Query 042212
Match_columns 97
No_of_seqs 172 out of 1121
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 4.4E-22 9.6E-27 122.9 7.8 80 18-97 9-101 (103)
2 cd01807 GDX_N ubiquitin-like d 99.8 3.2E-19 6.8E-24 103.9 5.9 61 37-97 1-74 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.8 8.9E-19 1.9E-23 102.0 5.9 59 37-97 1-72 (74)
4 PTZ00044 ubiquitin; Provisiona 99.8 1.8E-18 4E-23 100.9 6.0 61 37-97 1-74 (76)
5 cd01797 NIRF_N amino-terminal 99.7 4.6E-18 1E-22 100.2 5.7 60 37-96 1-75 (78)
6 cd01810 ISG15_repeat2 ISG15 ub 99.7 6.8E-18 1.5E-22 98.3 5.7 59 39-97 1-72 (74)
7 cd01803 Ubiquitin Ubiquitin. U 99.7 1.5E-17 3.2E-22 96.6 6.1 61 37-97 1-74 (76)
8 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.8E-17 6.1E-22 95.4 6.1 61 37-97 1-74 (76)
9 cd01798 parkin_N amino-termina 99.7 2.3E-17 5E-22 95.0 5.4 57 39-95 1-70 (70)
10 KOG0003 Ubiquitin/60s ribosoma 99.7 4.8E-18 1E-22 104.4 1.1 61 37-97 1-74 (128)
11 cd01804 midnolin_N Ubiquitin-l 99.7 9.2E-17 2E-21 94.6 5.7 61 36-97 1-74 (78)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.1E-16 2.5E-21 93.2 5.4 57 37-93 2-71 (73)
13 cd01809 Scythe_N Ubiquitin-lik 99.7 1.4E-16 3.1E-21 91.6 5.6 59 37-95 1-72 (72)
14 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.7E-16 3.7E-21 93.7 5.8 60 36-95 2-76 (80)
15 cd01805 RAD23_N Ubiquitin-like 99.7 2.7E-16 5.9E-21 91.8 5.8 60 37-96 1-75 (77)
16 cd01794 DC_UbP_C dendritic cel 99.7 2.4E-16 5.2E-21 91.1 5.3 56 39-94 1-69 (70)
17 cd01808 hPLIC_N Ubiquitin-like 99.7 2.9E-16 6.2E-21 90.7 5.5 58 37-95 1-71 (71)
18 KOG0004 Ubiquitin/40S ribosoma 99.6 2.9E-16 6.2E-21 102.0 3.9 61 37-97 1-74 (156)
19 PF00240 ubiquitin: Ubiquitin 99.6 5.8E-16 1.2E-20 88.6 3.9 56 42-97 1-69 (69)
20 cd01790 Herp_N Homocysteine-re 99.6 6.5E-15 1.4E-19 86.9 4.6 59 36-94 1-78 (79)
21 cd01800 SF3a120_C Ubiquitin-li 99.5 1.6E-14 3.4E-19 84.5 4.7 54 44-97 5-71 (76)
22 cd01796 DDI1_N DNA damage indu 99.5 1.8E-14 3.9E-19 83.3 4.6 55 39-93 1-70 (71)
23 cd01763 Sumo Small ubiquitin-r 99.5 8.5E-14 1.8E-18 83.4 6.2 64 34-97 9-85 (87)
24 KOG0005 Ubiquitin-like protein 99.5 3.6E-14 7.7E-19 78.8 3.3 57 37-93 1-70 (70)
25 cd01812 BAG1_N Ubiquitin-like 99.5 1.3E-13 2.8E-18 79.1 4.7 57 37-94 1-70 (71)
26 TIGR00601 rad23 UV excision re 99.4 2.6E-13 5.7E-18 99.9 5.5 59 37-95 1-75 (378)
27 smart00213 UBQ Ubiquitin homol 99.3 2E-12 4.2E-17 72.2 4.0 51 37-88 1-64 (64)
28 cd01813 UBP_N UBP ubiquitin pr 99.3 6.4E-12 1.4E-16 73.3 4.9 56 37-93 1-72 (74)
29 KOG0010 Ubiquitin-like protein 99.2 9.9E-12 2.1E-16 93.0 4.1 60 36-96 15-87 (493)
30 KOG0011 Nucleotide excision re 99.2 1.5E-11 3.3E-16 88.3 4.9 59 37-95 1-74 (340)
31 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1.7E-11 3.6E-16 71.6 2.6 43 52-94 15-74 (75)
32 cd01799 Hoil1_N Ubiquitin-like 99.2 7.3E-11 1.6E-15 69.0 4.9 53 42-94 8-74 (75)
33 cd01793 Fubi Fubi ubiquitin-li 99.1 3.2E-11 7E-16 70.0 2.5 36 1-36 34-74 (74)
34 cd01814 NTGP5 Ubiquitin-like N 99.1 6.8E-11 1.5E-15 73.6 3.0 61 36-96 4-91 (113)
35 cd01769 UBL Ubiquitin-like dom 99.1 2.3E-10 5E-15 64.5 4.9 54 41-94 2-68 (69)
36 KOG0004 Ubiquitin/40S ribosoma 99.1 3.9E-11 8.4E-16 78.1 1.3 36 1-36 36-76 (156)
37 PF11976 Rad60-SLD: Ubiquitin- 99.0 1.8E-10 4E-15 66.2 3.3 58 37-94 1-72 (72)
38 cd01797 NIRF_N amino-terminal 99.0 1.3E-10 2.8E-15 68.4 2.2 35 1-35 38-77 (78)
39 cd01807 GDX_N ubiquitin-like d 99.0 1.3E-10 2.8E-15 67.4 1.9 33 1-33 36-73 (74)
40 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 1.7E-10 3.6E-15 67.4 2.0 30 2-31 40-74 (75)
41 KOG0001 Ubiquitin and ubiquiti 98.9 3E-09 6.5E-14 59.7 5.7 59 39-97 2-73 (75)
42 cd01802 AN1_N ubiquitin-like d 98.9 6.8E-10 1.5E-14 68.5 2.5 35 1-35 63-102 (103)
43 cd01810 ISG15_repeat2 ISG15 ub 98.9 7.4E-10 1.6E-14 64.2 2.5 35 1-35 34-73 (74)
44 cd01798 parkin_N amino-termina 98.9 7.6E-10 1.6E-14 63.5 1.9 32 1-32 34-70 (70)
45 PTZ00044 ubiquitin; Provisiona 98.9 1.1E-09 2.4E-14 63.5 2.4 35 1-35 36-75 (76)
46 PF13881 Rad60-SLD_2: Ubiquiti 98.9 7.8E-09 1.7E-13 64.6 6.0 60 37-96 3-89 (111)
47 cd01794 DC_UbP_C dendritic cel 98.8 1.6E-09 3.5E-14 62.4 1.8 31 1-31 34-69 (70)
48 cd01806 Nedd8 Nebb8-like ubiq 98.8 3E-09 6.5E-14 61.4 2.8 35 1-35 36-75 (76)
49 PF00240 ubiquitin: Ubiquitin 98.8 3.3E-09 7.1E-14 60.3 2.7 33 1-33 31-68 (69)
50 cd01808 hPLIC_N Ubiquitin-like 98.8 2.2E-09 4.8E-14 61.7 1.9 32 1-32 35-71 (71)
51 cd01800 SF3a120_C Ubiquitin-li 98.8 3.1E-09 6.8E-14 61.9 2.3 35 1-35 33-72 (76)
52 cd01795 USP48_C USP ubiquitin- 98.8 7.8E-09 1.7E-13 63.1 3.5 49 48-96 16-78 (107)
53 cd01791 Ubl5 UBL5 ubiquitin-li 98.8 3.7E-09 8.1E-14 61.4 2.1 31 1-31 37-72 (73)
54 cd01803 Ubiquitin Ubiquitin. U 98.7 6.3E-09 1.4E-13 60.0 2.4 35 1-35 36-75 (76)
55 cd01804 midnolin_N Ubiquitin-l 98.7 9.4E-09 2E-13 60.3 2.6 36 1-36 37-76 (78)
56 KOG0003 Ubiquitin/60s ribosoma 98.7 7.5E-10 1.6E-14 68.3 -3.2 36 1-36 36-76 (128)
57 PLN02560 enoyl-CoA reductase 98.6 4.8E-08 1E-12 70.5 5.0 56 37-92 1-80 (308)
58 cd01809 Scythe_N Ubiquitin-lik 98.6 1.6E-08 3.6E-13 57.7 1.9 32 1-32 36-72 (72)
59 cd01805 RAD23_N Ubiquitin-like 98.6 2.4E-08 5.2E-13 57.9 2.5 33 2-34 39-76 (77)
60 cd01796 DDI1_N DNA damage indu 98.6 1.6E-08 3.5E-13 58.2 1.6 30 1-30 35-70 (71)
61 PF11543 UN_NPL4: Nuclear pore 98.6 8E-08 1.7E-12 56.8 3.9 59 34-93 2-78 (80)
62 cd01788 ElonginB Ubiquitin-lik 98.6 9.9E-08 2.2E-12 59.5 4.4 58 38-95 2-80 (119)
63 KOG0005 Ubiquitin-like protein 98.6 1E-08 2.2E-13 57.2 -0.3 30 1-30 36-70 (70)
64 cd01789 Alp11_N Ubiquitin-like 98.5 2.1E-07 4.4E-12 55.4 4.9 56 38-93 3-79 (84)
65 cd01792 ISG15_repeat1 ISG15 ub 98.5 5E-08 1.1E-12 57.3 1.8 33 1-33 38-77 (80)
66 cd01763 Sumo Small ubiquitin-r 98.5 1.1E-07 2.3E-12 56.8 3.1 35 1-35 47-86 (87)
67 cd01814 NTGP5 Ubiquitin-like N 98.4 1E-07 2.2E-12 59.4 1.7 33 3-35 50-93 (113)
68 cd01790 Herp_N Homocysteine-re 98.4 1.1E-07 2.5E-12 56.0 1.5 30 2-31 42-78 (79)
69 cd01812 BAG1_N Ubiquitin-like 98.4 1.6E-07 3.6E-12 53.4 1.8 31 1-31 35-70 (71)
70 KOG0010 Ubiquitin-like protein 98.4 2E-07 4.3E-12 70.3 2.3 34 1-34 50-88 (493)
71 cd01801 Tsc13_N Ubiquitin-like 98.4 6.7E-07 1.5E-11 52.2 3.9 39 54-92 20-74 (77)
72 cd01795 USP48_C USP ubiquitin- 98.3 3.6E-07 7.8E-12 55.9 2.5 34 1-34 40-79 (107)
73 KOG4248 Ubiquitin-like protein 98.3 5.2E-07 1.1E-11 72.9 3.3 57 38-95 4-73 (1143)
74 cd01799 Hoil1_N Ubiquitin-like 98.3 4.1E-07 9E-12 53.0 1.9 30 1-31 38-74 (75)
75 PF14560 Ubiquitin_2: Ubiquiti 98.2 1.7E-06 3.6E-11 51.5 3.9 56 38-93 3-81 (87)
76 cd01813 UBP_N UBP ubiquitin pr 98.1 2.3E-06 5E-11 49.7 1.8 30 1-30 35-72 (74)
77 KOG3493 Ubiquitin-like protein 98.0 3.3E-06 7.3E-11 47.7 1.5 56 38-93 3-71 (73)
78 cd01811 OASL_repeat1 2'-5' oli 97.8 3.4E-05 7.3E-10 44.9 4.1 57 37-93 1-74 (80)
79 cd00196 UBQ Ubiquitin-like pro 97.8 6.2E-05 1.3E-09 39.7 4.8 52 43-94 4-68 (69)
80 cd01769 UBL Ubiquitin-like dom 97.8 2E-05 4.3E-10 44.0 2.4 31 1-31 33-68 (69)
81 smart00213 UBQ Ubiquitin homol 97.7 1.4E-05 3E-10 44.1 1.3 25 1-25 35-64 (64)
82 TIGR00601 rad23 UV excision re 97.7 2E-05 4.3E-10 58.5 2.3 34 1-34 39-77 (378)
83 KOG0001 Ubiquitin and ubiquiti 97.7 4.6E-05 9.9E-10 42.3 3.1 34 1-34 35-73 (75)
84 PF08817 YukD: WXG100 protein 97.6 0.00013 2.9E-09 42.6 4.2 56 37-92 3-78 (79)
85 cd01789 Alp11_N Ubiquitin-like 97.6 7.9E-05 1.7E-09 44.2 3.0 31 1-31 38-80 (84)
86 PF00789 UBX: UBX domain; Int 97.5 0.00049 1.1E-08 40.1 5.9 59 35-93 5-81 (82)
87 PF11976 Rad60-SLD: Ubiquitin- 97.5 7.9E-05 1.7E-09 42.4 1.9 31 1-31 36-72 (72)
88 cd01770 p47_UBX p47-like ubiqu 97.3 0.00071 1.5E-08 39.7 5.0 55 36-90 4-75 (79)
89 KOG4248 Ubiquitin-like protein 97.3 0.00013 2.9E-09 59.5 2.1 34 1-35 38-76 (1143)
90 KOG0006 E3 ubiquitin-protein l 97.3 0.0002 4.3E-09 52.2 2.7 57 37-93 1-73 (446)
91 cd01767 UBX UBX (ubiquitin reg 97.3 0.0014 3E-08 38.0 5.8 56 36-92 2-74 (77)
92 smart00166 UBX Domain present 97.2 0.0012 2.7E-08 38.5 5.4 58 35-92 3-78 (80)
93 cd01772 SAKS1_UBX SAKS1-like U 97.2 0.0014 3E-08 38.4 5.3 57 36-92 4-77 (79)
94 KOG4495 RNA polymerase II tran 96.9 0.00065 1.4E-08 41.4 2.2 46 47-92 12-79 (110)
95 PF13019 Telomere_Sde2: Telome 96.8 0.0043 9.3E-08 41.2 5.3 61 37-97 1-86 (162)
96 cd01774 Faf1_like2_UBX Faf1 ik 96.6 0.01 2.2E-07 35.3 5.6 59 35-93 3-83 (85)
97 cd01801 Tsc13_N Ubiquitin-like 96.5 0.0021 4.5E-08 37.3 2.2 29 1-29 39-74 (77)
98 KOG1639 Steroid reductase requ 96.5 0.0031 6.7E-08 44.6 3.4 56 37-92 1-76 (297)
99 KOG1769 Ubiquitin-like protein 96.2 0.023 5.1E-07 34.7 5.4 60 36-95 20-92 (99)
100 cd01811 OASL_repeat1 2'-5' oli 96.1 0.0048 1E-07 35.9 2.2 32 4-35 38-79 (80)
101 KOG0011 Nucleotide excision re 96.1 0.0033 7.1E-08 45.9 1.8 34 2-35 39-77 (340)
102 PF14560 Ubiquitin_2: Ubiquiti 96.1 0.0045 9.7E-08 36.6 2.0 32 1-32 39-83 (87)
103 PF13881 Rad60-SLD_2: Ubiquiti 96.0 0.0095 2.1E-07 37.2 3.2 32 3-34 48-90 (111)
104 COG5417 Uncharacterized small 95.8 0.032 6.9E-07 32.5 4.8 52 41-92 11-80 (81)
105 PF11470 TUG-UBL1: GLUT4 regul 95.7 0.016 3.6E-07 32.8 3.1 50 43-92 3-65 (65)
106 cd01771 Faf1_UBX Faf1 UBX doma 95.4 0.087 1.9E-06 30.9 5.8 59 35-93 3-78 (80)
107 PF08337 Plexin_cytopl: Plexin 95.3 0.015 3.2E-07 45.2 2.8 59 37-95 190-289 (539)
108 PF10302 DUF2407: DUF2407 ubiq 95.2 0.019 4.1E-07 35.0 2.5 35 48-82 13-64 (97)
109 PF15044 CLU_N: Mitochondrial 95.0 0.017 3.8E-07 33.6 1.9 43 53-95 1-58 (76)
110 cd01773 Faf1_like1_UBX Faf1 ik 94.8 0.18 3.8E-06 29.9 5.9 60 35-94 4-80 (82)
111 PF10790 DUF2604: Protein of U 94.6 0.067 1.5E-06 30.4 3.5 51 45-95 4-71 (76)
112 PF09379 FERM_N: FERM N-termin 94.2 0.11 2.4E-06 29.7 3.9 55 41-95 1-75 (80)
113 cd01788 ElonginB Ubiquitin-lik 93.8 0.073 1.6E-06 33.5 2.7 32 1-32 37-80 (119)
114 PF14453 ThiS-like: ThiS-like 93.1 0.31 6.8E-06 26.9 4.3 49 37-95 1-56 (57)
115 PLN02560 enoyl-CoA reductase 92.0 0.12 2.7E-06 37.5 2.3 28 2-29 41-80 (308)
116 KOG1872 Ubiquitin-specific pro 92.0 0.2 4.4E-06 38.3 3.4 56 38-94 5-74 (473)
117 cd00196 UBQ Ubiquitin-like pro 91.7 0.15 3.3E-06 26.0 2.0 31 1-31 33-68 (69)
118 cd06409 PB1_MUG70 The MUG70 pr 91.4 0.86 1.9E-05 27.2 5.1 30 38-67 2-31 (86)
119 KOG0013 Uncharacterized conser 90.8 0.32 6.9E-06 33.8 3.2 49 45-93 155-216 (231)
120 PF10209 DUF2340: Uncharacteri 90.6 0.2 4.4E-06 31.8 2.0 23 71-93 81-106 (122)
121 KOG4583 Membrane-associated ER 90.4 0.2 4.4E-06 37.0 2.0 47 36-82 9-72 (391)
122 smart00295 B41 Band 4.1 homolo 90.3 1.7 3.7E-05 28.6 6.4 33 35-67 2-34 (207)
123 KOG2086 Protein tyrosine phosp 89.7 0.27 5.8E-06 36.8 2.2 55 36-90 305-376 (380)
124 KOG3206 Alpha-tubulin folding 89.4 0.55 1.2E-05 32.6 3.4 45 49-93 15-79 (234)
125 PRK06437 hypothetical protein; 89.0 1.9 4.1E-05 24.2 5.0 44 45-93 9-61 (67)
126 COG5227 SMT3 Ubiquitin-like pr 88.3 0.77 1.7E-05 27.8 3.1 55 37-91 25-92 (103)
127 TIGR02958 sec_mycoba_snm4 secr 86.6 1.9 4E-05 33.0 5.1 57 38-95 4-80 (452)
128 KOG0006 E3 ubiquitin-protein l 85.7 0.61 1.3E-05 34.5 2.1 31 1-31 39-74 (446)
129 PRK08364 sulfur carrier protei 85.4 4.8 0.0001 22.6 5.8 51 37-93 5-64 (70)
130 PRK06488 sulfur carrier protei 84.9 2.9 6.3E-05 23.0 4.2 51 37-94 1-60 (65)
131 PF11620 GABP-alpha: GA-bindin 83.0 3.1 6.6E-05 24.9 3.9 48 48-95 4-64 (88)
132 PF02824 TGS: TGS domain; Int 81.7 4.1 9E-05 22.2 3.9 48 39-93 1-59 (60)
133 PF11069 DUF2870: Protein of u 81.0 1.4 3E-05 26.9 2.0 29 67-96 5-33 (98)
134 KOG1872 Ubiquitin-specific pro 80.9 1.5 3.3E-05 33.7 2.6 33 1-33 39-76 (473)
135 PRK07440 hypothetical protein; 80.5 5.4 0.00012 22.6 4.2 52 36-93 4-64 (70)
136 PRK08053 sulfur carrier protei 79.4 6.3 0.00014 21.8 4.3 52 37-94 1-61 (66)
137 PRK07696 sulfur carrier protei 79.3 6 0.00013 22.1 4.2 51 37-93 1-61 (67)
138 PLN02799 Molybdopterin synthas 78.6 8.1 0.00018 22.1 4.7 43 47-94 19-77 (82)
139 PRK06944 sulfur carrier protei 76.9 9.7 0.00021 20.7 4.5 52 37-94 1-60 (65)
140 COG2029 Uncharacterized conser 75.8 1.2 2.6E-05 29.9 0.6 36 61-96 8-43 (189)
141 cd01760 RBD Ubiquitin-like dom 75.2 5.2 0.00011 22.9 3.2 29 39-67 2-30 (72)
142 PF06234 TmoB: Toluene-4-monoo 74.9 3.9 8.4E-05 24.4 2.6 46 49-94 17-83 (85)
143 cd00565 ThiS ThiaminS ubiquiti 73.5 7.6 0.00016 21.3 3.5 47 45-94 5-60 (65)
144 cd01787 GRB7_RA RA (RAS-associ 72.8 5.3 0.00011 23.8 2.8 30 38-67 4-33 (85)
145 smart00455 RBD Raf-like Ras-bi 70.7 8 0.00017 21.9 3.2 29 39-67 2-30 (70)
146 PRK05659 sulfur carrier protei 70.6 14 0.0003 20.2 4.1 52 37-94 1-61 (66)
147 PRK06083 sulfur carrier protei 70.5 12 0.00026 22.0 4.0 52 36-93 18-78 (84)
148 PRK05863 sulfur carrier protei 70.1 11 0.00023 20.8 3.6 51 37-94 1-60 (65)
149 TIGR01683 thiS thiamine biosyn 69.5 11 0.00024 20.6 3.6 47 45-94 4-59 (64)
150 PF14836 Ubiquitin_3: Ubiquiti 69.2 16 0.00034 21.9 4.3 49 47-95 14-80 (88)
151 cd00754 MoaD Ubiquitin domain 66.4 16 0.00034 20.4 3.9 42 48-94 17-75 (80)
152 PF02196 RBD: Raf-like Ras-bin 62.4 11 0.00024 21.3 2.7 29 39-67 3-31 (71)
153 smart00666 PB1 PB1 domain. Pho 61.6 27 0.00058 19.6 4.5 51 38-92 3-55 (81)
154 PF14732 UAE_UbL: Ubiquitin/SU 60.5 8 0.00017 22.8 2.0 17 76-92 50-66 (87)
155 COG5100 NPL4 Nuclear pore prot 59.3 21 0.00046 27.5 4.4 57 37-94 1-78 (571)
156 TIGR01682 moaD molybdopterin c 59.2 31 0.00067 19.5 4.3 47 48-94 17-75 (80)
157 PF04017 DUF366: Domain of unk 58.4 3.5 7.5E-05 28.0 0.1 34 63-96 7-40 (183)
158 PF02597 ThiS: ThiS family; I 58.0 19 0.00041 19.9 3.2 45 48-94 13-72 (77)
159 cd01818 TIAM1_RBD Ubiquitin do 57.5 23 0.0005 20.7 3.4 28 40-67 3-30 (77)
160 PF00794 PI3K_rbd: PI3-kinase 57.3 15 0.00033 22.1 2.9 60 36-95 16-102 (106)
161 COG2104 ThiS Sulfur transfer p 56.5 35 0.00075 19.3 4.5 51 37-93 3-62 (68)
162 cd06407 PB1_NLP A PB1 domain i 56.2 12 0.00026 21.9 2.2 23 45-67 8-30 (82)
163 PF04023 FeoA: FeoA domain; I 55.5 19 0.00042 19.8 3.0 33 16-51 28-62 (74)
164 KOG0012 DNA damage inducible p 53.6 13 0.00029 27.9 2.5 49 45-93 11-74 (380)
165 PTZ00490 Ferredoxin superfamil 53.0 38 0.00083 22.0 4.3 31 33-63 32-62 (143)
166 PF02505 MCR_D: Methyl-coenzym 52.4 34 0.00073 22.6 4.0 74 6-82 30-120 (153)
167 KOG2689 Predicted ubiquitin re 51.5 24 0.00052 25.6 3.4 58 35-92 209-284 (290)
168 PF12480 DUF3699: Protein of u 49.7 48 0.001 19.2 4.0 31 25-55 15-45 (77)
169 PF02192 PI3K_p85B: PI3-kinase 49.1 12 0.00026 21.8 1.4 19 49-67 2-20 (78)
170 PF03931 Skp1_POZ: Skp1 family 48.9 5.9 0.00013 21.6 0.1 31 37-67 1-31 (62)
171 COG2164 Uncharacterized conser 46.0 9.8 0.00021 23.7 0.7 50 2-52 75-124 (126)
172 PF09014 Sushi_2: Beta-2-glyco 44.2 38 0.00082 20.2 3.0 34 1-34 6-43 (85)
173 KOG3391 Transcriptional co-rep 42.6 25 0.00055 22.9 2.2 28 69-96 110-137 (151)
174 TIGR01687 moaD_arch MoaD famil 42.3 66 0.0014 18.3 4.5 20 47-67 16-35 (88)
175 PRK11840 bifunctional sulfur c 42.3 52 0.0011 24.4 4.1 51 37-93 1-60 (326)
176 PRK09555 feoA ferrous iron tra 41.8 31 0.00067 19.7 2.4 27 16-42 26-54 (74)
177 cd01817 RGS12_RBD Ubiquitin do 41.2 61 0.0013 18.7 3.5 27 41-67 4-30 (73)
178 COG0299 PurN Folate-dependent 40.3 35 0.00077 23.5 2.8 44 18-67 126-170 (200)
179 TIGR03260 met_CoM_red_D methyl 39.2 67 0.0014 21.2 3.8 74 6-82 29-118 (150)
180 smart00143 PI3K_p85B PI3-kinas 39.2 19 0.00042 21.0 1.2 19 49-67 2-20 (78)
181 PF04126 Cyclophil_like: Cyclo 38.9 36 0.00078 21.2 2.5 30 37-67 1-30 (120)
182 PF14533 USP7_C2: Ubiquitin-sp 38.7 15 0.00032 25.2 0.7 22 46-67 132-153 (213)
183 TIGR02008 fdx_plant ferredoxin 35.0 86 0.0019 18.5 3.7 27 37-63 3-29 (97)
184 cd01777 SNX27_RA Ubiquitin dom 34.8 62 0.0013 19.3 2.9 30 38-67 3-32 (87)
185 PF14451 Ub-Mut7C: Mut7-C ubiq 34.7 96 0.0021 18.0 4.5 60 30-94 5-75 (81)
186 PF07971 Glyco_hydro_92: Glyco 33.8 54 0.0012 25.6 3.2 78 16-95 422-499 (502)
187 PF10882 bPH_5: Bacterial PH d 33.0 71 0.0015 18.6 3.1 48 16-65 51-99 (100)
188 cd01782 AF6_RA_repeat1 Ubiquit 33.0 91 0.002 19.5 3.5 34 34-67 21-56 (112)
189 smart00144 PI3K_rbd PI3-kinase 32.8 72 0.0016 19.4 3.1 32 36-67 17-49 (108)
190 KOG0728 26S proteasome regulat 32.8 34 0.00074 25.1 1.9 45 23-67 67-111 (404)
191 PF11859 DUF3379: Protein of u 32.8 56 0.0012 23.0 2.9 29 16-44 155-184 (232)
192 KOG1364 Predicted ubiquitin re 32.7 18 0.0004 27.0 0.5 53 37-89 278-349 (356)
193 PF06487 SAP18: Sin3 associate 32.6 56 0.0012 20.6 2.6 22 73-94 99-120 (120)
194 PF00564 PB1: PB1 domain; Int 32.3 94 0.002 17.3 3.5 29 38-67 3-32 (84)
195 cd06396 PB1_NBR1 The PB1 domai 30.2 51 0.0011 19.4 2.0 23 45-67 8-32 (81)
196 COG1918 FeoA Fe2+ transport sy 30.2 59 0.0013 18.7 2.3 27 16-42 27-55 (75)
197 PF15417 DUF4624: Domain of un 30.0 63 0.0014 20.4 2.5 44 49-92 53-104 (132)
198 COG2080 CoxS Aerobic-type carb 28.5 70 0.0015 21.2 2.6 25 43-67 7-32 (156)
199 KOG2982 Uncharacterized conser 27.7 54 0.0012 24.7 2.2 41 52-92 353-414 (418)
200 PRK10872 relA (p)ppGpp synthet 27.6 1.4E+02 0.003 24.7 4.7 55 38-94 405-465 (743)
201 PRK11347 antitoxin ChpS; Provi 27.2 1.3E+02 0.0028 17.6 3.4 40 16-67 21-60 (83)
202 COG4925 Uncharacterized conser 27.1 1.9E+02 0.0041 19.0 4.6 54 34-87 48-110 (166)
203 PLN02593 adrenodoxin-like ferr 27.0 1.4E+02 0.0031 18.3 3.8 26 38-63 2-27 (117)
204 KOG3073 Protein required for 1 26.9 1.2E+02 0.0026 21.3 3.6 21 35-57 93-113 (236)
205 KOG3076 5'-phosphoribosylglyci 26.9 61 0.0013 22.4 2.2 43 16-67 133-178 (206)
206 smart00314 RA Ras association 26.3 1.3E+02 0.0029 17.0 3.5 24 44-67 13-36 (90)
207 PF01376 Enterotoxin_b: Heat-l 26.1 51 0.0011 19.6 1.5 27 41-67 40-66 (102)
208 PF06200 tify: tify domain; I 25.7 63 0.0014 16.0 1.6 12 4-15 6-17 (36)
209 PF14847 Ras_bdg_2: Ras-bindin 25.2 65 0.0014 19.8 2.0 29 39-67 3-31 (105)
210 KOG3309 Ferredoxin [Energy pro 24.5 1.4E+02 0.0031 19.8 3.5 30 35-64 42-71 (159)
211 PF00788 RA: Ras association ( 23.8 1.5E+02 0.0032 16.6 3.5 20 48-67 18-37 (93)
212 PF13629 T2SS-T3SS_pil_N: Pilu 23.7 1.4E+02 0.0031 16.5 5.4 38 16-53 31-69 (72)
213 cd01768 RA RA (Ras-associating 23.7 1.5E+02 0.0032 16.7 3.6 22 46-67 12-33 (87)
214 KOG4572 Predicted DNA-binding 23.4 61 0.0013 27.5 2.0 39 45-83 3-56 (1424)
215 PRK12442 translation initiatio 23.2 1.8E+02 0.0039 17.4 4.3 28 30-57 33-61 (87)
216 PF13670 PepSY_2: Peptidase pr 23.1 1.6E+02 0.0034 16.7 3.3 24 34-57 53-76 (83)
217 PF09269 DUF1967: Domain of un 23.0 50 0.0011 18.5 1.1 34 55-92 29-62 (69)
218 cd06410 PB1_UP2 Uncharacterize 22.6 95 0.0021 18.7 2.3 27 41-67 17-43 (97)
219 PF05370 DUF749: Domain of unk 22.6 72 0.0016 19.1 1.7 26 68-93 28-53 (87)
220 cd00915 MD-1_MD-2 MD-1 and MD- 22.4 2.2E+02 0.0048 18.2 5.2 70 23-93 5-94 (130)
221 PF10407 Cytokin_check_N: Cdc1 21.0 1.8E+02 0.0039 16.7 4.1 21 47-67 3-23 (73)
222 PF13085 Fer2_3: 2Fe-2S iron-s 20.7 1.1E+02 0.0024 18.9 2.4 21 47-67 19-39 (110)
223 PF00111 Fer2: 2Fe-2S iron-sul 20.6 1.1E+02 0.0024 16.7 2.2 23 43-65 2-25 (78)
224 cd05992 PB1 The PB1 domain is 20.5 1.7E+02 0.0036 16.1 4.0 28 39-67 3-31 (81)
225 KOG0007 Splicing factor 3a, su 20.0 90 0.0019 23.0 2.2 25 43-67 289-314 (341)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.87 E-value=4.4e-22 Score=122.94 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=77.0
Q ss_pred cccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCccccccc
Q 042212 18 DYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNI 84 (97)
Q Consensus 18 ~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I 84 (97)
.+++.+-+++|+.+++++.|+|+||++.|++++++|++++||++||++|+ |+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 46788999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CCCCEEEEEEeeC
Q 042212 85 QKESTLHFVLRLS 97 (97)
Q Consensus 85 ~~~sti~l~~rl~ 97 (97)
++++++++++++|
T Consensus 89 ~~~stL~l~~~l~ 101 (103)
T cd01802 89 SEGCTLKLVLAMR 101 (103)
T ss_pred CCCCEEEEEEecC
Confidence 9999999999975
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=3.2e-19 Score=103.92 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=58.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|++++++|++++||+++|++|+ |+|++|+|+++|++|||++++++++++|.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 7999999999999999999999999999998 999999999999999999999999999864
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.77 E-value=8.9e-19 Score=102.04 Aligned_cols=59 Identities=27% Similarity=0.342 Sum_probs=56.2
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+. ++++++|++++||+++|++|+ |+|++|+|+.+|++|||++++|+|+++|++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLL 72 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 79999984 789999999999999999998 999999999999999999999999999985
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.76 E-value=1.8e-18 Score=100.85 Aligned_cols=61 Identities=30% Similarity=0.482 Sum_probs=59.1
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+++|+++++++++++||+++|++|+ |+|++|+|+.+|++|++++++++|+.++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 7999999999999999999999999999998 999999999999999999999999999875
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=4.6e-18 Score=100.21 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=57.2
Q ss_pred eeeEEECCCCCE-EEEe-ecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 37 MQIFVKTSTGKT-ITLE-VESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 37 m~i~vk~~~g~~-~~l~-v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
|+|+||+.+|++ ++++ +++++||+++|++|+ |+|++|+|+.+|++|||+++++|++++|+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999997 6895 899999999999999 99999999999999999999999999986
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=6.8e-18 Score=98.31 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=56.9
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+||++.|+++++++++++||+++|++|+ |+|++|+|+++|++|||++++++++++|++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 68999999999999999999999999998 999999999999999999999999999874
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.72 E-value=1.5e-17 Score=96.60 Aligned_cols=61 Identities=66% Similarity=0.832 Sum_probs=59.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|+++.+++++++||+++|++|+ |+|+.|+|+.+|++||+++++++++++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999998 999999999999999999999999999975
No 8
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.71 E-value=2.8e-17 Score=95.42 Aligned_cols=61 Identities=36% Similarity=0.524 Sum_probs=58.9
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+|++.+|+++.+++++++||+++|++|+ |+|+.|+|+.+|++|++++|+++|+++++|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999998 999999999999999999999999999875
No 9
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=2.3e-17 Score=95.03 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=55.0
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+||+..|+++++++++++||+++|++|+ |+|++|+|+.+|++|||++++++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999998 9999999999999999999999999875
No 10
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.8e-18 Score=104.36 Aligned_cols=61 Identities=69% Similarity=0.850 Sum_probs=58.9
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|++|++++.|++.+++++|++||.++|++|+ |+|++|+|+.|+++||++..+|+|+++|||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~ 74 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHh
Confidence 6899999999999999999999999999999 999999999999999999999999999875
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.68 E-value=9.2e-17 Score=94.56 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=57.8
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.|+|+||+..|++++++++++.||++||++|+ |+|+.|+|+ +|++|||++|++|+++..++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 48999999999999999999999999999997 999999999 99999999999999998763
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=1.1e-16 Score=93.20 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=55.2
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|.|+|++..|+++.++++|++||++||++|+ |+|+.|+|+.+|++|||++|++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999998 99999999999999999999999986
No 13
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=1.4e-16 Score=91.59 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=56.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+|+||+.+|+++++++++++||+++|++|+ |+|+.|+|+.+|++||+++|+++|++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 7899999999999999999999999999998 9999999999999999999999999875
No 14
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=1.7e-16 Score=93.69 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=57.6
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+|+|+||+..|+++.+++++++||++||++|+ |+|+.|+|+.+|++||+++|++++++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 38999999999999999999999999999998 7899999999999999999999999987
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.65 E-value=2.7e-16 Score=91.75 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=57.1
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
|+|+|++.+|+++.+++++++||+++|++|+ |+|++|+|+.+|++|||++|++++++++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 7999999999999999999999999999986 89999999999999999999999998863
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.65 E-value=2.4e-16 Score=91.12 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=53.5
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+.||..+|+++++++++++||+++|++|+ |+|++|+|+.+|++|+|+++++||+++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 36899999999999999999999999998 999999999999999999999999986
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.65 E-value=2.9e-16 Score=90.71 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=54.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+.|+||+..|+ ..+++++++||++||++|+ |+|++|+|+.+|++||+++|+++|+++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 4899999999999999997 9999999999999999999999999986
No 18
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.9e-16 Score=101.98 Aligned_cols=61 Identities=66% Similarity=0.840 Sum_probs=59.4
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|||+++.|+++.+++++++||..+|++|+ |+|++|+|+++|+||+|+..+|+|+++++|
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~ 74 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEec
Confidence 7899999999999999999999999999999 999999999999999999999999999985
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=5.8e-16 Score=88.57 Aligned_cols=56 Identities=34% Similarity=0.529 Sum_probs=53.6
Q ss_pred ECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 42 KTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 42 k~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+++|++++++|++++||.+||++|+ |+|+.|+|+.+|++|||++|++|++++|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 57899999999999999999999999 999999999999999999999999999875
No 20
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.55 E-value=6.5e-15 Score=86.88 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=53.6
Q ss_pred CeeeEEECCCCCE--EEEeecCCCcHHHhhcccc---------------CCCeeCCCCCcccccc--cCCCCEEEEEE
Q 042212 36 RMQIFVKTSTGKT--ITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADYN--IQKESTLHFVL 94 (97)
Q Consensus 36 ~m~i~vk~~~g~~--~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y~--I~~~sti~l~~ 94 (97)
++.+.||+++|++ +++++++++||+++|++|+ |+||.|+|+.||++|+ +.++.|+||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3789999999998 5556689999999999998 9999999999999996 99999999985
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.52 E-value=1.6e-14 Score=84.51 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=51.4
Q ss_pred CCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 44 STGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 44 ~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
++|+++++++++++||+++|++|+ |+|+.|+|+++|++|+|+++++|+++++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999998 999999999999999999999999999874
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.52 E-value=1.8e-14 Score=83.32 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=51.2
Q ss_pred eEEECC-CCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCC-CcccccccCCCCEEEEE
Q 042212 39 IFVKTS-TGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDG-WTQADYNIQKESTLHFV 93 (97)
Q Consensus 39 i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~-~tL~~y~I~~~sti~l~ 93 (97)
|+||+. .|+++.+++++++||+++|++|+ |+|++|+|+ .+|++|||++|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578898 89999999999999999999998 999999987 68999999999999974
No 23
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.49 E-value=8.5e-14 Score=83.43 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=60.7
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+..|+|+|++.+|+.+.++|++++|++.||++++ |+|+.|+++.|+++|+++++++|+++++++
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3559999999999999999999999999999998 999999999999999999999999999875
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.6e-14 Score=78.85 Aligned_cols=57 Identities=35% Similarity=0.491 Sum_probs=54.9
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|.|.|++++|+.+.++++|+++|+.+|++++ |+|+++.|+.|-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6789999999999999999999999999999 99999999999999999999999984
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.45 E-value=1.3e-13 Score=79.09 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=53.4
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|+||+. |+++++++++++||++||++|+ |+|+.|+|+.+|++||+++|++++++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899997 9999999999999999999998 999999999999999999999999874
No 26
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=2.6e-13 Score=99.86 Aligned_cols=59 Identities=14% Similarity=0.254 Sum_probs=56.7
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+|+||+++|+++.++|++++||.+||++|+ |+||+|+|+.+|++|||+++++|+++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 8999999999999999999999999999996 9999999999999999999999999875
No 27
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.32 E-value=2e-12 Score=72.21 Aligned_cols=51 Identities=41% Similarity=0.474 Sum_probs=48.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKES 88 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~s 88 (97)
|+|+||+.+ +++.+++++++||++||++|+ |+|+.|+|+.+|++||+++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 799999999999999999998 999999999999999999885
No 28
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.29 E-value=6.4e-12 Score=73.25 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=50.9
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------C---CCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------S---PAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~---~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|.|.||. .|+++.++|++++||++||++|+ | +|+.++|+.+|++|+|++|+.++++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4566766 68999999999999999999999 5 8999999999999999999999986
No 29
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.22 E-value=9.9e-12 Score=93.04 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=56.6
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
.++|.||+.++ ...+.|..+.||.++|+.|. |+||+|+|+.||..|||++|.||||+++.
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 48899999987 88999999999999999999 99999999999999999999999999874
No 30
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.22 E-value=1.5e-11 Score=88.28 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=56.6
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+|+||++.|++|++++.|++||.++|++|+ |+||.|.|+.|+.+|++++++.+.+++.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMls 74 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLS 74 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEe
Confidence 7899999999999999999999999999999 9999999999999999999999988874
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.17 E-value=1.7e-11 Score=71.61 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=38.9
Q ss_pred eec-CCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 52 EVE-SSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 52 ~v~-~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+|+ .++||.+||++|+ |+||+|+|++||++|||++|++||++.
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 344 5789999999997 999999999999999999999999985
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.16 E-value=7.3e-11 Score=69.00 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=47.4
Q ss_pred ECCCCCEEEEeecCCCcHHHhhcccc------------CCCeeCC-CCCcccccccC-CCCEEEEEE
Q 042212 42 KTSTGKTITLEVESSDMIDNASRGSS------------SPAGNFE-DGWTQADYNIQ-KESTLHFVL 94 (97)
Q Consensus 42 k~~~g~~~~l~v~~~~tV~~lK~~I~------------~~gk~L~-d~~tL~~y~I~-~~sti~l~~ 94 (97)
+...|.++++++++++||+++|++|+ |+|+.|. |+++|++||++ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRWVIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44578899999999999999999999 9999995 77999999998 889999864
No 33
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.13 E-value=3.2e-11 Score=70.00 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=33.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||++++++|+++++.++
T Consensus 34 ip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 34 IDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 799999999999999 999999999999999997653
No 34
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.09 E-value=6.8e-11 Score=73.60 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=53.6
Q ss_pred CeeeEEECCCCC-EEEEeecCCCcHHHhhcccc--------------------CCCeeCCCCCcccccc------cCCCC
Q 042212 36 RMQIFVKTSTGK-TITLEVESSDMIDNASRGSS--------------------SPAGNFEDGWTQADYN------IQKES 88 (97)
Q Consensus 36 ~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~--------------------~~gk~L~d~~tL~~y~------I~~~s 88 (97)
.+.|.+|..+|. .=+..+++++||+++|++|+ |+||+|+|+.||++|+ +....
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 466788888885 44678889999999999997 9999999999999999 88889
Q ss_pred EEEEEEee
Q 042212 89 TLHFVLRL 96 (97)
Q Consensus 89 ti~l~~rl 96 (97)
|+|+++|.
T Consensus 84 TmHvvlr~ 91 (113)
T cd01814 84 TMHVVVQP 91 (113)
T ss_pred EEEEEecC
Confidence 99999985
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.09 E-value=2.3e-10 Score=64.48 Aligned_cols=54 Identities=43% Similarity=0.519 Sum_probs=50.4
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+..+|+.+.+.++++.||.++|++|+ |+|+.|+|+.+|++|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 667789999999999999999999998 999999999999999999999999864
No 36
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.9e-11 Score=78.14 Aligned_cols=36 Identities=75% Similarity=1.104 Sum_probs=34.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||++||||||+|++| |+||+|+..|++||+++++++
T Consensus 36 Ip~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 899999999999999 999999999999999998765
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.04 E-value=1.8e-10 Score=66.17 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=52.2
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|+|+..+|+.+.+.|.+++++..|++..+ |.|+.|+++.|+++||+++|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 6899999999999999999999999998876 999999999999999999999999864
No 38
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.03 E-value=1.3e-10 Score=68.35 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=32.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|++| |++|||++|++|+|++++.+
T Consensus 38 i~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 38 VEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 799999999999999 99999999999999998753
No 39
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.02 E-value=1.3e-10 Score=67.41 Aligned_cols=33 Identities=52% Similarity=0.798 Sum_probs=31.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|+|++| |++|||++++++||+++.
T Consensus 36 i~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 36 VPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 699999999999999 999999999999999884
No 40
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.00 E-value=1.7e-10 Score=67.39 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=28.5
Q ss_pred CCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 2 PLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 2 p~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
|+++|||+|+|++| |++|||++|++|||+.
T Consensus 40 ~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 40 DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 48999999999999 9999999999999985
No 41
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=3e-09 Score=59.70 Aligned_cols=59 Identities=56% Similarity=0.675 Sum_probs=55.1
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+++++..|++..+.+.+..+|..+|.+|+ ++|+.|+|+.++++|+|..++++++..+++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 57788899999999999999999999999 889999999999999999999999998864
No 42
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.92 E-value=6.8e-10 Score=68.52 Aligned_cols=35 Identities=46% Similarity=0.807 Sum_probs=33.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||.++++|||.+++++
T Consensus 63 ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 63 IPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 799999999999999 99999999999999998765
No 43
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.92 E-value=7.4e-10 Score=64.22 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=32.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|++| |++|||+++++++|.+++.+
T Consensus 34 i~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 34 VQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 699999999999999 99999999999999998754
No 44
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.89 E-value=7.6e-10 Score=63.45 Aligned_cols=32 Identities=38% Similarity=0.699 Sum_probs=30.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
+|+++|+|+|+|++| |++|||++||++||+.|
T Consensus 34 i~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 34 VPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 689999999999999 99999999999999864
No 45
>PTZ00044 ubiquitin; Provisional
Probab=98.88 E-value=1.1e-09 Score=63.53 Aligned_cols=35 Identities=40% Similarity=0.798 Sum_probs=32.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|++| |++|||++|+++|+.+++.+
T Consensus 36 i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 36 IDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999 99999999999999998765
No 46
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.87 E-value=7.8e-09 Score=64.60 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=47.6
Q ss_pred eeeEEECCCCC-EEEEeecCCCcHHHhhcccc--------------------CCCeeCCCCCcccccccCCCC------E
Q 042212 37 MQIFVKTSTGK-TITLEVESSDMIDNASRGSS--------------------SPAGNFEDGWTQADYNIQKES------T 89 (97)
Q Consensus 37 m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~--------------------~~gk~L~d~~tL~~y~I~~~s------t 89 (97)
+.+.++..+|+ +.++.+++++||.+||+.|. |.||.|+|+.||+++++..|. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 45666777998 88999999999999999998 999999999999999998766 6
Q ss_pred EEEEEee
Q 042212 90 LHFVLRL 96 (97)
Q Consensus 90 i~l~~rl 96 (97)
+|+++|.
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 8998874
No 47
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.83 E-value=1.6e-09 Score=62.44 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
||+++|+|+|+|+.| |++|||.++++|||.+
T Consensus 34 i~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 34 VDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 699999999999999 9999999999999986
No 48
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.82 E-value=3e-09 Score=61.36 Aligned_cols=35 Identities=49% Similarity=0.851 Sum_probs=32.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
+|+++|+|+|+|+.| |++|||++|++||++++.++
T Consensus 36 ~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 36 IPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 699999999999998 99999999999999998765
No 49
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.81 E-value=3.3e-09 Score=60.30 Aligned_cols=33 Identities=52% Similarity=0.854 Sum_probs=31.3
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
+|+++|+|+|+|+.| |++|||.+|++|+|+++.
T Consensus 31 ~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 31 IPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp STGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred cccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 699999999999999 999999999999999874
No 50
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.81 E-value=2.2e-09 Score=61.69 Aligned_cols=32 Identities=44% Similarity=0.535 Sum_probs=30.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
||+++|+|+|+|++| |++|||++||++||+++
T Consensus 35 i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 35 ANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 688999999999999 99999999999999875
No 51
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.79 E-value=3.1e-09 Score=61.94 Aligned_cols=35 Identities=34% Similarity=0.595 Sum_probs=32.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||++|++|||+++.++
T Consensus 33 ip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 33 MPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred CCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 799999999999998 99999999999999998755
No 52
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.77 E-value=7.8e-09 Score=63.13 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=43.6
Q ss_pred EEEEeecCCCcHHHhhcccc-------------CCCeeCC-CCCcccccccCCCCEEEEEEee
Q 042212 48 TITLEVESSDMIDNASRGSS-------------SPAGNFE-DGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~-d~~tL~~y~I~~~sti~l~~rl 96 (97)
..+++|++++||.+||.+|. |+|+.|. |.+||++|||.++|++.|.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 45788999999999999998 8899995 5789999999999999998753
No 53
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.77 E-value=3.7e-09 Score=61.43 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=29.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
+|+++|||+|+|+.| |++|||.+||+|||..
T Consensus 37 ~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 37 TRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 699999999999999 9999999999999974
No 54
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.74 E-value=6.3e-09 Score=59.99 Aligned_cols=35 Identities=77% Similarity=1.145 Sum_probs=32.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
+|+++|+|+|+|+.| |++|||++|+++|+.+++.+
T Consensus 36 ~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 689999999999999 99999999999999998765
No 55
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.71 E-value=9.4e-09 Score=60.28 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=33.2
Q ss_pred CCCCceEEEecCccc----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
+|+++|+|+|+|+.| |++|||.+|++|+|+..+.++
T Consensus 37 ~~~~~qrL~~~Gk~L~d~~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 37 VPKERLALLHRETRLSSGKLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CChHHEEEEECCcCCCCCcHHHcCCCCCCEEEEEeecccc
Confidence 589999999999999 999999999999999987654
No 56
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7.5e-10 Score=68.33 Aligned_cols=36 Identities=78% Similarity=1.116 Sum_probs=34.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| +++|||+..||+|++.++.++
T Consensus 36 i~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 36 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 799999999999999 999999999999999998765
No 57
>PLN02560 enoyl-CoA reductase
Probab=98.64 E-value=4.8e-08 Score=70.51 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=49.0
Q ss_pred eeeEEECCCCCEE---EEeecCCCcHHHhhcccc--------------C---CC----eeCCCCCcccccccCCCCEEEE
Q 042212 37 MQIFVKTSTGKTI---TLEVESSDMIDNASRGSS--------------S---PA----GNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 37 m~i~vk~~~g~~~---~l~v~~~~tV~~lK~~I~--------------~---~g----k~L~d~~tL~~y~I~~~sti~l 92 (97)
|+|.|+..+|+.+ +++++++.||++||++|+ + .| +.|+|+.+|++||+++|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6789998889887 799999999999999997 3 23 3789999999999999999876
No 58
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.63 E-value=1.6e-08 Score=57.66 Aligned_cols=32 Identities=44% Similarity=0.920 Sum_probs=29.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
||++.|+|+|+|+.| |++|||++|+++|++.+
T Consensus 36 i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 36 IPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred cCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999998 99999999999999864
No 59
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.62 E-value=2.4e-08 Score=57.90 Aligned_cols=33 Identities=30% Similarity=0.574 Sum_probs=30.6
Q ss_pred CCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 2 PLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 2 p~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
|+++|+|+|+|+.| |++|||++|+++++.++.+
T Consensus 39 ~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 39 PPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred ChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 89999999999999 9999999999999988743
No 60
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.61 E-value=1.6e-08 Score=58.24 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=28.1
Q ss_pred CCCCceEEEecCccc------cccccccCCCcceee
Q 042212 1 MPLEQQRLVFADKSL------LADYNIQKESTLHLV 30 (97)
Q Consensus 1 ip~~~q~L~~~~~~L------l~~y~i~~~s~i~l~ 30 (97)
||+++|+|+|+|++| |++|||++|++++|.
T Consensus 35 ip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 35 IPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 699999999999999 899999999999974
No 61
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.58 E-value=8e-08 Score=56.77 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=37.7
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeC--CCCCcccccccCCCCEEEEE
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNF--EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L--~d~~tL~~y~I~~~sti~l~ 93 (97)
.+.|.|.||+.+| +..+++++++|+.+|+++|+ -....+ .++.+|+++|++.|+.++|.
T Consensus 2 ~~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 2 ASSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ----EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3568999999987 56789999999999999999 112344 56899999999999999874
No 62
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.58 E-value=9.9e-08 Score=59.52 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=46.6
Q ss_pred eeEEECCCCC-EEEEeecCCCcHHHhhcccc------------CC-CeeCCCCCccccccc-------CCCCEEEEEEe
Q 042212 38 QIFVKTSTGK-TITLEVESSDMIDNASRGSS------------SP-AGNFEDGWTQADYNI-------QKESTLHFVLR 95 (97)
Q Consensus 38 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~------------~~-gk~L~d~~tL~~y~I-------~~~sti~l~~r 95 (97)
-+|++....+ ++.++++++.||.+||++|+ |. +..|+|++||+|||+ ++.+++-|.+|
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 3444443334 56669999999999999999 54 467899999999999 77999999887
No 63
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1e-08 Score=57.15 Aligned_cols=30 Identities=50% Similarity=0.806 Sum_probs=28.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLV 30 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~ 30 (97)
||+.+|||+|+|+|+ -++|++..||++|++
T Consensus 36 IPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 36 IPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 899999999999999 889999999999985
No 64
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.53 E-value=2.1e-07 Score=55.37 Aligned_cols=56 Identities=9% Similarity=0.168 Sum_probs=43.8
Q ss_pred eeEEECC-CCCEEEEeecCCCcHHHhhcccc--------------CCCe-----eC-CCCCcccccccCCCCEEEEE
Q 042212 38 QIFVKTS-TGKTITLEVESSDMIDNASRGSS--------------SPAG-----NF-EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 38 ~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk-----~L-~d~~tL~~y~I~~~sti~l~ 93 (97)
.++|... +....+..+++++||.+||++++ |.|+ .| +|+.+|++||+++|++||++
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 3445443 23445556999999999999998 6666 45 77889999999999999986
No 65
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.51 E-value=5e-08 Score=57.34 Aligned_cols=33 Identities=33% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCCCceEE--EecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRL--VFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L--~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+| +|+|+.| |++|||.+|++|+|+++.
T Consensus 38 i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 38 VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 68999999 8999999 999999999999999873
No 66
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.50 E-value=1.1e-07 Score=56.84 Aligned_cols=35 Identities=11% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|++| +++|||++|++|+++++..+
T Consensus 47 i~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 47 LSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred CCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 689999999999999 99999999999999998765
No 67
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.43 E-value=1e-07 Score=59.41 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.7
Q ss_pred CCceEEEecCccc-----ccccc------ccCCCcceeeeeecC
Q 042212 3 LEQQRLVFADKSL-----LADYN------IQKESTLHLVARLRG 35 (97)
Q Consensus 3 ~~~q~L~~~~~~L-----l~~y~------i~~~s~i~l~~~~~~ 35 (97)
+++|+|||+|+.| |++|+ +...+|+|++++.+.
T Consensus 50 ~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~ 93 (113)
T cd01814 50 VNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPL 93 (113)
T ss_pred HHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCC
Confidence 8999999999999 99999 888999999999754
No 68
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.41 E-value=1.1e-07 Score=56.02 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=27.8
Q ss_pred CCCceEEEecCccc-----ccccc--ccCCCcceeee
Q 042212 2 PLEQQRLVFADKSL-----LADYN--IQKESTLHLVA 31 (97)
Q Consensus 2 p~~~q~L~~~~~~L-----l~~y~--i~~~s~i~l~~ 31 (97)
|+++|||||+||.| |++|+ +.+|.++||+.
T Consensus 42 ~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 42 LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 47999999999999 99996 99999999985
No 69
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.39 E-value=1.6e-07 Score=53.43 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
||+++|+|+|+|+.| |++|||.+|++|+++.
T Consensus 35 i~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 35 VEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 689999999999999 9999999999999864
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.37 E-value=2e-07 Score=70.31 Aligned_cols=34 Identities=38% Similarity=0.627 Sum_probs=32.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
+|+++|+|||+||.| |..|||++|.|||||++..
T Consensus 50 a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 50 APPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred CChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 589999999999999 9999999999999999864
No 71
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.35 E-value=6.7e-07 Score=52.17 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=35.7
Q ss_pred cCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 54 ESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 54 ~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
+++.||.+||..|+ +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 48889999999987 7899999999999999999999876
No 72
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.33 E-value=3.6e-07 Score=55.88 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCCCceEEEecCccc------cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL------LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L------l~~y~i~~~s~i~l~~~~~ 34 (97)
+|+++|+|+|+|+.| |++|||..+|+|+|.++.+
T Consensus 40 V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 40 VAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 689999999999998 9999999999999999754
No 73
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.2e-07 Score=72.86 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=54.1
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
.+.||+++.++.++.+...+||+++|..|. |.|++|.|++++.+|+| +|-+|||+=|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence 378999999999999999999999999998 99999999999999999 9999999865
No 74
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.28 E-value=4.1e-07 Score=53.05 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=27.6
Q ss_pred CCCCceEEEecCccc------ccccccc-CCCcceeee
Q 042212 1 MPLEQQRLVFADKSL------LADYNIQ-KESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L------l~~y~i~-~~s~i~l~~ 31 (97)
||+++|+| |+|+.| |++||++ +|+++||.+
T Consensus 38 ip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 38 FPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 79999999 999888 9999999 889999875
No 75
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.24 E-value=1.7e-06 Score=51.53 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=42.6
Q ss_pred eeEEECCCC--CEEEEeecCCCcHHHhhcccc--------------C---CC---eeC-CCCCcccccccCCCCEEEEE
Q 042212 38 QIFVKTSTG--KTITLEVESSDMIDNASRGSS--------------S---PA---GNF-EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 38 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~--------------~---~g---k~L-~d~~tL~~y~I~~~sti~l~ 93 (97)
.++|..... ...+..+++++||.+||.+|+ + ++ ..+ +|+++|++||+++|.+||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 455544433 588889999999999999999 2 22 223 67899999999999999985
No 76
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.05 E-value=2.3e-06 Score=49.68 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCCCceEEEe---cCccc-----cccccccCCCcceee
Q 042212 1 MPLEQQRLVF---ADKSL-----LADYNIQKESTLHLV 30 (97)
Q Consensus 1 ip~~~q~L~~---~~~~L-----l~~y~i~~~s~i~l~ 30 (97)
||+++|+|+| .|+.| |++|||.+|+.++|+
T Consensus 35 vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 35 VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 7999999996 89888 999999999999986
No 77
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.3e-06 Score=47.75 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=47.5
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
++.++..-|+.+.+.+.+++||.++|..|+ --+..+.|.-+|++|.|.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456677789999999999999999999998 23455789999999999999888764
No 78
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.85 E-value=3.4e-05 Score=44.87 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=46.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc----CCC-------------eeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS----SPA-------------GNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----~~g-------------k~L~d~~tL~~y~I~~~sti~l~ 93 (97)
+++.|+-..+...++.|+|..+|..+|++|. |.| ..|.+..+|++|||=.+..|-++
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcccceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 4678888777889999999999999999999 222 34688999999999877666554
No 79
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.82 E-value=6.2e-05 Score=39.66 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 43 TSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 43 ~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
..+|+...+.+.+..|+.++|++++ ++|..+.+...+.+|++.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3478889999999999999999987 888899888888899999999999864
No 80
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=97.77 E-value=2e-05 Score=43.98 Aligned_cols=31 Identities=65% Similarity=0.924 Sum_probs=28.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
+|++.|+|+|+|+.| |.+||+.++++|++..
T Consensus 33 ~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 33 VPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred cChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 588999999999999 9999999999999864
No 81
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=97.73 E-value=1.4e-05 Score=44.06 Aligned_cols=25 Identities=64% Similarity=0.999 Sum_probs=23.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKES 25 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s 25 (97)
+|+++|+|+|+|+.| |++|||.+|+
T Consensus 35 ~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 35 IPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 688999999999999 9999999986
No 82
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=2e-05 Score=58.47 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=31.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
+|+++|+|+|+|+.| |++|||.++++|+++++.+
T Consensus 39 ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 39 YPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 588999999999999 9999999999999998753
No 83
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.69 E-value=4.6e-05 Score=42.25 Aligned_cols=34 Identities=68% Similarity=1.040 Sum_probs=31.4
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||.++|++.|.|+.| +.+|+|.+++++++..+++
T Consensus 35 ~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 35 IPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 688999999999998 9999999999999998764
No 84
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.60 E-value=0.00013 Score=42.60 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=41.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
+.|.|...+|+.+.+.+..+.+|+++...+. -+|..|+++.||+++||.+|+.+.+
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 3566666557888999999999998887766 5678899999999999999999886
No 85
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.57 E-value=7.9e-05 Score=44.17 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=26.9
Q ss_pred CCCCceEEE-ecCc-----cc------cccccccCCCcceeee
Q 042212 1 MPLEQQRLV-FADK-----SL------LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~-~~~~-----~L------l~~y~i~~~s~i~l~~ 31 (97)
+|+..|+|. |.++ .| |++||+++|++||++=
T Consensus 38 ~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 38 TPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred CCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 689999995 8887 46 9999999999999864
No 86
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.51 E-value=0.00049 Score=40.15 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCC--CcccccccCCCCEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDG--WTQADYNIQKESTLHFV 93 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~--~tL~~y~I~~~sti~l~ 93 (97)
+...|.||.++|+.+.-...+++|+.+|.+-|. |-.+.+.++ .||++.|+.+++++++.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 457889999999999999999999999998887 566777544 69999999999998874
No 87
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=97.45 E-value=7.9e-05 Score=42.41 Aligned_cols=31 Identities=32% Similarity=0.579 Sum_probs=27.0
Q ss_pred CCC-CceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPL-EQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~-~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
+|. ++.+|+|.|+.| +++|||.+|++|++++
T Consensus 36 i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 36 IPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp TTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 577 899999999999 9999999999999864
No 88
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.33 E-value=0.00071 Score=39.72 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=46.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCC-CCcccccccCCCCEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFED-GWTQADYNIQKESTL 90 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d-~~tL~~y~I~~~sti 90 (97)
..+|.||.++|+.+...+..++||++|.+-|. |-.+.|.| +.||.+.|+.+.+.+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 46789999999999999999999999998876 66677744 789999999875543
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00013 Score=59.45 Aligned_cols=34 Identities=35% Similarity=0.718 Sum_probs=31.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||.++|||||+||.| +.+||| +|.+|||+.|.+.
T Consensus 38 i~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 38 IPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred cccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 789999999999999 999999 9999999999653
No 90
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0002 Score=52.21 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=47.4
Q ss_pred eeeEEECC---CCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTS---TGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~---~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|.++|+.. ....++++|+.+.+|.+||+.++ |+||+|.|+.++..+.+..-+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 44555543 23568889999999999999988 99999999999999999888888877
No 91
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.28 E-value=0.0014 Score=37.96 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=46.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCC---CCCcccccccCCCCEEEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFE---DGWTQADYNIQKESTLHF 92 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~---d~~tL~~y~I~~~sti~l 92 (97)
...|.||.++|+.+.-...+++|+.+|.+-|. |-.+.+. ++.||.+.|+.+ +++.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 35788999999999999999999999998886 6667775 478999999995 44433
No 92
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.24 E-value=0.0012 Score=38.46 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCCeeCCC---CCcccccccCCCCEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPAGNFED---GWTQADYNIQKESTLHF 92 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d---~~tL~~y~I~~~sti~l 92 (97)
+...|.||.++|+.+.-...+++|+.++.+-+. |-.+.+.+ +.||.+.|+.+.+++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 356889999999999999999999999999883 66777854 47999999998888766
No 93
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.21 E-value=0.0014 Score=38.38 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=49.3
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCCC---CCcccccccCCCCEEEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFED---GWTQADYNIQKESTLHF 92 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~d---~~tL~~y~I~~~sti~l 92 (97)
...|.||.++|+.+.-....++|++++.+-|+ |--|.+.+ +.||.+.|+.+.+++.+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 35788999999999999999999999999997 66677854 58999999999998876
No 94
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.95 E-value=0.00065 Score=41.38 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=35.9
Q ss_pred CEEEEeecCCCcHHHhhcccc------------CC---CeeCCCCCcccccc-------cCCCCEEEE
Q 042212 47 KTITLEVESSDMIDNASRGSS------------SP---AGNFEDGWTQADYN-------IQKESTLHF 92 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~------------~~---gk~L~d~~tL~~y~-------I~~~sti~l 92 (97)
.++.++++++.||-++|.+++ |. .+.|+|..||+|+| .+..+++-|
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 466779999999999999998 22 26689999999995 455555554
No 95
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.79 E-value=0.0043 Score=41.16 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=44.6
Q ss_pred eeeEEECCCC----CEEEEeecCCCcHHHhhcccc---------------CCCeeC--CCCCcccccccCCC----CEEE
Q 042212 37 MQIFVKTSTG----KTITLEVESSDMIDNASRGSS---------------SPAGNF--EDGWTQADYNIQKE----STLH 91 (97)
Q Consensus 37 m~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L--~d~~tL~~y~I~~~----sti~ 91 (97)
|+|+|++++| .++.+.+.++.||.+|+..|. ..++.| .++..++.+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 589999999999999999998 234444 45555666654443 3567
Q ss_pred EEEeeC
Q 042212 92 FVLRLS 97 (97)
Q Consensus 92 l~~rl~ 97 (97)
+.+|++
T Consensus 81 l~~rl~ 86 (162)
T PF13019_consen 81 LSLRLR 86 (162)
T ss_pred EEEecc
Confidence 766653
No 96
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.60 E-value=0.01 Score=35.26 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=49.0
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCC--------CCCcccccccCCCCEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFE--------DGWTQADYNIQKESTLHF 92 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~--------d~~tL~~y~I~~~sti~l 92 (97)
+..+|.+|.++|+.+.-....++|+++|..-|. |--+.++ .+.||.+.|+.+..++.+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 457899999999999999999999999998877 4446775 367999999998888765
Q ss_pred E
Q 042212 93 V 93 (97)
Q Consensus 93 ~ 93 (97)
.
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 3
No 97
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=96.53 E-value=0.0021 Score=37.28 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=24.6
Q ss_pred CCCCceEEE--ecCccc-----cccccccCCCccee
Q 042212 1 MPLEQQRLV--FADKSL-----LADYNIQKESTLHL 29 (97)
Q Consensus 1 ip~~~q~L~--~~~~~L-----l~~y~i~~~s~i~l 29 (97)
+|+++|||. +.|+.| |++||+.+|+++|+
T Consensus 39 ~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 39 LTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 367899996 778888 99999999999875
No 98
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.52 E-value=0.0031 Score=44.62 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=43.3
Q ss_pred eeeEEECCCC-CEEE-EeecCCCcHHHhhcccc------------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 37 MQIFVKTSTG-KTIT-LEVESSDMIDNASRGSS------------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 37 m~i~vk~~~g-~~~~-l~v~~~~tV~~lK~~I~------------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
|.|.+...++ -..+ .+.+...|+.|+++.+. -+|+.|.|+.+|++|+..+++++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566655443 2333 56778899999997766 6799999999999999999988765
No 99
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.023 Score=34.73 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=51.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
-+.+.|+.-+|..+.+.|..+...+.|+.--+ |+|+.+.+.+|-++.+.++++.|.++..
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEee
Confidence 36667777777888999999998888876655 9999999999999999999999988753
No 100
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.12 E-value=0.0048 Score=35.95 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=26.4
Q ss_pred CceEEEecC----ccc------cccccccCCCcceeeeeecC
Q 042212 4 EQQRLVFAD----KSL------LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 4 ~~q~L~~~~----~~L------l~~y~i~~~s~i~l~~~~~~ 35 (97)
.+|||.|.. ++| |++|||..+.+|.|+.+.+.
T Consensus 38 g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 38 GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred cceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence 479999865 665 99999999999999887543
No 101
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=96.10 E-value=0.0033 Score=45.87 Aligned_cols=34 Identities=24% Similarity=0.537 Sum_probs=31.1
Q ss_pred CCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 2 PLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 2 p~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
|+++|+|||+|+.| +.+|+|.+++-|.++++-+.
T Consensus 39 P~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 39 PAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred chhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 88999999999999 99999999999999887553
No 102
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.08 E-value=0.0045 Score=36.59 Aligned_cols=32 Identities=34% Similarity=0.609 Sum_probs=23.1
Q ss_pred CCCCceEEEec-C--cc----c------cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFA-D--KS----L------LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~-~--~~----L------l~~y~i~~~s~i~l~~~ 32 (97)
||++.|+|.+. . .. + |.+||+++|.+||+.=.
T Consensus 39 i~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~ 83 (87)
T PF14560_consen 39 IPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDT 83 (87)
T ss_dssp S-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-
T ss_pred CCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeC
Confidence 68999999976 1 11 1 99999999999997643
No 103
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=95.96 E-value=0.0095 Score=37.17 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=24.2
Q ss_pred CCceEEEecCccc-----cccccccCCC------cceeeeeec
Q 042212 3 LEQQRLVFADKSL-----LADYNIQKES------TLHLVARLR 34 (97)
Q Consensus 3 ~~~q~L~~~~~~L-----l~~y~i~~~s------~i~l~~~~~ 34 (97)
++..||||.||.| |++|++..|. ++||+++..
T Consensus 48 ~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp~ 90 (111)
T PF13881_consen 48 PSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRPN 90 (111)
T ss_dssp GGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-SS
T ss_pred hhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecCC
Confidence 4679999999999 9999999876 678888754
No 104
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.85 E-value=0.032 Score=32.54 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=41.2
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc------------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS------------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~------------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
++.-+|.++-+.++...+++.+-.-+. -.++.|.++..|.+|+|.+|+.+.+
T Consensus 11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 345568889999988888876644333 5688899999999999999998765
No 105
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.66 E-value=0.016 Score=32.81 Aligned_cols=50 Identities=6% Similarity=0.080 Sum_probs=34.7
Q ss_pred CCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 43 TSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 43 ~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
..+++.+.+.+.|+.++.++-+... |+++.|+-+.++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4578999999999999998866655 8899999999999999999999875
No 106
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.45 E-value=0.087 Score=30.89 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=48.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCC---CCCcccccccCCCCEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFE---DGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~---d~~tL~~y~I~~~sti~l~ 93 (97)
+..+|.||.++|+.+.-....++++.+|-.-+. |--+.+. .+.||.+.|+.+..++.+-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASKGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 346889999999999999999999999988876 5556663 3579999999999988764
No 107
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=95.32 E-value=0.015 Score=45.20 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.4
Q ss_pred eeeEEECC--CCCEEEEeecCCCcHHHhhcccc-------------------------CCCe-eCCCC------------
Q 042212 37 MQIFVKTS--TGKTITLEVESSDMIDNASRGSS-------------------------SPAG-NFEDG------------ 76 (97)
Q Consensus 37 m~i~vk~~--~g~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk-~L~d~------------ 76 (97)
+.+.|-.. .+..+.+.|-..|||.++|+||- -+|+ .|.|.
T Consensus 190 ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkr 269 (539)
T PF08337_consen 190 LTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKR 269 (539)
T ss_dssp EEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE
T ss_pred EEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceE
Confidence 45554332 23568888999999999999998 2233 45443
Q ss_pred -CcccccccCCCCEEEEEEe
Q 042212 77 -WTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 77 -~tL~~y~I~~~sti~l~~r 95 (97)
.||++|+|.+|+++.++.+
T Consensus 270 LNTL~HY~V~dga~vaLv~k 289 (539)
T PF08337_consen 270 LNTLAHYKVPDGATVALVPK 289 (539)
T ss_dssp --BHHHHT--TTEEEEEEES
T ss_pred eccHhhcCCCCCceEEEeec
Confidence 4899999999999999876
No 108
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.21 E-value=0.019 Score=35.00 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=29.0
Q ss_pred EEEEeec--CCCcHHHhhcccc---------------CCCeeCCCCCccccc
Q 042212 48 TITLEVE--SSDMIDNASRGSS---------------SPAGNFEDGWTQADY 82 (97)
Q Consensus 48 ~~~l~v~--~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y 82 (97)
.+.+++. .+.||..||..|. |+|+.|.|...|+.-
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 3667776 8899999999998 999999998777653
No 109
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.02 E-value=0.017 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=37.1
Q ss_pred ecCCCcHHHhhcccc--------------CCCeeCCCCCcccccc-cCCCCEEEEEEe
Q 042212 53 VESSDMIDNASRGSS--------------SPAGNFEDGWTQADYN-IQKESTLHFVLR 95 (97)
Q Consensus 53 v~~~~tV~~lK~~I~--------------~~gk~L~d~~tL~~y~-I~~~sti~l~~r 95 (97)
|+++++|.++++-+. ++|+.|+|...|++.. +++|+++.++..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 578899999999888 8999999988888874 888999998754
No 110
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.84 E-value=0.18 Score=29.88 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeC---CCCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNF---EDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L---~d~~tL~~y~I~~~sti~l~~ 94 (97)
+.-+|.||.++|+...-....++++++|-.-++ |--|.+ +.+.||.+.|+.+.+++.+--
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 446899999999999999999999999977776 334555 335799999999999988753
No 111
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=94.61 E-value=0.067 Score=30.39 Aligned_cols=51 Identities=10% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCCEEEEeecCCCcHHHhhccc-c----------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 45 TGKTITLEVESSDMIDNASRGS-S----------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I-~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+|+...++..++...--+.++- + -+|..|+-++.++|||+.++-++.+.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 5777777777666433332221 1 6788888899999999999999998876
No 112
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.16 E-value=0.11 Score=29.66 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=40.8
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc--------------C----C--CeeCCCCCcccccccCCCCEEEEEEe
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS--------------S----P--AGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~----~--gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+.++|...+++++++.|+.++=+.|+ + + ..-|+.+++|.++...++....+.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 567899999999999999999999988 4 2 24468888999998873444444333
No 113
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=93.76 E-value=0.073 Score=33.47 Aligned_cols=32 Identities=41% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCCCceEEEecCccc-----cccccc-------cCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNI-------QKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i-------~~~s~i~l~~~ 32 (97)
.|++.|+|+-.+..| |+|||+ ++-.++=|.+|
T Consensus 37 ~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 37 RPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 389999999444445 999999 55666666666
No 114
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=93.15 E-value=0.31 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=35.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+|+|. |+ .++++.+.|..++|.++. ++|-+..++. -+++|+.|.+.-|
T Consensus 1 M~I~vN---~k--~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~-----~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVN---EK--EIETEENTTLFELRKESKPDADIVILNGFPTKEDI-----ELKEGDEVFLIKK 56 (57)
T ss_pred CEEEEC---CE--EEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence 566663 44 467778889999999988 7787776664 4567888877543
No 115
>PLN02560 enoyl-CoA reductase
Probab=92.01 E-value=0.12 Score=37.53 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCCceEEEec---Cc----cc-----cccccccCCCccee
Q 042212 2 PLEQQRLVFA---DK----SL-----LADYNIQKESTLHL 29 (97)
Q Consensus 2 p~~~q~L~~~---~~----~L-----l~~y~i~~~s~i~l 29 (97)
|+++|||.+. |+ .| |+|||+++||++++
T Consensus 41 ~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 41 YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6899999983 33 44 99999999998665
No 116
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.2 Score=38.31 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=48.2
Q ss_pred eeEEECCCCCEEEEe-ecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 38 QIFVKTSTGKTITLE-VESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.+.||- .|+.+.++ ++.++|+..+|+++. +.|+.+.|+--....+|+++.+++++-
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 355655 47888887 999999999999998 889999999888899999999999874
No 117
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=91.74 E-value=0.15 Score=26.00 Aligned_cols=31 Identities=48% Similarity=0.700 Sum_probs=25.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
+|++.|.|+++|..+ +.+|++.+++++++..
T Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 33 LPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 367889999999887 4489999999998764
No 118
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.41 E-value=0.86 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=27.7
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.+.++++.|+++.+.+.|++.+.+|++.|.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~ 31 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLIS 31 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHH
Confidence 467889999999999999999999999998
No 119
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=0.32 Score=33.75 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=42.6
Q ss_pred CCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 45 TGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
+++.+.+.+...+|+.++|..+. |+|+.+-|...|..|++++|.-..+-
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 56778899999999999998887 99999999999999999999554443
No 120
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=90.63 E-value=0.2 Score=31.76 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.6
Q ss_pred eeC---CCCCcccccccCCCCEEEEE
Q 042212 71 GNF---EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 71 k~L---~d~~tL~~y~I~~~sti~l~ 93 (97)
..| +++.+|.++||.+.+.|.+.
T Consensus 81 ~iL~~~~~~~tL~~~gv~nETEiSfF 106 (122)
T PF10209_consen 81 WILDVSDDDKTLKELGVENETEISFF 106 (122)
T ss_pred eeeecCCCCCcHHHcCCCccceeeee
Confidence 567 78899999999999988764
No 121
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.2 Score=37.00 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=37.5
Q ss_pred CeeeEEECCCC--CEEEEeecCCCcHHHhhcccc---------------CCCeeCCCCCccccc
Q 042212 36 RMQIFVKTSTG--KTITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADY 82 (97)
Q Consensus 36 ~m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y 82 (97)
+..+++|..+. +..++..+..+||.+||..++ |.||.|.|...+.|.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 35677777765 457778889999999999988 889988888777664
No 122
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=90.32 E-value=1.7 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.++.+.|..++|.+..+.++++.|++++-..++
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~ 34 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVC 34 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHH
Confidence 356788888999999999999999999999988
No 123
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=89.66 E-value=0.27 Score=36.78 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=46.7
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCC-CCcccccccCCCCEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFED-GWTQADYNIQKESTL 90 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d-~~tL~~y~I~~~sti 90 (97)
+-.|-||..+|+.....++.+.||.+++.-|. |--|.|.| +.||.+.|+.+...+
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 46788888999999999999999999999998 66788855 689999999876544
No 124
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=0.55 Score=32.59 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=35.9
Q ss_pred EEEeecCCCcHHHhhcccc--------------CCC-----eeC-CCCCcccccccCCCCEEEEE
Q 042212 49 ITLEVESSDMIDNASRGSS--------------SPA-----GNF-EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~--------------~~g-----k~L-~d~~tL~~y~I~~~sti~l~ 93 (97)
..-..+++.|++++|.|++ |.| ..| +++..|..|+..+|..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 4456678999999999999 333 345 55789999999999999985
No 125
>PRK06437 hypothetical protein; Provisional
Probab=88.98 E-value=1.9 Score=24.23 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 45 TGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
.++...++++...||++|-+.+. .+|+.+. .++-+++|+.+.++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv 61 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLIL 61 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECC-----CceEcCCCCEEEEE
Confidence 44667788888899998877666 6777776 55677889988876
No 126
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=0.77 Score=27.82 Aligned_cols=55 Identities=9% Similarity=0.195 Sum_probs=44.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLH 91 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~ 91 (97)
+.+.|-..+|..+.+.+..+.+.+.|..--+ |+|+.++.++|-++++.++++.|.
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iE 92 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIE 92 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHH
Confidence 5566666678889999999998887765444 999999999999999999887654
No 127
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=86.63 E-value=1.9 Score=33.02 Aligned_cols=57 Identities=7% Similarity=0.107 Sum_probs=43.0
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc--------------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS--------------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
++.|...+ +...+-+..+..+.++-..|. -+|.+|+.++||++.+|.||+++++..+
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 45565543 345666667777777665554 6788999999999999999999999754
No 128
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.72 E-value=0.61 Score=34.45 Aligned_cols=31 Identities=29% Similarity=0.653 Sum_probs=28.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
||+++.+.||+|++| +..+.+...|.+|.++
T Consensus 39 vp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 39 VPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 699999999999999 8888888999999873
No 129
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=85.40 E-value=4.8 Score=22.62 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=35.6
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|.+... +....+++++..|++++-+.+. .+|.... .++-+++|+.+.+.
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii 64 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAVGFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECC-----CCcCcCCCCEEEEE
Confidence 55666332 2356778888899999998776 5666664 35667889988875
No 130
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=84.89 E-value=2.9 Score=23.02 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=32.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|.+ +|+.+.+ ++ .|+.+|.+.+. .++..+.. ..-++.-+++|+.|.++-
T Consensus 1 m~i~~---Ng~~~~~--~~-~tl~~Ll~~l~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFV---NGETLQT--EA-TTLALLLAELDYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEE---CCeEEEc--Cc-CcHHHHHHHcCCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEE
Confidence 44555 5677666 33 58998887766 44554432 233466788999988763
No 131
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=83.04 E-value=3.1 Score=24.90 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=33.1
Q ss_pred EEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 48 TITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
.+...++-.+++..||..++ ....+|+++++|-+.|++-..++.+.+-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 34557778888999998887 3355699999999999998888888764
No 132
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=81.67 E-value=4.1 Score=22.22 Aligned_cols=48 Identities=6% Similarity=0.054 Sum_probs=33.0
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc-----------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS-----------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-----------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|.|.+++|+... ++...|+.++=+.|. .+|+..+-+ |-+++|+++.+.
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~-----~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLD-----HPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETT-----SBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCC-----CCcCCCCEEEEE
Confidence 345568888766 668889999988888 666655554 445677777664
No 133
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=80.98 E-value=1.4 Score=26.95 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred cCCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 67 SSPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 67 ~~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
-|+||+|..+.+|++| +..+..-.+++++
T Consensus 5 W~aGK~l~~~k~l~dy-~GkNEKtKiivKl 33 (98)
T PF11069_consen 5 WWAGKELQRGKKLSDY-IGKNEKTKIIVKL 33 (98)
T ss_pred EeccccccCCCcHHHh-cCCCcceeEEEEe
Confidence 3899999999999999 5444444555443
No 134
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=1.5 Score=33.66 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
+|++.|+++..|+.+ ...-+|++|.+++|+-..
T Consensus 39 V~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 39 VPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred CCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 589999999999999 888999999999998764
No 135
>PRK07440 hypothetical protein; Provisional
Probab=80.52 E-value=5.4 Score=22.56 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=34.7
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
.|.|.+ +|+. .++....||.+|-+.+. .+|..+.-+ .-+++-+++|+.+.++
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIV 64 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEE
Confidence 467766 5665 45557788998877665 666666422 3455667888888775
No 136
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=79.40 E-value=6.3 Score=21.78 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=32.6
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|.| +|+.+.+ +...|+.++-+.+. .++..+.-+ .-+++-+++|+.|.++-
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQLNQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHcCCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE
Confidence 45555 5666555 46778998887666 555555321 23455688899888763
No 137
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=79.32 E-value=6 Score=22.09 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=32.5
Q ss_pred eeeEEECCCCCEEEEeecCC-CcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESS-DMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~-~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|.| +|+..++ +.. .||.++-+.+. .+|..+.-+ .-+++-+++|+.+.++
T Consensus 1 m~I~v---NG~~~~~--~~~~~tv~~lL~~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 1 MNLKI---NGNQIEV--PESVKTVAELLTHLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIV 61 (67)
T ss_pred CEEEE---CCEEEEc--CCCcccHHHHHHHcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEE
Confidence 44555 5666544 444 57888776655 667766443 4455668888888775
No 138
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=78.64 E-value=8.1 Score=22.07 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=30.2
Q ss_pred CEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 47 KTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
....++++...|+.+|.+.+. .||+... .++-+++|++|.+..
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC
Confidence 456777878889999988874 3444433 445678899988764
No 139
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=76.85 E-value=9.7 Score=20.67 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=31.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc--------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS--------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|.| +|+.. ++.+..|+.++-+.+. .+|.....+ .-.+.-+++|+.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 1 MDIQL---NQQTL--SLPDGATVADALAAYGARPPFAVAVNGDFVART-QHAARALAAGDRLDLVQ 60 (65)
T ss_pred CEEEE---CCEEE--ECCCCCcHHHHHHhhCCCCCeEEEECCEEcCch-hcccccCCCCCEEEEEe
Confidence 44444 45554 4456778888877654 566655322 12344578899998764
No 140
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=75.77 E-value=1.2 Score=29.94 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=30.5
Q ss_pred HhhccccCCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 61 NASRGSSSPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 61 ~lK~~I~~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
-+|.++.|.|.+++..+....|||+.+|.+.+.-++
T Consensus 8 i~kd~ldYdGSqI~~~wA~~~fgI~gdSiVvfrG~m 43 (189)
T COG2029 8 ILKDRLDYDGSQIRSAWAYRNFGIKGDSIVVFRGPM 43 (189)
T ss_pred EecccccCchhhhhhhHhHhhcCcCCceEEEEeccc
Confidence 457777799999999999999999999988775443
No 141
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=75.21 E-value=5.2 Score=22.94 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.3
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.|-.++|+...+.+.|+.|+.++-+++.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c 30 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKAC 30 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHH
Confidence 45667899999999999999999988777
No 142
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=74.90 E-value=3.9 Score=24.38 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=34.1
Q ss_pred EEEeecCCCcHHHhhcccc-------------------CCC--eeCCCCCcccccccCCCCEEEEEE
Q 042212 49 ITLEVESSDMIDNASRGSS-------------------SPA--GNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~-------------------~~g--k~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.-+.|+..+|+.++-++++ .+| ..+..+.++++-||.+-..+.+..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 4468899999999999888 555 788889999999999988888764
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=73.46 E-value=7.6 Score=21.29 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred CCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 45 TGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+|+.+ +++...|+.++.+.+. .+|+....+ .-+++-+++|+.|.+.-
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEELGLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 45554 4456789999998876 566665433 23345688899888764
No 144
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=72.84 E-value=5.3 Score=23.81 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=25.7
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
-|.|-..+|.+.++.|+..+|+.++-+.+.
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~ 33 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLV 33 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHH
Confidence 355666789999999999999999988877
No 145
>smart00455 RBD Raf-like Ras-binding domain.
Probab=70.72 E-value=8 Score=21.90 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=25.1
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.|-.++|+...+.+.|+.|+.++-+++.
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~ 30 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKAL 30 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHH
Confidence 34567899999999999999999988877
No 146
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=70.60 E-value=14 Score=20.15 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=32.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|.+ +|+.. ++....|+.++-+.+. .+|..+.-. .-.+.-+++|+.+.++-
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLAREGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 44555 56654 5556788988876655 666555432 23445578888887753
No 147
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=70.49 E-value=12 Score=22.03 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=35.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
.|+|.| +|+...+ +...||.+|-+.+. .+|..+.- ..-+++-+++|+.|.++
T Consensus 18 ~m~I~V---NG~~~~~--~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 18 LITISI---NDQSIQV--DISSSLAQIIAQLSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLF 78 (84)
T ss_pred eEEEEE---CCeEEEc--CCCCcHHHHHHHcCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEE
Confidence 366666 5666544 56778988877655 66666633 35566778899988876
No 148
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=70.08 E-value=11 Score=20.81 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=32.4
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|.| +|+...+ ++..|+.++-+.+. .++..+..+ ..+.+ +++|+.+.++-
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDSLGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVT 60 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHHcCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEe
Confidence 44444 5666555 46788988877665 666665332 22345 89999998763
No 149
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=69.53 E-value=11 Score=20.59 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=31.2
Q ss_pred CCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 45 TGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+|+.+.+ +...|+.++.+.+. .+|+.+..+ .-.++-+++|+.+.++-
T Consensus 4 Ng~~~~~--~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEV--EDGLTLAALLESLGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEc--CCCCcHHHHHHHcCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 5666544 46778999988776 566655322 23456788999988764
No 150
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=69.18 E-value=16 Score=21.92 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=33.3
Q ss_pred CEEEEeecCCCcHHHhhcccc--------------C--CCe-eCC-CCCcccccccCCCCEEEEEEe
Q 042212 47 KTITLEVESSDMIDNASRGSS--------------S--PAG-NFE-DGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~--------------~--~gk-~L~-d~~tL~~y~I~~~sti~l~~r 95 (97)
..++-.++..|||..++..+. | ++- .|. .+.|+.+.|+.+|-+|.+-.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCCccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 456778899999999888776 2 233 354 457999999999998877654
No 151
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=66.36 E-value=16 Score=20.41 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=30.4
Q ss_pred EEEEeecCCCcHHHhhcccc-----------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 48 TITLEVESSDMIDNASRGSS-----------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~-----------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
...++++...||.++.+.+. .||+... .++-+++|+.|.++-
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 46677777889999988775 2444444 456788999998864
No 152
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=62.35 E-value=11 Score=21.33 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.7
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.|-.++|+...+.+.|+.|+.+.-.++.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~ 31 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKAC 31 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHH
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHH
Confidence 45667889999999999999999877776
No 153
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=61.61 E-value=27 Score=19.59 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=33.5
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc--CCCeeCCCCCcccccccCCCCEEEE
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS--SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
.+.++. .|.+..+.++++.|-.+|+.+|+ |+-. ....+| .|.=.+|+.+.+
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~--~~~~~l-~Y~Dedgd~v~l 55 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLD--NQSFTL-KYQDEDGDLVSL 55 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCC--CCCeEE-EEECCCCCEEEe
Confidence 445544 56888999999999999999999 5421 123333 455455665543
No 154
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=60.46 E-value=8 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=12.0
Q ss_pred CCcccccccCCCCEEEE
Q 042212 76 GWTQADYNIQKESTLHF 92 (97)
Q Consensus 76 ~~tL~~y~I~~~sti~l 92 (97)
+++|+++||.+|+.+.+
T Consensus 50 ~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 50 PKKLSELGIVNGSILTV 66 (87)
T ss_dssp TSBGGGGT--TT-EEEE
T ss_pred cCChhHcCCCCCCEEEE
Confidence 57999999999998865
No 155
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=59.25 E-value=21 Score=27.48 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=42.9
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------------CCCee--CCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------------SPAGN--FEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------------~~gk~--L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|.+.+|..+|+ ..+++.++++...+-+++- -.|.. +..++|+.|.|++.|..+.+..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 56778887774 4789999999888777765 12332 3456799999999999998864
No 156
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=59.24 E-value=31 Score=19.51 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=29.0
Q ss_pred EEEEeecCC-CcHHHhhcccc--CCC--------eeCCCC-CcccccccCCCCEEEEEE
Q 042212 48 TITLEVESS-DMIDNASRGSS--SPA--------GNFEDG-WTQADYNIQKESTLHFVL 94 (97)
Q Consensus 48 ~~~l~v~~~-~tV~~lK~~I~--~~g--------k~L~d~-~tL~~y~I~~~sti~l~~ 94 (97)
...+++.+. .||.+|.+.+. |.+ ..+-|+ ..-.+.-+++|+.|.+..
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 357788766 89999998887 321 011111 111356678899888764
No 157
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=58.36 E-value=3.5 Score=27.97 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=24.6
Q ss_pred hccccCCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 63 SRGSSSPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 63 K~~I~~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
++++.|.|.+++.-+....+||+.+|.|.+.-++
T Consensus 7 ~~~i~YDGsqi~slWAy~~fgi~gdSIV~FrG~c 40 (183)
T PF04017_consen 7 DERIDYDGSQISSLWAYRNFGIQGDSIVVFRGPC 40 (183)
T ss_dssp SSE--BSSGGGSTTHHHHHH---SSEEEEEEEEE
T ss_pred CCCcCcChhhhhHHHHHHhcCCCCCeEEEEEcCc
Confidence 4566699999999999999999999998876543
No 158
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=58.03 E-value=19 Score=19.88 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=32.9
Q ss_pred EEEEeecCCCcHHHhhcccc--C-------------CCeeCCCCCcccccccCCCCEEEEEE
Q 042212 48 TITLEVESSDMIDNASRGSS--S-------------PAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~--~-------------~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
...+.+....||.++.+.+. | ||+...+ .-.+.-+++|+.|.++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 56778889999999998887 3 4554444 23456778999988864
No 159
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=57.54 E-value=23 Score=20.70 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=23.4
Q ss_pred EEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 40 FVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 40 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.|-.++|+...+.+.|++|+.++-+-..
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aC 30 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESAC 30 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHH
Confidence 4667899999999999999999876554
No 160
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=57.27 E-value=15 Score=22.09 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=36.5
Q ss_pred CeeeEEECC-CCCEEEEeecCCCcHHHhhcccc--------------------CCC-eeCCCCCcccccc-----cCCCC
Q 042212 36 RMQIFVKTS-TGKTITLEVESSDMIDNASRGSS--------------------SPA-GNFEDGWTQADYN-----IQKES 88 (97)
Q Consensus 36 ~m~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~--------------------~~g-k~L~d~~tL~~y~-----I~~~s 88 (97)
.+.|.|... .+.++++.++++.|+.++-+.+. .|- .-|..+.+|.+|. +..+-
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 355556555 56789999999999999877665 121 1245667777774 55666
Q ss_pred EEEEEEe
Q 042212 89 TLHFVLR 95 (97)
Q Consensus 89 ti~l~~r 95 (97)
.++|++.
T Consensus 96 ~~~L~Lv 102 (106)
T PF00794_consen 96 DPHLVLV 102 (106)
T ss_dssp -EEEEEE
T ss_pred CcEEEEE
Confidence 6666653
No 161
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=56.53 E-value=35 Score=19.27 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=33.2
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|++.++ |+. ++++...|+++|-+.+. .+|..+..+ --++.-+++|+.+.++
T Consensus 3 m~i~~n---g~~--~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv 62 (68)
T COG2104 3 MTIQLN---GKE--VEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVV 62 (68)
T ss_pred EEEEEC---CEE--EEcCCCCcHHHHHHHhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEE
Confidence 444443 555 55556689999988887 667666532 2355667777777665
No 162
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=56.24 E-value=12 Score=21.90 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=21.2
Q ss_pred CCCEEEEeecCCCcHHHhhcccc
Q 042212 45 TGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+|..+.+.+.++.+..+|+++|.
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~ 30 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIA 30 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 57789999999999999999999
No 163
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=55.53 E-value=19 Score=19.81 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=23.1
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.+.-+.+ +++.|.+ +|+.+.+
T Consensus 28 L~~lGl~~G~~i~v~~~~~~~~~~~i~~---~~~~i~L 62 (74)
T PF04023_consen 28 LADLGLTPGSEITVIRKNPFGGPVVIKV---DGSRIAL 62 (74)
T ss_dssp HHHCT-STTEEEEEEEEETTSSEEEEEE---TTEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEE---CCEEEEc
Confidence 9999999999999997654 4455554 2555554
No 164
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=53.61 E-value=13 Score=27.88 Aligned_cols=49 Identities=8% Similarity=0.065 Sum_probs=38.8
Q ss_pred CCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCC--CcccccccCCCCEEEEE
Q 042212 45 TGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDG--WTQADYNIQKESTLHFV 93 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~--~tL~~y~I~~~sti~l~ 93 (97)
..+.+++.+........++..++ |+++++.+. .++.+||...++++.+-
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 44677888887777888887776 999999654 78999999999887663
No 165
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=52.96 E-value=38 Score=21.98 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.4
Q ss_pred ecCCeeeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 33 LRGRMQIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 33 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
..+.++|++...+|...++++++..|+-+.-
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal 62 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHAL 62 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHHH
Confidence 3577999999999999999999999987643
No 166
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=52.37 E-value=34 Score=22.61 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=48.1
Q ss_pred eEEEecCccc--cccccccCCCcceeee----eec-CCeeeEEECCCCCEEEEeecC-CCcHHHhhcccc---------C
Q 042212 6 QRLVFADKSL--LADYNIQKESTLHLVA----RLR-GRMQIFVKTSTGKTITLEVES-SDMIDNASRGSS---------S 68 (97)
Q Consensus 6 q~L~~~~~~L--l~~y~i~~~s~i~l~~----~~~-~~m~i~vk~~~g~~~~l~v~~-~~tV~~lK~~I~---------~ 68 (97)
.|.+-+|..| -.-||-..|..+.-.- ... ..+.+.|+. | .+-++++. .+.+..+++-.. .
T Consensus 30 ~R~vi~Gp~LPk~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G-ri~lele~~~~~ie~I~~iCee~lpf~y~i~ 106 (153)
T PF02505_consen 30 RRVVIHGPRLPKTVPYGPARGTPVNHPDRKVINVGGEEVELTVKV--G-RIILELEDEEDVIEKIREICEEVLPFGYDIK 106 (153)
T ss_pred EEEEEECCCCCCCCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e-EEEEEecCcHHHHHHHHHHHHHhCCCceEee
Confidence 4566666666 6677777776544333 222 346666665 3 45677777 666777765544 5
Q ss_pred CCeeCCCCCccccc
Q 042212 69 PAGNFEDGWTQADY 82 (97)
Q Consensus 69 ~gk~L~d~~tL~~y 82 (97)
.|+-+....|++||
T Consensus 107 ~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 107 EGKFIRTKPTVTDY 120 (153)
T ss_pred eeEEeccCCchhhh
Confidence 68889999999987
No 167
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.49 E-value=24 Score=25.60 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCCeeCC-C--CCcccccccCCCCEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPAGNFE-D--GWTQADYNIQKESTLHF 92 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~-d--~~tL~~y~I~~~sti~l 92 (97)
....|-||..+|++++.++.+..|...+..-++ |--+.+. | ..+|...++-+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 458899999999999999999999999999888 2222231 1 35677777776666544
No 168
>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=49.69 E-value=48 Score=19.18 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=25.3
Q ss_pred CcceeeeeecCCeeeEEECCCCCEEEEeecC
Q 042212 25 STLHLVARLRGRMQIFVKTSTGKTITLEVES 55 (97)
Q Consensus 25 s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~ 55 (97)
.-+.+.+.....+++.+|..+|+.+.+++.+
T Consensus 15 k~v~l~v~~~~~~~l~lk~~t~r~~yl~L~~ 45 (77)
T PF12480_consen 15 KFVKLSVHDLEKQQLKLKLVTGRPFYLQLCA 45 (77)
T ss_pred cccEEEEEcCcccEEEEEEccCCEEEEEEeC
Confidence 3367777777889999999999999998654
No 169
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=49.10 E-value=12 Score=21.81 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.0
Q ss_pred EEEeecCCCcHHHhhcccc
Q 042212 49 ITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~ 67 (97)
++++++.+.|+.++|+.+-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw 20 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELW 20 (78)
T ss_dssp EEEEEETT-BHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHH
Confidence 5789999999999999877
No 170
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=48.90 E-value=5.9 Score=21.64 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=19.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
|.|.+.+.+|+.|.++.+.-..-.-++..++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~ 31 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLE 31 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHh
Confidence 5688899999999998543333333343343
No 171
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=46.03 E-value=9.8 Score=23.71 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=36.8
Q ss_pred CCCceEEEecCccccccccccCCCcceeeeeecCCeeeEEECCCCCEEEEe
Q 042212 2 PLEQQRLVFADKSLLADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLE 52 (97)
Q Consensus 2 p~~~q~L~~~~~~Ll~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~ 52 (97)
|-....|+| |+.-.+|-+|+.-|.+.+.-+...+|..+-..-+|..+.++
T Consensus 75 PGkAlClFF-GkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~dGe~v~ve 124 (126)
T COG2164 75 PGKALCLFF-GKTPMSDDKIQPASAVNVIGRIVKNLELLKSVDDGERVIVE 124 (126)
T ss_pred CCcEEEEEe-cCCcCcccccCccchHHHHHHHHhhHHhhhcccCCceEEEe
Confidence 445567777 66668999999999998887776777777666677766553
No 172
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=44.23 E-value=38 Score=20.18 Aligned_cols=34 Identities=9% Similarity=0.387 Sum_probs=26.5
Q ss_pred CCCCceEEEecCccc----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+..=+.+|+|+.+ +..-+|..|.+|.+.-+..
T Consensus 6 i~vkra~Vly~g~k~~i~d~~~~~v~Hge~VsffCknk 43 (85)
T PF09014_consen 6 IPVKRARVLYNGEKVWIQDLFKNGVLHGEIVSFFCKNK 43 (85)
T ss_dssp -SSSS-EEEETTEEEEHHHHTTT-BETT-EEEEEEEET
T ss_pred cceeEEEEEECCEEechhhcccCceeeCCEEEEEEcCC
Confidence 688899999999998 8889999999999888754
No 173
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=42.61 E-value=25 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 69 PAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 69 ~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
+-|..+|+.||+..+++-|+-+.+.+..
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~ 137 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITP 137 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecC
Confidence 3355688999999999999999998763
No 174
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=42.34 E-value=66 Score=18.35 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=15.6
Q ss_pred CEEEEeecCCCcHHHhhcccc
Q 042212 47 KTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~ 67 (97)
....++++ ..||.++.+.+.
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~ 35 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELM 35 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHH
Confidence 34667776 889999998887
No 175
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=42.32 E-value=52 Score=24.38 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=32.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|.| +|+. ++++...|+.++-+.+. .||+.+.-+ .-.++-+++|+.|.++
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII 60 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAELGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIV 60 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHHcCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEE
Confidence 44544 5665 44456778888877655 777776422 3445667888888765
No 176
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=41.84 E-value=31 Score=19.68 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.3
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVK 42 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk 42 (97)
|.+.|+..|+.+.+.-+.+ +++.+.++
T Consensus 26 L~~mGl~pG~~V~v~~~aP~gdPi~i~v~ 54 (74)
T PRK09555 26 LLSLGMLPGSSFNVVRVAPLGDPIHIETR 54 (74)
T ss_pred HHHcCCCCCCEEEEEEECCCCCCEEEEEC
Confidence 9999999999999988765 56666664
No 177
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=41.22 E-value=61 Score=18.72 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.6
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
|-.++|++..+.+.|..||.++-.++.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kll 30 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLC 30 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHH
Confidence 346789999999999999999877766
No 178
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.30 E-value=35 Score=23.51 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=29.1
Q ss_pred ccccc-CCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 18 DYNIQ-KESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 18 ~y~i~-~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
++|.+ .|+|+|++-..-++=.|..+ ..+.+.+.||.+++.++|.
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~Q------~~Vpv~~~Dt~etl~~RV~ 170 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIAQ------AAVPVLPGDTAETLEARVL 170 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEEE------EeeeecCCCCHHHHHHHHH
Confidence 45555 88999988753211122221 2467789999999999998
No 179
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=39.19 E-value=67 Score=21.17 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=46.8
Q ss_pred eEEEecCccc--cccccccCCCcceeeee----e-cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CC
Q 042212 6 QRLVFADKSL--LADYNIQKESTLHLVAR----L-RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SP 69 (97)
Q Consensus 6 q~L~~~~~~L--l~~y~i~~~s~i~l~~~----~-~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~ 69 (97)
.|.+-.|.-| -.-||--.|..+.-..| . +..|.+.|+. | .+-++++..+.+..+++-.. ..
T Consensus 29 ~R~vIhGp~LPk~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--G-rI~le~~~~~~i~~I~eiC~e~~pF~y~i~~ 105 (150)
T TIGR03260 29 LRVVIHGQRLPKKVPYGPARGLPVNHPDRKTIRVKGEDVELRVQV--G-RIILELEDEDIVEEIEEICKEMLPFGYEVRV 105 (150)
T ss_pred EEEEEECCCCCCCCCCCcccCCCCCCCcceEEEECCEEEEEEEEE--e-EEEEEecCHHHHHHHHHHHHhhCCCceEeee
Confidence 3555556666 55677777655544333 2 2336666664 3 44567767777777775554 45
Q ss_pred CeeCCCCCccccc
Q 042212 70 AGNFEDGWTQADY 82 (97)
Q Consensus 70 gk~L~d~~tL~~y 82 (97)
|+-+....|+.||
T Consensus 106 g~f~r~~~TvtDY 118 (150)
T TIGR03260 106 GKFLRTKPTVTDY 118 (150)
T ss_pred eeEeecCCchhhh
Confidence 7788899999987
No 180
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=39.18 E-value=19 Score=21.03 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=16.9
Q ss_pred EEEeecCCCcHHHhhcccc
Q 042212 49 ITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~ 67 (97)
+.+.|+.+.|+.++|+.+-
T Consensus 2 i~l~v~~~aTl~~IK~~lw 20 (78)
T smart00143 2 VTLRVLREATLSTIKHELF 20 (78)
T ss_pred eeEEccccccHHHHHHHHH
Confidence 4688999999999999987
No 181
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=38.93 E-value=36 Score=21.20 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
|+|.+.. +++.+..+...+.|..++.+++-
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~LP 30 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQLP 30 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-S
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhCC
Confidence 6777755 48899999999999999998887
No 182
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=38.66 E-value=15 Score=25.22 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=18.5
Q ss_pred CCEEEEeecCCCcHHHhhcccc
Q 042212 46 GKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 46 g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
|-.|.+.|.+++|.+++|++|+
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~ 153 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQ 153 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHH
T ss_pred CCCEEEEeeCCCcHHHHHHHHH
Confidence 6678899999999999999999
No 183
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=35.02 E-value=86 Score=18.48 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=20.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
.+|.+...+|+...+++++..|+.+.-
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tLLda~ 29 (97)
T TIGR02008 3 YKVTLVNPDGGEETIECPDDQYILDAA 29 (97)
T ss_pred EEEEEEECCCCEEEEEECCCCcHHHHH
Confidence 456676678888889999999987653
No 184
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=34.79 E-value=62 Score=19.35 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
++.|-.++|.++.+++..+++..++-+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~ 32 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALV 32 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHH
Confidence 455666789999999999999998877766
No 185
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=34.70 E-value=96 Score=18.02 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=39.8
Q ss_pred eeeecCCeeeEEECC-CCCEEEEeecCCCcHHHhhcccc----------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 30 VARLRGRMQIFVKTS-TGKTITLEVESSDMIDNASRGSS----------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 30 ~~~~~~~m~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~----------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.++..++..-|+... .+..+...+++..||+++=+.+- -||+.-.- +|-+++|+.+.+.-
T Consensus 5 ~~rf~~~L~~flp~~~r~~~~~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 5 TFRFYAELNDFLPPERRGGPFTHPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred EEEEchHHhhhcChhhcCCceEEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 344444444455332 35678889999999999877766 56665444 36778899888753
No 186
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=33.76 E-value=54 Score=25.64 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=44.0
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhccccCCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSSSPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|.-|=+..|+..+++-.+-= =++.|+..+|++++|.+.....=.--=+.+..+|+.+.... +..--|.+|.++++.+.
T Consensus 422 lG~YPv~pg~~~y~igsP~F-~~~~i~l~~g~~~~I~a~n~s~~n~YIqsv~lNGk~~~~~~-i~~~~i~~GG~L~f~mg 499 (502)
T PF07971_consen 422 LGFYPVNPGSPEYVIGSPLF-DKVTIHLGNGKTFTIEAKNNSAENIYIQSVTLNGKPLTRPW-ITHDDIMNGGTLEFEMG 499 (502)
T ss_dssp HTEE-SSTTSSEEEE---SS-SEEEEE-CCC-EEEEE-TT-BTTB-EEEEEEETTEEE-SSE-EEHHHHHC-EEEEEEEE
T ss_pred cCCCCCCCCCceEEEcCCcc-CeEEEEcCCCCEEEEEecCCCCCCceEeEEEECCEECcCCE-EeHHHHhCCCEEEEEeC
Confidence 55666777777776554321 25566668899999988755521111112229999997764 66667889999988764
No 187
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=33.05 E-value=71 Score=18.61 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=32.7
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeec-CCCcHHHhhcc
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVE-SSDMIDNASRG 65 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~-~~~tV~~lK~~ 65 (97)
...|...+...+.+.... ..=.|.+++.+ +++-+..+ ++..+++++++
T Consensus 51 ~G~F~~~~~G~~~~y~t~-~~~~i~I~t~~-~~y~isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 51 SGRFRNKGYGKVRLYATR-NKNVILIKTKD-KTYVISPEDPEEFIEALKKR 99 (100)
T ss_pred EEEEEeCCCcEEEEEEEC-CCCEEEEEECC-ceEEEcCCCHHHHHHHHHhc
Confidence 555566677778888776 45567777766 67767655 45567888765
No 188
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=33.03 E-value=91 Score=19.51 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.9
Q ss_pred cCCeeeEEECCCCC--EEEEeecCCCcHHHhhcccc
Q 042212 34 RGRMQIFVKTSTGK--TITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 34 ~~~m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~ 67 (97)
.|-|+++.+..+++ +-.+.|+++.|+.++-+.+-
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LL 56 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLS 56 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHH
Confidence 35699999998765 46788999999888765544
No 189
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=32.82 E-value=72 Score=19.41 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=22.4
Q ss_pred CeeeEEECCC-CCEEEEeecCCCcHHHhhcccc
Q 042212 36 RMQIFVKTST-GKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 36 ~m~i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.+.|.|...+ ..++++.+++++|+.++.+.+-
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l 49 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAF 49 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHH
Confidence 3444444433 3678999999999999877655
No 190
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=34 Score=25.08 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=36.0
Q ss_pred CCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 23 KESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 23 ~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.||.+--+++.-+..++.||......+.++|+++-.+.+++.-..
T Consensus 67 ~gsyvgev~k~m~k~kVLVKvhpegKyvvdv~k~i~i~~~~~~~r 111 (404)
T KOG0728|consen 67 PGSYVGEVVKAMGKKKVLVKVHPEGKYVVDVDKNIDISDVTPSSR 111 (404)
T ss_pred CcchHHHHHHhcCcceEEEEEcCCCcEEEeccCCCcHhhcCCcce
Confidence 566666677777788999988766778899999999999986544
No 191
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=32.79 E-value=56 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=23.9
Q ss_pred cccccccCCCcceeeeee-cCCeeeEEECC
Q 042212 16 LADYNIQKESTLHLVARL-RGRMQIFVKTS 44 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~-~~~m~i~vk~~ 44 (97)
++.|+.....-+||+... .|.+++||-..
T Consensus 155 ~n~C~F~g~~sLHlV~qge~GkVTlFivP~ 184 (232)
T PF11859_consen 155 ANHCDFQGVKSLHLVFQGEQGKVTLFIVPI 184 (232)
T ss_pred EeecCcCCCceeEEEEecCCCcEEEEEeec
Confidence 899999999999999974 46788888543
No 192
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=18 Score=26.99 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=38.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------C-CCeeC--CCCCcccccccCCCCE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------S-PAGNF--EDGWTQADYNIQKEST 89 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~-~gk~L--~d~~tL~~y~I~~~st 89 (97)
..|.||.++|+......-++++|.-+-.-.. + +.|-| ..+.|+.++||.+..+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 5599999999887777778888877755444 2 12333 4478999999998865
No 193
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=32.63 E-value=56 Score=20.58 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=16.2
Q ss_pred CCCCCcccccccCCCCEEEEEE
Q 042212 73 FEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 73 L~d~~tL~~y~I~~~sti~l~~ 94 (97)
-+|++||++.+..-|+.+.+.+
T Consensus 99 ~d~~kTL~~~~F~iGDyidvaI 120 (120)
T PF06487_consen 99 PDDNKTLADLRFVIGDYIDVAI 120 (120)
T ss_dssp TTTTSBCGGGT--TT-EEEEEE
T ss_pred CCcccCHhhCCcccCCEEEEeC
Confidence 4788999999999999988764
No 194
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=32.34 E-value=94 Score=17.26 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred eeEEECCCCCEEE-EeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTIT-LEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~ 67 (97)
.+.+... |.... +.+.++.|..+|+.+|+
T Consensus 3 ~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~ 32 (84)
T PF00564_consen 3 RVKVRYG-GDIRRIISLPSDVSFDDLRSKIR 32 (84)
T ss_dssp EEEEEET-TEEEEEEEECSTSHHHHHHHHHH
T ss_pred EEEEEEC-CeeEEEEEcCCCCCHHHHHHHHH
Confidence 4444443 34444 88888889999999999
No 195
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=30.18 E-value=51 Score=19.38 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.2
Q ss_pred CCCEEEEeecC--CCcHHHhhcccc
Q 042212 45 TGKTITLEVES--SDMIDNASRGSS 67 (97)
Q Consensus 45 ~g~~~~l~v~~--~~tV~~lK~~I~ 67 (97)
+|.+..+.++| +.+-.+|++.+.
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~ 32 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVK 32 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHH
Confidence 67888899988 779999999998
No 196
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=30.17 E-value=59 Score=18.69 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.7
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVK 42 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk 42 (97)
|.+.||-+|+.+.+.-+.+ +++.+.++
T Consensus 27 L~~mG~~~G~~i~vi~~aplgdPi~v~v~ 55 (75)
T COG1918 27 LLSMGIVPGASITVVRKAPLGDPILVEVR 55 (75)
T ss_pred HHHcCCCCCCEEEEEEecCCCCCEEEEEC
Confidence 8999999999999988765 34666664
No 197
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=30.03 E-value=63 Score=20.44 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=32.4
Q ss_pred EEEeecCCCcHHHhhcccc--------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 49 ITLEVESSDMIDNASRGSS--------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~--------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
..++++....+-++|.+=. |.|+...|..+++--+++.+..-.+
T Consensus 53 v~f~mDGe~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V 104 (132)
T PF15417_consen 53 VYFQMDGESGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVV 104 (132)
T ss_pred EEEEEcCccceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEE
Confidence 4566666666666666655 9999999999998888887765444
No 198
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=28.45 E-value=70 Score=21.21 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=19.3
Q ss_pred CCCCCEEEEeecCCCcHHHh-hcccc
Q 042212 43 TSTGKTITLEVESSDMIDNA-SRGSS 67 (97)
Q Consensus 43 ~~~g~~~~l~v~~~~tV~~l-K~~I~ 67 (97)
+.+|+.+.++++|..+..++ ++.+.
T Consensus 7 tvNG~~~~~~~~p~~~Ll~~LRd~l~ 32 (156)
T COG2080 7 TVNGEPVELDVDPRTPLLDVLRDELG 32 (156)
T ss_pred EECCeEEEEEeCCCChHHHHHHHhcC
Confidence 45899999999999987654 44555
No 199
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.67 E-value=54 Score=24.67 Aligned_cols=41 Identities=2% Similarity=-0.043 Sum_probs=29.8
Q ss_pred eecCCCcHHHhhcccc---------------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 52 EVESSDMIDNASRGSS---------------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 52 ~v~~~~tV~~lK~~I~---------------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
-++-.-||.++|.++. ++-.....+.+|..|+|++|+.+-+
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 3445668999998887 2223345577899999999998765
No 200
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=27.64 E-value=1.4e+02 Score=24.74 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=38.6
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.|+|=|+.|+. +.+....|+-|+-..|. +.|-..+...---+|.+++|++|.+.-
T Consensus 405 ~V~VfTPkG~~--~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 405 RVYVFTPKGDV--VDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred eEEEECCCCCe--EEcCCCCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEe
Confidence 58888999984 67778999999988887 222222222333567788999998753
No 201
>PRK11347 antitoxin ChpS; Provisional
Probab=27.20 E-value=1.3e+02 Score=17.55 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=26.8
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.++|+..|+++.+.+...+ |.++.. .+..|.++|-+.+.
T Consensus 21 l~~l~l~~G~~v~i~v~~~~---iii~p~---------~~~~tL~eLla~~~ 60 (83)
T PRK11347 21 MKELNLQPGQSVEAQVSNNQ---LILTPI---------SRRYSLDELLAQCD 60 (83)
T ss_pred HHHcCCCCCCEEEEEEECCE---EEEEEC---------CCCCCHHHHHhcCC
Confidence 89999999999998886432 333322 23357777766655
No 202
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=1.9e+02 Score=19.02 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=38.5
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------CC--CeeCCCCCcccccccCCC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------SP--AGNFEDGWTQADYNIQKE 87 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------~~--gk~L~d~~tL~~y~I~~~ 87 (97)
+.+|.+..-..+|++.+.+...+.|.+++-+.+- |+ -|+-.-.+.|+.-|...|
T Consensus 48 ~~tmk~rl~~v~g~~~tatLnD~atAkdfa~lLPLtl~~~DY~~~Eki~ylPrkLsT~g~P~g 110 (166)
T COG4925 48 GETMKRRLIQVNGETTTATLNDGATAKDFAELLPLTLDVEDYSNNEKIFYLPRKLSTTGTPMG 110 (166)
T ss_pred CCceEEEEEeeCCEEEEEEecCChhHHHHHHhCCeEEehhhccccceeccCchhcccCCCCcc
Confidence 3458887777899999999999999999988776 33 344444566666655444
No 203
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=26.97 E-value=1.4e+02 Score=18.35 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=20.2
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
+|++...+|+..++++.+..|+.+.-
T Consensus 2 ~V~fi~~~G~~~~v~~~~G~tLl~a~ 27 (117)
T PLN02593 2 SVTFVDKDGEERTVKAPVGMSLLEAA 27 (117)
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 45666778998999999998887653
No 204
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.93 E-value=1.2e+02 Score=21.28 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=14.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSD 57 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~ 57 (97)
+.|+++|++. +..-++|+|..
T Consensus 93 gkLqVyi~T~--knvLiEvnp~~ 113 (236)
T KOG3073|consen 93 GKLQVYIHTA--KNVLIEVNPQV 113 (236)
T ss_pred ceeEEEEEcc--CceEEEecccc
Confidence 5699999987 44556666654
No 205
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=26.93 E-value=61 Score=22.40 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=27.2
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCE---EEEeecCCCcHHHhhcccc
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKT---ITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~---~~l~v~~~~tV~~lK~~I~ 67 (97)
|...=-..|.++|.+...-+ .|+. ..+.|.++||++++-+|++
T Consensus 133 leagv~~~GctvHfV~EevD---------~G~iI~q~~v~V~~~Dt~esl~qrv~ 178 (206)
T KOG3076|consen 133 LEAGVKLSGCTVHFVIEEVD---------TGPIIAQMAVPVIPGDTLESLEQRVH 178 (206)
T ss_pred HHhccccccceEEEehhhcc---------CCCceEEEeeeecCCCCHHHHHHHHH
Confidence 33333345666666654322 2443 2467889999999999998
No 206
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=26.33 E-value=1.3e+02 Score=17.05 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=19.5
Q ss_pred CCCCEEEEeecCCCcHHHhhcccc
Q 042212 44 STGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 44 ~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.++...++.|++++|+.++=..+.
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l 36 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLL 36 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHH
Confidence 346788999999999998876665
No 207
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=26.10 E-value=51 Score=19.63 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.5
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+...+|.+|.++|..+.-+.+-|.-|+
T Consensus 40 itf~ngatfqvevpgsqhi~sqkk~ie 66 (102)
T PF01376_consen 40 ITFKNGATFQVEVPGSQHIDSQKKAIE 66 (102)
T ss_dssp EEETTS-EEEE--SSTTSTTTHHHHHH
T ss_pred EEecCCcEEEEecCCccchhhhHHHHH
Confidence 345589999999999988877776666
No 208
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=25.73 E-value=63 Score=15.97 Aligned_cols=12 Identities=8% Similarity=0.238 Sum_probs=7.8
Q ss_pred CceEEEecCccc
Q 042212 4 EQQRLVFADKSL 15 (97)
Q Consensus 4 ~~q~L~~~~~~L 15 (97)
.|..++|+|+..
T Consensus 6 ~qLTIfY~G~V~ 17 (36)
T PF06200_consen 6 AQLTIFYGGQVC 17 (36)
T ss_pred CcEEEEECCEEE
Confidence 456677777654
No 209
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=25.23 E-value=65 Score=19.77 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=21.4
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
++|-..+|++..++|....+-.++|.++-
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvL 31 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVL 31 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHH
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHH
Confidence 45667799999999999999999998887
No 210
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=24.45 E-value=1.4e+02 Score=19.80 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.8
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASR 64 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~ 64 (97)
..+.|+....+|+...+...-.+||.++-.
T Consensus 42 e~i~Itfv~~dG~~~~i~g~vGdtlLd~ah 71 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEIKIKGKVGDTLLDAAH 71 (159)
T ss_pred ceEEEEEECCCCCEEEeeeecchHHHHHHH
Confidence 348898899999999999999999988753
No 211
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=23.78 E-value=1.5e+02 Score=16.61 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=17.1
Q ss_pred EEEEeecCCCcHHHhhcccc
Q 042212 48 TITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~ 67 (97)
..++.|+++.|+.++-+.+.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l 37 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMAL 37 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
Confidence 78899999999999876665
No 212
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=23.70 E-value=1.4e+02 Score=16.48 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=27.0
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCC-EEEEee
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGK-TITLEV 53 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~-~~~l~v 53 (97)
+.++.+.+...+.+.-+..|.-.+.+-..+|+ ...++|
T Consensus 31 Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~~~~~~~~~V 69 (72)
T PF13629_consen 31 IADVTVLSPNEVYITGKKPGTTTLIVWDKDGRVIQTYDV 69 (72)
T ss_pred EEEEEEeCCCEEEEEEeCceeEEEEEECCCCCEEEEEEE
Confidence 67777777777777777777777777777777 444443
No 213
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=23.66 E-value=1.5e+02 Score=16.68 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.6
Q ss_pred CCEEEEeecCCCcHHHhhcccc
Q 042212 46 GKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 46 g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+...++.|+.++|..++-+.+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l 33 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLL 33 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHH
Confidence 6778999999999998876665
No 214
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=23.44 E-value=61 Score=27.51 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCEEEEeec-CCCcHHHhhcccc--------------CCCeeCCCCCcccccc
Q 042212 45 TGKTITLEVE-SSDMIDNASRGSS--------------SPAGNFEDGWTQADYN 83 (97)
Q Consensus 45 ~g~~~~l~v~-~~~tV~~lK~~I~--------------~~gk~L~d~~tL~~y~ 83 (97)
.|++.+++.+ ...|+++||..|+ -+|..+..++.++.|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 5888888887 4668999999998 6788888888888886
No 215
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=23.21 E-value=1.8e+02 Score=17.39 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=22.8
Q ss_pred eeeecCCeee-EEECCCCCEEEEeecCCC
Q 042212 30 VARLRGRMQI-FVKTSTGKTITLEVESSD 57 (97)
Q Consensus 30 ~~~~~~~m~i-~vk~~~g~~~~l~v~~~~ 57 (97)
....++.|.. +|+...|..+.++++|.|
T Consensus 33 la~isGKmR~~rIrIl~GD~V~VE~spYD 61 (87)
T PRK12442 33 GAYASGRMRKHRIRILAGDRVTLELSPYD 61 (87)
T ss_pred EEEeccceeeeeEEecCCCEEEEEECccc
Confidence 3456678888 889999999999998876
No 216
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.05 E-value=1.6e+02 Score=16.67 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.1
Q ss_pred cCCeeeEEECCCCCEEEEeecCCC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSD 57 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~ 57 (97)
.+...+.+...+|+.+.+.++|..
T Consensus 53 ~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 53 DGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred CCEEEEEEEECCCCEEEEEEcCCC
Confidence 345778888889999999998764
No 217
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=23.05 E-value=50 Score=18.52 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=18.5
Q ss_pred CCCcHHHhhccccCCCeeCCCCCcccccccCCCCEEEE
Q 042212 55 SSDMIDNASRGSSSPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 55 ~~~tV~~lK~~I~~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
..+++..+...+.-.|- ...|...|+++|++|.+
T Consensus 29 ~~e~~~rf~~~L~~~Gv----~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 29 DEESLRRFQRKLKKMGV----EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp TGGGHHHHHHHHHHTTH----HHHHHTTT--TT-EEEE
T ss_pred CHHHHHHHHHHHHHCCH----HHHHHHcCCCCCCEEEE
Confidence 44455555544443332 35788889999999875
No 218
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=22.58 E-value=95 Score=18.71 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=24.0
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
++-..|++..+.|+.+.|..+++.++.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~ 43 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLS 43 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHH
Confidence 456678999999999999999999988
No 219
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=22.56 E-value=72 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=14.5
Q ss_pred CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 68 SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 68 ~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
..++.|.|+.+++-.+|+.-+.-|+.
T Consensus 28 ~ekreL~~dd~vAIlnI~gTtSy~v~ 53 (87)
T PF05370_consen 28 IEKRELKDDDEVAILNIQGTTSYQVF 53 (87)
T ss_dssp TTT---SS--EEEEEE-TTTT-EEEE
T ss_pred hccccCCCCCcEEEEEecCCceEEEE
Confidence 67889999999999999766555544
No 220
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=22.43 E-value=2.2e+02 Score=18.18 Aligned_cols=70 Identities=17% Similarity=0.066 Sum_probs=45.1
Q ss_pred CCCcceeeeeecCCeeeE---EEC---CCCCE--EEEeecCCCcHHHhhcccc--CCCeeCCC--CCcc--------ccc
Q 042212 23 KESTLHLVARLRGRMQIF---VKT---STGKT--ITLEVESSDMIDNASRGSS--SPAGNFED--GWTQ--------ADY 82 (97)
Q Consensus 23 ~~s~i~l~~~~~~~m~i~---vk~---~~g~~--~~l~v~~~~tV~~lK~~I~--~~gk~L~d--~~tL--------~~y 82 (97)
+.|.+.+..+..+.|+.+ +.. ..|.. +.++..+...+++++..+. .+|.+|.. + +. ..|
T Consensus 5 ~~~~~~~~y~~cd~~~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e-~~C~~g~~~~s~C 83 (130)
T cd00915 5 NSSDLEFSYSSCDPMQDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSE-IICHGYLDKYSFC 83 (130)
T ss_pred cCCCcEEEeeeCCchheeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCc-ccccCCCcccccC
Confidence 456666677766666652 211 23444 4445568888899998888 66755542 2 34 578
Q ss_pred ccCCCCEEEEE
Q 042212 83 NIQKESTLHFV 93 (97)
Q Consensus 83 ~I~~~sti~l~ 93 (97)
.+..|.++...
T Consensus 84 P~~kGet~~Y~ 94 (130)
T cd00915 84 GALKGETVYYV 94 (130)
T ss_pred CccCCceEEEe
Confidence 89999988776
No 221
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=21.02 E-value=1.8e+02 Score=16.66 Aligned_cols=21 Identities=5% Similarity=0.079 Sum_probs=17.1
Q ss_pred CEEEEeecCCCcHHHhhcccc
Q 042212 47 KTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.|-.=.+|+.|+.+|+..|.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~ 23 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIE 23 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHH
Confidence 445556789999999999998
No 222
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=20.71 E-value=1.1e+02 Score=18.88 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=17.9
Q ss_pred CEEEEeecCCCcHHHhhcccc
Q 042212 47 KTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+++.+++++..||.++-.+|.
T Consensus 19 ~~y~v~~~~~~tVLd~L~~Ik 39 (110)
T PF13085_consen 19 QEYEVPVEPGMTVLDALNYIK 39 (110)
T ss_dssp EEEEEEGGSTSBHHHHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHH
Confidence 468888999999999888886
No 223
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=20.60 E-value=1.1e+02 Score=16.73 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=17.6
Q ss_pred CCCCCEEEEeecCCCc-HHHhhcc
Q 042212 43 TSTGKTITLEVESSDM-IDNASRG 65 (97)
Q Consensus 43 ~~~g~~~~l~v~~~~t-V~~lK~~ 65 (97)
+.+|+..++++.+.+| +.+.-.+
T Consensus 2 ~i~g~~~~~~~~~~~~~ll~~~~~ 25 (78)
T PF00111_consen 2 TINGKGVTVEVPPGETLLLDALER 25 (78)
T ss_dssp ETTTEEEEEEEETTSBBHHHHHHH
T ss_pred EECCeEEEEEeCCCccHHHHHHHH
Confidence 3578889999999998 7765543
No 224
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.54 E-value=1.7e+02 Score=16.06 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=21.9
Q ss_pred eEEECCCCCEEEEeec-CCCcHHHhhcccc
Q 042212 39 IFVKTSTGKTITLEVE-SSDMIDNASRGSS 67 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~ 67 (97)
+.++. +|..+.+.+. .+.|..+|+++|.
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~ 31 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIA 31 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHH
Confidence 34444 3577888888 8999999999999
No 225
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=20.03 E-value=90 Score=22.97 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCCCCEEEEeec-CCCcHHHhhcccc
Q 042212 43 TSTGKTITLEVE-SSDMIDNASRGSS 67 (97)
Q Consensus 43 ~~~g~~~~l~v~-~~~tV~~lK~~I~ 67 (97)
..+|+...+.+. .+..+..+|.++.
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~ 314 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIA 314 (341)
T ss_pred CCCCceeeeccccccccccccccccc
Confidence 567888888777 7888999999998
Done!