Query 042210
Match_columns 230
No_of_seqs 178 out of 2337
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.1E-32 7E-37 237.9 14.2 178 3-183 8-216 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.8E-30 1.7E-34 223.0 15.8 155 2-158 43-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-20 4.2E-25 171.2 7.1 121 20-142 127-264 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 2.2E-20 7.4E-25 169.6 6.4 120 52-171 127-262 (1134)
5 2xpi_A Anaphase-promoting comp 99.7 1.2E-16 4E-21 140.3 9.0 209 2-226 289-521 (597)
6 2xpi_A Anaphase-promoting comp 99.7 7.5E-16 2.6E-20 135.2 12.4 201 2-216 322-546 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.1 3.2E-09 1.1E-13 88.2 16.5 201 2-215 118-368 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.1 4.4E-09 1.5E-13 87.3 16.1 197 2-215 84-334 (388)
9 2y4t_A DNAJ homolog subfamily 99.1 2.4E-09 8.2E-14 90.3 13.3 205 2-215 43-286 (450)
10 2y4t_A DNAJ homolog subfamily 99.0 3E-09 1E-13 89.7 13.0 197 2-215 77-324 (450)
11 3mkr_A Coatomer subunit epsilo 99.0 2.4E-09 8.1E-14 86.4 10.0 181 23-216 38-230 (291)
12 1b89_A Protein (clathrin heavy 98.9 1.6E-10 5.4E-15 97.9 1.8 169 19-212 60-233 (449)
13 3mkr_A Coatomer subunit epsilo 98.9 1.1E-07 3.9E-12 76.5 18.0 148 2-156 82-245 (291)
14 2ho1_A Type 4 fimbrial biogene 98.9 1.8E-07 6.2E-12 72.6 17.6 166 2-171 54-239 (252)
15 4eqf_A PEX5-related protein; a 98.9 1.2E-08 4E-13 84.0 11.0 198 2-215 82-310 (365)
16 2vq2_A PILW, putative fimbrial 98.8 5.7E-07 1.9E-11 68.0 18.2 174 2-179 25-217 (225)
17 3hym_B Cell division cycle pro 98.8 1.4E-07 4.6E-12 75.8 15.5 200 2-215 39-265 (330)
18 1fch_A Peroxisomal targeting s 98.8 1.5E-07 5.3E-12 76.9 15.9 199 2-213 81-357 (368)
19 3cv0_A Peroxisome targeting si 98.8 2.2E-07 7.5E-12 74.5 15.4 199 2-214 38-314 (327)
20 1b89_A Protein (clathrin heavy 98.8 2.7E-08 9.1E-13 84.3 9.6 152 2-171 78-233 (449)
21 3hym_B Cell division cycle pro 98.8 3.7E-07 1.3E-11 73.2 15.9 198 2-216 73-300 (330)
22 2q7f_A YRRB protein; TPR, prot 98.7 6.3E-07 2.2E-11 68.8 15.3 165 2-171 40-223 (243)
23 2gw1_A Mitochondrial precursor 98.7 3.9E-07 1.3E-11 77.8 15.2 198 2-215 23-333 (514)
24 2pl2_A Hypothetical conserved 98.6 1.4E-06 4.9E-11 66.7 15.2 181 18-214 3-213 (217)
25 2gw1_A Mitochondrial precursor 98.6 2.5E-07 8.6E-12 78.9 11.9 198 2-216 254-479 (514)
26 2ho1_A Type 4 fimbrial biogene 98.6 4.8E-07 1.7E-11 70.1 12.2 179 23-216 41-239 (252)
27 4eqf_A PEX5-related protein; a 98.6 8.4E-08 2.9E-12 78.8 8.0 166 2-171 116-311 (365)
28 3uq3_A Heat shock protein STI1 98.6 1.1E-06 3.6E-11 67.9 13.8 166 2-171 22-237 (258)
29 2vq2_A PILW, putative fimbrial 98.6 5.6E-07 1.9E-11 68.1 11.7 180 23-215 12-211 (225)
30 2fo7_A Synthetic consensus TPR 98.6 1.1E-06 3.9E-11 60.4 12.3 116 23-141 5-130 (136)
31 2q7f_A YRRB protein; TPR, prot 98.6 1.5E-07 5.1E-12 72.4 8.3 179 23-216 27-223 (243)
32 3fp2_A TPR repeat-containing p 98.5 5E-07 1.7E-11 77.7 10.8 198 2-216 260-492 (537)
33 1xnf_A Lipoprotein NLPI; TPR, 98.5 1.1E-06 3.7E-11 68.8 11.7 202 2-216 22-245 (275)
34 3as5_A MAMA; tetratricopeptide 98.5 7.4E-06 2.5E-10 59.6 15.2 146 23-171 12-174 (186)
35 3u4t_A TPR repeat-containing p 98.5 9.1E-06 3.1E-10 63.4 16.5 178 24-215 8-208 (272)
36 3ieg_A DNAJ homolog subfamily 98.5 1.1E-06 3.6E-11 71.2 11.3 81 60-141 128-215 (359)
37 1fch_A Peroxisomal targeting s 98.5 2.2E-06 7.7E-11 69.9 12.9 161 2-167 149-352 (368)
38 3ieg_A DNAJ homolog subfamily 98.5 3.1E-06 1.1E-10 68.4 13.3 206 2-216 20-264 (359)
39 3u4t_A TPR repeat-containing p 98.4 1E-05 3.5E-10 63.2 15.3 200 2-216 20-251 (272)
40 2ond_A Cleavage stimulation fa 98.4 1.6E-05 5.6E-10 63.9 16.8 165 2-170 81-270 (308)
41 3cv0_A Peroxisome targeting si 98.4 4.4E-06 1.5E-10 66.8 12.9 136 29-167 148-308 (327)
42 1xnf_A Lipoprotein NLPI; TPR, 98.4 7.9E-06 2.7E-10 63.7 13.7 187 2-209 60-269 (275)
43 1ouv_A Conserved hypothetical 98.4 2.8E-05 9.5E-10 61.1 16.8 194 2-216 23-252 (273)
44 3as5_A MAMA; tetratricopeptide 98.4 4.9E-06 1.7E-10 60.6 11.3 117 23-142 46-172 (186)
45 3vtx_A MAMA; tetratricopeptide 98.3 3.4E-05 1.2E-09 56.7 14.7 144 23-169 9-169 (184)
46 3uq3_A Heat shock protein STI1 98.3 9.3E-06 3.2E-10 62.5 11.4 180 23-216 9-237 (258)
47 2ond_A Cleavage stimulation fa 98.3 1.5E-05 5E-10 64.2 13.0 201 2-215 33-270 (308)
48 2fo7_A Synthetic consensus TPR 98.2 3.4E-05 1.2E-09 52.7 12.4 115 54-169 3-131 (136)
49 4abn_A Tetratricopeptide repea 98.2 1.3E-05 4.5E-10 68.8 11.9 144 23-170 106-287 (474)
50 2pl2_A Hypothetical conserved 98.2 1.2E-05 4E-10 61.5 10.3 131 3-139 57-210 (217)
51 3fp2_A TPR repeat-containing p 98.2 3E-05 1E-09 66.5 13.8 203 3-215 220-457 (537)
52 3vtx_A MAMA; tetratricopeptide 98.2 6.1E-05 2.1E-09 55.3 13.1 136 2-142 22-169 (184)
53 3nf1_A KLC 1, kinesin light ch 98.0 4.8E-05 1.6E-09 60.2 10.3 139 2-142 44-223 (311)
54 1ouv_A Conserved hypothetical 98.0 0.00092 3.1E-08 52.2 17.7 162 2-171 59-252 (273)
55 2ooe_A Cleavage stimulation fa 98.0 0.00017 5.9E-09 62.3 14.4 149 3-156 304-474 (530)
56 4gyw_A UDP-N-acetylglucosamine 98.0 0.00016 5.3E-09 65.5 14.1 143 23-169 13-173 (723)
57 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00019 6.6E-09 53.8 12.4 114 26-142 13-149 (213)
58 2ooe_A Cleavage stimulation fa 97.9 0.00015 5.2E-09 62.7 13.0 196 4-215 257-492 (530)
59 3edt_B KLC 2, kinesin light ch 97.9 2.2E-05 7.5E-10 61.1 6.3 118 23-142 47-197 (283)
60 3nf1_A KLC 1, kinesin light ch 97.9 3.9E-05 1.3E-09 60.7 7.5 146 23-170 31-224 (311)
61 3ro2_A PINS homolog, G-protein 97.8 0.00015 5.1E-09 57.6 10.6 200 2-214 22-291 (338)
62 2h6f_A Protein farnesyltransfe 97.8 0.00024 8.3E-09 59.3 11.7 174 23-212 101-302 (382)
63 4i17_A Hypothetical protein; T 97.8 0.002 6.8E-08 48.8 15.8 118 23-144 11-149 (228)
64 4a1s_A PINS, partner of inscut 97.7 0.0001 3.6E-09 61.0 8.7 200 2-214 65-331 (411)
65 3mv2_B Coatomer subunit epsilo 97.7 0.00045 1.5E-08 55.9 11.7 150 18-171 98-283 (310)
66 4abn_A Tetratricopeptide repea 97.7 0.00082 2.8E-08 57.5 14.1 145 2-151 120-298 (474)
67 4gyw_A UDP-N-acetylglucosamine 97.7 0.00054 1.8E-08 61.9 13.3 134 2-141 26-172 (723)
68 1na0_A Designed protein CTPR3; 97.7 0.00073 2.5E-08 45.3 11.0 87 55-142 12-105 (125)
69 2r5s_A Uncharacterized protein 97.7 0.00072 2.5E-08 49.4 11.6 143 23-170 10-173 (176)
70 3sf4_A G-protein-signaling mod 97.7 0.00026 9E-09 58.1 10.1 200 2-214 26-295 (406)
71 1na0_A Designed protein CTPR3; 97.6 0.0011 3.6E-08 44.5 11.2 100 23-125 13-122 (125)
72 1xi4_A Clathrin heavy chain; a 97.6 0.001 3.6E-08 63.6 14.1 171 23-212 1109-1306(1630)
73 2vsy_A XCC0866; transferase, g 97.6 0.00085 2.9E-08 58.5 12.7 135 2-142 6-156 (568)
74 2h6f_A Protein farnesyltransfe 97.5 0.0053 1.8E-07 51.1 16.0 192 2-212 114-344 (382)
75 2vsy_A XCC0866; transferase, g 97.5 0.0018 6.1E-08 56.5 13.2 136 34-171 2-158 (568)
76 4i17_A Hypothetical protein; T 97.5 0.0025 8.6E-08 48.2 12.7 160 2-170 24-209 (228)
77 1a17_A Serine/threonine protei 97.5 0.0018 6.3E-08 45.9 11.3 82 33-142 25-109 (166)
78 3sf4_A G-protein-signaling mod 97.5 0.00021 7.3E-09 58.6 6.9 181 23-214 91-335 (406)
79 2pzi_A Probable serine/threoni 97.5 0.0053 1.8E-07 55.0 16.3 150 2-155 408-578 (681)
80 3ro2_A PINS homolog, G-protein 97.5 0.00029 1E-08 55.8 7.2 182 23-215 87-332 (338)
81 3qou_A Protein YBBN; thioredox 97.4 0.0028 9.5E-08 50.3 12.3 141 23-167 121-281 (287)
82 3edt_B KLC 2, kinesin light ch 97.4 0.0028 9.7E-08 48.8 11.8 138 2-141 102-279 (283)
83 3qky_A Outer membrane assembly 97.3 0.0074 2.5E-07 46.7 13.6 147 23-171 19-225 (261)
84 2vyi_A SGTA protein; chaperone 97.3 0.0034 1.2E-07 42.2 10.4 82 33-142 24-108 (131)
85 3urz_A Uncharacterized protein 97.3 0.0063 2.2E-07 45.7 12.8 123 25-151 60-196 (208)
86 3mv2_B Coatomer subunit epsilo 97.3 0.0029 1E-07 51.1 11.2 114 23-142 140-281 (310)
87 2vyi_A SGTA protein; chaperone 97.3 0.0033 1.1E-07 42.3 10.1 92 52-171 12-110 (131)
88 4a1s_A PINS, partner of inscut 97.3 0.00033 1.1E-08 57.9 5.8 177 27-214 56-291 (411)
89 4e6h_A MRNA 3'-END-processing 97.3 0.0093 3.2E-07 53.5 15.3 148 2-154 360-550 (679)
90 1elr_A TPR2A-domain of HOP; HO 97.2 0.0053 1.8E-07 41.3 10.8 100 27-151 12-118 (131)
91 3qou_A Protein YBBN; thioredox 97.2 0.0085 2.9E-07 47.5 13.0 133 2-139 134-280 (287)
92 3gw4_A Uncharacterized protein 97.2 0.0016 5.4E-08 48.0 8.2 109 33-141 4-134 (203)
93 2lni_A Stress-induced-phosphop 97.2 0.0049 1.7E-07 41.7 10.2 82 33-142 28-112 (133)
94 2lni_A Stress-induced-phosphop 97.2 0.0056 1.9E-07 41.5 10.5 92 52-171 16-114 (133)
95 2e2e_A Formate-dependent nitri 97.2 0.0014 4.8E-08 47.6 7.7 112 33-145 22-148 (177)
96 2xm6_A Protein corresponding t 97.2 0.02 7E-07 48.7 15.9 106 34-142 128-251 (490)
97 2xm6_A Protein corresponding t 97.1 0.019 6.5E-07 48.9 15.5 198 2-216 60-289 (490)
98 4ga2_A E3 SUMO-protein ligase 97.1 0.0014 4.8E-08 46.8 7.1 106 33-140 9-126 (150)
99 1elw_A TPR1-domain of HOP; HOP 97.1 0.0098 3.4E-07 39.1 10.9 30 113-142 71-100 (118)
100 2yhc_A BAMD, UPF0169 lipoprote 97.1 0.025 8.6E-07 42.8 14.2 141 27-171 12-214 (225)
101 3ulq_A Response regulator aspa 97.1 0.0019 6.5E-08 53.1 8.3 202 2-214 120-367 (383)
102 1p5q_A FKBP52, FK506-binding p 97.1 0.0057 2E-07 49.8 10.9 88 24-141 152-257 (336)
103 3u3w_A Transcriptional activat 97.1 0.018 6.2E-07 45.5 13.6 115 26-142 82-224 (293)
104 4g1t_A Interferon-induced prot 97.0 0.0061 2.1E-07 51.2 11.4 94 113-218 246-366 (472)
105 2fbn_A 70 kDa peptidylprolyl i 97.0 0.0021 7E-08 47.8 6.9 147 23-171 8-187 (198)
106 1qqe_A Vesicular transport pro 96.9 0.045 1.5E-06 43.2 15.0 56 24-81 122-187 (292)
107 1hh8_A P67PHOX, NCF-2, neutrop 96.9 0.0083 2.8E-07 44.6 10.1 84 55-142 9-99 (213)
108 3ulq_A Response regulator aspa 96.9 0.019 6.6E-07 47.0 13.2 145 23-169 188-367 (383)
109 3q49_B STIP1 homology and U bo 96.9 0.014 4.6E-07 40.0 10.5 88 54-142 11-105 (137)
110 3qky_A Outer membrane assembly 96.9 0.012 4.1E-07 45.5 11.2 138 2-145 32-228 (261)
111 2dba_A Smooth muscle cell asso 96.9 0.025 8.4E-07 39.0 11.7 89 52-142 28-127 (148)
112 3q15_A PSP28, response regulat 96.9 0.0035 1.2E-07 51.5 8.2 138 2-141 118-288 (378)
113 3ro3_A PINS homolog, G-protein 96.9 0.0078 2.7E-07 41.9 8.9 115 23-139 13-154 (164)
114 3gw4_A Uncharacterized protein 96.8 0.016 5.4E-07 42.4 10.6 118 23-142 30-175 (203)
115 2kck_A TPR repeat; tetratricop 96.8 0.0079 2.7E-07 39.2 8.1 92 23-142 10-105 (112)
116 2vgx_A Chaperone SYCD; alterna 96.8 0.014 4.8E-07 41.4 9.7 87 58-146 27-123 (148)
117 4gco_A Protein STI-1; structur 96.8 0.016 5.4E-07 39.9 9.7 82 33-142 25-109 (126)
118 2xcb_A PCRH, regulatory protei 96.7 0.011 3.8E-07 41.2 9.0 80 61-142 27-114 (142)
119 3gyz_A Chaperone protein IPGC; 96.7 0.011 3.6E-07 42.5 8.9 90 54-145 38-137 (151)
120 1a17_A Serine/threonine protei 96.7 0.045 1.5E-06 38.4 12.2 90 54-171 15-111 (166)
121 3urz_A Uncharacterized protein 96.7 0.014 4.7E-07 43.8 9.7 145 33-182 16-195 (208)
122 2kck_A TPR repeat; tetratricop 96.7 0.025 8.6E-07 36.7 9.9 76 2-81 23-106 (112)
123 3sz7_A HSC70 cochaperone (SGT) 96.7 0.015 5.2E-07 41.5 9.4 87 55-142 14-107 (164)
124 2r5s_A Uncharacterized protein 96.6 0.016 5.3E-07 42.1 9.4 131 3-139 24-169 (176)
125 3u3w_A Transcriptional activat 96.6 0.054 1.8E-06 42.7 13.1 114 25-140 121-263 (293)
126 4g1t_A Interferon-induced prot 96.6 0.11 3.8E-06 43.4 15.7 202 2-216 192-460 (472)
127 3rjv_A Putative SEL1 repeat pr 96.6 0.14 4.9E-06 38.2 15.3 160 3-171 4-198 (212)
128 3upv_A Heat shock protein STI1 96.6 0.029 1E-06 37.9 10.0 81 33-141 16-99 (126)
129 2yhc_A BAMD, UPF0169 lipoprote 96.6 0.099 3.4E-06 39.4 13.9 135 2-142 21-212 (225)
130 1qqe_A Vesicular transport pro 96.6 0.03 1E-06 44.3 11.3 118 23-142 41-186 (292)
131 4ga2_A E3 SUMO-protein ligase 96.5 0.041 1.4E-06 38.9 10.6 103 23-129 35-149 (150)
132 1elw_A TPR1-domain of HOP; HOP 96.4 0.041 1.4E-06 35.9 9.8 87 23-112 8-99 (118)
133 4f3v_A ESX-1 secretion system 96.4 0.028 9.7E-07 44.7 10.1 117 25-144 108-240 (282)
134 1xi4_A Clathrin heavy chain; a 96.4 0.14 4.8E-06 49.5 16.0 142 18-173 1165-1345(1630)
135 2qfc_A PLCR protein; TPR, HTH, 96.4 0.077 2.6E-06 41.7 12.6 116 24-141 80-223 (293)
136 2xev_A YBGF; tetratricopeptide 96.3 0.045 1.5E-06 36.8 9.8 85 33-142 14-104 (129)
137 2fbn_A 70 kDa peptidylprolyl i 96.3 0.02 6.7E-07 42.3 8.5 114 25-141 44-184 (198)
138 3q49_B STIP1 homology and U bo 96.3 0.028 9.7E-07 38.3 8.8 87 23-112 13-104 (137)
139 2c2l_A CHIP, carboxy terminus 96.3 0.017 5.9E-07 45.6 8.5 86 23-112 8-99 (281)
140 3k9i_A BH0479 protein; putativ 96.3 0.0034 1.2E-07 42.4 3.6 30 113-142 60-89 (117)
141 1p5q_A FKBP52, FK506-binding p 96.3 0.062 2.1E-06 43.5 11.7 105 52-169 147-258 (336)
142 4gco_A Protein STI-1; structur 96.2 0.042 1.4E-06 37.6 9.2 80 2-87 30-114 (126)
143 2xcb_A PCRH, regulatory protei 96.2 0.04 1.4E-06 38.3 9.2 85 25-112 24-113 (142)
144 3gyz_A Chaperone protein IPGC; 96.2 0.025 8.4E-07 40.5 8.0 86 23-112 40-131 (151)
145 2pzi_A Probable serine/threoni 96.2 0.033 1.1E-06 49.9 10.5 135 33-170 403-559 (681)
146 1wao_1 Serine/threonine protei 96.2 0.0095 3.2E-07 51.0 6.6 104 33-138 18-134 (477)
147 2qfc_A PLCR protein; TPR, HTH, 96.2 0.15 5.1E-06 40.1 13.3 112 27-140 123-263 (293)
148 1elr_A TPR2A-domain of HOP; HO 96.2 0.044 1.5E-06 36.5 8.9 85 2-92 21-117 (131)
149 2c2l_A CHIP, carboxy terminus 96.1 0.14 5E-06 40.1 12.8 132 2-142 21-163 (281)
150 2dba_A Smooth muscle cell asso 96.0 0.08 2.7E-06 36.2 10.0 86 23-112 32-126 (148)
151 2e2e_A Formate-dependent nitri 96.0 0.072 2.5E-06 38.2 10.1 105 2-112 27-142 (177)
152 3k9i_A BH0479 protein; putativ 96.0 0.0055 1.9E-07 41.3 3.7 94 2-97 7-107 (117)
153 4e6h_A MRNA 3'-END-processing 96.0 0.059 2E-06 48.3 11.1 151 2-156 395-585 (679)
154 1hz4_A MALT regulatory protein 96.0 0.1 3.6E-06 42.2 11.9 137 2-141 31-201 (373)
155 1hxi_A PEX5, peroxisome target 96.0 0.043 1.5E-06 37.3 8.1 30 113-142 84-113 (121)
156 2vgx_A Chaperone SYCD; alterna 95.9 0.04 1.4E-06 38.9 8.1 87 23-112 25-116 (148)
157 3sz7_A HSC70 cochaperone (SGT) 95.9 0.1 3.4E-06 37.1 10.4 87 23-112 15-106 (164)
158 3n71_A Histone lysine methyltr 95.9 0.015 5.3E-07 50.0 6.7 86 33-141 321-420 (490)
159 3rjv_A Putative SEL1 repeat pr 95.9 0.071 2.4E-06 40.0 9.8 167 40-218 5-200 (212)
160 2ifu_A Gamma-SNAP; membrane fu 95.9 0.32 1.1E-05 38.5 14.1 164 2-168 8-222 (307)
161 2ifu_A Gamma-SNAP; membrane fu 95.9 0.041 1.4E-06 43.8 8.7 116 23-141 80-222 (307)
162 1kt0_A FKBP51, 51 kDa FK506-bi 95.7 0.071 2.4E-06 45.2 10.2 55 24-80 273-345 (457)
163 3upv_A Heat shock protein STI1 95.6 0.074 2.5E-06 35.8 8.3 76 2-81 21-101 (126)
164 3q15_A PSP28, response regulat 95.6 0.12 4.3E-06 42.0 11.1 145 23-169 186-364 (378)
165 3e4b_A ALGK; tetratricopeptide 95.5 0.43 1.5E-05 40.2 14.2 184 17-217 173-389 (452)
166 1wao_1 Serine/threonine protei 95.5 0.33 1.1E-05 41.4 13.5 102 2-109 23-134 (477)
167 4b4t_Q 26S proteasome regulato 95.4 0.21 7.3E-06 41.1 11.8 138 2-141 21-202 (434)
168 1hz4_A MALT regulatory protein 95.4 0.48 1.6E-05 38.2 13.7 118 23-142 139-281 (373)
169 4gcn_A Protein STI-1; structur 95.2 0.33 1.1E-05 33.0 10.5 91 27-141 16-110 (127)
170 2kat_A Uncharacterized protein 95.1 0.16 5.4E-06 33.5 8.4 75 2-80 2-81 (115)
171 3ro3_A PINS homolog, G-protein 95.1 0.16 5.4E-06 34.9 8.8 88 54-141 11-116 (164)
172 3rkv_A Putative peptidylprolyl 95.1 0.27 9.4E-06 34.6 10.1 58 89-146 65-131 (162)
173 2if4_A ATFKBP42; FKBP-like, al 94.9 0.056 1.9E-06 43.9 6.7 127 26-171 186-329 (338)
174 2xev_A YBGF; tetratricopeptide 94.9 0.17 5.8E-06 33.8 8.3 80 2-87 19-109 (129)
175 3n71_A Histone lysine methyltr 94.7 0.14 4.7E-06 44.0 8.8 57 113-169 350-421 (490)
176 1ihg_A Cyclophilin 40; ppiase 94.6 0.18 6.2E-06 41.5 9.0 88 25-142 229-335 (370)
177 1hxi_A PEX5, peroxisome target 94.3 0.18 6.3E-06 34.0 7.2 84 25-112 23-112 (121)
178 3mkq_A Coatomer beta'-subunit; 94.3 0.41 1.4E-05 42.9 11.4 99 33-142 664-764 (814)
179 2uy1_A Cleavage stimulation fa 94.1 2.5 8.6E-05 36.1 15.8 95 55-153 289-392 (493)
180 1kt0_A FKBP51, 51 kDa FK506-bi 94.1 0.55 1.9E-05 39.7 11.1 101 53-155 269-395 (457)
181 4gcn_A Protein STI-1; structur 94.1 0.31 1.1E-05 33.1 8.0 82 2-89 25-118 (127)
182 2l6j_A TPR repeat-containing p 93.9 0.12 4E-06 33.6 5.4 57 23-81 8-67 (111)
183 2if4_A ATFKBP42; FKBP-like, al 93.8 0.23 7.8E-06 40.2 7.9 102 54-166 181-289 (338)
184 2l6j_A TPR repeat-containing p 93.7 0.053 1.8E-06 35.3 3.3 63 52-142 4-66 (111)
185 3e4b_A ALGK; tetratricopeptide 93.7 0.68 2.3E-05 39.0 11.0 143 2-151 20-182 (452)
186 3ma5_A Tetratricopeptide repea 93.6 0.33 1.1E-05 31.3 7.2 56 23-80 11-69 (100)
187 3qww_A SET and MYND domain-con 93.5 0.37 1.3E-05 40.7 9.0 75 66-140 312-408 (433)
188 3mkq_A Coatomer beta'-subunit; 93.5 0.11 3.9E-06 46.6 6.1 98 33-144 611-711 (814)
189 1na3_A Designed protein CTPR2; 93.4 0.51 1.8E-05 29.0 7.7 57 23-81 13-72 (91)
190 2kat_A Uncharacterized protein 93.4 0.33 1.1E-05 31.9 7.1 65 50-142 17-81 (115)
191 3dra_A Protein farnesyltransfe 93.3 2.3 7.8E-05 34.0 13.0 197 4-214 52-286 (306)
192 4b4t_Q 26S proteasome regulato 93.3 0.85 2.9E-05 37.4 10.9 140 27-168 12-202 (434)
193 3qwp_A SET and MYND domain-con 93.0 0.27 9.4E-06 41.4 7.4 83 59-141 294-398 (429)
194 3mkq_B Coatomer subunit alpha; 93.0 2 6.8E-05 31.5 11.3 99 33-142 17-117 (177)
195 1ihg_A Cyclophilin 40; ppiase 92.9 0.57 1.9E-05 38.5 9.1 104 54-170 225-336 (370)
196 2uy1_A Cleavage stimulation fa 92.2 1.4 4.6E-05 37.8 10.8 111 25-141 292-411 (493)
197 1na3_A Designed protein CTPR2; 92.0 1 3.6E-05 27.5 7.7 62 53-142 10-71 (91)
198 4f3v_A ESX-1 secretion system 91.9 1.1 3.9E-05 35.4 9.2 113 57-171 107-238 (282)
199 3dra_A Protein farnesyltransfe 91.6 4.3 0.00015 32.4 13.9 134 35-169 124-286 (306)
200 3ma5_A Tetratricopeptide repea 90.8 1.9 6.4E-05 27.5 8.1 51 51-103 6-57 (100)
201 2hr2_A Hypothetical protein; a 90.5 1.3 4.4E-05 31.9 7.5 88 27-142 19-130 (159)
202 2p58_C Putative type III secre 90.3 1.7 5.9E-05 28.7 7.1 77 2-83 24-100 (116)
203 2uwj_G Type III export protein 89.7 1.6 5.4E-05 28.8 6.6 77 2-83 23-99 (115)
204 3rkv_A Putative peptidylprolyl 89.2 0.96 3.3E-05 31.6 6.1 56 23-80 67-125 (162)
205 2kc7_A BFR218_protein; tetratr 89.0 0.97 3.3E-05 28.5 5.5 53 27-81 8-64 (99)
206 1klx_A Cysteine rich protein B 88.9 1.9 6.7E-05 29.5 7.4 14 127-140 74-87 (138)
207 3qww_A SET and MYND domain-con 88.1 0.72 2.5E-05 38.9 5.5 54 23-78 344-408 (433)
208 1dce_A Protein (RAB geranylger 86.6 11 0.00039 32.7 12.4 45 37-81 89-138 (567)
209 3qwp_A SET and MYND domain-con 85.3 2.1 7.3E-05 35.9 6.8 86 25-112 293-398 (429)
210 2ff4_A Probable regulatory pro 85.2 1.8 6.1E-05 35.8 6.2 64 24-89 176-247 (388)
211 3lvg_A Clathrin heavy chain 1; 83.3 0.23 7.7E-06 42.8 -0.0 172 23-211 58-254 (624)
212 3bee_A Putative YFRE protein; 80.6 8.6 0.0003 24.4 7.1 49 104-153 28-83 (93)
213 3eu9_A Huntingtin-interacting 80.1 3 0.0001 30.8 5.4 163 5-178 22-206 (240)
214 1klx_A Cysteine rich protein B 80.0 9.7 0.00033 25.8 7.6 104 34-142 8-125 (138)
215 1v54_E Cytochrome C oxidase po 79.8 6.6 0.00023 25.9 6.0 32 49-80 42-73 (109)
216 3kea_A K1L; tropism, ANK repea 79.5 6.1 0.00021 30.6 7.2 162 6-176 14-188 (285)
217 1v54_E Cytochrome C oxidase po 78.9 3.7 0.00013 27.1 4.6 55 5-61 30-88 (109)
218 3kea_A K1L; tropism, ANK repea 78.3 4.6 0.00016 31.3 6.1 167 5-179 44-225 (285)
219 2kc7_A BFR218_protein; tetratr 77.7 5.3 0.00018 24.8 5.3 27 116-142 37-63 (99)
220 3dss_A Geranylgeranyl transfer 77.6 26 0.00089 28.2 12.0 61 36-97 125-189 (331)
221 3bee_A Putative YFRE protein; 76.9 11 0.00039 23.8 6.7 46 37-82 25-73 (93)
222 1wdy_A 2-5A-dependent ribonucl 76.6 8.4 0.00029 29.1 7.1 163 5-176 18-213 (285)
223 3b7b_A Euchromatic histone-lys 75.5 4.5 0.00015 30.0 5.1 190 6-212 25-233 (237)
224 2hr2_A Hypothetical protein; a 73.7 20 0.00067 25.6 7.8 84 2-89 28-144 (159)
225 3mkq_B Coatomer subunit alpha; 73.3 24 0.00082 25.7 8.8 94 62-164 15-112 (177)
226 1wdy_A 2-5A-dependent ribonucl 72.4 8 0.00027 29.2 6.0 144 23-176 6-176 (285)
227 1zu2_A Mitochondrial import re 71.6 11 0.00036 27.0 5.9 93 2-100 19-137 (158)
228 1k1a_A B-cell lymphoma 3-encod 70.7 6.7 0.00023 29.0 5.1 49 122-171 121-173 (241)
229 1pc2_A Mitochondria fission pr 70.3 13 0.00043 26.4 6.0 74 3-80 16-99 (152)
230 4gns_B Protein CSD3, chitin bi 70.0 64 0.0022 29.2 12.6 116 24-141 253-398 (754)
231 2y69_E Cytochrome C oxidase su 69.5 15 0.00052 25.6 6.0 40 73-112 74-115 (152)
232 2p58_C Putative type III secre 68.8 5.6 0.00019 26.2 3.5 35 121-155 47-81 (116)
233 3aji_A 26S proteasome non-ATPa 68.1 8.8 0.0003 28.2 5.2 141 25-176 9-166 (231)
234 2zu6_B Programmed cell death p 67.4 37 0.0013 27.0 8.9 62 115-176 167-237 (307)
235 3hra_A Ankyrin repeat family p 66.5 7.8 0.00027 27.7 4.6 139 33-179 14-175 (201)
236 2y69_E Cytochrome C oxidase su 66.4 10 0.00034 26.5 4.6 78 17-97 49-132 (152)
237 1k1a_A B-cell lymphoma 3-encod 65.6 13 0.00046 27.3 5.9 168 5-178 26-212 (241)
238 2nsz_A Programmed cell death p 63.5 32 0.0011 23.4 7.3 71 23-99 11-86 (129)
239 2uwj_G Type III export protein 63.3 5.2 0.00018 26.3 2.5 35 121-155 46-80 (115)
240 2v5f_A Prolyl 4-hydroxylase su 61.2 28 0.00095 22.1 6.1 59 25-87 11-79 (104)
241 1zu2_A Mitochondrial import re 60.6 14 0.00048 26.3 4.8 57 113-171 79-148 (158)
242 2v5f_A Prolyl 4-hydroxylase su 60.3 28 0.00096 22.1 6.0 70 55-145 8-79 (104)
243 1wy6_A Hypothetical protein ST 59.5 43 0.0015 23.6 7.5 33 51-83 124-156 (172)
244 3q7a_A Farnesyltransferase alp 58.7 71 0.0024 25.8 10.9 118 33-151 66-207 (349)
245 3ljn_A Hypothetical protein; a 58.6 6 0.00021 31.7 2.9 76 6-84 34-113 (364)
246 2ion_A PDCD4, programmed cell 57.8 28 0.00097 24.5 6.0 71 23-99 13-88 (152)
247 3dss_A Geranylgeranyl transfer 55.3 79 0.0027 25.3 13.5 114 37-151 90-233 (331)
248 1n11_A Ankyrin; clathrin, BAND 54.9 42 0.0015 27.3 7.6 11 161-171 324-334 (437)
249 3u64_A Protein TP_0956; tetrat 54.9 52 0.0018 26.1 7.5 64 23-88 203-278 (301)
250 1oai_A Nuclear RNA export fact 52.7 11 0.00039 21.9 2.6 24 65-88 33-57 (59)
251 1dce_A Protein (RAB geranylger 52.5 1.1E+02 0.0039 26.3 15.1 118 33-151 41-184 (567)
252 1pc2_A Mitochondria fission pr 52.3 59 0.002 22.9 7.9 28 117-145 75-104 (152)
253 1n11_A Ankyrin; clathrin, BAND 52.0 11 0.00036 31.0 3.4 40 6-47 28-70 (437)
254 1wgl_A TOLL-interacting protei 49.9 36 0.0012 19.7 4.6 49 37-87 9-58 (59)
255 3ygs_P Procaspase 9; apoptosis 47.6 38 0.0013 21.7 4.9 39 35-73 51-89 (97)
256 1ug3_A EIF4GI, eukaryotic prot 46.8 96 0.0033 24.8 8.2 59 23-83 15-77 (339)
257 2d2s_A Exocyst complex compone 46.6 92 0.0032 23.6 7.6 29 113-141 90-118 (235)
258 3l6a_A Eukaryotic translation 46.3 1.2E+02 0.004 24.7 9.4 60 23-84 16-80 (364)
259 3utm_A Tankyrase-1; tankyrase, 45.7 1E+02 0.0035 23.7 8.7 21 24-46 60-80 (351)
260 3u64_A Protein TP_0956; tetrat 44.5 1.2E+02 0.004 24.1 8.4 45 113-157 198-251 (301)
261 2f8y_A Notch homolog 1, transl 44.3 84 0.0029 22.4 7.8 22 23-46 26-47 (223)
262 2ff4_A Probable regulatory pro 44.2 44 0.0015 27.3 5.9 89 54-142 114-233 (388)
263 3ygs_P Procaspase 9; apoptosis 42.6 42 0.0014 21.5 4.5 41 128-168 51-91 (97)
264 1oy3_D Transcription factor in 41.0 51 0.0017 24.6 5.6 88 120-220 161-252 (282)
265 3q7a_A Farnesyltransferase alp 40.3 1.4E+02 0.0049 24.0 14.2 74 3-80 72-153 (349)
266 3eiq_C Programmed cell death p 39.5 98 0.0033 25.2 7.1 71 23-99 221-296 (358)
267 2fe3_A Peroxide operon regulat 39.5 87 0.003 21.5 6.1 8 104-111 40-47 (145)
268 3ly7_A Transcriptional activat 39.2 1.6E+02 0.0054 24.1 8.4 71 49-148 274-346 (372)
269 4gns_B Protein CSD3, chitin bi 39.1 47 0.0016 30.1 5.6 51 27-79 345-398 (754)
270 2wpv_A GET4, UPF0363 protein Y 38.7 1.5E+02 0.005 23.6 12.8 76 63-138 64-158 (312)
271 4b4t_R RPN7, 26S proteasome re 38.5 1.6E+02 0.0055 24.3 8.6 56 23-80 135-196 (429)
272 3ljn_A Hypothetical protein; a 38.4 67 0.0023 25.3 6.1 140 23-171 21-196 (364)
273 2b7e_A PRE-mRNA processing pro 38.1 44 0.0015 19.4 3.5 35 68-103 2-38 (59)
274 3b7b_A Euchromatic histone-lys 38.0 34 0.0012 24.9 4.1 144 23-177 12-172 (237)
275 1bd8_A P19INK4D CDK4/6 inhibit 37.8 28 0.00096 23.5 3.3 46 125-171 43-91 (156)
276 4b4t_R RPN7, 26S proteasome re 37.5 1.2E+02 0.0039 25.2 7.5 86 54-141 133-235 (429)
277 4b93_B Ankyrin repeat domain-c 35.4 67 0.0023 24.4 5.4 21 23-46 13-33 (269)
278 3eiq_C Programmed cell death p 35.1 1.8E+02 0.0062 23.6 12.7 59 115-173 218-285 (358)
279 2zu6_B Programmed cell death p 34.6 1.1E+02 0.0037 24.2 6.6 71 23-99 170-245 (307)
280 3aji_A 26S proteasome non-ATPa 31.1 37 0.0013 24.7 3.2 115 58-176 9-133 (231)
281 2ko4_A Mediator of RNA polymer 30.8 87 0.003 19.4 4.1 36 42-77 24-61 (81)
282 4g8k_A 2-5A-dependent ribonucl 30.7 1.8E+02 0.0063 22.3 10.1 144 25-177 171-329 (337)
283 3ly7_A Transcriptional activat 30.1 2.3E+02 0.0077 23.2 11.7 67 113-182 276-348 (372)
284 2o03_A Probable zinc uptake re 30.0 70 0.0024 21.5 4.2 46 58-103 16-61 (131)
285 3mwm_A ZUR, putative metal upt 29.7 62 0.0021 22.1 3.9 46 58-103 19-64 (139)
286 4ets_A Ferric uptake regulatio 29.2 1.2E+02 0.0042 21.2 5.6 33 78-111 24-58 (162)
287 2f8y_A Notch homolog 1, transl 28.8 1.1E+02 0.0039 21.7 5.6 75 6-87 39-120 (223)
288 4a1g_A Mitotic checkpoint seri 27.3 1.2E+02 0.0041 21.3 5.0 61 23-85 68-134 (152)
289 3lvg_A Clathrin heavy chain 1; 27.1 16 0.00055 31.6 0.5 107 19-134 82-219 (624)
290 2xig_A Ferric uptake regulatio 26.6 1.6E+02 0.0054 20.3 6.0 8 104-111 45-52 (150)
291 3esl_A Checkpoint serine/threo 26.4 1.8E+02 0.006 21.6 6.0 61 2-64 96-158 (202)
292 2ftc_L MRPL20 protein; mitocho 26.2 78 0.0027 21.2 3.7 44 80-123 66-112 (118)
293 2p1h_A APAF-1, apoptotic prote 26.2 1.2E+02 0.0042 18.8 7.5 39 33-71 48-86 (94)
294 3lpz_A GET4 (YOR164C homolog); 25.6 2.6E+02 0.009 22.4 14.5 102 24-138 40-160 (336)
295 2rfa_A Transient receptor pote 25.4 31 0.0011 25.1 1.8 42 33-75 12-57 (232)
296 2wvi_A Mitotic checkpoint seri 25.2 1.3E+02 0.0046 21.3 5.0 48 38-85 77-129 (164)
297 3utm_A Tankyrase-1; tankyrase, 24.3 2.4E+02 0.0081 21.5 9.4 14 33-46 33-46 (351)
298 1mzb_A Ferric uptake regulatio 24.1 87 0.003 21.1 3.8 8 104-111 37-44 (136)
299 3twr_A Tankyrase-2; ankyrin re 23.8 91 0.0031 21.0 4.0 125 24-182 10-141 (165)
300 4g8k_A 2-5A-dependent ribonucl 23.1 2.6E+02 0.0088 21.5 7.8 133 6-144 182-328 (337)
301 2nsz_A Programmed cell death p 23.0 1.8E+02 0.006 19.5 6.2 25 55-79 10-34 (129)
302 2ghj_A 50S ribosomal protein L 22.8 81 0.0028 21.2 3.3 42 82-123 66-110 (118)
303 2etb_A Transient receptor pote 22.5 1.8E+02 0.0062 21.2 5.8 117 59-177 6-167 (256)
304 3eyy_A Putative iron uptake re 22.2 1.8E+02 0.0063 19.8 5.3 13 70-82 35-47 (145)
305 1wty_A Hypothetical protein TT 22.0 1.7E+02 0.006 19.1 6.1 71 38-112 5-79 (119)
306 4b4t_P 26S proteasome regulato 21.8 3.4E+02 0.012 22.4 8.4 86 56-141 141-245 (445)
307 4aez_C MAD3, mitotic spindle c 21.8 1.6E+02 0.0055 22.1 5.1 61 23-85 117-183 (223)
308 3bu8_A Telomeric repeat-bindin 21.7 2.3E+02 0.0078 21.3 5.8 20 26-47 121-140 (235)
309 3cqc_A Nuclear pore complex pr 21.4 83 0.0028 24.4 3.6 29 114-142 34-62 (270)
310 2ion_A PDCD4, programmed cell 21.1 1.7E+02 0.0057 20.4 4.8 26 54-79 11-36 (152)
311 3d9h_A CDNA FLJ77766, highly s 21.0 2.7E+02 0.0092 20.9 7.8 164 6-179 73-252 (285)
312 2zjr_N 50S ribosomal protein L 21.0 75 0.0025 21.4 2.8 45 79-123 65-112 (118)
313 1zbp_A Hypothetical protein VP 20.8 1.4E+02 0.0049 23.2 4.7 108 33-140 9-126 (273)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2.1e-32 Score=237.94 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCC---------
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDS--------- 67 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~--------- 67 (230)
.+..+...+++.+..+++.. +.+|++|+ |.|++++|.++|++|. +||.++||+||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~--k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCS--KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ----------------CHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 45677888888888776554 88999999 9999999999999998 8999999999999998765
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 68 ~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
++.|.++|++|+..|+.||..||++||++|++.|++ |.++|+.|. |..+||+||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999999 999999998 999999999999999999999999999
Q ss_pred ccC----CChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhh
Q 042210 140 SCE----DDDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGL 183 (230)
Q Consensus 140 m~~----~~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l 183 (230)
|.+ ||..|||+||.+|+. ++|.+++++|.+.+ ..|+..|++.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l 216 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMI 216 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHH
Confidence 985 999999999999885 57999999999998 89999999983
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.8e-30 Score=223.03 Aligned_cols=155 Identities=9% Similarity=0.005 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCC---------hHHHHHHHHhcC----CCChhhHHHHHHHHHhcCC
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGD---------LKYECKVFRKIT----QPSVFLWNTMIKGYSRIDS 67 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~---------~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~ 67 (230)
++|.++|++|++.|++||..+ |+||.+|+ +.+. +++|.++|++|. .||.++||+||.+|++.|+
T Consensus 43 ~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~--~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~ 120 (501)
T 4g26_A 43 LEALRLYDEARRNGVQLSQYHYNVLLYVCS--LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD 120 (501)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHT--TCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--hCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Confidence 679999999999999999999 99999999 7664 688999999997 8999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 68 HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 68 ~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
+++|.++|++|++.|+.||..||++||.+|++.|++ |.++|+.|. |..+|++||++|++.|++++|.++|++
T Consensus 121 ~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 121 PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999998 999999999999999999999999999
Q ss_pred ccC----CChhhhHHHHHHhhhc
Q 042210 140 SCE----DDDGLHELIRIKAVDD 158 (230)
Q Consensus 140 m~~----~~~~t~n~li~~~~~~ 158 (230)
|++ |+..||++++..++..
T Consensus 201 Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 201 LRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhCCCcCHHHHHHHHHHHhcC
Confidence 985 9999999999988753
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=171.24 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=110.6
Q ss_pred CcH-HHHHHHHhhhccCChHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH
Q 042210 20 PHC-PKQTRYLLLYEKGDLKYECKVFRKIT-------QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP 91 (230)
Q Consensus 20 ~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~ 91 (230)
..+ |++|++|+ +.|++++|.++|++|. .||++|||+||++||+.|++++|.++|++|++.|+.||.+||+
T Consensus 127 ~~TynaLIdglc--K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCL--LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 346 99999999 9999999999998764 7999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCch---hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 92 FLFKGFTRDIAG---SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 92 ~ll~~~~~~~~~---a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+||+++|+.|+. |.+++++|. |.++||++++++.+.+-++.+++++.++.-
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCC
Confidence 999999999974 789999998 999999999999998888888888776654
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=169.63 Aligned_cols=120 Identities=6% Similarity=-0.110 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh------hHhHHHHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLK---SDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM------RVFVQNAL 120 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~---~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~------~~~~~~~l 120 (230)
..|||++|++|++.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++ |.++|++|. |++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35899999999999999999999988764 58999999999999999999999 999999998 99999999
Q ss_pred HHHHHhcCCH-HHHHHHHhhccC----CChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 121 ISTYCLCGEV-DMARGIFYMSCE----DDDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 121 i~~y~~~g~~-~~A~~vf~~m~~----~~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
|+++||.|+. ++|.++|++|.+ ||.+|||+++.++.++..++..+++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999985 789999999986 99999999999999999999888884443
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.67 E-value=1.2e-16 Score=140.34 Aligned_cols=209 Identities=8% Similarity=-0.046 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|.++|+.+.+. .++..+ +.+..+|. +.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|..+|++
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLF--VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4677888877665 467777 99999999 9999999999999986 45788999999999999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhh
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGL 147 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t 147 (230)
+.+. .+.+..+|..+..+|.+.|++ |.++|+.+. +..+|+.++.+|.+.|++++|.++|+++.+ ++..+
T Consensus 365 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 365 LVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp HHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred HHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 9853 344678999999999999999 999999886 688999999999999999999999998865 47789
Q ss_pred hHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccccccc----CCCc
Q 042210 148 HELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEH----SQDD 219 (230)
Q Consensus 148 ~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~----~~~~ 219 (230)
|+.+...+.. ++|.+.|+++.+.. ..+..++..+ .. .+.+.|++++|.+++..+.+. +..|
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l--~~-------~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNEL--GV-------VAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHH--HH-------HHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHH--HH-------HHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 9998887764 56777777776554 2345556653 22 788999999999999998876 6677
Q ss_pred c--cccccc
Q 042210 220 M--SLISNS 226 (230)
Q Consensus 220 ~--~~~~n~ 226 (230)
+ ..+++.
T Consensus 513 ~~~~~~~~~ 521 (597)
T 2xpi_A 513 KPWAATWAN 521 (597)
T ss_dssp GGGHHHHHH
T ss_pred hhHHHHHHH
Confidence 7 445543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.65 E-value=7.5e-16 Score=135.18 Aligned_cols=201 Identities=9% Similarity=0.001 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|.++|+.+.+.+- .+..+ +.++.+|. +.|+.++|.++|+++. +.+..+|+.+...|.+.|++++|.++|++
T Consensus 322 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEIDP-YNLDVYPLHLASLH--ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCCTTHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 578999999988762 25566 99999999 9999999999999886 55688999999999999999999999999
Q ss_pred HHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChh
Q 042210 78 LLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDG 146 (230)
Q Consensus 78 M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~ 146 (230)
+.+. .| +..+|+.+..++.+.|++ |.++++.+. +..+|+.+...|.+.|++++|.++|+++.+ .+..
T Consensus 399 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 399 SSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 9773 34 566999999999999999 999998886 788999999999999999999999999875 5678
Q ss_pred hhHHHHHHhhh----cchhhhHHHHHHHhh---hcCc--hhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 147 LHELIRIKAVD----DDLHELFPEYLVQML---ALPD--TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 147 t~n~li~~~~~----~~~~~~~~~m~~~~~---~~p~--~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
+|+.+...+.. ++|.+.|+++.+... ..|+ ..++.. +.. +|.+.|++++|..++..+.+.+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~--l~~-------~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN--LGH-------AYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH--HHH-------HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH--HHH-------HHHHhcCHHHHHHHHHHHHHhC
Confidence 89999887764 578888888877631 3676 445555 333 8889999999999999888765
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=3.2e-09 Score=88.20 Aligned_cols=201 Identities=11% Similarity=0.030 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.++.+.+. .|+... ..+-..+. +.|++++|.+.|+++. .| +..+|+.+-..+.+.|++++|...|+
T Consensus 118 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 118 EGAVQAYVSALQY--NPDLYCVRSDLGNLLK--ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SHHHHHHHHHHHH--CTTCTHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566666666654 355444 44555566 6677777777776654 23 34566666666666777777776666
Q ss_pred HHHhCC--------------------------------CCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhH
Q 042210 77 DLLKSD--------------------------------VRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFV 116 (230)
Q Consensus 77 ~M~~~g--------------------------------~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~ 116 (230)
++.+.+ +.| +..++..+...+.+.|++ |...++.+. +..+
T Consensus 194 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 654421 123 234555566666666666 555555554 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhhcchhhhHHHHHHHhh-hcCc-hhhhhhhhhcccccC
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVDDDLHELFPEYLVQML-ALPD-TFMGEGLEVIPKSQA 191 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~~~~~~~~~~m~~~~~-~~p~-~~t~~~l~~~~~~~~ 191 (230)
|+.+...|.+.|++++|.+.|+++.+ ++..+|+.+...+...+..+...+.++... ..|+ ..++..+..
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~------ 347 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS------ 347 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH------
Confidence 66677777777777777777776653 345566666555554333332223222221 2243 223333211
Q ss_pred CcccccccCCccCCcccccccccc
Q 042210 192 PREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 192 ~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
.+.+.|++++|...+..+.+.
T Consensus 348 ---~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 348 ---VLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp ---HHHTTTCCHHHHHHHHHHHTT
T ss_pred ---HHHHcCCHHHHHHHHHHHHhh
Confidence 667788888888888777663
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=4.4e-09 Score=87.34 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...|+.+.+. .|+.. . ..+...+. +.|++++|.+.|+++. .|+ ...+..+-..+...|++++|...|+
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALV--AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5788899988775 47655 4 78889999 9999999999999876 555 4567777788888999999999999
Q ss_pred HHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh---------------------------------------hH
Q 042210 77 DLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM---------------------------------------RV 114 (230)
Q Consensus 77 ~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~---------------------------------------~~ 114 (230)
++.+. .| +..+|..+-..+.+.|++ |...++.+. +.
T Consensus 160 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 160 KAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 98774 34 456788888888888887 666665543 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcc
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIP 187 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~ 187 (230)
.++..+...|.+.|++++|.+.|+++.+ | +..+|+.+...+.. ++|.+.++++.+.. .++..++..+..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~-- 313 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLAN-- 313 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHH--
Confidence 6777888888888899999888888764 4 34567766655543 46677777666543 223444444222
Q ss_pred cccCCcccccccCCccCCcccccccccc
Q 042210 188 KSQAPREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 188 ~~~~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
.+.+.|++++|...+..+.+.
T Consensus 314 -------~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 314 -------IKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp -------HHHTTTCHHHHHHHHHHHTTS
T ss_pred -------HHHHcCCHHHHHHHHHHHHhc
Confidence 677889999999998887764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.05 E-value=2.4e-09 Score=90.34 Aligned_cols=205 Identities=11% Similarity=-0.053 Sum_probs=149.5
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|..+|+.+.+. .|+ ... ..+...|. +.|++++|...|+++. +.+...|..+...|.+.|++++|...|+
T Consensus 43 ~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 43 ADALSQFHAAVDG--DPDNYIAYYRRATVFL--AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5688888888766 343 444 77888888 9999999999999876 4457789999999999999999999999
Q ss_pred HHHhCCCCCCc----ccHHHHHHH------------hhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHH
Q 042210 77 DLLKSDVRRDN----YTFPFLFKG------------FTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMA 133 (230)
Q Consensus 77 ~M~~~g~~p~~----~t~~~ll~~------------~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A 133 (230)
++.+. .|+. ..+..+... +.+.|++ |...+..+. +...+..+...|.+.|++++|
T Consensus 119 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 119 KVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 98774 3433 455555433 7788888 888888876 788899999999999999999
Q ss_pred HHHHhhccC---CChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhh-hhhhcc---cccCCcccccccCCc
Q 042210 134 RGIFYMSCE---DDDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGE-GLEVIP---KSQAPREETPRVGNL 202 (230)
Q Consensus 134 ~~vf~~m~~---~~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~-~l~~~~---~~~~~~~a~~~~g~~ 202 (230)
.++|+++.+ .+..+|+.+...+.. ++|++.++++.+. .|+..... .+..+. ........+.+.|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (450)
T 2y4t_A 197 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273 (450)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999998865 467788888776654 4677777777643 45533321 110000 000001267788999
Q ss_pred cCCcccccccccc
Q 042210 203 EEGTPQEGRPHEH 215 (230)
Q Consensus 203 ~~a~~i~~~~~~~ 215 (230)
++|...+..+.+.
T Consensus 274 ~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 274 TDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9998888887764
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.03 E-value=3e-09 Score=89.72 Aligned_cols=197 Identities=11% Similarity=0.046 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-h---hhHHHHHHH------------
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-V---FLWNTMIKG------------ 61 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~---~~yn~li~~------------ 61 (230)
++|...++.+.+.+ |+. .. ..+...|. +.|++++|...|+++. .|+ . ..|..+...
T Consensus 77 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 77 KAALPDLTKVIQLK--MDFTAARLQRGHLLL--KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887764 443 34 77888888 9999999999999876 343 3 556655443
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHH
Q 042210 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 62 ~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~ 134 (230)
+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++ |...+..+. +..+|..+...|.+.|++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 788899999999999887642 23566788888899999988 888888776 6788888999999999999999
Q ss_pred HHHhhccC--CChh-hhHHH------------HHHhh----hcchhhhHHHHHHHhhhcCchh-----hhhhhhhccccc
Q 042210 135 GIFYMSCE--DDDG-LHELI------------RIKAV----DDDLHELFPEYLVQMLALPDTF-----MGEGLEVIPKSQ 190 (230)
Q Consensus 135 ~vf~~m~~--~~~~-t~n~l------------i~~~~----~~~~~~~~~~m~~~~~~~p~~~-----t~~~l~~~~~~~ 190 (230)
..|+++.+ |+.. .|..+ ...+. .++|.+.++++.+.. |+.. .+..+ .
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l--~---- 302 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERI--C---- 302 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHH--H----
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHH--H----
Confidence 99988764 5443 33332 22222 346666666665533 4311 22221 1
Q ss_pred CCcccccccCCccCCcccccccccc
Q 042210 191 APREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 191 ~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
..+.+.|++++|...+..+.+.
T Consensus 303 ---~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 303 ---HCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp ---HHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHCCCHHHHHHHHHHHHHh
Confidence 1555667777776666665543
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.98 E-value=2.4e-09 Score=86.43 Aligned_cols=181 Identities=13% Similarity=0.019 Sum_probs=140.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH-HHHHHHhhhcC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF-PFLFKGFTRDI 101 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~-~~ll~~~~~~~ 101 (230)
-.+...|. ..|+++.|...++....|+..++..+...+...++.++|.+.++++...+..|+...+ ..+-..+.+.|
T Consensus 38 ~~l~r~yi--~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 38 VFLYRAYL--AQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHH--HTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH--HCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 44668888 9999999999888766777888999999999999999999999999988877865544 44447888999
Q ss_pred ch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHH---HHHH----hhhcchhhhHHHHHHH
Q 042210 102 AG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHEL---IRIK----AVDDDLHELFPEYLVQ 170 (230)
Q Consensus 102 ~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~---li~~----~~~~~~~~~~~~m~~~ 170 (230)
++ |...++.-.+...+..+...|.+.|++++|.+.|+++.+ |+....+. .+.. ...++|.+.|+++.+.
T Consensus 116 ~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 116 NPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp CHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 99 888888733888999999999999999999999999875 66532221 1121 3356888999988876
Q ss_pred hhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 171 MLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 171 ~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
. ..+...+..+.. ++.+.|++++|+..+..+.+..
T Consensus 196 ~--p~~~~~~~~la~---------~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 196 C--SPTLLLLNGQAA---------CHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp S--CCCHHHHHHHHH---------HHHHTTCHHHHHHHHHHHHHHC
T ss_pred C--CCcHHHHHHHHH---------HHHHcCCHHHHHHHHHHHHHhC
Confidence 4 233444555333 6778999999999998877653
No 12
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.95 E-value=1.6e-10 Score=97.86 Aligned_cols=169 Identities=12% Similarity=-0.015 Sum_probs=68.1
Q ss_pred CCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 042210 19 KPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95 (230)
Q Consensus 19 ~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~ 95 (230)
|... ..++..+. +.|++++|...++... .++..+.+.++.+|.+.|++.++.++++ .|+..+|..+-.
T Consensus 60 D~~~y~~V~~~ae--~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd 130 (449)
T 1b89_A 60 DPSSYMEVVQAAN--TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 130 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred CHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence 3334 44555555 5555555555444333 2334455555555555555555555543 255556666666
Q ss_pred HhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhHHHHHHHhhh
Q 042210 96 GFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLVQMLA 173 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~~~m~~~~~~ 173 (230)
.|...|.+ |...|.. ...|..|.+.+.+.|++++|.+.+.++. ++.+|..++.+|...+-+++..........
T Consensus 131 ~~~~~g~yeeA~~~Y~~---a~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~ 205 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNN---VSNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVV 205 (449)
T ss_dssp ------CTTTHHHHHHH---TTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTT
T ss_pred HHHHcCCHHHHHHHHHH---hhhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 66666666 5555553 3578888888888888888888888873 778888888888877666666443332223
Q ss_pred cCchhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 174 LPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 174 ~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
.||... . ++. .|.+.|.++++..+++..
T Consensus 206 ~ad~l~--~--lv~-------~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 206 HADELE--E--LIN-------YYQDRGYFEELITMLEAA 233 (449)
T ss_dssp CHHHHH--H--HHH-------HHHHTTCHHHHHHHHHHH
T ss_pred CHhhHH--H--HHH-------HHHHCCCHHHHHHHHHHH
Confidence 343311 1 222 667778887776665543
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.93 E-value=1.1e-07 Score=76.51 Aligned_cols=148 Identities=6% Similarity=-0.035 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
++|.+.++.+...+..|+... ..+-..+. +.|++++|.+.++. ..+...+..+...|.+.|++++|...|+++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~--~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYF--YDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH--HTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467888888888887787665 44447788 99999999999998 5677889999999999999999999999998
Q ss_pred hCCCCCCcccHHHH----HHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-Ch
Q 042210 80 KSDVRRDNYTFPFL----FKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DD 145 (230)
Q Consensus 80 ~~g~~p~~~t~~~l----l~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~ 145 (230)
+.. |+.. ...+ +..+...|+. |..+++.+. +...|+.+-..|.+.|++++|...|++..+ | +.
T Consensus 158 ~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 764 6643 2233 3334444777 889998887 788999999999999999999999998764 4 55
Q ss_pred hhhHHHHHHhh
Q 042210 146 GLHELIRIKAV 156 (230)
Q Consensus 146 ~t~n~li~~~~ 156 (230)
.+|+.++..+.
T Consensus 235 ~~l~~l~~~~~ 245 (291)
T 3mkr_A 235 ETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777765554
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.90 E-value=1.8e-07 Score=72.56 Aligned_cols=166 Identities=10% Similarity=-0.083 Sum_probs=128.9
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.++...+.. |+ ... ..+...|. +.|++++|.+.|++.. +.+...|..+...|...|++++|...|+
T Consensus 54 ~~A~~~~~~al~~~--~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 54 EQAKVPLRKALEID--PSSADAHAALAVVFQ--TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp GGGHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CChHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 57888888887763 43 334 77778888 9999999999999865 4467788999999999999999999999
Q ss_pred HHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-Ch
Q 042210 77 DLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DD 145 (230)
Q Consensus 77 ~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~ 145 (230)
+....+..| +...+..+...+.+.|++ |...+.... +...+..+...|.+.|++++|...|++..+ | +.
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred HHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 987754555 455777888889999998 888888776 678899999999999999999999998865 3 44
Q ss_pred hhhHHHHHHhhh----cchhhhHHHHHHHh
Q 042210 146 GLHELIRIKAVD----DDLHELFPEYLVQM 171 (230)
Q Consensus 146 ~t~n~li~~~~~----~~~~~~~~~m~~~~ 171 (230)
..|..+...+.. +++.+.++++.+..
T Consensus 210 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 455555555543 45666666655443
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.89 E-value=1.2e-08 Score=83.95 Aligned_cols=198 Identities=11% Similarity=0.021 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|..+++.+.+.. |+ ..+ ..+-..|. +.|++++|...|++.. +.+...|..+...|.+.|++++|...|+
T Consensus 82 ~~A~~~~~~al~~~--p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 157 (365)
T 4eqf_A 82 PVTILFMEAAILQD--PGDAEAWQFLGITQA--ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157 (365)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHH
Confidence 56788888887764 44 344 77888888 9999999999999875 4457789999999999999999999999
Q ss_pred HHHhCCCC-C--------CcccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 77 DLLKSDVR-R--------DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 77 ~M~~~g~~-p--------~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
+..+..-. + ....+..+...+.+.|++ |...+.... +..+|..+...|.+.|++++|.+.|+
T Consensus 158 ~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp HHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 98663210 0 122334457788888888 888888877 47789999999999999999999999
Q ss_pred hccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCccccc
Q 042210 139 MSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEG 210 (230)
Q Consensus 139 ~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~ 210 (230)
+..+ | +..+|+.+...+.. ++|.+.+++..+. .|+ ..++..+.. .+.+.|++++|...+.
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~---------~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGI---------SCINLGAYREAVSNFL 305 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH---------HHHHHTCCHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHH---------HHHHCCCHHHHHHHHH
Confidence 8765 4 56778888776654 4666666665554 354 333444222 6788999999999988
Q ss_pred ccccc
Q 042210 211 RPHEH 215 (230)
Q Consensus 211 ~~~~~ 215 (230)
.+.+.
T Consensus 306 ~al~~ 310 (365)
T 4eqf_A 306 TALSL 310 (365)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87764
No 16
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.84 E-value=5.7e-07 Score=68.02 Aligned_cols=174 Identities=11% Similarity=-0.119 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhc-CChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRI-DSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~-~~~~~a~~~~ 75 (230)
++|.+.++...+.. |+ ... ..+...|. ..|+.++|.+.|++.. +.+...|..+...|... |++++|...|
T Consensus 25 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 25 RQATASIEDALKSD--PKNELAWLVRAEIYQ--YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100 (225)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ccchHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46777787777653 43 334 77778888 9999999999998875 44667888899999999 9999999999
Q ss_pred HHHHhCCCCCC-cccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C--
Q 042210 76 LDLLKSDVRRD-NYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-- 143 (230)
Q Consensus 76 ~~M~~~g~~p~-~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-- 143 (230)
++..+.+..|+ ...+..+...+...|++ |...+.... +...+..+...|.+.|++++|.+.|++..+ |
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (225)
T 2vq2_A 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180 (225)
T ss_dssp HHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99887444443 45777888889999998 888887776 678888999999999999999999998764 4
Q ss_pred ChhhhHHHHHHhhhcchhhhHHHHHHHhh-hcCchhh
Q 042210 144 DDGLHELIRIKAVDDDLHELFPEYLVQML-ALPDTFM 179 (230)
Q Consensus 144 ~~~t~n~li~~~~~~~~~~~~~~m~~~~~-~~p~~~t 179 (230)
+...|..+...+...+..+......+... ..|+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 44455555444444333333333333321 3455433
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.84 E-value=1.4e-07 Score=75.81 Aligned_cols=200 Identities=10% Similarity=0.060 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcC-ChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRID-SHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~-~~~~a~~~~ 75 (230)
++|.++++.+.+.. |+. .. ..+...+. +.|+.++|...++++. +.+...|..+-..+...| ++++|...|
T Consensus 39 ~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 114 (330)
T 3hym_B 39 KMCYKLTSVVMEKD--PFHASCLPVHIGTLV--ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114 (330)
T ss_dssp HHHHHHHHHHHHHC--TTCTTTHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCChhhHHHHHHHHH--HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56788888887664 333 33 56777888 9999999999998875 445678888888999999 999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-Ch
Q 042210 76 LDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DD 145 (230)
Q Consensus 76 ~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~ 145 (230)
++..+.. +.+...|..+-..+...|++ |...+.... +...+..+...|.+.|++++|.+.|++..+ | +.
T Consensus 115 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 115 SKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 9987653 22456788889999999998 888888776 467777889999999999999999998875 3 45
Q ss_pred hhhHHHHHHhhh----cchhhhHHHHHHHhhhc------Cc-hhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 146 GLHELIRIKAVD----DDLHELFPEYLVQMLAL------PD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 146 ~t~n~li~~~~~----~~~~~~~~~m~~~~~~~------p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
..|+.+...+.. ++|.+.+++..+...-. |+ ..++..+.. .+.+.|++++|...+..+.+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~---------~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH---------VCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH---------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH---------HHHHhcCHHHHHHHHHHHHh
Confidence 566666555543 46777777766653111 21 223333212 56678888888888877766
Q ss_pred c
Q 042210 215 H 215 (230)
Q Consensus 215 ~ 215 (230)
.
T Consensus 265 ~ 265 (330)
T 3hym_B 265 L 265 (330)
T ss_dssp H
T ss_pred h
Confidence 4
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.83 E-value=1.5e-07 Score=76.93 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=139.6
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...++.+.+. .|+.. . ..+-..+. +.|++++|...|++.. +.+...|..+...|...|++++|...|+
T Consensus 81 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 81 PNAVLLFEAAVQQ--DPKHMEAWQYLGTTQA--ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHS--CTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777777665 34433 3 66777777 8888888888888765 4466778888888888888888888888
Q ss_pred HHHhCC-----------------------------------------------CCC---CcccHHHHHHHhhhcCch--h
Q 042210 77 DLLKSD-----------------------------------------------VRR---DNYTFPFLFKGFTRDIAG--S 104 (230)
Q Consensus 77 ~M~~~g-----------------------------------------------~~p---~~~t~~~ll~~~~~~~~~--a 104 (230)
+..... ..| +..++..+-..+.+.|++ |
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 765532 112 355677788888888888 8
Q ss_pred hHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhh----hcchhhhHHHHHHHhh
Q 042210 105 LEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAV----DDDLHELFPEYLVQML 172 (230)
Q Consensus 105 ~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~----~~~~~~~~~~m~~~~~ 172 (230)
...+.... +...|..+...|.+.|++++|.+.|++..+ | +..+|..+...+. .++|.+.+++..+...
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88887776 677889999999999999999999998764 4 4556666655554 3577777777766542
Q ss_pred hc--Cc-------hhhhhhhhhcccccCCcccccccCCccCCcccccccc
Q 042210 173 AL--PD-------TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPH 213 (230)
Q Consensus 173 ~~--p~-------~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~ 213 (230)
-. |+ ..++..+.. ++.+.|+.++|..++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~---------~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRL---------ALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp TC------CCCCCHHHHHHHHH---------HHHHHTCGGGHHHHHTTCH
T ss_pred CCCCccccccchhhHHHHHHHH---------HHHHhCChHhHHHhHHHHH
Confidence 11 00 233444222 7788899999988776443
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.80 E-value=2.2e-07 Score=74.49 Aligned_cols=199 Identities=6% Similarity=-0.103 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|..+++.+.+.. |+. .. ..+...+. +.|++++|...|++.. +.+...|..+...|...|++++|...|+
T Consensus 38 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 113 (327)
T 3cv0_A 38 AEAALAFEAVCQAA--PEREEAWRSLGLTQA--ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 113 (327)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45777777776653 433 33 56667777 8888888888888765 4456677777778888888888888877
Q ss_pred HHHhCCC------------------------------------------------CCCcccHHHHHHHhhhcCch--hhH
Q 042210 77 DLLKSDV------------------------------------------------RRDNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 77 ~M~~~g~------------------------------------------------~p~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
+..+..- +.+...+..+...+.+.|++ |..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 7654310 11334455555666666666 666
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhc
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLAL 174 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~ 174 (230)
.+.... +...|..+...|.+.|++++|.+.|++..+ | +..+|..+...+.. ++|.+.+++..+.. ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~ 272 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VG 272 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cc
Confidence 666554 566777778888888888888888877654 3 34556665555443 46667776666544 22
Q ss_pred C-----------chhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 175 P-----------DTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 175 p-----------~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
+ +...+..+.. ++.+.|+.++|..++....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~---------~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRM---------LLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHH---------HHHHTTCHHHHHHHTTCCSH
T ss_pred cccccccchhhcCHHHHHHHHH---------HHHhcCCHHHHHHHHHHHHH
Confidence 1 1223333212 67788999999888876554
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.78 E-value=2.7e-08 Score=84.28 Aligned_cols=152 Identities=11% Similarity=-0.056 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
++|++.++..++. .+++.+ +.++.+|. +.|+++++.++++ .|+..+|+.+-..|...|.+++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~--Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALA--KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -----------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHH--HhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 5667766655553 455778 99999999 9999999988875 477778888888888888888888888876
Q ss_pred CCCCCCcccHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC-CChhhhHHHHHHhhh
Q 042210 81 SDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE-DDDGLHELIRIKAVD 157 (230)
Q Consensus 81 ~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-~~~~t~n~li~~~~~ 157 (230)
..|..+..++.+.|++ |.+.+....++.+|..++.+|...|+++.|......+.. |+. .-.++..|..
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek 219 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQD 219 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHH
Confidence 4688888888888888 777777777888888888888888888887666555442 322 1235555554
Q ss_pred cchhhhHHHHHHHh
Q 042210 158 DDLHELFPEYLVQM 171 (230)
Q Consensus 158 ~~~~~~~~~m~~~~ 171 (230)
.+-.+..-.+++.+
T Consensus 220 ~G~~eEai~lLe~a 233 (449)
T 1b89_A 220 RGYFEELITMLEAA 233 (449)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44333333333333
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.77 E-value=3.7e-07 Score=73.23 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccC-ChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKG-DLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~-~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
++|..+++.+.+. .|+ ... ..+-..+. ..| +.++|...|++.. +.+...|..+-..+...|++++|...|
T Consensus 73 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 73 NELFYLSHKLVDL--YPSNPVSWFAVGCYYL--MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHHHHHHHH--CTTSTHHHHHHHHHHH--HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCCHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4677777777765 343 444 77778888 999 9999999999865 445678999999999999999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC------
Q 042210 76 LDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE------ 142 (230)
Q Consensus 76 ~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~------ 142 (230)
++..+.. +.+...+..+-..+...|++ |...+.... +...+..+...|.+.|++++|...|++..+
T Consensus 149 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 9987643 22455677788899999999 888888876 788899999999999999999999987753
Q ss_pred -----C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCcccccc
Q 042210 143 -----D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGR 211 (230)
Q Consensus 143 -----~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~ 211 (230)
| +..+|..+...+.. ++|.+.+++..+.. |+ ...+..+.. .+.+.|+.++|...+..
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~la~---------~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---PQNASTYSAIGY---------IHSLMGNFENAVDYFHT 295 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHH---------HHHHHTCHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC---ccchHHHHHHHH---------HHHHhccHHHHHHHHHH
Confidence 2 23466666655543 46777777666544 33 233333222 67788999999999888
Q ss_pred ccccC
Q 042210 212 PHEHS 216 (230)
Q Consensus 212 ~~~~~ 216 (230)
+.+..
T Consensus 296 al~~~ 300 (330)
T 3hym_B 296 ALGLR 300 (330)
T ss_dssp TTTTC
T ss_pred HHccC
Confidence 77653
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.72 E-value=6.3e-07 Score=68.77 Aligned_cols=165 Identities=10% Similarity=-0.002 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...++...+ ..|+.. . ..+...+. +.|++++|.+.|++.. +.+...|..+...|...|++++|...|+
T Consensus 40 ~~A~~~~~~~l~--~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (243)
T 2q7f_A 40 EKAAEAFTKAIE--ENKEDAIPYINFANLLS--SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115 (243)
T ss_dssp --CCTTHHHHHT--TCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345566666655 334433 3 66777888 9999999999999865 4467788889999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-Chh
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDG 146 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~ 146 (230)
+..+.. +.+...+..+...+.+.|++ |...+.... +...+..+...|.+.|++++|.+.|++..+ | +..
T Consensus 116 ~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (243)
T 2q7f_A 116 KALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194 (243)
T ss_dssp HHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 987643 23556788888899999999 888888776 678888999999999999999999998764 3 455
Q ss_pred hhHHHHHHhhh----cchhhhHHHHHHHh
Q 042210 147 LHELIRIKAVD----DDLHELFPEYLVQM 171 (230)
Q Consensus 147 t~n~li~~~~~----~~~~~~~~~m~~~~ 171 (230)
+|..+...+.. ++|.+.+++..+..
T Consensus 195 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 195 AFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 66666555543 46777777665543
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.9e-07 Score=77.77 Aligned_cols=198 Identities=9% Similarity=-0.086 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|...|+.+.+.. |+... ..+..+|. +.|++++|...|+++. +.+...|..+..+|.+.|++++|...|++
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYV--SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHH--HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57889999998886 78777 88899999 9999999999999875 44567899999999999999999999999
Q ss_pred HHhCCCCCCccc--------------------------------------------------------------------
Q 042210 78 LLKSDVRRDNYT-------------------------------------------------------------------- 89 (230)
Q Consensus 78 M~~~g~~p~~~t-------------------------------------------------------------------- 89 (230)
+...+- ++...
T Consensus 99 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 99 LSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 876541 11111
Q ss_pred -----------HHHHHHHhh---hcCch--hhHHHhhhh-------------------hHhHHHHHHHHHHhcCCHHHHH
Q 042210 90 -----------FPFLFKGFT---RDIAG--SLEKSCIVM-------------------RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 90 -----------~~~ll~~~~---~~~~~--a~~~~~~~~-------------------~~~~~~~li~~y~~~g~~~~A~ 134 (230)
+...-..+. +.|++ |...+..+. +...+..+...|.+.|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 111111111 25666 655555433 3567778888899999999999
Q ss_pred HHHhhccC--CChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccc
Q 042210 135 GIFYMSCE--DDDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQ 208 (230)
Q Consensus 135 ~vf~~m~~--~~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i 208 (230)
..|++..+ |+..+|..+...+.. +++.+.+++....... +...+..+.. .+...|++++|...
T Consensus 258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~---------~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--NSSVYYHRGQ---------MNFILQNYDQAGKD 326 (514)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT--CTHHHHHHHH---------HHHHTTCTTHHHHH
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC--CHHHHHHHHH---------HHHHhCCHHHHHHH
Confidence 99998764 555555555554443 4677777766554311 1222222111 45566777777766
Q ss_pred ccccccc
Q 042210 209 EGRPHEH 215 (230)
Q Consensus 209 ~~~~~~~ 215 (230)
+..+.+.
T Consensus 327 ~~~~~~~ 333 (514)
T 2gw1_A 327 FDKAKEL 333 (514)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6665543
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.65 E-value=1.4e-06 Score=66.67 Aligned_cols=181 Identities=12% Similarity=0.001 Sum_probs=122.5
Q ss_pred CCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHH
Q 042210 18 TKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPF 92 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ 92 (230)
++... ..+-..+. +.|++++|...|++.. +.+...|..+-..+.+.|++++|...|++..+. .| +...+..
T Consensus 3 ~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLY--ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 44555 66667788 9999999999999864 445678888889999999999999999997664 34 4457778
Q ss_pred HHHHhhhc-----------Cch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHH
Q 042210 93 LFKGFTRD-----------IAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIR 152 (230)
Q Consensus 93 ll~~~~~~-----------~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li 152 (230)
+-..+.+. |++ |...++... +...|..+-..|...|++++|...|++..+ .+...|..+-
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 88888888 888 888887776 678888899999999999999999997654 4555666554
Q ss_pred HHhh----hcchhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 153 IKAV----DDDLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 153 ~~~~----~~~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
..+. .++|.+.+++..+.. |+ ...+..+.. .+.+.|+.++|...+.....
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~---------~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYAS---------ALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHH---------HHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHH---------HHHHccCHHHHHHHHHHHhh
Confidence 4443 457777777766544 44 223333222 67789999999988876553
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2.5e-07 Score=78.93 Aligned_cols=198 Identities=9% Similarity=-0.064 Sum_probs=149.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|...++...+.. |+... ..+...+. +.|++++|...++... +.+...|..+...|...|++++|...|++
T Consensus 254 ~~A~~~~~~~l~~~--~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 254 LGAHEDIKKAIELF--PRVNSYIYMALIMA--DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHH--TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHH--HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46778888887765 44444 77888888 9999999999999865 44677899999999999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC----
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD---- 144 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~---- 144 (230)
..+..- .+...+..+...+.+.|++ |...+.... +...+..+...|.+.|++++|.+.|++..+ |+
T Consensus 330 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 330 AKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 877532 2556788889999999999 888888776 678899999999999999999999998764 22
Q ss_pred ---hhhhHHHHHHhhh---c----chhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCcccccccc
Q 042210 145 ---DGLHELIRIKAVD---D----DLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPH 213 (230)
Q Consensus 145 ---~~t~n~li~~~~~---~----~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~ 213 (230)
..+|..+...+.. . +|.+.+++.... .|+ ..++..+.. .+.+.|+.++|...+..+.
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~---------~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQ---------MKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHH---------HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH---------HHHHhcCHHHHHHHHHHHH
Confidence 2267766655554 3 555666655543 343 223333212 6778899999999988877
Q ss_pred ccC
Q 042210 214 EHS 216 (230)
Q Consensus 214 ~~~ 216 (230)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 654
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.63 E-value=4.8e-07 Score=70.09 Aligned_cols=179 Identities=10% Similarity=-0.097 Sum_probs=134.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. ..|++++|.+.|++.. +.+...|..+...|.+.|++++|...|++..+.. +.+...+..+...+..
T Consensus 41 ~~~a~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 41 IQLGLGYL--QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHH--HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 44556677 9999999999999875 4467788999999999999999999999987653 2256678888899999
Q ss_pred cCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhh
Q 042210 100 DIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHEL 163 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~ 163 (230)
.|++ |...+.... +...+..+...|.+.|++++|.+.|++..+ | +...|..+...+.. ++|.+.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999 777777664 677888899999999999999999998765 4 45667666665554 456666
Q ss_pred HHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 164 FPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 164 ~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
+++..+. .|+ ...+.. ... .+.+.|+.++|.+.+..+.+..
T Consensus 198 ~~~~~~~---~~~~~~~~~~--~~~-------~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 198 YDLFAQG---GGQNARSLLL--GIR-------LAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTT---SCCCHHHHHH--HHH-------HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CcCcHHHHHH--HHH-------HHHHccCHHHHHHHHHHHHHHC
Confidence 6665443 233 222223 111 5678899999999988887653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.62 E-value=8.4e-08 Score=78.79 Aligned_cols=166 Identities=11% Similarity=-0.020 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-----------hhhHHHHHHHHHhcC
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-----------VFLWNTMIKGYSRID 66 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-----------~~~yn~li~~~~~~~ 66 (230)
++|...++...+.. |+ ... ..+...|. +.|++++|...|+++. .|+ ...++.+...+.+.|
T Consensus 116 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 116 QAAIVALQRCLELQ--PNNLKALMALAVSYT--NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHH--ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence 56788888887763 54 344 78888999 9999999999999875 222 223344578889999
Q ss_pred ChhHHHHHHHHHHhCC-CCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 67 SHKNGVLMYLDLLKSD-VRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~g-~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
++++|...|++..+.. -.++..++..+-..+.+.|++ |...+.... +..+|+.+...|.+.|++++|...|+
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999987753 223577899999999999999 888888876 78899999999999999999999999
Q ss_pred hccC--CC-hhhhHHHHHHhh----hcchhhhHHHHHHHh
Q 042210 139 MSCE--DD-DGLHELIRIKAV----DDDLHELFPEYLVQM 171 (230)
Q Consensus 139 ~m~~--~~-~~t~n~li~~~~----~~~~~~~~~~m~~~~ 171 (230)
+..+ |+ ..+|..+...+. .++|.+.+++..+..
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8765 54 566777655554 357788888777654
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.1e-06 Score=67.93 Aligned_cols=166 Identities=8% Similarity=-0.026 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--C----CC----hhhHHHHHHHHHhcCChhH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--Q----PS----VFLWNTMIKGYSRIDSHKN 70 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~----~~----~~~yn~li~~~~~~~~~~~ 70 (230)
++|...++...+.. .+... ..+-..+. ..|++++|...|+... . ++ ...|..+-..|.+.|++++
T Consensus 22 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (258)
T 3uq3_A 22 DEAIEHYNKAWELH--KDITYLNNRAAAEY--EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97 (258)
T ss_dssp HHHHHHHHHHHHHS--CCTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhh--ccHHHHHHHHHHHH--HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHH
Confidence 57889999998888 77777 88889999 9999999999999865 1 22 4788899999999999999
Q ss_pred HHHHHHHHHhCC------------------------CCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHH
Q 042210 71 GVLMYLDLLKSD------------------------VRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQN 118 (230)
Q Consensus 71 a~~~~~~M~~~g------------------------~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~ 118 (230)
|...|++..+.. ..| +...+..+-..+...|++ |...+.... +...|.
T Consensus 98 A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 177 (258)
T 3uq3_A 98 TIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177 (258)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999987632 223 334566677777788887 777777765 677788
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHHHHHHhhh----cchhhhHHHHHHHh
Q 042210 119 ALISTYCLCGEVDMARGIFYMSCE--DD-DGLHELIRIKAVD----DDLHELFPEYLVQM 171 (230)
Q Consensus 119 ~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~li~~~~~----~~~~~~~~~m~~~~ 171 (230)
.+...|.+.|++++|.+.|++..+ |+ ..+|..+-..+.. ++|.+.+++..+..
T Consensus 178 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888888888888888888887754 43 4555555444432 45666666555443
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.61 E-value=5.6e-07 Score=68.07 Aligned_cols=180 Identities=8% Similarity=-0.061 Sum_probs=135.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+. ..|++++|.+.|++.. +.+...|..+...|...|++++|...|++..+.. +.+..++..+...+..
T Consensus 12 ~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 12 TQLAMEYM--RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 55667788 9999999999999865 4557789999999999999999999999987643 2256678888999999
Q ss_pred c-Cch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhh----hcchhh
Q 042210 100 D-IAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAV----DDDLHE 162 (230)
Q Consensus 100 ~-~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~----~~~~~~ 162 (230)
. |++ |...+.... +...+..+...|.+.|++++|...|++..+ | +...|..+...+. .++|.+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 9 998 777777765 478889999999999999999999998765 4 3556666655544 357777
Q ss_pred hHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccccccc
Q 042210 163 LFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 163 ~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~ 215 (230)
.+++..+.. ...+...+..+.. .+...|+.+++..++..+.+.
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 169 YFKKYQSRV-EVLQADDLLLGWK---------IAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH-CSCCHHHHHHHHH---------HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCHHHHHHHHH---------HHHhcCcHHHHHHHHHHHHHh
Confidence 777776654 1122333333111 556788899888888777654
No 30
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.60 E-value=1.1e-06 Score=60.42 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=82.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+. ..|++++|..+|+++. +.+...|..+...+...|++++|...|++....+ +.+...+..+...+.+
T Consensus 5 ~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYY--KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 34556667 8888888888888764 4456677778888888888888888888876643 2234456666777777
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.|++ |...+..+. +...+..+...|.+.|++++|.+.|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 7777 666666655 56667777777777788877777777654
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.59 E-value=1.5e-07 Score=72.37 Aligned_cols=179 Identities=12% Similarity=-0.005 Sum_probs=126.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. +.|++++|...|++.. +.+...|..+...|.+.|++++|...|++..+.. +.+...+..+...+..
T Consensus 27 ~~~a~~~~--~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 27 GQQMGRGS--EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 44455666 8999999999999875 4467788889999999999999999999987653 2256678888899999
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhh----hcchhhhHH
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAV----DDDLHELFP 165 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~----~~~~~~~~~ 165 (230)
.|++ |...+.... +...+..+...|.+.|++++|...|++..+ | +...|..+...+. .++|.+.++
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999 888888776 778899999999999999999999998764 3 4556666555444 356777777
Q ss_pred HHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 166 EYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 166 ~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
+..+.. |+ ..++..+.. .+.+.|+.++|...+..+.+..
T Consensus 184 ~~~~~~---~~~~~~~~~la~---------~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 184 AVTEQD---PGHADAFYNAGV---------TYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHC---TTCHHHHHHHHH---------HHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---cccHHHHHHHHH---------HHHHccCHHHHHHHHHHHHccC
Confidence 766554 33 333333212 6778999999999998887753
No 32
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.53 E-value=5e-07 Score=77.66 Aligned_cols=198 Identities=12% Similarity=0.014 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|...++...+. .|+... ..+-..+. +.|++++|...|++.. +.+...|..+-..+...|++++|...|++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLA--DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTC--CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHH--HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4677778777776 466455 77778888 9999999999999875 45577899999999999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhh
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGL 147 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t 147 (230)
..+.. +-+...|..+-..+...|++ |...+.... +...+..+-..|.+.|++++|.+.|++..+ |+ ...
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 87643 22456788899999999999 888888876 677899999999999999999999998764 21 111
Q ss_pred hH----------HHHHH----------hhhcchhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCc
Q 042210 148 HE----------LIRIK----------AVDDDLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGT 206 (230)
Q Consensus 148 ~n----------~li~~----------~~~~~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~ 206 (230)
|. ++... ...++|.+.+++..+.. |+ ...+..+.. .+.+.|+.++|.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~~---------~~~~~g~~~~A~ 482 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD---PRSEQAKIGLAQ---------LKLQMEKIDEAI 482 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH---------HHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC---CCCHHHHHHHHH---------HHHHhccHHHHH
Confidence 11 11222 44457777777766654 43 233333222 677899999999
Q ss_pred cccccccccC
Q 042210 207 PQEGRPHEHS 216 (230)
Q Consensus 207 ~i~~~~~~~~ 216 (230)
..+..+.+..
T Consensus 483 ~~~~~al~~~ 492 (537)
T 3fp2_A 483 ELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9888877654
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.53 E-value=1.1e-06 Score=68.78 Aligned_cols=202 Identities=9% Similarity=-0.068 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHhcCCCC---CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK---PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLM 74 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~---~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~ 74 (230)
++|.+.++.+.+.....+ ..+ ..+-..+. ..|++++|...|++.. +.+...|..+-..|.+.|++++|...
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYD--SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHH--HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 567888888877643222 233 56667777 9999999999999875 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CCh
Q 042210 75 YLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE---DDD 145 (230)
Q Consensus 75 ~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~ 145 (230)
|++..+.. +.+...+..+-..+.+.|++ |...++... +.......+..+.+.|++++|...|++... ++.
T Consensus 100 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 100 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch
Confidence 99987642 22566888899999999999 888888877 222344455556777999999999976653 444
Q ss_pred hhhHHHHHHhhh----cchhhhHHHHHHHhh-hcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 146 GLHELIRIKAVD----DDLHELFPEYLVQML-ALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 146 ~t~n~li~~~~~----~~~~~~~~~m~~~~~-~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
..|+ +...+.. +++++.+.+...... ..|+ ...+..+.. .+.+.|+.++|...+..+.+..
T Consensus 179 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~---------~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 179 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK---------YYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---------HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH---------HHHHcCCHHHHHHHHHHHHhCC
Confidence 4444 3332222 345555555443321 1111 223333212 6778899999999998887754
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.51 E-value=7.4e-06 Score=59.63 Aligned_cols=146 Identities=11% Similarity=0.001 Sum_probs=114.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. ..|++++|...|++.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 12 ~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHA--KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHH--HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34556677 8999999999999976 3466788889999999999999999999987652 2355678888888999
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHH
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFP 165 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~ 165 (230)
.|++ |...+.... +...+..+...|.+.|++++|.+.|++..+ | +...|..+...+.. ++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999 888888776 678888899999999999999999998765 3 44566666555543 46666666
Q ss_pred HHHHHh
Q 042210 166 EYLVQM 171 (230)
Q Consensus 166 ~m~~~~ 171 (230)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 665543
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.50 E-value=9.1e-06 Score=63.44 Aligned_cols=178 Identities=11% Similarity=0.037 Sum_probs=127.8
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHhh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY--TFPFLFKGFT 98 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~--t~~~ll~~~~ 98 (230)
..-..+. +.|++++|...|++.. +.+...|..+-..|.+.|++++|...|++..+.+-.|+.. .|..+-..+.
T Consensus 8 ~~a~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLF--KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHH--TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHH--HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3445666 9999999999999875 3445588888899999999999999999988744222221 2788888999
Q ss_pred hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHH-HHhh---hcchhhhH
Q 042210 99 RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIR-IKAV---DDDLHELF 164 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li-~~~~---~~~~~~~~ 164 (230)
+.|++ |...+.... +...|..+-..|.+.|++++|...|++..+ | +...|..+- ..+. .++|.+.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 888888776 678899999999999999999999998876 4 344555554 4443 35677777
Q ss_pred HHHHHHhhhcCch-hhhhhhhhcccccCCcccccccCC---ccCCcccccccccc
Q 042210 165 PEYLVQMLALPDT-FMGEGLEVIPKSQAPREETPRVGN---LEEGTPQEGRPHEH 215 (230)
Q Consensus 165 ~~m~~~~~~~p~~-~t~~~l~~~~~~~~~~~a~~~~g~---~~~a~~i~~~~~~~ 215 (230)
++..+.. |+. ..+..+.. .+...|+ .++|...+..+.+.
T Consensus 166 ~~a~~~~---p~~~~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 166 VKVLELK---PNIYIGYLWRAR---------ANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHS---TTCHHHHHHHHH---------HHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHhC---ccchHHHHHHHH---------HHHHcCcchhhHHHHHHHHHHHHH
Confidence 7666543 442 22222111 3444565 77787777666554
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.50 E-value=1.1e-06 Score=71.18 Aligned_cols=81 Identities=6% Similarity=-0.059 Sum_probs=38.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHH
Q 042210 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDM 132 (230)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~ 132 (230)
..+...|++++|...|++..+.. +.+...+..+-..+...|++ |...+.... +...+..+...|.+.|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444444444444444443321 11233444444555555555 444444443 44455555555555555555
Q ss_pred HHHHHhhcc
Q 042210 133 ARGIFYMSC 141 (230)
Q Consensus 133 A~~vf~~m~ 141 (230)
|...|++..
T Consensus 207 A~~~~~~a~ 215 (359)
T 3ieg_A 207 SLSEVRECL 215 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 37
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.48 E-value=2.2e-06 Score=69.93 Aligned_cols=161 Identities=9% Similarity=-0.014 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HH---------------HHHHHhhhccCChHHHHHHHHhcC--CC---ChhhHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PK---------------QTRYLLLYEKGDLKYECKVFRKIT--QP---SVFLWNTMI 59 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~---------------ll~~~~~~~~~~~~~a~~~~~~m~--~~---~~~~yn~li 59 (230)
++|...++.+.+.. |+... .. .+..+. +.|++++|...|+++. .| +..+|..+-
T Consensus 149 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 149 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH--HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 45667777776654 33222 21 366666 8899999999999876 34 477899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHH
Q 042210 60 KGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDM 132 (230)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~ 132 (230)
..|.+.|++++|...|++..... +.+...|..+...+.+.|++ |...+.... +...+..+...|.+.|++++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999977642 22456888999999999999 888888876 67889999999999999999
Q ss_pred HHHHHhhccC--CC------------hhhhHHHHHHhhhcchhhhHHHH
Q 042210 133 ARGIFYMSCE--DD------------DGLHELIRIKAVDDDLHELFPEY 167 (230)
Q Consensus 133 A~~vf~~m~~--~~------------~~t~n~li~~~~~~~~~~~~~~m 167 (230)
|...|++..+ |+ ..+|..+...+...+..+.....
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9999998765 32 46788877766654444444433
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.46 E-value=3.1e-06 Score=68.36 Aligned_cols=206 Identities=10% Similarity=-0.060 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...++...+. .|+. .. ..+-..+. +.|++++|...|++.. +.+...|..+-..|.+.|++++|...|+
T Consensus 20 ~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 20 ADALSQFHAAVDG--DPDNYIAYYRRATVFL--AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 5678888888775 3443 34 77778888 9999999999999875 3466789999999999999999999999
Q ss_pred HHHhCCCCC----CcccHHHH------------HHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHH
Q 042210 77 DLLKSDVRR----DNYTFPFL------------FKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMA 133 (230)
Q Consensus 77 ~M~~~g~~p----~~~t~~~l------------l~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A 133 (230)
+..+. .| +...+..+ ...+...|++ |...+.... +...+..+...|.+.|++++|
T Consensus 96 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 96 KVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 98764 34 22333333 4678888888 888888876 788899999999999999999
Q ss_pred HHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhh-hhhhhhcc---cccCCcccccccCCc
Q 042210 134 RGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFM-GEGLEVIP---KSQAPREETPRVGNL 202 (230)
Q Consensus 134 ~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t-~~~l~~~~---~~~~~~~a~~~~g~~ 202 (230)
...|++..+ | +..+|..+...+.. +++.+.+++..+.. |+... +..+..+. ........+.+.|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 250 (359)
T 3ieg_A 174 ISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250 (359)
T ss_dssp HHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999998875 3 45566666555443 46777777666543 43221 11100000 000001146678999
Q ss_pred cCCccccccccccC
Q 042210 203 EEGTPQEGRPHEHS 216 (230)
Q Consensus 203 ~~a~~i~~~~~~~~ 216 (230)
++|...+..+.+..
T Consensus 251 ~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 251 TDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99998888777654
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.44 E-value=1e-05 Score=63.15 Aligned_cols=200 Identities=7% Similarity=-0.123 Sum_probs=144.8
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcCC--CChh----hHHHHHHHHHhcCChhHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKITQ--PSVF----LWNTMIKGYSRIDSHKNGVL 73 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~~--~~~~----~yn~li~~~~~~~~~~~a~~ 73 (230)
++|...++...+.. |+.. . ..+-..|. +.|++++|.+.|++... ++.. .|..+-..|...|++++|..
T Consensus 20 ~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 20 AEAIEVFNKLEAKK--YNSPYIYNRRAVCYY--ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp HHHHHHHHHHHHTT--CCCSTTHHHHHHHHH--HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 56788888877653 4433 5 77778888 99999999999998652 2322 38888899999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHH-HHHHhcCCHHHHHHHHhhccC--C
Q 042210 74 MYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALI-STYCLCGEVDMARGIFYMSCE--D 143 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li-~~y~~~g~~~~A~~vf~~m~~--~ 143 (230)
.|++..+.. +-+...|..+-..+...|++ |...+.... +...|..+- ..|. .+++++|.+.|++..+ |
T Consensus 96 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 96 QYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 999977642 12446888999999999999 888888887 677777777 5555 4599999999998875 5
Q ss_pred C-hhhhHHHHHHhh-------hcchhhhHHHHHHHhhhcCch------hhhhhhhhcccccCCcccccccCCccCCcccc
Q 042210 144 D-DGLHELIRIKAV-------DDDLHELFPEYLVQMLALPDT------FMGEGLEVIPKSQAPREETPRVGNLEEGTPQE 209 (230)
Q Consensus 144 ~-~~t~n~li~~~~-------~~~~~~~~~~m~~~~~~~p~~------~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~ 209 (230)
+ ...|..+...+. .++|.+.+++..+.....|+. ..+..+.. .+.+.|+.++|...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY---------YYTINRDKVKADAAW 244 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH---------HHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---------HHHHcCCHHHHHHHH
Confidence 4 344444433332 345788888877765444552 12222212 567889999999999
Q ss_pred ccccccC
Q 042210 210 GRPHEHS 216 (230)
Q Consensus 210 ~~~~~~~ 216 (230)
..+.+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 8877653
No 40
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=1.6e-05 Score=63.94 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-hh-hHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-VF-LWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~~-~yn~li~~~~~~~~~~~a~~~~ 75 (230)
++|+.+++...+. +.|+.. . ..+...+. +.|++++|..+|++.. .|+ .. .|..+...+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEE--SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4566777665552 356555 4 78888888 9999999999999875 443 33 7999999999999999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHHhh-hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----
Q 042210 76 LDLLKSDVRRDNYTFPFLFKGFT-RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE----- 142 (230)
Q Consensus 76 ~~M~~~g~~p~~~t~~~ll~~~~-~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~----- 142 (230)
++..+.+ +++...|........ ..|+. |..+|+... +...|..++..+.+.|++++|+.+|++...
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 9987643 223334433322222 25777 888888876 788999999999999999999999998765
Q ss_pred C--ChhhhHHHHHHhhh----cchhhhHHHHHHH
Q 042210 143 D--DDGLHELIRIKAVD----DDLHELFPEYLVQ 170 (230)
Q Consensus 143 ~--~~~t~n~li~~~~~----~~~~~~~~~m~~~ 170 (230)
| ....|..++.-... +++..++++..+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 23467776654443 3455555554433
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.42 E-value=4.4e-06 Score=66.75 Aligned_cols=136 Identities=9% Similarity=0.013 Sum_probs=108.4
Q ss_pred HhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--
Q 042210 29 LLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-- 103 (230)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-- 103 (230)
+. ..|++++|...+++.. +.+...|..+...|.+.|++++|...|++..+.. +.+..+|..+...+.+.|++
T Consensus 148 ~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 148 FA--APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TT--SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HH--HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 66 8899999999999875 4567889999999999999999999999987643 22456788899999999999
Q ss_pred hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-------------hhhhHHHHHHhhhcchhhh
Q 042210 104 SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-------------DGLHELIRIKAVDDDLHEL 163 (230)
Q Consensus 104 a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-------------~~t~n~li~~~~~~~~~~~ 163 (230)
|...+.... +...|..+...|.+.|++++|.+.|++..+ |+ ..+|..+...+...+..+.
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 888888776 678899999999999999999999998764 44 4567666666655443333
Q ss_pred HHHH
Q 042210 164 FPEY 167 (230)
Q Consensus 164 ~~~m 167 (230)
..+.
T Consensus 305 A~~~ 308 (327)
T 3cv0_A 305 VELT 308 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.40 E-value=7.9e-06 Score=63.72 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...++...+.. |+ ... ..+-..|. +.|++++|...|++.. +.+...|..+-..|.+.|++++|...|+
T Consensus 60 ~~A~~~~~~al~~~--~~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 60 ALARNDFSQALAIR--PDMPEVFNYLGIYLT--QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCcHHHHHHHHHHHH--HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46778888877763 44 445 77888888 9999999999999876 4467889999999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCC-----
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD----- 144 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~----- 144 (230)
+..+. .|+.......+..+...|+. |...+.... +...+. +...+...++.++|.+.+++..+.+
T Consensus 136 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 136 AFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 98763 46665566666666777777 777776555 334443 7777888888999999999877622
Q ss_pred --hhhhHHHHHHhhhc----chhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccc
Q 042210 145 --DGLHELIRIKAVDD----DLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQE 209 (230)
Q Consensus 145 --~~t~n~li~~~~~~----~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~ 209 (230)
..+|..+...+... +|.+.+++... ..|+...... . ++...|++++|.+-+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~--~---------~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVHNFVEHR--Y---------ALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCTTCHHHH--H---------HHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCchhHHHHH--H---------HHHHHHHHHhhHHHH
Confidence 35566665555543 45555555443 3454322222 1 444666776665543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.39 E-value=2.8e-05 Score=61.06 Aligned_cols=194 Identities=9% Similarity=-0.084 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhc----cCChHHHHHHHHhcC-CCChhhHHHHHHHHHh----cCChhHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYE----KGDLKYECKVFRKIT-QPSVFLWNTMIKGYSR----IDSHKNG 71 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~----~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~----~~~~~~a 71 (230)
++|.+.++...+. -+... ..+-..|. . .+++++|...|++.. ..+...+..+-..|.+ .+++++|
T Consensus 23 ~~A~~~~~~a~~~---~~~~a~~~lg~~~~--~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 97 (273)
T 1ouv_A 23 TQAKKYFEKACDL---KENSGCFNLGVLYY--QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 97 (273)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHH--cCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHH
Confidence 4677788777762 23334 56666777 7 999999999998865 4467778888888888 9999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhh----cCch--hhHHHhhhh---hHhHHHHHHHHHHh----cCCHHHHHHHHh
Q 042210 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAG--SLEKSCIVM---RVFVQNALISTYCL----CGEVDMARGIFY 138 (230)
Q Consensus 72 ~~~~~~M~~~g~~p~~~t~~~ll~~~~~----~~~~--a~~~~~~~~---~~~~~~~li~~y~~----~g~~~~A~~vf~ 138 (230)
...|++-.+.+ +...+..+-..+.+ .++. |...+.... +...+..+-..|.+ .+++++|...|+
T Consensus 98 ~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 98 LQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYD 174 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999987775 55677777778887 7887 888887776 67778888888888 899999999999
Q ss_pred hccC-CChhhhHHHHHHhhh--------cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccc----cCCccCC
Q 042210 139 MSCE-DDDGLHELIRIKAVD--------DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPR----VGNLEEG 205 (230)
Q Consensus 139 ~m~~-~~~~t~n~li~~~~~--------~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~----~g~~~~a 205 (230)
+..+ .+...+..+-..+.. ++|++.+++..+.+. |+ .+..+.. .+.+ .++.++|
T Consensus 175 ~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~--a~~~l~~---------~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 175 KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GG--GCFNLGA---------MQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HH--HHHHHHH---------HHHTTSSSSCCSTTH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HH--HHHHHHH---------HHHcCCCcccCHHHH
Confidence 8765 344455555444433 356666666555441 22 2222112 3334 8899999
Q ss_pred ccccccccccC
Q 042210 206 TPQEGRPHEHS 216 (230)
Q Consensus 206 ~~i~~~~~~~~ 216 (230)
...+....+.|
T Consensus 242 ~~~~~~a~~~~ 252 (273)
T 1ouv_A 242 IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99998888776
No 44
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.38 E-value=4.9e-06 Score=60.61 Aligned_cols=117 Identities=11% Similarity=0.029 Sum_probs=99.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+. ..|++++|...+++.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+...+..
T Consensus 46 ~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 46 LHLGIAYV--KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHH
Confidence 66778888 9999999999999875 4567788889999999999999999999987652 2356678888889999
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.|++ |...+.... +...+..+...|.+.|++++|.+.|++..+
T Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999 888888776 678899999999999999999999998754
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.31 E-value=3.4e-05 Score=56.74 Aligned_cols=144 Identities=14% Similarity=0.028 Sum_probs=109.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+=..|. +.|++++|.+.|++.. +-+...|..+-..|.+.|++++|...++......-. +...+..+-..+..
T Consensus 9 ~~lG~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 9 MDIGDKKR--TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence 55667777 9999999999999865 456778999999999999999999999987664322 34456666677777
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHH
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFP 165 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~ 165 (230)
.++. +...+.... +...+..+-..|.+.|++++|.+.|++..+ | +..+|..+-..+.. ++|.+.|+
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7887 777666665 788888999999999999999999998765 4 45567766555554 45666666
Q ss_pred HHHH
Q 042210 166 EYLV 169 (230)
Q Consensus 166 ~m~~ 169 (230)
+..+
T Consensus 166 ~al~ 169 (184)
T 3vtx_A 166 KALE 169 (184)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=9.3e-06 Score=62.53 Aligned_cols=180 Identities=7% Similarity=-0.045 Sum_probs=133.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----cccHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD--VRRD----NYTFPFLF 94 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g--~~p~----~~t~~~ll 94 (230)
..+-..+. +.|++++|...|++.. ..+...|..+-..|...|++++|...|++..+.. ..|+ ...|..+-
T Consensus 9 ~~~g~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFY--KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 44556677 9999999999998754 3677889999999999999999999999976532 2233 46788888
Q ss_pred HHhhhcCch--hhHHHhhhh-------------------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 95 KGFTRDIAG--SLEKSCIVM-------------------------------RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 95 ~~~~~~~~~--a~~~~~~~~-------------------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
..+.+.|++ |...+.... +...|..+-..|.+.|++++|.+.|++..
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 899999998 666665543 45677888899999999999999999876
Q ss_pred C--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCcccccccc
Q 042210 142 E--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPH 213 (230)
Q Consensus 142 ~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~ 213 (230)
+ | +..+|..+...+.. ++|.+.+++..+.. |+ ...+..+.. .+.+.|+.++|...+..+.
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~---------~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT---------AQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH---------HHHHTTCHHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHH
Confidence 5 3 45667766655543 46777777665543 44 333333222 6778899999998888776
Q ss_pred ccC
Q 042210 214 EHS 216 (230)
Q Consensus 214 ~~~ 216 (230)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 643
No 47
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.28 E-value=1.5e-05 Score=64.24 Aligned_cols=201 Identities=13% Similarity=0.027 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhh-----hccCCh-------HHHHHHHHhcC---CC-ChhhHHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLL-----YEKGDL-------KYECKVFRKIT---QP-SVFLWNTMIKGYS 63 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~-----~~~~~~-------~~a~~~~~~m~---~~-~~~~yn~li~~~~ 63 (230)
++|..+|++..+.. |+.. . ..+...+.. .+.|++ ++|..+|++.. .| +...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 35667787777653 4433 3 444444430 035786 89999998854 34 4558999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHH-hcCCHHHH
Q 042210 64 RIDSHKNGVLMYLDLLKSDVRRDNY--TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYC-LCGEVDMA 133 (230)
Q Consensus 64 ~~~~~~~a~~~~~~M~~~g~~p~~~--t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~-~~g~~~~A 133 (230)
+.|++++|..+|++..+ +.|+.. .|..+...+.+.|++ |..+++... +...|........ ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999877 456543 788899999999998 889998877 3334433333322 36999999
Q ss_pred HHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc--hhhhhhhhhcccccCCcccccccCCccC
Q 042210 134 RGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPD--TFMGEGLEVIPKSQAPREETPRVGNLEE 204 (230)
Q Consensus 134 ~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~--~~t~~~l~~~~~~~~~~~a~~~~g~~~~ 204 (230)
+++|++..+ | +...|..++..+.. +++..+|++........|+ ...+.. .+. ...+.|+.+.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~--~~~-------~~~~~g~~~~ 259 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR--FLA-------FESNIGDLAS 259 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH--HHH-------HHHHHSCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH--HHH-------HHHHcCCHHH
Confidence 999998765 4 45667777665544 4566666665554212343 223333 221 3346788888
Q ss_pred Ccccccccccc
Q 042210 205 GTPQEGRPHEH 215 (230)
Q Consensus 205 a~~i~~~~~~~ 215 (230)
+..++.++.+.
T Consensus 260 a~~~~~~a~~~ 270 (308)
T 2ond_A 260 ILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877665
No 48
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.23 E-value=3.4e-05 Score=52.72 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHh
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCL 126 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~ 126 (230)
.|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++ |...+.... +...+..+...|.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57778889999999999999999987653 23556778888889999998 888888776 67788889999999
Q ss_pred cCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHH
Q 042210 127 CGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLV 169 (230)
Q Consensus 127 ~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~ 169 (230)
.|++++|.+.|+++.+ | +..+|..+...+.. +++.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999998765 3 45667766666654 355555555543
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.21 E-value=1.3e-05 Score=68.78 Aligned_cols=144 Identities=12% Similarity=-0.003 Sum_probs=114.9
Q ss_pred HHHHHHHhhhccCCh-HHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDL-KYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~-~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~ 98 (230)
..+-..+. ..|++ ++|.+.|++.. +.+...|..+-..|.+.|++++|...|++..+.. |+...+..+-..+.
T Consensus 106 ~~lg~~~~--~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 106 MLKGKALN--VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHT--SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHT
T ss_pred HHHHHHHH--hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHH
Confidence 55556677 99999 99999999865 4457789999999999999999999999987654 77778888888898
Q ss_pred hc---------Cch--hhHHHhhhh-----hHhHHHHHHHHHHhc--------CCHHHHHHHHhhccC--C----Chhhh
Q 042210 99 RD---------IAG--SLEKSCIVM-----RVFVQNALISTYCLC--------GEVDMARGIFYMSCE--D----DDGLH 148 (230)
Q Consensus 99 ~~---------~~~--a~~~~~~~~-----~~~~~~~li~~y~~~--------g~~~~A~~vf~~m~~--~----~~~t~ 148 (230)
.. |++ |...+.... +...|..+-..|.+. |++++|.+.|++..+ | +...|
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 88 888 888888776 788899999999998 999999999998764 5 45567
Q ss_pred HHHHHHhhh----cchhhhHHHHHHH
Q 042210 149 ELIRIKAVD----DDLHELFPEYLVQ 170 (230)
Q Consensus 149 n~li~~~~~----~~~~~~~~~m~~~ 170 (230)
..+-..+.. ++|.+.|++..+.
T Consensus 262 ~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 262 LNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666555543 4566666665543
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.20 E-value=1.2e-05 Score=61.51 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhcc-----------CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcC
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEK-----------GDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRID 66 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~-----------~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~ 66 (230)
+|...++...+. .|+... ..+-..+. +. |++++|...|++.. .| +...|..+=..|...|
T Consensus 57 ~A~~~~~~al~~--~P~~~~a~~~lg~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 57 PALENGKTLVAR--TPRYLGGYMVLSEAYV--ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHH--HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 444555554444 244332 44445555 66 66677766666654 23 3455666666666667
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 67 SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
++++|...|++..+.. .+...+..+-.++...|++ |...++... +...+..+-..|.+.|++++|...|++
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777776665554 4555555566666666666 555555544 455555666666666666666666554
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.19 E-value=3e-05 Score=66.46 Aligned_cols=203 Identities=8% Similarity=-0.032 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHhcCCCCCc--------H-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHH
Q 042210 3 QLKQIHSQTIKLGLLTKPH--------C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~--------~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a 71 (230)
+|..+++.+.+. .|+.. + ..+-..+. ..|++++|...|+... .|+...|..+-..|...|++++|
T Consensus 220 ~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 220 KSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHF--LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 455666655543 34421 2 33335666 8899999999999876 67778889999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--
Q 042210 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE-- 142 (230)
Q Consensus 72 ~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-- 142 (230)
...|++..+.. +.+..+|..+-..+...|++ |...+.... +...|..+...|.+.|++++|...|++..+
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987643 22466788899999999999 888888876 678899999999999999999999998865
Q ss_pred C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCccccccc----------CCccCCcc
Q 042210 143 D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRV----------GNLEEGTP 207 (230)
Q Consensus 143 ~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~----------g~~~~a~~ 207 (230)
| +...|..+...+.. ++|.+.+++..+.....++.....+. .+. ....+.+. |++++|..
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~----~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP-LIG----KATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH-HHH----HHHHHHHHHTC----CCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH-HHH----HHHHHHHHhhccchhhhHhHHHHHHH
Confidence 4 44566666555443 56777787777665322222111100 000 00034444 89999999
Q ss_pred cccccccc
Q 042210 208 QEGRPHEH 215 (230)
Q Consensus 208 i~~~~~~~ 215 (230)
.+..+.+.
T Consensus 450 ~~~~a~~~ 457 (537)
T 3fp2_A 450 LLTKACEL 457 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.15 E-value=6.1e-05 Score=55.33 Aligned_cols=136 Identities=11% Similarity=-0.031 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.|+...+. .|+... ..+-..|. +.|++++|...+.... ..+...+..+-..+...++++.+...+.
T Consensus 22 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 97 (184)
T 3vtx_A 22 DGAIRAYKKVLKA--DPNNVETLLKLGKTYM--DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5788888888776 465444 67778888 9999999999998875 4455677777788888999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+..... +-+...+..+-..+.+.|++ |...++... +...|..+-..|.+.|++++|.+.|++..+
T Consensus 98 ~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 98 RAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 876532 12455777888889999999 888888776 788899999999999999999999998655
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.99 E-value=4.8e-05 Score=60.16 Aligned_cols=139 Identities=9% Similarity=-0.061 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHhc------CCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcCC-------C----ChhhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLG------LLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKITQ-------P----SVFLWNTMIKGY 62 (230)
Q Consensus 2 ~~a~~~~~~m~~~g------~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~-------~----~~~~yn~li~~~ 62 (230)
++|..+++...+.- -.|. ... ..+-..|. ..|++++|...+++... + ....|..+-..|
T Consensus 44 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR--DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 45666676665531 1222 233 56667788 99999999999987641 2 235688888999
Q ss_pred HhcCChhHHHHHHHHHHhC------CCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-------------hHhHHHHH
Q 042210 63 SRIDSHKNGVLMYLDLLKS------DVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFVQNAL 120 (230)
Q Consensus 63 ~~~~~~~~a~~~~~~M~~~------g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~~~~l 120 (230)
...|++++|...|++..+. +-.| ....+..+-..+...|++ |...+.... ...++..+
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL 201 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999997653 2223 345677788889999998 776666654 45678888
Q ss_pred HHHHHhcCCHHHHHHHHhhccC
Q 042210 121 ISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~ 142 (230)
...|.+.|++++|.+.|++..+
T Consensus 202 a~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 202 ASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999987763
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=0.00092 Score=52.20 Aligned_cols=162 Identities=9% Similarity=-0.052 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhc----cCChHHHHHHHHhcC-CCChhhHHHHHHHHHh----cCChhHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYE----KGDLKYECKVFRKIT-QPSVFLWNTMIKGYSR----IDSHKNG 71 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~----~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~----~~~~~~a 71 (230)
++|...++...+.+ ++.. ..+-..|. . .++.++|...|++.. ..+...+..+-..|.+ .+++++|
T Consensus 59 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~--~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 59 KKAASFYAKACDLN---YSNGCHLLGNLYY--SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHh--CCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHH
Confidence 46778888887776 4455 66667777 7 999999999999865 4466778888888888 9999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhh----cCch--hhHHHhhhh---hHhHHHHHHHHHHh----cCCHHHHHHHHh
Q 042210 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAG--SLEKSCIVM---RVFVQNALISTYCL----CGEVDMARGIFY 138 (230)
Q Consensus 72 ~~~~~~M~~~g~~p~~~t~~~ll~~~~~----~~~~--a~~~~~~~~---~~~~~~~li~~y~~----~g~~~~A~~vf~ 138 (230)
...|++-.+.+ +...+..+-..+.+ .++. |...+.... +...+..+-..|.+ .+++++|...|+
T Consensus 134 ~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 134 VEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 99999988766 44566667677776 6777 888887766 67788888889999 999999999999
Q ss_pred hccCC-ChhhhHHHHHHhhh--------cchhhhHHHHHHHh
Q 042210 139 MSCED-DDGLHELIRIKAVD--------DDLHELFPEYLVQM 171 (230)
Q Consensus 139 ~m~~~-~~~t~n~li~~~~~--------~~~~~~~~~m~~~~ 171 (230)
+..+. +...+..+-..+.. ++|.+.+++-.+.+
T Consensus 211 ~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 211 KACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 87653 34445544444432 46777777766665
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.98 E-value=0.00017 Score=62.33 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC--CCC-h-hhHHHHHHHHHhcCChhHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-V-FLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~-~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
+|+.+++...+. +.|+.. . ..+...+. +.|++++|..+|+... .|+ . ..|......+.+.|++++|..+|+
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEE--SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHH--hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566666655431 346544 4 77888888 9999999999999875 444 2 479999988889999999999999
Q ss_pred HHHhCCCCCC-cccHHHHHHH-hhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-
Q 042210 77 DLLKSDVRRD-NYTFPFLFKG-FTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD- 144 (230)
Q Consensus 77 ~M~~~g~~p~-~~t~~~ll~~-~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~- 144 (230)
+-.+. .|+ ...|...... +...|+. |..+|+... +...|..++..+.+.|+.++|+.+|++... |.
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 97664 333 2222221112 2357777 888888776 788999999999999999999999998754 22
Q ss_pred ----hhhhHHHHHHhh
Q 042210 145 ----DGLHELIRIKAV 156 (230)
Q Consensus 145 ----~~t~n~li~~~~ 156 (230)
...|...+.-..
T Consensus 459 ~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 459 PEKSGEIWARFLAFES 474 (530)
T ss_dssp GGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 226766655433
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.96 E-value=0.00016 Score=65.46 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=115.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~ 98 (230)
+.+=..|. +.|++++|.+.|++.. .| +...|+.+=..|.+.|++++|...|++-.+. .|+ ...|..+-.++.
T Consensus 13 ~nLG~~~~--~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 13 NNLANIKR--EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 66777888 9999999999999865 44 5678999999999999999999999997653 453 557888889999
Q ss_pred hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHHHHHHhh----hcchhhhH
Q 042210 99 RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGLHELIRIKAV----DDDLHELF 164 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~li~~~~----~~~~~~~~ 164 (230)
+.|++ |.+.++... +...|+.+-..|.+.|++++|.+.|++..+ |+ ...|..+...+. .+++.+.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999 888888776 788999999999999999999999998765 54 456666655443 35666666
Q ss_pred HHHHH
Q 042210 165 PEYLV 169 (230)
Q Consensus 165 ~~m~~ 169 (230)
++..+
T Consensus 169 ~kal~ 173 (723)
T 4gyw_A 169 KKLVS 173 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 57
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.94 E-value=0.00019 Score=53.77 Aligned_cols=114 Identities=10% Similarity=0.016 Sum_probs=94.8
Q ss_pred HHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--
Q 042210 26 TRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-- 103 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-- 103 (230)
-..+. +.|++++|...|++...|+...|..+-..|.+.|++++|...|++..+.. +.+...|..+-.++.+.|++
T Consensus 13 g~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 13 GVLAA--DKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHH--HTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH--HhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 34566 88999999999999988888899999999999999999999999976643 23456778888888899998
Q ss_pred hhHHHhhhh-----hH----------------hHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 104 SLEKSCIVM-----RV----------------FVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 104 a~~~~~~~~-----~~----------------~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
|...+.... +. ..+..+-..|.+.|++++|.+.|+...+
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777665 22 7788888999999999999999998765
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.92 E-value=0.00015 Score=62.71 Aligned_cols=196 Identities=15% Similarity=0.107 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhc-------cCChH-------HHHHHHHhcC---CC-ChhhHHHHHHHHH
Q 042210 4 LKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYE-------KGDLK-------YECKVFRKIT---QP-SVFLWNTMIKGYS 63 (230)
Q Consensus 4 a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~-------~~~~~-------~a~~~~~~m~---~~-~~~~yn~li~~~~ 63 (230)
+..++++..+. .|+. .. ......+. + .|+++ +|..+|+... .| +...|..+...+.
T Consensus 257 a~~~y~~al~~--~p~~~~~w~~~~~~~~--~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 257 VMFAYEQCLLV--LGHHPDIWYEAAQYLE--QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHH--HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHH--HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44566666554 2432 33 44555555 4 68987 8999999865 24 4678999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCc--ccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHH
Q 042210 64 RIDSHKNGVLMYLDLLKSDVRRDN--YTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDM 132 (230)
Q Consensus 64 ~~~~~~~a~~~~~~M~~~g~~p~~--~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~ 132 (230)
+.|++++|..+|++..+ +.|+. ..|......+.+.|++ |..+++... ......+++. |...|+.++
T Consensus 333 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~-~~~~~~~~~ 409 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME-YYCSKDKSV 409 (530)
T ss_dssp HTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH-HHHTCCHHH
T ss_pred hcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHcCChhH
Confidence 99999999999999887 45653 3688888888888888 888888877 1222222332 336899999
Q ss_pred HHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc--hhhhhhhhhcccccCCcccccccCCcc
Q 042210 133 ARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQMLALPD--TFMGEGLEVIPKSQAPREETPRVGNLE 203 (230)
Q Consensus 133 A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~--~~t~~~l~~~~~~~~~~~a~~~~g~~~ 203 (230)
|+++|+...+ | +...|..++..... +++..+|++........|+ ...+.. .+. -..+.|+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~--~~~-------~e~~~G~~~ 480 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR--FLA-------FESNIGDLA 480 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH--HHH-------HHHHSSCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH--HHH-------HHHHcCCHH
Confidence 9999997654 5 46778887766554 3556666655554312232 112322 121 223568888
Q ss_pred CCcccccccccc
Q 042210 204 EGTPQEGRPHEH 215 (230)
Q Consensus 204 ~a~~i~~~~~~~ 215 (230)
.+..+..++.+.
T Consensus 481 ~~~~~~~r~~~~ 492 (530)
T 2ooe_A 481 SILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877766554
No 59
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.87 E-value=2.2e-05 Score=61.08 Aligned_cols=118 Identities=11% Similarity=-0.004 Sum_probs=91.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC----------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT----------QP-SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS------DVRR 85 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~----------~~-~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~------g~~p 85 (230)
..+-..|. ..|++++|...+++.. .| ....|+.+-..|...|++++|...|++.... .-.|
T Consensus 47 ~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 47 NILALVYR--DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHH--HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 56667777 9999999999998764 11 2356888889999999999999999987653 1122
Q ss_pred -CcccHHHHHHHhhhcCch--hhHHHhhhh-------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 86 -DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 86 -~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
...++..+-..+...|++ |...+.... ...++..+-..|.+.|++++|...|++..+
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355777888888899998 666666654 456788888999999999999999987753
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.86 E-value=3.9e-05 Score=60.70 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=106.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCC--------CC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQ--------PS---VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS------DVRR 85 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~--------~~---~~~yn~li~~~~~~~~~~~a~~~~~~M~~~------g~~p 85 (230)
..+-..+. ..|++++|...|++... .+ ...|..+-..|...|++++|...|++.... +-.|
T Consensus 31 ~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 31 HNLVIQYA--SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 55667777 99999999999988652 12 346888888999999999999999997653 2222
Q ss_pred -CcccHHHHHHHhhhcCch--hhHHHhhhh-------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-------
Q 042210 86 -DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFVQNALISTYCLCGEVDMARGIFYMSCE------- 142 (230)
Q Consensus 86 -~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~------- 142 (230)
...++..+-..+...|++ |...+.... ....+..+-..|.+.|++++|.+.|++..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 455788888899999998 666666554 456678888999999999999999987753
Q ss_pred C-C---hhhhHHHHHHhh----hcchhhhHHHHHHH
Q 042210 143 D-D---DGLHELIRIKAV----DDDLHELFPEYLVQ 170 (230)
Q Consensus 143 ~-~---~~t~n~li~~~~----~~~~~~~~~~m~~~ 170 (230)
+ + ..+|..+...+. .++|.+.+++..+.
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1 224444444443 35777777777653
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.83 E-value=0.00015 Score=57.55 Aligned_cols=200 Identities=9% Similarity=-0.050 Sum_probs=132.1
Q ss_pred hhHHHHHHHHHHhcCCCCC-----cH-HHHHHHHhhhccCChHHHHHHHHhcC-----C----CChhhHHHHHHHHHhcC
Q 042210 2 HQLKQIHSQTIKLGLLTKP-----HC-PKQTRYLLLYEKGDLKYECKVFRKIT-----Q----PSVFLWNTMIKGYSRID 66 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~----~~~~~yn~li~~~~~~~ 66 (230)
++|...++...+.. |+. .. ..+-..|. ..|++++|.+.+++.. . .....|..+-..|...|
T Consensus 22 ~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 22 RAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYF--YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp HHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 56888888888873 443 33 56667788 9999999999998753 1 12456788888899999
Q ss_pred ChhHHHHHHHHHHhCC-CCCC----cccHHHHHHHhhhcCc--------------------h--hhHHHhhhh-------
Q 042210 67 SHKNGVLMYLDLLKSD-VRRD----NYTFPFLFKGFTRDIA--------------------G--SLEKSCIVM------- 112 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~g-~~p~----~~t~~~ll~~~~~~~~--------------------~--a~~~~~~~~------- 112 (230)
++++|...+++..+.. -.++ ..++..+-..+...|+ + |...+....
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998865421 1122 3367777778888888 6 655555543
Q ss_pred ----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----CCh----hhhHHHHHHhh----hcchhhhHHHHHHHhhhcC
Q 042210 113 ----RVFVQNALISTYCLCGEVDMARGIFYMSCE-----DDD----GLHELIRIKAV----DDDLHELFPEYLVQMLALP 175 (230)
Q Consensus 113 ----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-----~~~----~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p 175 (230)
....+..+-..|...|++++|.+.|++..+ ++. .+|..+...+. .+++.+.+++......-.+
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 345778888899999999999999987654 221 24444433333 3466677766655432222
Q ss_pred c----hhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 176 D----TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 176 ~----~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
+ ..++..+ -..+...|+.++|...+....+
T Consensus 258 ~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 258 DRAVEAQSCYSL---------GNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp CHHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHH---------HHHHHHhcCHHHHHHHHHHHHH
Confidence 2 1122221 1156678888888887776554
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.80 E-value=0.00024 Score=59.31 Aligned_cols=174 Identities=7% Similarity=-0.095 Sum_probs=125.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCC-CcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVRR-DNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~-~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~ 97 (230)
..+-..+. +.|+.++|.+.+++.. +.+...|+.+-..+.+.|+ +++|+..|++..+. .| +...|..+-.++
T Consensus 101 ~~lg~~~~--~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 101 DYFRAVLQ--RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHH--HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHH--HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 44556666 8899999999999875 4456788999899999996 99999999998764 33 455788888888
Q ss_pred hhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh-----cch--
Q 042210 98 TRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD-----DDL-- 160 (230)
Q Consensus 98 ~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~-----~~~-- 160 (230)
.+.|++ |...++... +...|..+-..|.+.|++++|...|++..+ | +...|+.+-..+.. ++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 899998 888888887 788899999999999999999999998875 4 56678876555443 344
Q ss_pred ---hhhHHHHHHHhhhcCch-hhhhhhhhcccccCCcccccccC--CccCCccccccc
Q 042210 161 ---HELFPEYLVQMLALPDT-FMGEGLEVIPKSQAPREETPRVG--NLEEGTPQEGRP 212 (230)
Q Consensus 161 ---~~~~~~m~~~~~~~p~~-~t~~~l~~~~~~~~~~~a~~~~g--~~~~a~~i~~~~ 212 (230)
++.+++... ..|+. ..+..+.. .+.+.| +.+++......+
T Consensus 257 ~~el~~~~~Al~---l~P~~~~a~~~l~~---------ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 257 EREVQYTLEMIK---LVPHNESAWNYLKG---------ILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHH---HSTTCHHHHHHHHH---------HHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCCCCHHHHHHHHH---------HHHccCccchHHHHHHHHHh
Confidence 344554443 44552 23333222 233445 566666655544
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.77 E-value=0.002 Score=48.78 Aligned_cols=118 Identities=5% Similarity=-0.053 Sum_probs=94.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---C-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---Q-PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~-~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~ 97 (230)
...-..+. +.|++++|...|++.. + ++...|..+-.++.+.|++++|...|++-.+. .| +...|..+-..+
T Consensus 11 ~~~g~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 11 KNEGNDAL--NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHH
T ss_pred HHHHHHHH--HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 44455666 9999999999999865 3 67777777888899999999999999997754 34 445778888889
Q ss_pred hhcCch--hhHHHhhhh-----hH-------hHHHHHHHHHHhcCCHHHHHHHHhhccC--CC
Q 042210 98 TRDIAG--SLEKSCIVM-----RV-------FVQNALISTYCLCGEVDMARGIFYMSCE--DD 144 (230)
Q Consensus 98 ~~~~~~--a~~~~~~~~-----~~-------~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~ 144 (230)
...|+. |...++... +. ..|..+=..|.+.|++++|.+.|++..+ |+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999998 888887776 34 4577777788899999999999998876 55
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.75 E-value=0.0001 Score=60.96 Aligned_cols=200 Identities=11% Similarity=0.012 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHHhcCCCCC-----cH-HHHHHHHhhhccCChHHHHHHHHhcC---------CCChhhHHHHHHHHHhcC
Q 042210 2 HQLKQIHSQTIKLGLLTKP-----HC-PKQTRYLLLYEKGDLKYECKVFRKIT---------QPSVFLWNTMIKGYSRID 66 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---------~~~~~~yn~li~~~~~~~ 66 (230)
++|...++...+.+ |+. .. ..+-..|. ..|++++|...|++.. ......|..+-..|...|
T Consensus 65 ~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 65 RAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYF--YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp HHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 46788888887763 442 23 55667777 8999999999988754 112356788888888999
Q ss_pred ChhHHHHHHHHHHhC----CCC-CCcccHHHHHHHhhhcCc-----------------h--hhHHHhhhh----------
Q 042210 67 SHKNGVLMYLDLLKS----DVR-RDNYTFPFLFKGFTRDIA-----------------G--SLEKSCIVM---------- 112 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~----g~~-p~~~t~~~ll~~~~~~~~-----------------~--a~~~~~~~~---------- 112 (230)
++++|...|++..+. +-. ....++..+-..+...|+ + |...+....
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999886543 111 133467777778888888 6 655555543
Q ss_pred -hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----CCh----hhhHHHHHHhhh----cchhhhHHHHHHHhhhcCc--
Q 042210 113 -RVFVQNALISTYCLCGEVDMARGIFYMSCE-----DDD----GLHELIRIKAVD----DDLHELFPEYLVQMLALPD-- 176 (230)
Q Consensus 113 -~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-----~~~----~t~n~li~~~~~----~~~~~~~~~m~~~~~~~p~-- 176 (230)
....+..+-..|...|++++|.+.|++..+ ++. .+|..+...+.. ++|.+.+++..+...-..+
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345778888899999999999999987654 221 144444444432 4666666665554421122
Q ss_pred --hhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 177 --TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 177 --~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
..++..+ -..+.+.|++++|...+....+
T Consensus 301 ~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 301 VEAQSCYSL---------GNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHH
Confidence 1122221 1156678888888877766554
No 65
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.72 E-value=0.00045 Score=55.88 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=104.5
Q ss_pred CCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--C---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----C
Q 042210 18 TKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--Q---PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-----D 86 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~---~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-----~ 86 (230)
++... ..+-..+. ..|++++|.+++.+.. . -+...+-..+..+.+.|+++.|.+.+++|.+. .| +
T Consensus 98 ~~~~~~~~la~i~~--~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~ 173 (310)
T 3mv2_B 98 NSPYELYLLATAQA--ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGD 173 (310)
T ss_dssp CCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHH
T ss_pred CCcHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccc
Confidence 44444 55556777 8999999999999863 2 24567888899999999999999999999774 55 3
Q ss_pred cccHHHHHHHhhh--cC--ch--hhHHHhhhh----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC------------C-
Q 042210 87 NYTFPFLFKGFTR--DI--AG--SLEKSCIVM----RVFVQNALISTYCLCGEVDMARGIFYMSCE------------D- 143 (230)
Q Consensus 87 ~~t~~~ll~~~~~--~~--~~--a~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~------------~- 143 (230)
..+..-|..++.. .| +. |..+|+++. +..+...|++++.+.|++++|+++++.+.+ |
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 5566666666333 23 55 999999987 223456677789999999999999986543 3
Q ss_pred Chhhh-HHH-HHHhhhcchhhhHHHHHHHh
Q 042210 144 DDGLH-ELI-RIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 144 ~~~t~-n~l-i~~~~~~~~~~~~~~m~~~~ 171 (230)
|.-+. |.+ +.....+++.+++.++.+..
T Consensus 254 ~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 254 KPTFLANQITLALMQGLDTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhChHHHHHHHHHHHhC
Confidence 33344 333 22223356777777776654
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.71 E-value=0.00082 Score=57.53 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhc---------CCh
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRI---------DSH 68 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~---------~~~ 68 (230)
++|.+.++...+.. |+. .. ..+-..|. +.|++++|.+.|++.. .|+...|..+-..|... |++
T Consensus 120 ~~A~~~~~~al~~~--p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~ 195 (474)
T 4abn_A 120 PEAEVLLSKAVKLE--PELVEAWNQLGEVYW--KKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHV 195 (474)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhH
Confidence 67888888887763 553 34 77778888 9999999999999875 67778888888899998 999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc--------Cch--hhHHHhhhh--------hHhHHHHHHHHHHhcCCH
Q 042210 69 KNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD--------IAG--SLEKSCIVM--------RVFVQNALISTYCLCGEV 130 (230)
Q Consensus 69 ~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~--------~~~--a~~~~~~~~--------~~~~~~~li~~y~~~g~~ 130 (230)
++|...|++..+.. +-+...|..+-.++... |++ |...++... +...|..+-..|.+.|++
T Consensus 196 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 196 MDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999976642 12456788888888887 777 777777765 457788899999999999
Q ss_pred HHHHHHHhhccC--CCh-hhhHHH
Q 042210 131 DMARGIFYMSCE--DDD-GLHELI 151 (230)
Q Consensus 131 ~~A~~vf~~m~~--~~~-~t~n~l 151 (230)
++|.+.|++..+ |+. ..|..+
T Consensus 275 ~~A~~~~~~al~l~p~~~~a~~~l 298 (474)
T 4abn_A 275 GEALEGFSQAAALDPAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999998764 543 345544
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.71 E-value=0.00054 Score=61.94 Aligned_cols=134 Identities=6% Similarity=-0.006 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.|++..+. .|+... ..+=..|. +.|++++|.+.|++.. .| +...|+.+=..|.+.|++++|.+.|+
T Consensus 26 ~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~--~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 26 EEAVRLYRKALEV--FPEFAAAHSNLASVLQ--QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5788888887766 466544 77778888 9999999999999865 44 56789999999999999999999999
Q ss_pred HHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 77 DLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 77 ~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+-.+. .| +...|..+-.++.+.|++ |.+.++... +...|..|...|.+.|++++|.+.|++..
T Consensus 102 kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 102 RAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 86653 34 455788899999999999 888888776 78899999999999999999998887664
No 68
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.69 E-value=0.00073 Score=45.30 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhc
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLC 127 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~ 127 (230)
|..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++ |...+..+. +..++..+...|.+.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3334444444444444444444433321 11222333344444444444 333333332 455667777888888
Q ss_pred CCHHHHHHHHhhccC
Q 042210 128 GEVDMARGIFYMSCE 142 (230)
Q Consensus 128 g~~~~A~~vf~~m~~ 142 (230)
|++++|...|++..+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888887654
No 69
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.68 E-value=0.00072 Score=49.42 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh--
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGF-- 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~-- 97 (230)
...-..+. +.|++++|...|++.. +.+...|..+-..+.+.|++++|...|++.... .|+. .+..+...+
T Consensus 10 ~~~a~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~-~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELL--QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDN-SYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCH-HHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCCh-HHHHHHHHHHH
Confidence 34455677 9999999999999976 445678888999999999999999999886443 2333 222222111
Q ss_pred hh-cCch-hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC---hhhhHHHHHHhh----hcchh
Q 042210 98 TR-DIAG-SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD---DGLHELIRIKAV----DDDLH 161 (230)
Q Consensus 98 ~~-~~~~-a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~---~~t~n~li~~~~----~~~~~ 161 (230)
.+ .+.. +...++... +...+..+-..|.+.|++++|...|++..+ |+ ...|..+...+. .+++.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 11 1222 455555544 688899999999999999999999998865 44 346666655444 34677
Q ss_pred hhHHHHHHH
Q 042210 162 ELFPEYLVQ 170 (230)
Q Consensus 162 ~~~~~m~~~ 170 (230)
..+++....
T Consensus 165 ~~y~~al~~ 173 (176)
T 2r5s_A 165 SKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 70
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.68 E-value=0.00026 Score=58.05 Aligned_cols=200 Identities=9% Similarity=-0.052 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHhcCCCCC-----cH-HHHHHHHhhhccCChHHHHHHHHhcC-----CC----ChhhHHHHHHHHHhcC
Q 042210 2 HQLKQIHSQTIKLGLLTKP-----HC-PKQTRYLLLYEKGDLKYECKVFRKIT-----QP----SVFLWNTMIKGYSRID 66 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~----~~~~yn~li~~~~~~~ 66 (230)
++|...++...+.+ |+. .+ ..+-..|. ..|++++|...|++.. .. ....|..+-..|...|
T Consensus 26 ~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 26 RAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYF--YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp HHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 46788888887773 432 23 55667777 9999999999988753 11 1346778888888999
Q ss_pred ChhHHHHHHHHHHhCC-CCCC----cccHHHHHHHhhhcCc--------------------h--hhHHHhhhh-------
Q 042210 67 SHKNGVLMYLDLLKSD-VRRD----NYTFPFLFKGFTRDIA--------------------G--SLEKSCIVM------- 112 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~g-~~p~----~~t~~~ll~~~~~~~~--------------------~--a~~~~~~~~------- 112 (230)
++++|...|++..... -.++ ..++..+-..+...|+ + |...+....
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 181 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998865421 1112 3367777778888888 6 555555443
Q ss_pred ----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-----CCh----hhhHHHHHHhh----hcchhhhHHHHHHHhhhcC
Q 042210 113 ----RVFVQNALISTYCLCGEVDMARGIFYMSCE-----DDD----GLHELIRIKAV----DDDLHELFPEYLVQMLALP 175 (230)
Q Consensus 113 ----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-----~~~----~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p 175 (230)
...++..+-..|...|++++|.+.|++..+ ++. .+|..+-..+. .++|.+.+++..+...-.+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 345778888899999999999999887654 221 24444444443 3466666666554432222
Q ss_pred c----hhhhhhhhhcccccCCcccccccCCccCCccccccccc
Q 042210 176 D----TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 176 ~----~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~ 214 (230)
+ ..++..+ -..+.+.|++++|...+....+
T Consensus 262 ~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 262 DRAVEAQSCYSL---------GNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp CHHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH---------HHHHHHhCcHHHHHHHHHHHHH
Confidence 2 1122221 1156678888888887766554
No 71
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.64 E-value=0.0011 Score=44.45 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=77.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+. +.|++++|.+.|+++. +.+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus 13 ~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 13 YNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 55667788 9999999999999875 4456788889999999999999999999987643 2355678888889999
Q ss_pred cCch--hhHHHhhhh-----hHhHHHHHHHHHH
Q 042210 100 DIAG--SLEKSCIVM-----RVFVQNALISTYC 125 (230)
Q Consensus 100 ~~~~--a~~~~~~~~-----~~~~~~~li~~y~ 125 (230)
.|++ |...+.... +...+..+-..+.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9998 888877765 4444444444443
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.62 E-value=0.001 Score=63.56 Aligned_cols=171 Identities=16% Similarity=0.069 Sum_probs=110.4
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
..+=.++. +.|++++|.+-|.+. .|...|.-++.+|.+.|++++|.+.|..-++.. ++....+.+..+|++.++
T Consensus 1109 sqLAKAql--~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1109 SQLAKAQL--QKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 66777777 888888888888665 555678889999999999999999997655443 333334457777777776
Q ss_pred h-hhHHH-hhhh-------------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHh
Q 042210 103 G-SLEKS-CIVM-------------------------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKA 155 (230)
Q Consensus 103 ~-a~~~~-~~~~-------------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~ 155 (230)
+ ..+-+ .... ....|..+...|.+.|++++|.+.+.+- .+..+|..+-.+|
T Consensus 1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHH
Confidence 6 22111 1110 3557788888888888888888888865 4567777666666
Q ss_pred hhcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 156 VDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 156 ~~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
...+-++++......-.+.||.. .. +.. .|.+.|.+++|..+++..
T Consensus 1261 ve~~Ef~LA~~cgl~Iiv~~deL--ee--li~-------yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIVVHADEL--EE--LIN-------YYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred hhhhHHHHHHHHHHhhhcCHHHH--HH--HHH-------HHHHcCCHHHHHHHHHHH
Confidence 55555555554433222233332 22 222 566777777777766433
No 73
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.60 E-value=0.00085 Score=58.52 Aligned_cols=135 Identities=5% Similarity=-0.087 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.+++..+. .|+.. . ..+-..+. +.|++++|.+.|++.. +.+...|..+-..|.+.|++++|...|+
T Consensus 6 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 6 PRELLQLRAAVRH--RPQDFVAWLMLADAEL--GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -----------------CCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4566677665543 45543 3 66777888 9999999999999865 3456788889899999999999999999
Q ss_pred HHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhc---CCHHHHHHHHhhccC
Q 042210 77 DLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLC---GEVDMARGIFYMSCE 142 (230)
Q Consensus 77 ~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~---g~~~~A~~vf~~m~~ 142 (230)
+..+. .| +...+..+-.++.+.|+. |.+.++... +...+..+...|.+. |+.++|.+.|++..+
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 97664 24 456788888899999999 888888776 678888999999999 999999999997754
No 74
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.52 E-value=0.0053 Score=51.10 Aligned_cols=192 Identities=10% Similarity=-0.024 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCC-hHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGD-LKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~-~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
++|...++..++. .|+... +.+-..+. +.|+ +++|...|++.. ..+...|+.+=..+.+.|++++|+..|
T Consensus 114 ~~Al~~~~~al~l--~P~~~~a~~~~g~~l~--~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 114 ERAFKLTRDAIEL--NAANYTVWHFRRVLLK--SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHh--CccCHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5677788877765 466554 66777777 9996 999999999876 456778999999999999999999999
Q ss_pred HHHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHh-cCCHHHH-----HHHHhhcc
Q 042210 76 LDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCL-CGEVDMA-----RGIFYMSC 141 (230)
Q Consensus 76 ~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~-~g~~~~A-----~~vf~~m~ 141 (230)
++..+. .| +...|..+-.++.+.|++ |...++... +...|+.+-..|.+ .|..++| ...|++..
T Consensus 190 ~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 190 ADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 998764 33 556788888888899998 888888887 78899999999999 6665777 36676654
Q ss_pred C--C-ChhhhHHHHHHhhh------cchhhhHHHHHHHhhhcCch-hhhhhhhhcccccCCcccccccC--------C-c
Q 042210 142 E--D-DDGLHELIRIKAVD------DDLHELFPEYLVQMLALPDT-FMGEGLEVIPKSQAPREETPRVG--------N-L 202 (230)
Q Consensus 142 ~--~-~~~t~n~li~~~~~------~~~~~~~~~m~~~~~~~p~~-~t~~~l~~~~~~~~~~~a~~~~g--------~-~ 202 (230)
. | +...|+.+-..+.. +++++.+.++ ...|+. ..+..+.- .+.+.| + +
T Consensus 268 ~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~p~~~~al~~La~---------~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 268 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPSHSSPYLIAFLVD---------IYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTTCCCHHHHHHHHH---------HHHHHHHTTCSSHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccCCCCHHHHHHHHH---------HHHHHhcccccchHHHH
Confidence 3 4 45677776554443 3455655554 244553 33333211 344432 2 4
Q ss_pred cCCccccccc
Q 042210 203 EEGTPQEGRP 212 (230)
Q Consensus 203 ~~a~~i~~~~ 212 (230)
++|..++..+
T Consensus 335 ~~A~~~~~~l 344 (382)
T 2h6f_A 335 NKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7787777776
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.49 E-value=0.0018 Score=56.49 Aligned_cols=136 Identities=10% Similarity=-0.062 Sum_probs=92.4
Q ss_pred cCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhHH
Q 042210 34 KGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEK 107 (230)
Q Consensus 34 ~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~ 107 (230)
.|++++|.+.|++.. +.+...|..+-..|.+.|++++|...|++-.+. .| +...|..+-..+...|++ |.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 468889999998865 345678888989999999999999999997664 34 456788888899999999 8888
Q ss_pred Hhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhh-------cchhhhHHHHHHHh
Q 042210 108 SCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVD-------DDLHELFPEYLVQM 171 (230)
Q Consensus 108 ~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~-------~~~~~~~~~m~~~~ 171 (230)
++... +...+..+-..|.+.|++++|.+.|++..+ | +...|..+...+.. ++|.+.+++..+..
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88776 778899999999999999999999998765 4 34555555444432 35666666655544
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.49 E-value=0.0025 Score=48.23 Aligned_cols=160 Identities=9% Similarity=-0.061 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
++|...|+...+..-.++... ..+-..+. +.|++++|...|++.. .| +...|..+-..|...|++++|...|++
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCAD--NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHH--HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 568888888887764355555 55777777 9999999999999875 34 456788899999999999999999999
Q ss_pred HHhCCCCCCc--------ccHHHHHHHhhhcCch--hhHHHhhhh----h---HhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 042210 78 LLKSDVRRDN--------YTFPFLFKGFTRDIAG--SLEKSCIVM----R---VFVQNALISTYCLCGEVDMARGIFYMS 140 (230)
Q Consensus 78 M~~~g~~p~~--------~t~~~ll~~~~~~~~~--a~~~~~~~~----~---~~~~~~li~~y~~~g~~~~A~~vf~~m 140 (230)
..+. .|+. ..|..+=..+.+.|++ |...+.... + ...|..+-..|...|+. +++++
T Consensus 102 al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a 174 (228)
T 4i17_A 102 GIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD-----VLRKA 174 (228)
T ss_dssp HHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 7653 2432 2355566667777888 888888776 2 34556666666555443 33333
Q ss_pred cC---CChhhhHHHHHH--hhhcchhhhHHHHHHH
Q 042210 141 CE---DDDGLHELIRIK--AVDDDLHELFPEYLVQ 170 (230)
Q Consensus 141 ~~---~~~~t~n~li~~--~~~~~~~~~~~~m~~~ 170 (230)
.. .+...|...... ...++|++.+++..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 175 TPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp GGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 32 233444443321 1135666666665544
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.49 E-value=0.0018 Score=45.93 Aligned_cols=82 Identities=9% Similarity=0.047 Sum_probs=48.1
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
..|++++|...|+... +.+...|..+-..+...|++++|...|++..+.. |+
T Consensus 25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~----------------------- 79 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK----------------------- 79 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------------
T ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------------------
Confidence 5566666666665543 3344555555555666666666666665543321 11
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...|..+-..|.+.|++++|...|++..+
T Consensus 80 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 80 ---YIKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344566666677777788888777776654
No 78
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.48 E-value=0.00021 Score=58.59 Aligned_cols=181 Identities=12% Similarity=-0.015 Sum_probs=122.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCC----hhhHHHHHHHHHhcCC--------------------hhHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPS----VFLWNTMIKGYSRIDS--------------------HKNGVL 73 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~----~~~yn~li~~~~~~~~--------------------~~~a~~ 73 (230)
..+-..|. ..|++++|...+++.. .++ ...|..+-..|...|+ +++|..
T Consensus 91 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 91 GNLGNTLK--VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 55566777 9999999999998764 122 3467888888888999 999999
Q ss_pred HHHHHHh----CCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHH
Q 042210 74 MYLDLLK----SDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARG 135 (230)
Q Consensus 74 ~~~~M~~----~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~ 135 (230)
.+++... .+-.| ...++..+-..+...|++ |...+.... ....+..+-..|.+.|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9887543 22122 234677777888888988 777777665 23478888999999999999999
Q ss_pred HHhhccC-----CC----hhhhHHHHHHhh----hcchhhhHHHHHHHhhhcCc----hhhhhhhhhcccccCCcccccc
Q 042210 136 IFYMSCE-----DD----DGLHELIRIKAV----DDDLHELFPEYLVQMLALPD----TFMGEGLEVIPKSQAPREETPR 198 (230)
Q Consensus 136 vf~~m~~-----~~----~~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p~----~~t~~~l~~~~~~~~~~~a~~~ 198 (230)
.|++..+ ++ ..+|..+-..+. .++|.+.+++........++ ..++..+.. .+.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~---------~~~~ 319 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN---------AYTA 319 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH---------HHHH
Confidence 9987653 22 234444444443 35677777766554422222 112222111 6678
Q ss_pred cCCccCCccccccccc
Q 042210 199 VGNLEEGTPQEGRPHE 214 (230)
Q Consensus 199 ~g~~~~a~~i~~~~~~ 214 (230)
.|++++|...+....+
T Consensus 320 ~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8999999887776544
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.47 E-value=0.0053 Score=55.00 Aligned_cols=150 Identities=9% Similarity=-0.129 Sum_probs=110.2
Q ss_pred hhHHHHHHHHH------HhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhH
Q 042210 2 HQLKQIHSQTI------KLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKN 70 (230)
Q Consensus 2 ~~a~~~~~~m~------~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~ 70 (230)
++|.+.++... .....|+.. . ..+-..+. +.|++++|.+.|++.. ..+...|..+=..|.+.|++++
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 485 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL--DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDS 485 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH--hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHH
Confidence 35666666665 113445543 3 66667788 9999999999999876 4566788888889999999999
Q ss_pred HHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch-hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC-
Q 042210 71 GVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG-SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE- 142 (230)
Q Consensus 71 a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~-a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~- 142 (230)
|...|++..+. .| +...|..+-.++.+.|++ ..+.++... +...|..+-..|.+.|++++|.+.|++..+
T Consensus 486 A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 486 ATKHFTEVLDT--FPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 99999997653 24 455677788888888887 433333333 778899999999999999999999999876
Q ss_pred -CC-hhhhHHHHHHh
Q 042210 143 -DD-DGLHELIRIKA 155 (230)
Q Consensus 143 -~~-~~t~n~li~~~ 155 (230)
|+ ...|..+...+
T Consensus 564 ~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 564 SRHFTTARLTSAVTL 578 (681)
T ss_dssp STTHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHH
Confidence 54 34555554444
No 80
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.45 E-value=0.00029 Score=55.82 Aligned_cols=182 Identities=12% Similarity=-0.011 Sum_probs=122.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCC----hhhHHHHHHHHHhcCC--------------------hhHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPS----VFLWNTMIKGYSRIDS--------------------HKNGVL 73 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~----~~~yn~li~~~~~~~~--------------------~~~a~~ 73 (230)
..+-..|. ..|++++|...+++.. .++ ..+|..+-..|...|+ +++|..
T Consensus 87 ~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 87 GNLGNTLK--VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 55667777 9999999999998864 233 3377888888888999 999999
Q ss_pred HHHHHHhC----CCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHH
Q 042210 74 MYLDLLKS----DVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARG 135 (230)
Q Consensus 74 ~~~~M~~~----g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~ 135 (230)
.+++.... +-.| ....+..+-..+...|++ |...+.... ....+..+...|.+.|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99875432 2111 234677777888888988 777777665 23478888999999999999999
Q ss_pred HHhhccC-----CC----hhhhHHHHHHhh----hcchhhhHHHHHHHhhhcCc----hhhhhhhhhcccccCCcccccc
Q 042210 136 IFYMSCE-----DD----DGLHELIRIKAV----DDDLHELFPEYLVQMLALPD----TFMGEGLEVIPKSQAPREETPR 198 (230)
Q Consensus 136 vf~~m~~-----~~----~~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p~----~~t~~~l~~~~~~~~~~~a~~~ 198 (230)
.|++..+ ++ ..++..+-..+. .++|.+.+++..+.....++ ..++..+ -..+.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l---------a~~~~~ 315 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL---------GNAYTA 315 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH---------HHHHHH
Confidence 9987653 22 234444433333 34677777766554322222 1122221 116778
Q ss_pred cCCccCCcccccccccc
Q 042210 199 VGNLEEGTPQEGRPHEH 215 (230)
Q Consensus 199 ~g~~~~a~~i~~~~~~~ 215 (230)
.|+.++|...+....+.
T Consensus 316 ~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHHHH
Confidence 89999998888776553
No 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.40 E-value=0.0028 Score=50.34 Aligned_cols=141 Identities=6% Similarity=0.035 Sum_probs=100.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH-Hhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK-GFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~-~~~ 98 (230)
..+-..+. +.|++++|...|++.. +.+...+..+-..+.+.|++++|...|++.... .|+......... .+.
T Consensus 121 ~~~a~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 121 AQQAMQLM--QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 45556677 9999999999999875 445668888999999999999999999886543 354432222221 233
Q ss_pred hcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC---hhhhHHHHHHhhh----cchhh
Q 042210 99 RDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD---DGLHELIRIKAVD----DDLHE 162 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~---~~t~n~li~~~~~----~~~~~ 162 (230)
+.+.. +...+.... +...+..+-..|...|++++|...|.+..+ |+ ...+..+...+.. +++..
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 44444 555555554 788899999999999999999999998875 54 4467766665543 45555
Q ss_pred hHHHH
Q 042210 163 LFPEY 167 (230)
Q Consensus 163 ~~~~m 167 (230)
.+++-
T Consensus 277 ~~r~a 281 (287)
T 3qou_A 277 XYRRQ 281 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.37 E-value=0.0028 Score=48.82 Aligned_cols=138 Identities=10% Similarity=0.059 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHhc------CCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC-------CC----ChhhHHHHHHHH
Q 042210 2 HQLKQIHSQTIKLG------LLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT-------QP----SVFLWNTMIKGY 62 (230)
Q Consensus 2 ~~a~~~~~~m~~~g------~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~----~~~~yn~li~~~ 62 (230)
++|.+.++...+.. -.|+ ... ..+-..|. ..|++++|...|++.. .+ ....|..+-..|
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ--NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35666666665441 1232 223 66677888 9999999999998764 12 235688888999
Q ss_pred HhcCChhHHHHHHHHHHhC-------CCCCCcccHHHHHHHhhhcCch---------hhHHHhhhh-----hHhHHHHHH
Q 042210 63 SRIDSHKNGVLMYLDLLKS-------DVRRDNYTFPFLFKGFTRDIAG---------SLEKSCIVM-----RVFVQNALI 121 (230)
Q Consensus 63 ~~~~~~~~a~~~~~~M~~~-------g~~p~~~t~~~ll~~~~~~~~~---------a~~~~~~~~-----~~~~~~~li 121 (230)
.+.|++++|...|++..+. ...|....+-..+..+...+.. +...+.... ...++..+-
T Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 259 (283)
T 3edt_B 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLG 259 (283)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999987652 2345444444444433333322 111222221 567788899
Q ss_pred HHHHhcCCHHHHHHHHhhcc
Q 042210 122 STYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 122 ~~y~~~g~~~~A~~vf~~m~ 141 (230)
..|.+.|++++|.+.|++..
T Consensus 260 ~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999998653
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.31 E-value=0.0074 Score=46.69 Aligned_cols=147 Identities=8% Similarity=-0.009 Sum_probs=100.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC-cccHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRD-NYTFPFLF 94 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~-~~t~~~ll 94 (230)
-..-..+. +.|++++|...|++.. .|+ ...|..+-.+|.+.|++++|...|++..+.. -.|+ ...+..+-
T Consensus 19 ~~~a~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 19 FERAMEFY--NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 33445566 9999999999999976 343 4567777788999999999999999977642 1222 23455556
Q ss_pred HHhhh--------cCch--hhHHHhhhh-----hHhHH-----------------HHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 95 KGFTR--------DIAG--SLEKSCIVM-----RVFVQ-----------------NALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 95 ~~~~~--------~~~~--a~~~~~~~~-----~~~~~-----------------~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.++.. .|++ |...+.... +...+ -.+-..|.+.|++++|...|++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666 7887 888888776 33333 3456788999999999999998865
Q ss_pred --CChh----hhHHHHHHhh--------------hcchhhhHHHHHHHh
Q 042210 143 --DDDG----LHELIRIKAV--------------DDDLHELFPEYLVQM 171 (230)
Q Consensus 143 --~~~~----t~n~li~~~~--------------~~~~~~~~~~m~~~~ 171 (230)
|+.. .+..+..++. .++|.+.+++..+..
T Consensus 177 ~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 177 AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 5532 2333333332 256777777766654
No 84
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.31 E-value=0.0034 Score=42.22 Aligned_cols=82 Identities=7% Similarity=0.003 Sum_probs=44.5
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
..|++++|...|++.. +.+...|..+-..+...|++++|...+++.... .|+
T Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------- 78 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPA----------------------- 78 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--Ccc-----------------------
Confidence 5555555555555432 223344444445555555555555555443332 111
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...+..+-..|.+.|++++|.+.|++..+
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 79 ---YSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 345566666677777788888777776543
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.30 E-value=0.0063 Score=45.67 Aligned_cols=123 Identities=8% Similarity=-0.028 Sum_probs=82.8
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhhc
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTRD 100 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~~ 100 (230)
+-..|. +.|++++|...|++.. +.+...|..+-..|...|++++|...|++..+. .|+ ...|..+-..+...
T Consensus 60 lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYK--KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 556677 9999999999998865 446778888999999999999999999997663 353 44566665555544
Q ss_pred Cch----hhHHHhhhh--hH--hHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHH
Q 042210 101 IAG----SLEKSCIVM--RV--FVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELI 151 (230)
Q Consensus 101 ~~~----a~~~~~~~~--~~--~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~l 151 (230)
|.. +...+.... +. ..+..+-.++...|++++|...|++..+ |+......+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 432 333344333 22 1222233345567899999999998776 775544443
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.29 E-value=0.0029 Score=51.09 Aligned_cols=114 Identities=9% Similarity=0.001 Sum_probs=82.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCC-----hhhHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPS-----VFLWNTMIKGYS----RIDSHKNGVLMYLDLLKSDVRRDNYTFP 91 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-----~~~yn~li~~~~----~~~~~~~a~~~~~~M~~~g~~p~~~t~~ 91 (230)
...+..+. +.|+++.|.+.+++|. .|| -.+..-+..++. ..++..+|+.+|+++.+. .|+..+-.
T Consensus 140 ~l~vqi~L--~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~ 215 (310)
T 3mv2_B 140 LLAIEVAL--LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQL 215 (310)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHH
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHH
Confidence 56778888 9999999999999998 552 333334444422 234899999999998654 35544556
Q ss_pred HHHHHhhhcCch--hhHHHhhhh---------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 92 FLFKGFTRDIAG--SLEKSCIVM---------------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 92 ~ll~~~~~~~~~--a~~~~~~~~---------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+++++.+.|++ |+..++.+. +..+.-.+|..+...|+ +|.++++++.+
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 777789999999 887776432 56666556666666787 88999998875
No 87
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.28 E-value=0.0033 Score=42.31 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~ 131 (230)
...|..+-..+...|++++|...|++.... .|+ +...+..+...|...|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------------------~~~~~~~~a~~~~~~~~~~ 63 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPA--------------------------NAVYFCNRAAAYSKLGNYA 63 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------------CHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC--------------------------CHHHHHHHHHHHHHhhchH
Confidence 345666666777778888888887775542 121 3455667777888899999
Q ss_pred HHHHHHhhccC--CC-hhhhHHHHHHhhh----cchhhhHHHHHHHh
Q 042210 132 MARGIFYMSCE--DD-DGLHELIRIKAVD----DDLHELFPEYLVQM 171 (230)
Q Consensus 132 ~A~~vf~~m~~--~~-~~t~n~li~~~~~----~~~~~~~~~m~~~~ 171 (230)
+|.+.+++..+ |+ ...|..+...+.. +++.+.+++..+..
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999987764 43 4556555444443 46666776665543
No 88
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.28 E-value=0.00033 Score=57.90 Aligned_cols=177 Identities=12% Similarity=0.007 Sum_probs=121.0
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CCC-h----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHHH
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QPS-V----FLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRR-DNYTFPFLF 94 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~~-~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p-~~~t~~~ll 94 (230)
..+. ..|++++|...|++.. .|+ . ..|..+-..|...|++++|...|++..+. +-.| ....+..+-
T Consensus 56 ~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLC--NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH--HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 4556 8999999999999875 343 2 46888888999999999999999986542 2122 345677788
Q ss_pred HHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCC-----------------HHHHHHHHhhccC--
Q 042210 95 KGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGE-----------------VDMARGIFYMSCE-- 142 (230)
Q Consensus 95 ~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~-----------------~~~A~~vf~~m~~-- 142 (230)
..+...|++ |...+.... ...++..+-..|...|+ +++|.+.|++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888899998 777766655 45578888899999999 9999988876543
Q ss_pred ---CC----hhhhHHHHHHhh----hcchhhhHHHHHHHhhhcCchh----hhhhhhhcccccCCcccccccCCccCCcc
Q 042210 143 ---DD----DGLHELIRIKAV----DDDLHELFPEYLVQMLALPDTF----MGEGLEVIPKSQAPREETPRVGNLEEGTP 207 (230)
Q Consensus 143 ---~~----~~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p~~~----t~~~l~~~~~~~~~~~a~~~~g~~~~a~~ 207 (230)
++ ..+|..+-..+. .++|.+.+++..+...-.++.. .+..+.. .+...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~---------~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGN---------SHIFLGQFEDAAE 284 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HHHTTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH---------HHHHCcCHHHHHH
Confidence 22 123444433333 3567777777665442222211 2222111 6778899999988
Q ss_pred ccccccc
Q 042210 208 QEGRPHE 214 (230)
Q Consensus 208 i~~~~~~ 214 (230)
.+....+
T Consensus 285 ~~~~al~ 291 (411)
T 4a1s_A 285 HYKRTLA 291 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.27 E-value=0.0093 Score=53.47 Aligned_cols=148 Identities=7% Similarity=0.021 Sum_probs=105.1
Q ss_pred hhHH-HHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcCC-------------CC------------hh
Q 042210 2 HQLK-QIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKITQ-------------PS------------VF 53 (230)
Q Consensus 2 ~~a~-~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~~-------------~~------------~~ 53 (230)
+.|+ ++++...+ ..|.... -..+...- +.|++++|+++|+.... |. ..
T Consensus 360 ~~a~r~il~rAi~--~~P~s~~Lwl~~a~~ee--~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 360 STVITKYLKLGQQ--CIPNSAVLAFSLSEQYE--LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp TTHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 3564 78877764 3454443 56777778 99999999999988652 42 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-C-CCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKS-D-VRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTY 124 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~-g-~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y 124 (230)
.|-..+...-+.|+.+.|..+|.+-.+. + ..+......+.+.-.. .++. |+.+|+... +...|...++..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 6888888888889999999999998765 2 2233333333333222 2335 889988887 777888999999
Q ss_pred HhcCCHHHHHHHHhhccC--CC----hhhhHHHHHH
Q 042210 125 CLCGEVDMARGIFYMSCE--DD----DGLHELIRIK 154 (230)
Q Consensus 125 ~~~g~~~~A~~vf~~m~~--~~----~~t~n~li~~ 154 (230)
...|+.+.|+.+|+.... |+ ...|...+.-
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999998776 32 2457766653
No 90
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.24 E-value=0.0053 Score=41.31 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=56.6
Q ss_pred HHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCcccHHHHHHHhhhcC
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV--RRDNYTFPFLFKGFTRDI 101 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~--~p~~~t~~~ll~~~~~~~ 101 (230)
..+. ..|++++|...|++.. +.+...|..+-..|...|++++|...|++.....- .++ +..
T Consensus 12 ~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~--------- 77 (131)
T 1elr_A 12 NDAY--KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED---YRQ--------- 77 (131)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC---HHH---------
T ss_pred HHHH--HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh---HHH---------
Confidence 4444 5556666666655543 23344455555555555666666555555433210 000 000
Q ss_pred chhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHH
Q 042210 102 AGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELI 151 (230)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~l 151 (230)
....|..+-..|.+.|++++|.+.|++..+ |+...+..+
T Consensus 78 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 78 -----------IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp -----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 155677778889999999999999987764 554444433
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.19 E-value=0.0085 Score=47.48 Aligned_cols=133 Identities=8% Similarity=-0.050 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHH-HHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMI-KGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li-~~~~~~~~~~~a~~~~~ 76 (230)
++|...++...+. .|+.. . ..+-..+. +.|++++|...++... .|+........ ..+.+.++.++|...|+
T Consensus 134 ~~A~~~~~~al~~--~P~~~~a~~~la~~~~--~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 134 TDALPLLXDAWQL--SNQNGEIGLLLAETLI--ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp HHHHHHHHHHHHH--TTSCHHHHHHHHHHHH--HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCcchhHHHHHHHHHH--HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 4567777776665 46544 3 67778888 9999999999999987 46544332222 23566778888988888
Q ss_pred HHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
+..... +.+...+..+-..+...|+. |...+.... +...+..|...|...|+.++|...|++
T Consensus 210 ~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 210 QQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 865532 22456788888899999999 888888777 377899999999999999999887764
No 92
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.19 E-value=0.0016 Score=48.04 Aligned_cols=109 Identities=9% Similarity=-0.101 Sum_probs=57.6
Q ss_pred ccCChHHHHH---HHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CcccHHHHHHHhhhcCch-
Q 042210 33 EKGDLKYECK---VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK----SDVRR-DNYTFPFLFKGFTRDIAG- 103 (230)
Q Consensus 33 ~~~~~~~a~~---~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~----~g~~p-~~~t~~~ll~~~~~~~~~- 103 (230)
..|++++|.+ .+..-+......|+.+-..+...|++++|...|++... .+..| ....+..+-..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 33332222344556666666666666666666666433 12222 233455555566666666
Q ss_pred -hhHHHhhhh------------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 104 -SLEKSCIVM------------RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 104 -a~~~~~~~~------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|...+.... ....+..+-..|...|++++|.+.|++..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444433 12345556667777777777777766544
No 93
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.19 E-value=0.0049 Score=41.74 Aligned_cols=82 Identities=9% Similarity=0.078 Sum_probs=46.5
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
+.|++++|...|++.. +.+...|..+-..|...|++++|...|++..+. .|+
T Consensus 28 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~----------------------- 82 (133)
T 2lni_A 28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPT----------------------- 82 (133)
T ss_dssp HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC-----------------------
Confidence 5555555555555533 223444555555555555555555555554332 111
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...+..+-..|.+.|++++|.+.|++..+
T Consensus 83 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 83 ---FIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345566666677777888888877776643
No 94
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.18 E-value=0.0056 Score=41.46 Aligned_cols=92 Identities=7% Similarity=-0.094 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~ 131 (230)
...|..+-..+.+.|++++|...|++..+. .|+ +...+..+-..|.+.|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~--------------------------~~~~~~~la~~~~~~~~~~ 67 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK--------------------------DAKLYSNRAACYTKLLEFQ 67 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT--------------------------CHHHHHHHHHHHTTTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC--------------------------cHHHHHHHHHHHHHhccHH
Confidence 445666777777788888888887776543 222 3455667777888899999
Q ss_pred HHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHHh
Q 042210 132 MARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQM 171 (230)
Q Consensus 132 ~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~~ 171 (230)
+|.+.|++..+ | +...|..+-..+.. ++|.+.+++..+..
T Consensus 68 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 68 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999987764 4 44556655555543 45666666655443
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.18 E-value=0.0014 Score=47.60 Aligned_cols=112 Identities=9% Similarity=0.067 Sum_probs=76.9
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH-hhhcCc---h-h
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG-FTRDIA---G-S 104 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~-~~~~~~---~-a 104 (230)
..|++++|...++... +.+...|..+-..|...|++++|...|++..+.. +.+...+..+-.+ +...|+ - |
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 5667777777777643 4456778888888888888888888888865532 1134455555555 556666 3 6
Q ss_pred hHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh
Q 042210 105 LEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDD 145 (230)
Q Consensus 105 ~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~ 145 (230)
...+.... +...+..+-..|.+.|++++|...|++..+ |+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 66666665 677788888899999999999999998764 544
No 96
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.16 E-value=0.02 Score=48.68 Aligned_cols=106 Identities=18% Similarity=0.063 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHhcC-CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh----cCch-
Q 042210 34 KGDLKYECKVFRKIT-QPSVFLWNTMIKGYSR----IDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAG- 103 (230)
Q Consensus 34 ~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~----~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~----~~~~- 103 (230)
.++.++|...|+... .-+...+..+-..|.. .++.++|...|++-.+.| +...+..|-..|.+ .++.
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 445555555555433 2233334444444443 445555555555544433 23334444444443 3344
Q ss_pred -hhHHHhhhh---hHhHHHHHHHHHHh----cCCHHHHHHHHhhccC
Q 042210 104 -SLEKSCIVM---RVFVQNALISTYCL----CGEVDMARGIFYMSCE 142 (230)
Q Consensus 104 -a~~~~~~~~---~~~~~~~li~~y~~----~g~~~~A~~vf~~m~~ 142 (230)
|...+.... +...+..|-..|.. .++.++|.+.|++..+
T Consensus 205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 444444443 44455555555554 5666666666665544
No 97
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.14 E-value=0.019 Score=48.90 Aligned_cols=198 Identities=10% Similarity=-0.061 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhc----cCChHHHHHHHHhcC-CCChhhHHHHHHHHHh----cCChhHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYE----KGDLKYECKVFRKIT-QPSVFLWNTMIKGYSR----IDSHKNG 71 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~----~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~----~~~~~~a 71 (230)
++|...++...+.| ++.. ..+=..|. . .++.++|.+.|++.. ..+...+..|=..|.. .+++++|
T Consensus 60 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~--~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 60 TQAMDWFRRAAEQG---YTPAEYVLGLRYM--NGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 35666666666553 3334 44555555 6 788889988888765 4455566666666766 6788999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhh----cCch--hhHHHhhhh---hHhHHHHHHHHHHh----cCCHHHHHHHHh
Q 042210 72 VLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAG--SLEKSCIVM---RVFVQNALISTYCL----CGEVDMARGIFY 138 (230)
Q Consensus 72 ~~~~~~M~~~g~~p~~~t~~~ll~~~~~----~~~~--a~~~~~~~~---~~~~~~~li~~y~~----~g~~~~A~~vf~ 138 (230)
...|++-...| +...+..|-..|.. .++. |...+.... +...+..|-..|.+ .++.++|.+.|+
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 99998877765 33445555555555 4555 777777665 77777788888887 889999999998
Q ss_pred hccC-CChhhhHHHHHHhhh--------cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccc
Q 042210 139 MSCE-DDDGLHELIRIKAVD--------DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQE 209 (230)
Q Consensus 139 ~m~~-~~~~t~n~li~~~~~--------~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~ 209 (230)
+..+ .+..++..+-..+.. +++.+.|++..+.+. |+....-+ .+- ..+....++.++|..++
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg--~~y-----~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLG--YIL-----EQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHH--HHH-----HHTTTSSCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHH--HHH-----HCCCCCCCCHHHHHHHH
Confidence 7665 344455555444432 355555555544431 22111111 110 00222256677777776
Q ss_pred ccccccC
Q 042210 210 GRPHEHS 216 (230)
Q Consensus 210 ~~~~~~~ 216 (230)
....+.|
T Consensus 283 ~~a~~~~ 289 (490)
T 2xm6_A 283 RKSAEQG 289 (490)
T ss_dssp HHHHTTT
T ss_pred HHHHHcC
Confidence 6665543
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.14 E-value=0.0014 Score=46.76 Aligned_cols=106 Identities=10% Similarity=-0.033 Sum_probs=70.4
Q ss_pred ccCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKITQP---SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~---~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
..|++++|.+.+....+. +...+-.+=..|.+.|++++|.+.|++..+. .| +...|..+-.++.+.|++ |..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 556788888888776522 2334555667788888888888888886553 34 344666666677777777 666
Q ss_pred HHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHH-Hhhc
Q 042210 107 KSCIVM-----RVFVQNALISTYCLCGEVDMARGI-FYMS 140 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~v-f~~m 140 (230)
.+.... +...|..+-..|.+.|+.++|.+. +++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666655 566677777777777777665544 3543
No 99
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.11 E-value=0.0098 Score=39.09 Aligned_cols=30 Identities=3% Similarity=-0.119 Sum_probs=24.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...+..+-..|.+.|++++|.+.|++..+
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677777888889999999999887765
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.08 E-value=0.025 Score=42.76 Aligned_cols=141 Identities=6% Similarity=-0.041 Sum_probs=81.1
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc----cHHHHHHH
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY----TFPFLFKG 96 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~----t~~~ll~~ 96 (230)
..+. +.|++++|...|+++. .|+. ..+..+-.+|.+.|++++|...|++..+. .|+.. .+-.+-.+
T Consensus 12 ~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 12 QQKL--QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHH--HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH
T ss_pred HHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHH
Confidence 4455 7777777777777765 2332 34555666777777777777777776542 13221 12222222
Q ss_pred hhh------------------cCch--hhHHHhhhh-----hHhHH-----------------HHHHHHHHhcCCHHHHH
Q 042210 97 FTR------------------DIAG--SLEKSCIVM-----RVFVQ-----------------NALISTYCLCGEVDMAR 134 (230)
Q Consensus 97 ~~~------------------~~~~--a~~~~~~~~-----~~~~~-----------------~~li~~y~~~g~~~~A~ 134 (230)
+.+ .|+. |...++.+. +...+ -.+-..|.+.|++++|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 221 3444 666666555 22222 23445788999999999
Q ss_pred HHHhhccC--CChh----hhHHHHHHhhh----cchhhhHHHHHHHh
Q 042210 135 GIFYMSCE--DDDG----LHELIRIKAVD----DDLHELFPEYLVQM 171 (230)
Q Consensus 135 ~vf~~m~~--~~~~----t~n~li~~~~~----~~~~~~~~~m~~~~ 171 (230)
..|++..+ |+.. .+..+..++.. ++|.+.++.+....
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99998875 6543 34444444443 46666666655544
No 101
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.07 E-value=0.0019 Score=53.14 Aligned_cols=202 Identities=6% Similarity=-0.042 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHhcC-CCCC----cH-HHHHHHHhhhccCChHHHHHHHHhcC-----CCC-----hhhHHHHHHHHHhc
Q 042210 2 HQLKQIHSQTIKLGL-LTKP----HC-PKQTRYLLLYEKGDLKYECKVFRKIT-----QPS-----VFLWNTMIKGYSRI 65 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~-~~~~----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~-----~~~yn~li~~~~~~ 65 (230)
++|...++...+.-- .++. .+ ..+-..|. ..|+.++|...+++.. .++ ..+++.+-..|...
T Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 197 (383)
T 3ulq_A 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY--YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197 (383)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence 355666666554311 1222 23 44556666 8899998888887754 222 24677777888888
Q ss_pred CChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhc
Q 042210 66 DSHKNGVLMYLDLLKS----DVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLC 127 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~~----g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~ 127 (230)
|++++|...|++..+. +-.+ ...++..+-..|...|+. |...+.... ...++..+-..|.+.
T Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 9999999998886542 1111 123677777788888888 666665554 345677788889999
Q ss_pred CCHHHHHHHHhhccC-----CChh---hhHHHHHHhhhcch---hhhHHHHHHHhhhcCchh-hhhhhhhcccccCCccc
Q 042210 128 GEVDMARGIFYMSCE-----DDDG---LHELIRIKAVDDDL---HELFPEYLVQMLALPDTF-MGEGLEVIPKSQAPREE 195 (230)
Q Consensus 128 g~~~~A~~vf~~m~~-----~~~~---t~n~li~~~~~~~~---~~~~~~m~~~~~~~p~~~-t~~~l~~~~~~~~~~~a 195 (230)
|++++|...|++..+ .|.. .++.+-..+...+. .+..-...+.....|+.. .+.. + -..
T Consensus 278 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~---l------a~~ 348 (383)
T 3ulq_A 278 GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID---V------AKY 348 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH---H------HHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH---H------HHH
Confidence 999999988886553 2221 22333333333222 122222222221222221 2222 1 116
Q ss_pred ccccCCccCCccccccccc
Q 042210 196 TPRVGNLEEGTPQEGRPHE 214 (230)
Q Consensus 196 ~~~~g~~~~a~~i~~~~~~ 214 (230)
+.+.|+.++|...+....+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7788999999888876655
No 102
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.06 E-value=0.0057 Score=49.78 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=51.4
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC--CCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT--QPS----------------VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~--~~~----------------~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
.+-..|. +.|++++|...|++.. .|+ ...|..+-.+|.+.|++++|...|++..+. .|
T Consensus 152 ~~g~~~~--~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 227 (336)
T 1p5q_A 152 ERGTVYF--KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DS 227 (336)
T ss_dssp HHHHHHH--HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHH--HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 3344555 6777777777776654 232 256666666666677777777776665442 12
Q ss_pred CcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 86 DNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 86 ~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+ +...|..+-.+|.+.|++++|...|++..
T Consensus 228 ~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 228 N--------------------------NEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp T--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C--------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 34444555555666666666666666554
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.05 E-value=0.018 Score=45.45 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=83.4
Q ss_pred HHHHhhhccCChHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCc----ccHH
Q 042210 26 TRYLLLYEKGDLKYECKVFRKITQ-----PSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-RDN----YTFP 91 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m~~-----~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~-p~~----~t~~ 91 (230)
+..+. +.|++++|...+++... |+. ..|..+-..+...+++++|...|++....... ++. ..|+
T Consensus 82 i~~~~--~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLC--KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHH--HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 56667 88999999999988652 221 12344656666678999999999998774333 232 2577
Q ss_pred HHHHHhhhcCch--hhHHHhhhh------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 92 FLFKGFTRDIAG--SLEKSCIVM------------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 92 ~ll~~~~~~~~~--a~~~~~~~~------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.+-..|...|++ |...+.... ...+|..+-..|.+.|++++|...+++..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888 666666654 344778888899999999999998886553
No 104
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.0061 Score=51.19 Aligned_cols=94 Identities=13% Similarity=-0.087 Sum_probs=54.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh-hhhHHHHHHhh-----------------------hcchhhhHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDD-GLHELIRIKAV-----------------------DDDLHELFPE 166 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~-~t~n~li~~~~-----------------------~~~~~~~~~~ 166 (230)
+...+..+-..|.+.|++++|...|++..+ |+. .+|+.+-..|. .+++.+.+++
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 566677778888888888888888887654 543 34444322221 1233333333
Q ss_pred HHHHhhhcCc-hhhhhhhhhcccccCCcccccccCCccCCccccccccccCCC
Q 042210 167 YLVQMLALPD-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQD 218 (230)
Q Consensus 167 m~~~~~~~p~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~~ 218 (230)
.... .|+ ..++..+.. .+.+.|++++|...+..+.+....
T Consensus 326 a~~~---~~~~~~~~~~lg~---------~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 326 ADEA---NDNLFRVCSILAS---------LHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHH---CTTTCCCHHHHHH---------HHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred Hhhc---CCchhhhhhhHHH---------HHHHhccHHHHHHHHHHHHhcCCC
Confidence 3322 233 222222112 567889999998888877665443
No 105
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.97 E-value=0.0021 Score=47.78 Aligned_cols=147 Identities=8% Similarity=0.000 Sum_probs=83.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC------------
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD-VRRD------------ 86 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~------------ 86 (230)
+....+.. ..|+++++.+.|+.-. ......|..+-..+.+.|++++|...|++..+.. -.|+
T Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 8 HHHSSGRE--NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cchhhhhh--hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 34444455 6667777777665433 1233456667777888999999999999876532 1221
Q ss_pred --cccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHHHHHH
Q 042210 87 --NYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGLHELIRIK 154 (230)
Q Consensus 87 --~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~li~~ 154 (230)
...|..+-.++.+.|++ |...+.... +...+..+-..|.+.|++++|.+.|++..+ |+ ...+..+-..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 15677777788888888 777777766 677888888999999999999999998754 54 3445544333
Q ss_pred hhh----cch-hhhHHHHHHHh
Q 042210 155 AVD----DDL-HELFPEYLVQM 171 (230)
Q Consensus 155 ~~~----~~~-~~~~~~m~~~~ 171 (230)
+.. .++ ...+..|+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 321 222 24555555554
No 106
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.94 E-value=0.045 Score=43.23 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=28.8
Q ss_pred HHHHHHhhhcc-CChHHHHHHHHhcC-----CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 24 KQTRYLLLYEK-GDLKYECKVFRKIT-----QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 24 ~ll~~~~~~~~-~~~~~a~~~~~~m~-----~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
.+-..|. +. |++++|...|++.. ..+ ..+|+.+-..|.+.|++++|...|++....
T Consensus 122 ~lg~~~~--~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 122 ELGEILE--NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444444 53 66666666655533 111 123555555556666666666666655443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.93 E-value=0.0083 Score=44.58 Aligned_cols=84 Identities=6% Similarity=-0.228 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhc
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLC 127 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~ 127 (230)
+..+-..+...|++++|...|++. +.|+...|..+-..+.+.|++ |...+.... +...|..+-..|.+.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 444556777899999999999876 467888899999999999999 888887776 678889999999999
Q ss_pred CCHHHHHHHHhhccC
Q 042210 128 GEVDMARGIFYMSCE 142 (230)
Q Consensus 128 g~~~~A~~vf~~m~~ 142 (230)
|++++|...|++..+
T Consensus 85 ~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 85 EKYDLAIKDLKEALI 99 (213)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999998764
No 108
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.93 E-value=0.019 Score=47.00 Aligned_cols=145 Identities=7% Similarity=-0.092 Sum_probs=102.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCcc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DV-RRDNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~-~p~~~ 88 (230)
+.+-..|. ..|++++|...|++.. .++. .+|+.+=..|...|++++|...|++-.+. +- +....
T Consensus 188 ~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 188 SLFATNFL--DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 55557777 9999999999998764 2222 36788888899999999999999986651 33 33455
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh----------hHhHHHHHHHHHHhcCC---HHHHHHHHhhccCC-Ch-hhhHHH
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM----------RVFVQNALISTYCLCGE---VDMARGIFYMSCED-DD-GLHELI 151 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~----------~~~~~~~li~~y~~~g~---~~~A~~vf~~m~~~-~~-~t~n~l 151 (230)
++..+-..+.+.|+. |...+.... ....++.+-..|.+.|+ +++|..++++...+ +. ..+..+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 345 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 788888899999998 777777665 23335667788888999 89999999988542 22 233334
Q ss_pred HHHhhh----cchhhhHHHHHH
Q 042210 152 RIKAVD----DDLHELFPEYLV 169 (230)
Q Consensus 152 i~~~~~----~~~~~~~~~m~~ 169 (230)
-..+.. ++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 344443 456666665544
No 109
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.92 E-value=0.014 Score=40.00 Aligned_cols=88 Identities=7% Similarity=-0.150 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHh
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCL 126 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~ 126 (230)
.|..+-..+...|++++|...|++..... +.+...|..+-.++...|++ |...+.... +...|..+-..|.+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 33334444444444444444444433221 01222333333444444444 333333333 45667777788888
Q ss_pred cCCHHHHHHHHhhccC
Q 042210 127 CGEVDMARGIFYMSCE 142 (230)
Q Consensus 127 ~g~~~~A~~vf~~m~~ 142 (230)
.|++++|...|++..+
T Consensus 90 ~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 90 MESYDEAIANLQRAYS 105 (137)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888888887654
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.91 E-value=0.012 Score=45.45 Aligned_cols=138 Identities=6% Similarity=-0.033 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHhcCCCCC----cH-HHHHHHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHh------
Q 042210 2 HQLKQIHSQTIKLGLLTKP----HC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSR------ 64 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~------ 64 (230)
++|...|+...+.. |+. .. ..+-..|. +.|++++|...|+... .|+ ...|..+-.++.+
T Consensus 32 ~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 32 DRAIEYFKAVFTYG--RTHEWAADAQFYLARAYY--QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp HHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 46778888776653 443 23 44556677 9999999999999875 332 2345566667777
Q ss_pred --cCChhHHHHHHHHHHhCCCCCCc-ccH-----------------HHHHHHhhhcCch--hhHHHhhhh--------hH
Q 042210 65 --IDSHKNGVLMYLDLLKSDVRRDN-YTF-----------------PFLFKGFTRDIAG--SLEKSCIVM--------RV 114 (230)
Q Consensus 65 --~~~~~~a~~~~~~M~~~g~~p~~-~t~-----------------~~ll~~~~~~~~~--a~~~~~~~~--------~~ 114 (230)
.|++++|...|++..+.. |+. ... -.+-..+.+.|++ |...++... ..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 185 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWAD 185 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred ccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHH
Confidence 899999999999977642 432 233 3346678888998 888888776 23
Q ss_pred hHHHHHHHHHHhc----------CCHHHHHHHHhhccC--CCh
Q 042210 115 FVQNALISTYCLC----------GEVDMARGIFYMSCE--DDD 145 (230)
Q Consensus 115 ~~~~~li~~y~~~----------g~~~~A~~vf~~m~~--~~~ 145 (230)
..+..+-..|.+. |++++|...|++..+ |+.
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 4666777788766 899999999998875 655
No 111
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.025 Score=38.97 Aligned_cols=89 Identities=8% Similarity=-0.140 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----cccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD----NYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNAL 120 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~----~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~l 120 (230)
...|..+-..+.+.|++++|...|++..+. .|+ ...|..+-.++...|++ |...+.... +...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344555555555666666666666655442 233 33444444555555555 444444443 45566677
Q ss_pred HHHHHhcCCHHHHHHHHhhccC
Q 042210 121 ISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~ 142 (230)
-..|.+.|++++|.+.|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888887654
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.87 E-value=0.0035 Score=51.48 Aligned_cols=138 Identities=10% Similarity=-0.017 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHhcC-CCCC----cH-HHHHHHHhhhccCChHHHHHHHHhcC-----CCC-----hhhHHHHHHHHHhc
Q 042210 2 HQLKQIHSQTIKLGL-LTKP----HC-PKQTRYLLLYEKGDLKYECKVFRKIT-----QPS-----VFLWNTMIKGYSRI 65 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~-~~~~----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~-----~~~yn~li~~~~~~ 65 (230)
++|...++...+.-- .++. .+ ..+-..|. ..|+++.|...+++.. .++ ..+++.+=..|...
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY--HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 356666666554421 1221 12 44556677 8899999888887753 122 34677788888889
Q ss_pred CChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh----------hHhHHHHHHHHHHhcC
Q 042210 66 DSHKNGVLMYLDLLKS----DVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM----------RVFVQNALISTYCLCG 128 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~~----g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~----------~~~~~~~li~~y~~~g 128 (230)
|++++|...|++-.+. +-.+ ...++..+-..+...|+. |...+.... ...++..+-..|.+.|
T Consensus 196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 275 (378)
T 3q15_A 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence 9999999999885442 2111 223566677778888888 666666554 4556777888899999
Q ss_pred CHHHHHHHHhhcc
Q 042210 129 EVDMARGIFYMSC 141 (230)
Q Consensus 129 ~~~~A~~vf~~m~ 141 (230)
+.++|...|++..
T Consensus 276 ~~~~A~~~~~~al 288 (378)
T 3q15_A 276 QTQKAFQFIEEGL 288 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988654
No 113
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.85 E-value=0.0078 Score=41.92 Aligned_cols=115 Identities=10% Similarity=-0.017 Sum_probs=67.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-Ccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRR-DNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p-~~~ 88 (230)
..+-..+. ..|++++|...+++.. .++. ..+..+-..+...|++++|...+++.... +-.+ ...
T Consensus 13 ~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 13 GNLGNTHY--LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34445566 8888888888887754 1221 36777777888888999998888875432 1111 122
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
.+..+-..+...|++ |...+.... ....+..+-..|...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344444555555555 444444333 233445555556666666666665554
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.80 E-value=0.016 Score=42.44 Aligned_cols=118 Identities=4% Similarity=-0.217 Sum_probs=86.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCC---------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC--Cc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQ---------PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRR--DN 87 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p--~~ 87 (230)
..+-..+. ..|++++|...+++... .....++.+-..|...|++++|...|++-.+. +-.| ..
T Consensus 30 ~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 30 FMLGYVYA--FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHH--HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 55667777 99999999999987641 12346777888889999999999999886442 2111 13
Q ss_pred ccHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 88 YTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 88 ~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
..+..+-..+...|++ |...+.... ...++..+-..|.+.|++++|.+.|++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3466677788888888 766666654 233457778889999999999999987544
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.78 E-value=0.0079 Score=39.21 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=60.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. +.|++++|...|++.. +.+...|..+-..+.+.|++++|...|++..+.. |+.
T Consensus 10 ~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~------------ 73 (112)
T 2kck_A 10 YLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDE------------ 73 (112)
T ss_dssp GGHHHHHH--SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCT------------
T ss_pred HHHHHHHH--HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccc------------
Confidence 55556667 8888888888887754 4455667777777778888888888887766542 220
Q ss_pred cCchhhHHHhhhhhHhHHHHHHHHHHhc-CCHHHHHHHHhhccC
Q 042210 100 DIAGSLEKSCIVMRVFVQNALISTYCLC-GEVDMARGIFYMSCE 142 (230)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~li~~y~~~-g~~~~A~~vf~~m~~ 142 (230)
. +...+..+-..|.+. |++++|.+.|++...
T Consensus 74 ---~---------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 74 ---Y---------NKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp ---T---------CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred ---c---------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 0 234455556666667 777777777766554
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.77 E-value=0.014 Score=41.36 Aligned_cols=87 Identities=9% Similarity=-0.051 Sum_probs=46.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCC
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGE 129 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~ 129 (230)
+-..+.+.|++++|...|++.... .| +...|..+-.+|...|++ |...++... +...|..+-..|...|+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 333444444444444444443321 11 222333333444444444 444444333 45666777778888899
Q ss_pred HHHHHHHHhhccC--CChh
Q 042210 130 VDMARGIFYMSCE--DDDG 146 (230)
Q Consensus 130 ~~~A~~vf~~m~~--~~~~ 146 (230)
+++|.+.|+...+ |+..
T Consensus 105 ~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHCcCCC
Confidence 9999988887654 5443
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.76 E-value=0.016 Score=39.85 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=49.0
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
+.|++++|.+.|++.. +.+...|..+-.+|.+.|++++|...|++-.+. .|+
T Consensus 25 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~----------------------- 79 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSK----------------------- 79 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhh-----------------------
Confidence 5555555555555532 334445555555555555555555555543321 111
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...|..+-..|.+.|++++|.+.|++..+
T Consensus 80 ---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 80 ---FIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677777788888888888888887654
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.75 E-value=0.011 Score=41.24 Aligned_cols=80 Identities=13% Similarity=-0.051 Sum_probs=42.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHH
Q 042210 61 GYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDM 132 (230)
Q Consensus 61 ~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~ 132 (230)
.+.+.|++++|...|++.... .| +...|..+-.++.+.|++ |...++... +...+..+-..|...|++++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence 334444444444444443321 11 222333333344444444 444443333 45566777778888899999
Q ss_pred HHHHHhhccC
Q 042210 133 ARGIFYMSCE 142 (230)
Q Consensus 133 A~~vf~~m~~ 142 (230)
|.+.|+...+
T Consensus 105 A~~~~~~al~ 114 (142)
T 2xcb_A 105 AESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.75 E-value=0.011 Score=42.46 Aligned_cols=90 Identities=6% Similarity=-0.146 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYC 125 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~ 125 (230)
.|..+=..+.+.|++++|...|++.... .| +...|..+=.++.+.|++ |...++... +...|..+-.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3444444555556666666666554432 12 233444455555555555 555554444 5667777778888
Q ss_pred hcCCHHHHHHHHhhccC--CCh
Q 042210 126 LCGEVDMARGIFYMSCE--DDD 145 (230)
Q Consensus 126 ~~g~~~~A~~vf~~m~~--~~~ 145 (230)
+.|++++|...|++..+ ||.
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888888887654 544
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.71 E-value=0.045 Score=38.41 Aligned_cols=90 Identities=9% Similarity=-0.071 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A 133 (230)
.|..+-..+...|++++|...|++..+. .|+ +...+..+-..|.+.|++++|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~--------------------------~~~~~~~~a~~~~~~~~~~~A 66 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPS--------------------------NAIYYGNRSLAYLRTECYGYA 66 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT--------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC--------------------------ChHHHHHHHHHHHHcCCHHHH
Confidence 3555566666777777777777765442 121 355667777788889999999
Q ss_pred HHHHhhccC--C-ChhhhHHHHHHhh----hcchhhhHHHHHHHh
Q 042210 134 RGIFYMSCE--D-DDGLHELIRIKAV----DDDLHELFPEYLVQM 171 (230)
Q Consensus 134 ~~vf~~m~~--~-~~~t~n~li~~~~----~~~~~~~~~~m~~~~ 171 (230)
.+.|++..+ | +...|..+-..+. .++|.+.+++..+..
T Consensus 67 ~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 67 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999987664 4 4445555544443 346666666665543
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.70 E-value=0.014 Score=43.78 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=97.6
Q ss_pred ccCChHHHHHHHHhcC--CCC-hhhHHH----------------HHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHH
Q 042210 33 EKGDLKYECKVFRKIT--QPS-VFLWNT----------------MIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPF 92 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~-~~~yn~----------------li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ 92 (230)
+.|++++|...|++.. .|+ ...|.. +-..|.+.|++++|...|++..+. .| +...|..
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 93 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEA 93 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 8999999999999875 343 344555 777888999999999999997663 34 4567788
Q ss_pred HHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCC--HHHHHHHHhhccCCChhhhHHHHH------Hhhh
Q 042210 93 LFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGE--VDMARGIFYMSCEDDDGLHELIRI------KAVD 157 (230)
Q Consensus 93 ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~--~~~A~~vf~~m~~~~~~t~n~li~------~~~~ 157 (230)
+-..+...|++ |...++... +...|..+-..|...|+ .+.+...+.....|+...|...-. ....
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~ 173 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY 173 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH
Confidence 88889999999 888888877 67788888888766654 455667777776666543322211 1223
Q ss_pred cchhhhHHHHHHHhhhcCchhhhhh
Q 042210 158 DDLHELFPEYLVQMLALPDTFMGEG 182 (230)
Q Consensus 158 ~~~~~~~~~m~~~~~~~p~~~t~~~ 182 (230)
++|.+.|++..+ ..|+......
T Consensus 174 ~~A~~~~~~al~---l~P~~~~~~~ 195 (208)
T 3urz_A 174 EKARNSLQKVIL---RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHTT---TSCCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCHHHHHH
Confidence 456666665443 3466443333
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.67 E-value=0.025 Score=36.66 Aligned_cols=76 Identities=7% Similarity=0.099 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CC--ChhhHHHHHHHHHhc-CChhHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QP--SVFLWNTMIKGYSRI-DSHKNGVL 73 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~--~~~~yn~li~~~~~~-~~~~~a~~ 73 (230)
++|...++...+.. |+ ... ..+-..+. +.|++++|...|++.. .. +...|..+-..+.+. |++++|.+
T Consensus 23 ~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 23 TESIDLFEKAIQLD--PEESKYWLMKGKALY--NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred HHHHHHHHHHHHhC--cCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778888877763 43 334 66777888 9999999999999865 33 577889999999999 99999999
Q ss_pred HHHHHHhC
Q 042210 74 MYLDLLKS 81 (230)
Q Consensus 74 ~~~~M~~~ 81 (230)
.|++....
T Consensus 99 ~~~~~~~~ 106 (112)
T 2kck_A 99 AEARAKLE 106 (112)
T ss_dssp HHHHHGGG
T ss_pred HHHHHhhc
Confidence 99997664
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.66 E-value=0.015 Score=41.49 Aligned_cols=87 Identities=7% Similarity=-0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhc
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLC 127 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~ 127 (230)
|..+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++ |...+.... +...|..+-..|.+.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444455555555554433321 01233344444444444544 444444433 567778888899999
Q ss_pred CCHHHHHHHHhhccC
Q 042210 128 GEVDMARGIFYMSCE 142 (230)
Q Consensus 128 g~~~~A~~vf~~m~~ 142 (230)
|++++|.+.|++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998765
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.63 E-value=0.016 Score=42.08 Aligned_cols=131 Identities=10% Similarity=-0.000 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHH-HHhcCChhHHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKG-YSRIDSHKNGVLMYLD 77 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~-~~~~~~~~~a~~~~~~ 77 (230)
+|...++...+. .|+.. . ..+-..+. +.|++++|...|+... .|+...+...-.. +...+...+|...|++
T Consensus 24 ~A~~~~~~al~~--~P~~~~a~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (176)
T 2r5s_A 24 QALNVIQTLSDE--LQSRGDVKLAKADCLL--ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQ 99 (176)
T ss_dssp HHHHHHHTSCHH--HHTSHHHHHHHHHHHH--HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 445555544332 35443 3 66777888 9999999999999986 4444333222111 2222333456777877
Q ss_pred HHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-------hHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 78 LLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------RVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 78 M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
..+ ..| +...+..+-..+...|+. |...+.... +...+..+...|...|+.++|...|++
T Consensus 100 al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 100 ELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 654 335 456778888899999999 888888776 245889999999999999999988875
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.60 E-value=0.054 Score=42.65 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=85.2
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC-----CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHh----C-CCCCC-ccc
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT-----QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLK----S-DVRRD-NYT 89 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~----~-g~~p~-~~t 89 (230)
+-..+. ..++.++|...|++.. .++. ..|+.+-..|...|++++|...|++..+ . +-.|. ..+
T Consensus 121 l~~~~~--~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 121 VAAYVL--KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHT--TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHH--cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 445555 7889999999998764 2332 2688898999999999999999999764 1 22222 236
Q ss_pred HHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCC-HHHHHHHHhhc
Q 042210 90 FPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGE-VDMARGIFYMS 140 (230)
Q Consensus 90 ~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~-~~~A~~vf~~m 140 (230)
|..+-..|.+.|+. |...+.... -..+|..+=..|.+.|+ .++|.+.|++.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 77888889999998 777776665 25678888888999994 68888777754
No 126
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.11 Score=43.39 Aligned_cols=202 Identities=13% Similarity=-0.045 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHh--hhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLL--LYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLM 74 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~--~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~ 74 (230)
++|.+.++...+. .|+... ..+-..+. .-..++.++|.+.+++.. +.+...|+.+-..|.+.|++++|...
T Consensus 192 ~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 192 QNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 3566667766655 355443 33333333 004467888999988754 45567788888899999999999999
Q ss_pred HHHHHhCCCCCCc-ccHHHHHHHhhhc-------------------Cch--hhHHHhhhh-----hHhHHHHHHHHHHhc
Q 042210 75 YLDLLKSDVRRDN-YTFPFLFKGFTRD-------------------IAG--SLEKSCIVM-----RVFVQNALISTYCLC 127 (230)
Q Consensus 75 ~~~M~~~g~~p~~-~t~~~ll~~~~~~-------------------~~~--a~~~~~~~~-----~~~~~~~li~~y~~~ 127 (230)
|++..+. .|+. ..+..+-.+|... +.. +...+.... +...+..+-..|.+.
T Consensus 270 ~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 270 LKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 9886653 3443 3444443333211 011 444444443 567788888999999
Q ss_pred CCHHHHHHHHhhccC--CChhh----hHHHHH--Hhh---hcchhhhHHHHHHH--------------------h-hhcC
Q 042210 128 GEVDMARGIFYMSCE--DDDGL----HELIRI--KAV---DDDLHELFPEYLVQ--------------------M-LALP 175 (230)
Q Consensus 128 g~~~~A~~vf~~m~~--~~~~t----~n~li~--~~~---~~~~~~~~~~m~~~--------------------~-~~~p 175 (230)
|++++|...|++..+ |+... +..+.. .+. .++|++.+++..+- . ...|
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p 427 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG 427 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999987643 33221 111111 011 13455544443221 1 1123
Q ss_pred c-hhhhhhhhhcccccCCcccccccCCccCCccccccccccC
Q 042210 176 D-TFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHS 216 (230)
Q Consensus 176 ~-~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~ 216 (230)
+ ..++..|.. .+...|+.++|.+.++...+.|
T Consensus 428 ~~~~~~~~LG~---------~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 428 ADSEALHVLAF---------LQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp -CTTHHHHHHH---------HHHHHHHCC-------------
T ss_pred CCHHHHHHHHH---------HHHHcCCHHHHHHHHHHHHhcC
Confidence 3 334444333 5678899999999999888764
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.59 E-value=0.14 Score=38.24 Aligned_cols=160 Identities=9% Similarity=-0.093 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC-CCChhhHHHHHHHHHhcC----ChhHHHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT-QPSVFLWNTMIKGYSRID----SHKNGVLMYL 76 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~~~----~~~~a~~~~~ 76 (230)
+|.+.|....+.| ++.. ..+=..|. ..++.++|...|++.- .-+...+..+=..|.. + ++++|...|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~--~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWV--SSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 5667777777664 5555 66777788 8999999999999876 4455666666666766 6 8999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhh----cCch--hhHHHhhhh---h----HhHHHHHHHHHHh----cCCHHHHHHHHhh
Q 042210 77 DLLKSDVRRDNYTFPFLFKGFTR----DIAG--SLEKSCIVM---R----VFVQNALISTYCL----CGEVDMARGIFYM 139 (230)
Q Consensus 77 ~M~~~g~~p~~~t~~~ll~~~~~----~~~~--a~~~~~~~~---~----~~~~~~li~~y~~----~g~~~~A~~vf~~ 139 (230)
+-.+.| +...+..|=..|.. .++. |...+.... + ...+..|=..|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 987765 33455556556655 5566 888887776 4 7888888888888 8899999999998
Q ss_pred ccC--CChhhhHHHHHHhh----------hcchhhhHHHHHHHh
Q 042210 140 SCE--DDDGLHELIRIKAV----------DDDLHELFPEYLVQM 171 (230)
Q Consensus 140 m~~--~~~~t~n~li~~~~----------~~~~~~~~~~m~~~~ 171 (230)
-.+ ++...+..|-..|. .++|.+.+++-.+.|
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 754 45555555544332 245666666666655
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.029 Score=37.87 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=46.0
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHh
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~ 109 (230)
+.|++++|...|++.. +.+...|..+-.+|.+.|++++|...|++..+. .|+
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~----------------------- 70 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPN----------------------- 70 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------------------
Confidence 5555555555555433 233444555555555555555555555553332 121
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+...|..+-..|.+.|++++|...|++..
T Consensus 71 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 71 ---FVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 35556666777778888888888777654
No 129
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.57 E-value=0.099 Score=39.38 Aligned_cols=135 Identities=7% Similarity=-0.078 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhcCCCCC----cH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChh----hHHHHHHHHHh------
Q 042210 2 HQLKQIHSQTIKLGLLTKP----HC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVF----LWNTMIKGYSR------ 64 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~----~yn~li~~~~~------ 64 (230)
++|...|+.+.+.. |+. .. ..+-.+|. +.|++++|...|+... .|+.. .|-.+-.++.+
T Consensus 21 ~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~--~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 21 RQAITQLEALDNRY--PFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 56888888888763 332 23 44556777 9999999999999875 34322 22223233332
Q ss_pred ------------cCChhHHHHHHHHHHhCCCCCCcc-cHH-----------------HHHHHhhhcCch--hhHHHhhhh
Q 042210 65 ------------IDSHKNGVLMYLDLLKSDVRRDNY-TFP-----------------FLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 65 ------------~~~~~~a~~~~~~M~~~g~~p~~~-t~~-----------------~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
.|++++|...|++..+. -|+.. .+. .+-..+.+.|++ |...++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 174 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGML 174 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 47899999999998764 24433 221 233456677887 777777776
Q ss_pred -----h---HhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 -----R---VFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 -----~---~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+ ...+..+..+|.+.|+.++|.+.|+.+..
T Consensus 175 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 175 RDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 2 35677889999999999999999997764
No 130
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.56 E-value=0.03 Score=44.30 Aligned_cols=118 Identities=11% Similarity=-0.061 Sum_probs=73.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-------CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-Ccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-------QPS--VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRR-DNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~~--~~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p-~~~ 88 (230)
......|. ..|++++|.+.|.+.. .|. ..+|+.+-..|.+.|++++|...|++-... |-.+ -..
T Consensus 41 ~~a~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 41 VQAATIYR--LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHH--HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33455667 7777777777776543 111 346777777777777888777777764331 1111 123
Q ss_pred cHHHHHHHhhhc-Cch--hhHHHhhhh-----h------HhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 89 TFPFLFKGFTRD-IAG--SLEKSCIVM-----R------VFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 89 t~~~ll~~~~~~-~~~--a~~~~~~~~-----~------~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
++..+-..|... |++ |...+.... + ..+++.+-..|.+.|++++|...|++..+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777774 777 666665554 0 34566777777888888888887776553
No 131
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.49 E-value=0.041 Score=38.88 Aligned_cols=103 Identities=8% Similarity=-0.106 Sum_probs=78.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~ 98 (230)
-.+-..|. +.|++++|.+.|++.. +.+...|..+-..|.+.|++++|...|++..+. .| +...|..+-..+.
T Consensus 35 ~~la~~y~--~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 35 FYFAKLYY--EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34557788 9999999999999865 456778999999999999999999999997663 45 3457778888888
Q ss_pred hcCch--hhH-HHhhhh-----hHhHHHHHHHHHHhcCC
Q 042210 99 RDIAG--SLE-KSCIVM-----RVFVQNALISTYCLCGE 129 (230)
Q Consensus 99 ~~~~~--a~~-~~~~~~-----~~~~~~~li~~y~~~g~ 129 (230)
+.|+. +.. .++... ++.+|+..-..+.+.|+
T Consensus 111 ~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 111 KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88887 443 345443 67777776666665553
No 132
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.041 Score=35.91 Aligned_cols=87 Identities=5% Similarity=-0.063 Sum_probs=64.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. ..|++++|...|+... +.+...|..+-..+.+.|++++|...+++..+.. +.+...+..+-.++..
T Consensus 8 ~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 8 KEKGNKAL--SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 44556667 8899999999998864 4466778888888888899999999998876542 1245567777788888
Q ss_pred cCch--hhHHHhhhh
Q 042210 100 DIAG--SLEKSCIVM 112 (230)
Q Consensus 100 ~~~~--a~~~~~~~~ 112 (230)
.|++ |...+....
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 8888 777776655
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.41 E-value=0.028 Score=44.69 Aligned_cols=117 Identities=5% Similarity=-0.180 Sum_probs=77.0
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHhhhc
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD--NYTFPFLFKGFTRD 100 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~--~~t~~~ll~~~~~~ 100 (230)
....+. ..|++++|.++|+.+. .|+....-.+-..+.+.+++++|+..|+...... .|. ...+..+=.++.+.
T Consensus 108 yA~~L~--~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEA--AQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHH--HHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--HCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 445566 8999999999999987 4543344444457888999999999997443321 111 12344555667777
Q ss_pred Cch--hhHHHhhhh--h------HhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC
Q 042210 101 IAG--SLEKSCIVM--R------VFVQNALISTYCLCGEVDMARGIFYMSCE--DD 144 (230)
Q Consensus 101 ~~~--a~~~~~~~~--~------~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~ 144 (230)
|++ |...++... + .......-.++.+.|+.++|..+|+++.. |+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 777 777777664 1 12334445566777888888888887764 55
No 134
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.39 E-value=0.14 Score=49.46 Aligned_cols=142 Identities=10% Similarity=0.002 Sum_probs=77.5
Q ss_pred CCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042210 18 TKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKG 96 (230)
Q Consensus 18 ~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~ 96 (230)
+++.. +.+.-+|+ +.+++++...+. ..++...|..+=..|-..|++++|..+|... ..|..+...
T Consensus 1165 ~e~~Idt~LafaYA--Kl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~t 1230 (1630)
T 1xi4_A 1165 RESYVETELIFALA--KTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 1230 (1630)
T ss_pred ccccccHHHHHHHH--hhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHH
Confidence 44444 55556666 666665444332 2334444444444555555555555555542 245555555
Q ss_pred hhhcCch--hhHHHhhhh------------------------------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--
Q 042210 97 FTRDIAG--SLEKSCIVM------------------------------RVFVQNALISTYCLCGEVDMARGIFYMSCE-- 142 (230)
Q Consensus 97 ~~~~~~~--a~~~~~~~~------------------------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~-- 142 (230)
+.+.|++ |.+.++... +...+..++..|.+.|.+++|.++++.--.
T Consensus 1231 LvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 5555555 333333332 444566788889999999999999976544
Q ss_pred -CChhhhHHHHHHhh---hcchhhhHHHHHHHhhh
Q 042210 143 -DDDGLHELIRIKAV---DDDLHELFPEYLVQMLA 173 (230)
Q Consensus 143 -~~~~t~n~li~~~~---~~~~~~~~~~m~~~~~~ 173 (230)
.....|+-+-..+. -++..+-.+-....+++
T Consensus 1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 23345555544443 34444444444456643
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.36 E-value=0.077 Score=41.74 Aligned_cols=116 Identities=9% Similarity=-0.073 Sum_probs=82.6
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC--CCC-h------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----ccc
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT--QPS-V------FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-RD----NYT 89 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~--~~~-~------~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~-p~----~~t 89 (230)
..+..+. ..|+.++|.+.+.+.. .+. . ..+..+-..+...|++++|...|++....... .+ ..+
T Consensus 80 ~~~~~~~--~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 80 DQVIMLC--KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHH--HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3455667 8899999999887643 121 1 12334445567778999999999987653221 12 336
Q ss_pred HHHHHHHhhhcCch--hhHHHhhhh------------hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 90 FPFLFKGFTRDIAG--SLEKSCIVM------------RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 90 ~~~ll~~~~~~~~~--a~~~~~~~~------------~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|+.+-..|...|++ |...+.... ...+++.+-..|.+.|++++|...|++..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 77788888889988 777776654 22588888999999999999999998754
No 136
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.34 E-value=0.045 Score=36.83 Aligned_cols=85 Identities=11% Similarity=-0.012 Sum_probs=48.7
Q ss_pred ccCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhH
Q 042210 33 EKGDLKYECKVFRKIT--QPSV----FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~~~----~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~ 106 (230)
+.|++++|...|+... .|+. ..+..+-.++.+.|++++|...|++..+.. |+...
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~----------------- 74 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDK----------------- 74 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTT-----------------
T ss_pred HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcc-----------------
Confidence 5566666666666543 2322 244444555555666666666665544321 22100
Q ss_pred HHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 107 KSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 107 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
....+..+-..|.+.|++++|...|++...
T Consensus 75 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 75 ------AAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 134455566778888889999888887764
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.34 E-value=0.02 Score=42.29 Aligned_cols=114 Identities=9% Similarity=-0.077 Sum_probs=81.7
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSV----------------FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~----------------~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
+-..+. +.|++++|...|++.. +.+. ..|..+-.+|.+.|++++|...+++..+.. +.
T Consensus 44 ~g~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~ 120 (198)
T 2fbn_A 44 EGNEFF--KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KN 120 (198)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc
Confidence 334566 8999999999998864 2222 678888888999999999999999976642 22
Q ss_pred CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHH-HHHhhcc
Q 042210 86 DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMAR-GIFYMSC 141 (230)
Q Consensus 86 ~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~-~vf~~m~ 141 (230)
+...|..+-.++...|++ |...+.... +...+..+-..+.+.++.+++. ..|..|-
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788889999998 888887776 6777888888888877777766 4444443
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.32 E-value=0.028 Score=38.31 Aligned_cols=87 Identities=8% Similarity=0.000 Sum_probs=69.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. +.|++++|...|+... +.+...|..+-.++...|++++|...|++..+.. +-+...|..+-.++..
T Consensus 13 ~~~g~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 13 KEQGNRLF--VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 55556777 9999999999999864 4456788889899999999999999999976643 1245577888888889
Q ss_pred cCch--hhHHHhhhh
Q 042210 100 DIAG--SLEKSCIVM 112 (230)
Q Consensus 100 ~~~~--a~~~~~~~~ 112 (230)
.|++ |...+....
T Consensus 90 ~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 90 MESYDEAIANLQRAY 104 (137)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 9998 777777665
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.32 E-value=0.017 Score=45.56 Aligned_cols=86 Identities=7% Similarity=-0.025 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~ 98 (230)
..+-..+. +.|++++|...|++.. +.+...|..+-.+|.+.|++++|...+++..+. .| +...+..+-.++.
T Consensus 8 ~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 8 KEQGNRLF--VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34445666 8888888888888764 335667788888888888888888888876543 34 3345556666666
Q ss_pred hcCch--hhHHHhhhh
Q 042210 99 RDIAG--SLEKSCIVM 112 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~ 112 (230)
..|++ |...+....
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 67776 666665554
No 140
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.28 E-value=0.0034 Score=42.37 Aligned_cols=30 Identities=3% Similarity=-0.062 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...+..+-..|.+.|++++|...|++...
T Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677778888888888888876543
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.26 E-value=0.062 Score=43.52 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~ 131 (230)
...|..+=..|.+.|++++|...|++-.+.. |+...+ ......++-. .....|..+-..|.+.|+++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~---------~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~ 213 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF---------SNEEAQKAQA--LRLASHLNLAMCHLKLQAFS 213 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC---------CSHHHHHHHH--HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC---------ChHHHHHHHH--HHHHHHHHHHHHHHHcCCHH
Confidence 4567778888889999999999999865532 221110 0000111000 04677888899999999999
Q ss_pred HHHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHH
Q 042210 132 MARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLV 169 (230)
Q Consensus 132 ~A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~ 169 (230)
+|...|++..+ | +...|..+-.++.. ++|.+.|++..+
T Consensus 214 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 214 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998765 4 44555555444432 455555555444
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.24 E-value=0.042 Score=37.64 Aligned_cols=80 Identities=9% Similarity=-0.000 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.|+...+. .|+.. . ..+-.+|. +.|++++|...|++.. +.+...|..+-.+|...|++++|...|+
T Consensus 30 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 30 PTAMRHYNEAVKR--DPENAILYSNRAACLT--KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhhHHH--hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5678888887766 35544 3 66778888 9999999999999865 5567789999999999999999999999
Q ss_pred HHHhCCCCCCc
Q 042210 77 DLLKSDVRRDN 87 (230)
Q Consensus 77 ~M~~~g~~p~~ 87 (230)
+-.+ +.|+.
T Consensus 106 ~al~--l~P~~ 114 (126)
T 4gco_A 106 DALQ--VDPSN 114 (126)
T ss_dssp HHHH--HCTTC
T ss_pred HHHH--HCcCC
Confidence 9765 34654
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.23 E-value=0.04 Score=38.31 Aligned_cols=85 Identities=6% Similarity=-0.156 Sum_probs=67.6
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcC
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI 101 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~ 101 (230)
+-..+. +.|++++|...|+... +.+...|..+-.+|.+.|++++|...|++..... +-+...|..+-.++...|
T Consensus 24 ~a~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQY--QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHH--HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 445566 9999999999999865 4466788888889999999999999999976643 224456777888899999
Q ss_pred ch--hhHHHhhhh
Q 042210 102 AG--SLEKSCIVM 112 (230)
Q Consensus 102 ~~--a~~~~~~~~ 112 (230)
++ |...++...
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 98 887777665
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.20 E-value=0.025 Score=40.47 Aligned_cols=86 Identities=14% Similarity=-0.002 Sum_probs=70.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~ 98 (230)
..+-..+. +.|++++|...|+... +.+...|..+=.+|.+.|++++|...|++..+.. | +...|..+=.++.
T Consensus 40 ~~lg~~~~--~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 40 YSYAYDFY--NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHH
Confidence 33445566 9999999999999876 4567789999999999999999999999976632 3 4567888888999
Q ss_pred hcCch--hhHHHhhhh
Q 042210 99 RDIAG--SLEKSCIVM 112 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~ 112 (230)
+.|+. |...++...
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 99999 888887766
No 145
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.20 E-value=0.033 Score=49.86 Aligned_cols=135 Identities=11% Similarity=-0.097 Sum_probs=103.3
Q ss_pred ccCChHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhc
Q 042210 33 EKGDLKYECKVFRKIT-----------QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRD 100 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~-----------~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~ 100 (230)
..|++++|.+.+++.. ..+...|..+-..|.+.|++++|...|++..+. .| +...|..+=.++.+.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHc
Confidence 8999999999998764 445667888888999999999999999997663 24 445677777888899
Q ss_pred Cch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHhhhcchhhhHHHHHHH
Q 042210 101 IAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKAVDDDLHELFPEYLVQ 170 (230)
Q Consensus 101 ~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~~~~~~~~~~~~m~~~ 170 (230)
|++ |...|+... +...|..+-..|.+.|++++ .+.|++..+ | +...|..+-..+...+..+...+.++.
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999 888888876 77888999999999999999 999988764 4 455676665555554434443333333
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.16 E-value=0.0095 Score=51.03 Aligned_cols=104 Identities=7% Similarity=-0.119 Sum_probs=78.7
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhH
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLE 106 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~ 106 (230)
+.|++++|.+.|++.. +.+...|..+-.+|.+.|++++|...|++-.+. .| +...|..+-.++.+.|++ |.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7889999999998764 445778888989999999999999999987765 33 455777888888889998 888
Q ss_pred HHhhhh-----hHhHHHHHHHH--HHhcCCHHHHHHHHh
Q 042210 107 KSCIVM-----RVFVQNALIST--YCLCGEVDMARGIFY 138 (230)
Q Consensus 107 ~~~~~~-----~~~~~~~li~~--y~~~g~~~~A~~vf~ 138 (230)
.++... +...+..+-.+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 887776 44555555555 888899999999998
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.16 E-value=0.15 Score=40.06 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=84.8
Q ss_pred HHHhhhccCChHHHHHHHHhcC-----CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC-----cccHH
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT-----QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRRD-----NYTFP 91 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~-----~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~-----~~t~~ 91 (230)
..+. ..|+.++|...+++.. ..+ ..+|+.+-..|...|++++|...|++.... ...|+ ..+|.
T Consensus 123 ~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 123 AYVL--KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHH--TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHh--cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4455 8889999999988753 122 347888889999999999999999986531 11222 24788
Q ss_pred HHHHHhhhcCch--hhHHHhhhh----h-------HhHHHHHHHHHHhcCCHHHH-HHHHhhc
Q 042210 92 FLFKGFTRDIAG--SLEKSCIVM----R-------VFVQNALISTYCLCGEVDMA-RGIFYMS 140 (230)
Q Consensus 92 ~ll~~~~~~~~~--a~~~~~~~~----~-------~~~~~~li~~y~~~g~~~~A-~~vf~~m 140 (230)
.+-..|.+.|++ |...+.... + ..+|..+-..|.+.|+.++| ...|++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 888899999999 877777765 2 56788888899999999999 6666643
No 148
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.15 E-value=0.044 Score=36.54 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCCCC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC------CCC----hhhHHHHHHHHHhcCChh
Q 042210 2 HQLKQIHSQTIKLGLLTK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT------QPS----VFLWNTMIKGYSRIDSHK 69 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~------~~~----~~~yn~li~~~~~~~~~~ 69 (230)
++|...++...+.. |+ ... ..+-..+. +.|++++|...|+... .++ ...|..+-..|.+.|+++
T Consensus 21 ~~A~~~~~~a~~~~--~~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 21 DTALKHYDKAKELD--PTNMTYITNQAAVYF--EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 46777888777664 43 344 77778888 9999999999998865 122 667888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHH
Q 042210 70 NGVLMYLDLLKSDVRRDNYTFPF 92 (230)
Q Consensus 70 ~a~~~~~~M~~~g~~p~~~t~~~ 92 (230)
+|...|++..+. .|+......
T Consensus 97 ~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 97 DAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHH
Confidence 999999998774 345433333
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.09 E-value=0.14 Score=40.12 Aligned_cols=132 Identities=8% Similarity=-0.066 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...++...+. .|+.. . ..+-..|. +.|++++|...+++.. +.+...|..+-.+|.+.|++++|...|+
T Consensus 21 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 21 PEAAACYGRAITR--NPLVAVYYTNRALCYL--KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4677788877765 45443 4 77778888 9999999999999876 3456788888899999999999999998
Q ss_pred HHHhCCCCCC-cccHHHHHHHh---hhcCchhhHHHh-hhh-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 77 DLLKSDVRRD-NYTFPFLFKGF---TRDIAGSLEKSC-IVM-RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 77 ~M~~~g~~p~-~~t~~~ll~~~---~~~~~~a~~~~~-~~~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+..+.+ |+ ...+...+... .+...+ ...-. ... +......+-. + ..|+.++|.+.+++..+
T Consensus 97 ~al~l~--p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 97 RAYSLA--KEQRLNFGDDIPSALRIAKKKRW-NSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHE 163 (281)
T ss_dssp HHHHHH--HHTTCCCCSHHHHHHHHHHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGT
T ss_pred HHHHhC--ccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhc
Confidence 865421 11 01111122211 111112 11001 111 4444444422 2 36899999998887765
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.08 Score=36.24 Aligned_cols=86 Identities=7% Similarity=-0.027 Sum_probs=67.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFK 95 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~ 95 (230)
..+-..+. +.|++++|...|++.. .|+ ...|..+-..|.+.|++++|...|++..+. .| +...+..+-.
T Consensus 32 ~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 107 (148)
T 2dba_A 32 RKEGNELF--KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHH
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHH
Confidence 44556677 9999999999999865 555 567888888999999999999999987664 33 4556777778
Q ss_pred HhhhcCch--hhHHHhhhh
Q 042210 96 GFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~ 112 (230)
++...|+. |...+....
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 88888888 777777665
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.03 E-value=0.072 Score=38.21 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHH-HHhcCCh--hHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKG-YSRIDSH--KNGVL 73 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~-~~~~~~~--~~a~~ 73 (230)
++|...++...+.. |+. .. ..+-..|. ..|++++|...|++.. +.+...|..+-.. +...|++ ++|..
T Consensus 27 ~~A~~~~~~al~~~--p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 27 EAQLQALQDKIRAN--PQNSEQWALLGEYYL--WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp CCCCHHHHHHHHHC--CSCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45666676666553 543 34 66778888 9999999999999875 4566677777777 7788998 99999
Q ss_pred HHHHHHhCCCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 74 MYLDLLKSDVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 74 ~~~~M~~~g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
.|++..+.. | +...+..+-..+...|++ |...+....
T Consensus 103 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 103 MIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999977642 4 345677788889999998 888887766
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.02 E-value=0.0055 Score=41.31 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHhcCC-CC-CcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLL-TK-PHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~-~~-~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
++|...++...+.+.. |+ ... ..+-..|. +.|++++|...|++.. +.+...|..+-.++.+.|++++|...|
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFR--TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566777776664321 32 223 55566677 8888888888888765 334567777788888888888888888
Q ss_pred HHHHhC-CCCCCcccHHHHHHHh
Q 042210 76 LDLLKS-DVRRDNYTFPFLFKGF 97 (230)
Q Consensus 76 ~~M~~~-g~~p~~~t~~~ll~~~ 97 (230)
++.... .-.|+...|...+..+
T Consensus 85 ~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 85 LKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH
Confidence 875443 2223333343344433
No 153
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.00 E-value=0.059 Score=48.29 Aligned_cols=151 Identities=11% Similarity=-0.081 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhcC---------CCC------------CcH-HHHHHHHhhhccCChHHHHHHHHhcC-C-C--ChhhH
Q 042210 2 HQLKQIHSQTIKLGL---------LTK------------PHC-PKQTRYLLLYEKGDLKYECKVFRKIT-Q-P--SVFLW 55 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~---------~~~------------~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-~-~--~~~~y 55 (230)
++|+++++.+.+... .|+ ..+ ...+.... +.|.++.|+.+|.... . | ....|
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er--R~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK--RIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 568888888876421 142 123 55556666 8899999999999875 2 2 12223
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh--------hHhHHHHHHHH
Q 042210 56 --NTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM--------RVFVQNALIST 123 (230)
Q Consensus 56 --n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~--------~~~~~~~li~~ 123 (230)
.+.|.-. ..++.+.|..+|+...+. ++-+..-|...++.....|+. |+.+|+... ...+|...+..
T Consensus 473 i~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 473 LENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3333222 135689999999996654 222344456777777778888 999999877 35789999999
Q ss_pred HHhcCCHHHHHHHHhhccC--CChhhhHHHHHHhh
Q 042210 124 YCLCGEVDMARGIFYMSCE--DDDGLHELIRIKAV 156 (230)
Q Consensus 124 y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~~ 156 (230)
-.+.|+.+.+.+|.+++.+ |+......++.-|.
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 9999999999999999986 77665555665554
No 154
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.99 E-value=0.1 Score=42.19 Aligned_cols=137 Identities=7% Similarity=-0.080 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHhcCCCCC-c----H-HHHHHHHhhhccCChHHHHHHHHhcC-----CCCh----hhHHHHHHHHHhcC
Q 042210 2 HQLKQIHSQTIKLGLLTKP-H----C-PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSV----FLWNTMIKGYSRID 66 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~----~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~----~~yn~li~~~~~~~ 66 (230)
++|...++...... .++. . . +.+-..+. ..|++++|...+++.. ..+. ..++.+-..+...|
T Consensus 31 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 31 DEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLH--CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp HHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 34566666655543 2221 1 2 33445666 8899999999988754 2232 23556666778889
Q ss_pred ChhHHHHHHHHHHhC----CCC--CC-cccHHHHHHHhhhcCch--hhHHHhhhh----------hHhHHHHHHHHHHhc
Q 042210 67 SHKNGVLMYLDLLKS----DVR--RD-NYTFPFLFKGFTRDIAG--SLEKSCIVM----------RVFVQNALISTYCLC 127 (230)
Q Consensus 67 ~~~~a~~~~~~M~~~----g~~--p~-~~t~~~ll~~~~~~~~~--a~~~~~~~~----------~~~~~~~li~~y~~~ 127 (230)
++++|...+++.... +-. |. ...+..+-..+...|++ |...+.... ....+..+-..+...
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 999999999886542 222 32 23455566778888988 777776654 134577778888999
Q ss_pred CCHHHHHHHHhhcc
Q 042210 128 GEVDMARGIFYMSC 141 (230)
Q Consensus 128 g~~~~A~~vf~~m~ 141 (230)
|++++|...+++..
T Consensus 188 g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 188 GDLDNARSQLNRLE 201 (373)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988764
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.97 E-value=0.043 Score=37.27 Aligned_cols=30 Identities=13% Similarity=-0.063 Sum_probs=21.1
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...+..+-..|.+.|++++|...|++..+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677777777888888887776554
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.94 E-value=0.04 Score=38.89 Aligned_cols=87 Identities=6% Similarity=-0.116 Sum_probs=69.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. +.|++++|...|+... +.+...|..+-.+|.+.|++++|...|++..... +-+...|..+-.++..
T Consensus 25 ~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 25 YSLAFNQY--QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 44556677 9999999999999865 4567788888889999999999999999976642 1245577778888999
Q ss_pred cCch--hhHHHhhhh
Q 042210 100 DIAG--SLEKSCIVM 112 (230)
Q Consensus 100 ~~~~--a~~~~~~~~ 112 (230)
.|++ |...+....
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 9998 777777665
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.94 E-value=0.1 Score=37.06 Aligned_cols=87 Identities=7% Similarity=-0.057 Sum_probs=69.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+-..+. +.|++++|...|++.. ..+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.++.+
T Consensus 15 ~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 15 KSEGNAAM--ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34446667 9999999999999865 4467788999999999999999999999976643 1245678888888999
Q ss_pred cCch--hhHHHhhhh
Q 042210 100 DIAG--SLEKSCIVM 112 (230)
Q Consensus 100 ~~~~--a~~~~~~~~ 112 (230)
.|++ |...+....
T Consensus 92 ~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 92 MADYKGAKEAYEKGI 106 (164)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 9998 777777666
No 158
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.91 E-value=0.015 Score=50.01 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=53.3
Q ss_pred ccCChHHHHHHHHhcC-------CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCcccHHHHHHHhh
Q 042210 33 EKGDLKYECKVFRKIT-------QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS---DVRRDNYTFPFLFKGFT 98 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~-------~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~---g~~p~~~t~~~ll~~~~ 98 (230)
..|++++|..++++.. -++ ..++|.|...|...|++++|..++++...- -..|+.-.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--------- 391 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ--------- 391 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH---------
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH---------
Confidence 6788888888776543 222 246788888888888888888888774321 11111100
Q ss_pred hcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 99 RDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
...+++.|-..|...|++++|..++++-.
T Consensus 392 --------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 392 --------------LGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556666667777777777776666443
No 159
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.91 E-value=0.071 Score=39.96 Aligned_cols=167 Identities=7% Similarity=-0.091 Sum_probs=108.7
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcC----ch--hhHHHhhhh
Q 042210 40 ECKVFRKIT-QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDI----AG--SLEKSCIVM 112 (230)
Q Consensus 40 a~~~~~~m~-~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~----~~--a~~~~~~~~ 112 (230)
|...|.+.- .-+...+..+=..|...+++++|...|++-.+.| +...+..|=..|.. + +. |...+....
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444433 4566677777778888999999999999987776 34456666666766 5 55 777777776
Q ss_pred ---hHhHHHHHHHHHHh----cCCHHHHHHHHhhccCCC-----hhhhHHHHHHhhh--------cchhhhHHHHHHHhh
Q 042210 113 ---RVFVQNALISTYCL----CGEVDMARGIFYMSCEDD-----DGLHELIRIKAVD--------DDLHELFPEYLVQML 172 (230)
Q Consensus 113 ---~~~~~~~li~~y~~----~g~~~~A~~vf~~m~~~~-----~~t~n~li~~~~~--------~~~~~~~~~m~~~~~ 172 (230)
+...+..|-..|.. .+++++|.+.|++-.+.+ ...++.|-..|.. +++++.|++-.+.+
T Consensus 81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~- 159 (212)
T 3rjv_A 81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS- 159 (212)
T ss_dssp HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-
T ss_pred HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Confidence 77778888788876 889999999999988733 4666666444433 35666666655442
Q ss_pred hcCchhhhhhhhhcccccCCccccc--ccCCccCCccccccccccCCC
Q 042210 173 ALPDTFMGEGLEVIPKSQAPREETP--RVGNLEEGTPQEGRPHEHSQD 218 (230)
Q Consensus 173 ~~p~~~t~~~l~~~~~~~~~~~a~~--~~g~~~~a~~i~~~~~~~~~~ 218 (230)
-.|+ ....|..+- ..+.. -..+.++|..++....+.|..
T Consensus 160 ~~~~--a~~~Lg~~y-----~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 160 RTGY--AEYWAGMMF-----QQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp CTTH--HHHHHHHHH-----HHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred CCHH--HHHHHHHHH-----HcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 1222 222222210 00111 123788899888888877644
No 160
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.89 E-value=0.32 Score=38.50 Aligned_cols=164 Identities=5% Similarity=-0.127 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhc------CCCCCc----H-HHHHHHHhhhccCChHHHHHHHHhcC-----CCC----hhhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLG------LLTKPH----C-PKQTRYLLLYEKGDLKYECKVFRKIT-----QPS----VFLWNTMIKG 61 (230)
Q Consensus 2 ~~a~~~~~~m~~~g------~~~~~~----~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~----~~~yn~li~~ 61 (230)
++|.+++++..+.. +.++.. . ......|. ..|++++|...|.+.. ..+ ...|+.+-..
T Consensus 8 ~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFK--NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666676665431 134422 2 34456677 8899999999887754 122 3468888888
Q ss_pred HHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHHHHHHHH
Q 042210 62 YSRIDSHKNGVLMYLDLLKS----DVRR-DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQNALIST 123 (230)
Q Consensus 62 ~~~~~~~~~a~~~~~~M~~~----g~~p-~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~ 123 (230)
|.+.|++++|...|++-... |-.+ -..++..+-..|.+ |++ |...+.... ...+++.+-..
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 164 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 99999999999999875432 2111 13466677777877 888 777776665 14678888899
Q ss_pred HHhcCCHHHHHHHHhhccC-----CC----hhhhHHHHHHhh----hcchhhhHHHHH
Q 042210 124 YCLCGEVDMARGIFYMSCE-----DD----DGLHELIRIKAV----DDDLHELFPEYL 168 (230)
Q Consensus 124 y~~~g~~~~A~~vf~~m~~-----~~----~~t~n~li~~~~----~~~~~~~~~~m~ 168 (230)
|.+.|++++|...|++..+ ++ ..+|..+...+. .++|.+.|++..
T Consensus 165 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999997764 22 113333333333 346666666655
No 161
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.85 E-value=0.041 Score=43.80 Aligned_cols=116 Identities=9% Similarity=-0.085 Sum_probs=85.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-------CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-Ccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-------QPS--VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRR-DNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-------~~~--~~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p-~~~ 88 (230)
+.+-..|. +.|++++|...|++.. .+. ..+|+.+-..|.. |++++|...|++-... |-.+ ...
T Consensus 80 ~~lg~~~~--~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 80 EQAGMMLK--DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHH--HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 55667788 8899999998887643 121 2467777788888 9999999999885442 2111 134
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh-----h------HhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM-----R------VFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~-----~------~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
++..+-..+.+.|++ |...+.... + ...+..+...|...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 677788889999999 888777776 1 2356667777888899999999999765
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.74 E-value=0.071 Score=45.20 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=41.4
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC--CC-C---------------hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT--QP-S---------------VFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~--~~-~---------------~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.+=..+. +.|++++|...|++.. .| + ...|+.+-.+|.+.|++++|...|++..+
T Consensus 273 ~~G~~~~--~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 273 EKGTVYF--KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3445566 8999999999998765 22 2 46777777888888888888888887655
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.074 Score=35.79 Aligned_cols=76 Identities=7% Similarity=-0.078 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhcCCCCC-cH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKP-HC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~-~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|...++...+.. |+. .. ..+-.+|. +.|++++|...|++.. +.+...|..+-.++...|++++|...|+
T Consensus 21 ~~A~~~~~~al~~~--p~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 21 PNAVKAYTEMIKRA--PEDARGYSNRAAALA--KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 46778888777663 543 34 77778888 9999999999999865 4456788888899999999999999999
Q ss_pred HHHhC
Q 042210 77 DLLKS 81 (230)
Q Consensus 77 ~M~~~ 81 (230)
+..+.
T Consensus 97 ~al~~ 101 (126)
T 3upv_A 97 AARTK 101 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
No 164
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.64 E-value=0.12 Score=42.05 Aligned_cols=145 Identities=6% Similarity=-0.144 Sum_probs=100.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-----CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCccc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-----QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKS----DVRRDNYT 89 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~----g~~p~~~t 89 (230)
+.+-..|. ..|++++|.+.|++.. .++ ..+++.+=..|...|++++|...|++-... +-+....+
T Consensus 186 ~~lg~~y~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 186 FVIAGNYD--DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 45667777 9999999999998754 222 246777888888999999999999987651 22223567
Q ss_pred HHHHHHHhhhcCch--hhHHHhhhh----------hHhHHHHHHHHHHhcCC---HHHHHHHHhhccC-CChh-hhHHHH
Q 042210 90 FPFLFKGFTRDIAG--SLEKSCIVM----------RVFVQNALISTYCLCGE---VDMARGIFYMSCE-DDDG-LHELIR 152 (230)
Q Consensus 90 ~~~ll~~~~~~~~~--a~~~~~~~~----------~~~~~~~li~~y~~~g~---~~~A~~vf~~m~~-~~~~-t~n~li 152 (230)
+..+-..+.+.|+. |...++... ....++.+-..|...|+ +++|...|++... |+.. .+..+-
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77888899999998 777777665 24456777778888888 8999999988544 2222 233333
Q ss_pred HHhhh----cchhhhHHHHHH
Q 042210 153 IKAVD----DDLHELFPEYLV 169 (230)
Q Consensus 153 ~~~~~----~~~~~~~~~m~~ 169 (230)
..+.. ++|.+.|++...
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 33332 456666665543
No 165
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.53 E-value=0.43 Score=40.23 Aligned_cols=184 Identities=6% Similarity=-0.113 Sum_probs=109.7
Q ss_pred CCCCcH-HHHHHHHhhhccC---ChHHHHHHHHhcC---CCChhhHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCC
Q 042210 17 LTKPHC-PKQTRYLLLYEKG---DLKYECKVFRKIT---QPSVFLWNTMIKGYSRI----DSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 17 ~~~~~~-~~ll~~~~~~~~~---~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~----~~~~~a~~~~~~M~~~g~~p 85 (230)
..++.. ..+-..|. +.| +.++|.+.|...- .++...+..+-..|... +++++|...|+.-. .|.
T Consensus 173 ~~~~~a~~~Lg~~~~--~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~-- 247 (452)
T 3e4b_A 173 NTTDICYVELATVYQ--KKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY-- 247 (452)
T ss_dssp TTCTTHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS--
T ss_pred cCCHHHHHHHHHHHH--HcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC--
Confidence 344446 77777787 888 8888888887754 33444335555556544 68889999998876 333
Q ss_pred CcccHHHHHHH-h--hhcCch--hhHHHhhhh---hHhHHHHHHHHHHhcC-----CHHHHHHHHhhccCCC-hhhhHHH
Q 042210 86 DNYTFPFLFKG-F--TRDIAG--SLEKSCIVM---RVFVQNALISTYCLCG-----EVDMARGIFYMSCEDD-DGLHELI 151 (230)
Q Consensus 86 ~~~t~~~ll~~-~--~~~~~~--a~~~~~~~~---~~~~~~~li~~y~~~g-----~~~~A~~vf~~m~~~~-~~t~n~l 151 (230)
...+..|=.. + ...++. |...+.... +...+..|=..|. .| ++++|.+.|++-. ++ ...+..|
T Consensus 248 -~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~L 324 (452)
T 3e4b_A 248 -PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYL 324 (452)
T ss_dssp -THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHH
Confidence 2333333333 2 345666 777777766 6777777777776 55 9999999999888 54 3444444
Q ss_pred HHHhhh--------cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccccccCC
Q 042210 152 RIKAVD--------DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRPHEHSQ 217 (230)
Q Consensus 152 i~~~~~--------~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~~~~~~ 217 (230)
-..|.. +++.+.|++-.+.| .|+....-+..... +..-..+.++|..++....+.|-
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~-------G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQ-------GKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHS-------CTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHh-------CCCCCCCHHHHHHHHHHHHHCCC
Confidence 333322 35666666655544 23322222211111 22233466777777777666653
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.49 E-value=0.33 Score=41.36 Aligned_cols=102 Identities=9% Similarity=-0.002 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++|.+.+++..+. .|+.. . ..+-..|. +.|++++|.+.+++.. +.+...|..+-.+|.+.|++++|...|+
T Consensus 23 ~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 23 ENAIKFYSQAIEL--NPSNAIYYGNRSLAYL--RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678888877776 46544 3 77778888 9999999999999865 4456788889999999999999999999
Q ss_pred HHHhCCCCCC-cccHHHHHHH--hhhcCch--hhHHHh
Q 042210 77 DLLKSDVRRD-NYTFPFLFKG--FTRDIAG--SLEKSC 109 (230)
Q Consensus 77 ~M~~~g~~p~-~~t~~~ll~~--~~~~~~~--a~~~~~ 109 (230)
+..+. .|+ ...+..+-.+ +.+.|++ |.+.++
T Consensus 99 ~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 97653 232 2344444444 6677777 777766
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.21 Score=41.09 Aligned_cols=138 Identities=9% Similarity=-0.079 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHhcCCCCC----------------cH-HHHHHHHhhhccCChHHHHHHHHhcC-----CCCh----hhH
Q 042210 2 HQLKQIHSQTIKLGLLTKP----------------HC-PKQTRYLLLYEKGDLKYECKVFRKIT-----QPSV----FLW 55 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~----------------~~-~~ll~~~~~~~~~~~~~a~~~~~~m~-----~~~~----~~y 55 (230)
++|.+.+....+..-.... .. ..+...|. +.|++++|.+.+.... .++. .+.
T Consensus 21 ~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 98 (434)
T 4b4t_Q 21 NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV--TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLK 98 (434)
T ss_dssp HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 4677777777665322111 12 45778888 9999999999998765 1221 122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-cccHHHHHHHhhhcCch--hhHHHhhhh-----------hHhHH
Q 042210 56 NTMIKGYSRIDSHKNGVLMYLDLLK----SDVRRD-NYTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVFVQ 117 (230)
Q Consensus 56 n~li~~~~~~~~~~~a~~~~~~M~~----~g~~p~-~~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~~~ 117 (230)
+.+=..+...|+++.+..++++... .+..+. ..++..+-..+...|++ |..++.... ....|
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 2222233446889999999988643 333332 34667788889999998 777776665 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 118 NALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 118 ~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
..+...|...|++++|...++...
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999988654
No 168
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.40 E-value=0.48 Score=38.18 Aligned_cols=118 Identities=9% Similarity=-0.144 Sum_probs=82.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC--CC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-ccHHH-
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT--QP------SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPF- 92 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~--~~------~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~-~t~~~- 92 (230)
..+-..+. ..|++++|...+++.. .+ ....|..+-..+...|++++|...+++.....-.++. ..+..
T Consensus 139 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 139 RIRAQLLW--AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 34556777 9999999999998753 11 1245777778888899999999999987653212211 12222
Q ss_pred ----HHHHhhhcCch--hhHHHhhhh---------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 93 ----LFKGFTRDIAG--SLEKSCIVM---------RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 93 ----ll~~~~~~~~~--a~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
....+...|+. |...+.... ....+..+...|...|++++|...+++...
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22346688888 777777665 123466777889999999999999987643
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.23 E-value=0.33 Score=32.98 Aligned_cols=91 Identities=10% Similarity=0.113 Sum_probs=57.6
Q ss_pred HHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhhcCc
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTRDIA 102 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~~~~ 102 (230)
..+. +.|++++|.+.|++.. +.+...|+.+=.+|.+.|++++|+..|++-.+.+ |+ ...|..+
T Consensus 16 ~~~~--~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~--------- 82 (127)
T 4gcn_A 16 NAAY--KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLI--------- 82 (127)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHH---------
T ss_pred HHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHH---------
Confidence 4455 7788888888887654 4456667777777778888888888777654321 11 1112111
Q ss_pred hhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 103 GSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 103 ~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
..+|..+=..|...|++++|.+.|++-.
T Consensus 83 -----------a~~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 83 -----------AKAMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234445566778888888888887643
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.12 E-value=0.16 Score=33.55 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhcCCCCCc-H-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH-C-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~-~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
+.|...++...+. .|+.. . ..+-..|. +.|++++|...|++.. +.+...|..+-..|.+.|++++|...|+
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYA--EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455666655443 35433 3 56667777 8888888888888764 3445677777788888888888888887
Q ss_pred HHHh
Q 042210 77 DLLK 80 (230)
Q Consensus 77 ~M~~ 80 (230)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.11 E-value=0.16 Score=34.89 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----cccHHHHHHHhhhcCch--hhHHHhhhh-----------hHh
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR-RD----NYTFPFLFKGFTRDIAG--SLEKSCIVM-----------RVF 115 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~-p~----~~t~~~ll~~~~~~~~~--a~~~~~~~~-----------~~~ 115 (230)
+|..+-..|...|++++|...+++..+..-. ++ ..++..+-..+...|++ |...+.... ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5677777888899999999999886543111 11 13677777888888988 777776655 255
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
.+..+-..|...|++++|.+.|++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67778889999999999999988765
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.07 E-value=0.27 Score=34.59 Aligned_cols=58 Identities=9% Similarity=-0.101 Sum_probs=37.2
Q ss_pred cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChh
Q 042210 89 TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDG 146 (230)
Q Consensus 89 t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~ 146 (230)
.|..+-.++.+.|++ |...+.... +...|..+-.+|...|++++|...|+...+ |+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 444445555555555 444444443 566677777888888999999988887654 5543
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.94 E-value=0.056 Score=43.86 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=57.1
Q ss_pred HHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 26 TRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
-..+. +.|++++|...|++.. .|+... +...++.+++..-+. ...|..+-.++.+.|++
T Consensus 186 g~~~~--~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 186 GNSLF--KEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHTC--SSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCC
T ss_pred HHHHH--hcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCH
Confidence 34555 8899999999998754 343221 111112222211110 11344444555555555
Q ss_pred --hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CC-hhhhHHHHHH-----hhhcchhhhHHHHH
Q 042210 104 --SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DD-DGLHELIRIK-----AVDDDLHELFPEYL 168 (230)
Q Consensus 104 --a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~-~~t~n~li~~-----~~~~~~~~~~~~m~ 168 (230)
|...+.... +...|..+-.+|...|++++|...|++..+ |+ ...++.+-.. ...+++.+.|.+|+
T Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444443 566677778888899999999999998765 43 3334443222 11235556666666
Q ss_pred HHh
Q 042210 169 VQM 171 (230)
Q Consensus 169 ~~~ 171 (230)
...
T Consensus 327 ~~~ 329 (338)
T 2if4_A 327 KGK 329 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.94 E-value=0.17 Score=33.81 Aligned_cols=80 Identities=6% Similarity=-0.049 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhcCCCCCc----H-HHHHHHHhhhccCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhcCChhH
Q 042210 2 HQLKQIHSQTIKLGLLTKPH----C-PKQTRYLLLYEKGDLKYECKVFRKIT--QPS----VFLWNTMIKGYSRIDSHKN 70 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~----~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~----~~~yn~li~~~~~~~~~~~ 70 (230)
++|...++...+.. |+.. . ..+-..+. +.|++++|...|+... .|+ ...+..+-.++.+.|++++
T Consensus 19 ~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 19 DDASQLFLSFLELY--PNGVYTPNALYWLGESYY--ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp HHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 46788888877764 4333 4 55667777 9999999999999875 344 4457777788899999999
Q ss_pred HHHHHHHHHhCCCCCCc
Q 042210 71 GVLMYLDLLKSDVRRDN 87 (230)
Q Consensus 71 a~~~~~~M~~~g~~p~~ 87 (230)
|...|++..... |+.
T Consensus 95 A~~~~~~~~~~~--p~~ 109 (129)
T 2xev_A 95 AQQTLQQVATQY--PGS 109 (129)
T ss_dssp HHHHHHHHHHHS--TTS
T ss_pred HHHHHHHHHHHC--CCC
Confidence 999999987643 554
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.73 E-value=0.14 Score=44.05 Aligned_cols=57 Identities=4% Similarity=-0.187 Sum_probs=38.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC----------CCh-hhhHHHHHHhh----hcchhhhHHHHHH
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE----------DDD-GLHELIRIKAV----DDDLHELFPEYLV 169 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~----------~~~-~t~n~li~~~~----~~~~~~~~~~m~~ 169 (230)
...+++.|...|...|++++|..++++..+ |++ .++|.|-..|. .++|..++++-.+
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788899999999999999998886643 333 34665544443 3456666555443
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.61 E-value=0.18 Score=41.48 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=54.2
Q ss_pred HHHHHhhhccCChHHHHHHHHhcCC-------------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKITQ-------------------PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~~-------------------~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
+-..+. +.|++++|.+.|++... .+...|+.+-.+|.+.|++++|...+++..+. .|
T Consensus 229 ~g~~~~--~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 229 IGNTFF--KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHH--HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 334555 78888888888776432 12345666666666677777777777665542 23
Q ss_pred CcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 86 DNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 86 ~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+ +...|..+-.+|.+.|++++|.+.|++..+
T Consensus 305 ~--------------------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 S--------------------------NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h--------------------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 344455555666677777777777776543
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.33 E-value=0.18 Score=33.97 Aligned_cols=84 Identities=10% Similarity=0.042 Sum_probs=64.2
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHhhhc
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR-DNYTFPFLFKGFTRD 100 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p-~~~t~~~ll~~~~~~ 100 (230)
+-..+. +.|++++|...|+... +.+...|..+=.++.+.|++++|...|++-.+. .| +...+..+-.++.+.
T Consensus 23 ~g~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSML--KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 335666 8999999999999875 446677888888899999999999999986653 34 344677777788888
Q ss_pred Cch--hhHHHhhhh
Q 042210 101 IAG--SLEKSCIVM 112 (230)
Q Consensus 101 ~~~--a~~~~~~~~ 112 (230)
|+. |...++...
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 888 776666543
No 178
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.29 E-value=0.41 Score=42.90 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=65.1
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhh
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCI 110 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~ 110 (230)
..|+++.|.++.+.+ .+...|..+-..+.+.++++.|.+.|..+.. |..+...+...++. ...+-+.
T Consensus 664 ~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 566677776766655 3446788888888888888888888887643 45555555556655 2222222
Q ss_pred hhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 111 VMRVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 111 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
....--++.....|.++|++++|.+++.++.+
T Consensus 733 a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 733 AETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 22333455666778888888888888887765
No 179
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.07 E-value=2.5 Score=36.09 Aligned_cols=95 Identities=6% Similarity=0.009 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH--HHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHH
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFP--FLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYC 125 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~--~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~ 125 (230)
|-..+...-+.++++.|-.+|+.....+ .+...|. +.+..... ++. |+.+|+... ++..|...++...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~~-~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYAT-GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4444444445677888999998872111 1222232 22222222 235 888888776 4666788899889
Q ss_pred hcCCHHHHHHHHhhccCCChhhhHHHHH
Q 042210 126 LCGEVDMARGIFYMSCEDDDGLHELIRI 153 (230)
Q Consensus 126 ~~g~~~~A~~vf~~m~~~~~~t~n~li~ 153 (230)
+.|+.+.|+.+|+... .....|...+.
T Consensus 366 ~~~~~~~aR~l~er~~-k~~~lw~~~~~ 392 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-KTSRMWDSMIE 392 (493)
T ss_dssp HHTCHHHHHHHHHHSC-CBHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999984 34566777664
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.07 E-value=0.55 Score=39.68 Aligned_cols=101 Identities=13% Similarity=-0.033 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----------------cccHHHHHHHhhhcCch--hhHHHhhhh--
Q 042210 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD----------------NYTFPFLFKGFTRDIAG--SLEKSCIVM-- 112 (230)
Q Consensus 53 ~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~----------------~~t~~~ll~~~~~~~~~--a~~~~~~~~-- 112 (230)
..|..+=..|.+.|++++|...|++-.+. .|+ ...|..+-.++.+.|++ |...+....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45777778888999999999999987653 232 36788888899999999 888887776
Q ss_pred ---hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhhhHHHHHHh
Q 042210 113 ---RVFVQNALISTYCLCGEVDMARGIFYMSCE--D-DDGLHELIRIKA 155 (230)
Q Consensus 113 ---~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~-~~~t~n~li~~~ 155 (230)
+...|..+-.+|.+.|++++|...|++..+ | +...|..+-..+
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 678888889999999999999999998876 4 334555554433
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.06 E-value=0.31 Score=33.09 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcC--CC----C----hhhHHHHHHHHHhcCChh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKIT--QP----S----VFLWNTMIKGYSRIDSHK 69 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~--~~----~----~~~yn~li~~~~~~~~~~ 69 (230)
++|...|+...+. .|+... ..+-.+|. +.|++++|.+.|++.. .| + ...|..+=.++...|+++
T Consensus 25 ~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 25 EKAHVHYDKAIEL--DPSNITFYNNKAAVYF--EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHhHHHHHH--HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 5788888887765 466544 66778888 9999999999998764 12 1 124555666777889999
Q ss_pred HHHHHHHHHHhCCCCCCccc
Q 042210 70 NGVLMYLDLLKSDVRRDNYT 89 (230)
Q Consensus 70 ~a~~~~~~M~~~g~~p~~~t 89 (230)
+|.+.|++-.. ..||..+
T Consensus 101 ~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 101 LAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHHHHHh--hCcCHHH
Confidence 99999988654 2355433
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.12 Score=33.56 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=45.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
..+-..+. +.|++++|.+.|++.. +.+...|..+-.+|.+.|++++|...|++..+.
T Consensus 8 ~~~g~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 8 KEQGNSLF--KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455666 8899999999998864 446677888888889999999999999887653
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.78 E-value=0.23 Score=40.20 Aligned_cols=102 Identities=8% Similarity=-0.048 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMA 133 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A 133 (230)
.|..+-..+.+.|++++|...|++-... .|+... +...++.. .....+ ....|+.+-..|.+.|++++|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~-~~~~~l-~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQ-DMALAV-KNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHH-HHHHHH-HTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHH-HHHHHH-HHHHHHHHHHHHHHcCCHHHH
Confidence 3556666777889999999999885542 232211 11222220 000111 234788888899999999999
Q ss_pred HHHHhhccC--C-ChhhhHHHHHHhhhc----chhhhHHH
Q 042210 134 RGIFYMSCE--D-DDGLHELIRIKAVDD----DLHELFPE 166 (230)
Q Consensus 134 ~~vf~~m~~--~-~~~t~n~li~~~~~~----~~~~~~~~ 166 (230)
...|++..+ | +...|..+-.++... +|.+.|++
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999997754 4 556676665666544 44444444
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.053 Score=35.28 Aligned_cols=63 Identities=10% Similarity=-0.041 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHH
Q 042210 52 VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVD 131 (230)
Q Consensus 52 ~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~ 131 (230)
...|..+-..+.+.|++++|...|++..+. .|+ +...|..+-..|.+.|+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~--------------------------~~~~~~~lg~~~~~~g~~~ 55 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQ--------------------------NPVGYSNKAMALIKLGEYT 55 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT--------------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------------------------CHHHHHHHHHHHHHhcCHH
Confidence 345556666777778888888877775442 222 3445556666777777777
Q ss_pred HHHHHHhhccC
Q 042210 132 MARGIFYMSCE 142 (230)
Q Consensus 132 ~A~~vf~~m~~ 142 (230)
+|.+.|++..+
T Consensus 56 ~A~~~~~~al~ 66 (111)
T 2l6j_A 56 QAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 185
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.68 E-value=0.68 Score=38.97 Aligned_cols=143 Identities=12% Similarity=-0.020 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhcCCCCCcHHHHHHHHhhhccCCh---HHHHHHHHhcCCCChhhHHHHHHHHHhcC-----ChhHHHH
Q 042210 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDL---KYECKVFRKITQPSVFLWNTMIKGYSRID-----SHKNGVL 73 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~m~~~~~~~yn~li~~~~~~~-----~~~~a~~ 73 (230)
++|.+++....+.|-. +.. ..+=..|. ..|+. ++|...|.+....+...+..+-..+...+ ++++|..
T Consensus 20 ~~A~~~~~~aa~~g~~-~A~-~~Lg~~y~--~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 20 VTAQQNYQQLAELGYS-EAQ-VGLADIQV--GTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHHTCC-TGG-GTCC------------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-HHH-HHHHHHHH--ccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 5688888888887732 222 33333445 56666 89999998876546656666655444444 7789999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhhcCch-----hhHHHhhhh---hHhHHHHHHHHHHhcC----CHHHHHHHHhhcc
Q 042210 74 MYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-----SLEKSCIVM---RVFVQNALISTYCLCG----EVDMARGIFYMSC 141 (230)
Q Consensus 74 ~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-----a~~~~~~~~---~~~~~~~li~~y~~~g----~~~~A~~vf~~m~ 141 (230)
.|++-.+.|-.. .+..|-..|...+.. +.+.+.... +...+..|-..|...+ ..+++..++....
T Consensus 96 ~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~ 172 (452)
T 3e4b_A 96 LLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL 172 (452)
T ss_dssp HHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 999877765432 555566666555543 222222222 4455555556666555 3444444555444
Q ss_pred CCChhhhHHH
Q 042210 142 EDDDGLHELI 151 (230)
Q Consensus 142 ~~~~~t~n~l 151 (230)
..+...+..|
T Consensus 173 ~~~~~a~~~L 182 (452)
T 3e4b_A 173 NTTDICYVEL 182 (452)
T ss_dssp TTCTTHHHHH
T ss_pred cCCHHHHHHH
Confidence 4333344444
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.61 E-value=0.33 Score=31.32 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=42.6
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
..+-..|. +.|++++|...|++.. +.+...|..+-.+|.+.|++++|...|++-.+
T Consensus 11 ~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 11 YALAQEHL--KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677 8888888888888765 33456788888888888888888888887543
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.55 E-value=0.37 Score=40.68 Aligned_cols=75 Identities=7% Similarity=-0.199 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHh---CCCCCC----cccHHHHHHHhhhcCch--hhHHHhhhh-------------hHhHHHHHHHH
Q 042210 66 DSHKNGVLMYLDLLK---SDVRRD----NYTFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFVQNALIST 123 (230)
Q Consensus 66 ~~~~~a~~~~~~M~~---~g~~p~----~~t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~~~~li~~ 123 (230)
|++++|..++++-.. .-+.|+ ..+++.|..+|...|++ |..++.... ...+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455666666655322 112222 13444455555555555 444444433 34456666666
Q ss_pred HHhcCCHHHHHHHHhhc
Q 042210 124 YCLCGEVDMARGIFYMS 140 (230)
Q Consensus 124 y~~~g~~~~A~~vf~~m 140 (230)
|...|++++|..++++-
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 66677776666666643
No 188
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.50 E-value=0.11 Score=46.61 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=72.9
Q ss_pred ccCChHHHHH-HHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHh
Q 042210 33 EKGDLKYECK-VFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSC 109 (230)
Q Consensus 33 ~~~~~~~a~~-~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~ 109 (230)
..+++++|.+ ++..++ +......++..+-+.|.++.|+++.++- ..-+......|++ |.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHH
Confidence 6788888888 664443 1222377778888889999888876321 1224445667888 888888
Q ss_pred hhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 042210 110 IVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144 (230)
Q Consensus 110 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~ 144 (230)
.+.+...|..|-..+.+.|+++.|++.|..+.+.+
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~ 711 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLE 711 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChh
Confidence 77789999999999999999999999999887633
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.44 E-value=0.51 Score=29.03 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=44.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
..+-..+. +.|++++|...|++.. +.+...|..+-..+.+.|++++|...|++..+.
T Consensus 13 ~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 13 YNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44556677 8899999999998764 445667888888888999999999999887653
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.43 E-value=0.33 Score=31.90 Aligned_cols=65 Identities=15% Similarity=0.021 Sum_probs=41.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCC
Q 042210 50 PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGE 129 (230)
Q Consensus 50 ~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~ 129 (230)
.+...|..+-..|.+.|++++|...|++..+. .|+ +...|..+-..|.+.|+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPT--------------------------YSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------------CHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCC--------------------------cHHHHHHHHHHHHHcCC
Confidence 34556667777777777777777777775442 122 24445556666667777
Q ss_pred HHHHHHHHhhccC
Q 042210 130 VDMARGIFYMSCE 142 (230)
Q Consensus 130 ~~~A~~vf~~m~~ 142 (230)
+++|...|++..+
T Consensus 69 ~~~A~~~~~~al~ 81 (115)
T 2kat_A 69 RAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 191
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.35 E-value=2.3 Score=34.00 Aligned_cols=197 Identities=10% Similarity=-0.046 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccC--ChHHHHHHHHhcC---CCChhhHHHHHHHH----Hhc---CChh
Q 042210 4 LKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKG--DLKYECKVFRKIT---QPSVFLWNTMIKGY----SRI---DSHK 69 (230)
Q Consensus 4 a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~--~~~~a~~~~~~m~---~~~~~~yn~li~~~----~~~---~~~~ 69 (230)
|.++.+.+... .|+..+ +.==..+. ..| +++++.+.++.+- +.+...|+---..+ .+. ++++
T Consensus 52 aL~~t~~~L~~--nP~~~taWn~R~~~L~--~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 52 ALHITELGINE--LASHYTIWIYRFNILK--NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHH--TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHH--CcHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 44444444433 355444 33333444 556 7788888877765 34445565433333 333 6777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch----hhHHHhhhh-----hHhHHHHHHHHHHhcCC------HHHHH
Q 042210 70 NGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG----SLEKSCIVM-----RVFVQNALISTYCLCGE------VDMAR 134 (230)
Q Consensus 70 ~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~----a~~~~~~~~-----~~~~~~~li~~y~~~g~------~~~A~ 134 (230)
+++.+++.+.+..-+ |...|+----...+.|.+ +.+..+.+. +-..|+.---.+.+.|+ ++++.
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 888888777653211 333343333333333332 333344443 55566555555555555 67777
Q ss_pred HHHhhccC---CChhhhHHHHHHhhh-----cchhhhHHHHHHHhhh-cCchhhhhhhhhcccccCCcccccccCCccCC
Q 042210 135 GIFYMSCE---DDDGLHELIRIKAVD-----DDLHELFPEYLVQMLA-LPDTFMGEGLEVIPKSQAPREETPRVGNLEEG 205 (230)
Q Consensus 135 ~vf~~m~~---~~~~t~n~li~~~~~-----~~~~~~~~~m~~~~~~-~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a 205 (230)
+.+++... .|...|+-.-..... .+..+++.+....+.. ..+.+.... + ...+.+.|+.++|
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~---l------a~~~~~~~~~~~A 277 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET---L------AKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH---H------HHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH---H------HHHHHccCCHHHH
Confidence 77766553 355567654332221 1222233332222101 112233333 2 1155677888888
Q ss_pred ccccccccc
Q 042210 206 TPQEGRPHE 214 (230)
Q Consensus 206 ~~i~~~~~~ 214 (230)
.+++..+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887764
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.85 Score=37.38 Aligned_cols=140 Identities=7% Similarity=-0.124 Sum_probs=88.4
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CCCh------------------hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QPSV------------------FLWNTMIKGYSRIDSHKNGVLMYLDLLKS-DVRR 85 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~~~------------------~~yn~li~~~~~~~~~~~a~~~~~~M~~~-g~~p 85 (230)
..+. +.|++++|.+.|.... .|+. ..+..+...|...|++++|.+.+...... +-.+
T Consensus 12 ~~l~--~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 12 RRLV--NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHH--HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHH--HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 4456 8899999999998764 1111 13677889999999999999999986542 2222
Q ss_pred Cccc---HHHHHH-HhhhcCch--hhHHHhhhh-----------hHhHHHHHHHHHHhcCCHHHHHHHHhhccC------
Q 042210 86 DNYT---FPFLFK-GFTRDIAG--SLEKSCIVM-----------RVFVQNALISTYCLCGEVDMARGIFYMSCE------ 142 (230)
Q Consensus 86 ~~~t---~~~ll~-~~~~~~~~--a~~~~~~~~-----------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~------ 142 (230)
+..+ ....+. .+...|+. +..++.... -..++..|...|...|++++|..++++...
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 2221 112222 22233444 555555544 355778899999999999999999886642
Q ss_pred --CC-hhhhHHHHHHhhhc----chhhhHHHHH
Q 042210 143 --DD-DGLHELIRIKAVDD----DLHELFPEYL 168 (230)
Q Consensus 143 --~~-~~t~n~li~~~~~~----~~~~~~~~m~ 168 (230)
+. ...|+.++..|... +|...+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 22 22455556666543 4444444433
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.04 E-value=0.27 Score=41.40 Aligned_cols=83 Identities=10% Similarity=-0.100 Sum_probs=48.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC--C-CCCC----cccHHHHHHHhhhcCch--hhHHHhhhh-------------hHhH
Q 042210 59 IKGYSRIDSHKNGVLMYLDLLKS--D-VRRD----NYTFPFLFKGFTRDIAG--SLEKSCIVM-------------RVFV 116 (230)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~M~~~--g-~~p~----~~t~~~ll~~~~~~~~~--a~~~~~~~~-------------~~~~ 116 (230)
+..+.+.|++++|..++++.... . +.|+ ..+++.|...|...|++ |..++.... ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33444556777777777665432 1 2222 12455555555555665 444444443 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
++.|-..|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777888888888877776543
No 194
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.96 E-value=2 Score=31.47 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=76.4
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhh
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIV 111 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~ 111 (230)
..|+++.|.++.+++ .+...|..|=....+.|+++-|.+.|+... -|..+.-.|.-.|+. .......+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999999998887 456689999999999999999999998854 356666666667776 33333222
Q ss_pred h-hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 112 M-RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 112 ~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
. ..--+|.....+.-.|+++++.++|.+..+
T Consensus 86 A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 86 AQTREDFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 2 444567777788889999999999987655
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.93 E-value=0.57 Score=38.46 Aligned_cols=104 Identities=6% Similarity=-0.092 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhh-hHhHHHHHHHHHHhcCCHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVM-RVFVQNALISTYCLCGEVDM 132 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~-~~~~~~~li~~y~~~g~~~~ 132 (230)
.|..+-..+.+.|++++|...|++..+. +........ .......-. +...|+.+-..|.+.|++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 291 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAE-DADGAKLQPVALSCVLNIGACKLKMSDWQG 291 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSC-HHHHGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH------------hhcCccccC-hHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 3666777888899999999999875541 000000000 111111111 67888899999999999999
Q ss_pred HHHHHhhccC--C-ChhhhHHHHHHhhh----cchhhhHHHHHHH
Q 042210 133 ARGIFYMSCE--D-DDGLHELIRIKAVD----DDLHELFPEYLVQ 170 (230)
Q Consensus 133 A~~vf~~m~~--~-~~~t~n~li~~~~~----~~~~~~~~~m~~~ 170 (230)
|.+.+++..+ | +...|..+-.++.. ++|++.+++..+.
T Consensus 292 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999998776 4 34455555444443 4666666665543
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.23 E-value=1.4 Score=37.77 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=78.9
Q ss_pred HHHHHhhhccCChHHHHHHHHhcCCCChhhHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhh
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKITQPSVFLWNT-----MIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT 98 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~-----li~~~~~~~~~~~a~~~~~~M~~~g~~p~~-~t~~~ll~~~~ 98 (230)
.+.... +.+.++.|+.+|+....|+ .++.. .+... ..++++.|..+|+...+.- |+. .-+...++-..
T Consensus 292 y~~~~~--r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 292 HLNYVL--KKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHH--HHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 344444 6778999999999886443 23332 22222 2347999999999966532 332 23444566666
Q ss_pred hcCch--hhHHHhhhh-hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 99 RDIAG--SLEKSCIVM-RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+.|+. ++.+|+... ....|...++.=.+.|+.+.++++++++.
T Consensus 366 ~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77887 899999887 78889999998889999999999998775
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.99 E-value=1 Score=27.50 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHH
Q 042210 53 FLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDM 132 (230)
Q Consensus 53 ~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~ 132 (230)
..|..+-..+.+.|++++|...|++..+. .|+ +...+..+-..|.+.|++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~--------------------------~~~~~~~l~~~~~~~~~~~~ 61 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN--------------------------NAEAWYNLGNAYYKQGDYDE 61 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC--------------------------CHHHHHHHHHHHHHHhhHHH
Confidence 35566666777788888888888775542 121 23445556666777778888
Q ss_pred HHHHHhhccC
Q 042210 133 ARGIFYMSCE 142 (230)
Q Consensus 133 A~~vf~~m~~ 142 (230)
|.+.|++..+
T Consensus 62 A~~~~~~a~~ 71 (91)
T 1na3_A 62 AIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777776543
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.94 E-value=1.1 Score=35.38 Aligned_cols=113 Identities=4% Similarity=-0.167 Sum_probs=79.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh---h----HhHHHHHHHHHHhc
Q 042210 57 TMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM---R----VFVQNALISTYCLC 127 (230)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~---~----~~~~~~li~~y~~~ 127 (230)
.....+...|++++|.++|+.....+ |+....-.+-..+.+.+++ +...+.... + ...+..+=.++.+.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 35566778899999999999887643 5443444455578888998 888887665 1 23566667789999
Q ss_pred CCHHHHHHHHhhccC-CC-h--h---hhHH---HHHHhhhcchhhhHHHHHHHh
Q 042210 128 GEVDMARGIFYMSCE-DD-D--G---LHEL---IRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 128 g~~~~A~~vf~~m~~-~~-~--~---t~n~---li~~~~~~~~~~~~~~m~~~~ 171 (230)
|++++|.+.|++... |. . . .|+. +...+..++|.+.|+++....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999998753 32 1 1 1221 223344578999999888765
No 199
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=91.62 E-value=4.3 Score=32.35 Aligned_cols=134 Identities=9% Similarity=0.002 Sum_probs=76.2
Q ss_pred CChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc------h
Q 042210 35 GDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHK--NGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA------G 103 (230)
Q Consensus 35 ~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~--~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~------~ 103 (230)
++++++.++++.+- +.|...|+----.+.+.|.++ ++++.++.+.+.... |...|+---....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 67777777777765 556667766666666667766 788888887765433 44445444344444443 2
Q ss_pred --hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHH-HHHHHhhccC------CChhhhHHHHHHhhh----cchhhhHH
Q 042210 104 --SLEKSCIVM-----RVFVQNALISTYCLCGEVDM-ARGIFYMSCE------DDDGLHELIRIKAVD----DDLHELFP 165 (230)
Q Consensus 104 --a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~-A~~vf~~m~~------~~~~t~n~li~~~~~----~~~~~~~~ 165 (230)
+.+...... |...|+-+-..+.+.|+... +..+.++..+ ++...+..+...+.. ++|.+.++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 333333333 77777777777777777433 4445444332 233444444444443 35666666
Q ss_pred HHHH
Q 042210 166 EYLV 169 (230)
Q Consensus 166 ~m~~ 169 (230)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.76 E-value=1.9 Score=27.54 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=32.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhhcCch
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRD-NYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~-~~t~~~ll~~~~~~~~~ 103 (230)
+...|..+-..|.+.|++++|...|++..+.. |+ ...|..+-.++.+.|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRT 57 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 45567777778888888888888888865532 32 22344444444444444
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.50 E-value=1.3 Score=31.86 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=64.1
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CCC--------hh-----hHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCC
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QPS--------VF-----LWNTMIKGYSRIDSHKNGVLMYLDLLKS-----DVRRD 86 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~~--------~~-----~yn~li~~~~~~~~~~~a~~~~~~M~~~-----g~~p~ 86 (230)
..+. +.|++++|...|++.- .|+ .. .|+.+=.++.+.|++++|+..|++-.+. .+.|+
T Consensus 19 ~~l~--~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 19 QRQL--VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHH--HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHH--HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 4455 8899999999999865 333 22 7888888899999999999998875442 12343
Q ss_pred cccHHHHHHHhhhcCchhhHHHhhhhhHhHH----HHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 87 NYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQ----NALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 87 ~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
+...| ...=.++.+.|++++|..-|++-.+
T Consensus 97 --------------------------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 --------------------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23334 5556678889999999999987653
No 202
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.31 E-value=1.7 Score=28.66 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
++|..+-+++...|- ..+..+|+.-.+-..|++++|..+.+....||...|-+| +-.+.|-.+++..-+.++..+
T Consensus 24 qEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 24 EEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL--CEYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 356667777766653 111455544333288999999999999999999999887 556777777777777777666
Q ss_pred CC
Q 042210 82 DV 83 (230)
Q Consensus 82 g~ 83 (230)
|-
T Consensus 99 g~ 100 (116)
T 2p58_C 99 QD 100 (116)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 203
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.65 E-value=1.6 Score=28.77 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcHHHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 2 HQLKQIHSQTIKLGLLTKPHCPKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
++|..+-+++...|- ..+..+|+.-.+-..|++++|..+.+....||...|-+| +-.+.|-.+++..-+.++..+
T Consensus 23 qEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFAL--CEWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 356667777766653 111455544333289999999999999999999999887 566778888877777787776
Q ss_pred CC
Q 042210 82 DV 83 (230)
Q Consensus 82 g~ 83 (230)
|-
T Consensus 98 g~ 99 (115)
T 2uwj_G 98 SD 99 (115)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 204
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.20 E-value=0.96 Score=31.65 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=35.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
..+-.+|. +.|++++|...++... +.+...|..+-.+|...|++++|...|++-..
T Consensus 67 ~nla~~~~--~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 67 ANMSQCYL--NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHH--HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44445555 6777777777766643 33455666666667777777777777766444
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.97 E-value=0.97 Score=28.45 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=40.5
Q ss_pred HHHhhhccCChHHHHHHHHhcC--CC-Chh-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT--QP-SVF-LWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~--~~-~~~-~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
..+. +.|++++|...|++.. .| +.. .|..+-.+|.+.|++++|...|++..+.
T Consensus 8 ~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELI--NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHH--HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHH--HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455 7888999999988765 33 455 7777777888889999999998886653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.86 E-value=1.9 Score=29.54 Aligned_cols=14 Identities=7% Similarity=0.047 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHhhc
Q 042210 127 CGEVDMARGIFYMS 140 (230)
Q Consensus 127 ~g~~~~A~~vf~~m 140 (230)
.++.++|.+.|++-
T Consensus 74 ~~d~~~A~~~~~~A 87 (138)
T 1klx_A 74 KKDLRKAAQYYSKA 87 (138)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 44445555444443
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.12 E-value=0.72 Score=38.88 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC-------C---CCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT-------Q---PSV-FLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~-------~---~~~-~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+.+-.+|. ..|++++|..++++.. . |++ .+||.|=..|...|++++|..+|++-
T Consensus 344 ~nLa~~y~--~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 344 YQAMGVCL--YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 55666677 7777777777776543 2 222 35677777777777777777777663
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=86.63 E-value=11 Score=32.69 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=21.6
Q ss_pred hHHHHHHHHhcC---CCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhC
Q 042210 37 LKYECKVFRKIT---QPSVFLWNTMIKGYSRID--SHKNGVLMYLDLLKS 81 (230)
Q Consensus 37 ~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~--~~~~a~~~~~~M~~~ 81 (230)
++++.+.++.+- +.+...|+----.+.+.+ ++++++..++.+.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 455555555443 333444444444444444 445555555555443
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.29 E-value=2.1 Score=35.91 Aligned_cols=86 Identities=3% Similarity=-0.097 Sum_probs=63.0
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC-------CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCC-
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT-------QPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLK-----SD-VRRD- 86 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~-------~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~-----~g-~~p~- 86 (230)
.+..+. +.|++++|.+++++.. .|+ ..+++.+...|...|++++|..++++... .| --|+
T Consensus 293 ~ie~~~--~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 293 KIEELK--AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHH--hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 355566 8899999999997653 222 24689999999999999999999998653 22 2232
Q ss_pred cccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 87 NYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 87 ~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
..+++.|-..|...|++ |..++....
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34677788888888888 666666554
No 210
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.21 E-value=1.8 Score=35.83 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=49.2
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCccc
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-----SDVRRDNYT 89 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-----~g~~p~~~t 89 (230)
.++..+. ..|+.++|...+.... +-+-..|-.+|.++.+.|+..+|++.|++..+ .|+.|+..+
T Consensus 176 ~~~~~~l--~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEI--ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556666 8888888887777655 44666889999999999999999999988754 488887644
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.35 E-value=0.23 Score=42.76 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=107.2
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCc
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIA 102 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~ 102 (230)
+.|=.+.. +.+++.+|.+-|= +..|...|..+|....+.|.+++-...++.-++..-.| ..=+.|+.+|++.++
T Consensus 58 s~LgkAqL--~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 58 SQLAKAQL--QKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 131 (624)
T ss_dssp SSHHHHTT--TSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCS
T ss_pred HHHHHHHH--ccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCc
Confidence 34444444 4455555444332 23455678889999999999988777765544443334 344689999999888
Q ss_pred h-hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC------------------------CChhhhHHHHHHhhh
Q 042210 103 G-SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE------------------------DDDGLHELIRIKAVD 157 (230)
Q Consensus 103 ~-a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~------------------------~~~~t~n~li~~~~~ 157 (230)
+ -.+=|-...+..-....=+-+-..|.++.|+-+|..+.. .+..||-..-.+|..
T Consensus 132 L~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd 211 (624)
T 3lvg_A 132 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 211 (624)
T ss_dssp SSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhC
Confidence 7 211111122343444455666677777777777776652 466788888888888
Q ss_pred cchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCcccccc
Q 042210 158 DDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGR 211 (230)
Q Consensus 158 ~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~ 211 (230)
.+-+++....--.-.+.||.- .. + +.-|.+.|-+++-..+++.
T Consensus 212 ~~EfrLAqicGLniIvhadeL--~e--l-------v~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 212 GKEFRLAQMCGLHIVVHADEL--EE--L-------INYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SCTTTTTTHHHHHHHCCSSCC--SG--G-------GSSSSTTCCCTTSTTTHHH
T ss_pred chHHHHHHHhcchhcccHHHH--HH--H-------HHHHHhCCCHHHHHHHHHH
Confidence 888888775444443555542 22 2 3378888888887776543
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=80.65 E-value=8.6 Score=24.39 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=34.9
Q ss_pred hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHH
Q 042210 104 SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRI 153 (230)
Q Consensus 104 a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~ 153 (230)
+..+++... ++.....+=..+.+.|++++|...|+.+.+ |+ ..|-.+|.
T Consensus 28 A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 28 VSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 666666555 566666667788899999999999998876 66 44544443
No 213
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=80.09 E-value=3 Score=30.82 Aligned_cols=163 Identities=7% Similarity=-0.122 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcCCCCh----hhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 5 KQIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKITQPSV----FLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~----~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
.++.+.+.+.|..++... .+.+...+ +.|+++-+..+++.-..++. ..++.+ ...++.|+.+ +++.
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L-~~A~~~~~~~----~v~~ 94 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAA--INNRIDLVKYYISKGAIVDQLGGDLNSTPL-HWATRQGHLS----MVVQ 94 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCBTTTTBCHH-HHHHHHTCHH----HHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHH--HhCCHHHHHHHHHcCCcchhhcCCcCCChh-HHHHHcCCHH----HHHH
Confidence 355677777776665432 45666667 88888888877776542221 122333 3344455544 4444
Q ss_pred HHhCCCCCCcc---cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhc-cCCCh-
Q 042210 78 LLKSDVRRDNY---TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMS-CEDDD- 145 (230)
Q Consensus 78 M~~~g~~p~~~---t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m-~~~~~- 145 (230)
+.+.|..|+.. -.+.+ ...+..|+. .+.+.+.-. +..-.+.|..+ +..+......+++.+. ..++.
T Consensus 95 Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 95 LMKYGADPSLIDGEGCSCI-HLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp HHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHHHHTTCCTTCC
T ss_pred HHHcCCCCcccCCCCCCHH-HHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHH-HHhCChHHHHHHHHhcCCCcchh
Confidence 45556555432 22333 333444555 444443322 22222333333 3334433333333332 22221
Q ss_pred ---hhhHHHHHHhhhcchhhhHHHHHHHhhhcCchh
Q 042210 146 ---GLHELIRIKAVDDDLHELFPEYLVQMLALPDTF 178 (230)
Q Consensus 146 ---~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~ 178 (230)
.-++.+. ..+..+..+..+-+.+.| ..|+..
T Consensus 173 ~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~~~~~ 206 (240)
T 3eu9_A 173 DKYHKNTALH-WAVLAGNTTVISLLLEAG-ANVDAQ 206 (240)
T ss_dssp CTTTCCCHHH-HHHHHTCHHHHHHHHHHT-CCTTCB
T ss_pred hccCCCcHHH-HHHHcCCHHHHHHHHHcC-CCCCCc
Confidence 1223332 223344566777777777 555533
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.02 E-value=9.7 Score=25.84 Aligned_cols=104 Identities=12% Similarity=-0.058 Sum_probs=75.4
Q ss_pred cCChHHHHHHHHhcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh----cCch--hhH
Q 042210 34 KGDLKYECKVFRKIT-QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR----DIAG--SLE 106 (230)
Q Consensus 34 ~~~~~~a~~~~~~m~-~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~----~~~~--a~~ 106 (230)
.++.++|.+.|.+.- .-+.... +=..|...+..++|.+.|++-.+.|. ...+..|=..|.. .++. |..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 357889999998765 3333344 55566667888889999999877653 3455555555555 5566 777
Q ss_pred HHhhhh---hHhHHHHHHHHHHh----cCCHHHHHHHHhhccC
Q 042210 107 KSCIVM---RVFVQNALISTYCL----CGEVDMARGIFYMSCE 142 (230)
Q Consensus 107 ~~~~~~---~~~~~~~li~~y~~----~g~~~~A~~vf~~m~~ 142 (230)
.+.... +...+..|=..|.. .++.++|.+.|+.-.+
T Consensus 83 ~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 777776 77888888888888 8999999999987654
No 215
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.80 E-value=6.6 Score=25.92 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=17.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.|+.....+.+.+|-|.+++..|.++|+-.+.
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45555555555555555555555555555443
No 216
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=79.54 E-value=6.1 Score=30.64 Aligned_cols=162 Identities=10% Similarity=0.006 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 042210 6 QIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVR 84 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~ 84 (230)
++.+.+.+.++...... .+.|...+ +.|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..
T Consensus 14 ~v~~lL~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~ 87 (285)
T 3kea_A 14 QLKSFLSSKDTFKADVHGHSASYYAI--ADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLD 87 (285)
T ss_dssp HHHHHHHSTTTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCC
T ss_pred HHHHHHHhCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCC
Confidence 33444444443322223 45566666 788888888887763322211112234444555665533 344455665
Q ss_pred CCcc---cHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCC-Ch-hhhHHHH
Q 042210 85 RDNY---TFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCED-DD-GLHELIR 152 (230)
Q Consensus 85 p~~~---t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~-~~-~t~n~li 152 (230)
|+.. -++.|..+ +..|+. ++.+++.-. +..-|.+.+...+..|+.+-++.+++.-..+ +. .-++.|.
T Consensus 88 ~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~ 166 (285)
T 3kea_A 88 DSQFDDKGNTALYYA-VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH 166 (285)
T ss_dssp TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHH
T ss_pred CCCcCCCCCcHHHHH-HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHH
Confidence 5432 23344443 445665 444444322 2222245566667788888888777765442 22 3344443
Q ss_pred HHhhhcchhhhHHHHHHHhhhcCc
Q 042210 153 IKAVDDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 153 ~~~~~~~~~~~~~~m~~~~~~~p~ 176 (230)
.+ +..+..+..+-+.+.| ..++
T Consensus 167 ~A-~~~g~~~~v~~Ll~~g-ad~n 188 (285)
T 3kea_A 167 IT-IKNGHVDMMILLLDYM-TSTN 188 (285)
T ss_dssp HH-HHTTCHHHHHHHHHHH-HHTC
T ss_pred HH-HHcChHHHHHHHHHcC-CCCC
Confidence 32 3445566777777766 4444
No 217
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.88 E-value=3.7 Score=27.12 Aligned_cols=55 Identities=11% Similarity=0.211 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHH
Q 042210 5 KQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKG 61 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~ 61 (230)
++-.+.+-...+.|++.+ .+.|++|- |.+++..|..+|+..+ ......|..++.-
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcR--RvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACR--RLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 333444444567899999 99999999 9999999999999887 3334457777643
No 218
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.32 E-value=4.6 Score=31.33 Aligned_cols=167 Identities=11% Similarity=-0.123 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCCCCcH-HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 5 KQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
.++.+.+.+.|..++... .+.+..-+ ..|+.+-+..+++.-. .+|..-++.|.. .+..|+.+-+..+ .+
T Consensus 44 ~~~v~~Ll~~g~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~L----l~ 116 (285)
T 3kea_A 44 VRLVCTLLNAGALKNLLENEFPLHQAA--TLEDTKIVKILLFSGLDDSQFDDKGNTALYY-AVDSGNMQTVKLF----VK 116 (285)
T ss_dssp HHHHHHHHHTTGGGSCCTTCCHHHHHT--TSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHH----HH
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHH----Hh
Confidence 356677788887777666 66667777 8889888888887543 233333444443 3455665544333 44
Q ss_pred CCCCCCcccH---HHHHHHhhhcCch--hhHHHhhhh---hHhHHHHHHHHHHhcCCHHHHHHHHhhccCC---ChhhhH
Q 042210 81 SDVRRDNYTF---PFLFKGFTRDIAG--SLEKSCIVM---RVFVQNALISTYCLCGEVDMARGIFYMSCED---DDGLHE 149 (230)
Q Consensus 81 ~g~~p~~~t~---~~ll~~~~~~~~~--a~~~~~~~~---~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~---~~~t~n 149 (230)
.|..|+.... .+.+...+..|+. ++.+++.-. +.....+.+..-++.|..+-++-+++.=..+ |..-++
T Consensus 117 ~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t 196 (285)
T 3kea_A 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196 (285)
T ss_dssp HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence 4655543321 2344445556666 444444333 2213455566677888888888888754333 333344
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhhcCchhh
Q 042210 150 LIRIKAVDDDLHELFPEYLVQMLALPDTFM 179 (230)
Q Consensus 150 ~li~~~~~~~~~~~~~~m~~~~~~~p~~~t 179 (230)
..+...+..+..++.+-+.+.| ..|+...
T Consensus 197 ~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~ 225 (285)
T 3kea_A 197 PDIKLAIDNKDIEMLQALFKYD-INIYSAN 225 (285)
T ss_dssp TTHHHHHHHTCHHHHHHHTTSC-BCSTTTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcC-CCCCCCC
Confidence 3222223344456666666666 5555443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=77.66 E-value=5.3 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 116 VQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 116 ~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
.|..+-..|.+.|++++|.+.|++..+
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666677777777777776543
No 220
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=77.56 E-value=26 Score=28.17 Aligned_cols=61 Identities=5% Similarity=0.055 Sum_probs=36.2
Q ss_pred ChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 36 DLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 36 ~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~-~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
+++++.++++.+- +.|...|+----...+.|. ++++++.++.+.+.... |...|+-.-..+
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3677777777665 5566666655555556666 46777777777665432 444454443333
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.90 E-value=11 Score=23.83 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=37.3
Q ss_pred hHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 042210 37 LKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSD 82 (230)
Q Consensus 37 ~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g 82 (230)
.++|..+|++.. +.++.....+=..+.+.|++++|...|+++....
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 689999998865 4445666667778888999999999999998753
No 222
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.60 E-value=8.4 Score=29.14 Aligned_cols=163 Identities=9% Similarity=-0.107 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCCCc---H-HHHHHHHhhhccCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 5 KQIHSQTIKLGLLTKPH---C-PKQTRYLLLYEKGDLKYECKVFRKITQ---PSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~---~-~~ll~~~~~~~~~~~~~a~~~~~~m~~---~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
.++.+.+.+.|..++.. . .+.|...+ +.|+.+-+..+++.-.. +|...++.+. ..+..|+.+ +++.
T Consensus 18 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~ 90 (285)
T 1wdy_A 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPVLRKKNGATPFL-LAAIAGSVK----LLKL 90 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHH
T ss_pred HHHHHHHHHcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCCHH----HHHH
Confidence 35667777888766533 2 45677777 88888888888776432 2222333343 334445544 4455
Q ss_pred HHhCCCCCCcc---cHHHHHHHhhhcCch--hhHHHhhhhhHh--------------HHHHHHHHHHhcCCHHHHHHHHh
Q 042210 78 LLKSDVRRDNY---TFPFLFKGFTRDIAG--SLEKSCIVMRVF--------------VQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 78 M~~~g~~p~~~---t~~~ll~~~~~~~~~--a~~~~~~~~~~~--------------~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
+.+.|..++.. -++.+.. .+..|+. .+.+++.-.++. ...+.+...++.|+.+-++.+++
T Consensus 91 Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 91 FLSKGADVNECDFYGFTAFME-AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp HHHTTCCTTCBCTTCCBHHHH-HHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCCCCccCcccCCHHHH-HHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 55667665433 2333433 4455565 444443322111 11245666677888888888887
Q ss_pred hccC----CChhhhHHHHHHhhh---cchhhhHHHHHHHhhhcCc
Q 042210 139 MSCE----DDDGLHELIRIKAVD---DDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 139 ~m~~----~~~~t~n~li~~~~~---~~~~~~~~~m~~~~~~~p~ 176 (230)
.... +|..-++.+..+... ....++.+.+.+.| ..++
T Consensus 170 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~ 213 (285)
T 1wdy_A 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVN 213 (285)
T ss_dssp TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSS
T ss_pred hcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCC
Confidence 6332 344445555444332 22356666666666 4444
No 223
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=75.53 E-value=4.5 Score=30.02 Aligned_cols=190 Identities=9% Similarity=-0.048 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
++.+.+.+.|..++... .+.+...+ +.|+.+-+..+++.-. .++...++.+. ..+..|+.+ +++.+.
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll 97 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAA--ENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKGHYE----VVQYLL 97 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTTCHH----HHHHHH
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHH--HhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCHH----HHHHHH
Confidence 45666777776655432 34555556 7778777777776533 22322333333 333445543 344444
Q ss_pred hCC-CCCC---cccHHHHHHHhhhcCch--hhHHHhhhhhH----hHHHHHHHHHHhcCCHHHHHHHHhhccCCCh---h
Q 042210 80 KSD-VRRD---NYTFPFLFKGFTRDIAG--SLEKSCIVMRV----FVQNALISTYCLCGEVDMARGIFYMSCEDDD---G 146 (230)
Q Consensus 80 ~~g-~~p~---~~t~~~ll~~~~~~~~~--a~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~---~ 146 (230)
+.| ..++ ..-.+.+.. .++.|+. .+.+++.-.++ ....+.+..-++.|+.+-++.+++.-..++. .
T Consensus 98 ~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 176 (237)
T 3b7b_A 98 SNGQMDVNCQDDGGWTPMIW-ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176 (237)
T ss_dssp TTTCCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT
T ss_pred hCCCCCcccCCCCCCCHHHH-HHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Confidence 444 3332 222233333 3344555 44343322210 1112234445566777777777765444332 2
Q ss_pred hhHHHHHHhhhcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCcccccccCCccCCccccccc
Q 042210 147 LHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREETPRVGNLEEGTPQEGRP 212 (230)
Q Consensus 147 t~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a~~~~g~~~~a~~i~~~~ 212 (230)
-++.+-.+ ...+..+.++-+.+.| ..++.....+...+. -.+..|..+.+.++...+
T Consensus 177 g~t~L~~A-~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~-------~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 177 GDSPLHIA-ARENRYDCVVLFLSRD-SDVTLKNKEGETPLQ-------CASLNSQVWSALQMSKAL 233 (237)
T ss_dssp CCCHHHHH-HHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHH-------HSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHhCCHhHHHHHHHcC-CCCCccCCCCCCHHH-------HHHHHHHHHHHHHHHHHh
Confidence 23343322 2344556666666666 444433322222222 334455555554444433
No 224
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=73.72 E-value=20 Score=25.57 Aligned_cols=84 Identities=6% Similarity=0.076 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHhcCCCC--------C-----cH-HHHHHHHhhhccCChHHHHHHHHhcC---------CCC-hhhH--
Q 042210 2 HQLKQIHSQTIKLGLLTK--------P-----HC-PKQTRYLLLYEKGDLKYECKVFRKIT---------QPS-VFLW-- 55 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~--------~-----~~-~~ll~~~~~~~~~~~~~a~~~~~~m~---------~~~-~~~y-- 55 (230)
+.|...|+...+.. |+ . .. ...-.++. +.|++++|...++... .|+ ...|
T Consensus 28 eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~--~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 28 DEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALA--GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 45666666665553 33 1 14 55666777 9999999999888743 343 4567
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCccc
Q 042210 56 --NTMIKGYSRIDSHKNGVLMYLDLLK-----SDVRRDNYT 89 (230)
Q Consensus 56 --n~li~~~~~~~~~~~a~~~~~~M~~-----~g~~p~~~t 89 (230)
...=.++...|++++|+..|++-.+ .|+.+....
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 7777788889999999999998643 456555433
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=73.30 E-value=24 Score=25.66 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=58.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 042210 62 YSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYM 139 (230)
Q Consensus 62 ~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~ 139 (230)
..+.|+++.|+++-+++ -+...|..|=+...+.|++ |++.|....| +..|.=.|.-.|+.++-.++-+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---HHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678999999988776 2566889999999899988 8888886663 33444455566777666655332
Q ss_pred --ccCCChhhhHHHHHHhhhcchhhhH
Q 042210 140 --SCEDDDGLHELIRIKAVDDDLHELF 164 (230)
Q Consensus 140 --m~~~~~~t~n~li~~~~~~~~~~~~ 164 (230)
........+.+.+-.+..+++.+++
T Consensus 86 A~~~g~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 86 AQTREDFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHCccHHHHHHHHHHcCCHHHHHHHH
Confidence 2223344454444333334444443
No 226
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.45 E-value=8 Score=29.25 Aligned_cols=144 Identities=7% Similarity=-0.074 Sum_probs=79.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc---cHHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPS----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY---TFPFLFK 95 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~---t~~~ll~ 95 (230)
.+.+...+ +.|+++.+..+++.-..++ ..-++. +...++.|+.+ +++.+.+.|..|+.. -.+.|.
T Consensus 6 ~~~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~- 77 (285)
T 1wdy_A 6 NHLLIKAV--QNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL- 77 (285)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-
T ss_pred chHHHHHH--HcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH-
Confidence 45666677 8999999999988754332 222333 44445556654 455556667665543 233343
Q ss_pred HhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChh-------------hhHHHHHHh
Q 042210 96 GFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDG-------------LHELIRIKA 155 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~-------------t~n~li~~~ 155 (230)
..+..|+. .+.+.+.-. +..-+ +.+...++.|+.+-++.+++.-..++.. -++.+..+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A- 155 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA- 155 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH-
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH-
Confidence 34455665 444444322 22212 2355567789999888888875544322 23333332
Q ss_pred hhcchhhhHHHHHHHhhhcCc
Q 042210 156 VDDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 156 ~~~~~~~~~~~m~~~~~~~p~ 176 (230)
+..+..+.++.+.+.....++
T Consensus 156 ~~~~~~~~v~~Ll~~~~~~~~ 176 (285)
T 1wdy_A 156 AEKGHVEVLKILLDEMGADVN 176 (285)
T ss_dssp HHHTCHHHHHHHHHTSCCCTT
T ss_pred HHcCCHHHHHHHHHhcCCCCC
Confidence 334556777777776224444
No 227
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=71.56 E-value=11 Score=26.98 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCC----------hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhc-
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGD----------LKYECKVFRKIT--QP-SVFLWNTMIKGYSRI- 65 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~----------~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~- 65 (230)
++|.+.++...+. .|+... ..+=.++. +.++ +++|...|++.- .| +...|..+=.+|...
T Consensus 19 eeA~~~~~~Ai~l--~P~~aea~~n~G~~l~--~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 19 EQIRQDAENTYKS--NPLDADNLTRWGGVLL--ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHH--HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 4455555555544 354333 33434444 5544 457888887754 44 445677777777665
Q ss_pred ----------CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc
Q 042210 66 ----------DSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD 100 (230)
Q Consensus 66 ----------~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~ 100 (230)
|++++|...|++-.+ +.|+...|...+..+-+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhC
Confidence 478888888877554 467777776666655543
No 228
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=70.68 E-value=6.7 Score=29.02 Aligned_cols=49 Identities=8% Similarity=-0.034 Sum_probs=21.6
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCh----hhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 122 STYCLCGEVDMARGIFYMSCEDDD----GLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 122 ~~y~~~g~~~~A~~vf~~m~~~~~----~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
...++.|+.+-++.+++.-..++. .-++.+.. .+..+..+.++.+.+.|
T Consensus 121 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH-AVENNSLSMVQLLLQHG 173 (241)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH-HHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH-HHHcCCHHHHHHHHHcC
Confidence 334455666666666554333221 12223322 22234445555555555
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=70.28 E-value=13 Score=26.40 Aligned_cols=74 Identities=9% Similarity=0.172 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcCCCCCcH-HHHHHHHhhhccC---ChHHHHHHHHhcC--C-C---ChhhHHHHHHHHHhcCChhHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC-PKQTRYLLLYEKG---DLKYECKVFRKIT--Q-P---SVFLWNTMIKGYSRIDSHKNGV 72 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~-~~ll~~~~~~~~~---~~~~a~~~~~~m~--~-~---~~~~yn~li~~~~~~~~~~~a~ 72 (230)
.+++-+....+.|- ++..+ -.+--+++ +.+ +++++..+|++.- . | .-..|+.-+ +|.+.|++++|.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv--~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv-~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLV--RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV-GNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHH--TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HHHHTSCHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH-HHHHccCHHHHH
Confidence 34444554444443 44444 44445555 766 5567877777654 2 3 112355444 668888888888
Q ss_pred HHHHHHHh
Q 042210 73 LMYLDLLK 80 (230)
Q Consensus 73 ~~~~~M~~ 80 (230)
+.++...+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888665
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.99 E-value=64 Score=29.21 Aligned_cols=116 Identities=11% Similarity=-0.003 Sum_probs=70.3
Q ss_pred HHHHHHhhhccCC-hHHHHHHHHhcC--CCChhh--HHHHHHHHHhcCC-hhHHHHHHHHHHh------CCCCCCcccH-
Q 042210 24 KQTRYLLLYEKGD-LKYECKVFRKIT--QPSVFL--WNTMIKGYSRIDS-HKNGVLMYLDLLK------SDVRRDNYTF- 90 (230)
Q Consensus 24 ~ll~~~~~~~~~~-~~~a~~~~~~m~--~~~~~~--yn~li~~~~~~~~-~~~a~~~~~~M~~------~g~~p~~~t~- 90 (230)
.++..+. -.|+ .+.|.++|+++. .|.... ..++|..+.+.++ --+|.++..+-.+ ....+.....
T Consensus 253 ~Ll~~~~--~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIA--ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHH--TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHc--ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3444454 5555 588999999987 343222 2334433333322 2235555544322 1222222111
Q ss_pred ------HHH----HHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 91 ------PFL----FKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 91 ------~~l----l~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
..| .+-|...|+. |..+-+... +-.+|-.|...|.+.|+++.|.-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112 3345566777 777666666 89999999999999999999999999997
No 231
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.53 E-value=15 Score=25.62 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh
Q 042210 73 LMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM 112 (230)
Q Consensus 73 ~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~ 112 (230)
+-++.+...++.|+.....+.+++|-+.+++ |.++++.++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444556667666666666666666666 656665555
No 232
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.83 E-value=5.6 Score=26.23 Aligned_cols=35 Identities=11% Similarity=-0.195 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHh
Q 042210 121 ISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKA 155 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~ 155 (230)
++.+...|++++|..+.+.+.-||+.+|-++-.+.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~r 81 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYR 81 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHh
Confidence 45677899999999999999999999999986543
No 233
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=68.10 E-value=8.8 Score=28.20 Aligned_cols=141 Identities=9% Similarity=-0.107 Sum_probs=64.2
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc---cHHHHHHHh
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY---TFPFLFKGF 97 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~---t~~~ll~~~ 97 (230)
.+...+ +.|+++....+++.-+ .+|..-++.|..+ +..|+.+ +++.+.+.|..++.. -++.|..+
T Consensus 9 ~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A- 80 (231)
T 3aji_A 9 MICNLA--YSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIA- 80 (231)
T ss_dssp HHHHHH--HHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHH-
T ss_pred hHHHHH--HhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHH-
Confidence 344455 6777777777776532 3333334444333 3444443 334444555544332 23333333
Q ss_pred hhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCC---ChhhhHHHHHHhhhcchhhhHHHH
Q 042210 98 TRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCED---DDGLHELIRIKAVDDDLHELFPEY 167 (230)
Q Consensus 98 ~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~---~~~t~n~li~~~~~~~~~~~~~~m 167 (230)
+..|+. .+.+.+.-. +.. ..+.+...++.|+.+-++.+++.=..+ |..-++.+..+. ..+..+.++.+
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~L 158 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA-AKGNLKMVHIL 158 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HHTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH-HcCCHHHHHHH
Confidence 334444 333333222 111 122344455667777777666643332 222333333222 23345566666
Q ss_pred HHHhhhcCc
Q 042210 168 LVQMLALPD 176 (230)
Q Consensus 168 ~~~~~~~p~ 176 (230)
.+.+ ..++
T Consensus 159 l~~g-~~~~ 166 (231)
T 3aji_A 159 LFYK-ASTN 166 (231)
T ss_dssp HHTT-CCSC
T ss_pred HhcC-CCcc
Confidence 6655 4443
No 234
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.37 E-value=37 Score=26.98 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccCCCh---hhhHHHHHHhhh------cchhhhHHHHHHHhhhcCc
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDD---GLHELIRIKAVD------DDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~---~t~n~li~~~~~------~~~~~~~~~m~~~~~~~p~ 176 (230)
...+.+|.=|...|+.++|.+-++++..|.. +...++..+.-. +-..+++..+.+.+.+.++
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 3456788999999999999999999987632 122222222221 2255667666666644333
No 235
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.53 E-value=7.8 Score=27.75 Aligned_cols=139 Identities=6% Similarity=-0.110 Sum_probs=80.2
Q ss_pred ccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc---cHHHHHHHhhhcCch--
Q 042210 33 EKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY---TFPFLFKGFTRDIAG-- 103 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~---t~~~ll~~~~~~~~~-- 103 (230)
..|+.+.+..++..-. .+|..-++.|..+ ++.|+.+ +++.+.+.|..|+.. -.+.+..+ +..|+.
T Consensus 14 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~ 87 (201)
T 3hra_A 14 NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYA-GAQGRTEI 87 (201)
T ss_dssp HTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHH
T ss_pred HhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHH
Confidence 7889999998887654 3333334455444 4556644 555555667666543 23444444 445665
Q ss_pred hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhc-cC---CChhhhHHHHHHhhhcc----hhhhHHHHHH
Q 042210 104 SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMS-CE---DDDGLHELIRIKAVDDD----LHELFPEYLV 169 (230)
Q Consensus 104 a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m-~~---~~~~t~n~li~~~~~~~----~~~~~~~m~~ 169 (230)
.+.+++.-. +..- .+.+...++.|+.+-++.+++.- .. +|..-++.+..+..... ..++.+-+.+
T Consensus 88 ~~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 88 LAYMLKHATPDLNKHNRYG-GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166 (201)
T ss_dssp HHHHHHHSCCCTTCCCTTS-CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred HHHHHhccCcccccccCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence 555553322 2111 12345566789999988888875 22 45555666655544332 3677887888
Q ss_pred HhhhcCchhh
Q 042210 170 QMLALPDTFM 179 (230)
Q Consensus 170 ~~~~~p~~~t 179 (230)
.| ..|+...
T Consensus 167 ~g-a~~~~~~ 175 (201)
T 3hra_A 167 NG-ADQSIKD 175 (201)
T ss_dssp TT-CCTTCCC
T ss_pred CC-CCCCccC
Confidence 77 5565443
No 236
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.39 E-value=10 Score=26.53 Aligned_cols=78 Identities=10% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCCCcH-HHHHHHHhhhccC-ChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH
Q 042210 17 LTKPHC-PKQTRYLLLYEKG-DLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTF 90 (230)
Q Consensus 17 ~~~~~~-~~ll~~~~~~~~~-~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~ 90 (230)
+++-.. ......|- +.. +.-+.++-++.+. .|+.....+.+.+|-+.+|+..|.++|+-.+.+ +.+....|
T Consensus 49 Et~EeFdaRy~~~F~--~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY 125 (152)
T 2y69_E 49 ETDEEFDARWVTYFN--KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIY 125 (152)
T ss_dssp CCHHHHHHHHHHHHT--CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHH
T ss_pred CcHHHHHHHHHHHcC--CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhH
Confidence 444445 55666666 665 6667777777665 788889999999999999999999999987664 23335568
Q ss_pred HHHHHHh
Q 042210 91 PFLFKGF 97 (230)
Q Consensus 91 ~~ll~~~ 97 (230)
..+++-.
T Consensus 126 ~y~lqEl 132 (152)
T 2y69_E 126 PYVIQEL 132 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777644
No 237
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.61 E-value=13 Score=27.28 Aligned_cols=168 Identities=4% Similarity=-0.207 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 5 KQIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKITQ---PSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 5 ~~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~~---~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
+.+.+.+.+.|..++... .+.+...+ ..|+.+-+..+++.-.. +|...++.+ ...+..|+.+-+..+++.-
T Consensus 26 ~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 26 HRLVNLFQQGGRELDIYNNLRQTPLHLAV--ITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCcccccCCCHHHHHH--HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHHcC
Confidence 334444445676655332 45666666 78888887777765432 232233333 3444566666555555443
Q ss_pred HhCCCCC---CcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCC---Ch
Q 042210 79 LKSDVRR---DNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCED---DD 145 (230)
Q Consensus 79 ~~~g~~p---~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~---~~ 145 (230)
...++.+ |..-.+.+.. .++.|+. .+.+++.-. +.....+.+...++.|+.+-++.+++.=..+ |.
T Consensus 103 ~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 181 (241)
T 1k1a_A 103 APGTLDLEARNYDGLTALHV-AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181 (241)
T ss_dssp CTTSCCTTCCCTTSCCHHHH-HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT
T ss_pred CCccccccccCcCCCcHHHH-HHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 3222222 2222333433 3345555 444443322 2122334566667889999888888864443 33
Q ss_pred hhhHHHHHHhhhcchhhhHHHHHHHhhhcCchh
Q 042210 146 GLHELIRIKAVDDDLHELFPEYLVQMLALPDTF 178 (230)
Q Consensus 146 ~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~ 178 (230)
.-++.+-.+ +..+..+.++.+.+.| ..|+..
T Consensus 182 ~g~t~L~~A-~~~~~~~~v~~Ll~~g-a~~~~~ 212 (241)
T 1k1a_A 182 SGSSALHSA-SGRGLLPLVRTLVRSG-ADSSLK 212 (241)
T ss_dssp TSCBHHHHH-HHHTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCHHHHH-HHcCCHHHHHHHHhcC-CCCCCc
Confidence 334444333 3345567788888877 555543
No 238
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.47 E-value=32 Score=23.37 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSV---FLWNTMIKGYSRIDS--HKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~---~~yn~li~~~~~~~~--~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
..+|.=|. ..|+.++|..-++++..|.. +++.++..+.-+.++ .+....++..+...|+-+ =..+.+|+
T Consensus 11 ~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is----~~q~~~Gf 84 (129)
T 2nsz_A 11 DMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT----IDQMKRGY 84 (129)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC----HHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC----HHHHHHHH
Confidence 67888899 99999999999999987743 334555555555432 356778888887776443 33455555
Q ss_pred hh
Q 042210 98 TR 99 (230)
Q Consensus 98 ~~ 99 (230)
.+
T Consensus 85 ~~ 86 (129)
T 2nsz_A 85 ER 86 (129)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 239
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.27 E-value=5.2 Score=26.34 Aligned_cols=35 Identities=11% Similarity=-0.240 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHh
Q 042210 121 ISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKA 155 (230)
Q Consensus 121 i~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~ 155 (230)
++.+...|++++|..+.+.+.-||+.+|-++-.+.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~r 80 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCEWH 80 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHh
Confidence 45677899999999999999999999999986644
No 240
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=61.19 E-value=28 Score=22.11 Aligned_cols=59 Identities=8% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC----C------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT----Q------PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~----~------~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 87 (230)
|=..+. +.|+++.|...|+... . +....|..+-.+|.+.|+++.|...+++..+ +.|+.
T Consensus 11 lG~~~~--~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 11 LGKVAY--TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHH--HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 334555 7888888888887643 1 2234677788888888888888888888655 34544
No 241
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=60.62 E-value=14 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=34.4
Q ss_pred hHhHHHHHHHHHHhc-----------CCHHHHHHHHhhccC--CChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 113 RVFVQNALISTYCLC-----------GEVDMARGIFYMSCE--DDDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 113 ~~~~~~~li~~y~~~-----------g~~~~A~~vf~~m~~--~~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
+...|..+=.+|.+. |++++|.+.|++..+ |+...|..-+.. ..++.+++-++..++
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~--~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM--TAKAPQLHAEAYKQG 148 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH--HHTHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHhCHhccCcccccc
Confidence 455566666666655 589999999997764 776655443332 234555555554443
No 242
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=60.25 E-value=28 Score=22.08 Aligned_cols=70 Identities=14% Similarity=-0.048 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHH
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 134 (230)
+-.+=..+.+.+++..|...|++-.+.--.++. .+.. ...++..|-.+|.+.|++++|.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------~~~~---------~~~i~~~L~~~~~~~g~~~~A~ 66 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------STID---------KVSVLDYLSYAVYQQGDLDKAL 66 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CSSC---------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------Cccc---------HHHHHHHHHHHHHHccCHHHHH
Confidence 334555666778888888888774332101000 0000 3566778888899999999999
Q ss_pred HHHhhccC--CCh
Q 042210 135 GIFYMSCE--DDD 145 (230)
Q Consensus 135 ~vf~~m~~--~~~ 145 (230)
..+++..+ |+.
T Consensus 67 ~~~~~al~l~P~~ 79 (104)
T 2v5f_A 67 LLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 99987754 654
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=59.49 E-value=43 Score=23.58 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=15.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042210 51 SVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDV 83 (230)
Q Consensus 51 ~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~ 83 (230)
+....-.+-.+|.+.|+..+|.+++.+--+.|+
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333333444445555555555555444444443
No 244
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=58.73 E-value=71 Score=25.83 Aligned_cols=118 Identities=6% Similarity=0.002 Sum_probs=77.1
Q ss_pred ccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhc-C-ch--h
Q 042210 33 EKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRID-SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRD-I-AG--S 104 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~-~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~-~-~~--a 104 (230)
+....++|.++++++- +.+...||.-=..+...+ ++++++.+++.+....-+ +...|+.--..+.+. + +. +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 4456678999998876 445566877666666667 599999999998865322 344555554444444 4 44 6
Q ss_pred hHHHhhhh-----hHhHHHHHHHHHHhcCCHH--------HHHHHHhhccC---CChhhhHHH
Q 042210 105 LEKSCIVM-----RVFVQNALISTYCLCGEVD--------MARGIFYMSCE---DDDGLHELI 151 (230)
Q Consensus 105 ~~~~~~~~-----~~~~~~~li~~y~~~g~~~--------~A~~vf~~m~~---~~~~t~n~l 151 (230)
.++++.+. +-..|+----.+.+.|..+ ++.+.++++.+ .|...|+--
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666 6666666555555555555 78888887765 466677754
No 245
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=58.59 E-value=6 Score=31.68 Aligned_cols=76 Identities=8% Similarity=-0.136 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKITQPSV-FLWNTMIKGYSRIDSHKNGVLMYLDLLKS 81 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~-~~yn~li~~~~~~~~~~~a~~~~~~M~~~ 81 (230)
++.+.+.+.|..++... .+.|...+ ..|+.+-+..+++.-..++. .-++. +..-+..|+.+-+..+++.-...
T Consensus 34 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~ 110 (364)
T 3ljn_A 34 DEVRRLIETGVSPTIQNRFGCTALHLAC--KFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALVEGAKER 110 (364)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHHHhcccc
Confidence 34555566665554322 33445555 66666666666655442222 22222 23334445555555555443333
Q ss_pred CCC
Q 042210 82 DVR 84 (230)
Q Consensus 82 g~~ 84 (230)
|..
T Consensus 111 ~~~ 113 (364)
T 3ljn_A 111 GQM 113 (364)
T ss_dssp TCC
T ss_pred CCC
Confidence 333
No 246
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.82 E-value=28 Score=24.47 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=47.5
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSV---FLWNTMIKGYSRIDS--HKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~---~~yn~li~~~~~~~~--~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
+.+|.=|. ..|+.++|...++++..|.. +++.++..++-+.++ .+.+..++..+...|+-+ -..+.+|+
T Consensus 13 ~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is----~~q~~~Gf 86 (152)
T 2ion_A 13 DMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT----IDQMKRGY 86 (152)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC----HHHHHHHH
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC----HHHHHHHH
Confidence 67888899 99999999999999987743 234555555555322 345777777777665443 33455555
Q ss_pred hh
Q 042210 98 TR 99 (230)
Q Consensus 98 ~~ 99 (230)
.+
T Consensus 87 ~~ 88 (152)
T 2ion_A 87 ER 88 (152)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 247
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=55.31 E-value=79 Score=25.30 Aligned_cols=114 Identities=10% Similarity=-0.044 Sum_probs=75.4
Q ss_pred hHHHHHHHHhcC---CCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch---hhHHH
Q 042210 37 LKYECKVFRKIT---QPSVFLWNTMIKGYSRID--SHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG---SLEKS 108 (230)
Q Consensus 37 ~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~--~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~---a~~~~ 108 (230)
++++..+++.+- +.+..+|+----.+.+.+ ++++++.+++.+.+..-+ |...|+----.....|.. +.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 557778887666666766 488999999999875422 445555555555556652 44555
Q ss_pred hhhh-----hHhHHHHHHHHHHhc--------------CCHHHHHHHHhhccC--C-ChhhhHHH
Q 042210 109 CIVM-----RVFVQNALISTYCLC--------------GEVDMARGIFYMSCE--D-DDGLHELI 151 (230)
Q Consensus 109 ~~~~-----~~~~~~~li~~y~~~--------------g~~~~A~~vf~~m~~--~-~~~t~n~l 151 (230)
+.+. |...|+..-..+.+. +.++++.+.++.... | |...|+-+
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~ 233 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 233 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5554 777787776666655 457788888776653 4 55678743
No 248
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.93 E-value=42 Score=27.31 Aligned_cols=11 Identities=18% Similarity=0.042 Sum_probs=5.2
Q ss_pred hhhHHHHHHHh
Q 042210 161 HELFPEYLVQM 171 (230)
Q Consensus 161 ~~~~~~m~~~~ 171 (230)
.++.+-+.+.|
T Consensus 324 ~~~v~~Ll~~g 334 (437)
T 1n11_A 324 IKLVKFLLQHQ 334 (437)
T ss_dssp SHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 44444444444
No 249
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=54.92 E-value=52 Score=26.10 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=45.5
Q ss_pred HHHHHHHhhhcc-----CChHHHHHHHHhcC--CCC--hhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCC--CCcc
Q 042210 23 PKQTRYLLLYEK-----GDLKYECKVFRKIT--QPS--VFLWNTMIKGYSRI-DSHKNGVLMYLDLLKSDVR--RDNY 88 (230)
Q Consensus 23 ~~ll~~~~~~~~-----~~~~~a~~~~~~m~--~~~--~~~yn~li~~~~~~-~~~~~a~~~~~~M~~~g~~--p~~~ 88 (230)
..+-..|. +. |+.++|++.|++.. .|+ ..++...-..+++. |+.+.+.+.+++=.+.... |+..
T Consensus 203 ~~LG~lY~--~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 203 NVLTKFYA--AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHH--HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHH--hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 45556666 63 88888888888865 553 56666677777774 8888888888887776655 6643
No 250
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=52.68 E-value=11 Score=21.91 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=19.2
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCcc
Q 042210 65 IDSHKNGVLMYLDLLKSD-VRRDNY 88 (230)
Q Consensus 65 ~~~~~~a~~~~~~M~~~g-~~p~~~ 88 (230)
..|++.|...|.+++..| |+|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 679999999999998765 666653
No 251
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=52.46 E-value=1.1e+02 Score=26.28 Aligned_cols=118 Identities=9% Similarity=-0.044 Sum_probs=81.8
Q ss_pred ccCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 33 EKGDLKYECKVFRKIT--QP-SVFLWNTMIKGYSRIDS----------HKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~--~~-~~~~yn~li~~~~~~~~----------~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
....-++|.+.++++- .| +...|+.-=..+.+.++ +++++..++.+.+..-+ +...|..---.+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3334567888888876 44 45567655444555555 89999999998764322 44456555556666
Q ss_pred cC--ch--hhHHHhhhh-----hHhHHHHHHHHHHhcC-CHHHHHHHHhhccC---CChhhhHHH
Q 042210 100 DI--AG--SLEKSCIVM-----RVFVQNALISTYCLCG-EVDMARGIFYMSCE---DDDGLHELI 151 (230)
Q Consensus 100 ~~--~~--a~~~~~~~~-----~~~~~~~li~~y~~~g-~~~~A~~vf~~m~~---~~~~t~n~l 151 (230)
.+ ++ +.+.++.+. +-..|+.---.+.+.| ..+++.+.++++.+ .|...|+-.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 77 55 667777776 6777887777788888 89999999998887 356677764
No 252
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=52.27 E-value=59 Score=22.89 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccC--CCh
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSCE--DDD 145 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~~--~~~ 145 (230)
|+.-+ +|.+.|++++|++.|+..-+ |+-
T Consensus 75 Y~LAv-~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 75 FYLAV-GNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHH-HHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHH-HHHHccCHHHHHHHHHHHHhcCCCC
Confidence 44333 56899999999999998865 643
No 253
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=52.02 E-value=11 Score=31.03 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhc
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKI 47 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m 47 (230)
++.+.+.+.|..|+... .+.|..-+ +.|+.+-+..+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g 70 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQNK 70 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHH--HHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhCC
Confidence 45666777777665432 44555556 777877777777653
No 254
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.89 E-value=36 Score=19.74 Aligned_cols=49 Identities=4% Similarity=0.035 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 042210 37 LKYECKVFRKIT-QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN 87 (230)
Q Consensus 37 ~~~a~~~~~~m~-~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 87 (230)
.++..+.+.+|- .-|..+-..++ -...|+.+.|...+-+|...+..|+.
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL--~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVL--EAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHH--TTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHH--HHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 345555555552 33333322232 23468889999999998888888864
No 255
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=47.57 E-value=38 Score=21.69 Aligned_cols=39 Identities=3% Similarity=-0.064 Sum_probs=32.2
Q ss_pred CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 042210 35 GDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVL 73 (230)
Q Consensus 35 ~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~ 73 (230)
.+.+.|.++++.++.+....|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 478999999999998888899999999987777665543
No 256
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.83 E-value=96 Score=24.80 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSV---FLWNTMIKGYSRID-SHKNGVLMYLDLLKSDV 83 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~---~~yn~li~~~~~~~-~~~~a~~~~~~M~~~g~ 83 (230)
..++.=|. ..|++++|..-++++..|.. +++.++..+.-+.. .-+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~--~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYL--HLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 67888888 99999999999999987642 22333333333321 22345566666665543
No 257
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.56 E-value=92 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=19.9
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
+...--..++.+.+.|+.++|..+|=+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34445556677788888888888776554
No 258
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=46.26 E-value=1.2e+02 Score=24.67 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=41.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCC----hhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCC
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPS----VFLWNTMIKGYSRIDS-HKNGVLMYLDLLKSDVR 84 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~----~~~yn~li~~~~~~~~-~~~a~~~~~~M~~~g~~ 84 (230)
.++|.=|. ..|++++|..-++++..|+ .+.+..+..++-+... -+.+-.++..+...|+-
T Consensus 16 ~~ii~EY~--~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 16 ETVVTEYL--NSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 67889999 9999999999999999885 2345555555544321 23466667777776653
No 259
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=45.67 E-value=1e+02 Score=23.73 Aligned_cols=21 Identities=0% Similarity=-0.040 Sum_probs=10.2
Q ss_pred HHHHHHhhhccCChHHHHHHHHh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRK 46 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~ 46 (230)
+.|..-+ ..|+.+-+..+++.
T Consensus 60 t~L~~A~--~~g~~~~v~~Ll~~ 80 (351)
T 3utm_A 60 TPLHLAA--GYNRVRIVQLLLQH 80 (351)
T ss_dssp CHHHHHH--HTTCHHHHHHHHHT
T ss_pred CHHHHHH--HcCCHHHHHHHHHc
Confidence 3444444 55555555555543
No 260
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=44.47 E-value=1.2e+02 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=29.1
Q ss_pred hHhHHHHHHHHHHh-----cCCHHHHHHHHhhccC--CC--hhhhHHHHHHhhh
Q 042210 113 RVFVQNALISTYCL-----CGEVDMARGIFYMSCE--DD--DGLHELIRIKAVD 157 (230)
Q Consensus 113 ~~~~~~~li~~y~~-----~g~~~~A~~vf~~m~~--~~--~~t~n~li~~~~~ 157 (230)
+-..|+.|-..|.+ .|+.++|++.|++-.+ |+ ..++...-..++.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 45577777777877 4888888888887654 53 4444445554443
No 261
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=44.33 E-value=84 Score=22.43 Aligned_cols=22 Identities=0% Similarity=-0.079 Sum_probs=12.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRK 46 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~ 46 (230)
.+.+...+ +.|+.+-+..+++.
T Consensus 26 ~t~L~~A~--~~g~~~~v~~Ll~~ 47 (223)
T 2f8y_A 26 ETALHLAA--RYSRSDAAKRLLEA 47 (223)
T ss_dssp CCHHHHHH--HTTCHHHHHHHHHT
T ss_pred CchHHHHH--HcCCHHHHHHHHHc
Confidence 33444445 56666666665554
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=44.17 E-value=44 Score=27.30 Aligned_cols=89 Identities=12% Similarity=-0.007 Sum_probs=54.5
Q ss_pred hHHHHHHHHH---hcCChhHHHHHHHHHHhC--C-CCCCcc--cHH----------------HHHHHhhhcCch--hhHH
Q 042210 54 LWNTMIKGYS---RIDSHKNGVLMYLDLLKS--D-VRRDNY--TFP----------------FLFKGFTRDIAG--SLEK 107 (230)
Q Consensus 54 ~yn~li~~~~---~~~~~~~a~~~~~~M~~~--g-~~p~~~--t~~----------------~ll~~~~~~~~~--a~~~ 107 (230)
.|..++..-. ..|+++.|...+++.... | +-|+.. .|. .++..+...|+. +...
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444332 247888888888776542 2 223221 111 223444555665 3333
Q ss_pred Hhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 108 SCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 108 ~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
...+. +...|-.||.+|.++|+..+|.+.|+...+
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333 788999999999999999999999988763
No 263
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.59 E-value=42 Score=21.46 Aligned_cols=41 Identities=15% Similarity=-0.065 Sum_probs=32.1
Q ss_pred CCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhHHHHH
Q 042210 128 GEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYL 168 (230)
Q Consensus 128 g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~~~m~ 168 (230)
.+.+.|+++++.++.++...|..++.+....+-..+++.+.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~ 91 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLR 91 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHc
Confidence 57899999999999988889999998887655555555443
No 264
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=41.04 E-value=51 Score=24.61 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCChh----hhHHHHHHhhhcchhhhHHHHHHHhhhcCchhhhhhhhhcccccCCccc
Q 042210 120 LISTYCLCGEVDMARGIFYMSCEDDDG----LHELIRIKAVDDDLHELFPEYLVQMLALPDTFMGEGLEVIPKSQAPREE 195 (230)
Q Consensus 120 li~~y~~~g~~~~A~~vf~~m~~~~~~----t~n~li~~~~~~~~~~~~~~m~~~~~~~p~~~t~~~l~~~~~~~~~~~a 195 (230)
.+...++.|+.+-++.+++.=..++.. -++.|..+ +..+..++++-+.+.| ..|+.....+...+. .
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~-------~ 231 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA-VEAQAASVLELLLKAG-ADPTARMYGGRTPLG-------S 231 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH-------H
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHH-HHcCCHHHHHHHHHcC-CCCcccccCCCCHHH-------H
Confidence 455666778888888888765543332 34455433 3345567788888877 666644333222222 2
Q ss_pred ccccCCccCCccccccccccCCCcc
Q 042210 196 TPRVGNLEEGTPQEGRPHEHSQDDM 220 (230)
Q Consensus 196 ~~~~g~~~~a~~i~~~~~~~~~~~~ 220 (230)
.+..|.. .+...+.+.|..++
T Consensus 232 A~~~~~~----~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 232 ALLRPNP----ILARLLRAHGAPEP 252 (282)
T ss_dssp HHTSSCH----HHHHHHHHTTCCCC
T ss_pred HHHcCCc----HHHHHHHHcCCCcC
Confidence 2233443 34555566666655
No 265
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=40.35 E-value=1.4e+02 Score=23.99 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccC-ChHHHHHHHHhcC---CCChhhHHHHHHHHHhc-C-ChhHHHHH
Q 042210 3 QLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKG-DLKYECKVFRKIT---QPSVFLWNTMIKGYSRI-D-SHKNGVLM 74 (230)
Q Consensus 3 ~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~-~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~-~-~~~~a~~~ 74 (230)
+|.++.+.+.... |+..+ +.-=..+. ..| .++++.++++.+- +.+...|+---..+.+. + ++++++.+
T Consensus 72 ~AL~lt~~~L~~n--P~~ytaWn~R~~iL~--~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 72 RALELTEIIVRMN--PAHYTVWQYRFSLLT--SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHhC--chhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3445555554442 44333 33222333 444 3556666665543 33344454444444433 3 55555555
Q ss_pred HHHHHh
Q 042210 75 YLDLLK 80 (230)
Q Consensus 75 ~~~M~~ 80 (230)
++.+.+
T Consensus 148 ~~k~L~ 153 (349)
T 3q7a_A 148 IHGSLL 153 (349)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 555543
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.52 E-value=98 Score=25.17 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=45.3
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSV---FLWNTMIKGYSRIDS--HKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~---~~yn~li~~~~~~~~--~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
+.+|.=|. ..|+.++|...++++..|.. +++.++..+.-+.++ .+....++..+...|+-+ =..+.+|+
T Consensus 221 ~~lL~EY~--~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls----~~q~~~Gf 294 (358)
T 3eiq_C 221 DMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT----IDQMKRGY 294 (358)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC----HHHHHHHH
T ss_pred HHHHHHhc--cCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC----HHHHHHHH
Confidence 66788888 88899999999998887753 234555555554333 345677777777765443 23455555
Q ss_pred hh
Q 042210 98 TR 99 (230)
Q Consensus 98 ~~ 99 (230)
.+
T Consensus 295 ~~ 296 (358)
T 3eiq_C 295 ER 296 (358)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 267
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.46 E-value=87 Score=21.46 Aligned_cols=8 Identities=0% Similarity=-0.247 Sum_probs=3.7
Q ss_pred hhHHHhhh
Q 042210 104 SLEKSCIV 111 (230)
Q Consensus 104 a~~~~~~~ 111 (230)
|.++++.+
T Consensus 40 a~ei~~~l 47 (145)
T 2fe3_A 40 ADDIYKAL 47 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 268
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=39.25 E-value=1.6e+02 Score=24.10 Aligned_cols=71 Identities=6% Similarity=-0.035 Sum_probs=41.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCchhhHHHhhhhhHhHHHHHHHHHHhcC
Q 042210 49 QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAGSLEKSCIVMRVFVQNALISTYCLCG 128 (230)
Q Consensus 49 ~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~li~~y~~~g 128 (230)
..+...|.++-..+...|++++|...+++....+ |+...| ..+=..+.-.|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~---------------------------~llG~~~~~~G 324 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNY---------------------------VLLGKVYEMKG 324 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHH---------------------------HHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHH---------------------------HHHHHHHHHCC
Confidence 4455666666555666677777777777766654 443222 22233445567
Q ss_pred CHHHHHHHHhhccC--CChhhh
Q 042210 129 EVDMARGIFYMSCE--DDDGLH 148 (230)
Q Consensus 129 ~~~~A~~vf~~m~~--~~~~t~ 148 (230)
+.++|.+.|++-.. |...||
T Consensus 325 ~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 325 MNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcChH
Confidence 77777777665543 555443
No 269
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=39.06 E-value=47 Score=30.07 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 27 RYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
+.+. +.|+++.|.++-++.. +.+..+|-.|..+|...|+++.|+-.++-+.
T Consensus 345 ~FLl--~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLL--NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHh--ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455 7899999999998866 4567899999999999999999999999873
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.66 E-value=1.5e+02 Score=23.58 Aligned_cols=76 Identities=12% Similarity=-0.000 Sum_probs=47.8
Q ss_pred HhcCChhHHHHH----HHHHHhCCCCCCcccHHHHHHHhhhcCch---hhHHHhhhh------------hHhHHHHHHHH
Q 042210 63 SRIDSHKNGVLM----YLDLLKSDVRRDNYTFPFLFKGFTRDIAG---SLEKSCIVM------------RVFVQNALIST 123 (230)
Q Consensus 63 ~~~~~~~~a~~~----~~~M~~~g~~p~~~t~~~ll~~~~~~~~~---a~~~~~~~~------------~~~~~~~li~~ 123 (230)
.+.|+...|-++ .+-..+.++++|..+..-++..+.....- -..+.+.+. |+.....+-..
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 345665555443 44456677888877777777666553211 112222222 77888888889
Q ss_pred HHhcCCHHHHHHHHh
Q 042210 124 YCLCGEVDMARGIFY 138 (230)
Q Consensus 124 y~~~g~~~~A~~vf~ 138 (230)
|.+.|++.+|+.=|-
T Consensus 144 ~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 144 LLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHH
Confidence 999999999988664
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.47 E-value=1.6e+02 Score=24.26 Aligned_cols=56 Identities=11% Similarity=-0.073 Sum_probs=44.9
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC----CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT----QP--SVFLWNTMIKGYSRIDSHKNGVLMYLDLLK 80 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~----~~--~~~~yn~li~~~~~~~~~~~a~~~~~~M~~ 80 (230)
..+-..|. +.|+.+.|.+.+.++. .+ -+..|-..|..+...+++..+...++....
T Consensus 135 ~~la~~~~--~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 135 INLGEYYA--QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHHHHHHH--HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66778888 9999999999999887 22 234577788888889999999999888654
No 272
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.37 E-value=67 Score=25.31 Aligned_cols=140 Identities=6% Similarity=-0.118 Sum_probs=79.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDN-YTFPFLFKGFT 98 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~-~t~~~ll~~~~ 98 (230)
.+.|..-+ ..|+++.+..+++.-. ..|..-++.|. ..+..|+.+- .+.+.+.|..++. .-++.| ...+
T Consensus 21 ~t~L~~Aa--~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L-~~A~ 92 (364)
T 3ljn_A 21 MEKIHVAA--RKGQTDEVRRLIETGVSPTIQNRFGCTALH-LACKFGCVDT----AKYLASVGEVHSLWHGQKPI-HLAV 92 (364)
T ss_dssp HHHHHHHH--HHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHCCHHH----HHHHHHHCCCCCCBTTBCHH-HHHH
T ss_pred CCHHHHHH--HcCCHHHHHHHHHcCCCccccCCCCCcHHH-HHHHcCCHHH----HHHHHHCCCCccccCCCCHH-HHHH
Confidence 55666677 8899999999987643 33333344444 4445566654 4444455555544 223334 4444
Q ss_pred hcCch--hhHHHhhhh----hHhH---------------------HHHHHHHHHhcC--CHHHHHHHHhhccCC---Chh
Q 042210 99 RDIAG--SLEKSCIVM----RVFV---------------------QNALISTYCLCG--EVDMARGIFYMSCED---DDG 146 (230)
Q Consensus 99 ~~~~~--a~~~~~~~~----~~~~---------------------~~~li~~y~~~g--~~~~A~~vf~~m~~~---~~~ 146 (230)
..|+. ++.+++... ++.. ..+.+...+..| ..+-++.+++.=..+ |..
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 55666 555555421 2211 123455566778 788888888764433 333
Q ss_pred hhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 147 LHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 147 t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
-++.|..+. ..+..++++.+.+.+
T Consensus 173 g~t~L~~A~-~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 173 DETPLMRAM-EFRNREALDLMMDTV 196 (364)
T ss_dssp SCCHHHHHH-HTTCHHHHHHHHHHC
T ss_pred CCCHHHHHH-HcCCHHHHHHHHhcc
Confidence 455554433 345567777777776
No 273
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.13 E-value=44 Score=19.43 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHh-CCCCCCcccHHHHHHHh-hhcCch
Q 042210 68 HKNGVLMYLDLLK-SDVRRDNYTFPFLFKGF-TRDIAG 103 (230)
Q Consensus 68 ~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~-~~~~~~ 103 (230)
.++|...|.+|.+ .+|.|+ .||.-.++.+ ++..++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDST-WSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCCCcc
Confidence 3678888888765 566665 5999999998 665544
No 274
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.02 E-value=34 Score=24.93 Aligned_cols=144 Identities=7% Similarity=-0.137 Sum_probs=78.7
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc---cHHHHHHH
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNY---TFPFLFKG 96 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~---t~~~ll~~ 96 (230)
.+.|...+ +.|+.+-+..+++.-. ..+...++.+. ..+..|+.+ +++.+.+.|..++.. -.+.+. .
T Consensus 12 ~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~ 83 (237)
T 3b7b_A 12 RSPLHAAA--EAGHVDICHMLVQAGANIDTCSEDQRTPLM-EAAENNHLE----AVKYLIKAGALVDPKDAEGSTCLH-L 83 (237)
T ss_dssp CCHHHHHH--HHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHH-H
T ss_pred CCHHHHHH--HcCcHHHHHHHHHcCCCcCccCCCCCCHHH-HHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHH-H
Confidence 34566666 8889888888877643 22333334444 344556654 444555666655432 233343 3
Q ss_pred hhhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCC---hhhhHHHHHHhhhcchhhhHH
Q 042210 97 FTRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDD---DGLHELIRIKAVDDDLHELFP 165 (230)
Q Consensus 97 ~~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~---~~t~n~li~~~~~~~~~~~~~ 165 (230)
.+..|+. .+.+++.-. +.. ..+.+...++.|+.+-++.+++.-..++ ..-.+.+..+ +..+..++++
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~~~ 161 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA-AFSGCVDIAE 161 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH-HHCCCHHHHH
Confidence 4455666 555555431 211 1233555667889888888887654433 2233444332 2345567777
Q ss_pred HHHHHhhhcCch
Q 042210 166 EYLVQMLALPDT 177 (230)
Q Consensus 166 ~m~~~~~~~p~~ 177 (230)
-+.+.| ..++.
T Consensus 162 ~Ll~~g-~~~~~ 172 (237)
T 3b7b_A 162 ILLAAK-CDLHA 172 (237)
T ss_dssp HHHTTT-CCTTC
T ss_pred HHHHcC-CCCCC
Confidence 777777 55553
No 275
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.75 E-value=28 Score=23.51 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=20.4
Q ss_pred HhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhhcchhhhHHHHHHHh
Q 042210 125 CLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVDDDLHELFPEYLVQM 171 (230)
Q Consensus 125 ~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~~~~~~~~~~m~~~~ 171 (230)
+..|+.+-++.+++.=.. +|..-++.+..+.. .+..+.++.+.+.|
T Consensus 43 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g 91 (156)
T 1bd8_A 43 MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEHG 91 (156)
T ss_dssp SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-cCcHHHHHHHHHcC
Confidence 555666655555554222 22223333333222 23445555555555
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.55 E-value=1.2e+02 Score=25.16 Aligned_cols=86 Identities=12% Similarity=-0.057 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CcccHHHHHHHhhhcCch--hhHHHhhhh-------hH------hH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR--DNYTFPFLFKGFTRDIAG--SLEKSCIVM-------RV------FV 116 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p--~~~t~~~ll~~~~~~~~~--a~~~~~~~~-------~~------~~ 116 (230)
++..+-.-|.+.|++++|.+.|.++...-..+ -...+-.+++.+...+++ +........ |. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 46678888899999999999999998753333 233566678888888888 665555554 22 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|..++. ...+++..|.+.|-+..
T Consensus 213 ~~gl~~--l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHC--LAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGG--GGTSCHHHHHHHHHHHH
T ss_pred HHHHHH--HHhChHHHHHHHHHHHh
Confidence 333332 34688888888777654
No 277
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=35.38 E-value=67 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=13.1
Q ss_pred HHHHHHHhhhccCChHHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRK 46 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~ 46 (230)
+.|+.+. +.|+++.+..+++.
T Consensus 13 ~~L~~A~---~~G~~~~v~~LL~~ 33 (269)
T 4b93_B 13 EKLLRAV---ADGDLEMVRYLLEW 33 (269)
T ss_dssp HHHHHHH---HTTCHHHHHHHHTC
T ss_pred hHHHHHH---HcCCHHHHHHHHHC
Confidence 4455543 66777777777654
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.06 E-value=1.8e+02 Score=23.58 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhccCCCh---hhhHHHHHHhh------hcchhhhHHHHHHHhhh
Q 042210 115 FVQNALISTYCLCGEVDMARGIFYMSCEDDD---GLHELIRIKAV------DDDLHELFPEYLVQMLA 173 (230)
Q Consensus 115 ~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~---~t~n~li~~~~------~~~~~~~~~~m~~~~~~ 173 (230)
...+.+|.=|...|+.++|.+.++++..|.. +...++..+.- ++...+++..+...+.+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 3457889999999999999999999988742 22233322222 12355666666666643
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.56 E-value=1.1e+02 Score=24.23 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=43.8
Q ss_pred HHHHHHHhhhccCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042210 23 PKQTRYLLLYEKGDLKYECKVFRKITQPSV---FLWNTMIKGYSRIDS--HKNGVLMYLDLLKSDVRRDNYTFPFLFKGF 97 (230)
Q Consensus 23 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~---~~yn~li~~~~~~~~--~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~ 97 (230)
..+|.=|. ..|+.++|...++++..|.. +++.++..+.-+.++ .+....++..+...|+-+ =..+.+|+
T Consensus 170 ~~lL~EY~--~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls----~~q~~~Gf 243 (307)
T 2zu6_B 170 DMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT----VDQMKRGY 243 (307)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC----HHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC----HHHHHHHH
Confidence 56777888 88888888888888887643 234445545544333 344667777777665433 23445555
Q ss_pred hh
Q 042210 98 TR 99 (230)
Q Consensus 98 ~~ 99 (230)
.+
T Consensus 244 ~~ 245 (307)
T 2zu6_B 244 ER 245 (307)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 280
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.08 E-value=37 Score=24.65 Aligned_cols=115 Identities=12% Similarity=-0.036 Sum_probs=64.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCH
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEV 130 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~ 130 (230)
.+...++.|+.+....+++.-...--.+|..-++.|..+ +..|+. .+.+++.-. +..-+ +.+...++.|+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~ 86 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXD 86 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHHTCH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHHHHHHHHHhCCCCCCcCCCCC-CHHHHHHHcCHH
Confidence 456677788988888777663332222344444445544 455666 444444322 22222 334556678899
Q ss_pred HHHHHHHhhccC---CChhhhHHHHHHhhhcchhhhHHHHHHHhhhcCc
Q 042210 131 DMARGIFYMSCE---DDDGLHELIRIKAVDDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 131 ~~A~~vf~~m~~---~~~~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~ 176 (230)
+-++.+++.-.. +|..-++.+..+. ..+..+.++.+.+.+ ..|+
T Consensus 87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~g-~~~~ 133 (231)
T 3aji_A 87 EIVKALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGG-ANPD 133 (231)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTT-CCTT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcC-CCCC
Confidence 888888875444 3333445554433 334566777777776 4444
No 281
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.78 E-value=87 Score=19.37 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042210 42 KVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLD 77 (230)
Q Consensus 42 ~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~ 77 (230)
+++++++ .|++.||+-+....-+..-..+++.+.++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455554 56666776666555444444445544444
No 282
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.72 E-value=1.8e+02 Score=22.34 Aligned_cols=144 Identities=12% Similarity=-0.087 Sum_probs=75.9
Q ss_pred HHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc---HHHHHHHh
Q 042210 25 QTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYT---FPFLFKGF 97 (230)
Q Consensus 25 ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t---~~~ll~~~ 97 (230)
.|..-+ +.|+.+-+..++++.. .+|....+.+..+... +.......+.+.+.+.|..++... .+.| ...
T Consensus 171 ~L~~A~--~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L-~~a 246 (337)
T 4g8k_A 171 ALMDAA--EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPL-ILA 246 (337)
T ss_dssp HHHHHH--HHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH-HHH
T ss_pred HHHHHH--HCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHH-HHH
Confidence 344455 7788888888886543 2333333344433332 222333445555677787766542 2233 334
Q ss_pred hhcCch--hhHHHhhhh------hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCChhhhHHHHHHhhhcchhhhHHHHHH
Q 042210 98 TRDIAG--SLEKSCIVM------RVFVQNALISTYCLCGEVDMARGIFYMSCEDDDGLHELIRIKAVDDDLHELFPEYLV 169 (230)
Q Consensus 98 ~~~~~~--a~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~t~n~li~~~~~~~~~~~~~~m~~ 169 (230)
+..|+. ...++..-. |..=+| -+..-++.|+.+-++-+++.=..+|..+ .+..+ +..+..++.+-+.+
T Consensus 247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~T-pL~~A~~~g~~~iv~~Ll~~GAd~n~~~--~L~~A-~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 247 VEKKHLGLVQRLLEQEHIEINDTDSDGKT-ALLLAVELKLKKIAELLCKRGASTDCGD--LVMTA-RRNYDHSLVKVLLS 322 (337)
T ss_dssp HHTTCHHHHHHHHTSTTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHTTSCSSTTCC--HHHHH-HHTTCHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHhcCCcccCcCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCCCC--HHHHH-HHcCCHHHHHHHHH
Confidence 455665 444444321 221122 3444567788888888877544455443 33322 33455677777888
Q ss_pred HhhhcCch
Q 042210 170 QMLALPDT 177 (230)
Q Consensus 170 ~~~~~p~~ 177 (230)
.| -.||.
T Consensus 323 ~G-A~~d~ 329 (337)
T 4g8k_A 323 HG-AKEDF 329 (337)
T ss_dssp TT-CCC--
T ss_pred Cc-CCCCC
Confidence 87 66664
No 283
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=30.14 E-value=2.3e+02 Score=23.18 Aligned_cols=67 Identities=6% Similarity=-0.125 Sum_probs=43.0
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHhhccC--CChhhhHHHHHHhh----hcchhhhHHHHHHHhhhcCchhhhhh
Q 042210 113 RVFVQNALISTYCLCGEVDMARGIFYMSCE--DDDGLHELIRIKAV----DDDLHELFPEYLVQMLALPDTFMGEG 182 (230)
Q Consensus 113 ~~~~~~~li~~y~~~g~~~~A~~vf~~m~~--~~~~t~n~li~~~~----~~~~~~~~~~m~~~~~~~p~~~t~~~ 182 (230)
+...|.++--.+...|++++|...+++... |+...|..+-..+. .++|.+.+++-++ ..|...|+.-
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHHH
Confidence 788888877777778999999999998876 65444433322222 3466666665444 3455445443
No 284
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.04 E-value=70 Score=21.48 Aligned_cols=46 Identities=7% Similarity=-0.060 Sum_probs=29.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
++..+...+..-.|.++++.+++.+-..+..|.--.|+.+.+.|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4555555566677888888887776555555665666666666654
No 285
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.73 E-value=62 Score=22.10 Aligned_cols=46 Identities=4% Similarity=-0.104 Sum_probs=26.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhhcCch
Q 042210 58 MIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTRDIAG 103 (230)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~~~~~ 103 (230)
++..+...++.-.|.++++.+++.+-..+..|.---|+.+.+.|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444445555566666776666665555555555555555555544
No 286
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.25 E-value=1.2e+02 Score=21.23 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=15.0
Q ss_pred HHhCCCCCCcccHHHHHHHhhhcCc-h-hhHHHhhh
Q 042210 78 LLKSDVRRDNYTFPFLFKGFTRDIA-G-SLEKSCIV 111 (230)
Q Consensus 78 M~~~g~~p~~~t~~~ll~~~~~~~~-~-a~~~~~~~ 111 (230)
+++.|++++..- ..++..+...+. + |.++++.+
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l 58 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEI 58 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHH
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHH
Confidence 344555554322 334444444432 2 55555554
No 287
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=28.76 E-value=1.1e+02 Score=21.69 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDL 78 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M 78 (230)
++.+.+.+.|..++... .+.+...+ ..|+.+-+..+++.-. .++...++.+..+ +..|+.+ +++.+
T Consensus 39 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~~~~L 111 (223)
T 2f8y_A 39 DAAKRLLEASADANIQDNMGRTPLHAAV--SADAQGVFQILIRNRATDLDARMHDGTTPLILA-ARLAVEG----MLEDL 111 (223)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH-HHHTCHH----HHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH-HHhCcHH----HHHHH
Confidence 45666777776665432 34555566 7777777777776532 2233333444333 3344443 34444
Q ss_pred HhCCCCCCc
Q 042210 79 LKSDVRRDN 87 (230)
Q Consensus 79 ~~~g~~p~~ 87 (230)
.+.|..++.
T Consensus 112 l~~g~~~~~ 120 (223)
T 2f8y_A 112 INSHADVNA 120 (223)
T ss_dssp HHTTCCTTC
T ss_pred HHcCCCCcC
Confidence 455655543
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.33 E-value=1.2e+02 Score=21.31 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=42.8
Q ss_pred HHHHHHHhhhcc-CChHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 23 PKQTRYLLLYEK-GDLKYECKVFRKITQPS-----VFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 23 ~~ll~~~~~~~~-~~~~~a~~~~~~m~~~~-----~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
-..|..+. +- ...+++.++|..|.... ...|-..-..+-..|++.+|.++|+.=++.+.+|
T Consensus 68 ~RyLklWl--~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 68 PRFISYCL--KFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHH--HHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHH--HHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555 22 22455888888887443 3457777777788899999999999877777777
No 289
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=27.14 E-value=16 Score=31.65 Aligned_cols=107 Identities=7% Similarity=-0.060 Sum_probs=72.9
Q ss_pred CCcH-HHHHHHHhhhccCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 042210 19 KPHC-PKQTRYLLLYEKGDLKYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFK 95 (230)
Q Consensus 19 ~~~~-~~ll~~~~~~~~~~~~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~ 95 (230)
|+.. ..+|.... +.|..++-...+...+ ..+...=+.|+-+|++.+++.+-.+++ -.||..-...+=+
T Consensus 82 Dps~y~eVi~~A~--~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAAN--TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTT--TSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 3444 77888888 8888888888887766 345555678888999988876544443 2366666666666
Q ss_pred HhhhcCch--hhHHHhhhh--------------------------hHhHHHHHHHHHHhcCCHHHHH
Q 042210 96 GFTRDIAG--SLEKSCIVM--------------------------RVFVQNALISTYCLCGEVDMAR 134 (230)
Q Consensus 96 ~~~~~~~~--a~~~~~~~~--------------------------~~~~~~~li~~y~~~g~~~~A~ 134 (230)
-|...|.. |+-+|..+. ++.||--+-.++...+++.-|.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 66666666 555555544 6777777777777777766554
No 290
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.60 E-value=1.6e+02 Score=20.25 Aligned_cols=8 Identities=13% Similarity=0.028 Sum_probs=4.1
Q ss_pred hhHHHhhh
Q 042210 104 SLEKSCIV 111 (230)
Q Consensus 104 a~~~~~~~ 111 (230)
|.++++.+
T Consensus 45 a~ei~~~l 52 (150)
T 2xig_A 45 PEEITHSI 52 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.37 E-value=1.8e+02 Score=21.55 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcH--HHHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 042210 2 HQLKQIHSQTIKLGLLTKPHC--PKQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSR 64 (230)
Q Consensus 2 ~~a~~~~~~m~~~g~~~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~ 64 (230)
.....+|..|.++|+-..... -..-..+- ..|++++|.++|+.-.+.+..-..-|...+..
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE--~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~ 158 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLE--NAQFFLEAKVLLELGAENNCRPYNRLLRSLSN 158 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
No 292
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=26.21 E-value=78 Score=21.25 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=31.5
Q ss_pred hCCCCCCcccHHHHHHHhhhcCch-hhHHHhhhh--hHhHHHHHHHH
Q 042210 80 KSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM--RVFVQNALIST 123 (230)
Q Consensus 80 ~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~--~~~~~~~li~~ 123 (230)
..+...+-.+|+.+|.++.+.+-. -..++.++- |+.++.+|++.
T Consensus 66 NAa~R~~g~sYs~fi~~L~k~~I~LNRKvLa~lAi~dp~~F~~lv~~ 112 (118)
T 2ftc_L 66 TAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAAL 112 (118)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHcCHHHHHHHHHH
Confidence 334444555788888888888776 666777776 88888888754
No 293
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.18 E-value=1.2e+02 Score=18.82 Aligned_cols=39 Identities=5% Similarity=-0.018 Sum_probs=29.8
Q ss_pred ccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHH
Q 042210 33 EKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNG 71 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a 71 (230)
.....++|..+++.++......|..++.++...+...-|
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 455778888888888888888888888888877654433
No 294
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=25.56 E-value=2.6e+02 Score=22.43 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=60.2
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCCcccHHHHHHHhhh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKITQPSVFLWNTMIKGYSRIDSHKNGVLMY----LDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~~~~~~~yn~li~~~~~~~~~~~a~~~~----~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
++..-|. +.+++++|.+++-. .. ..+.+.|....|-++- +-..+.++++|..+..-|+..+..
T Consensus 40 Ti~~Ry~--~~k~y~eAidLL~~----------GA-~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 40 LVAARYS--KQGNWAAAVDILAS----------VS-QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHH----------HH-HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHH--hhcCHHHHHHHHHH----------HH-HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 3444455 66666666665322 11 1233345555444443 445567777877777677666665
Q ss_pred cCch---hhHHHhhhh------------hHhHHHHHHHHHHhcCCHHHHHHHHh
Q 042210 100 DIAG---SLEKSCIVM------------RVFVQNALISTYCLCGEVDMARGIFY 138 (230)
Q Consensus 100 ~~~~---a~~~~~~~~------------~~~~~~~li~~y~~~g~~~~A~~vf~ 138 (230)
...- -..+.+.+. |+.....+=..|.+.+++.+|+.-|-
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5432 112222222 77777888889999999999988774
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.35 E-value=31 Score=25.13 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=20.5
Q ss_pred ccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHH
Q 042210 33 EKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMY 75 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~ 75 (230)
+.|+.+.+..+++.-. .+|..-++.|.. .+..|+.+-+..++
T Consensus 12 ~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll 57 (232)
T 2rfa_A 12 KENDVQALSKLLKFEGCEVHQRGAMGETALHI-AALYDNLEAAMVLM 57 (232)
T ss_dssp HTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHH-HHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCCHHHH-HHHcCCHHHHHHHH
Confidence 6677777777766521 233333344333 33445554444443
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.17 E-value=1.3e+02 Score=21.32 Aligned_cols=48 Identities=2% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 38 KYECKVFRKITQ-----PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 38 ~~a~~~~~~m~~-----~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
+++.++|..|.. .-...|-..-..+-..|++.+|.++|+.=++.+.+|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 447777877763 333457777777777899999999999877777777
No 297
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.32 E-value=2.4e+02 Score=21.50 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=8.4
Q ss_pred ccCChHHHHHHHHh
Q 042210 33 EKGDLKYECKVFRK 46 (230)
Q Consensus 33 ~~~~~~~a~~~~~~ 46 (230)
+.|+.+....++..
T Consensus 33 ~~g~~~~v~~ll~~ 46 (351)
T 3utm_A 33 RSGNEEKLMALLTP 46 (351)
T ss_dssp HHTCHHHHHHHCCT
T ss_pred HcCCHHHHHHHHHh
Confidence 56666666666554
No 298
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.10 E-value=87 Score=21.14 Aligned_cols=8 Identities=0% Similarity=-0.180 Sum_probs=3.2
Q ss_pred hhHHHhhh
Q 042210 104 SLEKSCIV 111 (230)
Q Consensus 104 a~~~~~~~ 111 (230)
|.++++.+
T Consensus 37 a~ei~~~l 44 (136)
T 1mzb_A 37 AEDVYKAL 44 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 299
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.79 E-value=91 Score=21.03 Aligned_cols=125 Identities=13% Similarity=-0.016 Sum_probs=60.6
Q ss_pred HHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhh
Q 042210 24 KQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRRDNYTFPFLFKGFTR 99 (230)
Q Consensus 24 ~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~~t~~~ll~~~~~ 99 (230)
..+...+ +.|+++.+..+++.-. ..+..-++.+. ..+..|+. ++++.+.+.|..|+....
T Consensus 10 ~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~--------- 73 (165)
T 3twr_A 10 RQLLEAA--KAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRV----SVVEYLLQHGADVHAKDK--------- 73 (165)
T ss_dssp HHHHHHH--HHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCT---------
T ss_pred HHHHHHH--HhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChH----HHHHHHHhcCCCCCccCC---------
Confidence 3344445 6778887777776433 22222233443 33344553 344445556665544321
Q ss_pred cCchhhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhhhHHHHHHhhhcchhhhHHHHHHHhhhcCc
Q 042210 100 DIAGSLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCE---DDDGLHELIRIKAVDDDLHELFPEYLVQMLALPD 176 (230)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~---~~~~t~n~li~~~~~~~~~~~~~~m~~~~~~~p~ 176 (230)
.|. +.+..-++.|+.+-++.+++.=.. +|..-++.+..+. ..+..+..+.+.+.| ..|+
T Consensus 74 ~g~----------------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g-a~~~ 135 (165)
T 3twr_A 74 GGL----------------VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA-AKGKYEICKLLLQHG-ADPT 135 (165)
T ss_dssp TSC----------------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH-HTTCHHHHHHHHHTT-CCTT
T ss_pred CCC----------------CHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcC-CCCc
Confidence 011 112333445666666555554333 3333344543332 334567777777777 5555
Q ss_pred hhhhhh
Q 042210 177 TFMGEG 182 (230)
Q Consensus 177 ~~t~~~ 182 (230)
......
T Consensus 136 ~~~~~g 141 (165)
T 3twr_A 136 KKNRDG 141 (165)
T ss_dssp CCCTTS
T ss_pred ccCCCC
Confidence 444333
No 300
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.08 E-value=2.6e+02 Score=21.47 Aligned_cols=133 Identities=7% Similarity=-0.080 Sum_probs=59.1
Q ss_pred HHHHHHH-HhcCCCCCc---H-HHHHHHHhhhccCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 042210 6 QIHSQTI-KLGLLTKPH---C-PKQTRYLLLYEKGDLKYECKVFRKIT----QPSVFLWNTMIKGYSRIDSHKNGVLMYL 76 (230)
Q Consensus 6 ~~~~~m~-~~g~~~~~~---~-~~ll~~~~~~~~~~~~~a~~~~~~m~----~~~~~~yn~li~~~~~~~~~~~a~~~~~ 76 (230)
++.+.+. +.|..++.. - +.+.........+..+...+++-+-. .+|..-++.|. ..++.|..+.+..+++
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~-~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI-LAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHH-HHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHH-HHHHhhhhHHHHHHHH
Confidence 3445555 346655432 2 44444333114455565555543322 23333333443 4455666654444332
Q ss_pred HHHhCCCCCCcc---cHHHHHHHhhhcCch--hhHHHhhhhhHhHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 042210 77 DLLKSDVRRDNY---TFPFLFKGFTRDIAG--SLEKSCIVMRVFVQNALISTYCLCGEVDMARGIFYMSCEDD 144 (230)
Q Consensus 77 ~M~~~g~~p~~~---t~~~ll~~~~~~~~~--a~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~ 144 (230)
..|..++.. =.+.|..+ ++.|+. ++.+++.=.|+...+ .+..-++.|+.+-++-+++.=.+||
T Consensus 261 ---~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~-~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 261 ---QEHIEINDTDSDGKTALLLA-VELKLKKIAELLCKRGASTDCGD-LVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp ---STTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCC-HHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred ---hcCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC-HHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 234444332 22344444 345665 444443322222222 3444456777777766666433343
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.99 E-value=1.8e+02 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 55 WNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 55 yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
.+.+|.-|...|+.++|.+-++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777777788888877777764
No 302
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=22.81 E-value=81 Score=21.17 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=32.1
Q ss_pred CCCCCcccHHHHHHHhhhcCch-hhHHHhhhh--hHhHHHHHHHH
Q 042210 82 DVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM--RVFVQNALIST 123 (230)
Q Consensus 82 g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~--~~~~~~~li~~ 123 (230)
+...+-.+|+.+|.++.+.+-. -..++.++- |+.++..|++.
T Consensus 66 a~R~~glsYS~fi~gL~k~~I~LNRKvLA~lAi~dp~~F~~lv~~ 110 (118)
T 2ghj_A 66 AVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNK 110 (118)
T ss_dssp HHHTTTCCHHHHHHHHTTTTCCCCHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHhCHHHHHHHHHH
Confidence 3444455799999999998877 777777776 88899888854
No 303
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.51 E-value=1.8e+02 Score=21.22 Aligned_cols=117 Identities=8% Similarity=-0.101 Sum_probs=65.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHhhh--cCch--hhHHHhhhhhH-------------
Q 042210 59 IKGYSRIDSHKNGVLMYLDLLKSDVRRDN-------YTFPFLFKGFTR--DIAG--SLEKSCIVMRV------------- 114 (230)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~M~~~g~~p~~-------~t~~~ll~~~~~--~~~~--a~~~~~~~~~~------------- 114 (230)
+...++.|+.+....+++.+...|..++. .-.+.|..++.. .|+. ++.+++.-.+.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34455667777777777776666655443 334445554433 1554 44444332211
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHhhccCCChh----------------hhHHHHHHhhhcchhhhHHHHHH---Hhhh
Q 042210 115 --FVQNALISTYCLCGEVDMARGIFYMSCEDDDG----------------LHELIRIKAVDDDLHELFPEYLV---QMLA 173 (230)
Q Consensus 115 --~~~~~li~~y~~~g~~~~A~~vf~~m~~~~~~----------------t~n~li~~~~~~~~~~~~~~m~~---~~~~ 173 (230)
....+.+..-+..|+.+-++.+++.=..++.. -++.|..+. ..+..+..+.+.+ .| .
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~-~~~~~~~v~~Ll~~~~~g-a 163 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA-CTKQWDVVTYLLENPHQP-A 163 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH-HTTCHHHHHHHHHCSSCC-C
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH-HcCCHHHHHHHHhccccC-C
Confidence 12334566667788999888888864443332 445554433 3456678888888 56 4
Q ss_pred cCch
Q 042210 174 LPDT 177 (230)
Q Consensus 174 ~p~~ 177 (230)
.++.
T Consensus 164 ~~n~ 167 (256)
T 2etb_A 164 SLEA 167 (256)
T ss_dssp CTTC
T ss_pred CcCc
Confidence 4543
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.17 E-value=1.8e+02 Score=19.78 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhCC
Q 042210 70 NGVLMYLDLLKSD 82 (230)
Q Consensus 70 ~a~~~~~~M~~~g 82 (230)
.|.++++.+++.+
T Consensus 35 ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 35 TPDDILGEVRKTA 47 (145)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhC
Confidence 4444444444433
No 305
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.04 E-value=1.7e+02 Score=19.13 Aligned_cols=71 Identities=6% Similarity=-0.034 Sum_probs=43.1
Q ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCcccHHHHHHHhhhcCch-hhHHHhhhh
Q 042210 38 KYECKVFRKIT--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLK-SDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM 112 (230)
Q Consensus 38 ~~a~~~~~~m~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~ 112 (230)
++|..-+++.. .+|......++..+-.. ++.++++.++..+ .|+ +..++.-.++...+.|-+ ..+.|..|.
T Consensus 5 ~~al~~L~e~~~~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~~~w~~m~ 79 (119)
T 1wty_A 5 ARAVERLKAALERPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPEDPFWLEML 79 (119)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34444444332 34555666666666554 5566677666433 577 466788888888888877 335666665
No 306
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.80 E-value=3.4e+02 Score=22.42 Aligned_cols=86 Identities=6% Similarity=-0.178 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---cccHHHHHHHhhhcCch--hhHHHhhhh------------hHhH
Q 042210 56 NTMIKGYSRIDSHKNGVLMYLDLLKS--DVRRD---NYTFPFLFKGFTRDIAG--SLEKSCIVM------------RVFV 116 (230)
Q Consensus 56 n~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~---~~t~~~ll~~~~~~~~~--a~~~~~~~~------------~~~~ 116 (230)
-.|...|-..|++.+|..++.++... |.... ...|-..++.|...+++ |..+...+. ....
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45566677789999999999998653 32221 12455567788888888 766666653 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcc
Q 042210 117 QNALISTYCLCGEVDMARGIFYMSC 141 (230)
Q Consensus 117 ~~~li~~y~~~g~~~~A~~vf~~m~ 141 (230)
|...+..+...+++.+|.+-|.+.-
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6667777778888888887776664
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.78 E-value=1.6e+02 Score=22.13 Aligned_cols=61 Identities=7% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHhhhcc-CChHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042210 23 PKQTRYLLLYEK-GDLKYECKVFRKITQ-----PSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKSDVRR 85 (230)
Q Consensus 23 ~~ll~~~~~~~~-~~~~~a~~~~~~m~~-----~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~g~~p 85 (230)
--.|..+. +- ...+++.++|..|.. .-...|-..-..+-..|++.+|..+|+.=++.+.+|
T Consensus 117 ~RyLklWl--~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 117 VRYLRIWM--QYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHH--HHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHH--HHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555554 22 123567777777762 333457777777777888888888888866666666
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.66 E-value=2.3e+02 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHhhhccCChHHHHHHHHhc
Q 042210 26 TRYLLLYEKGDLKYECKVFRKI 47 (230)
Q Consensus 26 l~~~~~~~~~~~~~a~~~~~~m 47 (230)
+..|. +.|.+++|.++|+..
T Consensus 121 V~VCi--ek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICI--KNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHH--HhcchHHHHHHHHHH
Confidence 34455 555555555555544
No 309
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.42 E-value=83 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 042210 114 VFVQNALISTYCLCGEVDMARGIFYMSCE 142 (230)
Q Consensus 114 ~~~~~~li~~y~~~g~~~~A~~vf~~m~~ 142 (230)
...-|.|+.-|-.+|+++.|+++|+.++.
T Consensus 34 l~~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 34 LKQGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 44568899999999999999999998875
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.05 E-value=1.7e+02 Score=20.40 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 54 LWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 54 ~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
..+.+|.-|...|+.++|.+-++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 35678888888899999998888875
No 311
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.05 E-value=2.7e+02 Score=20.91 Aligned_cols=164 Identities=9% Similarity=-0.080 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCCCcH---HHHHHHHhhhccCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042210 6 QIHSQTIKLGLLTKPHC---PKQTRYLLLYEKGDLKYECKVFRKIT---QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLL 79 (230)
Q Consensus 6 ~~~~~m~~~g~~~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~m~---~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~ 79 (230)
++.+.+.+.|..++... .+.|..-+ ..|+.+-+..+++.-. .+|..-++.+..+ +..|+.+ +.+.+.
T Consensus 73 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll 145 (285)
T 3d9h_A 73 LSLRNLISQGWAVNIITADHVSPLHEAC--LGGHLSCVKILLKHGAQVNGVTADWHTPLFNA-CVSGSWD----CVNLLL 145 (285)
T ss_dssp HHHHHHHHTTCCSCEECTTCCCHHHHHH--HTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH-HHHTCHH----HHHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHH--HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcCHHH----HHHHHH
Confidence 44555666665554322 34445555 6677766666665432 2222223333333 3334443 333344
Q ss_pred hCCCCCCccc-HHHHHHHhhhcCch--hhHHHhhhh-----hHhHHHHHHHHHHhcCCHHHHHHHHhhccCCC--hhhhH
Q 042210 80 KSDVRRDNYT-FPFLFKGFTRDIAG--SLEKSCIVM-----RVFVQNALISTYCLCGEVDMARGIFYMSCEDD--DGLHE 149 (230)
Q Consensus 80 ~~g~~p~~~t-~~~ll~~~~~~~~~--a~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~vf~~m~~~~--~~t~n 149 (230)
+.|..++... -.+.+...+..|+. .+.+++.-. |..-. +.+..-++.|+.+-++.+++.=..++ ..-++
T Consensus 146 ~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t 224 (285)
T 3d9h_A 146 QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQDS 224 (285)
T ss_dssp HTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTB-CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBC
T ss_pred HCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Confidence 4454433221 11223333344444 333333211 11111 23444556677777777776533332 22233
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhhcCchhh
Q 042210 150 LIRIKAVDDDLHELFPEYLVQMLALPDTFM 179 (230)
Q Consensus 150 ~li~~~~~~~~~~~~~~m~~~~~~~p~~~t 179 (230)
.|..+ +..+..++++-+.+.| ..++...
T Consensus 225 ~L~~A-~~~~~~~~v~~Ll~~g-ad~~~~d 252 (285)
T 3d9h_A 225 PLHAV-VRTASEELACLLMDFG-ADTQAKN 252 (285)
T ss_dssp HHHHH-HHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred HHHHH-HHcCCHHHHHHHHHCC-CCCCCcC
Confidence 33322 2334456666666666 5555433
No 312
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...
Probab=21.00 E-value=75 Score=21.36 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=33.1
Q ss_pred HhCCCCCCcccHHHHHHHhhhcCch-hhHHHhhhh--hHhHHHHHHHH
Q 042210 79 LKSDVRRDNYTFPFLFKGFTRDIAG-SLEKSCIVM--RVFVQNALIST 123 (230)
Q Consensus 79 ~~~g~~p~~~t~~~ll~~~~~~~~~-a~~~~~~~~--~~~~~~~li~~ 123 (230)
+..+...+-.+|+.+|.++.+.+-. -..++.++- |+.++..|++.
T Consensus 65 INAa~R~~GlsYS~fi~gL~k~~I~LNRKvLA~lAi~dp~~F~~lv~~ 112 (118)
T 2zjr_N 65 INAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDA 112 (118)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHCTTCCCCSSHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHcCHHHHHHHHHH
Confidence 3444555666899999999988876 666666665 88889888864
No 313
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=20.83 E-value=1.4e+02 Score=23.21 Aligned_cols=108 Identities=8% Similarity=0.035 Sum_probs=62.3
Q ss_pred ccCChHHHHHHHHhc-C--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCcccHHHHHHHhhhcCch--hh
Q 042210 33 EKGDLKYECKVFRKI-T--QPSVFLWNTMIKGYSRIDSHKNGVLMYLDLLKS--DVRRDNYTFPFLFKGFTRDIAG--SL 105 (230)
Q Consensus 33 ~~~~~~~a~~~~~~m-~--~~~~~~yn~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~~~t~~~ll~~~~~~~~~--a~ 105 (230)
+.|++++|.+-...- + +.|...=..++.-+|-.|+++.|..-++...+. ...|...+|..+|.+=....++ +.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~ 88 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 88 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788888887776553 3 456666778888899999999998888776553 2334444444444433222111 11
Q ss_pred HHHhhhh-hHhHHHHHHHHHH--hcCCHHHHHHHHhhc
Q 042210 106 EKSCIVM-RVFVQNALISTYC--LCGEVDMARGIFYMS 140 (230)
Q Consensus 106 ~~~~~~~-~~~~~~~li~~y~--~~g~~~~A~~vf~~m 140 (230)
+.-.... ...-...|+.+.. ..|+.++|.++-+..
T Consensus 89 ~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 89 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 0000000 2333344555554 358888888776655
Done!