1710)
T ss_pred CCCcchHHHHHHHHHh--hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch-
Confidence 365554 66677777 8888888888888754 1123356666666666666666777777765531 11
Q ss_pred cccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 042210 87 NYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMS 140 (230)
Q Consensus 87 ~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m 140 (230)
...|..|...|.+.+.. |.++++.|. ...+|....+.+.+..+-+.|+.++.+-
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 23566677777777666 777777776 5666666666666666666666666544
No 62
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.67 E-value=0.12 Score=44.55 Aligned_cols=131 Identities=12% Similarity=0.058 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
.|++.++.+++. .|+... ......+. +.++.++|.+.++.+. .|+ ...+-.+-.+|.+.|++.+|...+++
T Consensus 324 ~A~~~l~~L~~~--~P~N~~~~~~~~~i~~--~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 324 EALKLLQPLIAA--QPDNPYYLELAGDILL--EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred hHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 344444444333 344333 44556666 6666666666666654 344 33444455556666666666666666
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhh
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLH 148 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~ 148 (230)
-... .+-|...|..|-.+|...|+. ...--+.-.+|...|+++.|......-.+ ++..+|
T Consensus 400 ~~~~-~p~dp~~w~~LAqay~~~g~~----------~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 400 YLFN-DPEDPNGWDLLAQAYAELGNR----------AEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred Hhhc-CCCCchHHHHHHHHHHHhCch----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 4332 233445566666666666664 12222223455666666666666555443 444444
No 63
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.66 E-value=0.072 Score=51.41 Aligned_cols=167 Identities=12% Similarity=0.093 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHh-cCCC---CCcH-HHHHHHHhhhccCChHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCChhHHHH
Q 042210 1 MHQLKQIHSQTIKL-GLLT---KPHC-PKQTRYLLLYEKGDLKYECKVFRKITQ-PS-VFLWNTMIKGYSRIDSHKNGVL 73 (230)
Q Consensus 1 l~~a~~~~~~m~~~-g~~~---~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~-~~-~~~yn~li~~~~~~~~~~~a~~ 73 (230)
+++|++++++..+. ++.- -... .++++.-. -.|.-+...++|+...+ .| ...|-.|..-|.+....++|-+
T Consensus 1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn--~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLEN--AYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH--hhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHH
Confidence 46788888877554 2221 1223 56666666 66777888899988763 23 4578999999999999999999
Q ss_pred HHHHHHhC-CCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-
Q 042210 74 MYLDLLKS-DVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE- 142 (230)
Q Consensus 74 ~~~~M~~~-g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~- 142 (230)
+|+.|.+. | -....|......+.+.++- |+.++.... .+.........-.++|+.+.++.+|+..-.
T Consensus 1552 ll~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1552 LLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 99999764 4 4456788889988888875 666666655 566667777777899999999999998875
Q ss_pred --CChhhhHHHHHHhhhcc----hhhhHHHHHHHh
Q 042210 143 --DDDGLHELIRIKAVDDD----LHELFPEYLVQM 171 (230)
Q Consensus 143 --~~~~t~n~li~~~~~~~----~~~~~~~m~~~~ 171 (230)
+-.-.|+..|..-...+ .-++|++...-.
T Consensus 1630 yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1630 YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 34567999988776644 444555544443
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.63 E-value=0.19 Score=42.23 Aligned_cols=183 Identities=15% Similarity=0.070 Sum_probs=123.3
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------cccHHHHH
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-------NYTFPFLF 94 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-------~~t~~~ll 94 (230)
.-.... ..|+.+.|..-.++.. ..+...-.....+|.+.|++.....+...|.+.|+--| ..+|..++
T Consensus 159 rarlll--~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 159 RARLLL--NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHH--hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 334555 6777777777766644 56777889999999999999999999999999886433 34677777
Q ss_pred HHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC----CC-------------------
Q 042210 95 KGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE----DD------------------- 144 (230)
Q Consensus 95 ~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~----~~------------------- 144 (230)
+=+...+.. -...|+... ++..-.+++.-+.++|+.++|.++..+--+ |+
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred HHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHH
Confidence 776666655 456677776 788999999999999999999987664432 11
Q ss_pred ----------hh-hhHHHHHHhhhcchhhhHHHHHHHh-hhcCchhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 145 ----------DG-LHELIRIKAVDDDLHELFPEYLVQM-LALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 145 ----------~~-t~n~li~~~~~~~~~~~~~~m~~~~-~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
.. .+.++-.-|..++-+.-.++.++.. ...|+..++..+.- ++.+.|+.++|.++.++.
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~---------~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELAD---------ALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHH---------HHHHcCChHHHHHHHHHH
Confidence 11 1222222223333333333333322 14677888877433 788999999998887766
Q ss_pred cccCCC
Q 042210 213 HEHSQD 218 (230)
Q Consensus 213 ~~~~~~ 218 (230)
...-.+
T Consensus 388 L~~~~~ 393 (400)
T COG3071 388 LLLTRQ 393 (400)
T ss_pred HHHhcC
Confidence 543333
No 65
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.59 E-value=0.018 Score=47.02 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=88.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhh-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFL-----WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~-----yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
..++...- +.+.++.|+.+|....+.+..+ ..++|. |...++.+.|..+|+...+. +.-+..-|..-++-+
T Consensus 5 i~~m~~~~--r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 5 IQYMRFMR--RTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHH--HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56677777 8888999999999887433333 334432 22246777799999996543 444555677778888
Q ss_pred hhcCch--hhHHHhhhh--------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHH
Q 042210 98 TRDIAG--SLEKSCIVM--------RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRI 153 (230)
Q Consensus 98 ~~~~~~--a~~~~~~~~--------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~ 153 (230)
.+.++. ++.+|+... ...+|...|+.=.+.|+++.+.+|..++.+ |+..+...++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888988 999999887 246899999999999999999999998876 55444444443
No 66
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.59 E-value=0.018 Score=39.92 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHhhhc
Q 042210 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDV-RRDNYTFPFLFKGFTRD 100 (230)
Q Consensus 56 n~li~~~~~~~~~~~a~~~~~~M~~~g~-~p~~~t~~~ll~~~~~~ 100 (230)
-..|..+...+++.....+|+.+++.|+ .|+..+|+.++++-++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 4566677777999999999999999999 89999999999988775
No 67
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.46 E-value=0.097 Score=40.38 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=64.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHh-hhcCc--h--hhHHHhhhh-----hHhHH
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGF-TRDIA--G--SLEKSCIVM-----RVFVQ 117 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~-~~~~~--~--a~~~~~~~~-----~~~~~ 117 (230)
..|...|..+-..|...|++++|...|++-.+.. | +...+..+-.++ ...|+ . +.++++... +...+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 3456678888888888888888888888765532 4 333444444443 45555 2 777777776 77778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 118 NALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 118 ~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
..+-..+.+.|++++|...|+++.+
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888888888888888888765
No 68
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.44 E-value=0.033 Score=43.26 Aligned_cols=108 Identities=8% Similarity=-0.026 Sum_probs=73.3
Q ss_pred hHHHHHHHHhc--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHH
Q 042210 37 LKYECKVFRKI--TQPSVFLWNTMIKGYSRI-----DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKS 108 (230)
Q Consensus 37 ~~~a~~~~~~m--~~~~~~~yn~li~~~~~~-----~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~ 108 (230)
+..-...|+.. ...|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+-+ |.+ -..++
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~f 108 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFF 108 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHH
Confidence 44455667776 478888999999999764 6666677778899999999999999999999987 544 33333
Q ss_pred hhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhhhHHHHHHhh
Q 042210 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE----DDDGLHELIRIKAV 156 (230)
Q Consensus 109 ~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~----~~~~t~n~li~~~~ 156 (230)
..+.. -| -.+-+-|.+|+++|.. ||..|+..++..+.
T Consensus 109 Q~~F~---------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 109 QAEFM---------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHhc---------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 33320 00 1223445566666664 66666666666554
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.43 E-value=0.06 Score=47.46 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhc-CCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC-------CCC----hhhHHHHHHHHHhcCCh
Q 042210 3 QLKQIHSQTIKLG-LLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT-------QPS----VFLWNTMIKGYSRIDSH 68 (230)
Q Consensus 3 ~a~~~~~~m~~~g-~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~~----~~~yn~li~~~~~~~~~ 68 (230)
.|..|.+. ..| ..|.+.. +.+...++ ..++++.|..++.... .++ ..+|+-|=..|-..|++
T Consensus 308 ~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~--~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 308 RALEIYEK--LLGASHPEVAAQLSELAAILQ--SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHHH--hhccChHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 44555554 223 2344444 66777788 8889999888887542 222 24688898999999999
Q ss_pred hHHHHHHHHHHhC-----C-CCC-CcccHHHHHHHhhhcCch--hhHHHhhhh------------hHhHHHHHHHHHHhc
Q 042210 69 KNGVLMYLDLLKS-----D-VRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM------------RVFVQNALISTYCLC 127 (230)
Q Consensus 69 ~~a~~~~~~M~~~-----g-~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~------------~~~~~~~li~~y~~~ 127 (230)
.+|.++|+.-... | ..+ ....++-|-..|.+.++. +.++|.... ...+|..|...|.+.
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999885431 1 223 244566677777777776 666666655 577888899999999
Q ss_pred CCHHHHHHHHhhcc
Q 042210 128 GEVDMARGIFYMSC 141 (230)
Q Consensus 128 g~~~~A~~vf~~m~ 141 (230)
|++++|.++-+...
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988877554
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.32 Score=38.69 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=51.4
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEK 107 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~ 107 (230)
-.|+-+....+..... ..|...-+.......+.|++..|...|.+-.. .-+||..+|+.+=-+|.+.|+. |+.-
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~a 156 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLGRFDEARRA 156 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHccChhHHHHH
Confidence 3344444444433322 23333444455555555555555555554322 2334555555555555555555 4444
Q ss_pred Hhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 042210 108 SCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMS 140 (230)
Q Consensus 108 ~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m 140 (230)
|.+.. +....|.|--.|.-.|+.+.|+.++.+-
T Consensus 157 y~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 157 YRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 44443 4444555544455555555555555543
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.19 E-value=0.059 Score=34.37 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhc
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMS 140 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m 140 (230)
.++..+...+...|+.++|...|...
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445555566666666666666544
No 72
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.18 E-value=0.094 Score=46.82 Aligned_cols=188 Identities=13% Similarity=0.047 Sum_probs=109.8
Q ss_pred cCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcc
Q 042210 15 GLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNY 88 (230)
Q Consensus 15 g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~~ 88 (230)
...|+..+ ..+-..|- ..|++|.|...++... +|+ ...||-|-.++-..|++.+|...|+.-.... -.||
T Consensus 280 ~lrpn~A~a~gNla~iYy--eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had-- 355 (966)
T KOG4626|consen 280 NLRPNHAVAHGNLACIYY--EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD-- 355 (966)
T ss_pred hcCCcchhhccceEEEEe--ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH--
Confidence 34455433 44444455 7777777777777654 444 3467777777777788888887777654432 2223
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh-hhhHHHHHHhhh-
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDD-GLHELIRIKAVD- 157 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~-~t~n~li~~~~~- 157 (230)
+.+.|-+.+...|.+ |..++.... -....|.|-..|-..|++++|..-+.+-.+ |+. -+|+.|-..|..
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 456677777777777 666666555 345567777778788888888777776654 443 244444443433
Q ss_pred ---cchhhhHHHHHHHhhhcCchh-hhhhhhhcccccCCcccccccCCccCCccccccccccCCCcc
Q 042210 158 ---DDLHELFPEYLVQMLALPDTF-MGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDM 220 (230)
Q Consensus 158 ---~~~~~~~~~m~~~~~~~p~~~-t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~ 220 (230)
.+|+..+.+-. .+.|.-. ..+-|.. .|-++|++.+|.+-++...+. +||
T Consensus 436 g~v~~A~q~y~rAI---~~nPt~AeAhsNLas---------i~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAI---QINPTFAEAHSNLAS---------IYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred hhHHHHHHHHHHHH---hcCcHHHHHHhhHHH---------HhhccCCcHHHHHHHHHHHcc--CCC
Confidence 23333333222 1334311 1222212 566888888888877765543 454
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.14 E-value=0.081 Score=37.57 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=48.4
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcC
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~ 101 (230)
+...+. +.|+.++|.+.|+... +.+...|..+-..+.+.|++++|...|+.....+ |+
T Consensus 23 ~a~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~--------------- 83 (135)
T TIGR02552 23 LAYNLY--QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PD--------------- 83 (135)
T ss_pred HHHHHH--HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC---------------
Confidence 334444 5566666666655543 2234455555555555556666665555543321 21
Q ss_pred chhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...+..+-..|...|+.++|.+.|+...+
T Consensus 84 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 84 -----------DPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred -----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455567777888888877776654
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.09 E-value=0.63 Score=38.21 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
+|...|++..+. .|+... +.+-..+. ..|++++|.+.|+... .| +...|..+-..+...|++++|.+.|+.
T Consensus 82 ~A~~~~~~Al~l--~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 82 LARNDFSQALAL--RPDMADAYNYLGIYLT--QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455556555543 565444 66777888 9999999999999875 44 356777777788889999999999998
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh---hHhHHHHHHHHHHhcCCHHHHHHHHhhccC----------
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM---RVFVQNALISTYCLCGEVDMARGIFYMSCE---------- 142 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~---~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---------- 142 (230)
-.+. .|+..........+...++. |...+.... +...|.. --.+...|+.+++ +.|..+.+
T Consensus 158 al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~ 233 (296)
T PRK11189 158 FYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAE 233 (296)
T ss_pred HHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHH
Confidence 6653 34432222222233344555 666664433 2233321 2222335665544 24443331
Q ss_pred CChhhhHHHHHHhhh----cchhhhHHHHHHH
Q 042210 143 DDDGLHELIRIKAVD----DDLHELFPEYLVQ 170 (230)
Q Consensus 143 ~~~~t~n~li~~~~~----~~~~~~~~~m~~~ 170 (230)
+...+|..+-..+.. ++|...|++....
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 122345555444443 4666666665543
No 75
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.02 E-value=0.45 Score=39.60 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=90.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
+..|..+. ..|+...|.++-.+.+-||-..|-.-|.+++..++|++-..+-.. + - .+.-|-..+.+|.+.|+
T Consensus 181 ~~Ti~~li--~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k---K--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLI--EMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-K---K--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C---C--CCCChHHHHHHHHHCCC
Confidence 66678888 999999999999999999999999999999999999977665432 1 1 23668889999999998
Q ss_pred h--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHH
Q 042210 103 G--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRI 153 (230)
Q Consensus 103 ~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~ 153 (230)
. |...... ..+.--+..|.++|++.+|.+.--+.+ |.....-+..
T Consensus 253 ~~eA~~yI~k----~~~~~rv~~y~~~~~~~~A~~~A~~~k--d~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPK----IPDEERVEMYLKCGDYKEAAQEAFKEK--DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHh----CChHHHHHHHHHCCCHHHHHHHHHHcC--CHHHHHHHHH
Confidence 7 6655554 444667899999999999988755543 4444444433
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.19 Score=43.25 Aligned_cols=137 Identities=9% Similarity=0.098 Sum_probs=82.4
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
+.|++++|.+.|-++. .-+..+.--+-+-|-...++..|.+++ |+...+.| |....+-|-..|-+.|+- |.+
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~--~q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL--MQANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH--HHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 5566666666665543 222222222333444445555666555 33334444 566677777777777776 655
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhc--cCCChhhhHHHHHHhhh-----cchhhhHHHHHHHh
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMS--CEDDDGLHELIRIKAVD-----DDLHELFPEYLVQM 171 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m--~~~~~~t~n~li~~~~~-----~~~~~~~~~m~~~~ 171 (230)
.|-+-- ++.+.-=|-.-|....-+++|...|++- .+|+..-|-.||..|.+ .+++++++...+.-
T Consensus 614 ~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 554433 5666555666677777778888888854 35888888888876653 36777777665543
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.082 Score=44.08 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
-|++.|+..=.++.+-|+.. .++-+.+. -.-+++++.-.++.++ .-|.+.|| +-.+++..|+..+|.++|-
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fF--L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFF--LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHh
Confidence 46677776666777777776 56666666 5567777777777766 45666666 4568888899999999997
Q ss_pred HHHhCCCCCCcccHHHH-HHHhhhcCch--hhHHHhhhh---hHhHHHHHH-HHHHhcCCHHHHHHHHhhccC--CChhh
Q 042210 77 DLLKSDVRRDNYTFPFL-FKGFTRDIAG--SLEKSCIVM---RVFVQNALI-STYCLCGEVDMARGIFYMSCE--DDDGL 147 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~l-l~~~~~~~~~--a~~~~~~~~---~~~~~~~li-~~y~~~g~~~~A~~vf~~m~~--~~~~t 147 (230)
+.....++ |..+|.++ -++|.+++.. |+.++-.+. +.++.-.+| +-+-+++++--|.+.|+++.. |+..-
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 76655555 45566655 5677888887 888877776 444433344 567789999999999998875 66665
Q ss_pred hH
Q 042210 148 HE 149 (230)
Q Consensus 148 ~n 149 (230)
|.
T Consensus 497 We 498 (557)
T KOG3785|consen 497 WE 498 (557)
T ss_pred cC
Confidence 65
No 78
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.83 E-value=0.042 Score=34.07 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=30.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR 152 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li 152 (230)
+...+-.+...|.+.|++++|.+++++... |+...|..++
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 566667788899999999999999998876 7755665554
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.79 E-value=0.26 Score=35.73 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=67.1
Q ss_pred ccCChHHHHHHHHhcC--CCCh-hh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHhhhcCch-
Q 042210 33 EKGDLKYECKVFRKIT--QPSV-FL---WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY--TFPFLFKGFTRDIAG- 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~-~~---yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~--t~~~ll~~~~~~~~~- 103 (230)
..++...+...++.+. -|+. .. .=.+-..+...|++++|...|+......-.|+.. ..-.|-..+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4667777777777765 2332 11 1123355666788888888888887766223211 222345566666777
Q ss_pred -hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 104 -SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 104 -a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
|...+.... ....+...=+.|.+.|+.++|+..|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666554 455556666788888888888888764
No 80
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.78 E-value=0.027 Score=40.91 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=48.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-----SDVRRDNYT 89 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-----~g~~p~~~t 89 (230)
..+...+. ..|+++.|......+. +-|-..|-.+|.+|...|+...|.++|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~--~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALL--EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHH--HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHH--hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45666677 8999999999999876 55677999999999999999999999998754 499998754
No 81
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.77 E-value=0.11 Score=36.92 Aligned_cols=80 Identities=9% Similarity=-0.057 Sum_probs=62.7
Q ss_pred cH-HHHHHHHhhhccCChHHHHHHHHhcC-------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHH-H
Q 042210 21 HC-PKQTRYLLLYEKGDLKYECKVFRKIT-------------------QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-L 79 (230)
Q Consensus 21 ~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-------------------~~~~~~yn~li~~~~~~~~~~~a~~~~~~M-~ 79 (230)
.+ .++|.+++ +.|+++....+.+..= -|+..+-.+++.+|+.++++..|+++.+.. .
T Consensus 3 ~~~~~ii~al~--r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 3 ELLCNIIYALG--RSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred HHHHHHHHHHh--hcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45 77888899 9999999888886531 366777889999999999999999998885 4
Q ss_pred hCCCCCCcccHHHHHHHhhhcCc
Q 042210 80 KSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 80 ~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
..+++-+..+|..|++=+....+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 56888778888888886655443
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.77 E-value=0.56 Score=36.78 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=89.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCc-ccHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDN-YTFPFLF 94 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~-~t~~~ll 94 (230)
-.....+. +.|+++.|...|++.. .|+. ..|..+-.++.+.|++++|...|++..+.. -.|.. .++..+-
T Consensus 37 ~~~g~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 37 YEEAKEAL--DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 44556677 8899999999998765 3332 355667778888899999999999986532 11211 1232232
Q ss_pred HHhhhc--------Cch--hhHHHhhhh-----hHhHH-----------------HHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 95 KGFTRD--------IAG--SLEKSCIVM-----RVFVQ-----------------NALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 95 ~~~~~~--------~~~--a~~~~~~~~-----~~~~~-----------------~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.++.+. |+. |.+.+.... +...+ -.+-..|.+.|++++|...|++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 333322 444 666666554 11111 1334567888999999999998764
Q ss_pred --CCh----hhhHHHHHHhhh----cchhhhHHHHHHH
Q 042210 143 --DDD----GLHELIRIKAVD----DDLHELFPEYLVQ 170 (230)
Q Consensus 143 --~~~----~t~n~li~~~~~----~~~~~~~~~m~~~ 170 (230)
|+. ..|..+...+.. +++.+.++.+..+
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 432 456666555543 4566666655443
No 83
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=0.19 Score=43.50 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=67.1
Q ss_pred ccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHH
Q 042210 33 EKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKS 108 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~ 108 (230)
..|++..|+++|...- +|+...|++.|+-=.+-+.++.|-.+|++..- +.|+..+|.--.+-=-+.|++ ++.++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4455566666665533 67777777777777777777777777777543 347777776666666666766 66666
Q ss_pred hhhh--------hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 109 CIVM--------RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 109 ~~~~--------~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
.... +...+++.-..=.++..++.|+-+|.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk 268 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK 268 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 44455555555556666777766655
No 84
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.62 Score=40.29 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=41.2
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-CCh--hhhHHHHHHhh----hcchhhhHHHHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE-DDD--GLHELIRIKAV----DDDLHELFPEYLV 169 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-~~~--~t~n~li~~~~----~~~~~~~~~~m~~ 169 (230)
|...|.+|=+.|.+.+++++|.+-|.+-.. -|+ ..+..+-..|. .++|...|++..+
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999987665 222 44555544443 2456666665554
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.70 E-value=0.13 Score=36.57 Aligned_cols=89 Identities=2% Similarity=-0.096 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|.+.++.....+ ..+... ..+-..+. +.|++++|...|+... +.+...|..+-..|...|++++|...|++
T Consensus 34 ~~A~~~~~~~~~~~-p~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 34 DEALKLFQLLAAYD-PYNSRYWLGLAACCQ--MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677777776654 223444 66777888 9999999999998864 44556677777788999999999999988
Q ss_pred HHhCCCCCCcccHHHHHH
Q 042210 78 LLKSDVRRDNYTFPFLFK 95 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~ 95 (230)
..+. .|+...+..+..
T Consensus 111 al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 111 AIEI--CGENPEYSELKE 126 (135)
T ss_pred HHHh--ccccchHHHHHH
Confidence 7664 366655544433
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.64 E-value=0.68 Score=38.62 Aligned_cols=108 Identities=12% Similarity=0.020 Sum_probs=69.6
Q ss_pred cCChHHHHHHHHhcC--CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHH
Q 042210 34 KGDLKYECKVFRKIT--QPSV-FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKS 108 (230)
Q Consensus 34 ~~~~~~a~~~~~~m~--~~~~-~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~ 108 (230)
.+..+.+.+.++... .|+. .....+-..+...|++++|...+++..+.. +.+...+..+-..+...|++ +...+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555555555422 1221 222334446677888899999888876643 22445666777778888888 77766
Q ss_pred hhhh---------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 109 CIVM---------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 109 ~~~~---------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.... ....|..+-..|...|+.++|.+++++...
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6655 123455677788888999999999988753
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.64 E-value=0.39 Score=44.27 Aligned_cols=126 Identities=12% Similarity=-0.042 Sum_probs=100.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPSV-FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY-TFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~-~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~-t~~~ll~~~~ 98 (230)
-.|-..-. +.|+.++|..+++..- .||. ...-.+...+.+.+++++|+..+++.... .|+.. ....+-.++.
T Consensus 90 ~~La~i~~--~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 90 VLVARALE--AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHH--HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH
Confidence 44556666 8899999999999876 5654 45677888899999999999999987653 45444 4455566777
Q ss_pred hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHH
Q 042210 99 RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIR 152 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li 152 (230)
+.|+. |..+|+... +...+.++=..+-+.|+.++|...|+.-.+ +.+.-||-.+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 88888 999999988 578888899999999999999999997754 7777777654
No 88
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.64 E-value=0.044 Score=35.76 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=35.3
Q ss_pred CChhHHHHHHHHHHhCCC-CCCcccHHHHHHHhhhcCch--hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 66 DSHKNGVLMYLDLLKSDV-RRDNYTFPFLFKGFTRDIAG--SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~~g~-~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
|+++.|..+|+++....- .|+...+-.+-.++.+.|+. |..+++... +....-.+-.+|.+.|++++|.++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 445555555555444321 11222233344555555555 444444422 22222233556777888888888776
Q ss_pred h
Q 042210 139 M 139 (230)
Q Consensus 139 ~ 139 (230)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 89
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.60 E-value=0.75 Score=40.57 Aligned_cols=102 Identities=7% Similarity=0.041 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch-hhHHHhhhh-----hHhHHHHHHHHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG-SLEKSCIVM-----RVFVQNALISTY 124 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~-a~~~~~~~~-----~~~~~~~li~~y 124 (230)
..+|-..|+.--+..-+..|-.+|.+..+.+..+ +...+++++.-+|..... |.++|+.=. ++.--...++.+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3467777777777788888888888888887777 777888888888877666 888887654 566667788888
Q ss_pred HhcCCHHHHHHHHhhccCC------ChhhhHHHHH
Q 042210 125 CLCGEVDMARGIFYMSCED------DDGLHELIRI 153 (230)
Q Consensus 125 ~~~g~~~~A~~vf~~m~~~------~~~t~n~li~ 153 (230)
...++-..|+.+|++.... ....|..||.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 8888888888888877643 2245777765
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.59 E-value=0.3 Score=35.53 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=69.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
...-..+. ..|++++|...|+... +.+...|..+-..+.+.|++++|...|+.....+ +.+...+..+-.++.+
T Consensus 28 ~~~g~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 28 YASGYASW--QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 33445556 9999999999999865 4567788889999999999999999999987642 3366678888888999
Q ss_pred cCch--hhHHHhhhh
Q 042210 100 DIAG--SLEKSCIVM 112 (230)
Q Consensus 100 ~~~~--a~~~~~~~~ 112 (230)
.|+. |...+....
T Consensus 105 ~g~~~eAi~~~~~Al 119 (144)
T PRK15359 105 MGEPGLAREAFQTAI 119 (144)
T ss_pred cCCHHHHHHHHHHHH
Confidence 9998 777777765
No 91
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.086 Score=48.99 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|.++|++..+.. ..+.+. |-+=-.++ ..|++.+|..+|.+.. ..+..+|=-+-++|...|++..|.++|+.
T Consensus 629 ~KAlq~y~kvL~~d-pkN~yAANGIgiVLA--~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 629 EKALQLYGKVLRND-PKNMYAANGIGIVLA--EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHhcC-cchhhhccchhhhhh--hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 45667776655542 123444 55656666 8889999999998887 23445777788888888999999999988
Q ss_pred -HHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHH------------------HhcCCH
Q 042210 78 -LLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTY------------------CLCGEV 130 (230)
Q Consensus 78 -M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y------------------~~~g~~ 130 (230)
|+...-.-+......|-+++-+.|.+ +.+..-... ..+.+|..+-.. ..-+.+
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~l 785 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKEL 785 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55555445666777788888888877 333222222 455555544222 234557
Q ss_pred HHHHHHHhhccC
Q 042210 131 DMARGIFYMSCE 142 (230)
Q Consensus 131 ~~A~~vf~~m~~ 142 (230)
+.|.++|.+|..
T Consensus 786 e~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 786 EEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHh
Confidence 888888888865
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.52 E-value=0.099 Score=47.60 Aligned_cols=104 Identities=9% Similarity=0.068 Sum_probs=71.4
Q ss_pred ccCChHHHHHHHHhcCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHH
Q 042210 33 EKGDLKYECKVFRKITQPSVF--LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKS 108 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~--~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~ 108 (230)
+.+.+.+|..+++.++..++. -|..+-+.|+..|+++.|.++|.+ ..-|+-.|..|.+.|+| |..+-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHHHHHHH
Confidence 666777888888877744443 477778888888888888888865 22366678888888888 66555
Q ss_pred hhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCCh
Q 042210 109 CIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145 (230)
Q Consensus 109 ~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~ 145 (230)
.... .+..|-+=-.-.-+.|++.+|++++-.+..|+.
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~ 855 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK 855 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH
Confidence 5544 444444444455667777777777777766664
No 93
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.49 E-value=0.31 Score=41.77 Aligned_cols=112 Identities=11% Similarity=-0.053 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcC
Q 042210 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCG 128 (230)
Q Consensus 56 n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g 128 (230)
.+++..+...++++.|..+|+++.+.. |+. ...+.+.+...++- |.++..+.. +....+.-...+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 456666667899999999999998875 553 45577777776665 555555444 6666777778889999
Q ss_pred CHHHHHHHHhhccC--CCh-hhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 129 EVDMARGIFYMSCE--DDD-GLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 129 ~~~~A~~vf~~m~~--~~~-~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
+.+.|.++..+..+ |+. .+|..|..+|...+..+-+---.+..
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999987 654 59999999998765555544333433
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.47 E-value=1.3 Score=37.37 Aligned_cols=162 Identities=10% Similarity=-0.104 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCCCCcH--------HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHH
Q 042210 4 LKQIHSQTIKLGLLTKPHC--------PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGV 72 (230)
Q Consensus 4 a~~~~~~m~~~g~~~~~~~--------~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~ 72 (230)
+..+...|.+.|.-.|... ..++.=.. ..+..+.-...|+..+ +.++..--+++.-+.++|+.++|.
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~--~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR--DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 4556677777777666442 23333333 3334444444666666 334555667888899999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhhcCch------hhHHHhhhh-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C
Q 042210 73 LMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG------SLEKSCIVM-RVFVQNALISTYCLCGEVDMARGIFYMSCE--D 143 (230)
Q Consensus 73 ~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~------a~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~ 143 (230)
++.++-.+.+..|+ -..+-.+.+-++. ++.-...-. ++-.+.+|=..|.|.+.+.+|...|+.-.. |
T Consensus 284 ~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 284 EIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred HHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 99999888888887 2233345555554 333333333 888888888999999999999999996554 8
Q ss_pred ChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 144 DDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 144 ~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
+..+|+-+-.++..-+-.+...++.+++
T Consensus 360 s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 360 SASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999888887666556666666655
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.44 E-value=0.64 Score=40.98 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=91.8
Q ss_pred CCCCcHHHHHHHHhhhccCChHHHHHHHHhcC----CC-ChhhHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCcccH
Q 042210 17 LTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT----QP-SVFLWNTMIKGYSRIDSHKNGVLMYLD-LLKSDVRRDNYTF 90 (230)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~----~~-~~~~yn~li~~~~~~~~~~~a~~~~~~-M~~~g~~p~~~t~ 90 (230)
.|+..-...++.-- |..-++.|+.+|.+.. .+ ++..++++|.-||. ++..-|.++|+- |+..|=.| .|
T Consensus 364 ~~tLv~~~~mn~ir--R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p---~y 437 (656)
T KOG1914|consen 364 DLTLVYCQYMNFIR--RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSP---EY 437 (656)
T ss_pred CCceehhHHHHHHH--HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCCh---HH
Confidence 34432277777777 8888999999999987 34 77889999988876 688899999987 66665444 33
Q ss_pred H-HHHHHhhhcCch--hhHHHhhhh--------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 91 P-FLFKGFTRDIAG--SLEKSCIVM--------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 91 ~-~ll~~~~~~~~~--a~~~~~~~~--------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
. .-++-+...++- ++.+|+... ...+|..+|+-=+.-|++..+.+|=+++..
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2 335555666665 888888887 468999999999999999999988776654
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.37 E-value=0.19 Score=45.46 Aligned_cols=177 Identities=14% Similarity=0.019 Sum_probs=108.4
Q ss_pred CCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042210 18 TKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~ 96 (230)
|-... ..+-..+. +.|-...|..+|+.. ..|.-+|.+|...|+..+|..+..+-.+ -+||..-|..+-+.
T Consensus 396 p~Wq~q~~laell~--slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLL--SLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHH--HcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 44444 66777888 889999999998875 3577788899999988888888766555 45777777777665
Q ss_pred hhhcCch--hhHHHhhhh---------------------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 97 FTRDIAG--SLEKSCIVM---------------------------------RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 97 ~~~~~~~--a~~~~~~~~---------------------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.....-+ |.++.++.. -.-+|=.+=.++-+++++..|.+-|..-.
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 4433222 444444433 11122222223347778888888888776
Q ss_pred C--CC-hhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 142 E--DD-DGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 142 ~--~~-~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
. || ...||.+-.+|.. .++...++|-.+.- ...+.. ..+.|. ...+.|.+++|.+.+.++..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~i--WENyml----vsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQI--WENYML----VSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCee--eechhh----hhhhcccHHHHHHHHHHHHH
Confidence 5 54 5679988776654 45555555443332 111221 111111 44588888888776666544
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.36 E-value=0.16 Score=32.22 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD 100 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~ 100 (230)
.+...+. ..|++++|...|+... +.+...+..+-..+...+++++|...|++..+.. +.+..++..+...+...
T Consensus 5 ~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYY--KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHH--HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3445666 8889999999998865 3334567777888888899999999998876643 22334666677777777
Q ss_pred Cch--hhHHHhh
Q 042210 101 IAG--SLEKSCI 110 (230)
Q Consensus 101 ~~~--a~~~~~~ 110 (230)
|+. +...+..
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 776 5555443
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.31 E-value=1.1 Score=35.77 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=44.0
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
+.|++..|...|.+.. ++|-..||.+=-+|-+.|+.++|-.-|.+-.+- += +...++.|--.+.=.|+. |..
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHH
Confidence 4444444444444433 334444444444444444444444444443221 11 111233333333333444 333
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
++.... |..+-..|.-..+.-|++++|+++-..
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 333333 444444444444444445444444443
No 99
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.25 E-value=1.5 Score=36.42 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-..+...|..+|...|++++....+.++.+
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777888888888888777777665
No 100
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.17 E-value=0.068 Score=43.23 Aligned_cols=78 Identities=6% Similarity=0.059 Sum_probs=59.4
Q ss_pred CChHHHHHHHHhcC----CCChhhHHHHHHHHHhcC----------------ChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 042210 35 GDLKYECKVFRKIT----QPSVFLWNTMIKGYSRID----------------SHKNGVLMYLDLLKSDVRRDNYTFPFLF 94 (230)
Q Consensus 35 ~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~----------------~~~~a~~~~~~M~~~g~~p~~~t~~~ll 94 (230)
++++-...-++.|+ .+|..+|+.||+.+-+.. .-+-+..++++|+..|+.||..+--.|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 45666666666665 788888988888876632 3456889999999999999999999999
Q ss_pred HHhhhcCch---hhHHHhhhh
Q 042210 95 KGFTRDIAG---SLEKSCIVM 112 (230)
Q Consensus 95 ~~~~~~~~~---a~~~~~~~~ 112 (230)
+++++.+.. ..++.-.|.
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999998876 444444444
No 101
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.17 E-value=0.21 Score=36.35 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=71.1
Q ss_pred HHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcC---------CCChhhHHHHHHHHHhcCC-hhHHHHHH
Q 042210 9 SQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKIT---------QPSVFLWNTMIKGYSRIDS-HKNGVLMY 75 (230)
Q Consensus 9 ~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~---------~~~~~~yn~li~~~~~~~~-~~~a~~~~ 75 (230)
..|.+.+..+++.+ |.+|.-.. .-+++.....+++.+. ..+-.+|++++.+.++..- --.+..+|
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~--~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLA--SYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 34455667776544 77887777 7788888888887775 3455679999999987766 45688899
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhhcC
Q 042210 76 LDLLKSDVRRDNYTFPFLFKGFTRDI 101 (230)
Q Consensus 76 ~~M~~~g~~p~~~t~~~ll~~~~~~~ 101 (230)
+-|++.+.+++..-|..+|++|.+..
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 99999889999999999999998763
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.54 Score=37.78 Aligned_cols=38 Identities=8% Similarity=-0.054 Sum_probs=17.3
Q ss_pred hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 104 SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 104 a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|.-+|+++- ++-+.|....+....|++++|..++++.-
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 444444443 33334444444444455555555544443
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.07 E-value=0.53 Score=32.15 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+..+-..|.+.|+.++|.+.+++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344445556667777777777776654
No 104
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.03 E-value=0.28 Score=40.64 Aligned_cols=123 Identities=15% Similarity=0.040 Sum_probs=81.8
Q ss_pred CCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH-
Q 042210 16 LLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP- 91 (230)
Q Consensus 16 ~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~- 91 (230)
...|..- +.+=.+|. +.|-+.+|++.|+.-. .|-+.||--|-+.|.+..++..|+.+|.+=.. ..|..+||-
T Consensus 219 ~~~dwwWk~Q~gkCyl--rLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~ 294 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYL--RLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLL 294 (478)
T ss_pred chHhHHHHHHHHHHHH--HhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhh
Confidence 3445555 77777888 8888888888887643 56666777788888888888888888766322 335444542
Q ss_pred HHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 92 FLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 92 ~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-+-+.+-..++. +.++++... ++....++-.+|--.+++|.|.+.+.++-+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 233444445555 667776665 566666666777777777777777776554
No 105
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.98 E-value=0.18 Score=41.68 Aligned_cols=186 Identities=10% Similarity=0.051 Sum_probs=120.7
Q ss_pred CCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHH-HHHHHHHhcCChhHHHHHHHHHHh-CCCCCCcccHH
Q 042210 17 LTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWN-TMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFP 91 (230)
Q Consensus 17 ~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn-~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~~t~~ 91 (230)
.|-+.+ --|-..|- +..+++.|..+|.+-. -|.-+||- -+-.-+-..++.++|.++|++-.+ ..+ +.....
T Consensus 253 ~~~~dTfllLskvY~--ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~--nvEaiA 328 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQ--RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI--NVEAIA 328 (478)
T ss_pred CCchhHHHHHHHHHH--HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc--cceeee
Confidence 355556 77778898 9999999999998865 45555543 333444456888999999988543 322 333344
Q ss_pred HHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhc----cCCChh--hhHHHHHHhhhc
Q 042210 92 FLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMS----CEDDDG--LHELIRIKAVDD 158 (230)
Q Consensus 92 ~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m----~~~~~~--t~n~li~~~~~~ 158 (230)
++-.+|.-.++. |...++.+. ++..|+.+=-.+.-.+++|.+.--|.+- .+|+.. .|-.+-.....-
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i 408 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI 408 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec
Confidence 444555555666 888888776 8888888766666778888887666643 345543 244343333445
Q ss_pred chhhhHHHHHHHhhhcCch---hhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 159 DLHELFPEYLVQMLALPDT---FMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 159 ~~~~~~~~m~~~~~~~p~~---~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
+.+.+..+.++-- ...|. ..++-|.++ -.+.|++++|+.++.......
T Consensus 409 GD~nlA~rcfrla-L~~d~~h~ealnNLavL---------~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 409 GDFNLAKRCFRLA-LTSDAQHGEALNNLAVL---------AARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred cchHHHHHHHHHH-hccCcchHHHHHhHHHH---------HhhcCchHHHHHHHHHhhhhC
Confidence 7777777777666 33443 344444443 358899999999988666543
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=1.3 Score=35.47 Aligned_cols=135 Identities=16% Similarity=0.049 Sum_probs=90.9
Q ss_pred hHHHHHHHHH---Hhc-CCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHH
Q 042210 3 QLKQIHSQTI---KLG-LLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSVFLWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 3 ~a~~~~~~m~---~~g-~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~~~~~~~a 71 (230)
+..+++.+++ ++| ..++..+ -.+.-+-. -.|+.+.|...++.+. ++.+.-.-++ -+-..|.+++|
T Consensus 30 evv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAl--d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A 105 (289)
T KOG3060|consen 30 EVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAAL--DTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhH
Confidence 4455666653 334 6677766 44555555 7889999999998876 2233332222 12336789999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhhcCch---hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG---SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 72 ~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~---a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.++|+.+.+.+ +-|.+++.-=+-..-..|+- .+.+-+.+. |...|.-|-+.|...|++++|.--++++.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999998877 44666665444444344443 333333333 999999999999999999999999998863
No 107
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=1.2 Score=38.80 Aligned_cols=136 Identities=12% Similarity=0.112 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSV-FLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~-~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
+.|+++|+....-. ..+... -..+.+=+ ++.++..|+.+|+... -|.+ ..|---+..=-..|++..|-.+|++
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Em--knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEM--KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHH--hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46788888765554 222223 66777778 9999999999999865 3443 2343344444456889999999988
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
=. ...|+...|.+-|+-=.+-..+ |+.+++... ++..|--....=.++|.+..|+.||+.-.+
T Consensus 167 W~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 167 WM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 43 3679999999999999998888 999999887 677777777777889999999999886654
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.56 E-value=2.3 Score=35.38 Aligned_cols=117 Identities=10% Similarity=0.049 Sum_probs=74.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcc-cHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSR----IDSHKNGVLMYLDLLKSDVRRDNY-TFPFLF 94 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~----~~~~~~a~~~~~~M~~~g~~p~~~-t~~~ll 94 (230)
...+.+..+...|++++|.+.+++.. .| |...++. ...+.. .+....+.+.+.. ..+..|+.. ....+-
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a 121 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHH
Confidence 44444444338899999999998754 33 4444442 223333 3444444444433 222334332 223344
Q ss_pred HHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 95 KGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 95 ~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
..+...|++ |...++... +...+..+-..|...|++++|...+++..+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 567788888 877777776 677888899999999999999999997664
No 109
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.41 E-value=0.8 Score=41.21 Aligned_cols=120 Identities=12% Similarity=0.131 Sum_probs=83.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~-~t~~~ll~~~~ 98 (230)
+.|-..|. ..|.++.|..+|...- -|. ....|-|-.-|-+.|++++|..-|++-.+ ++|+- ..|+.+=+.|.
T Consensus 358 ~NLgni~~--E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYR--EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHH--HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 66666777 7777777777766544 233 33577788888888999999998888554 56642 24555555666
Q ss_pred hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChh
Q 042210 99 RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDG 146 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~ 146 (230)
..|+. |.+.+.... -....+.|-+.|-..|++.+|..-+++--. ||..
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 66666 555555554 355678899999999999999999987654 6653
No 110
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.39 E-value=0.28 Score=34.93 Aligned_cols=91 Identities=7% Similarity=-0.067 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhh-hHhHHHHHHHHHHhcCC
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM-RVFVQNALISTYCLCGE 129 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~-~~~~~~~li~~y~~~g~ 129 (230)
|..++.++|.++++.|+++....+.+. -.|+.++...=..- +.. +. -+. +..+..+++++|+..|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~--~WgI~~~~~~~~~~---~~~-~s-------pl~Pt~~lL~AIv~sf~~n~~ 67 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS--VWGIDVNGKKKEGD---YPP-SS-------PLYPTSRLLIAIVHSFGYNGD 67 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH--hcCCCCCCccccCc---cCC-CC-------CCCCCHHHHHHHHHHHHhccc
Confidence 345788899999999999988888753 33444332100000 000 00 011 78888889999999999
Q ss_pred HHHHHHHHhhccC--C---ChhhhHHHHHH
Q 042210 130 VDMARGIFYMSCE--D---DDGLHELIRIK 154 (230)
Q Consensus 130 ~~~A~~vf~~m~~--~---~~~t~n~li~~ 154 (230)
+..|.++.+...+ | +-.+|..|+.-
T Consensus 68 i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 68 IFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999887765 1 24567777653
No 111
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.19 E-value=0.38 Score=41.48 Aligned_cols=114 Identities=8% Similarity=0.022 Sum_probs=78.2
Q ss_pred HHhcCCC-CCcH-HHHHHHHhhhccCChHHHHHHHHhc-C--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042210 12 IKLGLLT-KPHC-PKQTRYLLLYEKGDLKYECKVFRKI-T--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86 (230)
Q Consensus 12 ~~~g~~~-~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m-~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 86 (230)
....+.| |+.+ +.|-+.|- +.|+-..|++.+-+- + +.|+.+-.=|-..|....-++++...|+. ..-+.|+
T Consensus 583 q~~slip~dp~ilskl~dlyd--qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek--aaliqp~ 658 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYD--QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK--AALIQPN 658 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhh--cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH--HHhcCcc
Confidence 3344555 5666 88999999 999988888765432 2 55665555566667777778888888765 2346788
Q ss_pred cccHHHHHHHhhh-cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCC
Q 042210 87 NYTFPFLFKGFTR-DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGE 129 (230)
Q Consensus 87 ~~t~~~ll~~~~~-~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~ 129 (230)
.+-|..+|..|.+ .|+. |..++++.- |+...--|+...+..|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8888888776654 4666 666666654 77777777777666654
No 112
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.12 E-value=3.2 Score=37.65 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=75.7
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCcccHHHHHHHhhhcCch---
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD------VRRDNYTFPFLFKGFTRDIAG--- 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g------~~p~~~t~~~ll~~~~~~~~~--- 103 (230)
..+-++-+..++..-.+-+...-+--|..++..+++++|-+.+....... -+-+..-|.-+.+..++.-+.
T Consensus 150 ~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 44455555555555443333445667777888888888888887765421 233455666666666665544
Q ss_pred --hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 104 --SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 104 --a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
..++.+.+. -...|++|-+-|.+.|++|+|+++|++-.+
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666666 478999999999999999999999997543
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.11 E-value=0.88 Score=42.31 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=87.4
Q ss_pred CCCCcHHHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 042210 17 LTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93 (230)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~l 93 (230)
.|+.....++.++...|.|+.++|..+++... .-|..|..++-.+|-..+..++|..+|++-.+ .-|+..-...+
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~l 116 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHL 116 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHH
Confidence 36654477788887669999999999998876 44778999999999999999999999998654 45777778889
Q ss_pred HHHhhhcCch------hhHHHhhhh-hHhHHHHHHHHHHh
Q 042210 94 FKGFTRDIAG------SLEKSCIVM-RVFVQNALISTYCL 126 (230)
Q Consensus 94 l~~~~~~~~~------a~~~~~~~~-~~~~~~~li~~y~~ 126 (230)
+.+|.|.+++ |.++++..+ ..+.+-+.++.+..
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 9999999887 788888777 77777777776653
No 114
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.10 E-value=2.3 Score=33.52 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=21.9
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
..|+...|..-+++.. +.+..+|.++-..|-+.|..+.|.+-|+.
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 5555555555555443 12223445555555555555555555544
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.09 E-value=1.5 Score=32.66 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.|..+-..+...|++++|...|++...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 63 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALK 63 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555566666666666666544
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.66 Score=37.30 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=61.2
Q ss_pred HHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC-CChhhhHHHHH-------Hh-hhcchhh
Q 042210 94 FKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE-DDDGLHELIRI-------KA-VDDDLHE 162 (230)
Q Consensus 94 l~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-~~~~t~n~li~-------~~-~~~~~~~ 162 (230)
...|+..++. |........+......=+..+.|..++|.|++.+..|.+ .+..|-|-|-. +. ...+|+-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 3445566666 555555433444444444455666777777777777776 33334333322 11 2346677
Q ss_pred hHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccccccc
Q 042210 163 LFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 163 ~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
+|++|-+.- .|+.-+.+++.+ +|...|++++|+.++..+...
T Consensus 195 ifeE~s~k~--~~T~~llnG~Av---------~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 195 IFEELSEKT--PPTPLLLNGQAV---------CHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHhccc--CCChHHHccHHH---------HHHHhcCHHHHHHHHHHHHhc
Confidence 777765543 344455555334 555667777777776665544
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.04 E-value=1.1 Score=38.89 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=53.2
Q ss_pred ccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~~~~~--a~~ 106 (230)
..|+.++|+..++.+. .| |+..+.....-+...++..+|.+.++.+... .|+ ....-.+-+++.+.|+. +..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 4455555555555543 33 3334444455555566666666666655442 233 22233334455555555 333
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
++.... |+..|..|-.+|.+.|+..+|..-.-+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 333332 566666666666666666555544443
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.93 E-value=0.096 Score=32.37 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=36.1
Q ss_pred ccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 33 EKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
+.|++++|.+.|+.+. .| |...+-.+..+|.+.|++++|..+++.....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778888888888765 33 5566677888888888888888888776553
No 119
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.81 E-value=1.2 Score=38.52 Aligned_cols=90 Identities=11% Similarity=0.156 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHhhhcCch-hhHHHhhhh-----hHhHHHHHHHHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM-----RVFVQNALISTY 124 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~-----~~~~~~~li~~y 124 (230)
...|.+.|++--+...++.|-.+|.+..+.| +.|+...+++.|.-++..... |..+|+.-. +..--+-.++.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3468889999889899999999999999999 679999999999999887666 888887655 455557788888
Q ss_pred HhcCCHHHHHHHHhhcc
Q 042210 125 CLCGEVDMARGIFYMSC 141 (230)
Q Consensus 125 ~~~g~~~~A~~vf~~m~ 141 (230)
.+.++-+.|+.+|+.-.
T Consensus 477 i~inde~naraLFetsv 493 (660)
T COG5107 477 IRINDEENARALFETSV 493 (660)
T ss_pred HHhCcHHHHHHHHHHhH
Confidence 99999999999999443
No 120
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.70 E-value=0.19 Score=32.67 Aligned_cols=44 Identities=5% Similarity=0.143 Sum_probs=17.9
Q ss_pred ccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
+.|+.++|..+++..+ ..+....-.+-.+|.+.|++++|..+|+
T Consensus 37 ~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 37 QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5555555555554422 1111111122334444555555555544
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.49 E-value=2.9 Score=32.64 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+-.+...+.+.|+++.|...|++.
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~ 59 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEAL 59 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444555555555555554
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.37 E-value=0.28 Score=30.00 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
..+. +.|++++|...|+... .| +...|..+-..+.+.|++++|...|++..+
T Consensus 5 ~~~~--~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALY--QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHH--HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHH--HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455 8999999999999976 33 456777888888899999999999998754
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.25 E-value=1.8 Score=29.43 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=49.7
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCcccHHHHHHH
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD--VRRDNYTFPFLFKG 96 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g--~~p~~~t~~~ll~~ 96 (230)
+...+. +.|+.++|.+.|..+. .|+ ...+..+-..+.+.|+++.|...|+...... -+.....+..+-.+
T Consensus 8 ~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVL--KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344455 7777777777777764 232 1234456666777777777777777765432 11112345555556
Q ss_pred hhhcCch--hhHHHhhhh
Q 042210 97 FTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 97 ~~~~~~~--a~~~~~~~~ 112 (230)
+.+.|+. +...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHhCChHHHHHHHHHHH
Confidence 6666666 555555544
No 124
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=1.1 Score=39.62 Aligned_cols=123 Identities=12% Similarity=0.095 Sum_probs=89.1
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCccc----HHHHHHHhhhcCch
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK--SDVRRDNYT----FPFLFKGFTRDIAG 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~--~g~~p~~~t----~~~ll~~~~~~~~~ 103 (230)
+.++++.|.++|.+.. +.|+...|-+=...-..+.+.+|...|+.-.. ..+-+...+ ++.|=.+|.+.+..
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 7889999999998865 66777777775555667889999999987542 223333323 44444466666666
Q ss_pred --hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc--CCChhhhHHHHHHh
Q 042210 104 --SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC--EDDDGLHELIRIKA 155 (230)
Q Consensus 104 --a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~--~~~~~t~n~li~~~ 155 (230)
|...++... +..+++++-=.|...|+++.|.+-|++-- .||-.+-+.|++.+
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 555555554 89999999889999999999999999764 48887777776643
No 125
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=1.8 Score=37.89 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=20.7
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
|.++++++...|++.+ +.....||-.-..+...++++.|.+.|+.
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 4445555555554443 12233444444444444555555555444
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.09 E-value=6.2 Score=35.25 Aligned_cols=134 Identities=7% Similarity=0.059 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcC------------------CCChhhH--HHHHHHHHhc
Q 042210 6 QIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT------------------QPSVFLW--NTMIKGYSRI 65 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~------------------~~~~~~y--n~li~~~~~~ 65 (230)
.....+.+.|+ |+.+ +.|-..|. .....+-..+++.... .|....| .-+-..|-+.
T Consensus 132 ~yl~~~l~Kgv-PslF-~~lk~Ly~--d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 132 EYLRPQLRKGV-PSLF-SNLKPLYK--DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHhcCC-chHH-HHHHHHHc--ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 33444444553 2222 56666666 5555554555554431 2333334 5556677889
Q ss_pred CChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHH
Q 042210 66 DSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIF 137 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~~g~~p~~-~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf 137 (230)
|++++|++..++-+.. .|+. .-|..--+.+-+.|++ |.+..+... |.++=+-...-+-|+|++++|.+++
T Consensus 208 g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999975553 3542 3566667888899999 777777766 8998899999999999999999999
Q ss_pred hhccCCCh
Q 042210 138 YMSCEDDD 145 (230)
Q Consensus 138 ~~m~~~~~ 145 (230)
..-.+++.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877653
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.02 E-value=1.4 Score=37.32 Aligned_cols=92 Identities=7% Similarity=0.006 Sum_probs=52.6
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
..|++++|.+.|++.. ..+...|..+-.+|.+.|++++|+..+++..+. .|+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~----------------------- 68 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPS----------------------- 68 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------------------
Confidence 4556666666665543 223344555555555566666666665554432 121
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR 152 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li 152 (230)
+...|..+-.+|...|++++|...|++..+ |+.......+
T Consensus 69 ---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 69 ---LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344566666677788888888888887664 5544433333
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.98 E-value=4.2 Score=37.70 Aligned_cols=106 Identities=8% Similarity=-0.088 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|..+++...+ +.|+... ..+...+. +.+++++|....+... .|+ ....+.+-.++.+.|++++|..+|+
T Consensus 103 ~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~--~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 103 DEGLAVWRGIHQ--RFPDSSEAFILMLRGVK--RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred HHHHHHHHHHHh--hCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 455556655444 4687665 67788888 9999999999999876 444 4456667778888999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
+....+ +-+..++..+=.++-..|+. |...|....
T Consensus 179 ~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 179 RLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 988732 22355777888888888988 878787776
No 129
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.82 E-value=1.2 Score=36.35 Aligned_cols=105 Identities=9% Similarity=0.010 Sum_probs=76.7
Q ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-------
Q 042210 38 KYECKVFRKIT--QPSVFLWNTMIKGYSRI-----DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG------- 103 (230)
Q Consensus 38 ~~a~~~~~~m~--~~~~~~yn~li~~~~~~-----~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~------- 103 (230)
--.++.|...+ ++|-.+|-+.+..+... +.++=....++.|++.|+.-|..+|+.||+.+-+..-+
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456676666 77778888888888653 55555666678899999999999999999988765322
Q ss_pred -----------hhHHHhhhh------hHhHHHHHHHHHHhcCC-HHHHHHHHhhccC
Q 042210 104 -----------SLEKSCIVM------RVFVQNALISTYCLCGE-VDMARGIFYMSCE 142 (230)
Q Consensus 104 -----------a~~~~~~~~------~~~~~~~li~~y~~~g~-~~~A~~vf~~m~~ 142 (230)
+..++++|. |..+-..||+++++.+- ..+..++.-.|++
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 455566665 77888888888888765 4556666666664
No 130
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=4.8 Score=35.10 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...|+...+. -|.... +.+=+-|. ...+...|.+-++... +.|...|=.+=.+|.-.+.+.=|+-.|+
T Consensus 347 EKAv~YFkRALkL--Np~~~~aWTLmGHEyv--EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 347 EKAVMYFKRALKL--NPKYLSAWTLMGHEYV--EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HHHHHHHHHHHhc--CcchhHHHHHhhHHHH--HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 3555566554444 344444 33446677 7777777777776644 6677778888888888888877888877
Q ss_pred HHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 77 DLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 77 ~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+-. .++| |...|.+|=++|.+.+++ |...+.... +...+..|-+.|-+.++.++|...|+.-.
T Consensus 423 kA~--~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 423 KAL--ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHH--hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 643 3666 788999999999999998 888888777 44888999999999999999999888644
No 131
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.59 E-value=1.7 Score=35.86 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh--cCch------hhHHHhhhh---------
Q 042210 52 VFLWNTMIKGYSR--IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG------SLEKSCIVM--------- 112 (230)
Q Consensus 52 ~~~yn~li~~~~~--~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~--~~~~------a~~~~~~~~--------- 112 (230)
..++.+++..... ...++....+++.|++.|++-+..+|-+..-.... ..+. +..+++.|.
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 4455555544443 12344677888999999999998888774444433 2232 899999998
Q ss_pred hHhHHHHHHHHHHhcCCH----HHHHHHHhhccC-----CChhhhHHHHHHhh-------hcchhhhHHHHHHHhhhcCc
Q 042210 113 RVFVQNALISTYCLCGEV----DMARGIFYMSCE-----DDDGLHELIRIKAV-------DDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~----~~A~~vf~~m~~-----~~~~t~n~li~~~~-------~~~~~~~~~~m~~~~~~~p~ 176 (230)
+-.++.+|+.. ...++ +.++..++.+.+ -|..-+-+-|-+.. ..++.++++.+.+.+ +++.
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~-~kik 216 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNG-VKIK 216 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC-Cccc
Confidence 56677777766 33333 555666666654 23333333222221 246778888888887 6666
Q ss_pred hhhhhhhhhc
Q 042210 177 TFMGEGLEVI 186 (230)
Q Consensus 177 ~~t~~~l~~~ 186 (230)
...|..+.++
T Consensus 217 ~~~yp~lGlL 226 (297)
T PF13170_consen 217 YMHYPTLGLL 226 (297)
T ss_pred cccccHHHHH
Confidence 6667766666
No 132
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.50 E-value=2.7 Score=39.20 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=79.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHH
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALIST 123 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~ 123 (230)
+.-.|--+-.+|-+.|.+.+|+++|..+.....--+...|--+-.++-..|.. |.+.+.... +.-.--+|-+.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 45578889999999999999999999998877666788898888999888888 888888887 44444556678
Q ss_pred HHhcCCHHHHHHHHhhccCCC
Q 042210 124 YCLCGEVDMARGIFYMSCEDD 144 (230)
Q Consensus 124 y~~~g~~~~A~~vf~~m~~~~ 144 (230)
|-+.|+.|+|.++++.|..||
T Consensus 493 ~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 493 YQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHhcCCHHHHHHHHhcccCCC
Confidence 899999999999999998877
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.46 E-value=2.8 Score=37.34 Aligned_cols=113 Identities=10% Similarity=-0.069 Sum_probs=51.9
Q ss_pred HHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCC-------ChhhhHHHHHHhhhcc
Q 042210 94 FKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCED-------DDGLHELIRIKAVDDD 159 (230)
Q Consensus 94 l~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~-------~~~t~n~li~~~~~~~ 159 (230)
-..|-..|+. |.+..+... .+..|..--..|-+.|++++|.+..+.-+.- |..+--.++.+...++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 3344444444 444444433 3444444445555555555555555554431 1112222334444445
Q ss_pred hhhhHHHHHHHhhhcCchhhhhhhhhcccccC------CcccccccCCccCCccccccccc
Q 042210 160 LHELFPEYLVQMLALPDTFMGEGLEVIPKSQA------PREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 160 ~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~------~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
|.+.+....+.+ ..|-. -+..||+ .-.+|.+.|++..|.+-+..+.+
T Consensus 281 A~~~~~~Ftr~~-~~~~~-------~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTRED-VDPLS-------NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCC-CCccc-------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555544443333 11211 1222222 23377788888887765554443
No 134
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.17 E-value=3.2 Score=29.67 Aligned_cols=120 Identities=12% Similarity=0.024 Sum_probs=77.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..++..+. +.+.++....+++.+. ..+....|.+|..|++.. .....+.++. .++......+++.|.+
T Consensus 11 ~~vv~~~~--~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFE--KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 67888888 8888888888888865 234567899999998763 4445555542 2355666778888888
Q ss_pred cCch--hhHHHhhhhhHhHHHHHHHHHHhc-CCHHHHHHHHhhccCCChhhhHHHHHHhh
Q 042210 100 DIAG--SLEKSCIVMRVFVQNALISTYCLC-GEVDMARGIFYMSCEDDDGLHELIRIKAV 156 (230)
Q Consensus 100 ~~~~--a~~~~~~~~~~~~~~~li~~y~~~-g~~~~A~~vf~~m~~~~~~t~n~li~~~~ 156 (230)
.+.+ +..++..+. -|.-.++.+.+. ++++.|.+.+.+-. +...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~---~~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDG---NFKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhc---CHHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 7776 556665554 122233334333 77788887777632 4446666665443
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.05 E-value=3 Score=30.89 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.|..+...+...|++++|...|++-..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 63 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMR 63 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555566666777777777766544
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.99 E-value=1.9 Score=36.44 Aligned_cols=90 Identities=9% Similarity=0.014 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
+.|.+++++.++. .|+... ..+-.+|. +.|++++|...++... ..+...|..+-.+|.+.|++++|...|+
T Consensus 19 ~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~--~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 19 ALAVDLYTQAIDL--DPNNAELYADRAQANI--KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4677788877765 454433 55667777 9999999999999875 3456678888889999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHh
Q 042210 77 DLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~ 97 (230)
+..+ +.|+...+..++.-|
T Consensus 95 ~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 95 KGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHH--hCCCCHHHHHHHHHH
Confidence 9776 446655555555544
No 137
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=1 Score=37.12 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=62.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-CC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-QP------SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-~~------~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~ 95 (230)
..++..-. ...+++++...+-+++ +| +...| +.+.-+- .-++++++.+...=++.|+-||..|++.+|+
T Consensus 68 d~~V~v~~--~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 68 DRLVDVIS--SREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred hhhhhccc--cccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 55555444 6778999999888776 33 22222 2233333 3467899999998899999999999999999
Q ss_pred HhhhcCch--hhHHHhhhh
Q 042210 96 GFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~ 112 (230)
.+.+.+++ |.++...|.
T Consensus 144 ~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHhcccHHHHHHHHHHHH
Confidence 99999999 666666665
No 138
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.87 E-value=5.9 Score=32.11 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=79.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH---
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK--- 95 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~--- 95 (230)
+.++..+. ..+.+.-....+++.. +.+...-..|.+.--+.||.+.|...|++-++..-+.|..+++.++-
T Consensus 181 y~~~~~ll--G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 181 YSMANCLL--GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHh--cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 55555555 6666655555555554 33445555666666668999999999998777665666666666543
Q ss_pred --HhhhcCch--hhHHHhhhh-----hHhHHHH--HHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH
Q 042210 96 --GFTRDIAG--SLEKSCIVM-----RVFVQNA--LISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR 152 (230)
Q Consensus 96 --~~~~~~~~--a~~~~~~~~-----~~~~~~~--li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li 152 (230)
.+.-.++. +...++++. ++..-|. |+-.| .|+..+|.++.+.|.+ |...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 23333444 566666565 4443333 44444 5889999999999987 6666656553
No 139
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.84 E-value=5 Score=34.98 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=86.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCcccHH-HHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSVFLWNTMIKGYSRIDSHKNGVLMYLD-LLKSDVRRDNYTFP-FLFK 95 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~~~~~~~a~~~~~~-M~~~g~~p~~~t~~-~ll~ 95 (230)
...|..-. |..-++.|+.+|-+.. .+++..|+++|.-++. |+..-|.++|+- |+.- ||...|. --+.
T Consensus 401 C~~~N~v~--r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 401 CVHLNYVL--RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHH--HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 55666666 8888999999998876 6788899999987775 688889999976 4443 4554443 2355
Q ss_pred HhhhcCch--hhHHHhhhh-----h--HhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 96 GFTRDIAG--SLEKSCIVM-----R--VFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~-----~--~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-+.+.++- |+.+|+... + ...|..+|+-=++.|++..|..+=+.|.+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 56677776 999998554 3 68899999999999999888777666654
No 140
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.58 E-value=0.13 Score=32.75 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---------CCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---------QPS-VFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---------~~~-~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+.+-..|. +.|++++|...|++.. .|+ ..+++.+=..|...|++++|+..+++-
T Consensus 9 ~~la~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 9 NNLARVYR--ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHH--HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666777 8888888888887653 122 346777777788888888888888763
No 141
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.57 Score=43.86 Aligned_cols=116 Identities=8% Similarity=0.033 Sum_probs=91.2
Q ss_pred ChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhh
Q 042210 36 DLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCI 110 (230)
Q Consensus 36 ~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~ 110 (230)
..++|.++|.+.. +.|...=|-+=-.++..|++..|..+|.+-+..... +..+|-.+-.+|...|++ |.++|+.
T Consensus 627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888764 556666677777888999999999999998876552 334688899999999999 9999988
Q ss_pred hh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C--ChhhhHHHH
Q 042210 111 VM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE--D--DDGLHELIR 152 (230)
Q Consensus 111 ~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~--~~~t~n~li 152 (230)
.. ++.+.+.|-.++-+.|.+.+|.+..-.-.. | .++-+|..+
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 77 788889999999999999999887664433 3 345567543
No 142
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.33 E-value=2 Score=40.72 Aligned_cols=128 Identities=13% Similarity=0.003 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 6 QIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.++...+...+.|+... +.|=..|. ..-+...|.+-|++.. ..|...+-...+.|++..+++.|+.+.-. .
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYr--d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~--~ 552 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYR--DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR--A 552 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH--H
Confidence 44444455555555444 44445555 4456778888888766 45667889999999999999999998322 2
Q ss_pred CCCCC-CcccHHHHHHHhhhcCch---hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 81 SDVRR-DNYTFPFLFKGFTRDIAG---SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 81 ~g~~p-~~~t~~~ll~~~~~~~~~---a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
....| -...++-.- .|-. +.+.++.+. |...|..|.++|.++|++..|.++|++...
T Consensus 553 ~qka~a~~~k~nW~~-----rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQ-----RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhh-----ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 11111 111111111 2222 444444333 889999999999999999999999987665
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.25 E-value=4.5 Score=29.96 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=42.7
Q ss_pred ccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
..|++++|..+|...- .| +..-|-.|=.++-..|++++|...|......+ ||
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~d----------------------- 101 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--ID----------------------- 101 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------------
Confidence 5566666666666544 22 22233344444444566666666665543332 21
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
|+..+-.+=..|-+.|+.+.|++-|+.
T Consensus 102 ---dp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 102 ---APQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred ---CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555666667777777766664
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.00 E-value=4.9 Score=38.25 Aligned_cols=119 Identities=7% Similarity=-0.050 Sum_probs=72.9
Q ss_pred hcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042210 14 LGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QPSV---FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD 86 (230)
Q Consensus 14 ~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~---~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 86 (230)
..+.|+..- ..|+..+. ..+++++|.++.+.-. .|+. ..|..+ -+.+.++.+.+..+ .+. +..+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~--~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l--~~~~~ 95 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYK--SENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLI--DSFSQ 95 (906)
T ss_pred ccCCcchHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhh--hhccc
Confidence 346666555 88999999 9999999999988654 4443 233333 45555666665555 211 11111
Q ss_pred c--------------------ccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 87 N--------------------YTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 87 ~--------------------~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
. ..+-.+-.+|-+.|+. +..+++.+. |..+.|.+--.|+.. ++++|..++..
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 1 2344455555555666 666666665 666777777777777 77777766665
Q ss_pred cc
Q 042210 140 SC 141 (230)
Q Consensus 140 m~ 141 (230)
-.
T Consensus 175 AV 176 (906)
T PRK14720 175 AI 176 (906)
T ss_pred HH
Confidence 43
No 145
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.97 E-value=6.2 Score=31.21 Aligned_cols=144 Identities=10% Similarity=-0.080 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 4 LKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 4 a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
|+.-++...+. .|+..- ..+-..|. +.|+.+.|.+-|.+.. +.+..+.|-.=.-+|..|++++|...|++-
T Consensus 54 A~~nlekAL~~--DPs~~~a~~~~A~~Yq--~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 54 AKKNLEKALEH--DPSYYLAHLVRAHYYQ--KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHH--HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 44444444443 355544 44556666 8888888888887754 333334333333346667888888888885
Q ss_pred HhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHH
Q 042210 79 LKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHEL 150 (230)
Q Consensus 79 ~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~ 150 (230)
....--| -..||..+--+..+.|+. ++..++.-. .....-.+-....+.|+.-.|+..++....+...+-.+
T Consensus 130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 5543222 334677776677777877 777777766 45566667777778888888888888776644444344
Q ss_pred H
Q 042210 151 I 151 (230)
Q Consensus 151 l 151 (230)
|
T Consensus 210 L 210 (250)
T COG3063 210 L 210 (250)
T ss_pred H
Confidence 3
No 146
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.91 E-value=12 Score=34.06 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-H--HHHHHHhhhccCChHHHHHHHHhcC----CCChh-hHHHHHHHHHh---cCChhH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-P--KQTRYLLLYEKGDLKYECKVFRKIT----QPSVF-LWNTMIKGYSR---IDSHKN 70 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~--~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~-~yn~li~~~~~---~~~~~~ 70 (230)
+..+.+++.+....+.....+ | -+|. .+..++++.++++.-. .|++. .||.-+.-+.+ ...++.
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLE-----eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLE-----EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445677777777765433322 2 1222 4456788888887643 56653 57766666655 356788
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhh--cCch--hhHHHhhhh-------hHhHHHHHHH-----------------
Q 042210 71 GVLMYLDLLKSDVRRDNYTFPFLFKGFTR--DIAG--SLEKSCIVM-------RVFVQNALIS----------------- 122 (230)
Q Consensus 71 a~~~~~~M~~~g~~p~~~t~~~ll~~~~~--~~~~--a~~~~~~~~-------~~~~~~~li~----------------- 122 (230)
|-.+|++-.. |++|...-+--|+.+=.. .|-. +..+++... -...||..|+
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 8888888766 787765444333332211 1222 555555544 2334444442
Q ss_pred -------------------HHHhcCCHHHHHHHHhhccC---CCh--hhhHHHHHHhhhcchhhhHHHHHH
Q 042210 123 -------------------TYCLCGEVDMARGIFYMSCE---DDD--GLHELIRIKAVDDDLHELFPEYLV 169 (230)
Q Consensus 123 -------------------~y~~~g~~~~A~~vf~~m~~---~~~--~t~n~li~~~~~~~~~~~~~~m~~ 169 (230)
.=++.|++|.|+.++.--.+ |.+ .-|.+-=.=-.+.+..+-.++|++
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 22478999999998875443 433 335443222222333444555544
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.86 E-value=0.98 Score=27.46 Aligned_cols=27 Identities=15% Similarity=-0.075 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 042210 114 VFVQNALISTYCLCGEVDMARGIFYMS 140 (230)
Q Consensus 114 ~~~~~~li~~y~~~g~~~~A~~vf~~m 140 (230)
...+..+-..+...|++++|...|++.
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444455555555555444
No 148
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.74 E-value=0.067 Score=38.69 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=61.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~ 98 (230)
..+++.+. +.+.++....+++.+. ..+....|.++..|++.++.+...++++. .+......+++.|.
T Consensus 11 ~~vi~~~~--~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~ 81 (143)
T PF00637_consen 11 SEVISAFE--ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCE 81 (143)
T ss_dssp CCCHHHCT--TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHH
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHH
Confidence 34556666 6666666666666554 23455677777777777666666666551 11122234555555
Q ss_pred hcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----------CChhhhHHHHHHhhh
Q 042210 99 RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE-----------DDDGLHELIRIKAVD 157 (230)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-----------~~~~t~n~li~~~~~ 157 (230)
+.|. |...+-.|.+.|+.++|.++...+.. +|...|..+++.+..
T Consensus 82 ~~~l--------------~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 82 KHGL--------------YEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD 137 (143)
T ss_dssp TTTS--------------HHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred hcch--------------HHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4433 33334467777777777665444332 445566666665543
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.61 E-value=0.97 Score=28.12 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
..|. +.+++++|.++++.+. +.+...|...=..+.+.|++.+|...|+...+
T Consensus 3 ~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYL--QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHH--hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567 8999999999999876 44556677777788899999999999998764
No 150
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=1.6 Score=38.97 Aligned_cols=175 Identities=10% Similarity=-0.026 Sum_probs=100.4
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh--h
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT--R 99 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~--~ 99 (230)
=++.+. +.+++++|....+++. +-|...+.+=+.+..+.+.+++|+.+.+. .+..-....|. .=++|| +
T Consensus 18 ~ln~~~--~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~-fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHG--KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF-FEKAYCEYR 91 (652)
T ss_pred HHHHhc--cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh-HHHHHHHHH
Confidence 356677 8899999999998876 23445566666788999999999966443 22111111111 344454 3
Q ss_pred cCch--hhHHHhhhh--hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhHHHHHHHhhhcC
Q 042210 100 DIAG--SLEKSCIVM--RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLALP 175 (230)
Q Consensus 100 ~~~~--a~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~~~m~~~~~~~p 175 (230)
.+.. +...+.-.. +..+-..=-..+-|.|++++|.+++..+.+.+...+-.-+......-+-.+--...+.-...|
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 4444 444444222 333333334566789999999999999977666666665554332211111111222222334
Q ss_pred chhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 176 DTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 176 ~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
..||.. +++... .+...|.+.+|++++...
T Consensus 172 -e~syel--~yN~Ac----~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 172 -EDSYEL--LYNTAC----ILIENGKYNQAIELLEKA 201 (652)
T ss_pred -cchHHH--HHHHHH----HHHhcccHHHHHHHHHHH
Confidence 334444 333111 344678888998887766
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.95 E-value=0.77 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHH
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGLHEL 150 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~ 150 (230)
.+|..+-..|.+.|++++|+++|++..+ || ...|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4577888999999999999999999876 54 334443
No 152
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=89.86 E-value=4.4 Score=37.91 Aligned_cols=171 Identities=10% Similarity=0.098 Sum_probs=107.5
Q ss_pred HHHHhhhccCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH----------
Q 042210 26 TRYLLLYEKGDLKYECKVFRKIT-----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF---------- 90 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~---------- 90 (230)
++.|- ..++-+.|.+.++... .-+...+|.+...|.+...++.|.....++......+|..-|
T Consensus 287 ~~~~~--~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 287 AHYFI--THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHH--HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 44555 6666677777776654 223445788888888888899999888888762222222222
Q ss_pred ------------HHHH-H---HhhhcCch--hhHHHhhhh--------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--
Q 042210 91 ------------PFLF-K---GFTRDIAG--SLEKSCIVM--------RVFVQNALISTYCLCGEVDMARGIFYMSCE-- 142 (230)
Q Consensus 91 ------------~~ll-~---~~~~~~~~--a~~~~~~~~--------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-- 142 (230)
..=+ + +..+.... ...+..... ++..|.-+.++|...|.+.+|.++|..+..
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1111 1 11111111 222222222 678888899999999999999999999986
Q ss_pred --CChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc----hhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 143 --DDDGLHELIRIKAVD----DDLHELFPEYLVQMLALPD----TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 143 --~~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~----~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
.+...|--+-.++.. ++|.+.++...... || .+|..+ -+.+.|+.|+|.+.+..+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~---p~~~D~Ri~Las------------l~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA---PDNLDARITLAS------------LYQQLGNHEKALETLEQI 509 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCchhhhhhHHH------------HHHhcCCHHHHHHHHhcc
Confidence 344566666666653 56777777665543 55 334444 345889999988877765
Q ss_pred c
Q 042210 213 H 213 (230)
Q Consensus 213 ~ 213 (230)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 4
No 153
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.64 E-value=1.3 Score=31.95 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhh
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAV 156 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~ 156 (230)
....++..+...|++++|.++...... | |-..|-.+|.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~ 107 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA 107 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344445555555555555555555543 2 2334555555443
No 154
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.61 E-value=4.1 Score=29.08 Aligned_cols=89 Identities=6% Similarity=-0.056 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhhhhHhHHHHHHHHHHhcCCHH
Q 042210 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVMRVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 53 ~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~~~~~~~~li~~y~~~g~~~ 131 (230)
.....+|..+...+.+.....+++.+...+- .+...++.++..|++...- ....+..-.+.+....++..+-+.+.++
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHH
Confidence 3455688888888899999999999888773 5777899999999987665 4444442112233333555555556666
Q ss_pred HHHHHHhhccC
Q 042210 132 MARGIFYMSCE 142 (230)
Q Consensus 132 ~A~~vf~~m~~ 142 (230)
++.-++..+..
T Consensus 87 ~~~~l~~k~~~ 97 (140)
T smart00299 87 EAVELYKKDGN 97 (140)
T ss_pred HHHHHHHhhcC
Confidence 66666665543
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.58 E-value=2.2 Score=30.77 Aligned_cols=102 Identities=8% Similarity=-0.057 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhcCCCCC-cH--HHH--HHHHhhhccCChHHHHHHHHhcC--CCChh----hHHHHHHHHHhcCChhHH
Q 042210 3 QLKQIHSQTIKLGLLTKP-HC--PKQ--TRYLLLYEKGDLKYECKVFRKIT--QPSVF----LWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~-~~--~~l--l~~~~~~~~~~~~~a~~~~~~m~--~~~~~----~yn~li~~~~~~~~~~~a 71 (230)
.+...++.+.+.. |+. .. ..| -..+. ..|++++|...|+... .||.. ..-.+-..+...|++++|
T Consensus 29 ~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~--~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 29 KAEAAAEQLAKDY--PSSPYAALAALQLAKAAY--EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred HHHHHHHHHHHHC--CCChHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4566677777764 333 33 333 36677 9999999999999876 34432 333456677789999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhh
Q 042210 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCI 110 (230)
Q Consensus 72 ~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~ 110 (230)
+..++......+.|. .+...=+.+.+.|+. |...|..
T Consensus 105 l~~L~~~~~~~~~~~--~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 105 LATLQQIPDEAFKAL--AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHhccCcchHHH--HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999977544444433 455566788889998 8877764
No 156
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.36 E-value=14 Score=35.69 Aligned_cols=101 Identities=15% Similarity=-0.086 Sum_probs=67.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--h----------------hHHHhhh
Q 042210 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--S----------------LEKSCIV 111 (230)
Q Consensus 50 ~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a----------------~~~~~~~ 111 (230)
-|...|--+|+...+.|.+++-.+.+..-++..-.|... +.||-+|++.+++ . .+.|+.-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 355678889999999999998888777666666667654 4788899988776 1 2222211
Q ss_pred h---------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHH
Q 042210 112 M---------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIK 154 (230)
Q Consensus 112 ~---------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~ 154 (230)
. ++.-|.-|-..+...|++..|.+--++- .+..||--.--+
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVCFA 1258 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHH
Confidence 1 5666777777888888877776544432 355566654333
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.34 E-value=9.8 Score=36.31 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=80.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
-.+-.+|- +.|+.++|..+|++.. ..|...-|-+-..|+.. ++++|..++..-... +..
T Consensus 120 ~~LA~~Yd--k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 120 RTLAEAYA--KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHH--HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44556666 7788888888887765 44566667776677777 777777777664332 221
Q ss_pred cCch--hhHHHhhhh-------------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhH
Q 042210 100 DIAG--SLEKSCIVM-------------------------RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHE 149 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-------------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n 149 (230)
..+. +..+|..+. -+.++--|-.-|-+..+++++..+|...-+ .|...-.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 2222 223333332 234444455778888899999999998765 5666666
Q ss_pred HHHHHhhhc-chhhhHHHHHHH
Q 042210 150 LIRIKAVDD-DLHELFPEYLVQ 170 (230)
Q Consensus 150 ~li~~~~~~-~~~~~~~~m~~~ 170 (230)
-++.+|... +....|++..+-
T Consensus 262 ~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 262 ELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred HHHHHHHHHccCcchHHHHHHH
Confidence 677777632 335555555443
No 158
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.22 E-value=2.7 Score=34.24 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=60.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCcccHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-----SDVRRDNYTFPFLF 94 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-----~g~~p~~~t~~~ll 94 (230)
..++..+. ..|+.+.+.+.++++- +-|-..|-.+|.+|.+.|+...|.+.|+.+.+ .|+.|...+.....
T Consensus 157 ~~lae~~~--~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 157 TKLAEALI--ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHH--hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 66777788 8899999999998876 45667899999999999999999999998866 58999887777766
Q ss_pred HH
Q 042210 95 KG 96 (230)
Q Consensus 95 ~~ 96 (230)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 66
No 159
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.00 E-value=2.5 Score=39.05 Aligned_cols=78 Identities=8% Similarity=-0.044 Sum_probs=62.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 64 ~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
....|.+|+.+++.++.....- .-|..+-+.|+..|++ |+++|.. .-.++-.|.+|++.|+++.|.++-++..
T Consensus 744 ~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e---~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTE---ADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHh---cchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 3567888888888777765543 3478888999999999 8888874 4556777999999999999999999988
Q ss_pred CCChh
Q 042210 142 EDDDG 146 (230)
Q Consensus 142 ~~~~~ 146 (230)
.|...
T Consensus 819 ~~e~t 823 (1636)
T KOG3616|consen 819 GPEAT 823 (1636)
T ss_pred CchhH
Confidence 77543
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=88.94 E-value=3.6 Score=30.48 Aligned_cols=57 Identities=5% Similarity=-0.304 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh-h-hhHH---HHHHhhhcchhhhHHHHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDD-G-LHEL---IRIKAVDDDLHELFPEYLV 169 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~-~-t~n~---li~~~~~~~~~~~~~~m~~ 169 (230)
+..-|-.|=-.+-..|++++|...|...-. ||. . .+|. .+.....+++.+-|+....
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555666677888888888886654 433 2 2332 2333334556666665443
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.90 E-value=6 Score=31.99 Aligned_cols=87 Identities=8% Similarity=-0.016 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----h---HhHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSD----VRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----R---VFVQNA 119 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g----~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~---~~~~~~ 119 (230)
.|+..+..+.+.|++++|...|+...+.- ..|+ .+--+-..+...|+. |...|..+. + ...+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~--A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPN--ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 46666655566688888888888876531 1222 233345555566666 555555554 1 222222
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC
Q 042210 120 LISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...|.+.|+.++|.++|++..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777776654
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=1.9 Score=36.26 Aligned_cols=180 Identities=10% Similarity=0.040 Sum_probs=91.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHH-----HHh----cCChhHHHHHHHHHHhCCCC----CCccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKG-----YSR----IDSHKNGVLMYLDLLKSDVR----RDNYT 89 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~-----~~~----~~~~~~a~~~~~~M~~~g~~----p~~~t 89 (230)
-.++--|. +.+++.+|..+.+++.+-... .-++.+ +++ .....-|...|+---.++.. |...+
T Consensus 289 lNL~iYyL--~q~dVqeA~~L~Kdl~PttP~--EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLIIYYL--NQNDVQEAISLCKDLDPTTPY--EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhheeeec--ccccHHHHHHHHhhcCCCChH--HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 33455566 899999999998888633322 222222 222 22333455555544344433 33333
Q ss_pred HHHHHHHhhhcCch---hhHHHhhhh--hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHH-Hhhhcch
Q 042210 90 FPFLFKGFTRDIAG---SLEKSCIVM--RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRI-KAVDDDL 160 (230)
Q Consensus 90 ~~~ll~~~~~~~~~---a~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~-~~~~~~~ 160 (230)
..+-+-.+.+-.++ ...+-.... |.+.+| +-.+++-.|+..+|+++|-.+.. +|-.+|-+++. +|...+-
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 22222222221111 111111111 455444 45677888999999999988876 46678888765 5555554
Q ss_pred hhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccccccc
Q 042210 161 HELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 161 ~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
-++.=+|.-......+.++.-. ++ .+-|-+.+.+=-|-+.|+.+...
T Consensus 444 P~lAW~~~lk~~t~~e~fsLLq--lI------An~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTPSERFSLLQ--LI------ANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred chHHHHHHHhcCCchhHHHHHH--HH------HHHHHHHHHHHHHHHhhhHHHcc
Confidence 4444444333322223333222 32 22555666655555555555543
No 163
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=5.6 Score=32.82 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=73.4
Q ss_pred HHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------------CCccc-
Q 042210 28 YLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-------------RDNYT- 89 (230)
Q Consensus 28 ~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~-------------p~~~t- 89 (230)
+|...+.|+.+.|.+-|+... -...+.||.-+..| +.++...|++...++.++|++ ||..+
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 343348888999988888765 23456788777544 457888899988888877654 22111
Q ss_pred -------HHHHHH-------HhhhcCch--hhHHHhhhh----------------------------------------h
Q 042210 90 -------FPFLFK-------GFTRDIAG--SLEKSCIVM----------------------------------------R 113 (230)
Q Consensus 90 -------~~~ll~-------~~~~~~~~--a~~~~~~~~----------------------------------------~ 113 (230)
-+.++. .+-+.++. |++-+.+|+ .
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCC
Confidence 112222 22344555 555555555 5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 114 VFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 114 ~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
..|+..++-.|||..-++-|.+|+-+=.
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 6777888888888888888888877644
No 164
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=5.7 Score=34.90 Aligned_cols=111 Identities=10% Similarity=-0.008 Sum_probs=54.1
Q ss_pred HHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCc
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~ 102 (230)
.+|. ...+.++-...|++.. +-|.-+|.--=..+.-.+++++|..=|++-++ +.| +...|.-+-.+.-|.+.
T Consensus 368 ~~y~--d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 368 AAYA--DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHh--hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHH
Confidence 4455 6666777777776654 22222333222223333455555555554333 223 22233333333334444
Q ss_pred h--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 103 G--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 103 ~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+ ++..|++.. -+.+||-.-..+...+++++|.+-|+.-.
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 4 555555554 45556655566666666666666555443
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.32 E-value=7 Score=27.50 Aligned_cols=21 Identities=0% Similarity=0.091 Sum_probs=10.5
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 042210 58 MIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M 78 (230)
+-+.+-..|++++|..+|++-
T Consensus 44 lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333444455555555555553
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.12 E-value=14 Score=30.79 Aligned_cols=85 Identities=7% Similarity=-0.046 Sum_probs=65.3
Q ss_pred CCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 042210 17 LTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95 (230)
Q Consensus 17 ~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~ 95 (230)
-|+.-. -.-+.+++ +.+++++-.++... +..+.-|-.++.+|.+.|+..+|..+... .++.--+.
T Consensus 205 v~dkrfw~lki~aLa--~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~ 270 (319)
T PF04840_consen 205 VPDKRFWWLKIKALA--ENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVE 270 (319)
T ss_pred CcHHHHHHHHHHHHH--hcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHH
Confidence 367777 88899999 99999999887665 44568899999999999999999988766 34467888
Q ss_pred HhhhcCch--hhHHHhhhhhHh
Q 042210 96 GFTRDIAG--SLEKSCIVMRVF 115 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~~~~ 115 (230)
.|.++|++ |-+.-....|..
T Consensus 271 ~y~~~~~~~~A~~~A~~~kd~~ 292 (319)
T PF04840_consen 271 MYLKCGDYKEAAQEAFKEKDID 292 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCCHH
Confidence 89999987 444333333433
No 167
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.04 E-value=4.4 Score=29.69 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=49.1
Q ss_pred HHHHHHHhhh-ccCChHHHHHHHHhcC--CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042210 23 PKQTRYLLLY-EKGDLKYECKVFRKIT--QPS---VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96 (230)
Q Consensus 23 ~~ll~~~~~~-~~~~~~~a~~~~~~m~--~~~---~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~ 96 (230)
+.||+....+ ...+++++..+++.|. .|+ ..++...| +.++|++.+|.++|++....+..+ .|..-+.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A 85 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHH
Confidence 5555554422 7789999999999987 444 45666664 567899999999999998875332 34444444
Q ss_pred hh
Q 042210 97 FT 98 (230)
Q Consensus 97 ~~ 98 (230)
+|
T Consensus 86 ~C 87 (153)
T TIGR02561 86 LC 87 (153)
T ss_pred HH
Confidence 44
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.01 E-value=7.1 Score=27.48 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcC--CCC---h-hhHHHHHHHHHhcCChhHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKIT--QPS---V-FLWNTMIKGYSRIDSHKNGV 72 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~---~-~~yn~li~~~~~~~~~~~a~ 72 (230)
++|..+++.....|...+... -.+-+.+. ..|++++|..+|++.. .|+ . ...-.+--++...|+.++|+
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr--~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLR--NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHH
Confidence 478889999999887765333 33446677 8999999999999865 354 1 11112223667789999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 73 LMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 73 ~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
+.+-.-... +...|.--|..|++
T Consensus 96 ~~~l~~la~----~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 96 EWLLEALAE----TLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHh
Confidence 988664432 33356665655543
No 169
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.92 E-value=1.1 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 116 VQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
+|+.|=..|.+.|++++|..+|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477888999999999999999987
No 170
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.90 E-value=0.18 Score=36.40 Aligned_cols=111 Identities=8% Similarity=0.007 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042210 5 KQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~ 83 (230)
.+..+.+.+.+-..+... +.++..|+ +.++.++..++++.... .-...++..|-+.|.++++.-++.++....-
T Consensus 27 ~~yLe~~~~~~~~~~~~~~~~L~~ly~--~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~ 101 (143)
T PF00637_consen 27 IEYLEALVKENKENNPDLHTLLLELYI--KYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKLGNHDE 101 (143)
T ss_dssp TCCHHHHHHTSTC-SHHHHHHHHHHHH--CTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCCTTHTT
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHH--hcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHcccHHH
Confidence 345566666665566777 99999999 99888888888874433 3345577788888888888888877543211
Q ss_pred CCCcccHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCC
Q 042210 84 RRDNYTFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGE 129 (230)
Q Consensus 84 ~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~ 129 (230)
.+..+...+++ |.+......+..+|..+++.+...+.
T Consensus 102 ---------al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 102 ---------ALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp ---------CSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred ---------HHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 11113333444 55445545577778777777765543
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.75 E-value=2.5 Score=26.66 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A 133 (230)
+|+.+=..|...|++++|+..|++-.+. +...|+- ......+++.+-..|.+.|++++|
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~---------------~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A 65 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI---------------EEQLGDD------HPDTANTLNNLGECYYRLGDYEEA 65 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------HHHTTTH------HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHHCCC------CHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5677777788888888888888774332 0000100 000255666777788888888888
Q ss_pred HHHHhh
Q 042210 134 RGIFYM 139 (230)
Q Consensus 134 ~~vf~~ 139 (230)
.+.|++
T Consensus 66 ~~~~~~ 71 (78)
T PF13424_consen 66 LEYYQK 71 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887775
No 172
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=4.3 Score=36.09 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=48.2
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC------CChhhhHHHHH----Hhh----hcchhhhHHHHHHHhhhcCchh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE------DDDGLHELIRI----KAV----DDDLHELFPEYLVQMLALPDTF 178 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~------~~~~t~n~li~----~~~----~~~~~~~~~~m~~~~~~~p~~~ 178 (230)
|+.+.+=+=-.+-..+.+.+|...|..-.. +...+|-.+.. .+. .++|+..++.-..--...+ .
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~--~ 490 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA--S 490 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch--h
Confidence 444444433333445666666666664432 22224544432 222 2466666665544332233 3
Q ss_pred hhhhhhhcccccCCcccccccCCccCCccccccccccCCCcccc
Q 042210 179 MGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMSL 222 (230)
Q Consensus 179 t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~~~ 222 (230)
|+.++.. .+...|+++.|...+.. ...+.||..
T Consensus 491 ~~asig~---------iy~llgnld~Aid~fhK--aL~l~p~n~ 523 (611)
T KOG1173|consen 491 THASIGY---------IYHLLGNLDKAIDHFHK--ALALKPDNI 523 (611)
T ss_pred HHHHHHH---------HHHHhcChHHHHHHHHH--HHhcCCccH
Confidence 3444223 46677888888766553 234455543
No 173
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.27 E-value=13 Score=33.12 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=65.0
Q ss_pred HHHHHHH-HHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 5 KQIHSQT-IKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 5 ~~~~~~m-~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
.++|-.+ ...+-++|+.+ ..|=-.|- -.|.+++|..-|+... +-|...||-|=..++...+..+|..-|++-.
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~--ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYN--LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHh--cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 3444444 45555567777 55555555 7889999999999865 4467899999999999999999999998865
Q ss_pred hCCCCCCcc--cHHHHHHHhhhcCch
Q 042210 80 KSDVRRDNY--TFPFLFKGFTRDIAG 103 (230)
Q Consensus 80 ~~g~~p~~~--t~~~ll~~~~~~~~~ 103 (230)
+ ++|+-+ -||.-|. |...|.+
T Consensus 492 q--LqP~yVR~RyNlgIS-~mNlG~y 514 (579)
T KOG1125|consen 492 Q--LQPGYVRVRYNLGIS-CMNLGAY 514 (579)
T ss_pred h--cCCCeeeeehhhhhh-hhhhhhH
Confidence 5 455432 3444333 5555555
No 174
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.26 E-value=22 Score=34.44 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=72.9
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhh
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIV 111 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~ 111 (230)
..+++++|.++-+...+|. .|+-+-.+-.+.|...+|.+-|-+ . -|...|.-+++.+.+.|.+ -.--+-.|
T Consensus 1087 ~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyik--a----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIK--A----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHh--c----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4557777777777776666 788998898899999988887632 1 2677899999999999998 22112222
Q ss_pred h-----hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 112 M-----RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 112 ~-----~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
. .+.+=+.||-+|+|.+++.+-+..+.
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhc
Confidence 2 66677889999999999988776654
No 175
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=87.13 E-value=12 Score=28.77 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=70.2
Q ss_pred CCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHH-HHhcCC--hhHHHHHHHHHHhCCCCCCc
Q 042210 16 LLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKG-YSRIDS--HKNGVLMYLDLLKSDVRRDN 87 (230)
Q Consensus 16 ~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~-~~~~~~--~~~a~~~~~~M~~~g~~p~~ 87 (230)
..|+... ..+-..|. ..|+.++|...|+... ..|...|..+-.+ +.+.|+ .++|..++++-.+.+-. +.
T Consensus 68 ~~P~~~~~w~~Lg~~~~--~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~ 144 (198)
T PRK10370 68 ANPQNSEQWALLGEYYL--WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EV 144 (198)
T ss_pred HCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-Ch
Confidence 3465554 66667888 9999999999999865 4456667666665 356676 58999999997765432 45
Q ss_pred ccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 88 YTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 88 ~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
..+..+-..+.+.|++ |...|+.+.
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5777788888899999 888888876
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=87.00 E-value=10 Score=27.95 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
..+...+. ..|++++|...|+... .|+ ..+|..+=..|...|++++|...++.-.+.
T Consensus 39 ~~~g~~~~--~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQ--SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33445555 8899999999998874 333 246778888899999999999999886653
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=86.96 E-value=3.8 Score=37.56 Aligned_cols=125 Identities=10% Similarity=-0.087 Sum_probs=82.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHH-Hh--C--CCCC-CcccHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LK--S--DVRR-DNYTFPFLF 94 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M-~~--~--g~~p-~~~t~~~ll 94 (230)
..+|.+|. ..|+..+|.++..+-. +||...|..+-+....-.-+++|+++++.- .+ . |-.+ +...|....
T Consensus 428 ~~vi~CY~--~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 428 DPVILCYL--LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEAD 505 (777)
T ss_pred HHHHHHHH--HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHH
Confidence 67888888 8998888888876543 677777877777776666677777777663 22 1 1111 223344443
Q ss_pred HHh---------------------hhcCch---hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChh
Q 042210 95 KGF---------------------TRDIAG---SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG 146 (230)
Q Consensus 95 ~~~---------------------~~~~~~---a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~ 146 (230)
+.+ .+.+++ ++..+.... +-..||.+-.+|.+.|.-.+|.+.+.+--+-|-.
T Consensus 506 ~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 322 233343 333333333 7889999999999999999999999987764444
Q ss_pred hhH
Q 042210 147 LHE 149 (230)
Q Consensus 147 t~n 149 (230)
.|+
T Consensus 586 ~w~ 588 (777)
T KOG1128|consen 586 HWQ 588 (777)
T ss_pred CCe
Confidence 443
No 178
>PLN02789 farnesyltranstransferase
Probab=86.59 E-value=18 Score=30.24 Aligned_cols=125 Identities=6% Similarity=-0.054 Sum_probs=83.1
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRID-SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~-~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
-+-..+. ..++.++|..+.++.. .| +...|+.-=..+...| ++++++..++++.+.+-+ +...|+.---.+.+
T Consensus 42 ~~ra~l~--~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYA--SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 3444555 7788999999998876 33 3445654444455556 678999999998775433 22345433333334
Q ss_pred cCch----hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHH
Q 042210 100 DIAG----SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELI 151 (230)
Q Consensus 100 ~~~~----a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~l 151 (230)
.|.. ...+.+.+. +...|+..--.+.+.|+++++.+.++++.+ .|...|+.-
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 4432 344444444 788888888888999999999999999876 466677754
No 179
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.51 E-value=5.6 Score=27.13 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHHH--HHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 3 QLKQIHSQTIKLGLLTKPHCPKQT--RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~~~ll--~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
+|..+-+++...+-. ..+..+| ..++ ..|++++|..+.+....||...|-+| +-.+.|-.++...-+.+|..
T Consensus 23 EA~tIAdwL~~~~~~--~E~v~lIRlsSLm--NrG~Yq~Al~l~~~~~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 23 EANTIADWLHLKGES--EEAVQLIRLSSLM--NRGDYQSALQLGNKLCYPDLEPWLAL--CEWRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHhcCCch--HHHHHHHHHHHHH--ccchHHHHHHhcCCCCCchHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 455556665555321 1114444 4455 88999999999999889999988877 55667777777777777777
Q ss_pred CCC
Q 042210 81 SDV 83 (230)
Q Consensus 81 ~g~ 83 (230)
+|-
T Consensus 97 sg~ 99 (115)
T TIGR02508 97 SGD 99 (115)
T ss_pred CCC
Confidence 664
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.47 E-value=11 Score=30.92 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=78.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCcccHHHHHHHhhhc--Cch---hhHHHhhhh-----hHhHHH
Q 042210 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRD--IAG---SLEKSCIVM-----RVFVQN 118 (230)
Q Consensus 50 ~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~~~~--~~~---a~~~~~~~~-----~~~~~~ 118 (230)
-|...|-.|=..|.+.|+...|..-|..-.+ .|=.|+. +..+-.++... +.. +.+++++.. |+..-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4677899999999999999999999988544 4554543 44444433333 333 888998888 777777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHHHh
Q 042210 119 ALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRIKA 155 (230)
Q Consensus 119 ~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~ 155 (230)
-|--.+...|++.+|...|+.|-+ |....|..+|...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 777889999999999999999987 6667777777643
No 181
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=86.40 E-value=0.98 Score=32.36 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 042210 66 DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~ 98 (230)
|.-..|..+|+.|..+|-+||. |+.|+..+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 4456789999999999999995 889988763
No 182
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.07 E-value=22 Score=32.07 Aligned_cols=138 Identities=5% Similarity=-0.059 Sum_probs=87.9
Q ss_pred CCCCCcH-HHHHHHHhhhccC-ChHHHHHHHHhcC--CCC--hhhHHHHHHHHHhcCChhHHHHHHH--------HHHhC
Q 042210 16 LLTKPHC-PKQTRYLLLYEKG-DLKYECKVFRKIT--QPS--VFLWNTMIKGYSRIDSHKNGVLMYL--------DLLKS 81 (230)
Q Consensus 16 ~~~~~~~-~~ll~~~~~~~~~-~~~~a~~~~~~m~--~~~--~~~yn~li~~~~~~~~~~~a~~~~~--------~M~~~ 81 (230)
..|...+ +.+...+- ... ...++.+++.... .|+ .++--.++.-....|+++.|.+++. .+..-
T Consensus 336 ~~p~~~~~~ll~~~t~--~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 336 MSPESLFPILLQEATK--VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred cCchHHHHHHHHHHHH--HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 3455555 44554444 222 3566666666654 222 3344556666777899999999999 66666
Q ss_pred CCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CC
Q 042210 82 DVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------------RVFVQNALISTYCLCGEVDMARGIFYMSCE---DD 144 (230)
Q Consensus 82 g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~ 144 (230)
+-.|..+.+ +...+.+.++. +.++++... -..++.-+.+.--+.|+.++|..+++++.+ +|
T Consensus 414 ~~~P~~V~a--iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 414 KHLPGTVGA--IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred ccChhHHHH--HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 777766554 55555555544 666655555 233444445555678999999999999986 56
Q ss_pred hhhhHHHHHHhhh
Q 042210 145 DGLHELIRIKAVD 157 (230)
Q Consensus 145 ~~t~n~li~~~~~ 157 (230)
.-+--.++.+|+.
T Consensus 492 ~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 492 TDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHHh
Confidence 6666677777764
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=85.62 E-value=15 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHhhccC
Q 042210 124 YCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 124 y~~~g~~~~A~~vf~~m~~ 142 (230)
+...|++..|.+.|++..+
T Consensus 206 ~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 206 HLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHGT
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 3335667777777776554
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.80 E-value=2.4 Score=25.93 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRID-SHKNGVLMYLDLL 79 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~-~~~~a~~~~~~M~ 79 (230)
+=..+. +.|++++|...|++.. +.+...|..+=.+|.+.| ++++|...|+.-.
T Consensus 9 ~g~~~~--~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 9 LGQIYF--QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHH--HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 334555 7888888888888765 334556777777777788 6888888887643
No 185
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.80 E-value=14 Score=32.37 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=47.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
+.+++.+- +.|..+.|.++-..- + .=.....+.|+++.|.++-++. ++...|..|-+...+.|+
T Consensus 299 ~~i~~fL~--~~G~~e~AL~~~~D~---~-----~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 299 QSIARFLE--KKGYPELALQFVTDP---D-----HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHH--HTT-HHHHHHHSS-H---H-----HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHH--HCCCHHHHHhhcCCh---H-----HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCC
Confidence 66677776 777777777764321 1 1122233455555555553222 133355555555555555
Q ss_pred h--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 103 G--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 103 ~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
+ |+..+.... -|..|+=.|.-.|+.++-.++-+.
T Consensus 363 ~~lAe~c~~k~~---d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 363 IELAEECYQKAK---DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHHHHCT----HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhc---CccccHHHHHHhCCHHHHHHHHHH
Confidence 5 555555333 233444445555555555544443
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.30 E-value=4.5 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+|..+=..|.+.|++++|...|++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444455555555554443
No 187
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.01 E-value=17 Score=26.97 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=50.3
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhh
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTR 99 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~ 99 (230)
..+. +.|++++|...|++.. .|+ ...|..+-..+.+.|++++|...+++..+. .|+ ...+..+-..+..
T Consensus 43 ~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 43 MSAQ--ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHH--HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 4455 8899999999999875 232 357888888999999999999999987663 332 3334444444444
Q ss_pred cCc
Q 042210 100 DIA 102 (230)
Q Consensus 100 ~~~ 102 (230)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 444
No 188
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.14 E-value=2.9 Score=20.45 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 116 VQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
....+-..+...|++++|++++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345567788999999999998864
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.96 E-value=3.9 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=10.2
Q ss_pred HHHhcCCHHHHHHHHhhccC
Q 042210 123 TYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 123 ~y~~~g~~~~A~~vf~~m~~ 142 (230)
.|.+.+++++|.++++.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~ 23 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE 23 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH
Confidence 44455555555555555443
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.83 E-value=28 Score=32.32 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=75.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCcccHHHHHHHhhhcC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDI 101 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~~~~~ 101 (230)
+.-+..+. .-|+-.+|.++-.+.+-||-..|--=+.+++..+++++-+.+=+.++. -|. -....+|.+.|
T Consensus 688 ~dTv~~li--~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy-------~PFVe~c~~~~ 758 (829)
T KOG2280|consen 688 HDTVTTLI--LIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGY-------LPFVEACLKQG 758 (829)
T ss_pred HHHHHHHH--HccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCc-------hhHHHHHHhcc
Confidence 66667777 888899999999999988888888888889988888877666555543 233 33677788888
Q ss_pred ch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 102 AG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 102 ~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
+. |...+....+.. -.+.+|.++|++.+|.++--+
T Consensus 759 n~~EA~KYiprv~~l~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGLQ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccCChH---HHHHHHHHhccHHHHHHHHHH
Confidence 77 555555444221 467888888888888776443
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.82 E-value=3 Score=22.14 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+|+.|=..|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788899999999999999884
No 192
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.71 E-value=10 Score=26.19 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHH--HHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQT--RYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll--~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
++|..+.+++...+- ..- ..+| ..++ +.|+++.|...=.....||...|-+| +-.+.|-.+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~~---~~E~v~lIr~~sLm--NrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEGE---MEEVVALIRLSSLM--NRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTT---THHHHHHHHHHHHH--HTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc---HHHHHHHHHHHHHH--hhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 467778888877754 222 4444 4455 88999999555555668999998777 667788888888888877
Q ss_pred HhCC
Q 042210 79 LKSD 82 (230)
Q Consensus 79 ~~~g 82 (230)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 193
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.60 E-value=3 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 578889999999999999999998754
No 194
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=33 Score=29.80 Aligned_cols=151 Identities=8% Similarity=-0.062 Sum_probs=97.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCcccHHHH-HHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFL-FKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~-M~~~g~~p~~~t~~~l-l~~~ 97 (230)
.-++.+-.+-..++++.|.=-|...+ +.+...|.-|+.+|...|.+.+|.-.-++ |+.-+ .+..+.+.+ -..|
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhhhhhcceee
Confidence 34444333227789999988888765 56788999999999999999998876554 33222 233344333 1233
Q ss_pred h--hcCch-hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHH-------------H
Q 042210 98 T--RDIAG-SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRI-------------K 154 (230)
Q Consensus 98 ~--~~~~~-a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~-------------~ 154 (230)
. ..++- |+.+++.-. -.-.-+.+-..+...|..+++..+++.--. ||....+.+-. .
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 3 33333 777777665 333445666778888999999999987653 78777666522 1
Q ss_pred hh--------hcchhhhHHHHHHHhhhcCc
Q 042210 155 AV--------DDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 155 ~~--------~~~~~~~~~~m~~~~~~~p~ 176 (230)
|. .+.+++-.+.|.+++ -.||
T Consensus 494 y~~ALr~dP~~~~sl~Gl~~lEK~~-~~~D 522 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLRLLEKSD-DESD 522 (564)
T ss_pred HHHHHhcCccchHHHHHHHHHHhcc-CCCC
Confidence 11 235667777777777 3454
No 195
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.23 E-value=6.4 Score=26.61 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=19.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
.|+...-++.+.+|-+.+|+..|.++|+-.+
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555556666666666666666666666554
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.58 E-value=32 Score=31.68 Aligned_cols=65 Identities=11% Similarity=-0.016 Sum_probs=46.7
Q ss_pred hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChh---------------hhHHHHHHhhhcchhhhHHH
Q 042210 104 SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDG---------------LHELIRIKAVDDDLHELFPE 166 (230)
Q Consensus 104 a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~---------------t~n~li~~~~~~~~~~~~~~ 166 (230)
|.++|..|.|. .+++......+++++|.++-++.++ ||+. .--+.++++...+|.++.+.
T Consensus 766 AaeIF~k~gD~---ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 766 AAEIFLKMGDL---KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHHHHhccH---HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 77777777644 3567888899999999999998887 5543 12234556666788888887
Q ss_pred HHHHh
Q 042210 167 YLVQM 171 (230)
Q Consensus 167 m~~~~ 171 (230)
+....
T Consensus 843 Ltnna 847 (1081)
T KOG1538|consen 843 LTNNA 847 (1081)
T ss_pred hhhhh
Confidence 77665
No 197
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.75 E-value=14 Score=30.18 Aligned_cols=106 Identities=10% Similarity=0.024 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHHHh-CCCCCCcccHHHHHHHhhhcCch----hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHH
Q 042210 67 SHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAG----SLEKSCIVM-------RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 67 ~~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~~~~~~~----a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~ 134 (230)
.+.+|+.+|+...- ..+--|..+...+++......+. -.++.+.+. +.-+.-+.|..+++.+++++-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566777664322 33555677777777777663333 233333333 6777788899999999999999
Q ss_pred HHHhhccC-----CChhhhHHHHHHhhhcchhhhHHHHHHHhh
Q 042210 135 GIFYMSCE-----DDDGLHELIRIKAVDDDLHELFPEYLVQML 172 (230)
Q Consensus 135 ~vf~~m~~-----~~~~t~n~li~~~~~~~~~~~~~~m~~~~~ 172 (230)
++++.-.. .|...|..+|..-...+..++.+++..+|-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 99987654 477899999999999999999999999983
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.72 E-value=46 Score=29.87 Aligned_cols=44 Identities=11% Similarity=-0.143 Sum_probs=25.6
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHHHhh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRIKAV 156 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~~ 156 (230)
+...|.++--.+...|++++|...|++..+ |+...|..+-..+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~ 464 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYE 464 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345555554444456777777777777664 55555555544443
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.60 E-value=24 Score=28.46 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCcccHHHHHHHhhhcCch--hhHHHhhhh--------hHhHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM--------RVFVQNA 119 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~--------~~~~~~~ 119 (230)
.|+.-+..| +.|++..|..-|....+. -..||..-| |-.++...|+. |..+|..+. -+...=-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 588888655 557799999999997764 356777666 77788888887 666666665 3444555
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC--CCh
Q 042210 120 LISTYCLCGEVDMARGIFYMSCE--DDD 145 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~--~~~ 145 (230)
|-....+.|+.|+|+.+|++..+ |+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 56677788889999988888776 554
No 200
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.37 E-value=23 Score=26.30 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=48.8
Q ss_pred HHHHHHHhhh-ccCChHHHHHHHHhcC--CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042210 23 PKQTRYLLLY-EKGDLKYECKVFRKIT--QPSV---FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96 (230)
Q Consensus 23 ~~ll~~~~~~-~~~~~~~a~~~~~~m~--~~~~---~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~ 96 (230)
+.||+..... +.++.+++..+++.++ .|.. .++..++ +.+.|++.+|.++|++....+ |...--..|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~ 86 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHH
Confidence 5555544422 7889999999999987 5543 4555553 567899999999999987654 332233445444
Q ss_pred hhh
Q 042210 97 FTR 99 (230)
Q Consensus 97 ~~~ 99 (230)
|-.
T Consensus 87 CL~ 89 (160)
T PF09613_consen 87 CLY 89 (160)
T ss_pred HHH
Confidence 443
No 201
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.32 E-value=18 Score=27.24 Aligned_cols=86 Identities=9% Similarity=-0.084 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHhhhcCch--hhHHHhhhh-------hH------hH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY--TFPFLFKGFTRDIAG--SLEKSCIVM-------RV------FV 116 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~--t~~~ll~~~~~~~~~--a~~~~~~~~-------~~------~~ 116 (230)
.+..+-.-|.+.|+.+.|++.|.++......|... .+-.+|+.+...+++ +........ |. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56777778888888888888888877765444322 344556666666666 333322222 22 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|..|-. ...|++.+|-+.|-+..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHccC
Confidence 222222 23567777777776654
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.66 E-value=13 Score=35.09 Aligned_cols=68 Identities=10% Similarity=-0.059 Sum_probs=46.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 65 IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 65 ~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.|+.+.|+.+|..- ..|-++++..|-.|++ |.++-++-.|....=.|-..|-.-|++.+|...|.+-.
T Consensus 925 ~GemdaAl~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 925 VGEMDAALSFYSSA---------KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccchHHHHHHHHHh---------hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45556666655442 2345566666666776 66666666677766777888888888888888887654
No 203
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.54 E-value=30 Score=28.36 Aligned_cols=104 Identities=7% Similarity=-0.098 Sum_probs=72.7
Q ss_pred ChHHHHHHHHhcC-----CCChhhHHHHHHHHHh-c-CChhHHHHHHHHHHh-CCCCCCcccHHHHHHHhhhcCch--hh
Q 042210 36 DLKYECKVFRKIT-----QPSVFLWNTMIKGYSR-I-DSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAG--SL 105 (230)
Q Consensus 36 ~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~-~-~~~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~~~~~~~--a~ 105 (230)
.+.+|..+|+... -.|..+-..+++.... . ..+..-.++.+-+.. .|-.++..+..++|+.+++.+++ -.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 4556666666332 1234444445555444 1 133334444444443 35678888999999999999999 77
Q ss_pred HHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 106 EKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 106 ~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
++|.... |...|..+|..-.+.|+..-.+++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8887776 999999999999999999999998874
No 204
>PHA03100 ankyrin repeat protein; Provisional
Probab=76.66 E-value=21 Score=31.14 Aligned_cols=130 Identities=8% Similarity=-0.075 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHH-----HhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHH-hcCChhHHHH
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRY-----LLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYS-RIDSHKNGVL 73 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~-----~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~-~~~~~~~a~~ 73 (230)
++.+.+.+.|..|+... ...+.. .. ..|+.+-+..+++.-. .+|....+.+..+.. ..|+. +
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~--~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~ 122 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYN--LTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----S 122 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH--hhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----H
Confidence 45667777787766543 345555 55 6667666666665533 233333444443332 34443 3
Q ss_pred HHHHHHhCCCCCCcc---cHHHHHHHhhhcC--ch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 74 MYLDLLKSDVRRDNY---TFPFLFKGFTRDI--AG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~---t~~~ll~~~~~~~--~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+++.+.+.|..++.. -.+ .+...++.| +. .+.+.+.-. +. ...+.+...++.|+.+-++-+++.=.
T Consensus 123 iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga 200 (480)
T PHA03100 123 IVEYLLDNGANVNIKNSDGEN-LLHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDNGA 200 (480)
T ss_pred HHHHHHHcCCCCCccCCCCCc-HHHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 444445556554332 223 344444445 44 333333222 21 22334566667777777777776544
Q ss_pred CC
Q 042210 142 ED 143 (230)
Q Consensus 142 ~~ 143 (230)
.+
T Consensus 201 ~~ 202 (480)
T PHA03100 201 DI 202 (480)
T ss_pred Cc
Confidence 33
No 205
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=76.28 E-value=11 Score=30.99 Aligned_cols=82 Identities=10% Similarity=0.141 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HH--HHHHHhhhccC----ChHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCC
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PK--QTRYLLLYEKG----DLKYECKVFRKIT-------QPSVFLWNTMIKGYSRIDS 67 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~--ll~~~~~~~~~----~~~~a~~~~~~m~-------~~~~~~yn~li~~~~~~~~ 67 (230)
+....+++.|++.|++-+..+ -+ +|.... ... ...+|..+++.|+ .++-.++.+++.. ...+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~--~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEE--EKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 467789999999999888776 32 333332 222 4678889999997 4566677777765 3333
Q ss_pred h----hHHHHHHHHHHhCCCCCCc
Q 042210 68 H----KNGVLMYLDLLKSDVRRDN 87 (230)
Q Consensus 68 ~----~~a~~~~~~M~~~g~~p~~ 87 (230)
+ +.+...|+.+...|+..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn 178 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGN 178 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3 3566777777777877643
No 206
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=76.17 E-value=61 Score=30.29 Aligned_cols=192 Identities=10% Similarity=-0.062 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHH-HhC
Q 042210 7 IHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKS 81 (230)
Q Consensus 7 ~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M-~~~ 81 (230)
.+.++....+..|+.. ..+.-+.. +.|+++.+-+.|++.. --....|+.+-..|...|.-..|..+.++- +..
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~--~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALS--RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 3445555567778877 88888888 9999999999999865 344567888888999999988999998874 333
Q ss_pred CCCCCcccHHHHHHHhhhcCch-------hhHHHhhhh------hHhHHHHHHHHHHh-----------cCCHHHHHHHH
Q 042210 82 DVRRDNYTFPFLFKGFTRDIAG-------SLEKSCIVM------RVFVQNALISTYCL-----------CGEVDMARGIF 137 (230)
Q Consensus 82 g~~p~~~t~~~ll~~~~~~~~~-------a~~~~~~~~------~~~~~~~li~~y~~-----------~g~~~~A~~vf 137 (230)
.-++|...+-..-+.|.+.-.. |.++.+... ....|-.+=-+|+. .....++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3333444443334445444222 333333222 33334333333431 22234455556
Q ss_pred hhccC-----CChhhhHHHHHHhh--hcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccc
Q 042210 138 YMSCE-----DDDGLHELIRIKAV--DDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEG 210 (230)
Q Consensus 138 ~~m~~-----~~~~t~n~li~~~~--~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~ 210 (230)
++..+ |+++-|-++=-+-. -..|++..++...-. ..-+...|.-|.+ .....+++..|+.+.+
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLAL---------vlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLAL---------VLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHH---------HHhhhhhhHHHHHHHH
Confidence 65533 55555544433322 246666666666553 2233344444433 2334456666655544
No 207
>PLN02789 farnesyltranstransferase
Probab=75.48 E-value=47 Score=27.73 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccC-ChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCh--hHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKG-DLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSH--KNGVLM 74 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~-~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~--~~a~~~ 74 (230)
.|..+.++.++. .|+..+ +.-=..+. +.| +++++...++++. ..+...|+---..+.+.|+. ++++.+
T Consensus 55 rAL~lt~~aI~l--nP~~ytaW~~R~~iL~--~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 55 RALDLTADVIRL--NPGNYTVWHFRRLCLE--ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred HHHHHHHHHHHH--CchhHHHHHHHHHHHH--HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 344555544443 344433 22222333 444 4566666666554 33334455332223333332 455666
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHH
Q 042210 75 YLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTY 124 (230)
Q Consensus 75 ~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y 124 (230)
++.+.+..-+ |...|+-.-.++.+.|++ +.+.++.+. +...|+..--.+
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 6555543221 344555555555555555 555555554 444555444333
No 208
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.13 E-value=14 Score=24.95 Aligned_cols=43 Identities=7% Similarity=-0.106 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 70 NGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 70 ~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
+..+-++.+....+.|+.....+.+++|-|.+++ |-++++.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445556666678888888888888888888888 777777665
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=74.94 E-value=55 Score=28.31 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=108.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCcccHHHHHH--
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSR--IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-- 95 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~--~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~-- 95 (230)
.+|-.++.....|+-..|+++-.+-. ..|....--++.+-.. .|+.+.|.+-|+.|... ..|--.=++
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgL 160 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGL 160 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHH
Confidence 34444554346678888888776654 4454443334444433 69999999999999874 222111122
Q ss_pred --HhhhcCch------hhHHHhhhh-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----CChh--hhHHHHHHhhh--
Q 042210 96 --GFTRDIAG------SLEKSCIVM-RVFVQNALISTYCLCGEVDMARGIFYMSCE-----DDDG--LHELIRIKAVD-- 157 (230)
Q Consensus 96 --~~~~~~~~------a~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-----~~~~--t~n~li~~~~~-- 157 (230)
.--+.|+- +..-..... -...+.+.+...|..|+++.|.++.+.-++ ||.. .=..|+.+...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22234443 222333333 677788899999999999999999997654 4442 22234433221
Q ss_pred --cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCCCccc
Q 042210 158 --DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQDDMS 221 (230)
Q Consensus 158 --~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~~~~ 221 (230)
.+--.--..-...-+..||.+-...... .++.+.|++.+|..|++.+=+..-+|++
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AA--------ralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAA--------RALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHH--------HHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 1111111111222335677554333111 2778899999999999888887777763
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.85 E-value=17 Score=31.77 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=57.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------CCCCc-
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKS-D-------VRRDN- 87 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g-------~~p~~- 87 (230)
+.+=.+|. +.|++++|...|++.. .|+. ..|..+-.+|.+.|+.++|...+++-.+. + -.||.
T Consensus 79 ~NLG~AL~--~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~DpdL~ 156 (453)
T PLN03098 79 VNLGLSLF--SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILNDPDLA 156 (453)
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHhCcchh
Confidence 66777788 9999999999999854 6664 35888999999999999999999886653 1 11211
Q ss_pred -----ccHHHHHHHhhhcCc
Q 042210 88 -----YTFPFLFKGFTRDIA 102 (230)
Q Consensus 88 -----~t~~~ll~~~~~~~~ 102 (230)
..|..++....+.|.
T Consensus 157 plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 157 PFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hhcccHHHHHHHHHHHHhCC
Confidence 245666666666664
No 211
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.80 E-value=45 Score=27.29 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhcC----CCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC-CCChhhHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGL----LTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT-QPSVFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~----~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
+.|.+.|+.....+- ..++.. ..++.... +.|..+.-..+++... .++...-+.++.+.+...+++...+++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~--~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGV--RNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHT--TS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHH--HHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 456777777776532 345556 77777777 8888777777777766 456677889999999999998888888
Q ss_pred HHHHhCC-CCCCcccHHHHHHHhhhcC
Q 042210 76 LDLLKSD-VRRDNYTFPFLFKGFTRDI 101 (230)
Q Consensus 76 ~~M~~~g-~~p~~~t~~~ll~~~~~~~ 101 (230)
+.....+ +++.. ...++.++...+
T Consensus 225 ~~~l~~~~v~~~d--~~~~~~~~~~~~ 249 (324)
T PF11838_consen 225 DLLLSNDKVRSQD--IRYVLAGLASSN 249 (324)
T ss_dssp HHHHCTSTS-TTT--HHHHHHHHH-CS
T ss_pred HHHcCCcccccHH--HHHHHHHHhcCC
Confidence 8877765 55443 344555555333
No 212
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.24 E-value=11 Score=25.74 Aligned_cols=34 Identities=6% Similarity=-0.098 Sum_probs=14.2
Q ss_pred HhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 79 LKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 79 ~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
-...+.|+.....+.+++|-|.+++ |.++++.++
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344455555555555555555444 444444443
No 213
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.05 E-value=19 Score=32.01 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhhh-----hHhHHHHHHHHHHhc
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM-----RVFVQNALISTYCLC 127 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~-----~~~~~~~li~~y~~~ 127 (230)
..-++|.-++.+-.+.-+..+-.+|...|- +...|-.++.+|...++- -..+|+.+. |++.---|..-|-+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKENGNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhcCchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 455688889998888888899999988664 556788999999999887 777888665 67766777777777
Q ss_pred CCHHHHHHHHhhccC
Q 042210 128 GEVDMARGIFYMSCE 142 (230)
Q Consensus 128 g~~~~A~~vf~~m~~ 142 (230)
++..++...|.....
T Consensus 145 ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 IKKSKAAEFFGKALY 159 (711)
T ss_pred hchhhHHHHHHHHHH
Confidence 888888888876653
No 214
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.45 E-value=56 Score=27.89 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhh---hHHHHHHhhhcchhhhHHHHHHHhhhcCch
Q 042210 121 ISTYCLCGEVDMARGIFYMSCEDDDGL---HELIRIKAVDDDLHELFPEYLVQMLALPDT 177 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~~~~~t---~n~li~~~~~~~~~~~~~~m~~~~~~~p~~ 177 (230)
+...+..|+.+-++.+++.-..++... .++.+......+..+..+-+.+.| ..|+.
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g-ad~n~ 230 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG-ADCNI 230 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC-cCcch
Confidence 334455667766666666544444332 123333333455566777777766 55543
No 215
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.22 E-value=2.8 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHhhccC
Q 042210 121 ISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-..|.+.|+.++|.+.|++..+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3466778999999999998765
No 216
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=72.68 E-value=38 Score=27.48 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=63.8
Q ss_pred HHHHhhhccCChHHHHHHHHhcC-------CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-CCcccHH
Q 042210 26 TRYLLLYEKGDLKYECKVFRKIT-------QPS--VFLWNTMIKGYSRIDSHKNGVLMYLDLLK----SDVR-RDNYTFP 91 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m~-------~~~--~~~yn~li~~~~~~~~~~~a~~~~~~M~~----~g~~-p~~~t~~ 91 (230)
-..|- ..|++++|-+.|...- .+. ...|.....+|-+. ++++|...+++-.. .|-. --...+.
T Consensus 42 a~~fk--~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 42 ANCFK--LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHH--HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHH--HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34555 6778888777776542 111 12344444444443 77777766665432 2211 1122444
Q ss_pred HHHHHhhhc-Cch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 92 FLFKGFTRD-IAG--SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 92 ~ll~~~~~~-~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+-..|-+. |++ |.+.+.... -..++..+...+.+.|++++|.++|++...
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555555 565 555555544 345566778899999999999999998753
No 217
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.22 E-value=7.9 Score=26.46 Aligned_cols=57 Identities=7% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042210 39 YECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96 (230)
Q Consensus 39 ~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~ 96 (230)
+.++-++.+- .|+.....+.+.+|-|.+++..|.++|+-.+.. +.+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 3444444433 566667777777777777777777777776543 11222256666553
No 218
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.64 E-value=26 Score=23.15 Aligned_cols=65 Identities=11% Similarity=0.220 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHH
Q 042210 4 LKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 4 a~~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a 71 (230)
+.++++.+.+.|+-.......+-..-. +.|+.+.|+++++.+. ...--|+.+++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~--~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATE--NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcc--ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 345666666666332221133444334 5567777777777777 5555677777777766654444
No 219
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.38 E-value=50 Score=27.22 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=59.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--h-hHHHhhhh----hHhHHHHHHHHHHhcCCHHHHH
Q 042210 63 SRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--S-LEKSCIVM----RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 63 ~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a-~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~ 134 (230)
.+.+++++|+..|.+-++ +.| |.+-|.-=-.+|.+.|.. | ...-..+. ....|..|=-+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 346888888888888655 445 555566667788888876 2 22222222 5667777778899999999999
Q ss_pred HHHhhccC--CChhhhHHH
Q 042210 135 GIFYMSCE--DDDGLHELI 151 (230)
Q Consensus 135 ~vf~~m~~--~~~~t~n~l 151 (230)
+-|.+--+ |+-.+|-.=
T Consensus 170 ~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHhhhccCCCcHHHHHH
Confidence 99887664 766655443
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=71.18 E-value=11 Score=20.93 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667778899999999999999997764
No 221
>PRK04841 transcriptional regulator MalT; Provisional
Probab=71.10 E-value=82 Score=30.08 Aligned_cols=114 Identities=7% Similarity=-0.071 Sum_probs=65.5
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC-------CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC--C-Ccc
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT-------QPS--VFLWNTMIKGYSRIDSHKNGVLMYLDLLK----SDVR--R-DNY 88 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~-------~~~--~~~yn~li~~~~~~~~~~~a~~~~~~M~~----~g~~--p-~~~ 88 (230)
+-..+. ..|+++.|...+.+.. .+. ...++.+-..+...|++++|...+++-.. .+.. | ...
T Consensus 497 lg~~~~--~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 497 LGEVHH--CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 334455 7888888888887654 111 12334445556678888888888877543 2221 1 112
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh----------hHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM----------RVFVQNALISTYCLCGEVDMARGIFYMS 140 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~----------~~~~~~~li~~y~~~g~~~~A~~vf~~m 140 (230)
.+..+-..+...|++ |...+.... ....+..+-..+...|+.++|.+.+++.
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233333445556777 555555443 1233334455677788888888777765
No 222
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.39 E-value=35 Score=25.73 Aligned_cols=57 Identities=9% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPS------VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~------~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
..+-+-|. +.|+.+.|.+.+.++.... ...+-.+|......+++..+.....+-...
T Consensus 40 ~~l~~~~~--~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 40 EDLADHYC--KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHH--HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56778889 9999999999999987332 234667788888889999999888776554
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.93 E-value=5.1 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARG 135 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~ 135 (230)
+...|+.|=..|...|++++|++
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 78889999999999999998863
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.79 E-value=70 Score=28.21 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=71.7
Q ss_pred ccCChHHHHHHHHhcC-----CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc--C
Q 042210 33 EKGDLKYECKVFRKIT-----QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--I 101 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~-----~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~--~ 101 (230)
+.++..+|+++|.+.- .|. -+.-+-+|++|-.. +++.......+..+. -| ...|-.++.+...- +
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 7788999999998875 121 12356777777663 445544455444432 22 33566666654432 2
Q ss_pred ch--hhHHHhhhh--------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--------CChhhhHH
Q 042210 102 AG--SLEKSCIVM--------------------RVFVQNALISTYCLCGEVDMARGIFYMSCE--------DDDGLHEL 150 (230)
Q Consensus 102 ~~--a~~~~~~~~--------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--------~~~~t~n~ 150 (230)
.. |.+.+..-. |.+.=+..++.+.+.|++++++.++++|.. -|+.+||-
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 22 333322222 555557788899999999999999999875 47778887
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=69.77 E-value=71 Score=28.06 Aligned_cols=60 Identities=5% Similarity=-0.107 Sum_probs=46.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc----ccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN----YTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~----~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
+...|+.+=.+|.+.|++++|...|++-.+ +.|+. .+|..+-.+|...|+. |.+.+....
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345788899999999999999999988544 34664 3589999999999998 555555443
No 226
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=70 Score=29.29 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=72.9
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhh
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIV 111 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~ 111 (230)
+.|+++.|.++..+. .+..-|..|=++..+.+++..|.+-|.. ...|..|+-.+...|+- +...+...
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~---------a~d~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLR---------ARDLGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHh---------hcchhhhhhhhhhcCChhHHHHHHHH
Confidence 667777777765554 4556799999999999999999998876 33477788888888887 55444444
Q ss_pred h-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 112 M-RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 112 ~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
. ..-..|...-+|-..|+++++.+++.+-.+
T Consensus 718 ~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 718 AKKQGKNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHhhcccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 4 444556667788899999999999987643
No 227
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=69.44 E-value=70 Score=30.47 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=84.8
Q ss_pred ccCChHHHHHHHHhcC--CCChhhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT--QPSVFLWNTMIKGYS--RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~--~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
..+++.+|....+++. -|| ..|...+.++. +.|+.++|..+++.....+.. |..|...+-.+|-+.++. +..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 5667777877777754 344 34666666664 579999999888887665555 888999999999999988 888
Q ss_pred HHhhhh----hHhHHHHHHHHHHhcCCHHHHHH----HHhhccCCChhhhHHH
Q 042210 107 KSCIVM----RVFVQNALISTYCLCGEVDMARG----IFYMSCEDDDGLHELI 151 (230)
Q Consensus 107 ~~~~~~----~~~~~~~li~~y~~~g~~~~A~~----vf~~m~~~~~~t~n~l 151 (230)
+++... +......+..+|.|-+.+.+-.+ ++...++.--.-|+++
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 888777 66667778888999888876554 4444444444556655
No 228
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=69.35 E-value=97 Score=28.79 Aligned_cols=52 Identities=13% Similarity=-0.121 Sum_probs=29.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhhcchhhhH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVDDDLHELF 164 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~~~~~~~~ 164 (230)
.+-.|-.|...=-+.|.+..|+.+|+.-.- | |...|-..|..-.+.+..+..
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence 455555566666666777777777775442 3 455666666544443333333
No 229
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=68.91 E-value=32 Score=30.86 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=33.1
Q ss_pred ccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
..|++++|...+++.. .|+...|..+-..+...|++++|.+.|++-
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5577777777777765 566666777777777777777777777663
No 230
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.84 E-value=35 Score=23.45 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 599999999999999999999999877
No 231
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=68.75 E-value=47 Score=24.90 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=75.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhh-hHh-HHHHHHHHHHh
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM-RVF-VQNALISTYCL 126 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~-~~~-~~~~li~~y~~ 126 (230)
.|+...|..+|+.+.+.|.+ ..+..+.+.++-||+......+-........+.++=-+|. ... .+..+++.+-.
T Consensus 26 ~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~ 101 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLS 101 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 67777899999999998874 4566778888888888777666555443333333333333 333 56677888999
Q ss_pred cCCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhH
Q 042210 127 CGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELF 164 (230)
Q Consensus 127 ~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~ 164 (230)
.|++-+|.+.......-+.+....++.+-...+...+|
T Consensus 102 ~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 102 KGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred CCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 99999999999886555555555566665544333333
No 232
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.82 E-value=24 Score=28.84 Aligned_cols=57 Identities=11% Similarity=0.000 Sum_probs=34.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhh----cchhhhHHHHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVD----DDLHELFPEYLV 169 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~----~~~~~~~~~m~~ 169 (230)
-..++..++..+..+|+.+.+...+++... -|-..|-.+|.+|.. .++++.++.+.+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 355566677777777777777776666654 244566666665543 345555555554
No 233
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.46 E-value=16 Score=21.02 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=27.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042210 61 GYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96 (230)
Q Consensus 61 ~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~ 96 (230)
...+.|-..++..++++|++.|+.-+...|..+++-
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 445567888899999999999988877777776653
No 234
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.18 E-value=25 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=18.6
Q ss_pred HHhhhcCch-hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 95 KGFTRDIAG-SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 95 ~~~~~~~~~-a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
.-..+.|+- |.+.|-.+. ++...-+|-..|. ..+.+++..++.
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~ 164 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLL 164 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 334444444 444444444 3444444433333 344444444444
No 235
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=66.34 E-value=1.1e+02 Score=28.40 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=94.1
Q ss_pred CCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH
Q 042210 16 LLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90 (230)
Q Consensus 16 ~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~ 90 (230)
..|+..- -.+...=- +.|++-+|+.+++.-. +.|...|-..|..=.+.|+.+.|..+..+-.+. ++-+..-|
T Consensus 714 ~cP~~ipLWllLakleE--k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LW 790 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEE--KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLW 790 (913)
T ss_pred cCCCCchHHHHHHHHHH--HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhH
Confidence 3455544 44444445 7889999999999876 456788999999999999999998887664332 33344456
Q ss_pred HHHHHHhhhcCch--hhHHHhhhh-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHHHHHHhhh
Q 042210 91 PFLFKGFTRDIAG--SLEKSCIVM-RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGLHELIRIKAVD 157 (230)
Q Consensus 91 ~~ll~~~~~~~~~--a~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~li~~~~~ 157 (230)
.--|....+.++- ....++... |+.+.-++-..+.....+++|++-|++-.. || --+|--+..-+..
T Consensus 791 aEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 6666655554443 333333333 777777777778888899999999998775 43 3466666554443
No 236
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.41 E-value=75 Score=25.68 Aligned_cols=84 Identities=7% Similarity=-0.053 Sum_probs=53.7
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC-C---CCCCcccHHHHH
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT--QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKS-D---VRRDNYTFPFLF 94 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~--~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g---~~p~~~t~~~ll 94 (230)
.+..+. +.|+.++|...|+.+. -|+. ..+--+-..|...|++++|...|+..... . ..|+. +-.+.
T Consensus 149 A~~l~~--~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA--l~klg 224 (263)
T PRK10803 149 AIALVQ--DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA--MFKVG 224 (263)
T ss_pred HHHHHH--hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH--HHHHH
Confidence 334445 7799999999999876 3432 24445566788899999999999998653 1 22222 22234
Q ss_pred HHhhhcCch--hhHHHhhhh
Q 042210 95 KGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 95 ~~~~~~~~~--a~~~~~~~~ 112 (230)
..+...|+. |...++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 445566666 655555443
No 237
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=63.48 E-value=74 Score=25.29 Aligned_cols=46 Identities=11% Similarity=-0.041 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC--CChhhhH----HHHHHhhhcchhhhHH
Q 042210 120 LISTYCLCGEVDMARGIFYMSCE--DDDGLHE----LIRIKAVDDDLHELFP 165 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n----~li~~~~~~~~~~~~~ 165 (230)
.-..|-+.|.+..|..=|+.+.+ |++...- .|+.+|..-+..+.++
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 34568888888888888887776 5554322 3455665443333333
No 238
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.31 E-value=11 Score=21.33 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC
Q 042210 120 LISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
|-.+|.+.|+.+.|++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 55789999999999999998764
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=62.98 E-value=56 Score=23.76 Aligned_cols=67 Identities=10% Similarity=0.268 Sum_probs=48.7
Q ss_pred ccCChHHHHHHHHhcCC--C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHhhhc
Q 042210 33 EKGDLKYECKVFRKITQ--P----SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGFTRD 100 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~--~----~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~~~t~~~ll~~~~~~ 100 (230)
+.|+.++|.+.|+.+.. | ....-=-++.+|.+.++++.|...+++..+. .-.|+ ..|...+.|++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 78999999999998871 1 1223445788899999999999999996654 45564 4676667766553
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=61.51 E-value=1.1e+02 Score=26.59 Aligned_cols=112 Identities=5% Similarity=-0.009 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCccc--HHHHHHHhhhcC---ch--hhHHHhhhh----hHhHHH-HHH
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYT--FPFLFKGFTRDI---AG--SLEKSCIVM----RVFVQN-ALI 121 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~~~t--~~~ll~~~~~~~---~~--a~~~~~~~~----~~~~~~-~li 121 (230)
+.+.+...+..|+|+.|+++.+.-+.. -+.+|..- =..|+.+-+..- +. ++..-.+.. |.+.-. ..-
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 678888889999999999998876543 35565432 222333222110 11 222111111 222211 123
Q ss_pred HHHHhcCCHHHHHHHHhhccC--CChhhhHHHHHHhhhcchhhhHHH
Q 042210 122 STYCLCGEVDMARGIFYMSCE--DDDGLHELIRIKAVDDDLHELFPE 166 (230)
Q Consensus 122 ~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~~~~~~~~~~~~ 166 (230)
..|.+-|++.++-++++.+-+ |-.-.|...+.+...+.+++..++
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKR 317 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHH
Confidence 577888999999999998865 544445555544444444444433
No 241
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.10 E-value=1.2e+02 Score=27.32 Aligned_cols=86 Identities=20% Similarity=0.126 Sum_probs=62.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhh----hcchhhhHHHHHHHhhhcCc--hhhhhhh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAV----DDDLHELFPEYLVQMLALPD--TFMGEGL 183 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p~--~~t~~~l 183 (230)
|..+++.|=-.|--.|++++|.+-|+..-. | |-..||-|-...+ .++|++-+.+-++ ..|+ .+=|+.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNl- 504 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNL- 504 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhh-
Confidence 788899998889999999999999997764 5 5678998755443 4577777776544 4465 223333
Q ss_pred hhcccccCCcccccccCCccCCcccccc
Q 042210 184 EVIPKSQAPREETPRVGNLEEGTPQEGR 211 (230)
Q Consensus 184 ~~~~~~~~~~~a~~~~g~~~~a~~i~~~ 211 (230)
.+ +|...|.+++|.+.+-.
T Consensus 505 -gI--------S~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 505 -GI--------SCMNLGAYKEAVKHLLE 523 (579)
T ss_pred -hh--------hhhhhhhHHHHHHHHHH
Confidence 33 78899999888665543
No 242
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.61 E-value=52 Score=22.57 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhh--hcchhhhHHHHHHHh
Q 042210 120 LISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAV--DDDLHELFPEYLVQM 171 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~--~~~~~~~~~~m~~~~ 171 (230)
=++.+...|++++|..+.+.+.-||+..|-++-.+.. .++...-+.+|-..|
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 3567788999999999999999999999999865433 344444455555555
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=60.18 E-value=21 Score=17.98 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+|..+=..|...|++++|.+.|++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667778999999999999998654
No 244
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.57 E-value=1.4e+02 Score=27.80 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC------CCChhhHHHHHHHHHhcCChhH--HHHHHHH-HHhCCCCCCcccHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT------QPSVFLWNTMIKGYSRIDSHKN--GVLMYLD-LLKSDVRRDNYTFPFL 93 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~------~~~~~~yn~li~~~~~~~~~~~--a~~~~~~-M~~~g~~p~~~t~~~l 93 (230)
.+++.+|. .+|++..+..+++..- +.-...||.-|....++|.++- ..+-..+ +++.-+--|..||..|
T Consensus 32 ~sl~eacv--~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all 109 (1117)
T COG5108 32 ASLFEACV--YNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHH--hcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 45667777 6677766666666543 2223446666666666665442 2222222 2223344556666555
Q ss_pred HHHh
Q 042210 94 FKGF 97 (230)
Q Consensus 94 l~~~ 97 (230)
+.+.
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=59.47 E-value=69 Score=23.97 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=26.8
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
..|++++|..+|.-+- .-|..-|..|=.+|-..+++++|...|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776654 22333444555555556677777776655
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=58.96 E-value=20 Score=18.15 Aligned_cols=28 Identities=18% Similarity=0.123 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+|..+-..|...|++++|..-|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677788889999999999998887643
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.46 E-value=1.1e+02 Score=25.31 Aligned_cols=110 Identities=9% Similarity=-0.027 Sum_probs=60.1
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEK 107 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~ 107 (230)
..|+..+|...|+... ..+...--.+..+|...|+.+.|..++..+...--.........-|....+.... ...+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 6667777777776654 2222334456667777788888887777765543322222222334444444433 2333
Q ss_pred Hhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 108 SCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 108 ~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
....- |...--.|-..|.-.|+.+.|.+.+=.+..
T Consensus 226 ~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 226 QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33332 555555566677777777777665544433
No 248
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.34 E-value=42 Score=25.98 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=49.6
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC-CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCcccHHHHHHHh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT-QP--SVFLWNTMIKGYSRIDSHKNGVLMYLDLLK---SDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~-~~--~~~~yn~li~~~~~~~~~~~a~~~~~~M~~---~g~~p~~~t~~~ll~~~ 97 (230)
.+---+. +.|+ +.|...|-.+. .| +....-.-+..|--..|.+++..++.+..+ .+-.+|...+.+|.+.+
T Consensus 112 llYy~Ws--r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 112 LLYYHWS--RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HHHHHhh--ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 3444455 6666 45666665554 33 223333445555557788999998877544 34467788889999998
Q ss_pred hhcCch
Q 042210 98 TRDIAG 103 (230)
Q Consensus 98 ~~~~~~ 103 (230)
-+.++.
T Consensus 189 ~~~~~~ 194 (203)
T PF11207_consen 189 QKLKNY 194 (203)
T ss_pred HHhcch
Confidence 888876
No 249
>PRK04841 transcriptional regulator MalT; Provisional
Probab=56.34 E-value=1.3e+02 Score=28.73 Aligned_cols=109 Identities=6% Similarity=-0.129 Sum_probs=70.9
Q ss_pred ccCChHHHHHHHHhcC----CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC---CCcccHHHHHHHhhh
Q 042210 33 EKGDLKYECKVFRKIT----QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKSD--VR---RDNYTFPFLFKGFTR 99 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~----~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~g--~~---p~~~t~~~ll~~~~~ 99 (230)
..|++++|...++... ..+. ..++.+-..+...|++++|...+++..... .. +...++..+-..+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 7899999999888743 2221 234555556677899999999998875421 11 112234445556777
Q ss_pred cCch--hhHHHhhhh-------------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 100 DIAG--SLEKSCIVM-------------RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.|++ |...+.... ....+..+-..+...|++++|...+++..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 8888 766666554 11233444456677899999998888653
No 250
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.25 E-value=35 Score=23.42 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=26.9
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
...-|..|+..|-..|..++|.+++.+..+
T Consensus 38 ~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 38 EHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 566799999999999999999999998875
No 251
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=56.14 E-value=1e+02 Score=25.30 Aligned_cols=98 Identities=9% Similarity=-0.031 Sum_probs=54.7
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-------hh
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-------SL 105 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-------a~ 105 (230)
+..++....+.+..+ ..+..-...|......|++.+|+++..+..+.- . +..-|+++=..-.+..++ ..
T Consensus 110 kr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~~~L~e~~~~i~~~ld 185 (291)
T PF10475_consen 110 KRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLSSQLQETLELIEEQLD 185 (291)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHhHHHHHHHHHHHHHHH
Confidence 444444444444444 233344556777888999999999998876531 0 111122221111111111 11
Q ss_pred HHHhhhh---hHhHHHHHHHHHHhcCCHHHHH
Q 042210 106 EKSCIVM---RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 106 ~~~~~~~---~~~~~~~li~~y~~~g~~~~A~ 134 (230)
..+..+. |+..|..++.+|.-.|+...+.
T Consensus 186 ~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 186 SDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 1122221 9999999999999999776654
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=55.95 E-value=1.9e+02 Score=28.76 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcc
Q 042210 121 ISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~ 141 (230)
+..||+...+++|.++-..-.
T Consensus 1033 v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1033 VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhHhHHHHHHHHHHhcc
Confidence 444555555555555544433
No 253
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.59 E-value=1.4e+02 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCC
Q 042210 16 LLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQ 49 (230)
Q Consensus 16 ~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~ 49 (230)
+.-+++. .++-..+. ..|+-++|...|++.+.
T Consensus 228 lr~NvhLl~~lak~~~--~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLY--YNGDYFQAEDIFSSTLC 260 (564)
T ss_pred CCccHHHHHHHhhhhh--hhcCchHHHHHHHHHhh
Confidence 4556667 88889999 99999999999998773
No 254
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=54.66 E-value=14 Score=22.70 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCc
Q 042210 65 IDSHKNGVLMYLDLLKSD-VRRDN 87 (230)
Q Consensus 65 ~~~~~~a~~~~~~M~~~g-~~p~~ 87 (230)
..|++.|...|.+++..| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 678999999999998865 66665
No 255
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.55 E-value=1.2e+02 Score=24.89 Aligned_cols=125 Identities=10% Similarity=-0.052 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHH---
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALIS--- 122 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~--- 122 (230)
+-++++..+.-.|.+.-....+.+.++..=+.+..-.+.|.+.--+.|++ +...|+... +..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566666666788888888999988865555555566666677777888 666666554 5555555553
Q ss_pred --HHHhcCCHHHHHHHHhhccCC---ChhhhH--HHHHHhhh--cchhhhHHHHHHHhhhcCchhhhh
Q 042210 123 --TYCLCGEVDMARGIFYMSCED---DDGLHE--LIRIKAVD--DDLHELFPEYLVQMLALPDTFMGE 181 (230)
Q Consensus 123 --~y~~~g~~~~A~~vf~~m~~~---~~~t~n--~li~~~~~--~~~~~~~~~m~~~~~~~p~~~t~~ 181 (230)
.|.-..++-+|.+.|+++... |.+.-| +++--|.. .+|++..+.|...- |...+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~---P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD---PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---Cccchhh
Confidence 455667788888889888763 334333 35555543 46777777666554 4444444
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=53.58 E-value=1.2e+02 Score=24.56 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=88.2
Q ss_pred ccCChHHHHHHHHhcC------CCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCc-----
Q 042210 33 EKGDLKYECKVFRKIT------QPSV------FLWNTMIKGYSRIDSHKNGVLMYLDLLKS--------DVRRDN----- 87 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~------~~~~------~~yn~li~~~~~~~~~~~a~~~~~~M~~~--------g~~p~~----- 87 (230)
+.|+.+.|..++.+.+ .|+. ..||.-.+.+.+..+++.|...+++-.+- ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 7889999999998866 3332 35888887777765777776666553211 222333
Q ss_pred ccHHHHHHHhhhcCch-----hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-CC--hhhhHHHHHH
Q 042210 88 YTFPFLFKGFTRDIAG-----SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE-DD--DGLHELIRIK 154 (230)
Q Consensus 88 ~t~~~ll~~~~~~~~~-----a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-~~--~~t~n~li~~ 154 (230)
.++..+.+++...+.. +..+.+.+. .+.++-.-|...-+.++.+.+.+++.+|.. .+ ...+..++..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 3556667788777766 566666665 466776777777779999999999999876 22 2345554443
Q ss_pred hh------hcchhhhHHHHHHHh
Q 042210 155 AV------DDDLHELFPEYLVQM 171 (230)
Q Consensus 155 ~~------~~~~~~~~~~m~~~~ 171 (230)
.. ...+...+..++..-
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHH
Confidence 31 234555555555443
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=53.53 E-value=70 Score=23.93 Aligned_cols=78 Identities=10% Similarity=-0.065 Sum_probs=51.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc-Cch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHH
Q 042210 63 SRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD-IAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 63 ~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~-~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~ 134 (230)
-+.|++++|..+|+-+...+. ...-|..-+-+|.+. ++. |...+.... |+...=-+=..|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 346999999999999776442 223344445555444 344 666665554 5555555567788889999999
Q ss_pred HHHhhccC
Q 042210 135 GIFYMSCE 142 (230)
Q Consensus 135 ~vf~~m~~ 142 (230)
.-|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 98886654
No 258
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.73 E-value=11 Score=19.80 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=15.7
Q ss_pred CHHHHHHHHhhccC--CChhhhH
Q 042210 129 EVDMARGIFYMSCE--DDDGLHE 149 (230)
Q Consensus 129 ~~~~A~~vf~~m~~--~~~~t~n 149 (230)
++|.|+.||+.... |++.+|-
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 57888888887654 7777764
No 259
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=52.38 E-value=30 Score=17.27 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.|..+=..|.+.|++++|++.|++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566678889999999999998754
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.35 E-value=88 Score=22.79 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=16.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
-++.....|+-+.-.+++.++.+ +-.|+....-.+-.+|.+.|+.
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~ 136 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNT 136 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcch
Confidence 44444444444444444444432 1122223333444455555544
No 261
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.08 E-value=70 Score=24.21 Aligned_cols=32 Identities=3% Similarity=0.060 Sum_probs=20.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666666666666543
No 262
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.04 E-value=62 Score=21.43 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhHHH
Q 042210 126 LCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPE 166 (230)
Q Consensus 126 ~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~~~ 166 (230)
..|+.+.|+.+++.+. +..-.|..++.+...-+-..++++
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 5688999999999998 777778888888776655555443
No 263
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.42 E-value=21 Score=21.79 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=22.1
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|-.---.+|.+|...|++++|.+..+++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444457999999999999999888764
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=51.23 E-value=1.6e+02 Score=25.30 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=47.7
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcCCC-C--hh-hHH---HHHHHHHh---cCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKITQP-S--VF-LWN---TMIKGYSR---IDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~~~-~--~~-~yn---~li~~~~~---~~~~~~a~~~~~~M~~~g~~p~~~t~~~l 93 (230)
.++-.|- ...+++...++.+.++.+ + +. +-+ -..-++.+ .|+.++|++++.......-.++..||..+
T Consensus 146 ~lllSyR--diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYR--DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHhh--hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3334566 778899999999998833 1 11 000 11123444 79999999999997666666777777766
Q ss_pred HHHhh
Q 042210 94 FKGFT 98 (230)
Q Consensus 94 l~~~~ 98 (230)
=..|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 55543
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=50.45 E-value=1.1e+02 Score=27.11 Aligned_cols=108 Identities=10% Similarity=0.021 Sum_probs=53.6
Q ss_pred CChHHHHHHHHhcC--CCChhhHHHHHHHHHh-cCChhHHHHHHHHHHh--CCCC-CCcccHHHHHHHhhhcCch--hhH
Q 042210 35 GDLKYECKVFRKIT--QPSVFLWNTMIKGYSR-IDSHKNGVLMYLDLLK--SDVR-RDNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 35 ~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~-~~~~~~a~~~~~~M~~--~g~~-p~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
.+.+.|.++++.+. -|+...|...-.-+.+ .|++++|.+.|++... ...+ .....+--+.-.+.-..++ |..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 45666777777666 3666555444433322 5677777777765332 1111 1111222223334445555 556
Q ss_pred HHhhhh-----hHhHHHHHH-HHHHhcCCH-------HHHHHHHhhccC
Q 042210 107 KSCIVM-----RVFVQNALI-STYCLCGEV-------DMARGIFYMSCE 142 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li-~~y~~~g~~-------~~A~~vf~~m~~ 142 (230)
.|..+. ...+|.-+. ..|...|+. ++|.++|.+.+.
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666555 222222222 223445666 777777776653
No 266
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=50.16 E-value=1.6e+02 Score=25.13 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=77.8
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CCChh--------------hH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-Cc
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QPSVF--------------LW--NTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DN 87 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~~~~--------------~y--n~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~ 87 (230)
..+. +.|.++.|..=|+... .|+.- .| -..+..+.-+|+...|.+....+.+- .| |.
T Consensus 114 ~vll--K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda 189 (504)
T KOG0624|consen 114 VVLL--KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDA 189 (504)
T ss_pred hhhh--hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--Ccchh
Confidence 3455 9999999999999875 33211 12 23444555678888899888887663 33 66
Q ss_pred ccHHHHHHHhhhcCchhhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChh
Q 042210 88 YTFPFLFKGFTRDIAGSLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDG 146 (230)
Q Consensus 88 ~t~~~ll~~~~~~~~~a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~ 146 (230)
.-|..--++|...|.+-..|++.-. +....=-+-..+-..|+.+.+.....+.-. ||-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 6677778888888887333333222 455555556677888999999888887765 6543
No 267
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.86 E-value=1.5e+02 Score=24.76 Aligned_cols=118 Identities=10% Similarity=-0.002 Sum_probs=73.6
Q ss_pred ccCChHHHHHHHHhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHH-HhCCCCCCcccHHHHHHHhhhcCch-hhHHHh
Q 042210 33 EKGDLKYECKVFRKITQ-PSVFLWNTMIKGYSRIDSHKNGVLMYLDL-LKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~-~~~~~yn~li~~~~~~~~~~~a~~~~~~M-~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~ 109 (230)
..+++..++.+.++.+. -+..+-+-.=.-..+.|+.+.|..-|++- +-.|..|- ..|+..+..|.+...- |....+
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHHhhhhHHHHHHHHH
Confidence 45556666666666552 22222222222234679999999999985 44678874 5888888877665444 666666
Q ss_pred hhh-------------------h--------HhHHHHHHH-------HHHhcCCHHHHHHHHhhccC-----CChhhhHH
Q 042210 110 IVM-------------------R--------VFVQNALIS-------TYCLCGEVDMARGIFYMSCE-----DDDGLHEL 150 (230)
Q Consensus 110 ~~~-------------------~--------~~~~~~li~-------~y~~~g~~~~A~~vf~~m~~-----~~~~t~n~ 150 (230)
++. | ...-+.++. .+-+.|+.+.|++-+-.|+. -|.+|-..
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 555 1 122233444 34688999999999999985 35666544
Q ss_pred H
Q 042210 151 I 151 (230)
Q Consensus 151 l 151 (230)
+
T Consensus 283 ~ 283 (459)
T KOG4340|consen 283 Q 283 (459)
T ss_pred H
Confidence 4
No 268
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.31 E-value=27 Score=28.81 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=36.8
Q ss_pred CChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 042210 50 PSVF-LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95 (230)
Q Consensus 50 ~~~~-~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~ 95 (230)
||.. -||..|..-.+.||+++|+.+++|-++.|+.=-..||-..++
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 4544 378999999999999999999999999998755556654443
No 269
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=48.28 E-value=67 Score=27.12 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=53.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-------CCChhhH--HHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCcc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-------QPSVFLW--NTMIKGYSRIDSHKNGVLMYLDLLK-----SDVRRDNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~~~~~y--n~li~~~~~~~~~~~a~~~~~~M~~-----~g~~p~~~ 88 (230)
..++...- +.++.++|.++++++. .||.+.| .....++...||+.++.+.+.+.+. .|++|+..
T Consensus 79 ei~l~~~~--~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 79 EILLVVSE--QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHH--HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33445555 6678899999988875 6787766 4455566678999999999998877 68888554
Q ss_pred -cHHHHHH-HhhhcCch
Q 042210 89 -TFPFLFK-GFTRDIAG 103 (230)
Q Consensus 89 -t~~~ll~-~~~~~~~~ 103 (230)
.|..+=. -|-+.|++
T Consensus 157 ~~fY~lssqYyk~~~d~ 173 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDF 173 (380)
T ss_pred hhHHHHHHHHHHHHHhH
Confidence 3444422 33333444
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=48.04 E-value=1.1e+02 Score=22.70 Aligned_cols=35 Identities=11% Similarity=-0.075 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHhhccC--CChhhhHHHHHHhhh
Q 042210 123 TYCLCGEVDMARGIFYMSCE--DDDGLHELIRIKAVD 157 (230)
Q Consensus 123 ~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~~~ 157 (230)
.+.+.|++++|.++|+++.+ |......+|+..|..
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45678999999999999876 444555666665543
No 271
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.55 E-value=46 Score=22.72 Aligned_cols=46 Identities=13% Similarity=-0.033 Sum_probs=33.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
++..+...+..-.|.++++++++.+..++..|---.|+.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566778888888888887777777777777777777765
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=47.51 E-value=1e+02 Score=27.47 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=30.2
Q ss_pred ccCChHHHHHHHHhcC--CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT--QPS---VFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~---~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
+.|+.++|.+.|.+|. .|. ....-.||.++...+.+.++..++.+-.
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 6677777777777764 222 2244556777777777777777776653
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=47.35 E-value=1.4e+02 Score=26.24 Aligned_cols=98 Identities=9% Similarity=-0.026 Sum_probs=68.8
Q ss_pred ccCChHHHHHHHH--hc-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHH
Q 042210 33 EKGDLKYECKVFR--KI-TQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEK 107 (230)
Q Consensus 33 ~~~~~~~a~~~~~--~m-~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~ 107 (230)
-.++++.+.+... ++ +.-+....+.++.-+-+.|.++.|+.+-++- ..-+....+.|++ |.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHH
Confidence 5577777555443 11 1112345888888888999999999995442 2356667778999 8888
Q ss_pred HhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 108 SCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 108 ~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.....+...|..|=+...+.|+++-|++.|.+..+
T Consensus 341 a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 341 AKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 88888899999999999999999999999998764
No 274
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.26 E-value=70 Score=22.57 Aligned_cols=53 Identities=6% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcc-CChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 23 PKQTRYLLLYEK-GDLKYECKVFRKIT-----QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 23 ~~ll~~~~~~~~-~~~~~a~~~~~~m~-----~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
...+..+. +- ...+++.++|+.|. ..-...|...-..+-..|++.+|.++|+.
T Consensus 66 ~RylkiWi--~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWI--KYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHH--HHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44565555 32 23458888888887 33345677777778888999999998864
No 275
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.57 E-value=1.5e+02 Score=26.17 Aligned_cols=64 Identities=9% Similarity=-0.056 Sum_probs=39.6
Q ss_pred HHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhh
Q 042210 93 LFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAV 156 (230)
Q Consensus 93 ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~ 156 (230)
|+.-|.-.|++ |.+..+++. ..+++-+++-+.-+.|+-+.-.+++.+.-.-..+|-|.|-+++.
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~ 585 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhh
Confidence 44445555555 444444444 66667777777777777666666666666666777777766664
No 276
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.49 E-value=84 Score=20.49 Aligned_cols=62 Identities=5% Similarity=0.051 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHH
Q 042210 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a 71 (230)
..+++.+.+.|+-.. .-.=..-+ ...+.+.+.++++.++.+....|.++.+++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~---~~~e~I~~--~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP---DMIEEIQA--AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH---HHHHHHHc--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345666666653322 22222223 455688888888888888888888888888777765444
No 277
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=45.40 E-value=12 Score=21.86 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=16.4
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCc
Q 042210 65 IDSHKNGVLMYLDLLKSD-VRRDN 87 (230)
Q Consensus 65 ~~~~~~a~~~~~~M~~~g-~~p~~ 87 (230)
..|++.|...|.+++..| |+|+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 568888999999887776 66665
No 278
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.66 E-value=30 Score=16.88 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=15.9
Q ss_pred CCHHHHHHHHhhccC--C-ChhhhHHHH
Q 042210 128 GEVDMARGIFYMSCE--D-DDGLHELIR 152 (230)
Q Consensus 128 g~~~~A~~vf~~m~~--~-~~~t~n~li 152 (230)
|+.+.|+.+|+.+.. | +...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 567888888888765 3 334455443
No 279
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.46 E-value=21 Score=22.81 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=7.6
Q ss_pred HhcCCHHHHHHHHh
Q 042210 125 CLCGEVDMARGIFY 138 (230)
Q Consensus 125 ~~~g~~~~A~~vf~ 138 (230)
++.|+++-.+.+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44555555555555
No 280
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=44.11 E-value=35 Score=15.68 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.|..+-..|...|+.++|...|+...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46667778888899999988887654
No 281
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.84 E-value=1.5e+02 Score=26.52 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=63.3
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY-TFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~-t~~~ll~~~~~~~~~--a~~ 106 (230)
..|+++.|...|-+.. ++|.+.|+-=..+|++.|++.+|+.==.+ ...+.|+.. -|+-.=.++...|++ |..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k--~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATK--TRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHH--HHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 7899999999997743 77899999999999999999988764433 344667532 344444444445555 555
Q ss_pred HHhhhh-----hHhHHHHHHHHH
Q 042210 107 KSCIVM-----RVFVQNALISTY 124 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y 124 (230)
-|..-. +...++.|.+++
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhh
Confidence 444443 778888888887
No 282
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=43.80 E-value=35 Score=21.45 Aligned_cols=40 Identities=5% Similarity=-0.040 Sum_probs=31.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 64 RIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 64 ~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
-.++.+.+.+++++....|+.|.......+..+..+.|..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999889999887777777777776654
No 283
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.67 E-value=76 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=16.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
.|+...-..-+.+|-+.+|+..|.++|+-.+
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444555555555555555555555543
No 284
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.08 E-value=96 Score=22.29 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 71 GVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 71 a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
..+.++.....++.|+....-..+++|-+.+++ |-++++.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334456666778999999999999999999998 888888777
No 285
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.97 E-value=97 Score=23.79 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=20.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
+..|.+.|.+++|.+++++... .|+......-+..-.+..+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 3345555566666655555443 23333334444444444443
No 286
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.94 E-value=2.1e+02 Score=24.35 Aligned_cols=164 Identities=9% Similarity=-0.127 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKITQPSVF--LWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~--~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
++.+.+.+.|..|+... .+.++..+ +.|+.+-+..+++.-..|+.. ...+.+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~---- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAM--KFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD---- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----
Confidence 45677788888776533 56777777 889988777777654333321 11234555666788776555543
Q ss_pred CCCCC----CcccHHHHHHHhhhcCch--hhHHHhhhhhH----hHHHHHHHHHHhcCCHHHHHHHHhhccCC---Chhh
Q 042210 81 SDVRR----DNYTFPFLFKGFTRDIAG--SLEKSCIVMRV----FVQNALISTYCLCGEVDMARGIFYMSCED---DDGL 147 (230)
Q Consensus 81 ~g~~p----~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~vf~~m~~~---~~~t 147 (230)
.|... +..-.+.| ...+..|+. ++.+++.-.|+ ....+.++..++.|+.+-++.+++.-..+ |..-
T Consensus 90 ~~~~~~~~~~~~g~tpL-~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 168 (413)
T PHA02875 90 LGKFADDVFYKDGMTPL-HLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168 (413)
T ss_pred cCCcccccccCCCCCHH-HHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Confidence 33221 11122333 334455666 44444332211 11234566667889999888888765443 3334
Q ss_pred hHHHHHHhhhcchhhhHHHHHHHhhhcCchh
Q 042210 148 HELIRIKAVDDDLHELFPEYLVQMLALPDTF 178 (230)
Q Consensus 148 ~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~ 178 (230)
++.+.-+. ..+..+..+-+.+.| ..|+..
T Consensus 169 ~TpL~~A~-~~g~~eiv~~Ll~~g-a~~n~~ 197 (413)
T PHA02875 169 CTPLIIAM-AKGDIAICKMLLDSG-ANIDYF 197 (413)
T ss_pred CCHHHHHH-HcCCHHHHHHHHhCC-CCCCcC
Confidence 45554333 335567778788887 556543
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.43 E-value=2.3e+02 Score=24.25 Aligned_cols=109 Identities=6% Similarity=0.025 Sum_probs=67.1
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHh--hhcCch--h
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRDNYTFPFLFKGF--TRDIAG--S 104 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~~~t~~~ll~~~--~~~~~~--a 104 (230)
..|...+|...|+++. +.|...++..=++|...|+...-...++...-. +-..-..+|..=+.++ ..+|-. |
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3455566666666664 567788888888888899988888888876443 2211123333333333 344544 5
Q ss_pred hHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 105 LEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 105 ~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+..-+... |-..-.+.-+.+--.|+..++.+...+-.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 54444443 55566666777777777777777766544
No 288
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=41.23 E-value=3e+02 Score=25.56 Aligned_cols=102 Identities=9% Similarity=-0.073 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHhh------hcCch--hhHHHhhhh----hH-hH
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFT------RDIAG--SLEKSCIVM----RV-FV 116 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~~t~~~ll~~~~------~~~~~--a~~~~~~~~----~~-~~ 116 (230)
....|-.+..++.-.|+...|..+.++.++.. -.|+...|.-.....- +.|.. +.+...... |. ..
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~ 221 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF 221 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence 44568888888888999999999999988765 4577777765544333 33333 333332222 22 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR 152 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li 152 (230)
--.--+.+.+.+++++|..++..... ||.+-|+-.+
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 23345678899999999999998876 7777777654
No 289
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.15 E-value=1.5e+02 Score=22.10 Aligned_cols=46 Identities=7% Similarity=-0.177 Sum_probs=29.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
++..+....+.-.|.++++.+.+.+..++..|----|+.+.+.|-+
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4444444455667777777777777666666666666666666654
No 290
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.51 E-value=48 Score=22.88 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=32.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
.++........+-.|.++++.|.+.|...+..|.---|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45666666666778888888888887777777666667777777654
No 291
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=40.48 E-value=2.5e+02 Score=26.31 Aligned_cols=108 Identities=8% Similarity=-0.012 Sum_probs=65.9
Q ss_pred HHHHHHhhhccCChHHHHHHHH-------------hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH
Q 042210 24 KQTRYLLLYEKGDLKYECKVFR-------------KITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~-------------~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~ 90 (230)
+--+++. ..|+.++|.++.- ++...+..+.-.+-..+.+...+.-|-++|..|-. .
T Consensus 708 aAAEmLi--SaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ 776 (1081)
T KOG1538|consen 708 AAAEMLI--SAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------L 776 (1081)
T ss_pred HHHHHhh--cccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------H
Confidence 3344455 6666666665542 22233333444444444555667778888887743 2
Q ss_pred HHHHHHhhhcCch--hhHHHhhhh---------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 91 PFLFKGFTRDIAG--SLEKSCIVM---------------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 91 ~~ll~~~~~~~~~--a~~~~~~~~---------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+++......++| |.++-+..+ ...-+--.-.+|-|.|+-.+|.++++++..
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 4566777777777 666665555 112223345688899999999999998875
No 292
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.09 E-value=1.1e+02 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.1
Q ss_pred hcCCHHHHHHHHhhccC
Q 042210 126 LCGEVDMARGIFYMSCE 142 (230)
Q Consensus 126 ~~g~~~~A~~vf~~m~~ 142 (230)
+.|+++.|.+.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 67889999998888874
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.08 E-value=1.5e+02 Score=24.70 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=28.8
Q ss_pred HHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 26 TRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
-+.|. .+|.+.+|.++.+... +-+-..|-.+|..+...||--.+..-++.|
T Consensus 286 a~~yl--e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYL--EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHH--HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455 6666666666665544 233445556666666666655555555555
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=38.17 E-value=3e+02 Score=24.73 Aligned_cols=54 Identities=4% Similarity=-0.113 Sum_probs=35.5
Q ss_pred hhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CCh--hhhHHH
Q 042210 98 TRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDD--GLHELI 151 (230)
Q Consensus 98 ~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~--~t~n~l 151 (230)
-+.|+. |-+.+.++. ...+.-.||+.+-..+...+++.++.+-.+ |.+ ++||+.
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 344555 555555553 344566788899999999999999887654 444 456654
No 295
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=38.08 E-value=2e+02 Score=28.18 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=23.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 50 ~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
.|...|-.+..+|.++|+...|..+|.+-
T Consensus 594 kD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 594 KDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred hhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 35667888888888888888888888664
No 296
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=37.35 E-value=1.5e+02 Score=23.62 Aligned_cols=74 Identities=7% Similarity=-0.031 Sum_probs=44.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHh-cC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRK-IT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS--DVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~-m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~~~t~~~ll~~~ 97 (230)
+..++.+. +.+++.++.....+ .+ +.|...-..+++.+|-.|++++|..-++-.-+. ...+...+|..+|.+-
T Consensus 5 ~~t~seLL--~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 5 RDTISELL--DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHH--HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 34455666 77777777776654 22 345556667777888888888877666554332 2344555666666544
Q ss_pred h
Q 042210 98 T 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
No 297
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.93 E-value=80 Score=22.91 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcC
Q 042210 7 IHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKIT 48 (230)
Q Consensus 7 ~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~ 48 (230)
+.+.+++.|+++++.=-.++..+. ..++.-.|.++++.++
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~--~~~~~~sAeei~~~l~ 47 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLL--EADGHLSAEELYEELR 47 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHH--hcCCCCCHHHHHHHHH
Confidence 344455555555442244555555 4444455555555544
No 298
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.86 E-value=45 Score=27.52 Aligned_cols=33 Identities=18% Similarity=0.013 Sum_probs=28.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCCh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCEDDD 145 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~ 145 (230)
...-||..|..-.+.||+++|.++++|-++-++
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566689999999999999999999999876443
No 299
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=36.75 E-value=2.8e+02 Score=26.86 Aligned_cols=75 Identities=8% Similarity=-0.018 Sum_probs=46.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-----------------hhHHHhhhhh
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-----------------SLEKSCIVMR 113 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-----------------a~~~~~~~~~ 113 (230)
|....--+-..|-+.|++.+|..+|.+- .+|+..|+.|-..+-- |-+.|++.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrA---------qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-- 1034 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRA---------QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-- 1034 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--
Confidence 4444455677888889999999999773 4577777766554321 11222211
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHH
Q 042210 114 VFVQNALISTYCLCGEVDMARGI 136 (230)
Q Consensus 114 ~~~~~~li~~y~~~g~~~~A~~v 136 (230)
..-....+..|-|.|.+.+|.++
T Consensus 1035 g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1035 GGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred chhhhHHHHHHHhhcchHHHHHH
Confidence 12234456678888888888775
No 300
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=35.75 E-value=1.6e+02 Score=27.23 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=55.7
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CCh----hhhHHHHHH
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDD----GLHELIRIK 154 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~----~t~n~li~~ 154 (230)
|+-.+...+-+.|++ |....+... -+..|-.=-..+...|++++|...+++-.+ +|. .+-+-|+.+
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 344556677777777 777777666 233333333667888999999999998776 333 345557777
Q ss_pred hhhcchhhhHHHHHHHh
Q 042210 155 AVDDDLHELFPEYLVQM 171 (230)
Q Consensus 155 ~~~~~~~~~~~~m~~~~ 171 (230)
-..++|.+......++|
T Consensus 453 n~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREG 469 (700)
T ss_pred cccHHHHHHHHHhhhcc
Confidence 66777777777666666
No 301
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.45 E-value=1.3e+02 Score=19.64 Aligned_cols=38 Identities=8% Similarity=-0.090 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhhhc
Q 042210 121 ISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDD 158 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~ 158 (230)
-...+...+.++|+++++..+.++..+|.++..+....
T Consensus 37 e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~ 74 (84)
T cd08326 37 EEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRET 74 (84)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33444556677778888877777777777776665543
No 302
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.76 E-value=90 Score=22.64 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=22.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
++..+.+.++.-.|.++|+++++.+..-+..|----|+.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444444454445555666655555444444444344444444443
No 303
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.64 E-value=1.4e+02 Score=19.74 Aligned_cols=59 Identities=3% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCh
Q 042210 5 KQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSH 68 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~ 68 (230)
..+++.+.+.|+-.+ .-.-..-+ ..-+.+++.++++.++.+....|..+..++-..+..
T Consensus 23 ~~v~~~L~~~gvlt~---~~~~~I~~--~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 23 DELLIHLLQKDILTD---SMAESIMA--KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHcCCCCH---HHHHHHHc--CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 345555555553322 22222223 445678888888888888888888888888665543
No 304
>PHA02878 ankyrin repeat protein; Provisional
Probab=34.09 E-value=3.2e+02 Score=23.90 Aligned_cols=56 Identities=5% Similarity=-0.123 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhhcchhhhHHHHHHHhhhcCc
Q 042210 120 LISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVDDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~ 176 (230)
.+...++.|+.+-++.+++.=.. +|..-++.+.-+....+..++.+-+.+.| ..++
T Consensus 204 pLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn 262 (477)
T PHA02878 204 PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVN 262 (477)
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCC
Confidence 34455566777766666654333 23333444443333334556666666666 4443
No 305
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.66 E-value=1.2e+02 Score=19.35 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=23.4
Q ss_pred CChHHHHHHHHhcC---CCChhhHHHHHHHHHhc
Q 042210 35 GDLKYECKVFRKIT---QPSVFLWNTMIKGYSRI 65 (230)
Q Consensus 35 ~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~ 65 (230)
=+.+-|+.++..++ ++....||++-.-+.+.
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 35677888888887 56777899988777664
No 306
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=32.66 E-value=1.3e+02 Score=18.92 Aligned_cols=49 Identities=6% Similarity=-0.107 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 123 TYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 123 ~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
...+.-.+++|..+|+.+.......-..++..|..-++.++|--+-+..
T Consensus 13 ~~p~~~s~e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 13 EVPKRQSFEEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred hCCccCCHHHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 3345556899999999998866666688888888888888887665544
No 307
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.16 E-value=1.2e+02 Score=19.09 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 17 LTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 17 ~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
.++..+ ...+...+ +.++.+-...+.+.+..+|..+=...+.++++.|+ +++...+.++...
T Consensus 11 ~~~~~vr~~a~~~L~--~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 11 DPDPQVRAEAARALG--ELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD-PEAIPALIKLLQD 73 (88)
T ss_dssp SSSHHHHHHHHHHHH--CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence 577777 88888888 88877666667777778888777777888888775 4455555554443
No 308
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=32.04 E-value=2e+02 Score=20.98 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---C--CCCcccHHHHHHHhhhcCch---hhHHHhhhh------hHhHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSD---V--RRDNYTFPFLFKGFTRDIAG---SLEKSCIVM------RVFVQNA 119 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g---~--~p~~~t~~~ll~~~~~~~~~---a~~~~~~~~------~~~~~~~ 119 (230)
..|+++...+..+++...+.+++.+..-. + .-+..+|.+++++.++...- +..+|..+. ++.-|-.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 47899988888899999999988884321 1 24566788888887666542 667777666 5566666
Q ss_pred HHHHHHh
Q 042210 120 LISTYCL 126 (230)
Q Consensus 120 li~~y~~ 126 (230)
||.+..+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6666554
No 309
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=31.73 E-value=90 Score=21.67 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCCCCcccHHHHHHHhhhcCch-hhHHHhhhh--hHhHHHHHHHH
Q 042210 81 SDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM--RVFVQNALIST 123 (230)
Q Consensus 81 ~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~--~~~~~~~li~~ 123 (230)
.....+-.||+-+|+++-+.|-. -..++.++- |+..|+.+++.
T Consensus 67 AA~R~~GlsYS~fi~gLkkA~I~inRKvLadlAi~d~~aF~~lv~~ 112 (118)
T COG0292 67 AAARENGLSYSRFINGLKKAGIEIDRKVLADLAINDPAAFAALVEK 112 (118)
T ss_pred HHHHHcCCcHHHHHHHHHHcCchhhHHHHHHHHhcCHHHHHHHHHH
Confidence 34444556777777777766655 555555555 66666666653
No 310
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.51 E-value=1.9e+02 Score=21.75 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=26.8
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+..+|..++..+...|+.++|+++..++..
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999999999999888875
No 311
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.46 E-value=3.5e+02 Score=23.50 Aligned_cols=169 Identities=8% Similarity=-0.107 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCCCCc---H-HHHHHHHhhhccCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 5 KQIHSQTIKLGLLTKPH---C-PKQTRYLLLYEKGDLKYECKVFRKITQ---PSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~---~-~~ll~~~~~~~~~~~~~a~~~~~~m~~---~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
.++.+.+.+.|..++.. - +.+..+.. .+.|+.+-+..+++.-.. ++...++. +...++.|. .-.++.+.
T Consensus 86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~-~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~--~~~~iv~~ 161 (480)
T PHA03100 86 KEIVKLLLEYGANVNAPDNNGITPLLYAIS-KKSNSYSIVEYLLDNGANVNIKNSDGENL-LHLYLESNK--IDLKILKL 161 (480)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCchhhHHHh-cccChHHHHHHHHHcCCCCCccCCCCCcH-HHHHHHcCC--ChHHHHHH
Confidence 34566667777654322 1 22332221 145666666666654332 22223333 334444441 12344555
Q ss_pred HHhCCCCCCcccH--HHHHHHhhhcCch--hhHHHhhhh----------hHhHHHHHHHHHHhcCC--HHHHHHHHhhcc
Q 042210 78 LLKSDVRRDNYTF--PFLFKGFTRDIAG--SLEKSCIVM----------RVFVQNALISTYCLCGE--VDMARGIFYMSC 141 (230)
Q Consensus 78 M~~~g~~p~~~t~--~~ll~~~~~~~~~--a~~~~~~~~----------~~~~~~~li~~y~~~g~--~~~A~~vf~~m~ 141 (230)
+.+.|..++...- .+.+...+..|+. ++.+.+.-. ....+.+.+..-++.|. .+-+..+++.=.
T Consensus 162 Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~ 241 (480)
T PHA03100 162 LIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV 241 (480)
T ss_pred HHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC
Confidence 5666765543321 1234444455555 333333222 11222455566666777 777776666522
Q ss_pred C---CChhhhHHHHHHhhhcchhhhHHHHHHHhhhcCchhh
Q 042210 142 E---DDDGLHELIRIKAVDDDLHELFPEYLVQMLALPDTFM 179 (230)
Q Consensus 142 ~---~~~~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~t 179 (230)
. +|..-++.+..+. ..+..+.++.+.+.| ..|+...
T Consensus 242 din~~d~~g~TpL~~A~-~~~~~~iv~~Ll~~g-ad~n~~d 280 (480)
T PHA03100 242 PINIKDVYGFTPLHYAV-YNNNPEFVKYLLDLG-ANPNLVN 280 (480)
T ss_pred CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcC-CCCCccC
Confidence 2 3433445553332 233466777777777 4555443
No 312
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.05 E-value=2.5e+02 Score=21.73 Aligned_cols=27 Identities=4% Similarity=-0.025 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
-+.++..|...||++.|.+.|.-+.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 456666666677777777777666553
No 313
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.87 E-value=2.2e+02 Score=26.69 Aligned_cols=69 Identities=3% Similarity=-0.103 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCCcccHHHHHHHhhhcCch--------hhHHHhhhh---hHhHHHHHHHH
Q 042210 57 TMIKGYSRIDSHKNGVLMYLDLLKS--DVRRDNYTFPFLFKGFTRDIAG--------SLEKSCIVM---RVFVQNALIST 123 (230)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~~~t~~~ll~~~~~~~~~--------a~~~~~~~~---~~~~~~~li~~ 123 (230)
+|+.+|..+|++..+..+++..... |-+.-.-.||.-|+-..+.|++ +.+++.... |.-||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6899999999999999999887653 3333333577778888888887 333333333 77788877765
Q ss_pred HH
Q 042210 124 YC 125 (230)
Q Consensus 124 y~ 125 (230)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 54
No 314
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=30.26 E-value=29 Score=20.77 Aligned_cols=32 Identities=6% Similarity=0.293 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 68 ~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
-.+...+|+.|..+.-.|....|+..+.-|..
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 34555566666655555555555555554443
No 315
>PHA02265 hypothetical protein
Probab=30.15 E-value=52 Score=21.41 Aligned_cols=43 Identities=12% Similarity=-0.050 Sum_probs=29.5
Q ss_pred HHHHHHHHhhccC-----CChhhhHHHHHHhhhcchhhhHHHHHHHhh
Q 042210 130 VDMARGIFYMSCE-----DDDGLHELIRIKAVDDDLHELFPEYLVQML 172 (230)
Q Consensus 130 ~~~A~~vf~~m~~-----~~~~t~n~li~~~~~~~~~~~~~~m~~~~~ 172 (230)
.++-+.++++|+. |-.+.-++=-.+..-+++++-|+++.+.+.
T Consensus 3 ~~k~~~i~~~mk~el~~~p~~v~~tsk~~a~~i~~~l~kfk~ls~~~~ 50 (103)
T PHA02265 3 QDKLRAIYTEMKVELHKFPKEVDITSKSTAIAINQILDKFKTLTEQAG 50 (103)
T ss_pred hhHHHHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 3566788999975 655555554455556778888888877763
No 316
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=29.97 E-value=1.3e+02 Score=21.93 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=52.1
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCcccHHHHHHHhhhcCchhhHHH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAGSLEKS 108 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~~~~~~~a~~~~ 108 (230)
..|+++.|.+.|.+.. +.+...||.--.++--.|+.++|++=+++-.+ .|=+ | .+--.+|++.
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~----t-rtacqa~vQR-------- 121 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ----T-RTACQAFVQR-------- 121 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc----c-hHHHHHHHHH--------
Confidence 7778888888887654 45566777777777777888877777666433 2211 1 1112222222
Q ss_pred hhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 109 CIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 109 ~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-..|-..|+-|.|+.=|+.-.+
T Consensus 122 ------------g~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 122 ------------GLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred ------------HHHHHHhCchHHHHHhHHHHHH
Confidence 1246677888888888876543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.99 E-value=3.4e+02 Score=26.05 Aligned_cols=66 Identities=8% Similarity=0.092 Sum_probs=42.3
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCC-CCCCcccHHHHHHHhhhcCch
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY----LDLLKSD-VRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~----~~M~~~g-~~p~~~t~~~ll~~~~~~~~~ 103 (230)
+..+++.+..+.+...+-+...|-.+++.+++.+..+...+.. +...... ++| ..+++.+++.+.+
T Consensus 717 q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp-----l~VL~~Lakn~~l 787 (933)
T KOG2114|consen 717 QISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP-----LHVLQILAKNGTL 787 (933)
T ss_pred HhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH-----HHHHHHHhcCCce
Confidence 4444555555444444557778999999999988666555444 4443333 444 4588888888877
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.66 E-value=72 Score=26.79 Aligned_cols=31 Identities=10% Similarity=0.343 Sum_probs=17.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
-||.++++.+|+.+.+.++..+|.++..+|.
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4555666666666666666665555555443
No 319
>PRK05907 hypothetical protein; Provisional
Probab=28.64 E-value=3.2e+02 Score=22.72 Aligned_cols=77 Identities=10% Similarity=-0.022 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC-----------------CCChhhHH--HHHHHHHhc
Q 042210 6 QIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT-----------------QPSVFLWN--TMIKGYSRI 65 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----------------~~~~~~yn--~li~~~~~~ 65 (230)
-+-+.+.+.|..-+... ..++..++ .+++..+..-++++. -++...+| .|+++.+ .
T Consensus 142 Wi~~~~~~~g~~i~~~a~~~L~~~~~---~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~-~ 217 (311)
T PRK05907 142 LLIQRAKELGISCSLGLASLFVSKFP---QTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALL-R 217 (311)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHH-c
Confidence 34556677787777666 65655442 146666665555542 11222222 2555555 4
Q ss_pred CChhHHHHHHHHHHhC-CCCCC
Q 042210 66 DSHKNGVLMYLDLLKS-DVRRD 86 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~~-g~~p~ 86 (230)
|+..+|++++.+|... |..|-
T Consensus 218 ~~~~~Al~il~~Ll~~~ge~p~ 239 (311)
T PRK05907 218 RDRVEGHSLLRSLLSDMGEDPL 239 (311)
T ss_pred cCHHHHHHHHHHHHHhcCCChH
Confidence 7889999999999998 88885
No 320
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.54 E-value=1.3e+02 Score=21.36 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCh-----hhHHHHHHHHHhcCChhHHHHHHH
Q 042210 38 KYECKVFRKITQPSV-----FLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 38 ~~a~~~~~~m~~~~~-----~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
+++.++|..|....+ ..|-..-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778888874443 345555666667889999999886
No 321
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.46 E-value=2.3e+02 Score=25.23 Aligned_cols=44 Identities=5% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCcccHHHHHHHhhh
Q 042210 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDVR----RDNYTFPFLFKGFTR 99 (230)
Q Consensus 56 n~li~~~~~~~~~~~a~~~~~~M~~~g~~----p~~~t~~~ll~~~~~ 99 (230)
+..+.++...|.+.++-.++++|...=++ -+..+|+.++-.+++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 55566666667777776666666554333 555566665444444
No 322
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=27.76 E-value=3.1e+02 Score=23.20 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=49.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
+.+++...+.|.++.-...++++.+-..|...-++|+++... |+.+.-...+++|++.|+.++..-...|...+
T Consensus 278 ~~LmdfI~~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l 351 (354)
T TIGR01914 278 GVLMDFIAYLKARDFYSWPKFVDFLARRDPEISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEIL 351 (354)
T ss_pred hHHHHHHHHHhhhhhcchHHHHHHHhccChHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 445554443366566666777777765566666777766654 56677788888899999888876666655544
No 323
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.34 E-value=3.6e+02 Score=22.38 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=48.7
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~~~~~--a~~ 106 (230)
+.+++++|...|.+.- ..|.+.|.-=-.+|.+.|..+.|++=-+.-.. +-|. +.+|..|=.+|...|++ |.+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 6777777777777654 45666676667777777777776665443222 2232 23666666677777777 555
Q ss_pred HHhhhh
Q 042210 107 KSCIVM 112 (230)
Q Consensus 107 ~~~~~~ 112 (230)
.|+...
T Consensus 171 aykKaL 176 (304)
T KOG0553|consen 171 AYKKAL 176 (304)
T ss_pred HHHhhh
Confidence 555554
No 324
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.79 E-value=3e+02 Score=26.33 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCC---ChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 120 LISTYCLCGEVDMARGIFYMSCED---DDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~~---~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
.+..-+..|+.+-++.+++.=.++ |..-+|.+..+ +..+..+..+-+.+.|
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A-~~~g~~~iv~~Ll~~G 678 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA-MAEDHVDMVRLLIMNG 678 (823)
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCcHHHHHHHHHcC
Confidence 445556666666666666543332 22233444332 2334455555555555
No 325
>PLN03025 replication factor C subunit; Provisional
Probab=26.57 E-value=3.7e+02 Score=22.18 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----------------CCChhhHHHHHHHHHhcCChhHHHHH
Q 042210 12 IKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----------------QPSVFLWNTMIKGYSRIDSHKNGVLM 74 (230)
Q Consensus 12 ~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----------------~~~~~~yn~li~~~~~~~~~~~a~~~ 74 (230)
.+.|+..+... ..++.. ..|++..+...++... .+....-..+++... .++++.|...
T Consensus 172 ~~egi~i~~~~l~~i~~~----~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~~~~~~a~~~ 246 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIFT----ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-KGKFDDACDG 246 (319)
T ss_pred HHcCCCCCHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 44566655555 555443 3366666666655321 111122233343333 4678888888
Q ss_pred HHHHHhCCCCCCc
Q 042210 75 YLDLLKSDVRRDN 87 (230)
Q Consensus 75 ~~~M~~~g~~p~~ 87 (230)
+.+|...|..|..
T Consensus 247 l~~ll~~g~~~~~ 259 (319)
T PLN03025 247 LKQLYDLGYSPTD 259 (319)
T ss_pred HHHHHHcCCCHHH
Confidence 8888777877753
No 326
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.49 E-value=2e+02 Score=19.05 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=13.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
|...|-.++.-..-+--++....+++.|
T Consensus 42 dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 42 DPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 327
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=26.19 E-value=3.1e+02 Score=23.74 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCcH----HHHHHHHhhhccCChHHHHHHHHh
Q 042210 7 IHSQTIKLGLLTKPHC----PKQTRYLLLYEKGDLKYECKVFRK 46 (230)
Q Consensus 7 ~~~~m~~~g~~~~~~~----~~ll~~~~~~~~~~~~~a~~~~~~ 46 (230)
+.+.+.+.|+.|+..+ .+++.++. ..+..++..+++..
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~--a~~~~~e~~~~l~~ 142 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALV--GVHTDEELLRFLDG 142 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHH--HcCCHHHHHHHHhc
Confidence 4566788899998765 45777777 66777777777764
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=6.3e+02 Score=24.42 Aligned_cols=146 Identities=14% Similarity=0.020 Sum_probs=78.0
Q ss_pred CCCcH-HHHHHHHhh--hccCChHHHHHHHHh-cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 042210 18 TKPHC-PKQTRYLLL--YEKGDLKYECKVFRK-ITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFL 93 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~--~~~~~~~~a~~~~~~-m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~l 93 (230)
.|..+ ..+...|+- .+.|+.++|..-+-+ +..-+. ..+|.-|........--..++.+.+.|+.- ...-+.|
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlL 437 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLL 437 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHH
Confidence 44445 666666651 278899998776644 332221 225555555555555556666666666652 2233556
Q ss_pred HHHhhhcCch--hhHH----------------Hhhhh-----------------hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 94 FKGFTRDIAG--SLEK----------------SCIVM-----------------RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 94 l~~~~~~~~~--a~~~----------------~~~~~-----------------~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
+++|.+.++. -.+. ++.+. +... +--.+-..|++++|.+.+.
T Consensus 438 LncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~v---l~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWV---LDILLEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHH---HHHHHHHhcCHHHHHHHHh
Confidence 6777666554 1111 11111 2222 2233446788999999999
Q ss_pred hccC----CChhhhHHHHHHhhhcchhhhHHHHHHH
Q 042210 139 MSCE----DDDGLHELIRIKAVDDDLHELFPEYLVQ 170 (230)
Q Consensus 139 ~m~~----~~~~t~n~li~~~~~~~~~~~~~~m~~~ 170 (230)
.|+- |...+|.-.+--...++...++-+....
T Consensus 515 slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 515 SLPISELLRTLNKYGKILLEHDPEETMKILIELITE 550 (933)
T ss_pred cCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 9875 3444555444333334444444444433
No 329
>CHL00068 rpl20 ribosomal protein L20
Probab=24.86 E-value=1.4e+02 Score=20.91 Aligned_cols=43 Identities=2% Similarity=0.037 Sum_probs=30.9
Q ss_pred CCCCCcccHHHHHHHhhhcCch-hhHHHhhhh--hHhHHHHHHHHH
Q 042210 82 DVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM--RVFVQNALISTY 124 (230)
Q Consensus 82 g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~--~~~~~~~li~~y 124 (230)
.+...-.+|+.++.++.+.+-. -..++.++. |+.+|..|++..
T Consensus 68 a~R~~glsYs~fi~gL~~~~i~LnRKvLa~LAi~dp~~F~~lv~~~ 113 (115)
T CHL00068 68 AIRENGVSYSKFIHNLYKNQILLNRKILAQIAILDPNCFYTISNKI 113 (115)
T ss_pred HHHHcCCCHHHHHHHHHHcCCCccHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344455788888888887766 666677666 888888888754
No 330
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.71 E-value=3.3e+02 Score=21.00 Aligned_cols=19 Identities=5% Similarity=-0.274 Sum_probs=9.7
Q ss_pred HHHhhhcCch--hhHHHhhhh
Q 042210 94 FKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 94 l~~~~~~~~~--a~~~~~~~~ 112 (230)
+-.|.+.|.+ |.++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 3345555555 555555544
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.60 E-value=66 Score=18.93 Aligned_cols=26 Identities=23% Similarity=0.078 Sum_probs=19.1
Q ss_pred HHHHhcCCHHHHHHHHhhccC--CChhh
Q 042210 122 STYCLCGEVDMARGIFYMSCE--DDDGL 147 (230)
Q Consensus 122 ~~y~~~g~~~~A~~vf~~m~~--~~~~t 147 (230)
-++.|.|++++|++..+.+-+ |+-.-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 467899999999999998764 76543
No 332
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=24.56 E-value=4e+02 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
++++... |+...|..+++.+...|..|
T Consensus 206 l~dai~~-~~~~~A~~~l~~L~~~g~~p 232 (326)
T PRK07452 206 LADALLQ-GNTGKALALLDDLLDANEPA 232 (326)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHCCCcH
Confidence 4444443 56666666666666666554
No 333
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=24.49 E-value=2.1e+02 Score=18.62 Aligned_cols=51 Identities=4% Similarity=-0.115 Sum_probs=35.7
Q ss_pred CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 35 ~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
.+.+.+.+.-+....-|..+..+++.++...=..+.|..++..|--+|-+|
T Consensus 20 kN~~AVq~~~e~~~~~nqktL~vFl~ALa~~YGe~~a~~~~~~~~ls~~tP 70 (81)
T PF09119_consen 20 KNTNAVQKYVENQRVENQKTLQVFLEALAERYGEETANKVLDKMDLSGGTP 70 (81)
T ss_dssp T-HHHHHHHHHCS--S-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH-----
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCC
Confidence 456666677777778899999999999999988899999999987766566
No 334
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.39 E-value=1.4e+02 Score=23.26 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC------------------CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT------------------QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~------------------~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
+++-.|- +.-++.+.+++++.|. .+.-..-|.-..-+.++|.++.|..++++
T Consensus 137 S~m~~Yh--k~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYH--KTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3444444 8888888888888774 11223457777788899999999999874
No 335
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=24.30 E-value=3.8e+02 Score=21.63 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHhcC------CCChhhHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCcccHHHHHHHhhhcCch--
Q 042210 33 EKGDLKYECKVFRKIT------QPSVFLWNTMIKGYSRIDSHKNGVLMYLD-LLKSDVRRDNYTFPFLFKGFTRDIAG-- 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~------~~~~~~yn~li~~~~~~~~~~~a~~~~~~-M~~~g~~p~~~t~~~ll~~~~~~~~~-- 103 (230)
+.|++++|...|+.+. +-...+-=.++-++-+.++.+.|....++ |...+-.||. -|..-|.+.+.--.+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQIDD 124 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCCc
Q ss_pred -------hhHHHhhhh-------------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 104 -------SLEKSCIVM-------------------------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 104 -------a~~~~~~~~-------------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+.+-+..+. --..=-.+-..|.+.|.+..|..=|++|.+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
No 336
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=23.94 E-value=2.4e+02 Score=23.60 Aligned_cols=36 Identities=3% Similarity=-0.059 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccHH
Q 042210 56 NTMIKGYSRIDSHKNGVLMYLDLLKSDV-RRDNYTFP 91 (230)
Q Consensus 56 n~li~~~~~~~~~~~a~~~~~~M~~~g~-~p~~~t~~ 91 (230)
-.+++.|.+.|.+++|+++....++-.. -|+.....
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 4588899999999999999877655432 25543333
No 337
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=23.92 E-value=5.1e+02 Score=22.91 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=76.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-CCCh---------hhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-QPSV---------FLWNTMIKGYSR----IDSHKNGVLMYLDLLKSDVRRDNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-~~~~---------~~yn~li~~~~~----~~~~~~a~~~~~~M~~~g~~p~~~ 88 (230)
..+++..+ =.|+-+.+.+.+.+-. .+++ ..|+.++..++. ..+.+.|.++++++.+. -|+..
T Consensus 192 ~kll~~vG--F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 192 LKLLSFVG--FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHhhcC--cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 67788888 7888888888877654 3332 346666665554 45667788888887663 47765
Q ss_pred cHHHHH-HHhhhcCch--hhHHHhhhh---------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 89 TFPFLF-KGFTRDIAG--SLEKSCIVM---------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 89 t~~~ll-~~~~~~~~~--a~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-|...- +.+...|++ |.+.++... ....+-=+.-.+.-.+++++|.+.|..+.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 553332 234445677 777777544 222233344457778999999999999987
No 338
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=23.80 E-value=43 Score=21.83 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=2.4
Q ss_pred ccHHHHHHHhhhcC
Q 042210 88 YTFPFLFKGFTRDI 101 (230)
Q Consensus 88 ~t~~~ll~~~~~~~ 101 (230)
.+|...|++|++.|
T Consensus 25 ~vyRvFiNgYar~g 38 (88)
T PF11491_consen 25 AVYRVFINGYARNG 38 (88)
T ss_dssp TB------TTSS--
T ss_pred ceeeeeecccccce
Confidence 33444444444443
No 339
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=23.70 E-value=71 Score=18.08 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCCCcH
Q 042210 5 KQIHSQTIKLGLLTKPHC 22 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~ 22 (230)
.++.+++.+.|+.|.+++
T Consensus 9 ~eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 9 AELRAELKQYGLPPGPIT 26 (44)
T ss_pred HHHHHHHHHcCCCCCCcC
Confidence 468889999999988876
No 340
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.53 E-value=4e+02 Score=21.61 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc
Q 042210 43 VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD 100 (230)
Q Consensus 43 ~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~ 100 (230)
+|+-..+|....-..++..|.+ +++++|.+++.++-+.|..|.. ..+.+++.+-..
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~ 285 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKNM 285 (333)
T ss_pred hhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc
Confidence 3444447777777778876654 6899999999999999999854 345677766554
No 341
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.50 E-value=2.7e+02 Score=22.06 Aligned_cols=65 Identities=12% Similarity=0.015 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHH----hCCC-CCCcccHHHHHHHhhhcCch
Q 042210 39 YECKVFRKITQPSVFLW--NTMIKGYSRIDSHKNGVLMYLDLL----KSDV-RRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 39 ~a~~~~~~m~~~~~~~y--n~li~~~~~~~~~~~a~~~~~~M~----~~g~-~p~~~t~~~ll~~~~~~~~~ 103 (230)
.|.+-|..........+ --+-.-|.+.|++++|..+|+.+. +.|. .+...+...+..+..+.|+.
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 45555555443332222 234455666777777777777763 2343 34555566666666666665
No 342
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.98 E-value=6.7e+02 Score=23.91 Aligned_cols=85 Identities=8% Similarity=-0.081 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~ 131 (230)
+-+--+..+...|+..+|.++-.+.+ .||..-|-.=+.+++..++| -+++-+....+.=|--++..+.+.|+.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHH
Confidence 45666778888888888888855432 37888898889999999998 3344333346777888899999999999
Q ss_pred HHHHHHhhccC
Q 042210 132 MARGIFYMSCE 142 (230)
Q Consensus 132 ~A~~vf~~m~~ 142 (230)
+|.+.+.+...
T Consensus 762 EA~KYiprv~~ 772 (829)
T KOG2280|consen 762 EAKKYIPRVGG 772 (829)
T ss_pred HHhhhhhccCC
Confidence 99999998765
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=22.92 E-value=91 Score=20.23 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=27.4
Q ss_pred ccCChHHHHHHHHhcC-----CCC-hhhHHHHHHHHHhcCChhHHHHH
Q 042210 33 EKGDLKYECKVFRKIT-----QPS-VFLWNTMIKGYSRIDSHKNGVLM 74 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~-----~~~-~~~yn~li~~~~~~~~~~~a~~~ 74 (230)
..++-++|...|.... .++ ..+...++.+|+.-|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777776643 122 23567778888888887777665
No 344
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=22.35 E-value=3.2e+02 Score=22.80 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-h-------------hhHHH-HHHHHHhcCCh
Q 042210 7 IHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-V-------------FLWNT-MIKGYSRIDSH 68 (230)
Q Consensus 7 ~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~-------------~~yn~-li~~~~~~~~~ 68 (230)
+-+...+.|++.+... ..++..+. |+.-.+..-++++. .+| . .++|. =+.-....|+.
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~----~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~ 224 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG----GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDV 224 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC----CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCH
Confidence 4455567788888777 76666554 55555555555543 111 1 11111 12233446899
Q ss_pred hHHHHHHHHHHhCCCCC
Q 042210 69 KNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 69 ~~a~~~~~~M~~~g~~p 85 (230)
.+|..+++++...|..|
T Consensus 225 ~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 225 KKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHHHHHcCCcH
Confidence 99999999999999988
No 345
>PRK07914 hypothetical protein; Reviewed
Probab=22.33 E-value=4.5e+02 Score=21.69 Aligned_cols=75 Identities=4% Similarity=-0.094 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---------------CCChhhHHH--HHHHHHhcCCh
Q 042210 7 IHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---------------QPSVFLWNT--MIKGYSRIDSH 68 (230)
Q Consensus 7 ~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---------------~~~~~~yn~--li~~~~~~~~~ 68 (230)
+-+...+.|+..+... ..|+...+ +++.....-++++- -.+...+|. ++++.. .|+.
T Consensus 137 i~~~a~~~g~~i~~~A~~~L~~~~g----~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~-~g~~ 211 (320)
T PRK07914 137 VRKEFRSLRVKVDDDTVTALLDAVG----SDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAV-AGDV 211 (320)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHC----ccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHH-CCCH
Confidence 4455566677777766 66666554 24444444344332 011112222 333333 4788
Q ss_pred hHHHHHHHHHHhCCCCCC
Q 042210 69 KNGVLMYLDLLKSDVRRD 86 (230)
Q Consensus 69 ~~a~~~~~~M~~~g~~p~ 86 (230)
.+|..++.++...|..|-
T Consensus 212 ~~A~~~l~~L~~~ge~p~ 229 (320)
T PRK07914 212 AGAAEALRWAMMRGEPHV 229 (320)
T ss_pred HHHHHHHHHHHHCCCchH
Confidence 889999999888888773
No 346
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.29 E-value=82 Score=24.77 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHhCCCC--C-----CcccHHHHHHHhhhcCch-----------hhHHHhhhh-------hHhHHHHHH
Q 042210 67 SHKNGVLMYLDLLKSDVR--R-----DNYTFPFLFKGFTRDIAG-----------SLEKSCIVM-------RVFVQNALI 121 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~g~~--p-----~~~t~~~ll~~~~~~~~~-----------a~~~~~~~~-------~~~~~~~li 121 (230)
..+.|..++.+|--..++ | ...-|..+-++|++.|-+ -.++.+... -+.+|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 456777888777654333 1 223477788888888754 222222222 578899999
Q ss_pred HHHHhcCCHHHHHHHHhhcc
Q 042210 122 STYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 122 ~~y~~~g~~~~A~~vf~~m~ 141 (230)
+.-...-++++.+++|..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 88888888999999998775
No 347
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=1.5e+02 Score=24.45 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=61.8
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhh-------hcchhhhHHHHHHHhhhcCchhhhhh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAV-------DDDLHELFPEYLVQMLALPDTFMGEG 182 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~-------~~~~~~~~~~m~~~~~~~p~~~t~~~ 182 (230)
|...|-.|=..|...|+.+.|..-|.+-.+ +|...+..+-.... ..++.++|++..+. .|+..+-.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHHHH
Confidence 899999999999999999999999987765 44444444322211 12455555554443 355554444
Q ss_pred hhhcccccCCcccccccCCccCCccccccccccC
Q 042210 183 LEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 183 l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
+-.+ ++...|++.+|...++.|.+..
T Consensus 232 lLA~--------~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAF--------AAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHH--------HHHHcccHHHHHHHHHHHHhcC
Confidence 3222 6667899999988888877764
No 348
>PRK11906 transcriptional regulator; Provisional
Probab=22.00 E-value=5.6e+02 Score=22.72 Aligned_cols=43 Identities=7% Similarity=0.210 Sum_probs=21.2
Q ss_pred ccCChHHHHHHHHhcC--CCCh---hhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT--QPSV---FLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~---~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
-.++.+.|...|+... .||. ..|..++. .-+|+.++|.+.+++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~--~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVH--FHNEKIEEARICIDK 397 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 4445666666666544 3332 23333332 234566666666555
No 349
>TIGR01032 rplT_bact ribosomal protein L20. This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly
Probab=21.85 E-value=1.4e+02 Score=20.84 Aligned_cols=38 Identities=3% Similarity=0.064 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhhhcCch-hhHHHhhhh--hHhHHHHHHHH
Q 042210 86 DNYTFPFLFKGFTRDIAG-SLEKSCIVM--RVFVQNALIST 123 (230)
Q Consensus 86 ~~~t~~~ll~~~~~~~~~-a~~~~~~~~--~~~~~~~li~~ 123 (230)
.-.+|+.++.++.+.+-. -..++.++- |+.++..|++.
T Consensus 71 ~g~~Ys~fi~~L~~~~i~LnRKvLa~lAi~dp~~F~~lv~~ 111 (113)
T TIGR01032 71 HGLSYSRFINGLKKANIEINRKVLSELAINDPEAFAEIVEQ 111 (113)
T ss_pred cCCCHHHHHHHHHHcCCCccHHHHHHHHhcCHHHHHHHHHH
Confidence 344688888888877766 666666666 78888877753
No 350
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.73 E-value=5.9e+02 Score=22.85 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=43.8
Q ss_pred HHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----------------CCChhhHHHHHHHHHhcCChhHHHHH
Q 042210 12 IKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----------------QPSVFLWNTMIKGYSRIDSHKNGVLM 74 (230)
Q Consensus 12 ~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----------------~~~~~~yn~li~~~~~~~~~~~a~~~ 74 (230)
.+.|+..+... ..++.. ..|++..|...++.+. .+.......++++. ..++...|+..
T Consensus 189 ~~egi~i~~~Al~~ia~~----s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~ 263 (504)
T PRK14963 189 EAEGREAEPEALQLVARL----ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSG 263 (504)
T ss_pred HHcCCCCCHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHH
Confidence 45677665544 444432 3477777776666542 12222233455555 45899999999
Q ss_pred HHHHHhCCCCCC
Q 042210 75 YLDLLKSDVRRD 86 (230)
Q Consensus 75 ~~~M~~~g~~p~ 86 (230)
++++...|..|.
T Consensus 264 l~~Ll~~G~~~~ 275 (504)
T PRK14963 264 AAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHcCCCHH
Confidence 999999987764
No 351
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.60 E-value=2.1e+02 Score=20.65 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 67 SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
..-.|.++++.+.+.+...+..|----|+.+.+.|-+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555555555555444444444444444444443
No 352
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=21.28 E-value=4e+02 Score=20.78 Aligned_cols=86 Identities=12% Similarity=-0.016 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhc
Q 042210 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLC 127 (230)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~ 127 (230)
.|-.+....|+..+|...|++-...-+.-|....-.+-++....++. +...++.+. .+..--.+-..|...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 34555566666666666666654444444554555555555555555 444444443 333333444556666
Q ss_pred CCHHHHHHHHhhccC
Q 042210 128 GEVDMARGIFYMSCE 142 (230)
Q Consensus 128 g~~~~A~~vf~~m~~ 142 (230)
|....|+.-|+...+
T Consensus 174 g~~a~Aesafe~a~~ 188 (251)
T COG4700 174 GKYADAESAFEVAIS 188 (251)
T ss_pred CCchhHHHHHHHHHH
Confidence 666666666665544
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=21.27 E-value=3e+02 Score=19.19 Aligned_cols=68 Identities=10% Similarity=-0.057 Sum_probs=37.5
Q ss_pred hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhh--hcchhhhHHHHHHHh
Q 042210 104 SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAV--DDDLHELFPEYLVQM 171 (230)
Q Consensus 104 a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~--~~~~~~~~~~m~~~~ 171 (230)
|..|.+.+. ...+--.-+..+.+.|++++|...=.....||...|-++-.+.. .+++...+.++-..|
T Consensus 25 A~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 25 ANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 555555554 23333344567788899999944444444599999998865432 334444444444444
No 354
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.83 E-value=1.9e+02 Score=17.84 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=31.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
.|....++-++..+++..-.+.++..+.+..+.|.- +..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 355566777788888877778888888887777653 23344444444433
No 355
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=20.56 E-value=5.7e+02 Score=23.28 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=57.2
Q ss_pred HHHHhCCCCCCcccHHH-----HHHHhhhcCch---hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 76 LDLLKSDVRRDNYTFPF-----LFKGFTRDIAG---SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 76 ~~M~~~g~~p~~~t~~~-----ll~~~~~~~~~---a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.++...|++-+..+|.. |+++.-++..- |.++..++. |+-.||.++.-..+.+.++.-++++..+.
T Consensus 345 ~~Le~l~i~~t~~~F~~~~K~~Lik~Lwk~h~~~p~alrliA~Lcley~i~dpqlWn~iL~~l~~~~mi~~L~~lL~~is 424 (551)
T PF10493_consen 345 AELEELNIPYTIESFESCDKEGLIKSLWKNHSHNPQALRLIAELCLEYDIYDPQLWNGILQQLLGFNMISYLRKLLDAIS 424 (551)
T ss_pred HHHHhcCCCccHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 44455677777666654 67777666432 666666655 99999999999999999999999999887
Q ss_pred C-CCh-------hhhHHHHHH
Q 042210 142 E-DDD-------GLHELIRIK 154 (230)
Q Consensus 142 ~-~~~-------~t~n~li~~ 154 (230)
. |.. .+|-..|..
T Consensus 425 ~~~~l~~i~~~~~aW~~vi~~ 445 (551)
T PF10493_consen 425 SIPSLWQIPGFSMAWQRVIQA 445 (551)
T ss_pred CChhhhcCccHHHHHHHHHHH
Confidence 6 322 357776654
No 356
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=20.42 E-value=4.2e+02 Score=20.67 Aligned_cols=126 Identities=7% Similarity=-0.012 Sum_probs=80.4
Q ss_pred CCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCc
Q 042210 16 LLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS---DVRRDN 87 (230)
Q Consensus 16 ~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~---g~~p~~ 87 (230)
..|++.- -.|-.... +.|+..+|+..|.+-. .-|....-.+-++....+++-.|...++.+-+. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~--elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALA--ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHH--HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 4465555 56777778 9999999999998865 345555555555666678999999999886554 334553
Q ss_pred ccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHH----HHhhccCCChhhhH
Q 042210 88 YTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARG----IFYMSCEDDDGLHE 149 (230)
Q Consensus 88 ~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~----vf~~m~~~~~~t~n 149 (230)
.-.+-+.+...|.. |+.-|+... -..-|.- .+.+.|+.++|.. +++... ++-..|.
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e---~La~qgr~~ea~aq~~~v~d~~~-r~~~H~r 231 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE---MLAKQGRLREANAQYVAVVDTAK-RSRPHYR 231 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH---HHHHhcchhHHHHHHHHHHHHHH-hcchhHH
Confidence 33456677777877 777777776 3333443 4456666666554 444443 3444444
No 357
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=20.23 E-value=7.6e+02 Score=23.55 Aligned_cols=73 Identities=11% Similarity=-0.037 Sum_probs=35.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhhcCch--hhH--HHhhhh-----hHhHHHHHHHHHHhcCCHHHH
Q 042210 64 RIDSHKNGVLMYLDLLKSDVRRDNY-TFPFLFKGFTRDIAG--SLE--KSCIVM-----RVFVQNALISTYCLCGEVDMA 133 (230)
Q Consensus 64 ~~~~~~~a~~~~~~M~~~g~~p~~~-t~~~ll~~~~~~~~~--a~~--~~~~~~-----~~~~~~~li~~y~~~g~~~~A 133 (230)
..|.+.+|.+.|..-. -+.||.+ ..+++-.++.+.|+. +.. +..++. +...|-.|=..+-+.|+.+.|
T Consensus 696 ~~~~~~EA~~af~~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHhhHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 3455555555554322 2333222 344555555555554 222 444443 555555555666666666666
Q ss_pred HHHHh
Q 042210 134 RGIFY 138 (230)
Q Consensus 134 ~~vf~ 138 (230)
-+-|.
T Consensus 774 aecf~ 778 (799)
T KOG4162|consen 774 AECFQ 778 (799)
T ss_pred HHHHH
Confidence 55555
No 358
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=20.02 E-value=3.7e+02 Score=19.85 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH-HHh
Q 042210 5 KQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKITQPS-VFLWNTMIKGYSRIDSHKNGVLMYLD-LLK 80 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~~~~-~~~yn~li~~~~~~~~~~~a~~~~~~-M~~ 80 (230)
..+.+.|.- +.|...- ..---.+. +.|++++|..+|++..... ...|..-+.++|-...-+..++.+-. ...
T Consensus 30 e~lLdALrv--LrP~~~e~d~~dg~l~i--~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le 105 (153)
T TIGR02561 30 QAMLDALRV--LRPNLKELDMFDGWLLI--ARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHADEVLA 105 (153)
T ss_pred HHHHHHHHH--hCCCccccchhHHHHHH--HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 344444432 4566544 22223445 8999999999999998333 33566566666655444555555533 445
Q ss_pred CCCCCCcc
Q 042210 81 SDVRRDNY 88 (230)
Q Consensus 81 ~g~~p~~~ 88 (230)
.|-.|+..
T Consensus 106 ~~~~~~a~ 113 (153)
T TIGR02561 106 RDADADAV 113 (153)
T ss_pred hCCCHhHH
Confidence 55555543
Done!