Query 042212
Match_columns 97
No_of_seqs 172 out of 1121
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.3E-30 4.3E-35 169.7 11.1 97 1-97 38-155 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 7.5E-30 2.6E-34 168.2 9.4 97 1-97 56-170 (172)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 4.3E-28 1.5E-32 155.7 10.4 97 1-97 36-150 (152)
4 4eew_A Large proline-rich prot 99.8 5.7E-21 2E-25 113.2 5.9 75 20-95 1-88 (88)
5 3phx_B Ubiquitin-like protein 99.8 2.9E-20 1E-24 108.1 7.2 64 34-97 2-78 (79)
6 3plu_A Ubiquitin-like modifier 99.8 2.6E-19 8.8E-24 107.6 6.5 64 30-93 15-91 (93)
7 3v6c_B Ubiquitin; structural g 99.8 3.4E-19 1.2E-23 106.3 7.1 64 34-97 15-91 (91)
8 4fbj_B NEDD8; effector-HOST ta 99.8 5.7E-19 1.9E-23 104.9 6.3 61 37-97 1-74 (88)
9 3dbh_I NEDD8; cell cycle, acti 99.8 1.2E-18 4E-23 102.8 6.5 64 34-97 10-86 (88)
10 2faz_A Ubiquitin-like containi 99.8 1.9E-18 6.7E-23 100.0 6.5 63 35-97 1-78 (78)
11 1ndd_A NEDD8, protein (ubiquit 99.7 3.3E-18 1.1E-22 98.0 6.8 61 37-97 1-74 (76)
12 3n3k_B Ubiquitin; hydrolase, p 99.7 2.6E-18 9E-23 100.6 5.8 63 35-97 2-77 (85)
13 3mtn_B UBA80, ubcep1, ubiquiti 99.7 5.3E-18 1.8E-22 99.2 6.9 63 35-97 2-77 (85)
14 4dwf_A HLA-B-associated transc 99.7 3.9E-18 1.3E-22 101.3 6.1 63 34-97 3-78 (90)
15 4hcn_B Polyubiquitin, ubiquiti 99.7 3.6E-18 1.2E-22 103.3 5.8 64 34-97 20-96 (98)
16 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 5.8E-18 2E-22 101.5 6.6 62 36-97 1-75 (96)
17 1v2y_A 3300001G02RIK protein; 99.7 4.3E-18 1.5E-22 104.6 5.7 63 35-97 6-97 (105)
18 2ojr_A Ubiquitin; lanthide-bin 99.7 8.7E-18 3E-22 103.7 6.9 80 18-97 9-109 (111)
19 2uyz_B Small ubiquitin-related 99.7 4E-18 1.4E-22 98.9 5.1 62 36-97 3-77 (79)
20 2hj8_A Interferon-induced 17 k 99.7 4.3E-18 1.5E-22 101.1 5.2 63 35-97 3-78 (88)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.6E-18 1.6E-22 100.2 5.2 64 34-97 5-81 (87)
22 1sif_A Ubiquitin; hydrophobic 99.7 7.1E-18 2.4E-22 100.2 6.0 63 35-97 8-83 (88)
23 3b1l_X E3 ubiquitin-protein li 99.6 3E-19 1E-23 102.9 0.0 61 37-97 1-74 (76)
24 3a9j_A Ubiquitin; protein comp 99.7 1E-17 3.5E-22 95.9 6.5 61 37-97 1-74 (76)
25 2kk8_A Uncharacterized protein 99.7 4.7E-18 1.6E-22 100.4 5.0 62 35-96 9-84 (84)
26 1wyw_B Ubiquitin-like protein 99.7 6.2E-18 2.1E-22 102.2 5.4 64 34-97 19-95 (97)
27 2dzi_A Ubiquitin-like protein 99.7 7.6E-18 2.6E-22 97.8 5.3 64 34-97 5-81 (81)
28 1uh6_A Ubiquitin-like 5; beta- 99.7 7.3E-18 2.5E-22 102.7 4.5 58 37-94 29-99 (100)
29 1wy8_A NP95-like ring finger p 99.7 1.8E-17 6.2E-22 98.1 6.1 63 35-97 6-83 (89)
30 3vdz_A Ubiquitin-40S ribosomal 99.7 3.6E-17 1.2E-21 101.0 7.2 63 35-97 34-109 (111)
31 2kan_A Uncharacterized protein 99.7 2.1E-17 7.2E-22 99.4 5.4 64 33-97 12-89 (94)
32 3m63_B Ubiquitin domain-contai 99.7 5E-18 1.7E-22 103.4 2.5 77 16-95 10-99 (101)
33 2l7r_A Ubiquitin-like protein 99.7 2E-17 6.9E-22 99.2 5.1 62 34-97 17-91 (93)
34 3m62_B UV excision repair prot 99.7 3.1E-17 1.1E-21 100.6 5.9 59 37-95 2-73 (106)
35 2wyq_A HHR23A, UV excision rep 99.7 7E-17 2.4E-21 94.6 6.9 63 34-96 3-81 (85)
36 2lxa_A Ubiquitin-like protein 99.7 1.1E-17 3.9E-22 99.5 3.2 60 37-96 2-78 (87)
37 3l0w_B Monoubiquitinated proli 99.7 6.4E-17 2.2E-21 106.5 6.5 61 37-97 1-74 (169)
38 1yx5_B Ubiquitin; proteasome, 99.7 8.3E-17 2.8E-21 97.0 6.5 61 37-97 1-74 (98)
39 1se9_A Ubiquitin family; ubiqu 99.7 8E-17 2.7E-21 101.6 6.6 70 28-97 8-104 (126)
40 4a20_A Ubiquitin-like protein 99.7 6.3E-17 2.1E-21 98.2 5.8 62 34-95 17-95 (98)
41 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.1E-16 3.8E-21 99.8 6.7 65 33-97 13-100 (116)
42 1we6_A Splicing factor, putati 99.7 9.5E-17 3.2E-21 99.0 6.3 65 33-97 24-105 (111)
43 2kdi_A Ubiquitin, vacuolar pro 99.7 1.7E-16 5.8E-21 98.5 6.8 64 34-97 7-83 (114)
44 3q3f_A Ribonuclease/ubiquitin 99.7 1.9E-16 6.5E-21 106.0 7.2 62 36-97 105-179 (189)
45 2bwf_A Ubiquitin-like protein 99.6 2.7E-16 9.3E-21 90.3 6.2 58 37-95 5-75 (77)
46 1wgd_A Homocysteine-responsive 99.6 1.1E-16 3.8E-21 95.7 4.6 63 35-97 6-87 (93)
47 2klc_A Ubiquilin-1; ubiquitin- 99.6 3.4E-16 1.2E-20 95.2 6.8 65 32-97 21-98 (101)
48 1ttn_A DC-UBP, dendritic cell- 99.6 1.4E-16 4.9E-21 97.5 5.2 63 34-96 21-96 (106)
49 1yqb_A Ubiquilin 3; structural 99.6 1.8E-16 6E-21 96.3 5.3 64 33-97 19-95 (100)
50 1uel_A HHR23B, UV excision rep 99.6 3.2E-16 1.1E-20 94.2 6.2 60 37-96 1-76 (95)
51 3u5e_m 60S ribosomal protein L 99.6 1.4E-17 4.7E-22 105.2 0.0 61 37-97 1-74 (128)
52 1wia_A Hypothetical ubiquitin- 99.6 3.8E-16 1.3E-20 93.6 6.1 62 35-96 6-78 (95)
53 3u30_A Ubiquitin, linear DI-ub 99.6 3.9E-16 1.3E-20 102.4 6.7 64 34-97 18-94 (172)
54 2gow_A HCG-1 protein, ubiquiti 99.6 4.1E-16 1.4E-20 98.4 6.5 64 34-97 15-101 (125)
55 1wx8_A Riken cDNA 4931431F19; 99.6 1.4E-16 4.9E-21 95.6 3.8 62 35-97 16-90 (96)
56 2kdb_A Homocysteine-responsive 99.6 2E-16 6.8E-21 96.2 3.7 60 34-93 21-99 (99)
57 1wju_A NEDD8 ultimate buster-1 99.6 3.1E-16 1.1E-20 95.4 4.4 59 38-97 17-92 (100)
58 3u5c_f 40S ribosomal protein S 99.6 3.5E-17 1.2E-21 106.3 0.0 61 37-97 1-74 (152)
59 2fnj_B Transcription elongatio 99.6 2.4E-16 8.3E-21 98.4 3.5 59 37-95 1-80 (118)
60 1j8c_A Ubiquitin-like protein 99.6 1E-15 3.4E-20 96.5 6.3 62 35-97 31-105 (125)
61 4ajy_B Transcription elongatio 99.6 4.4E-16 1.5E-20 97.1 4.4 60 37-96 1-81 (118)
62 1wx7_A Ubiquilin 3; ubiquitin- 99.6 9E-16 3.1E-20 93.8 4.8 62 35-97 16-90 (106)
63 3rt3_B Ubiquitin-like protein 99.6 2.2E-15 7.4E-20 97.5 6.1 60 36-95 2-76 (159)
64 1we7_A SF3A1 protein; structur 99.6 1.5E-15 5.2E-20 94.1 4.9 64 34-97 23-109 (115)
65 1v5o_A 1700011N24RIK protein; 99.6 1.4E-15 4.9E-20 92.4 4.6 63 35-97 6-86 (102)
66 3ai5_A Yeast enhanced green fl 99.6 4.5E-15 1.5E-19 105.6 6.9 64 34-97 231-307 (307)
67 3b08_A Polyubiquitin-C, ubiqui 99.6 7.7E-15 2.6E-19 93.6 6.5 60 37-96 1-73 (152)
68 4dbg_A Ranbp-type and C3HC4-ty 99.5 1.6E-14 5.6E-19 88.5 6.0 60 36-95 24-99 (105)
69 2dzj_A Synaptic glycoprotein S 99.5 2.1E-14 7.1E-19 85.4 4.2 57 36-92 10-85 (88)
70 2daf_A FLJ35834 protein; hypot 99.5 4.6E-14 1.6E-18 87.8 5.5 61 35-95 14-88 (118)
71 2xzm_9 RPS31E; ribosome, trans 99.5 3E-15 1E-19 100.1 0.0 56 37-97 1-69 (189)
72 2kd0_A LRR repeats and ubiquit 99.5 5.6E-14 1.9E-18 82.8 4.6 57 39-95 14-83 (85)
73 1oqy_A HHR23A, UV excision rep 99.4 6.4E-14 2.2E-18 101.8 5.2 63 35-97 6-85 (368)
74 2kdi_A Ubiquitin, vacuolar pro 99.4 8.1E-16 2.8E-20 95.4 -4.5 61 1-61 45-113 (114)
75 1x1m_A Ubiquitin-like protein 99.4 1.1E-13 3.8E-18 84.7 4.7 62 35-96 11-100 (107)
76 1v5t_A 8430435I17RIK protein; 99.4 7.6E-14 2.6E-18 83.0 3.8 60 35-95 6-82 (90)
77 1wgg_A Ubiquitin carboxyl-term 99.4 9.3E-14 3.2E-18 83.7 4.0 59 35-95 6-78 (96)
78 2dzm_A FAS-associated factor 1 99.4 1.1E-13 3.8E-18 84.2 3.7 59 36-95 8-81 (100)
79 1wxv_A BAG-family molecular ch 99.4 3E-13 1E-17 80.5 4.8 60 35-95 6-84 (92)
80 1v86_A DNA segment, CHR 7, way 99.4 3.1E-13 1E-17 81.2 3.8 59 35-95 16-87 (95)
81 4b6w_A Tubulin-specific chaper 99.3 9.4E-13 3.2E-17 77.9 4.8 53 43-95 11-83 (86)
82 1wf9_A NPL4 family protein; be 99.3 1E-12 3.5E-17 80.5 4.7 58 36-94 7-93 (107)
83 2kjr_A CG11242; UBL, ubiquitin 99.3 1.3E-12 4.4E-17 78.7 4.8 60 34-93 13-93 (95)
84 2io1_B Small ubiquitin-related 99.3 2.6E-12 8.8E-17 77.2 6.0 63 35-97 6-81 (94)
85 1yx5_B Ubiquitin; proteasome, 99.2 8E-12 2.7E-16 75.0 3.6 52 1-52 36-92 (98)
86 2kzr_A Ubiquitin thioesterase 99.2 1.1E-11 3.7E-16 73.0 3.8 56 37-93 1-75 (86)
87 2kj6_A Tubulin folding cofacto 99.2 1.1E-11 3.9E-16 74.8 3.8 60 35-94 13-94 (97)
88 2io0_B Small ubiquitin-related 99.2 3.8E-11 1.3E-15 71.7 6.0 63 35-97 4-79 (91)
89 1v6e_A Cytoskeleton-associated 99.2 3.6E-11 1.2E-15 71.9 4.9 57 37-93 8-85 (95)
90 1wm3_A Ubiquitin-like protein 99.1 9.9E-11 3.4E-15 66.8 5.7 57 37-93 2-71 (72)
91 3phx_B Ubiquitin-like protein 99.1 3.3E-11 1.1E-15 69.4 3.6 35 1-35 40-79 (79)
92 2d07_B Ubiquitin-like protein 99.1 1.3E-10 4.5E-15 69.5 6.2 63 35-97 16-91 (93)
93 1wz0_A Ubiquitin-like protein 99.1 2E-10 6.7E-15 70.2 6.0 63 35-97 23-98 (104)
94 1t0y_A Tubulin folding cofacto 99.1 1.3E-10 4.5E-15 72.5 4.7 60 35-94 5-85 (122)
95 3shq_A UBLCP1; phosphatase, hy 99.1 1.9E-10 6.4E-15 82.2 5.8 59 35-94 4-78 (320)
96 3l0w_B Monoubiquitinated proli 99.1 1.8E-10 6.2E-15 75.6 5.0 61 1-61 36-104 (169)
97 2eke_C Ubiquitin-like protein 99.1 3.2E-10 1.1E-14 69.5 5.6 62 35-97 30-104 (106)
98 4ajy_B Transcription elongatio 99.0 1E-10 3.5E-15 72.8 3.2 35 1-35 37-83 (118)
99 4fbj_B NEDD8; effector-HOST ta 99.0 9.6E-11 3.3E-15 69.1 2.9 37 1-37 36-77 (88)
100 3a4r_A Nfatc2-interacting prot 99.0 6.1E-10 2.1E-14 64.7 5.9 60 34-93 5-78 (79)
101 1wju_A NEDD8 ultimate buster-1 99.0 9.6E-11 3.3E-15 71.1 2.1 34 1-35 55-93 (100)
102 2k8h_A Small ubiquitin protein 99.0 2.6E-10 8.8E-15 70.3 3.9 64 34-97 24-100 (110)
103 2uyz_B Small ubiquitin-related 99.0 1.3E-10 4.4E-15 66.8 2.2 35 1-35 39-78 (79)
104 1wyw_B Ubiquitin-like protein 99.0 1.6E-10 5.4E-15 69.4 2.6 36 1-36 57-97 (97)
105 2faz_A Ubiquitin-like containi 99.0 3.1E-10 1.1E-14 65.0 3.4 34 1-34 40-78 (78)
106 3q3f_A Ribonuclease/ubiquitin 99.0 1.1E-10 3.8E-15 78.0 1.6 43 1-43 141-188 (189)
107 3plu_A Ubiquitin-like modifier 99.0 2.8E-10 9.6E-15 68.1 3.2 31 1-31 57-92 (93)
108 1ndd_A NEDD8, protein (ubiquit 99.0 3.7E-10 1.3E-14 64.0 3.5 35 1-35 36-75 (76)
109 2fnj_B Transcription elongatio 99.0 2.3E-10 7.8E-15 71.3 2.4 35 1-35 37-83 (118)
110 3dbh_I NEDD8; cell cycle, acti 99.0 2.4E-10 8.2E-15 66.7 2.3 36 1-36 48-88 (88)
111 4hcn_B Polyubiquitin, ubiquiti 98.9 3.7E-10 1.3E-14 67.8 2.8 36 1-36 58-98 (98)
112 3v6c_B Ubiquitin; structural g 98.9 4.2E-10 1.4E-14 66.5 2.8 34 1-34 53-91 (91)
113 2daf_A FLJ35834 protein; hypot 98.9 3.5E-10 1.2E-14 70.3 2.5 47 1-47 52-103 (118)
114 3k9o_B Ubiquitin, UBB+1; E2-25 98.9 6.4E-10 2.2E-14 66.1 3.5 40 1-40 37-81 (96)
115 2kk8_A Uncharacterized protein 98.9 4.2E-10 1.4E-14 66.0 2.5 32 1-32 46-83 (84)
116 3n3k_B Ubiquitin; hydrolase, p 98.9 6.6E-10 2.2E-14 64.4 3.1 36 1-36 39-79 (85)
117 3a9j_A Ubiquitin; protein comp 98.9 9.2E-10 3.2E-14 62.3 3.6 36 1-36 36-76 (76)
118 2l7r_A Ubiquitin-like protein 98.9 3.9E-10 1.3E-14 67.2 2.1 36 1-36 53-93 (93)
119 4dwf_A HLA-B-associated transc 98.9 7E-10 2.4E-14 65.2 3.1 35 1-36 41-80 (90)
120 4eew_A Large proline-rich prot 98.9 7E-10 2.4E-14 65.0 2.9 31 1-32 53-88 (88)
121 3vdz_A Ubiquitin-40S ribosomal 98.9 9E-10 3.1E-14 67.6 3.5 36 1-36 71-111 (111)
122 2hj8_A Interferon-induced 17 k 98.9 4.8E-10 1.6E-14 66.0 2.2 36 1-36 40-80 (88)
123 4a20_A Ubiquitin-like protein 98.9 8.2E-10 2.8E-14 66.7 3.2 34 1-34 58-97 (98)
124 1wgd_A Homocysteine-responsive 98.9 4.4E-10 1.5E-14 66.7 2.0 36 1-36 47-89 (93)
125 1wy8_A NP95-like ring finger p 98.9 8.1E-10 2.8E-14 64.8 2.9 36 1-36 45-85 (89)
126 1wgh_A Ubiquitin-like 3, HCG-1 98.9 1E-09 3.5E-14 68.2 3.4 35 1-35 60-101 (116)
127 2lxa_A Ubiquitin-like protein 98.9 5.8E-10 2E-14 66.0 2.1 33 1-33 40-78 (87)
128 2wyq_A HHR23A, UV excision rep 98.9 1.2E-09 4.3E-14 63.3 3.4 34 1-34 44-82 (85)
129 1se9_A Ubiquitin family; ubiqu 98.9 1.1E-09 3.9E-14 68.8 3.4 36 1-36 58-106 (126)
130 3b1l_X E3 ubiquitin-protein li 98.4 2E-10 7E-15 65.4 0.0 35 1-35 36-75 (76)
131 1sif_A Ubiquitin; hydrophobic 98.9 9.3E-10 3.2E-14 64.8 2.8 36 1-36 45-85 (88)
132 2kan_A Uncharacterized protein 98.9 8.3E-10 2.8E-14 65.9 2.5 36 1-36 50-91 (94)
133 1wh3_A 59 kDa 2'-5'-oligoadeny 98.9 8.7E-10 3E-14 64.3 2.5 36 1-36 43-83 (87)
134 1we7_A SF3A1 protein; structur 98.9 1E-09 3.5E-14 67.7 2.9 36 1-36 71-111 (115)
135 3mtn_B UBA80, ubcep1, ubiquiti 98.9 1.3E-09 4.3E-14 63.1 3.1 36 1-36 39-79 (85)
136 1we6_A Splicing factor, putati 98.9 1.2E-09 4.1E-14 66.9 2.9 36 1-36 67-107 (111)
137 2dzi_A Ubiquitin-like protein 98.9 1.4E-09 4.9E-14 62.4 3.1 33 1-33 43-80 (81)
138 1uel_A HHR23B, UV excision rep 98.8 2.7E-09 9.2E-14 63.6 3.8 34 1-34 39-77 (95)
139 3m62_B UV excision repair prot 98.8 1.5E-09 5.1E-14 66.1 2.7 35 1-35 37-76 (106)
140 1yqb_A Ubiquilin 3; structural 98.8 2.1E-09 7.1E-14 64.9 2.7 35 1-35 57-96 (100)
141 4b6w_A Tubulin-specific chaper 98.8 3E-09 1E-13 62.7 3.0 34 1-34 40-85 (86)
142 2bwf_A Ubiquitin-like protein 98.8 4E-09 1.4E-13 59.9 3.4 32 1-32 39-75 (77)
143 2klc_A Ubiquilin-1; ubiquitin- 98.8 5E-09 1.7E-13 63.2 3.6 35 1-35 60-99 (101)
144 2ojr_A Ubiquitin; lanthide-bin 98.8 5.3E-09 1.8E-13 64.0 3.7 35 1-35 71-110 (111)
145 3m63_B Ubiquitin domain-contai 98.8 2.3E-09 8E-14 64.8 1.7 33 1-33 63-100 (101)
146 3u5e_m 60S ribosomal protein L 98.7 1.1E-09 3.8E-14 68.7 0.0 36 1-36 36-76 (128)
147 1ttn_A DC-UBP, dendritic cell- 98.7 4.6E-09 1.6E-13 63.8 2.7 34 1-34 59-97 (106)
148 1wx8_A Riken cDNA 4931431F19; 98.7 1.5E-09 5E-14 64.7 0.4 36 1-36 52-92 (96)
149 1j8c_A Ubiquitin-like protein 98.7 6.3E-09 2.1E-13 65.2 3.2 36 1-36 67-107 (125)
150 3u5c_f 40S ribosomal protein S 98.7 1.3E-09 4.5E-14 70.5 0.0 36 1-36 36-76 (152)
151 1wx7_A Ubiquilin 3; ubiquitin- 98.7 5.9E-09 2E-13 63.3 2.5 36 1-36 52-92 (106)
152 2gow_A HCG-1 protein, ubiquiti 98.7 9E-09 3.1E-13 64.6 3.4 34 2-35 62-102 (125)
153 1x1m_A Ubiquitin-like protein 98.7 8.5E-09 2.9E-13 62.8 2.8 34 1-34 62-101 (107)
154 2kd0_A LRR repeats and ubiquit 98.7 8E-09 2.8E-13 60.5 2.6 32 1-32 47-83 (85)
155 1wjn_A Tubulin-folding protein 98.7 4.4E-08 1.5E-12 58.5 5.8 58 37-94 10-91 (97)
156 1v2y_A 3300001G02RIK protein; 98.7 4.3E-09 1.5E-13 64.3 0.9 33 4-36 61-99 (105)
157 4dbg_A Ranbp-type and C3HC4-ty 98.6 1.9E-08 6.6E-13 61.4 3.3 33 1-33 62-100 (105)
158 1v5o_A 1700011N24RIK protein; 98.6 6.2E-09 2.1E-13 62.9 1.0 36 1-36 47-88 (102)
159 1wxv_A BAG-family molecular ch 98.6 1.8E-08 6E-13 59.5 1.8 34 1-34 47-86 (92)
160 2kj6_A Tubulin folding cofacto 98.5 3.2E-08 1.1E-12 59.5 2.4 32 1-32 52-95 (97)
161 3kyd_D Small ubiquitin-related 98.5 2.6E-07 8.8E-12 57.2 6.4 61 35-95 39-112 (115)
162 2kjr_A CG11242; UBL, ubiquitin 98.5 3.9E-08 1.3E-12 58.9 2.2 30 1-30 53-93 (95)
163 1t0y_A Tubulin folding cofacto 98.5 6.4E-08 2.2E-12 60.2 3.1 61 1-64 43-121 (122)
164 1wia_A Hypothetical ubiquitin- 98.5 7.5E-08 2.6E-12 57.1 2.6 33 3-35 42-80 (95)
165 1wgg_A Ubiquitin carboxyl-term 98.5 3.9E-08 1.3E-12 58.8 1.2 34 1-34 43-80 (96)
166 1v5t_A 8430435I17RIK protein; 98.4 8.3E-08 2.8E-12 56.6 1.7 33 1-33 43-83 (90)
167 2pjh_A Protein NPL4, nuclear p 98.4 2.4E-07 8.2E-12 53.8 3.2 58 35-93 3-78 (80)
168 3ai5_A Yeast enhanced green fl 98.4 1.5E-07 5.2E-12 66.9 2.8 33 1-33 269-306 (307)
169 1v86_A DNA segment, CHR 7, way 98.3 4.8E-08 1.6E-12 58.2 -0.5 33 1-33 52-88 (95)
170 1v6e_A Cytoskeleton-associated 98.3 1.6E-07 5.3E-12 55.9 1.6 32 1-32 44-87 (95)
171 3pge_A SUMO-modified prolifera 98.3 1.3E-06 4.5E-11 58.7 6.0 61 35-96 28-101 (200)
172 2dzj_A Synaptic glycoprotein S 98.3 1.9E-07 6.4E-12 55.1 1.2 29 1-29 50-85 (88)
173 1oqy_A HHR23A, UV excision rep 98.3 5.2E-07 1.8E-11 65.5 3.6 35 1-35 46-86 (368)
174 3tix_A Ubiquitin-like protein 98.2 1.7E-06 5.7E-11 58.0 4.9 60 36-96 57-129 (207)
175 2io1_B Small ubiquitin-related 98.2 8.4E-07 2.9E-11 52.9 3.1 36 1-36 43-83 (94)
176 2dzm_A FAS-associated factor 1 98.2 2.5E-07 8.4E-12 55.9 0.1 32 1-33 44-82 (100)
177 2xzm_9 RPS31E; ribosome, trans 98.1 3.2E-07 1.1E-11 61.2 0.0 36 1-36 36-71 (189)
178 2io0_B Small ubiquitin-related 98.0 6.5E-06 2.2E-10 48.8 3.5 36 1-36 41-81 (91)
179 2d07_B Ubiquitin-like protein 98.0 5E-06 1.7E-10 49.4 2.9 35 1-35 53-92 (93)
180 3v7o_A Minor nucleoprotein VP3 97.9 1.3E-06 4.3E-11 59.3 0.0 62 34-96 19-93 (227)
181 1wf9_A NPL4 family protein; be 97.9 2.6E-06 8.8E-11 51.7 0.5 33 1-33 43-95 (107)
182 3shq_A UBLCP1; phosphatase, hy 97.8 4.4E-06 1.5E-10 59.6 1.5 35 1-35 40-82 (320)
183 1wm3_A Ubiquitin-like protein 97.8 1E-05 3.5E-10 45.7 2.6 31 1-31 37-72 (72)
184 1wz0_A Ubiquitin-like protein 97.8 8.5E-06 2.9E-10 49.4 1.7 36 1-36 60-100 (104)
185 2eke_C Ubiquitin-like protein 97.7 1.8E-05 6.2E-10 48.1 2.9 35 1-35 66-105 (106)
186 4e71_A Plexin-B2, MM1; transme 97.7 5.3E-05 1.8E-09 46.4 4.8 50 46-95 23-110 (111)
187 3goe_A DNA repair protein RAD6 97.7 0.00011 3.6E-09 42.5 5.8 58 37-94 10-81 (82)
188 2k8h_A Small ubiquitin protein 97.7 1.1E-05 3.8E-10 49.4 1.2 37 1-37 62-103 (110)
189 2kc2_A Talin-1, F1; FERM, adhe 97.6 0.00011 3.7E-09 46.1 4.8 58 38-95 13-122 (128)
190 3a4r_A Nfatc2-interacting prot 97.6 3.2E-05 1.1E-09 44.4 2.1 30 1-30 44-78 (79)
191 2kzr_A Ubiquitin thioesterase 97.5 3.4E-05 1.1E-09 44.8 1.5 33 1-33 36-78 (86)
192 3qx1_A FAS-associated factor 1 97.5 0.00036 1.2E-08 40.3 5.8 60 35-94 6-82 (84)
193 2jxx_A Nfatc2-interacting prot 97.5 0.00019 6.6E-09 42.9 4.6 59 35-93 24-96 (97)
194 1wjn_A Tubulin-folding protein 97.5 6.5E-05 2.2E-09 44.5 2.5 34 1-34 48-94 (97)
195 3h6n_A Plexin-D1; structural g 97.4 0.00052 1.8E-08 42.9 6.6 51 45-95 15-104 (127)
196 2al3_A TUG long isoform; TUG U 97.4 0.00022 7.5E-09 42.1 4.5 62 34-95 7-81 (90)
197 2r2o_A Plexin-B1; effector dom 97.4 0.00031 1.1E-08 44.5 4.9 50 47-96 41-129 (138)
198 3ix6_A TS, tsase, thymidylate 97.4 2.8E-05 9.5E-10 56.3 0.0 62 34-96 19-93 (360)
199 2bps_A YUKD protein; ubiquitin 97.3 0.00044 1.5E-08 40.1 5.0 49 44-92 14-80 (81)
200 4e74_A Plexin-A4; RBD, structu 97.3 0.00043 1.5E-08 42.8 4.6 50 46-95 26-114 (117)
201 2dzk_A UBX domain-containing p 97.1 0.0021 7E-08 39.0 6.2 60 35-94 12-89 (109)
202 3uf8_A Ubiquitin-like protein 97.0 0.0013 4.4E-08 44.1 5.5 64 31-95 16-92 (209)
203 3pge_A SUMO-modified prolifera 96.9 0.0019 6.4E-08 43.3 5.7 55 1-56 64-127 (200)
204 1wj4_A KIAA0794 protein; UBX d 96.7 0.0037 1.3E-07 38.7 5.5 60 34-93 41-117 (124)
205 4da1_A Protein phosphatase 1K, 96.7 0.00026 9E-09 51.2 0.0 60 36-96 30-102 (389)
206 2cr5_A Reproduction 8; UBX dom 96.6 0.0039 1.3E-07 37.6 5.0 60 35-94 22-97 (109)
207 3ivf_A Talin-1; FERM domain, c 96.5 0.014 4.9E-07 41.7 8.0 77 16-95 68-167 (371)
208 1s3s_G P47 protein; AAA ATPase 96.5 0.0039 1.3E-07 38.7 4.4 56 35-90 51-123 (127)
209 2l76_A Nfatc2-interacting prot 96.4 0.0081 2.8E-07 35.7 5.3 58 36-94 21-91 (95)
210 3kuz_A Plexin-C1; structural g 96.4 0.0091 3.1E-07 37.2 5.6 48 47-94 39-125 (126)
211 3kyd_D Small ubiquitin-related 96.2 0.0046 1.6E-07 38.0 3.5 32 1-32 76-112 (115)
212 3ig3_A Plxna3 protein; plexin 96.1 0.013 4.6E-07 45.0 6.4 59 37-95 234-334 (627)
213 1uh6_A Ubiquitin-like 5; beta- 95.8 0.0031 1.1E-07 37.8 1.4 15 1-15 64-78 (100)
214 3hm6_X Plexin-B1; structural g 95.8 0.019 6.4E-07 44.3 6.0 49 47-95 274-361 (644)
215 2kdb_A Homocysteine-responsive 95.8 0.0028 9.5E-08 37.8 1.0 14 2-15 64-77 (99)
216 3tix_A Ubiquitin-like protein 95.4 0.0057 2E-07 40.9 1.7 36 1-36 92-132 (207)
217 3ivf_A Talin-1; FERM domain, c 95.3 0.042 1.4E-06 39.2 6.1 57 38-95 5-84 (371)
218 4efo_A Serine/threonine-protei 94.8 0.012 4.1E-07 34.9 1.7 15 1-15 49-63 (94)
219 3v7o_A Minor nucleoprotein VP3 94.5 0.0068 2.3E-07 41.1 0.1 36 1-36 56-96 (227)
220 2l32_A Small archaeal modifier 94.3 0.16 5.6E-06 28.4 5.7 51 37-93 1-60 (74)
221 4efo_A Serine/threonine-protei 94.2 0.069 2.4E-06 31.6 4.0 42 43-84 20-76 (94)
222 2daj_A KIAA0977 protein, COBL- 93.8 0.047 1.6E-06 31.8 2.6 52 35-86 9-76 (91)
223 3ix6_A TS, tsase, thymidylate 92.1 0.024 8.1E-07 41.1 -0.3 38 1-38 56-98 (360)
224 2kmm_A Guanosine-3',5'-BIS(dip 91.5 0.59 2E-05 25.2 5.2 50 37-93 1-61 (73)
225 1ef1_A Moesin; membrane, FERM 91.5 0.49 1.7E-05 32.4 5.9 60 36-96 1-79 (294)
226 3goe_A DNA repair protein RAD6 91.1 0.22 7.6E-06 28.5 3.1 31 1-31 45-81 (82)
227 1h4r_A Merlin; FERM, neurofibr 90.2 0.71 2.4E-05 32.0 5.7 62 34-96 20-99 (314)
228 1ryj_A Unknown; beta/alpha pro 89.9 1.4 4.9E-05 23.9 6.4 53 36-94 4-65 (70)
229 2inc_C TOUB protein; DIIRON, 4 88.4 0.89 3.1E-05 26.1 4.2 46 49-94 15-81 (83)
230 2i1j_A Moesin; FERM, coiled-co 87.6 1.5 5.1E-05 33.4 6.3 62 34-96 2-82 (575)
231 2kmc_A Fermitin family homolog 86.1 1.6 5.4E-05 26.0 4.5 60 36-95 19-99 (102)
232 4da1_A Protein phosphatase 1K, 85.9 0.15 5.1E-06 36.7 0.0 41 1-41 65-110 (389)
233 3uf8_A Ubiquitin-like protein 85.8 1.7 5.9E-05 28.7 5.2 35 1-35 56-95 (209)
234 3jyu_A Ubiquitin carboxyl-term 85.1 1.3 4.4E-05 29.8 4.4 48 48-95 153-220 (231)
235 3ge3_C Toluene-4-monooxygenase 84.7 0.88 3E-05 26.2 2.9 46 49-94 17-82 (84)
236 2kl0_A Putative thiamin biosyn 84.5 0.56 1.9E-05 26.0 2.0 50 37-93 1-59 (73)
237 1tyg_B YJBS; alpha beta barrel 84.4 1.1 3.7E-05 25.8 3.3 54 35-94 19-82 (87)
238 3qij_A Protein 4.1; cytoskelet 83.9 1.8 6.1E-05 29.9 4.8 60 35-94 16-94 (296)
239 1wgr_A Growth factor receptor- 83.5 2.5 8.5E-05 25.0 4.6 33 35-67 8-40 (100)
240 2juo_A GA-binding protein alph 82.6 3.1 0.00011 24.0 4.6 47 49-95 5-64 (89)
241 4a3p_A Ubiquitin carboxyl-term 81.7 1.4 4.8E-05 29.3 3.4 48 48-95 141-208 (217)
242 1vjk_A Molybdopterin convertin 80.2 6.3 0.00022 22.5 6.0 61 34-94 7-93 (98)
243 3hvz_A Uncharacterized protein 77.7 7.2 0.00024 21.8 5.4 49 38-93 7-66 (78)
244 2k5p_A THis protein, thiamine- 69.5 2.1 7.2E-05 23.9 1.5 53 37-93 1-63 (78)
245 1f0z_A THis protein; ubiquitin 69.2 2.2 7.5E-05 22.7 1.5 52 37-94 1-61 (66)
246 2ddz_A 190AA long hypothetical 67.9 1.1 3.9E-05 29.5 0.1 36 61-96 9-44 (190)
247 2lgx_A Fermitin family homolog 65.3 1.4 4.8E-05 26.6 0.1 58 35-93 25-100 (112)
248 2k5l_A FEOA; structure, NESG, 62.2 7.7 0.00026 21.4 2.9 33 16-51 28-62 (81)
249 2k4y_A FEOA-like protein; GFT 59.5 10 0.00034 21.2 3.1 33 16-51 31-65 (86)
250 3e19_A FEOA; transcriptional r 57.7 11 0.00037 20.4 3.0 33 16-51 31-64 (77)
251 3lxf_A Ferredoxin; iron, iron- 57.1 17 0.00058 20.9 3.9 26 38-63 2-27 (104)
252 3rpf_C Molybdopterin convertin 56.9 14 0.00046 19.9 3.3 43 51-94 16-69 (74)
253 3dwg_C 9.5 kDa culture filtrat 56.8 17 0.00059 20.3 3.9 45 50-95 20-89 (93)
254 2wlb_A ETP1-FD, electron trans 56.8 24 0.00083 20.0 4.6 28 36-63 3-30 (103)
255 2v1y_A Phosphatidylinositol-4, 56.5 15 0.00051 22.0 3.6 33 35-67 18-50 (108)
256 3mhx_A Putative ferrous iron t 56.2 6.5 0.00022 21.9 1.9 33 16-51 31-66 (85)
257 2gcx_A FEOA, ferrous iron tran 54.0 11 0.00038 20.2 2.6 34 16-52 26-61 (75)
258 1t3q_A Quinoline 2-oxidoreduct 52.7 14 0.00047 23.4 3.2 30 35-65 8-37 (168)
259 1oey_A P67-PHOX, neutrophil cy 52.6 21 0.00071 20.2 3.6 31 35-67 4-34 (83)
260 2lx9_A Ferrous iron transport 51.7 8.8 0.0003 21.4 2.0 33 16-51 26-60 (83)
261 1xao_A YDJ1, mitochondrial pro 51.3 26 0.00087 20.9 4.2 35 22-56 4-43 (121)
262 2k5f_A Ferrous iron transport 50.5 16 0.00055 21.3 3.1 32 16-50 27-60 (105)
263 2bt6_A Adrenodoxin 1; rutheniu 49.2 29 0.00098 19.9 4.1 26 37-62 7-32 (108)
264 3au4_A Myosin-X; protein-prote 46.7 19 0.00064 26.8 3.6 33 35-67 215-247 (555)
265 1n62_A Carbon monoxide dehydro 45.6 18 0.00061 23.1 2.9 28 37-65 4-31 (166)
266 2h3j_A Hypothetical protein PA 44.5 7.7 0.00026 20.8 0.9 26 16-41 27-54 (75)
267 2cu3_A Unknown function protei 44.5 21 0.00072 18.6 2.7 46 45-94 5-59 (64)
268 3po0_A Small archaeal modifier 43.9 39 0.0013 18.5 4.6 48 47-94 18-84 (89)
269 1q1o_A Cell division control p 43.8 33 0.0011 20.1 3.6 58 35-92 4-72 (98)
270 2y5c_A Adrenodoxin-like protei 43.5 40 0.0014 19.3 4.1 26 37-62 6-31 (109)
271 3q1c_A LEE-encoded effector ES 43.4 51 0.0018 23.2 5.1 38 20-57 60-97 (360)
272 1ltr_D ETB-R2, heat-labIle ent 43.0 16 0.00053 21.3 2.1 27 41-67 40-66 (113)
273 3hrd_D Nicotinate dehydrogenas 42.9 21 0.0007 22.7 2.9 27 37-64 4-30 (160)
274 1vd2_A Protein kinase C, IOTA 42.9 29 0.001 19.8 3.3 32 35-67 5-36 (89)
275 1ip9_A BEM1 protein; ubiquitin 42.8 27 0.00092 20.0 3.1 32 35-67 11-42 (85)
276 3u52_E Phenol hydroxylase comp 42.6 44 0.0015 20.3 4.1 48 46-93 37-107 (119)
277 3pvl_A Myosin VIIA isoform 1; 42.6 23 0.00078 27.3 3.6 34 34-67 261-294 (655)
278 1ffv_A CUTS, iron-sulfur prote 41.7 22 0.00076 22.5 2.9 22 44-65 10-31 (163)
279 3hui_A Ferredoxin; cytochrome 38.2 52 0.0018 19.7 4.1 27 37-63 22-48 (126)
280 4dxa_B KREV interaction trappe 37.8 38 0.0013 23.2 3.9 33 35-67 4-38 (322)
281 1xlq_A Putidaredoxin, PDX; [2F 37.3 53 0.0018 18.6 3.9 25 38-62 2-26 (106)
282 3onh_A Ubiquitin-activating en 36.9 26 0.00089 21.5 2.5 18 76-93 60-77 (127)
283 4gmv_A RAS-associated and plec 35.6 43 0.0015 23.1 3.8 30 38-67 33-62 (281)
284 1rm6_C 4-hydroxybenzoyl-COA re 34.9 30 0.001 21.7 2.7 23 44-66 9-31 (161)
285 1uwm_A Ferredoxin VI, FDVI; el 34.7 63 0.0022 18.2 4.0 26 38-63 2-27 (106)
286 1rws_A Hypothetical protein PF 33.7 9.8 0.00033 20.8 0.2 37 51-92 25-70 (77)
287 3chb_D Cholera toxin; toxin/re 33.4 31 0.0011 19.8 2.3 27 41-67 41-67 (104)
288 3hrs_A Metalloregulator SCAR; 32.8 47 0.0016 21.4 3.5 33 16-51 167-201 (214)
289 3hk0_A Growth factor receptor- 31.8 51 0.0018 22.4 3.6 30 38-67 10-39 (256)
290 1c1y_B Proto-onkogene serine/t 31.7 57 0.0019 18.2 3.2 29 39-67 4-32 (77)
291 1jq4_A Methane monooxygenase c 31.5 58 0.002 18.1 3.4 27 37-63 5-31 (98)
292 1frr_A Ferredoxin I; electron 30.7 64 0.0022 17.7 3.5 25 38-63 3-27 (95)
293 2k5i_A Iron transport protein; 30.1 49 0.0017 20.8 3.1 73 16-93 27-117 (162)
294 1wxm_A A-RAF proto-oncogene se 29.6 65 0.0022 18.4 3.2 30 38-67 9-38 (86)
295 2xsg_A Ccman5; hydrolase, mann 27.5 72 0.0025 25.3 4.2 75 16-95 675-752 (774)
296 1fm0_D Molybdopterin convertin 27.2 76 0.0026 16.8 4.2 41 48-94 18-76 (81)
297 1fx7_A Iron-dependent represso 26.4 25 0.00086 22.9 1.3 34 16-51 184-217 (230)
298 2y3a_A Phosphatidylinositol-4, 25.4 64 0.0022 26.6 3.6 32 36-67 51-82 (1092)
299 2q5w_D Molybdopterin convertin 25.2 72 0.0025 16.7 2.9 47 48-94 17-72 (77)
300 1awd_A Ferredoxin; electron tr 25.0 74 0.0025 17.5 3.0 25 38-63 2-26 (94)
301 2nnz_A Hypothetical protein; b 25.0 58 0.002 20.4 2.7 32 35-67 28-62 (153)
302 2wvx_A Mannosidase, putative a 24.7 54 0.0018 25.8 3.0 75 16-95 638-715 (744)
303 2ww2_A Mannosidase, alpha-1,2- 24.1 54 0.0019 25.8 2.9 75 16-95 640-717 (737)
304 1b9r_A Protein (terpredoxin); 23.9 60 0.002 18.3 2.5 25 38-62 2-26 (105)
305 2l05_A Serine/threonine-protei 23.8 1.1E+02 0.0036 17.8 3.5 31 37-67 18-48 (95)
306 3tca_A Amyloid beta A4 precurs 23.6 84 0.0029 20.7 3.6 31 37-67 35-65 (291)
307 2q2g_A HSP40 protein, heat sho 23.5 1.2E+02 0.004 19.1 4.1 33 23-55 91-128 (180)
308 2qjl_A URM1, ubiquitin-related 23.2 97 0.0033 17.3 3.3 48 47-94 20-94 (99)
309 4a6q_A Histone deacetylase com 23.1 77 0.0026 19.8 3.0 28 68-95 110-138 (143)
310 3agx_A DNAJ homolog subfamily 22.9 1.2E+02 0.0041 19.1 4.0 33 23-55 91-128 (181)
311 1c3g_A Heat shock protein 40; 21.0 1.2E+02 0.0042 18.8 3.8 33 23-55 85-122 (170)
312 3h43_A Proteasome-activating n 20.8 1.1E+02 0.0037 17.1 3.1 28 37-64 31-58 (85)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.97 E-value=1.3e-30 Score=169.70 Aligned_cols=97 Identities=27% Similarity=0.347 Sum_probs=94.1
Q ss_pred CCCCceEEE-e-cCccc-----cccccccCCCcceeeee-ecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-----
Q 042212 1 MPLEQQRLV-F-ADKSL-----LADYNIQKESTLHLVAR-LRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----- 67 (97)
Q Consensus 1 ip~~~q~L~-~-~~~~L-----l~~y~i~~~s~i~l~~~-~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----- 67 (97)
||+++|+|+ | +|++| |++|||.+|+++||+++ ++++|+|+||+.+|++++++|++++||+++|++|+
T Consensus 38 ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 117 (159)
T 3rt3_B 38 VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV 117 (159)
T ss_dssp CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTC
T ss_pred CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCC
Confidence 799999999 9 79999 99999999999999999 58999999999999999999999999999999998
Q ss_pred --------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 68 --------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 68 --------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|++|+|+.+|++|||++|+++|+++|+|
T Consensus 118 p~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 118 QDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999999999999999999999986
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.96 E-value=7.5e-30 Score=168.19 Aligned_cols=97 Identities=69% Similarity=0.933 Sum_probs=92.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------- 67 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------- 67 (97)
||+++|+|+|+|++| |++|||.+|+++||+++.+++|+++|++.+|+++++++++++||.+||++|+
T Consensus 56 ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 135 (172)
T 3u30_A 56 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 135 (172)
T ss_dssp CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred cChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCce
Confidence 799999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred -----CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 68 -----SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 68 -----~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|++|+|+.+|++|+|++|+++|+++|+|
T Consensus 136 ~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 136 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 170 (172)
T ss_dssp GCCEEETTEECCTTSBSGGGTCCTTCEEEECC---
T ss_pred eEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecC
Confidence 999999999999999999999999999986
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.95 E-value=4.3e-28 Score=155.74 Aligned_cols=97 Identities=69% Similarity=0.933 Sum_probs=94.4
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------- 67 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------- 67 (97)
||+++|+|+|+|+.| |++|||.+|+++|++.+.+++|+|+|++.+|+++.+++++++||++||++|+
T Consensus 36 ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 115 (152)
T 3b08_A 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 115 (152)
T ss_dssp CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChh
Confidence 699999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred -----CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 68 -----SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 68 -----~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+.|+|+.+|++|||++|+++++++|+|
T Consensus 116 ~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 116 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp GEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred hEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999999999999999999999986
No 4
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.83 E-value=5.7e-21 Score=113.21 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=59.4
Q ss_pred cccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCC
Q 042212 20 NIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQK 86 (97)
Q Consensus 20 ~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~ 86 (97)
|..++++++++++.+..|+|+||+.+|+++.++|++++||++||++|+ |+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 567899999999999999999999999999999999999999999999 99999999999999999 8
Q ss_pred CCEEEEEEe
Q 042212 87 ESTLHFVLR 95 (97)
Q Consensus 87 ~sti~l~~r 95 (97)
|+++|+++|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999986
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=108.05 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=61.0
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.++|+|+||+.+|+++.++|++++||+++|++|+ |+|+.|+|+.+|++|||++|+++++++|+|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3679999999999999999999999999999998 999999999999999999999999999986
No 6
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.78 E-value=2.6e-19 Score=107.59 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=57.3
Q ss_pred eeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 30 VARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 30 ~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
+-..+..|+|+||+++|++++++|+|++||.+||++|+ |+|++|+|+.||++|+|++|+|++|.
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 33445669999999999999999999999999999999 99999999999999999999999985
No 7
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.78 E-value=3.4e-19 Score=106.29 Aligned_cols=64 Identities=61% Similarity=0.808 Sum_probs=61.4
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
...|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|||++|++|++++|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 3569999999999999999999999999999998 999999999999999999999999999987
No 8
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.77 E-value=5.7e-19 Score=104.95 Aligned_cols=61 Identities=38% Similarity=0.507 Sum_probs=59.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|++++++|++++||++||++|+ |+|+.|+|+.+|++|+|++|+++++++|+|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 7999999999999999999999999999999 999999999999999999999999999986
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=1.2e-18 Score=102.82 Aligned_cols=64 Identities=39% Similarity=0.539 Sum_probs=61.3
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..+|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+|+++++|++++|+|
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 4569999999999999999999999999999998 999999999999999999999999999986
No 10
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=1.9e-18 Score=99.96 Aligned_cols=63 Identities=27% Similarity=0.447 Sum_probs=58.9
Q ss_pred CCeeeEEECCCCCEE-EEe-ecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTI-TLE-VESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~-~l~-v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
++|+|+||+.+|+++ +++ +++++||++||++|+ |+|++|+|+.+|++|||++|+++++++|+.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 579999999999985 999 999999999999999 999999999999999999999999999863
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.75 E-value=3.3e-18 Score=97.96 Aligned_cols=61 Identities=38% Similarity=0.507 Sum_probs=59.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|+++.+++++++||++||++|+ |+|+.|+|+.+|++|||++|+++++++|++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 8999999999999999999999999999998 999999999999999999999999999975
No 12
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=2.6e-18 Score=100.59 Aligned_cols=63 Identities=44% Similarity=0.623 Sum_probs=59.4
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+||+.+|+++.+++++++||.+||++|+ |+|+.|+|+.+|++|+|+++++|++++|++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 369999999999999999999999999999998 999999999999999999999999999985
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.3e-18 Score=99.19 Aligned_cols=63 Identities=59% Similarity=0.729 Sum_probs=60.0
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.+|+|+|++.+|+++.+++++++||.+||++|+ |+|+.|+|+.+|++|+|++++++++++|++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 469999999999999999999999999999999 999999999999999999999999999975
No 14
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.74 E-value=3.9e-18 Score=101.28 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=59.6
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+..|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+| +|++||+++|++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 3569999999999999999999999999999999 99999999999999999 899999999863
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.6e-18 Score=103.25 Aligned_cols=64 Identities=66% Similarity=0.800 Sum_probs=60.2
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
...|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+|++|++|++++|+|
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3569999999999999999999999999999998 999999999999999999999999999986
No 16
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=5.8e-18 Score=101.52 Aligned_cols=62 Identities=65% Similarity=0.813 Sum_probs=59.2
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+|++|++|++++|++
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 48999999999999999999999999999998 999999999999999999999999999975
No 17
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=4.3e-18 Score=104.55 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=58.9
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------------------CCCeeCC-CCCcccccccC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------------------SPAGNFE-DGWTQADYNIQ 85 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------------------~~gk~L~-d~~tL~~y~I~ 85 (97)
..|+|+|++++|++++++|++++||++||++|+ |+|++|. |+.||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 459999999999999999999999999999987 7899996 67999999999
Q ss_pred CCCEEEEEEeeC
Q 042212 86 KESTLHFVLRLS 97 (97)
Q Consensus 86 ~~sti~l~~rl~ 97 (97)
+|++|||++++|
T Consensus 86 ~g~~l~lv~~lr 97 (105)
T 1v2y_A 86 NRDEVSFIKKLG 97 (105)
T ss_dssp SSEEEEEEECSC
T ss_pred CCCEEEEEehhc
Confidence 999999999986
No 18
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=103.74 Aligned_cols=80 Identities=51% Similarity=0.598 Sum_probs=72.3
Q ss_pred cccccCCCcceeeeeec--------CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCC
Q 042212 18 DYNIQKESTLHLVARLR--------GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDG 76 (97)
Q Consensus 18 ~y~i~~~s~i~l~~~~~--------~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~ 76 (97)
.-++.+|.++++..... ..|+|+||+.+|+++.++|++++||++||++|+ |+|+.|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~ 88 (111)
T 2ojr_A 9 NDGWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 88 (111)
T ss_dssp CSSSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSS
T ss_pred CCceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCC
Confidence 34677888888877632 469999999999999999999999999999998 999999999
Q ss_pred CcccccccCCCCEEEEEEeeC
Q 042212 77 WTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 77 ~tL~~y~I~~~sti~l~~rl~ 97 (97)
.+|++|+|++|++|++++|+|
T Consensus 89 ~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 89 RTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp CBTTTTTCCTTCEEEEEECCC
T ss_pred CcHHHcCCCCCCEEEEEEeCC
Confidence 999999999999999999986
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.73 E-value=4e-18 Score=98.94 Aligned_cols=62 Identities=10% Similarity=0.174 Sum_probs=59.8
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.|+|+|++.+|+++.++|++++||+++|++|+ |+|++|+|+.||++|+|++|++|++++|++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 59999999999999999999999999999998 999999999999999999999999999875
No 20
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=101.06 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=58.9
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.+|+|+||+.+|+++.++|++++||++||++|+ |+|++|+|+.+|++|||++|++|+++++++
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 569999999999999999999999999999998 999999999999999999999999999864
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=4.6e-18 Score=100.23 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=61.0
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
++.|+|+||+.+|+++.+++++++||.+||++|+ |+|+.|+|+.+|++|+|+++++|++++|++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEecc
Confidence 4679999999999999999999999999999998 999999999999999999999999999975
No 22
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=7.1e-18 Score=100.16 Aligned_cols=63 Identities=54% Similarity=0.736 Sum_probs=57.1
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.+|+|+|++.+|+++.+++++++||++||++|+ |+|+.|+|+.+|++|||++|++|++++|++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 469999999999999999999999999999998 999999999999999999999999999875
No 23
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.57 E-value=3e-19 Score=102.88 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=59.1
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|+++.+++++++||++||++|+ |+|+.|+|+.+|++|||++|+++++++|+|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 8999999999999999999999999999999 999999999999999999999999999986
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=1e-17 Score=95.89 Aligned_cols=61 Identities=64% Similarity=0.829 Sum_probs=58.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|+++.+++++++||++||++|+ |+|+.|+|+.+|++|||++|+++++++|++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 8999999999999999999999999999998 999999999999999999999999999975
No 25
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=4.7e-18 Score=100.39 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCee-CCCCCcccccccCCCCEEEEEEee
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGN-FEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~-L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
.-|+|+|++.+|++++++|++++||++||++|+ |+|++ |+|+.+|++|||++|++|++++|.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 459999999999999999999999999999999 99999 999999999999999999999874
No 26
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.72 E-value=6.2e-18 Score=102.18 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=61.0
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+..|+|+||+.+|+++.++|++++||.+||++|+ |+|++|+|+.||++|+|+++++|++++|+|
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 3459999999999999999999999999999998 999999999999999999999999999975
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-18 Score=97.81 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=60.5
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+..|+|+|++.+|+++.+++++++||++||++|+ |+|+.|+|+.+|++|||++|+++++++|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3569999999999999999999999999999998 999999999999999999999999999875
No 28
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=7.3e-18 Score=102.67 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=56.2
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|+||++.|++++++|+|++||.+||++|+ |+|++|+|+.||++|||+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 9999999999999999999999999999999 999999999999999999999999863
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=98.10 Aligned_cols=63 Identities=25% Similarity=0.396 Sum_probs=59.6
Q ss_pred CCeeeEEECCCC-CEEEE-eecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTG-KTITL-EVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+||+.+| +++.+ +|++++||.+||++|+ |+|+.|+|+.+|++|+|+++++|++++|++
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 569999999999 79999 5999999999999998 999999999999999999999999999875
No 30
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.70 E-value=3.6e-17 Score=101.04 Aligned_cols=63 Identities=63% Similarity=0.779 Sum_probs=60.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+|+++++|++++|+|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 359999999999999999999999999999998 999999999999999999999999999986
No 31
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=2.1e-17 Score=99.42 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=60.1
Q ss_pred ecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCC-CcccccccCCCCEEEEEEeeC
Q 042212 33 LRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDG-WTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 33 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~-~tL~~y~I~~~sti~l~~rl~ 97 (97)
...+|+|+||+..| +++++|++++||++||++|+ |+|++|+|+ .+|++|||++|++|++++|++
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 35679999999988 89999999999999999999 999999999 999999999999999999975
No 32
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5e-18 Score=103.43 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=55.4
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCccccc
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADY 82 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y 82 (97)
.+||.| ++|.++.++....|.|+|++ +|+++.++|++++||++||++|+ |+|+.|+|+.+|++|
T Consensus 10 ~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 10 MSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86 (101)
T ss_dssp ---------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTT
T ss_pred ccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHC
Confidence 578888 45667777766778899998 89999999999999999999998 999999999999999
Q ss_pred ccCCCCEEEEEEe
Q 042212 83 NIQKESTLHFVLR 95 (97)
Q Consensus 83 ~I~~~sti~l~~r 95 (97)
||++|++|+++.+
T Consensus 87 gI~~g~tI~lv~~ 99 (101)
T 3m63_B 87 HIQDGHSVHLVKS 99 (101)
T ss_dssp TCCTTEEEEECCC
T ss_pred CCCCCCEEEEEeC
Confidence 9999999999865
No 33
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=99.21 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=57.2
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
+..|+|+||+ |+++.++|++++||++||++|+ |+|++|+|+.+|++|+|+++++|++++|+|
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3569999998 8999999999999999999998 999999999999999999999999999986
No 34
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.1e-17 Score=100.57 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=56.6
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|||++|++|+++++
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999998 9999999999999999999999999986
No 35
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.69 E-value=7e-17 Score=94.61 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=58.0
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
+..|+|+||+.+|+++.++|++++||++||++|+ |+|+.|+|+.+|++|||++|++++++.+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 4679999999999999999999999999999875 89999999999999999999999999863
No 36
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-17 Score=99.55 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=56.2
Q ss_pred eeeEEECCCCCEEEEeec--CCCcHHHhhccc-c-------------CCCeeCCCCCccccccc-CCCCEEEEEEee
Q 042212 37 MQIFVKTSTGKTITLEVE--SSDMIDNASRGS-S-------------SPAGNFEDGWTQADYNI-QKESTLHFVLRL 96 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~--~~~tV~~lK~~I-~-------------~~gk~L~d~~tL~~y~I-~~~sti~l~~rl 96 (97)
|+|+||+++|++++++|+ +++||.++|++| + |+|++|+|+.+|++|+| ++|++++++++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999999866 999999999999 5 99999999999999999 799999998863
No 37
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.68 E-value=6.4e-17 Score=106.54 Aligned_cols=61 Identities=69% Similarity=0.855 Sum_probs=59.4
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|+++.++|++++||.+||++|+ |+|++|+|+.+|++|+|++|+++|+++|+|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence 8999999999999999999999999999998 999999999999999999999999999975
No 38
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=8.3e-17 Score=97.05 Aligned_cols=61 Identities=66% Similarity=0.832 Sum_probs=58.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+||+.+|+++.++|++++||++||++|+ |+|+.|+|+.+|++|||++|++|+++++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 8999999999999999999999999999998 999999999999999999999999998864
No 39
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=8e-17 Score=101.62 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=61.2
Q ss_pred eeeeeecCCeeeEEECCCCCEE-EEeecCCCcHHHhhccc-----c---------------CCCeeCCCCCcccccccCC
Q 042212 28 HLVARLRGRMQIFVKTSTGKTI-TLEVESSDMIDNASRGS-----S---------------SPAGNFEDGWTQADYNIQK 86 (97)
Q Consensus 28 ~l~~~~~~~m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I-----~---------------~~gk~L~d~~tL~~y~I~~ 86 (97)
||.......|+|+||+.+|+.+ +++++|++||++||++| + |+||+|+|+.||++|+|++
T Consensus 8 ~~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~ 87 (126)
T 1se9_A 8 HLEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV 87 (126)
T ss_dssp --CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred hhhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence 3333344679999999999988 79999999999999999 2 9999999999999999999
Q ss_pred C------CEEEEEEeeC
Q 042212 87 E------STLHFVLRLS 97 (97)
Q Consensus 87 ~------sti~l~~rl~ 97 (97)
+ +|+||++|++
T Consensus 88 ~~~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 88 SNLAGAVTTMHVIIQAP 104 (126)
T ss_dssp TSCTTCCEEEEEEECCC
T ss_pred CCccCCcEEEEEEeccC
Confidence 8 7899999975
No 40
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.68 E-value=6.3e-17 Score=98.25 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=56.6
Q ss_pred cCCeeeEEECCCCCEEEE--eecCCCcHHHhhccc-c-------------CCCeeCCCCCccccccc-CCCCEEEEEEe
Q 042212 34 RGRMQIFVKTSTGKTITL--EVESSDMIDNASRGS-S-------------SPAGNFEDGWTQADYNI-QKESTLHFVLR 95 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l--~v~~~~tV~~lK~~I-~-------------~~gk~L~d~~tL~~y~I-~~~sti~l~~r 95 (97)
.++|+|+||+++|+++++ +|++++||.+||++| + |+|++|+|+.+|++|+| ++|++|+++++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 467999999999998777 566999999999999 4 99999999999999999 99999999986
No 41
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=99.79 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=58.2
Q ss_pred ecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------------CCCeeCCCCCcccccccCCC--CE
Q 042212 33 LRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------------SPAGNFEDGWTQADYNIQKE--ST 89 (97)
Q Consensus 33 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------------~~gk~L~d~~tL~~y~I~~~--st 89 (97)
....|+|+||+++|++++++|++++||++||++|+ |+|++|+|+.||++|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 34569999999999999999999999999999875 78999999999999999766 67
Q ss_pred EEEEEeeC
Q 042212 90 LHFVLRLS 97 (97)
Q Consensus 90 i~l~~rl~ 97 (97)
+||++|+.
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 99998863
No 42
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=9.5e-17 Score=99.00 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=61.4
Q ss_pred ecCCeeeEEECC---CCCEEEEeecC-CCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 33 LRGRMQIFVKTS---TGKTITLEVES-SDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 33 ~~~~m~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
.++.|+|+|+++ +|+++.++|++ ++||.+||++|+ |+|+.|+|+.+|++|+|++|++|++++|
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 457899999998 89999999998 999999999999 9999999999999999999999999999
Q ss_pred eC
Q 042212 96 LS 97 (97)
Q Consensus 96 l~ 97 (97)
+|
T Consensus 104 ~~ 105 (111)
T 1we6_A 104 ER 105 (111)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 43
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-16 Score=98.50 Aligned_cols=64 Identities=63% Similarity=0.818 Sum_probs=61.2
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.++++|+|++++|+++.++|++++||++||++|+ |+|++|+|+.+|++|+|++|++|++++|++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 4789999999999999999999999999999998 999999999999999999999999999875
No 44
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=1.9e-16 Score=106.04 Aligned_cols=62 Identities=63% Similarity=0.771 Sum_probs=60.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.|+|+||+++|++++++|++++||.+||++|+ |+|++|+|+.+|++|+|+++++|+|++|++
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 49999999999999999999999999999999 999999999999999999999999999975
No 45
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.65 E-value=2.7e-16 Score=90.35 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=55.8
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+|+|++ +|+++.+++++++||.+||++|+ |+|+.|+|+.+|++|||++|++++++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999999 89999999999999999999998 9999999999999999999999999875
No 46
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.1e-16 Score=95.70 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=58.5
Q ss_pred CCeeeEEECCCCC--EEEEeecCCCcHHHhhcccc---------------CCCeeCCCCCccccc--ccCCCCEEEEEEe
Q 042212 35 GRMQIFVKTSTGK--TITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADY--NIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y--~I~~~sti~l~~r 95 (97)
..|+|+||+.+|+ ++.+++++++||.+||++|+ |+|++|+|+.+|++| +|+++++|||+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 5699999999998 77888889999999999997 899999999999999 9999999999998
Q ss_pred eC
Q 042212 96 LS 97 (97)
Q Consensus 96 l~ 97 (97)
+|
T Consensus 86 ~~ 87 (93)
T 1wgd_A 86 VK 87 (93)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 47
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=95.19 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=59.4
Q ss_pred eecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 32 RLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 32 ~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.....|+|+|++. |+++.++|++++||++||++|+ |+|+.|+|+.+|++|||++|++|+++.+++
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 3456799999998 8999999999999999999998 999999999999999999999999998864
No 48
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.4e-16 Score=97.53 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=59.5
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
...|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|||++|++||++++.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3569999999999999999999999999999998 99999999999999999999999999874
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.8e-16 Score=96.34 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=59.3
Q ss_pred ecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 33 LRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 33 ~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.+..|+|+|++.+|+ +.++|++++||.+||++|+ |+|+.|+|+.+|++|||++|++|++++|++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 346699999999886 7999999999999999998 999999999999999999999999999874
No 50
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=3.2e-16 Score=94.17 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=56.7
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
|+|+||+.+|+++.++|++++||++||++|+ |+|+.|+|+.+|++|||++|++|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 8999999999999999999999999999886 89999999999999999999999998863
No 51
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.64 E-value=1.4e-17 Score=105.17 Aligned_cols=61 Identities=69% Similarity=0.855 Sum_probs=0.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+|++.+|+++.++|++++||++||++|+ |+|++|+|+.+|++|||++|++|++++|++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 7999999999999999999999999999999 999999999999999999999999999874
No 52
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.8e-16 Score=93.65 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=58.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------CCCeeCCCC-CcccccccCCCCEEEEEEee
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------SPAGNFEDG-WTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------~~gk~L~d~-~tL~~y~I~~~sti~l~~rl 96 (97)
..|+|+||+.+|+.+.++|++++||.+||++|+ |+|+.|+|+ .+|++|||++|++||++++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhCcCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 569999999999999999999999999999987 999999999 99999999999999999874
No 53
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=102.43 Aligned_cols=64 Identities=63% Similarity=0.793 Sum_probs=60.2
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
...|+|+||+.+|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|||+++++++++++++
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 3569999999999999999999999999999999 999999999999999999999999998864
No 54
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=98.35 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=57.9
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------------CCCeeCCCCCcccccccCCCC--EE
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------------SPAGNFEDGWTQADYNIQKES--TL 90 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------------~~gk~L~d~~tL~~y~I~~~s--ti 90 (97)
...|.|+||+++|++++++|++++||++||++|+ |+||+|+|+.||++|+|++++ ++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 3459999999999999999999999999999876 799999999999999999776 78
Q ss_pred EEEEeeC
Q 042212 91 HFVLRLS 97 (97)
Q Consensus 91 ~l~~rl~ 97 (97)
|+++|++
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9998864
No 55
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.4e-16 Score=95.59 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=58.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+|++. |+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+|+++++||+++|++
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 4599999998 9999999999999999999998 999999999999999999999999998864
No 56
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=96.16 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=55.0
Q ss_pred cCCeeeEEECCCCC--EEEEeecCCCcHHHhhcccc---------------CCCeeCCCCCccccc--ccCCCCEEEEE
Q 042212 34 RGRMQIFVKTSTGK--TITLEVESSDMIDNASRGSS---------------SPAGNFEDGWTQADY--NIQKESTLHFV 93 (97)
Q Consensus 34 ~~~m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~d~~tL~~y--~I~~~sti~l~ 93 (97)
.++|+|+||+++|+ +++++|++++||.+||++|+ |+|++|+|+.+|++| +|+++++|||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 35699999999998 67999999999999999998 999999999999999 99999999984
No 57
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=3.1e-16 Score=95.44 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=52.3
Q ss_pred eeEEECCC----CCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 38 QIFVKTST----GKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 38 ~i~vk~~~----g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
.|.|+..+ |++++++|++++||++||++|+ |+||+|+|+.||++|+|++|++| +++++|
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEEC
Confidence 45555555 7899999999999999999999 99999999999999999999999 777765
No 58
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.62 E-value=3.5e-17 Score=106.32 Aligned_cols=61 Identities=69% Similarity=0.855 Sum_probs=0.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+|++++|+++.++|++++||.+||++|+ |+|++|+|+.+|++|+|++|++|++++|++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 8999999999999999999999999999999 999999999999999999999999999975
No 59
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.61 E-value=2.4e-16 Score=98.42 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=53.6
Q ss_pred eeeEEECCCCC-EEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccC-------CCCEEEEEEe
Q 042212 37 MQIFVKTSTGK-TITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQ-------KESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~-------~~sti~l~~r 95 (97)
|++|++...|+ ++.++|++++||.+||++|+ |+|++|+|++||++|||+ +++|+||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 56667666676 58999999999999999999 999999999999999999 7999999998
No 60
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1e-15 Score=96.47 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=57.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+||+. |+++.++|++++||.+||++|+ |+|+.|+|+.+|++|||++|++|+++++++
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 5699999999 9999999999999999999998 999999999999999999999999998864
No 61
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.61 E-value=4.4e-16 Score=97.13 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=55.4
Q ss_pred eeeEEECCCCC-EEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCC-------CCEEEEEEe
Q 042212 37 MQIFVKTSTGK-TITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQK-------ESTLHFVLR 95 (97)
Q Consensus 37 m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~-------~sti~l~~r 95 (97)
|.+|++...++ ++.+++++++||.+||++|+ |+|++|+|++||++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 66788777776 78889999999999999999 9999999999999999999 999999998
Q ss_pred e
Q 042212 96 L 96 (97)
Q Consensus 96 l 96 (97)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 62
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=9e-16 Score=93.83 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=57.8
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+||..+|+ +.++|++++||.+||++|+ |+|+.|+|+.+|++|+|+++++|++++|++
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 4599999999886 7999999999999999998 999999999999999999999999999864
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.58 E-value=2.2e-15 Score=97.51 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=57.2
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------C-CCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------S-PAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~-~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
.|+|+||+.+|++++++|++++||+++|++|+ | +|++|+|+.+|++|||++|++++++++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 38999999999999999999999999999999 5 899999999999999999999999987
No 64
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.58 E-value=1.5e-15 Score=94.11 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=57.8
Q ss_pred cCCeeeEEECC----------CCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEE
Q 042212 34 RGRMQIFVKTS----------TGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTL 90 (97)
Q Consensus 34 ~~~m~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti 90 (97)
+++++|.|+.+ +|+++.++|++++||.+||++|+ |+|+.|+|+.+|++|+|++|++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 45677777765 47899999999999999999998 99999999999999999999999
Q ss_pred EEEEeeC
Q 042212 91 HFVLRLS 97 (97)
Q Consensus 91 ~l~~rl~ 97 (97)
|+++|+|
T Consensus 103 ~lv~rl~ 109 (115)
T 1we7_A 103 HLALKER 109 (115)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 9999986
No 65
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.4e-15 Score=92.44 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred CCeeeEEECCCC----CEEEEeecCCCcHHHhhcccc-------------CCCeeCCCC-CcccccccCCCCEEEEEEee
Q 042212 35 GRMQIFVKTSTG----KTITLEVESSDMIDNASRGSS-------------SPAGNFEDG-WTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 35 ~~m~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~-~tL~~y~I~~~sti~l~~rl 96 (97)
..|+|+|++.++ +++.++|++++||++||++|+ |+|++|+|+ .+|++|+|++|++|+++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999999754 799999999999999999999 999999988 79999999999999999876
Q ss_pred C
Q 042212 97 S 97 (97)
Q Consensus 97 ~ 97 (97)
|
T Consensus 86 ~ 86 (102)
T 1v5o_A 86 N 86 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.57 E-value=4.5e-15 Score=105.60 Aligned_cols=64 Identities=64% Similarity=0.825 Sum_probs=59.1
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
++.|+|+||+++|+++.++|++++||++||++|+ |+|++|+|+.+|++|+|+++++|++++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 4679999999999999999999999999999998 999999999999999999999999999987
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=7.7e-15 Score=93.64 Aligned_cols=60 Identities=67% Similarity=0.847 Sum_probs=57.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
|+|+|++.+|+++++++++++||++||++|+ |+|+.|+|+.+|++|||++|++++++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 8999999999999999999999999999998 99999999999999999999999999874
No 68
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.53 E-value=1.6e-14 Score=88.48 Aligned_cols=60 Identities=17% Similarity=0.027 Sum_probs=55.2
Q ss_pred CeeeEEECCCC--CEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCccccccc-CCCCEEEEEEe
Q 042212 36 RMQIFVKTSTG--KTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNI-QKESTLHFVLR 95 (97)
Q Consensus 36 ~m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I-~~~sti~l~~r 95 (97)
.|+++|++..+ .+++++|+|++||.+||++|+ |+|+.++|++||++||| ++|+++||++.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 39999999875 689999999999999999999 89999999999999999 69999999874
No 69
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=85.41 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred CeeeEEECCCCCEE--EE-eecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 36 RMQIFVKTSTGKTI--TL-EVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 36 ~m~i~vk~~~g~~~--~l-~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
.|+|+|+++.|+.+ ++ +|+|++||++||++|+ ++|++|+|+.||++|||.++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 39999999998775 58 9999999999999998 4599999999999999999999876
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.6e-14 Score=87.77 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCeeeEEE-CCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 35 GRMQIFVK-TSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk-~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
..+.|.|+ ...|+.++++++++.||++||+.++ |+||.|+|+.||++|||++|.||||+.+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 34778887 6778999999999999999999999 9999999999999999999999999986
No 71
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.48 E-value=3e-15 Score=100.08 Aligned_cols=56 Identities=21% Similarity=0.135 Sum_probs=0.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
|+|+|++++|++++++|++++||.+||++|+ |+|++|+|+.||+ +++||||++|+|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecC
Confidence 8999999999999999999999999999999 9999999999999 999999999985
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=5.6e-14 Score=82.84 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=51.9
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+++++.+|+++.+++++++||++||++|+ |+|++|+|+.+|++|||++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 34556689999999999999999999998 9999999999999999999999999864
No 73
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.45 E-value=6.4e-14 Score=101.79 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEE-EEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTL-HFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti-~l~~rl~ 97 (97)
..|+|+||+++|+++.++|++++||.+||++|+ |+||+|+|+.+|++|||++|++| +++.|++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 469999999999999999999999999999887 99999999999999999999998 7776653
No 74
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=8.1e-16 Score=95.42 Aligned_cols=61 Identities=48% Similarity=0.617 Sum_probs=56.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEE---CCCCCEEEEeecCCCcHHH
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVK---TSTGKTITLEVESSDMIDN 61 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk---~~~g~~~~l~v~~~~tV~~ 61 (97)
||+++|+|+|+|++| |++|||.+|++|+|+++++++++++++ +.+|++++++|++++||.+
T Consensus 45 ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 45 IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceeeccccccccCceEEEEeccccccCC
Confidence 799999999999999 999999999999999999999999998 4578999999999999864
No 75
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=1.1e-13 Score=84.74 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCeeeEEECCCC---CEEEEe--------ecCC-CcHHHhhcccc----------------CCCeeCCCCCcccccccCC
Q 042212 35 GRMQIFVKTSTG---KTITLE--------VESS-DMIDNASRGSS----------------SPAGNFEDGWTQADYNIQK 86 (97)
Q Consensus 35 ~~m~i~vk~~~g---~~~~l~--------v~~~-~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~ 86 (97)
..|+|+||+.+| +++.++ |+++ +||.+||++|+ |+|+.|+|+.+|++|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 469999999998 899999 4454 99999998774 7899999999999999999
Q ss_pred CCEEEEEEee
Q 042212 87 ESTLHFVLRL 96 (97)
Q Consensus 87 ~sti~l~~rl 96 (97)
|++||++++.
T Consensus 91 g~~i~lv~~~ 100 (107)
T 1x1m_A 91 GSTVHVLRKS 100 (107)
T ss_dssp TCEEEEEESS
T ss_pred CCEEEEEeCC
Confidence 9999999874
No 76
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.43 E-value=7.6e-14 Score=83.01 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCeeeEEECCCCCEEEE-eecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 35 GRMQIFVKTSTGKTITL-EVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l-~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
..|+|+||. .|+++.+ ++++++||.+||++|+ |+|++|+|+.+|++|+|++|++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 459999996 7899999 9999999999999999 5799999999999999999999999854
No 77
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=9.3e-14 Score=83.70 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCeeeEEECCCCCEE-EEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 35 GRMQIFVKTSTGKTI-TLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
..|+|+||. .|+++ .+++++++||.+||++|+ |+|++|+|+ +|++|||+++++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 359999996 68999 699999999999999999 999999999 999999999999998754
No 78
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=84.16 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=54.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------C--CCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------S--PAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~--~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+|+++++...|+++++++++++||++||++|+ | +|+ |+|+.+|++|+|++|+++|++++
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 58999988999999999999999999999998 3 455 99999999999999999999875
No 79
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=3e-13 Score=80.45 Aligned_cols=60 Identities=10% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCeeeEEECCCCCEEEEeecCC-----CcHHHhhcccc-------------CCCeeCCC-CCcccccccCCCCEEEEEEe
Q 042212 35 GRMQIFVKTSTGKTITLEVESS-----DMIDNASRGSS-------------SPAGNFED-GWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~I~-------------~~gk~L~d-~~tL~~y~I~~~sti~l~~r 95 (97)
..|+|+|+. .|+++.++++++ +||.+||++|+ |+|+.|+| +.+|++|+|++|++|+++.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 469999999 588999999995 99999999998 99999998 66899999999999999865
No 80
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=3.1e-13 Score=81.18 Aligned_cols=59 Identities=7% Similarity=-0.069 Sum_probs=52.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
..|+|+|+. .|+++.+++++++||.+||++|+ |+|++|+ +.+|++|+|+++++|+|+.+
T Consensus 16 ~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 358999984 68999999999999999999999 9999994 45999999999999999753
No 81
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.35 E-value=9.4e-13 Score=77.94 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=47.0
Q ss_pred CCCCCEEEEeecCCCcHHHhhcccc--------------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 43 TSTGKTITLEVESSDMIDNASRGSS--------------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 43 ~~~g~~~~l~v~~~~tV~~lK~~I~--------------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
....+.+...+++++||++||++|+ |.|+.|+|+++|++|||++|++||++-+
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 3455678899999999999999999 3689999999999999999999999853
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=1e-12 Score=80.45 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=51.8
Q ss_pred CeeeEEECCCCCEEEEeec-CCCcHHHhhcccc-------------CCCe-----------e----CCCCCcccccccCC
Q 042212 36 RMQIFVKTSTGKTITLEVE-SSDMIDNASRGSS-------------SPAG-----------N----FEDGWTQADYNIQK 86 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~-------------~~gk-----------~----L~d~~tL~~y~I~~ 86 (97)
.|.|+||+.+|+. .++|+ +++||.+||++|+ |+|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4999999999966 79999 9999999999999 6666 4 58999999999999
Q ss_pred CCEEEEEE
Q 042212 87 ESTLHFVL 94 (97)
Q Consensus 87 ~sti~l~~ 94 (97)
|++|||..
T Consensus 86 G~~L~l~~ 93 (107)
T 1wf9_A 86 GSMVYLAY 93 (107)
T ss_dssp TCEEECCC
T ss_pred CCEEEEEe
Confidence 99999864
No 83
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.33 E-value=1.3e-12 Score=78.67 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=51.2
Q ss_pred cCCeeeEEECCCCC--EEEEeecCCCcHHHhhcccc-------------CC--Ce---eC-CCCCcccccccCCCCEEEE
Q 042212 34 RGRMQIFVKTSTGK--TITLEVESSDMIDNASRGSS-------------SP--AG---NF-EDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 34 ~~~m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~-------------~~--gk---~L-~d~~tL~~y~I~~~sti~l 92 (97)
.+.+.|+|+...++ ++++++++++||++||++|+ |+ |+ .| +|+++|++|||++|++|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 34578888876654 88999999999999999999 55 55 45 8999999999999999998
Q ss_pred E
Q 042212 93 V 93 (97)
Q Consensus 93 ~ 93 (97)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=2.6e-12 Score=77.22 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=59.4
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+|++.+|+.+.+.|+++++++.|++.++ |.|+.|+++.|+++|++++|++|+++++++
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 459999999999999999999999999999988 999999999999999999999999998764
No 85
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.21 E-value=8e-12 Score=74.96 Aligned_cols=52 Identities=56% Similarity=0.752 Sum_probs=35.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEe
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLE 52 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~ 52 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+.+..++.+++.++.+|+.-.++
T Consensus 36 i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSVDKLAAALE 92 (98)
T ss_dssp CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----------------
T ss_pred cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccCCCchhhhh
Confidence 699999999999999 9999999999999999999999999999998765443
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.20 E-value=1.1e-11 Score=72.96 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=49.2
Q ss_pred eeeEEECCCCCEEEEe-ecCCCcHHHhhcccc---------------CCCeeCC---CCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLE-VESSDMIDNASRGSS---------------SPAGNFE---DGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~---------------~~gk~L~---d~~tL~~y~I~~~sti~l~ 93 (97)
|+|+||+.+|+. .++ +++++||.+||++|+ |.+++|+ |+.+|++|||.+|++|++.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 789999999965 477 999999999999999 4468884 6889999999999999875
No 87
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.19 E-value=1.1e-11 Score=74.79 Aligned_cols=60 Identities=5% Similarity=-0.001 Sum_probs=49.6
Q ss_pred CCeeeEEECCCC--CEEEEeecCCCcHHHhhcccc-------------CCC---ee----CCCCCcccccccCCCCEEEE
Q 042212 35 GRMQIFVKTSTG--KTITLEVESSDMIDNASRGSS-------------SPA---GN----FEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 35 ~~m~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~-------------~~g---k~----L~d~~tL~~y~I~~~sti~l 92 (97)
+.+.++|..... +.+++++++++||++||++|+ |+| +. ++|+++|++|+|++|++|++
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 346677766444 578999999999999999999 666 43 48999999999999999998
Q ss_pred EE
Q 042212 93 VL 94 (97)
Q Consensus 93 ~~ 94 (97)
+=
T Consensus 93 vd 94 (97)
T 2kj6_A 93 ID 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=3.8e-11 Score=71.69 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=59.1
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+|++.+|+.+.+.|+++++++.|++..+ |.|+.|.++.|.++|++++|++|+++++++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 458999999999999999999999999999888 999999999999999999999999998764
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.16 E-value=3.6e-11 Score=71.95 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=48.0
Q ss_pred eeeEEECCCCC-EEEEeecCCCcHHHhhcccc-------------CCC---ee----CCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGK-TITLEVESSDMIDNASRGSS-------------SPA---GN----FEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~-------------~~g---k~----L~d~~tL~~y~I~~~sti~l~ 93 (97)
+.++|+..... .+++++++++||++||++|+ |+| +. ++|+++|++|||++|++||++
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 66777765442 68999999999999999999 554 54 589999999999999999986
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.14 E-value=9.9e-11 Score=66.84 Aligned_cols=57 Identities=11% Similarity=0.217 Sum_probs=54.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|+|++.+|+.+.+.|+++++++.|++..+ |.|+.|.++.|.++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999888 99999999999999999999999986
No 91
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=69.35 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=33.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|++| |++|||++|++|||+++++|
T Consensus 40 ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 40 VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999 99999999999999999764
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.13 E-value=1.3e-10 Score=69.51 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|.|+|++.+|+.+.+.|++++++..|+...+ |.|+.|.++.|.++|++++|++|+++++++
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 459999999999999999999999999999888 999999999999999999999999998764
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=2e-10 Score=70.15 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=59.0
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+|++.+|+.+.+.|++++++..|+...+ |.|+.|.++.|.++|++++|++|+++++++
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 469999999999999999999999999999888 999999999999999999999999988764
No 94
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.07 E-value=1.3e-10 Score=72.53 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=49.7
Q ss_pred CCeeeEEECCCCC-EEEEeecCCCcHHHhhcccc-------------CCC---e---e-CCCCCcccccccCCCCEEEEE
Q 042212 35 GRMQIFVKTSTGK-TITLEVESSDMIDNASRGSS-------------SPA---G---N-FEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 35 ~~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~-------------~~g---k---~-L~d~~tL~~y~I~~~sti~l~ 93 (97)
+.+.|+|+...+. .+++++++++||++||++|+ |.| + + ++|+++|++|||++|++||++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 3467778775443 68899999999999999999 554 4 3 489999999999999999997
Q ss_pred E
Q 042212 94 L 94 (97)
Q Consensus 94 ~ 94 (97)
.
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 4
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.06 E-value=1.9e-10 Score=82.25 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
..|.|.||. +|+++++++++++||++||++|+ |+|++|+|+.+|++|||++|++|+|+-
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 347888986 79999999999999999999998 479999999999999999999999974
No 96
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.05 E-value=1.8e-10 Score=75.58 Aligned_cols=61 Identities=48% Similarity=0.648 Sum_probs=45.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEECC-CC--CEEEEeecCCCcHHH
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVKTS-TG--KTITLEVESSDMIDN 61 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk~~-~g--~~~~l~v~~~~tV~~ 61 (97)
||+++|||+|+|++| |++|||++|++|||+++++++++-.|+.. .| .+-.+.++++.++.+
T Consensus 36 ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~vkfs~~Gd~g~~~i~l~~~~~~~~ 104 (169)
T 3l0w_B 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEH 104 (169)
T ss_dssp CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CCEEEEEECSSCEEEEEECCBCCSSC
T ss_pred cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccccccccccccCcccceeEEEecCCCCCC
Confidence 799999999999999 99999999999999999988766666543 22 244566666655543
No 97
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.05 E-value=3.2e-10 Score=69.46 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=57.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
..|+|+|++ +|+.+.+.|++++++..|+...+ |.|+.|.++.|.++|++++|++|+++++++
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 449999999 99999999999999999999888 999999999999999999999999998764
No 98
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.04 E-value=1e-10 Score=72.84 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCceEEEecCccc-----cccccccC-------CCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQK-------ESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~-------~s~i~l~~~~~~ 35 (97)
||+++|||+|+|++| |++|||++ +++|||++|.++
T Consensus 37 iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~ 83 (118)
T 4ajy_B 37 RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECCSS
T ss_pred CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEecCC
Confidence 799999999999999 99999999 999999999754
No 99
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.04 E-value=9.6e-11 Score=69.08 Aligned_cols=37 Identities=49% Similarity=0.746 Sum_probs=33.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCe
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRM 37 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m 37 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+++++++.
T Consensus 36 ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 36 IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 799999999999999 9999999999999999988764
No 100
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.03 E-value=6.1e-10 Score=64.68 Aligned_cols=60 Identities=5% Similarity=0.064 Sum_probs=55.7
Q ss_pred cCCeeeEEECCCCC-EEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 34 RGRMQIFVKTSTGK-TITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 34 ~~~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
+..|+|+|++.+|+ .+.+.|+++++++.|+...+ |.|+.|.++.|.++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35599999999996 89999999999999999888 99999999999999999999999985
No 101
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=9.6e-11 Score=71.09 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|||+|++| |++|||++|++| +++++++
T Consensus 55 ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 55 LQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp CCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 799999999999999 999999999999 6666554
No 102
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.00 E-value=2.6e-10 Score=70.29 Aligned_cols=64 Identities=6% Similarity=0.156 Sum_probs=59.4
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEeeC
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRLS 97 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl~ 97 (97)
...|+|+|++.+|+.+.+.|+++++++.|+...+ |.|+.|.++.|.++|++++|++|++++.++
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 3459999999999999999999999999999888 999999999999999999999999998753
No 103
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.00 E-value=1.3e-10 Score=66.85 Aligned_cols=35 Identities=14% Similarity=0.477 Sum_probs=33.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|++| |++|||.+|++||++++..+
T Consensus 39 i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 39 VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 799999999999999 99999999999999998765
No 104
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.99 E-value=1.6e-10 Score=69.36 Aligned_cols=36 Identities=14% Similarity=0.455 Sum_probs=33.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|||+|+|++| |++|||.+|++|||++++.++
T Consensus 57 ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 57 VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 799999999999999 999999999999999987653
No 105
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=3.1e-10 Score=65.00 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=31.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|++| |++|||.+|++|||+++++
T Consensus 40 ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 40 VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 799999999999999 9999999999999998853
No 106
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.98 E-value=1.1e-10 Score=78.03 Aligned_cols=43 Identities=70% Similarity=0.988 Sum_probs=40.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEEC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVKT 43 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk~ 43 (97)
||+++|+|+|+|++| |++|||++|++|||++++.++..+|||.
T Consensus 141 Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~fvk~ 188 (189)
T 3q3f_A 141 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFTKI 188 (189)
T ss_dssp CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCCCCC
T ss_pred CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcceEec
Confidence 799999999999999 9999999999999999999999998864
No 107
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.98 E-value=2.8e-10 Score=68.14 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=29.4
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
||+++|||+|+|++| |++|||++|++|||..
T Consensus 57 ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 57 TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 799999999999999 9999999999999964
No 108
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.97 E-value=3.7e-10 Score=63.95 Aligned_cols=35 Identities=51% Similarity=0.831 Sum_probs=32.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||.+|++||+++++++
T Consensus 36 i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 36 IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 699999999999999 99999999999999998765
No 109
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.96 E-value=2.3e-10 Score=71.31 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCCCceEEEecCccc-----ccccccc-------CCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQ-------KESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~-------~~s~i~l~~~~~~ 35 (97)
||+++|||+|+|++| |++|||+ ++|+|||+++.++
T Consensus 37 IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr~~g 83 (118)
T 2fnj_B 37 RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEBSSS
T ss_pred CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEecCCC
Confidence 799999999999999 9999999 7999999999444
No 110
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.95 E-value=2.4e-10 Score=66.74 Aligned_cols=36 Identities=53% Similarity=0.848 Sum_probs=33.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||++|++|||+++++++
T Consensus 48 ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 48 IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 799999999999999 999999999999999998753
No 111
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.7e-10 Score=67.75 Aligned_cols=36 Identities=75% Similarity=1.104 Sum_probs=33.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||++|++|||+++++++
T Consensus 58 ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 58 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 799999999999999 999999999999999998763
No 112
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.93 E-value=4.2e-10 Score=66.50 Aligned_cols=34 Identities=76% Similarity=1.114 Sum_probs=32.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|+.| |++|||.+|++|||+++++
T Consensus 53 ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 53 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 799999999999999 9999999999999999863
No 113
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.5e-10 Score=70.28 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=40.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEEECCCCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFVKTSTGK 47 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~ 47 (97)
||+++|+|+|+||.| |++|||++|.+|||+.+...+-..=+|...|.
T Consensus 52 iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~~p~~~~~~~ 103 (118)
T 2daf_A 52 IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDLYPVRRIDGL 103 (118)
T ss_dssp CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTTSCCCCCCSC
T ss_pred CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCccCcceeccCc
Confidence 799999999999999 99999999999999999876655555555443
No 114
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.93 E-value=6.4e-10 Score=66.06 Aligned_cols=40 Identities=68% Similarity=0.986 Sum_probs=33.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeE
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIF 40 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~ 40 (97)
||+++|+|+|+|+.| |++|||.+|++|||++++.+++...
T Consensus 37 ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 37 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADLR 81 (96)
T ss_dssp CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-----
T ss_pred CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCccc
Confidence 799999999999999 9999999999999999998876643
No 115
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.92 E-value=4.2e-10 Score=65.96 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCCCceEEEecCcc-c-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKS-L-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~-L-----l~~y~i~~~s~i~l~~~ 32 (97)
||+++|+|+|+|++ | |++|||.+|++|+|+++
T Consensus 46 ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 46 IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 79999999999999 8 99999999999999886
No 116
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=6.6e-10 Score=64.38 Aligned_cols=36 Identities=56% Similarity=0.912 Sum_probs=32.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||+++++||++++++++
T Consensus 39 ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 39 IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 799999999999999 999999999999999997653
No 117
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.91 E-value=9.2e-10 Score=62.26 Aligned_cols=36 Identities=72% Similarity=1.100 Sum_probs=33.4
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++||++++++++
T Consensus 36 i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 699999999999999 999999999999999987653
No 118
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.91 E-value=3.9e-10 Score=67.17 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=33.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||.+|++|+|+++++++
T Consensus 53 ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 53 IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 799999999999999 999999999999999998763
No 119
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.91 E-value=7e-10 Score=65.23 Aligned_cols=35 Identities=37% Similarity=0.728 Sum_probs=31.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|||+|+|+.| |++||| +|++|||+++.++.
T Consensus 41 ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 41 IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 799999999999999 999999 89999999987643
No 120
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.90 E-value=7e-10 Score=64.99 Aligned_cols=31 Identities=42% Similarity=0.845 Sum_probs=29.4
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
||+++|+|+|+|+.| |++||| +|++|||++|
T Consensus 53 ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 53 IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 799999999999999 999999 8999999875
No 121
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.90 E-value=9e-10 Score=67.59 Aligned_cols=36 Identities=75% Similarity=1.104 Sum_probs=33.3
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|||+|+|+.| |++|||++|++|||+++++++
T Consensus 71 ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 71 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 799999999999999 999999999999999998753
No 122
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.90 E-value=4.8e-10 Score=65.97 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=31.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||.+|++|+|+.+..++
T Consensus 40 ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 40 VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 799999999999999 999999999999999987653
No 123
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.90 E-value=8.2e-10 Score=66.69 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCCceEEEecCccc-----cccccc-cCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNI-QKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i-~~~s~i~l~~~~~ 34 (97)
||+++|||+|+|++| |++||| ++|++|+|+++.+
T Consensus 58 ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 58 SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeCC
Confidence 699999999999999 999999 9999999998743
No 124
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=4.4e-10 Score=66.70 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=33.3
Q ss_pred CCCCceEEEecCccc-----cccc--cccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADY--NIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y--~i~~~s~i~l~~~~~~~ 36 (97)
||+++|||+|+|+.| |++| ||.++++|||+++++++
T Consensus 47 i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~gg 89 (93)
T 1wgd_A 47 PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSG 89 (93)
T ss_dssp CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCCCC
T ss_pred CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCCCC
Confidence 689999999999999 9999 99999999999987653
No 125
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=8.1e-10 Score=64.77 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=33.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|||+++++++
T Consensus 45 ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 45 VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 799999999999999 999999999999999998765
No 126
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.88 E-value=1e-09 Score=68.17 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=30.8
Q ss_pred CCCCceEEEecCccc-----cccccccCC--CcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKE--STLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~--s~i~l~~~~~~ 35 (97)
||+++|||||+|++| |++|+|..+ +++||++++..
T Consensus 60 ~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~~ 101 (116)
T 1wgh_A 60 SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETL 101 (116)
T ss_dssp CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECSSC
T ss_pred CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEccCCC
Confidence 479999999999999 999999866 78999998753
No 127
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=5.8e-10 Score=65.98 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=31.1
Q ss_pred CCCCceEEEecCccc-----cccccc-cCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNI-QKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i-~~~s~i~l~~~~ 33 (97)
||+++|||+|+|++| |++||| ++|++|+|..+.
T Consensus 40 ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 40 SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 699999999999999 999999 799999999874
No 128
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.88 E-value=1.2e-09 Score=63.32 Aligned_cols=34 Identities=26% Similarity=0.562 Sum_probs=30.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|+.| |++|||.+|++|||+.+.+
T Consensus 44 ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 44 FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 689999999999999 9999999999999998754
No 129
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.88 E-value=1.1e-09 Score=68.84 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCC--CceEEEecCccc-----cccccccCC------CcceeeeeecCC
Q 042212 1 MPL--EQQRLVFADKSL-----LADYNIQKE------STLHLVARLRGR 36 (97)
Q Consensus 1 ip~--~~q~L~~~~~~L-----l~~y~i~~~------s~i~l~~~~~~~ 36 (97)
||+ ++|||||+||+| |++|+|++| +++||+++++++
T Consensus 58 iP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 58 GPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp SCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSS
T ss_pred CCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCCc
Confidence 565 899999999999 999999999 789999998754
No 130
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.39 E-value=2e-10 Score=65.40 Aligned_cols=35 Identities=34% Similarity=0.695 Sum_probs=33.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||.+|++|||++++++
T Consensus 36 i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 36 VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 699999999999999 99999999999999999765
No 131
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=9.3e-10 Score=64.78 Aligned_cols=36 Identities=75% Similarity=1.104 Sum_probs=30.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+++++++
T Consensus 45 ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 45 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 799999999999999 999999999999999987754
No 132
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.87 E-value=8.3e-10 Score=65.95 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCCceEEEecCccc------cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL------LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L------l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||++|++|+|+++++++
T Consensus 50 ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 50 TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 799999999999988 999999999999999998764
No 133
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=8.7e-10 Score=64.32 Aligned_cols=36 Identities=36% Similarity=0.488 Sum_probs=33.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.++++|||++++.++
T Consensus 43 i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 43 LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 799999999999999 999999999999999998765
No 134
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.86 E-value=1e-09 Score=67.65 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=33.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|||+++++++
T Consensus 71 ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 71 MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111 (115)
T ss_dssp CCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSC
T ss_pred CChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 799999999999999 999999999999999998765
No 135
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=1.3e-09 Score=63.07 Aligned_cols=36 Identities=67% Similarity=0.960 Sum_probs=33.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.++++|||+++++++
T Consensus 39 i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 39 IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 799999999999999 999999999999999997653
No 136
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.86 E-value=1.2e-09 Score=66.92 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=33.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|||+++++++
T Consensus 67 ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 67 IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 799999999999999 999999999999999997764
No 137
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=62.37 Aligned_cols=33 Identities=48% Similarity=0.803 Sum_probs=31.3
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|+|+.| |++|||.+|++||+++++
T Consensus 43 i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 43 VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 699999999999999 999999999999999875
No 138
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.83 E-value=2.7e-09 Score=63.59 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=31.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+++.+
T Consensus 39 ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 39 FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 699999999999999 9999999999999998754
No 139
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.5e-09 Score=66.11 Aligned_cols=35 Identities=11% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|||+|+|+.| |++|||++|++|+|+++.+.
T Consensus 37 ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 37 CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 699999999999999 99999999999999998543
No 140
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=2.1e-09 Score=64.87 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=32.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+++.++
T Consensus 57 ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 57 AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 799999999999999 99999999999999998764
No 141
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.79 E-value=3e-09 Score=62.71 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=29.8
Q ss_pred CCCCceEEEe-------cCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVF-------ADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~-------~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|||+| +|++| |++|||++|++|||+-+.|
T Consensus 40 ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 40 TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 7999999996 57777 9999999999999987643
No 142
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.79 E-value=4e-09 Score=59.94 Aligned_cols=32 Identities=38% Similarity=0.754 Sum_probs=30.3
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
||+++|+|+|+|+.| |++|||.+|++||++.+
T Consensus 39 i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 39 IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 699999999999999 99999999999999875
No 143
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.77 E-value=5e-09 Score=63.22 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=32.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+.+.++
T Consensus 60 ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 60 SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 799999999999999 99999999999999998654
No 144
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.76 E-value=5.3e-09 Score=64.03 Aligned_cols=35 Identities=77% Similarity=1.145 Sum_probs=33.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+|+|+.| |++|||.+|++|||++++++
T Consensus 71 ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 71 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 699999999999999 99999999999999999765
No 145
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.3e-09 Score=64.79 Aligned_cols=33 Identities=36% Similarity=0.715 Sum_probs=30.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|+|+.| |++|||++|++|+|+.+.
T Consensus 63 ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 63 IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 799999999999999 999999999999998763
No 146
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.74 E-value=1.1e-09 Score=68.66 Aligned_cols=36 Identities=75% Similarity=1.104 Sum_probs=0.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||.+|++|||+++++++
T Consensus 36 ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -----------------------------------------
T ss_pred cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 699999999999999 999999999999999998765
No 147
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=4.6e-09 Score=63.83 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|++| |++|||.+|++|||+++.+
T Consensus 59 ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 59 VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 799999999999999 9999999999999999754
No 148
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.73 E-value=1.5e-09 Score=64.65 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=33.3
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|||+++..++
T Consensus 52 ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 52 CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 699999999999999 999999999999999987653
No 149
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.73 E-value=6.3e-09 Score=65.19 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|+|+.+..++
T Consensus 67 ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 67 SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 699999999999999 999999999999999987653
No 150
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.72 E-value=1.3e-09 Score=70.52 Aligned_cols=36 Identities=75% Similarity=1.104 Sum_probs=0.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||.+|++|||++++.++
T Consensus 36 ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 36 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------
T ss_pred CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 799999999999999 999999999999999998754
No 151
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.70 E-value=5.9e-09 Score=63.25 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=33.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|+.| |++|||.+|++|||+++..+.
T Consensus 52 ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 52 AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 689999999999999 999999999999999987643
No 152
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.70 E-value=9e-09 Score=64.64 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCCceEEEecCccc-----cccccccCCC--cceeeeeecC
Q 042212 2 PLEQQRLVFADKSL-----LADYNIQKES--TLHLVARLRG 35 (97)
Q Consensus 2 p~~~q~L~~~~~~L-----l~~y~i~~~s--~i~l~~~~~~ 35 (97)
|+++|||||+|++| |++|||++++ ++||++++.+
T Consensus 62 ~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 62 SPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETL 102 (125)
T ss_dssp CGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEEECSCC
T ss_pred ChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEecCCC
Confidence 58999999999999 9999999665 7899998754
No 153
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.69 E-value=8.5e-09 Score=62.77 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=31.7
Q ss_pred CCCCc-eEEEecCccc-----cccccccCCCcceeeeeec
Q 042212 1 MPLEQ-QRLVFADKSL-----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~-q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++ |+|+|+|+.| |++|||.+|++|||+.+..
T Consensus 62 ip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 62 VPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp CCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESSC
T ss_pred CChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCCC
Confidence 68999 9999999999 9999999999999998754
No 154
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.69 E-value=8e-09 Score=60.46 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=30.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
||+++|+|+|+|++| |++|||.+|++|+|+.+
T Consensus 47 ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 47 VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 799999999999999 99999999999999865
No 155
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.68 E-value=4.4e-08 Score=58.50 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=46.9
Q ss_pred eeeEEEC---CCCCEEEEeecCCCcHHHhhcccc-------------CC-------CeeC-CCCCcccccccCCCCEEEE
Q 042212 37 MQIFVKT---STGKTITLEVESSDMIDNASRGSS-------------SP-------AGNF-EDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 37 m~i~vk~---~~g~~~~l~v~~~~tV~~lK~~I~-------------~~-------gk~L-~d~~tL~~y~I~~~sti~l 92 (97)
+.+.|+. .+|+.+...+.+++||.+||.+|+ |. ...| +|.++|++|++.+|++||+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 5555653 467899999999999999999999 22 1225 7788999999999999998
Q ss_pred EE
Q 042212 93 VL 94 (97)
Q Consensus 93 ~~ 94 (97)
..
T Consensus 90 ~d 91 (97)
T 1wjn_A 90 RW 91 (97)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 156
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.66 E-value=4.3e-09 Score=64.27 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=30.4
Q ss_pred CceEEEecCccc------cccccccCCCcceeeeeecCC
Q 042212 4 EQQRLVFADKSL------LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 4 ~~q~L~~~~~~L------l~~y~i~~~s~i~l~~~~~~~ 36 (97)
++|+|+|+|++| |++|||++|++|||+.++++.
T Consensus 61 ~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 61 RTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp TTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECSCSC
T ss_pred eeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEehhccC
Confidence 679999999998 999999999999999998764
No 157
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.63 E-value=1.9e-08 Score=61.37 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCCceEEEecCccc-----cccccc-cCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNI-QKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i-~~~s~i~l~~~~ 33 (97)
||+++|||+|+|+.+ |++||| ++|+++||++..
T Consensus 62 ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 62 FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 799999999999976 999999 599999999864
No 158
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.63 E-value=6.2e-09 Score=62.85 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=32.9
Q ss_pred CCCCceEEEecCccc------cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL------LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L------l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++| |++|||++|++|||+.+.+++
T Consensus 47 ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~gg 88 (102)
T 1v5o_A 47 VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVG 88 (102)
T ss_dssp CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCCC
T ss_pred cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCCC
Confidence 799999999999998 999999999999999987543
No 159
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.57 E-value=1.8e-08 Score=59.52 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.3
Q ss_pred CCCCceEEEecCccc------cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL------LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L------l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|+.| |++|||.+|++|||+.+..
T Consensus 47 ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 47 VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 799999999999998 9999999999999988654
No 160
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.54 E-value=3.2e-08 Score=59.53 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCCCceEEEecCc------cc------cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADK------SL------LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~------~L------l~~y~i~~~s~i~l~~~ 32 (97)
||+++|||+|.|+ +| |++|||++|++|||+=.
T Consensus 52 ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 52 TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 7999999999883 34 99999999999998753
No 161
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.53 E-value=2.6e-07 Score=57.19 Aligned_cols=61 Identities=10% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
..+.|+|+..+|+.+.+.|.+++++..|+...+ |.|+.|.++.|.+++++++|++|++.+.
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 348999999999999999999999999998877 9999999999999999999999999875
No 162
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.51 E-value=3.9e-08 Score=58.88 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCCceEEEec--Cc---cc------cccccccCCCcceee
Q 042212 1 MPLEQQRLVFA--DK---SL------LADYNIQKESTLHLV 30 (97)
Q Consensus 1 ip~~~q~L~~~--~~---~L------l~~y~i~~~s~i~l~ 30 (97)
||+++|||+|+ |+ +| |++|||++|++|||+
T Consensus 53 iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 53 GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 79999999998 44 44 999999999999986
No 163
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.50 E-value=6.4e-08 Score=60.21 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCCCceEEEecC---c---cc------cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCC------CcHHHh
Q 042212 1 MPLEQQRLVFAD---K---SL------LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESS------DMIDNA 62 (97)
Q Consensus 1 ip~~~q~L~~~~---~---~L------l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~------~tV~~l 62 (97)
||+++|||+|.| + +| |++|||++|++|||+...+.. .-+ .. ....-.++++.. +||...
T Consensus 43 ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~-~~~-~d-~s~v~ky~~~~e~Y~~r~~tv~~~ 119 (122)
T 1t0y_A 43 TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN-EDF-KD-ESMVEKYEMSDDTYGKRTDSVRAW 119 (122)
T ss_dssp CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC-CC-----------------------------
T ss_pred CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC-CCc-cc-cccceeeecCHHHHhcchhHHHHH
Confidence 799999999987 3 34 999999999999999854432 111 11 112223444444 677777
Q ss_pred hc
Q 042212 63 SR 64 (97)
Q Consensus 63 K~ 64 (97)
|+
T Consensus 120 k~ 121 (122)
T 1t0y_A 120 KK 121 (122)
T ss_dssp --
T ss_pred hh
Confidence 65
No 164
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.46 E-value=7.5e-08 Score=57.08 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=30.0
Q ss_pred CCceEEEecCccc------cccccccCCCcceeeeeecC
Q 042212 3 LEQQRLVFADKSL------LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 3 ~~~q~L~~~~~~L------l~~y~i~~~s~i~l~~~~~~ 35 (97)
+++|||+|+|+.| |++|||.+|++|||+++.+.
T Consensus 42 ~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 42 ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 4789999999998 99999999999999998654
No 165
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.45 E-value=3.9e-08 Score=58.81 Aligned_cols=34 Identities=9% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCCceEEEecCccc----cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADKSL----LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~~L----l~~y~i~~~s~i~l~~~~~ 34 (97)
||+++|+|+|+|++| |++|||.+|++|+|+....
T Consensus 43 ip~~~QkLi~~Gk~L~D~tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 43 VQPARQKVMVKGGTLKDDDWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCTTTSCCEETTEECCSSCCCSCCCCSSCEEECCCCCC
T ss_pred cCHHHeEEEECCcCCCCCCHHHCCCCCCCEEEEEecch
Confidence 799999999999999 9999999999999988654
No 166
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.40 E-value=8.3e-08 Score=56.60 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCCCceEEE---ecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLV---FADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~---~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+ |+|++| |++|||.+|++|+|+...
T Consensus 43 ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 43 VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 799999999 999998 999999999999998764
No 167
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.38 E-value=2.4e-07 Score=53.76 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=47.1
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCC-eeC--CCCCcccccccCCCCEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPA-GNF--EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~g-k~L--~d~~tL~~y~I~~~sti~l~ 93 (97)
..|.|.||+.+| ++.+++++++|+.+|+++|+ +.- +.| .++.+|+++|+++|+++++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 458999999988 66789999999999999999 111 223 47789999999999999875
No 168
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.37 E-value=1.5e-07 Score=66.90 Aligned_cols=33 Identities=76% Similarity=1.101 Sum_probs=30.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|+|++| |++|||.++++|||++++
T Consensus 269 Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 269 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 799999999999999 999999999999999985
No 169
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.33 E-value=4.8e-08 Score=58.24 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=30.7
Q ss_pred CCCCceEEEecCccc----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADKSL----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~~L----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|.|++| |++|||.+|++|||+.+.
T Consensus 52 ip~~~QrL~~~Gk~Ldd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 52 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp SCSTTCCCBSSSBCCSSSBHHHHCCCTTEEEEECCSS
T ss_pred cCHHHeEEEECCeeCCcCcHHHCCCCCCCEEEEEecc
Confidence 799999999999999 999999999999998753
No 170
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.32 E-value=1.6e-07 Score=55.91 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=27.9
Q ss_pred CCCCceEEEecC---c---cc------cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFAD---K---SL------LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~---~---~L------l~~y~i~~~s~i~l~~~ 32 (97)
||+++|||+|+| + +| |++|||++|++|||+-.
T Consensus 44 ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 44 SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 799999999987 3 24 99999999999998764
No 171
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.3e-06 Score=58.71 Aligned_cols=61 Identities=7% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
.-++|+|+. +|+.+.+.|.+++++..|+...+ |.|+.|.++.|.+++++++|++|++++.+
T Consensus 28 ~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 28 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp CCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 348888974 89999999999999999998877 99999999999999999999999999875
No 172
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-07 Score=55.08 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=26.6
Q ss_pred CCCCceEEEec--Cccc-----cccccccCCCccee
Q 042212 1 MPLEQQRLVFA--DKSL-----LADYNIQKESTLHL 29 (97)
Q Consensus 1 ip~~~q~L~~~--~~~L-----l~~y~i~~~s~i~l 29 (97)
||+++|||+|. |++| |++|||.+|++||+
T Consensus 50 i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 50 WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 68999999987 8899 99999999999876
No 173
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.26 E-value=5.2e-07 Score=65.54 Aligned_cols=35 Identities=29% Similarity=0.645 Sum_probs=31.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcc-eeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTL-HLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i-~l~~~~~~ 35 (97)
||+++|||+|+|+.| |++|||.+|++| ||+.+.++
T Consensus 46 ip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 46 FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred CChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 689999999999999 999999999999 77776643
No 174
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.7e-06 Score=57.97 Aligned_cols=60 Identities=7% Similarity=0.104 Sum_probs=54.9
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
.+.|+|+. +|..+.+.|.+++++..|+...+ |.|+.|.++.|.+++++++|++|++++..
T Consensus 57 ~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 57 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCC
T ss_pred cEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 48888874 89999999999999999998877 99999999999999999999999998764
No 175
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.21 E-value=8.4e-07 Score=52.91 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|||+|+|++| .++|++++|++|+++++..++
T Consensus 43 i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 43 LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 689999999999999 999999999999999987654
No 176
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=2.5e-07 Score=55.94 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCCCceEEEe--cCccc-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVF--ADKSL-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~--~~~~L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+| +|+ | |++|+|++|+++||++..
T Consensus 44 Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 44 IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 7999999996 554 7 999999999999998863
No 177
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.13 E-value=3.2e-07 Score=61.22 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCCceEEEecCccccccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSLLADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~Ll~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|+|+|+|++|=.+.-|.++|+|||+++++++
T Consensus 36 IP~~qQRLIf~GK~LeD~~TLs~~STLhLvlRLrGG 71 (189)
T 2xzm_9 36 FEIDMMTLVNNGFIAPNTELVTDDVTYYLSLKLLGG 71 (189)
T ss_dssp ------------------------------------
T ss_pred cChhHEEEEecCeECCCCCcccCCCEEEEEEecCCC
Confidence 799999999999999111122299999999998765
No 178
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=97.96 E-value=6.5e-06 Score=48.77 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++||++|+|++| .++|++.+|++|+++++..++
T Consensus 41 i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 41 LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 688999999999999 999999999999999987654
No 179
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=97.95 E-value=5e-06 Score=49.36 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=31.2
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++||++|.|++| .++|++.+|.+|+++++..+
T Consensus 53 i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 53 LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 688999999999999 99999999999999998654
No 180
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.93 E-value=1.3e-06 Score=59.29 Aligned_cols=62 Identities=6% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
...|.|+| ..+|+.+.+.|++++++..|++..+ |.|+.+.++.|.+++++++|++|++++..
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 34588999 7799999999999999999998887 99999999999999999999999998764
No 181
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.86 E-value=2.6e-06 Score=51.70 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCCCceEEEecCc-----------c----c-----cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFADK-----------S----L-----LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~~-----------~----L-----l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|.++ + + |++|||.+|++|||+...
T Consensus 43 ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 43 IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEG 95 (107)
T ss_dssp CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSS
T ss_pred cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCC
Confidence 7999999999888 4 4 999999999999998764
No 182
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=97.84 E-value=4.4e-06 Score=59.62 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCCCceEEE---ecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLV---FADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~---~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++|+|+ |+|++| |++|||++|++|+|+-+...
T Consensus 40 Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 40 VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 799999999 999999 99999999999999876544
No 183
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=97.82 E-value=1e-05 Score=45.67 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=28.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
||+++||++|+|++| .++|++.+|++|++++
T Consensus 37 i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 37 LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 688999999999999 9999999999999863
No 184
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.77 E-value=8.5e-06 Score=49.41 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
||+++|||+|.|++| .++|++.+|.+|+++++..++
T Consensus 60 i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 60 LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 688999999999999 999999999999999986553
No 185
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=97.74 E-value=1.8e-05 Score=48.15 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
||+++||++|+|++| .++|++.+|++|+++++..+
T Consensus 66 i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 66 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 688999999999999 99999999999999987654
No 186
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=97.73 E-value=5.3e-05 Score=46.42 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCEEEEeecCCCcHHHhhcccc-------------------------CCCeeCCCC-------------CcccccccCCC
Q 042212 46 GKTITLEVESSDMIDNASRGSS-------------------------SPAGNFEDG-------------WTQADYNIQKE 87 (97)
Q Consensus 46 g~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk~L~d~-------------~tL~~y~I~~~ 87 (97)
+..+++.|-..|||.++|+||- -.|+.|.|. .||++|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4668888989999999999998 334566552 48999999999
Q ss_pred CEEEEEEe
Q 042212 88 STLHFVLR 95 (97)
Q Consensus 88 sti~l~~r 95 (97)
+++.++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99999865
No 187
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.72 E-value=0.00011 Score=42.47 Aligned_cols=58 Identities=9% Similarity=0.184 Sum_probs=47.9
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+.+..+......+.+.+.++.+|.++-+.-. |.|..|+++.++++|++++|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4455666666778899999999998754333 999999999999999999999999875
No 188
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.67 E-value=1.1e-05 Score=49.38 Aligned_cols=37 Identities=8% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCe
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRM 37 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m 37 (97)
||+++||++|.|++| .++|++.+|.+|++++...+++
T Consensus 62 i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 62 ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 688999999999999 9999999999999999877653
No 189
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.58 E-value=0.00011 Score=46.12 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=49.2
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc-------C------------------------------------------
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS-------S------------------------------------------ 68 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------~------------------------------------------ 68 (97)
.+.|+.++|+..++.|+.+.+|.+++..|+ +
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 588999999999999999999999999988 2
Q ss_pred ---CCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 69 ---PAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 69 ---~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
++..|++++||.++||.+++++-|-.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 014567799999999999999776543
No 190
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.57 E-value=3.2e-05 Score=44.45 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLV 30 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~ 30 (97)
||+++||++|.|++| .++|++.+|.+|++.
T Consensus 44 i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 44 LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 688999999999999 999999999999975
No 191
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.49 E-value=3.4e-05 Score=44.77 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCCceEEEecC--ccc--------cccccccCCCcceeeeee
Q 042212 1 MPLEQQRLVFAD--KSL--------LADYNIQKESTLHLVARL 33 (97)
Q Consensus 1 ip~~~q~L~~~~--~~L--------l~~y~i~~~s~i~l~~~~ 33 (97)
||+++|+|+|+. ++| |++|||.+|++||+....
T Consensus 36 i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 36 IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 689999999874 554 999999999999988653
No 192
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.47 E-value=0.00036 Score=40.28 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=50.9
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeC---CCCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNF---EDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L---~d~~tL~~y~I~~~sti~l~~ 94 (97)
+...|.||.++|+.+.-....++||.+|.+-|. |-.+.+ +.+.||.+.|+.+.+++.+--
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 346789999999998889999999999998776 667878 347899999999999988754
No 193
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.46 E-value=0.00019 Score=42.93 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCeeeEEECCCCC-EEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 35 GRMQIFVKTSTGK-TITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 35 ~~m~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
..+.|.|+..+|. .+.+.|.++.+...|...-+ |.|..|.++.|.++.++++|++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4488888888884 88999999999888876655 99999999999999999999999874
No 194
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.46 E-value=6.5e-05 Score=44.48 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCCceEEEecCc------c-c------cccccccCCCcceeeeeec
Q 042212 1 MPLEQQRLVFADK------S-L------LADYNIQKESTLHLVARLR 34 (97)
Q Consensus 1 ip~~~q~L~~~~~------~-L------l~~y~i~~~s~i~l~~~~~ 34 (97)
+|+.+|+|+|.+. . | |++|||.+|++||+....+
T Consensus 48 ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p 94 (97)
T 1wjn_A 48 VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGP 94 (97)
T ss_dssp CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSS
T ss_pred CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCC
Confidence 6999999998741 1 4 9999999999999987543
No 195
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=97.44 E-value=0.00052 Score=42.87 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=40.7
Q ss_pred CCCEEEEeecCCCcHHHhhcccc-------------------------CCCe-eCCCC-------------CcccccccC
Q 042212 45 TGKTITLEVESSDMIDNASRGSS-------------------------SPAG-NFEDG-------------WTQADYNIQ 85 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk-~L~d~-------------~tL~~y~I~ 85 (97)
++..+++.|-..|||.++|+||- -.|+ .|.|. .||++|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45678888989999999999998 2233 35542 589999999
Q ss_pred CCCEEEEEEe
Q 042212 86 KESTLHFVLR 95 (97)
Q Consensus 86 ~~sti~l~~r 95 (97)
+|+++.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999865
No 196
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.43 E-value=0.00022 Score=42.14 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=52.5
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+++|.+.|-..+|+..++.|.|+.++.++-+.-. |+++.|+-..++.-.|+.+|+.+.++-.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 4568999999999999999999999999744333 8999999999999999999999999754
No 197
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=97.37 E-value=0.00031 Score=44.47 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=40.3
Q ss_pred CEEEEeecCCCcHHHhhcccc-------------------------CCCe-eCCCC-------------CcccccccCCC
Q 042212 47 KTITLEVESSDMIDNASRGSS-------------------------SPAG-NFEDG-------------WTQADYNIQKE 87 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk-~L~d~-------------~tL~~y~I~~~ 87 (97)
..+++.|-..|||.++|+||- -+|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 578899999999999999998 2243 36553 38999999999
Q ss_pred CEEEEEEee
Q 042212 88 STLHFVLRL 96 (97)
Q Consensus 88 sti~l~~rl 96 (97)
+++.++.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998763
No 198
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.35 E-value=2.8e-05 Score=56.33 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=0.0
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
...+.|+|+. +|+.+.+.|.++++.+.|+...+ |.|+.+.++.|.+++++++|++|++....
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 3458888887 68888999999999999999888 99999999999999999999999998764
No 199
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.33 E-value=0.00044 Score=40.07 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCCCEEEEeecCCCcHHHhhcccc------------------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 44 STGKTITLEVESSDMIDNASRGSS------------------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 44 ~~g~~~~l~v~~~~tV~~lK~~I~------------------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
-.|+++-+.++...||+.|++.+. -.+..|.++.+|++|+|++|+.+.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 478999999999999999988766 4467789999999999999999875
No 200
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=97.26 E-value=0.00043 Score=42.75 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCEEEEeecCCCcHHHhhcccc-------------------------CCCe-eCCCC-------------CcccccccCC
Q 042212 46 GKTITLEVESSDMIDNASRGSS-------------------------SPAG-NFEDG-------------WTQADYNIQK 86 (97)
Q Consensus 46 g~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk-~L~d~-------------~tL~~y~I~~ 86 (97)
...+++.|-..|||.++|+||- -+|+ .|.|. .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4568888889999999999998 1223 24441 4899999999
Q ss_pred CCEEEEEEe
Q 042212 87 ESTLHFVLR 95 (97)
Q Consensus 87 ~sti~l~~r 95 (97)
|+++.++.|
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999999876
No 201
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.06 E-value=0.0021 Score=38.97 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------------CCCeeCC---CCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------------SPAGNFE---DGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------------~~gk~L~---d~~tL~~y~I~~~sti~l~~ 94 (97)
+...|.||.++|+.+.-....++||.+|.+-|. |-.+.+. .+.||.+.|+.+.+++.+..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 357899999999999999999999999998886 6677785 36899999999998888754
No 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.02 E-value=0.0013 Score=44.11 Aligned_cols=64 Identities=6% Similarity=0.102 Sum_probs=55.8
Q ss_pred eeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 31 ARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 31 ~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+.....+.|+|+. +|+.+.+.+..+++...|+...+ |.|+.+.++.|..+.+.+++++|++...
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 3344568888987 78888999999999999999888 9999999999999999999999998765
No 203
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0019 Score=43.31 Aligned_cols=55 Identities=7% Similarity=0.238 Sum_probs=42.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC----CeeeEEECCCCCEEEEeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG----RMQIFVKTSTGKTITLEVESS 56 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~----~m~i~vk~~~g~~~~l~v~~~ 56 (97)
+|.+++|++|.|+.+ ..++++.+|.+|++++...+ ++.+..+.-.| +..+.++++
T Consensus 64 i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~kd~v~Fs~~GD~G-~~~i~l~~~ 127 (200)
T 3pge_A 64 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGGETIKFVADGDIG-SGSVIIKPF 127 (200)
T ss_dssp SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-CCEEEEEECSSC-EEEEEECCB
T ss_pred CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcCceEEEEeeccCC-eEEEEEecC
Confidence 588999999999999 99999999999999998653 36666655444 334445443
No 204
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.73 E-value=0.0037 Score=38.71 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=51.4
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeC--CC-CCcccccccCCCCEEEEE
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNF--ED-GWTQADYNIQKESTLHFV 93 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L--~d-~~tL~~y~I~~~sti~l~ 93 (97)
.+...|.||.++|+.+.-....++||.+|..-|. |-.+.| +| +.||.+.|+.+.+++.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 3458999999999999999999999999998876 677888 33 789999999998887765
No 205
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.69 E-value=0.00026 Score=51.21 Aligned_cols=60 Identities=5% Similarity=0.090 Sum_probs=0.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
.+.|+|+. +|..+.+.|.++++.+.|+...+ |.|+.+.++.|.++.++++|++|++.+..
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecc
Confidence 37777877 77888899999999999998887 99999999999999999999999987653
No 206
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.63 E-value=0.0039 Score=37.64 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CCCeeCC--CCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SPAGNFE--DGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~gk~L~--d~~tL~~y~I~~~sti~l~~ 94 (97)
+..+|.||.++|+.+.-....++||.+|..-|. |-.+.|. .+.||.+.|+.+.+++.+.-
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 348899999999998889999999999988776 6677785 47899999999999887753
No 207
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.50 E-value=0.014 Score=41.68 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=61.0
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------CC---------Cee
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------SP---------AGN 72 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~~---------gk~ 72 (97)
|..|++++|..++..-+ .+.+.|..++|....+.++++.|+.++-+.|+ +. -..
T Consensus 68 l~~y~~~~~~~l~~~~~---~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~w 144 (371)
T 3ivf_A 68 LDYYMLRNGDTMEYRKK---QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNW 144 (371)
T ss_dssp GGGGTCCTTCEEEEEEC---EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------C
T ss_pred HHHhCCCCCceeeccCc---eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHH
Confidence 99999999998887665 58899999999999999999999999988877 11 134
Q ss_pred CCCCCcccccccCCCCEEEEEEe
Q 042212 73 FEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 73 L~d~~tL~~y~I~~~sti~l~~r 95 (97)
|+.++++.+.+.....++.+..|
T Consensus 145 L~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 145 LDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp CCTTSBTGGGTCCTTCEEEEEEC
T ss_pred HhcCchhHhhCCCCCceEEEEEE
Confidence 56677788777766777666544
No 208
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.50 E-value=0.0039 Score=38.73 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=47.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCC-CCcccccccCCCCEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFED-GWTQADYNIQKESTL 90 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d-~~tL~~y~I~~~sti 90 (97)
....|.||..+|+.+.-....++||.+|.+-|. |-.+.++| +.||.+.|+.+.+++
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 358899999999999999999999999988876 66788865 689999999985544
No 209
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.44 E-value=0.0081 Score=35.68 Aligned_cols=58 Identities=7% Similarity=0.101 Sum_probs=50.8
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.+.|.|+. +|..+.+.+..++..+.|..-.+ |.|..+.++.|-++.+++++++|.+++
T Consensus 21 ~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 21 LFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred eEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 38888884 78899999999998888776655 999999999999999999999998875
No 210
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=96.39 E-value=0.0091 Score=37.17 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=36.6
Q ss_pred CEEEEeecCCCcHHHhhcccc---C-------C---------------CeeC----------CCC----CcccccccCCC
Q 042212 47 KTITLEVESSDMIDNASRGSS---S-------P---------------AGNF----------EDG----WTQADYNIQKE 87 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~---~-------~---------------gk~L----------~d~----~tL~~y~I~~~ 87 (97)
..+++.|-..|||.++|+||- | + |..| +++ .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 568888989999999999998 3 1 1222 222 47889999999
Q ss_pred CEEEEEE
Q 042212 88 STLHFVL 94 (97)
Q Consensus 88 sti~l~~ 94 (97)
+++.++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998863
No 211
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=96.21 E-value=0.0046 Score=37.98 Aligned_cols=32 Identities=13% Similarity=0.472 Sum_probs=29.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVAR 32 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~ 32 (97)
+|.+++|++|.|+.| ..++++.+|.+|++++.
T Consensus 76 l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 76 VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 588999999999999 99999999999999875
No 212
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=96.14 E-value=0.013 Score=44.97 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=42.9
Q ss_pred eeeEEECCC---CCEEEEeecCCCcHHHhhcccc-------------------------CCCe-eCCCC-----------
Q 042212 37 MQIFVKTST---GKTITLEVESSDMIDNASRGSS-------------------------SPAG-NFEDG----------- 76 (97)
Q Consensus 37 m~i~vk~~~---g~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk-~L~d~----------- 76 (97)
+.+.+-..+ ...+.+.|-..|||.++|+||- -+|+ .|.|.
T Consensus 234 ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wk 313 (627)
T 3ig3_A 234 LTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWK 313 (627)
T ss_dssp EEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEE
T ss_pred EEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCcee
Confidence 444454333 3678889999999999999998 1222 34441
Q ss_pred --CcccccccCCCCEEEEEEe
Q 042212 77 --WTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 77 --~tL~~y~I~~~sti~l~~r 95 (97)
.||++|+|.+|+++.++.|
T Consensus 314 rLNTL~HY~V~Dga~v~L~p~ 334 (627)
T 3ig3_A 314 RVNSLAHYQVTDGSLVALVPK 334 (627)
T ss_dssp ECCBTTTTTCCTTCEEEEEEC
T ss_pred EecchhhcCCCCCceEEEEec
Confidence 4899999999999998765
No 213
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.83 E-value=0.0031 Score=37.80 Aligned_cols=15 Identities=7% Similarity=-0.237 Sum_probs=14.1
Q ss_pred CCCCceEEEecCccc
Q 042212 1 MPLEQQRLVFADKSL 15 (97)
Q Consensus 1 ip~~~q~L~~~~~~L 15 (97)
||+++|||+|+|++|
T Consensus 64 ip~~qQrLi~~Gk~L 78 (100)
T 1uh6_A 64 TRWNKIVLKKWYTIF 78 (100)
T ss_dssp CCGGGCEEEETTEEC
T ss_pred CCHHHEEEEECCEEC
Confidence 799999999999987
No 214
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=95.82 E-value=0.019 Score=44.25 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=39.1
Q ss_pred CEEEEeecCCCcHHHhhcccc-------------------------CCCe-eCCCC-------------CcccccccCCC
Q 042212 47 KTITLEVESSDMIDNASRGSS-------------------------SPAG-NFEDG-------------WTQADYNIQKE 87 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~-------------------------~~gk-~L~d~-------------~tL~~y~I~~~ 87 (97)
..+.+.|-..|||.++|+||- ..|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 468888999999999999998 2233 35552 48999999999
Q ss_pred CEEEEEEe
Q 042212 88 STLHFVLR 95 (97)
Q Consensus 88 sti~l~~r 95 (97)
+++.++.+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99998765
No 215
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.76 E-value=0.0028 Score=37.78 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=12.5
Q ss_pred CCCceEEEecCccc
Q 042212 2 PLEQQRLVFADKSL 15 (97)
Q Consensus 2 p~~~q~L~~~~~~L 15 (97)
|+++|||+|+|++|
T Consensus 64 p~~~QrLIy~Gk~L 77 (99)
T 2kdb_A 64 LTKDQRLVYSGRLL 77 (99)
T ss_dssp CTTTCCEEETTEEE
T ss_pred ChhhEEEEECCEEC
Confidence 45999999999987
No 216
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0057 Score=40.92 Aligned_cols=36 Identities=6% Similarity=0.216 Sum_probs=32.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
+|+++++++|.|+.+ ..++++.+|.+|++++...++
T Consensus 92 L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 92 KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 688999999999999 999999999999999987655
No 217
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.32 E-value=0.042 Score=39.22 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=44.2
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc-----------------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS-----------------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-----------------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.+.|... +.+-++.++|+.||.++-.+|. -.|+-|++.+||+.|++++|+.++..-
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3344444 6778899999999999877764 135668999999999999999998764
Q ss_pred e
Q 042212 95 R 95 (97)
Q Consensus 95 r 95 (97)
+
T Consensus 84 ~ 84 (371)
T 3ivf_A 84 K 84 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 218
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=94.82 E-value=0.012 Score=34.89 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=14.3
Q ss_pred CCCCceEEEecCccc
Q 042212 1 MPLEQQRLVFADKSL 15 (97)
Q Consensus 1 ip~~~q~L~~~~~~L 15 (97)
||+++|+|+|+|++|
T Consensus 49 Ip~~~Q~LL~eg~~l 63 (94)
T 4efo_A 49 IISSNQELIYEGRRL 63 (94)
T ss_dssp CCGGGEEEEETTEEE
T ss_pred CCHHHHHHHhCCCcc
Confidence 899999999999998
No 219
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=94.52 E-value=0.0068 Score=41.11 Aligned_cols=36 Identities=8% Similarity=0.257 Sum_probs=0.5
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGR 36 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~ 36 (97)
+|++++|++|+|+.+ -+++++.+|.+|++++...++
T Consensus 56 Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 56 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ----------------------------------------C
T ss_pred CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 578899999999999 999999999999999987655
No 220
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.31 E-value=0.16 Score=28.38 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=37.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|.|+........+++++..||+++-+.+. .||+....+. +.+|+.+.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 6788877744556689999999999998888 6777765554 2347776653
No 221
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=94.16 E-value=0.069 Score=31.55 Aligned_cols=42 Identities=7% Similarity=-0.040 Sum_probs=33.3
Q ss_pred CCCCCEEEEeecCCCcHHHhhcccc-------------CCCeeC--CCCCccccccc
Q 042212 43 TSTGKTITLEVESSDMIDNASRGSS-------------SPAGNF--EDGWTQADYNI 84 (97)
Q Consensus 43 ~~~g~~~~l~v~~~~tV~~lK~~I~-------------~~gk~L--~d~~tL~~y~I 84 (97)
...++.+.+.+++++|+..+|++|+ |+|+.| +...+...|--
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 4467889999999999999999999 999775 45555556543
No 222
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.76 E-value=0.047 Score=31.83 Aligned_cols=52 Identities=4% Similarity=0.085 Sum_probs=43.5
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc----------------CCCeeCCCCCcccccccCC
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS----------------SPAGNFEDGWTQADYNIQK 86 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------------~~gk~L~d~~tL~~y~I~~ 86 (97)
.++++.|+....+...+.|+|.-+..++-.-|. -++.+|+-+++|.||||++
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 346677777766788889999999999988887 5678899999999999986
No 223
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=92.12 E-value=0.024 Score=41.06 Aligned_cols=38 Identities=11% Similarity=0.294 Sum_probs=0.9
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCee
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQ 38 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~ 38 (97)
+|++++|+.|.|+.+ -+++++++|.+|+++....++|+
T Consensus 56 ~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 56 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp -----------------------------------------CH
T ss_pred CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 477899999999998 99999999999999998766644
No 224
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=91.50 E-value=0.59 Score=25.24 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=34.4
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc-----------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS-----------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-----------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|.+.|..++|+.. +++...|+.++-+.+. .+|+..+-+ +-+++|+.|.++
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 6778887788864 5557788988876663 677765544 445567777665
No 225
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.50 E-value=0.49 Score=32.37 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=45.3
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc-----------------CCC--eeCCCCCcccccccCCCCEEEEEEee
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS-----------------SPA--GNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-----------------~~g--k~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
++.+.|..++| +..+.++++.|+.++-+.|. .+| ..|+.+.++.+.++..+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 36778888888 78899999999999988877 133 24677888888877666666666553
No 226
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=91.11 E-value=0.22 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=27.3
Q ss_pred CCCC-ceEEEecCccc-----cccccccCCCcceeee
Q 042212 1 MPLE-QQRLVFADKSL-----LADYNIQKESTLHLVA 31 (97)
Q Consensus 1 ip~~-~q~L~~~~~~L-----l~~y~i~~~s~i~l~~ 31 (97)
||.+ .-+|.|.|.-| +.||++.+|.-|.+++
T Consensus 45 I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 45 ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 5677 78999999999 9999999999988765
No 227
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.17 E-value=0.71 Score=31.95 Aligned_cols=62 Identities=10% Similarity=0.004 Sum_probs=47.6
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------C--CC--eeCCCCCcccccccCCCCEEEEEEe
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------S--PA--GNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~--~g--k~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+.++.+.|..++| ++.+.++++.|+.++-+.|. | +| ..|+.+.++.+.+++.+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4568889999999 88899999999999988877 1 22 2478888999988776666666655
Q ss_pred e
Q 042212 96 L 96 (97)
Q Consensus 96 l 96 (97)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 228
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.87 E-value=1.4 Score=23.89 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=38.2
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.|+|.|+...+ ...++++...|+.+|.+.+. .+|.....+. -+++|+.|.+.-
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 48888866432 34567777789999998875 6777766554 578899888764
No 229
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=88.39 E-value=0.89 Score=26.12 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=39.9
Q ss_pred EEEeecCCCcHHHhhcccc-------------------CCC--eeCCCCCcccccccCCCCEEEEEE
Q 042212 49 ITLEVESSDMIDNASRGSS-------------------SPA--GNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~-------------------~~g--k~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.-+.|+..+|+.++-++++ ++| +.+..+.|+++-||.+-..+.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4468899999999999988 666 889999999999999999988765
No 230
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.63 E-value=1.5 Score=33.36 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=46.6
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc--------------C---CC--eeCCCCCcccccccCCCCEEEEEE
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS--------------S---PA--GNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~--------------~---~g--k~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+.++.+.|..++| ++.+.|+++.|+.++-..|. | .| ..|+.+.++.+.++..+....+.+
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3457888889998 78899999999999988877 1 12 356778888888777777766666
Q ss_pred ee
Q 042212 95 RL 96 (97)
Q Consensus 95 rl 96 (97)
|.
T Consensus 81 Rv 82 (575)
T 2i1j_A 81 RA 82 (575)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 231
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=86.05 E-value=1.6 Score=25.95 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=45.6
Q ss_pred CeeeEEECCCC---CEEEEeecCCCcHHHhhcccc------------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 36 RMQIFVKTSTG---KTITLEVESSDMIDNASRGSS------------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 36 ~m~i~vk~~~g---~~~~l~v~~~~tV~~lK~~I~------------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+..|+|...+. ..+++.|..+.-|..+-.++- -+-..+.-..||..|||+.++.+++..
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 47788888654 568889998888887766554 223456888999999999999998865
Q ss_pred e
Q 042212 95 R 95 (97)
Q Consensus 95 r 95 (97)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=85.86 E-value=0.15 Score=36.67 Aligned_cols=41 Identities=7% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecCCeeeEE
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRGRMQIFV 41 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~~m~i~v 41 (97)
+|.+++++.|.|+.+ -.++|+.+|.+|+++....++....+
T Consensus 65 ~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~~ 110 (389)
T 4da1_A 65 KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYF 110 (389)
T ss_dssp ----------------------------------------------
T ss_pred CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccce
Confidence 478899999999999 99999999999999998665544433
No 233
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=85.78 E-value=1.7 Score=28.66 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCCceEEEecCccc-----cccccccCCCcceeeeeecC
Q 042212 1 MPLEQQRLVFADKSL-----LADYNIQKESTLHLVARLRG 35 (97)
Q Consensus 1 ip~~~q~L~~~~~~L-----l~~y~i~~~s~i~l~~~~~~ 35 (97)
+|.+++|++|.|+.+ -.+.++.++.+|.+.....+
T Consensus 56 ~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 56 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 588999999999998 88999999999999887544
No 234
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=85.13 E-value=1.3 Score=29.76 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=38.4
Q ss_pred EEEEeecCCCcHHHhhcccc---------------CC----CeeCCC-CCcccccccCCCCEEEEEEe
Q 042212 48 TITLEVESSDMIDNASRGSS---------------SP----AGNFED-GWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~---------------~~----gk~L~d-~~tL~~y~I~~~sti~l~~r 95 (97)
.+++.++..+||.++++++. |. ...|.| +.||.++++.++..|.+-.|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 35577899999999998887 22 345665 58999999999999988776
No 235
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=84.70 E-value=0.88 Score=26.18 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=39.8
Q ss_pred EEEeecCCCcHHHhhcccc------------------CCCee--CCCCCcccccccCCCCEEEEEE
Q 042212 49 ITLEVESSDMIDNASRGSS------------------SPAGN--FEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~------------------~~gk~--L~d~~tL~~y~I~~~sti~l~~ 94 (97)
.-+.|+..+|+.++-++++ .+|.. +..+.|+++-||++-..+.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4468899999999999988 66776 8999999999999999998765
No 236
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.50 E-value=0.56 Score=26.02 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=32.2
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|.| +|+... + ...|+.+|-+.+. .||..+..+ ..+++-+++|+.|.++
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEIL 59 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHHTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEE
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHHcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEE
Confidence 45555 466544 4 5689999988776 455544322 3445678889988876
No 237
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.40 E-value=1.1 Score=25.83 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCeeeEEECCCCCEEEEeecCC-CcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESS-DMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~-~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
..|+|.| +|+. ++++.. .||.+|.+.+. .||..+..+ ..++.-+++|+.|.++-
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 4587777 4554 455666 89999988876 445544322 33456789999998864
No 238
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=83.93 E-value=1.8 Score=29.89 Aligned_cols=60 Identities=7% Similarity=-0.106 Sum_probs=42.3
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc-----------------CCC--eeCCCCCcccccccCCCCEEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS-----------------SPA--GNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-----------------~~g--k~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
..+.+.|..++|...++.+++..|+.++-..|. -+| ..|+.+.++.+.......++.+.+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 458899999999999999999999999988887 112 346777777766544444454443
No 239
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=83.51 E-value=2.5 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=27.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+..-|.|-..+|...++.|++++|+.++=+.+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~ 40 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLV 40 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHH
Confidence 445666667899999999999999999988877
No 240
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=82.59 E-value=3.1 Score=24.02 Aligned_cols=47 Identities=9% Similarity=0.187 Sum_probs=37.8
Q ss_pred EEEeecCCCcHHHhhcccc-------------CCCeeCCCCCcccccccCCCCEEEEEEe
Q 042212 49 ITLEVESSDMIDNASRGSS-------------SPAGNFEDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 49 ~~l~v~~~~tV~~lK~~I~-------------~~gk~L~d~~tL~~y~I~~~sti~l~~r 95 (97)
+.-.++-.+++..||..++ ..+.+|+++.+|.+.+++-...+.+.+-
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 3446777888899998888 3456699999999999998888888764
No 241
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=81.72 E-value=1.4 Score=29.26 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=38.5
Q ss_pred EEEEeecCCCcHHHhhcccc----------------C---CCeeCCC-CCcccccccCCCCEEEEEEe
Q 042212 48 TITLEVESSDMIDNASRGSS----------------S---PAGNFED-GWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~----------------~---~gk~L~d-~~tL~~y~I~~~sti~l~~r 95 (97)
..++.++..+||.++++++. + ....|+| +.||.++++.++..|.+-+|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 35678899999999998887 1 1245665 57999999999999988776
No 242
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=80.17 E-value=6.3 Score=22.54 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=38.1
Q ss_pred cCCeeeEEECCC------C-CEEEEeecCCCcHHHhhcccc--CC--------------Ce--eCCCCCc-ccccccCCC
Q 042212 34 RGRMQIFVKTST------G-KTITLEVESSDMIDNASRGSS--SP--------------AG--NFEDGWT-QADYNIQKE 87 (97)
Q Consensus 34 ~~~m~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~--~~--------------gk--~L~d~~t-L~~y~I~~~ 87 (97)
.++|+|.|+..- | ....+++....||.+|.+.+. |. .. .+-|+.- -.++-+++|
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dG 86 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDG 86 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTT
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCC
Confidence 467888888753 4 466788877889999988876 21 10 1112111 136678899
Q ss_pred CEEEEEE
Q 042212 88 STLHFVL 94 (97)
Q Consensus 88 sti~l~~ 94 (97)
+.|.+..
T Consensus 87 DeV~i~p 93 (98)
T 1vjk_A 87 DVVGVFP 93 (98)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 9988763
No 243
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=77.71 E-value=7.2 Score=21.76 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=35.1
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc-----------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS-----------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~-----------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
+|+|-+++|..+ ++....|+.++=..|. .+|+...-+ +-+++|++|.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~-----~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPID-----YKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTT-----CBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCC-----cccCCCCEEEEE
Confidence 578888999775 4558889999866665 566655443 556788888765
No 244
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.48 E-value=2.1 Score=23.94 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=31.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc----------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS----------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~----------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
|+|.| +|+...+......||.+|-+.+. .||..+..+ ..+++-+++|+.|.++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEEC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEE
Confidence 45555 46654432215678888876654 455544332 3445667888888764
No 245
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=69.23 E-value=2.2 Score=22.73 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=31.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
|+|.| +|+. +++....|+.++.+.+. .+|.....+ ...+.-+++|+.|.++-
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQLDQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 44555 4565 45567789999988876 444443221 12245678888887753
No 246
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=67.93 E-value=1.1 Score=29.48 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=30.5
Q ss_pred HhhccccCCCeeCCCCCcccccccCCCCEEEEEEee
Q 042212 61 NASRGSSSPAGNFEDGWTQADYNIQKESTLHFVLRL 96 (97)
Q Consensus 61 ~lK~~I~~~gk~L~d~~tL~~y~I~~~sti~l~~rl 96 (97)
-+++++.|.|.+++.-+....|||+.+|.|.+.-++
T Consensus 9 ~~~~~i~YDGsqi~slWA~~~fgi~gdSIV~FrG~c 44 (190)
T 2ddz_A 9 IKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKC 44 (190)
T ss_dssp CCSSCCCBCSGGGSTTHHHHHHCCCSSEEEEEEEEE
T ss_pred EcCCccCcChhhhhHHHHHHhcCCCCCeEEEEECcc
Confidence 345677799999999999999999999998876543
No 247
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=65.29 E-value=1.4 Score=26.59 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=42.5
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc------------------CCCeeCCCCCcccccccCCCCEEEEE
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS------------------SPAGNFEDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~------------------~~gk~L~d~~tL~~y~I~~~sti~l~ 93 (97)
.+..|+|...+ ..+++.|..+.-|..+-.++- -+-..+.-..||..|||+.++.+++.
T Consensus 25 WeL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 25 WELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CCEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 34667776654 778888888888887665544 22345688899999999999987764
No 248
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=62.21 E-value=7.7 Score=21.40 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.5
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.+.-+.+ +++.|.++ |..+.+
T Consensus 28 L~~lGl~pG~~v~V~~~~p~~gpi~v~v~---g~~iaL 62 (81)
T 2k5l_A 28 IMDMGITRGCEIYIRKVAPLGDPIQINVR---GYELSL 62 (81)
T ss_dssp HHHHTCCTTCEEEEEEECTTSCCEEEEET---TEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEEC---CEEEEc
Confidence 9999999999999988754 67777773 445444
No 249
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=59.50 E-value=10 Score=21.19 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=25.5
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.+.-+.+ +++.|.+ +|..+.+
T Consensus 31 L~~mGl~pG~~V~V~~~~p~~gpi~v~v---~g~~iaL 65 (86)
T 2k4y_A 31 IMDMGIVRGTEIYIEGKAPMGDPIALRL---RGYSLSL 65 (86)
T ss_dssp HHHHTCCTTCEEEEEEECTTSCSEEEEE---TTEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEE---CCEEEEc
Confidence 9999999999999988764 6777777 3455544
No 250
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=57.75 E-value=11 Score=20.42 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=22.7
Q ss_pred cccccccCCCcceeeeeec-CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR-GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~-~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.+.-+.+ +++.+.+ +|..+.+
T Consensus 31 L~~lGi~~G~~v~v~~~~p~gp~~v~v---~g~~iaL 64 (77)
T 3e19_A 31 LVSMGLTPGATIQVLESHPMGPIIISV---GGVRFAI 64 (77)
T ss_dssp HHTTTCSTTCEEEEEEC--CCCEEEEE---TTEEEEE
T ss_pred HHHCCCCCCCEEEEEEecCCCCEEEEE---CCEEEEe
Confidence 9999999999999988754 4455554 3444444
No 251
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=57.06 E-value=17 Score=20.95 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.8
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
+|.+...+|+..++++.+.+|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 46777889999999999999988654
No 252
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=56.90 E-value=14 Score=19.89 Aligned_cols=43 Identities=0% Similarity=-0.025 Sum_probs=25.4
Q ss_pred EeecCCCcHHHhhcccc--C------CC-eeCCCCCc--ccccccCCCCEEEEEE
Q 042212 51 LEVESSDMIDNASRGSS--S------PA-GNFEDGWT--QADYNIQKESTLHFVL 94 (97)
Q Consensus 51 l~v~~~~tV~~lK~~I~--~------~g-k~L~d~~t--L~~y~I~~~sti~l~~ 94 (97)
+++ ...||.++.+.+. + .+ ...-|+.- =.+.-+++|+.|.+..
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 555 5678999988776 1 11 11122222 2356688999988764
No 253
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=56.78 E-value=17 Score=20.26 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=28.9
Q ss_pred EEeecCCCcHHHhhcccc--C------------CC------eeCCCCCccc-----ccccCCCCEEEEEEe
Q 042212 50 TLEVESSDMIDNASRGSS--S------------PA------GNFEDGWTQA-----DYNIQKESTLHFVLR 95 (97)
Q Consensus 50 ~l~v~~~~tV~~lK~~I~--~------------~g------k~L~d~~tL~-----~y~I~~~sti~l~~r 95 (97)
.++. ...||.++.+.+. | +| ..+-|+.-.. ++-+++|+.|.+...
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 4664 4579999998887 3 22 1223443332 677899999988753
No 254
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=56.77 E-value=24 Score=19.96 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=22.2
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
..+|.+...+|+..++++++.+|+.+.-
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLA 30 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 3567777678988899999999988753
No 255
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=56.47 E-value=15 Score=21.95 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
....+.+=.++|-.++++++.+.|+.++|+.+-
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw 50 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELF 50 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHH
Confidence 335555666789999999999999999999766
No 256
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=56.17 E-value=6.5 Score=21.88 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=25.8
Q ss_pred cccccccCCCcceeeeeec---CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR---GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~---~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.++-+.+ +++.|.++ |..+.+
T Consensus 31 L~~lGl~pG~~v~V~~~~p~g~~pi~v~v~---g~~iaL 66 (85)
T 3mhx_A 31 LRELGFVKGEEVRMVAKGPVGGEPLLVQVG---FTRFAL 66 (85)
T ss_dssp HHHTTCCTTCEEEEEESCSSSCSCEEEEET---TEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCCEEEEEC---CEEEEc
Confidence 9999999999999998864 57777774 444444
No 257
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=54.01 E-value=11 Score=20.21 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=25.7
Q ss_pred cccccccCCCcceeeeee--cCCeeeEEECCCCCEEEEe
Q 042212 16 LADYNIQKESTLHLVARL--RGRMQIFVKTSTGKTITLE 52 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~--~~~m~i~vk~~~g~~~~l~ 52 (97)
|.+.||..|+.+.+.-+. .+++.+.+ .|..+.+.
T Consensus 26 L~~lGl~pG~~v~v~~~~p~~gpi~v~v---~~~~iaL~ 61 (75)
T 2gcx_A 26 LLSLGMLPGSSFHVVRVAPLGDPVHIET---RRVSLVLR 61 (75)
T ss_dssp HTTTTCCSSEEEEECCCCSSCCEEEEEE---TTEEEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEE---CCEEEEcC
Confidence 999999999999988775 35677776 34555553
No 258
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=52.73 E-value=14 Score=23.43 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=22.7
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRG 65 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~ 65 (97)
..|.+.+. .+|+.+.+++++.+|+.+.-..
T Consensus 8 ~~m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 8 QLMRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred CcceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45666663 4799999999999999876544
No 259
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=52.56 E-value=21 Score=20.25 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=26.0
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
..|.|.|..- -++.+.|.+..+..+|.++|.
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~ 34 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVS 34 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHH
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHH
Confidence 3467777765 699999999999999999988
No 260
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=51.74 E-value=8.8 Score=21.45 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=25.7
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.+.-+.+ +++.|.|+ |..+.+
T Consensus 26 L~~mGl~pG~~V~Vi~~ap~ggPi~v~v~---g~~iaL 60 (83)
T 2lx9_A 26 LLSLGMLPGSSFNVVRVAPLGDPIHIETR---RVSLVL 60 (83)
T ss_dssp HHHSSCCSSSEEEEEEECTTTCCEEEECS---SCEEEE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCcEEEEEC---CEEEEc
Confidence 9999999999999998764 67777774 344444
No 261
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=51.34 E-value=26 Score=20.87 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=24.7
Q ss_pred cCCCcceeeeeec-----CCeeeEEECCCCCEEEEeecCC
Q 042212 22 QKESTLHLVARLR-----GRMQIFVKTSTGKTITLEVESS 56 (97)
Q Consensus 22 ~~~s~i~l~~~~~-----~~m~i~vk~~~g~~~~l~v~~~ 56 (97)
++|..|++.+..+ -+..+.|.+++|+++.+.+.+.
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g 43 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPG 43 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTT
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCC
Confidence 3566676666542 2367888999998888888765
No 262
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=50.52 E-value=16 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.9
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTIT 50 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~ 50 (97)
|.+.||..|+.|.++-+.+ +++.|.|+ |..+.
T Consensus 27 L~~lGl~pG~~V~Vv~~~P~ggpi~V~v~---g~~ia 60 (105)
T 2k5f_A 27 LMDLGLVRGAKLKVLRFAPLGDPIEVNCN---GMLLT 60 (105)
T ss_dssp HHHHTCSTTCEEEEEEECSSSCSEEEEET---TEEEE
T ss_pred HHHcCCCCCCEEEEEEECCCCCCEEEEEC---CEEEE
Confidence 9999999999999988753 67777773 44444
No 263
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=49.23 E-value=29 Score=19.87 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.4
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHh
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNA 62 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~l 62 (97)
.+|.+...+|+..++++.+.+|+.+.
T Consensus 7 ~~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 7 ITVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEECCCCCEEEEEECCCChHHHH
Confidence 46777777899889999999998864
No 264
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=46.65 E-value=19 Score=26.84 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=29.4
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
..+.+.|..++|....+.++++.|+.++-+.|.
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~ 247 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLI 247 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHH
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHH
Confidence 458888999999999999999999999988776
No 265
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=45.56 E-value=18 Score=23.05 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=20.7
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRG 65 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~ 65 (97)
|.|.+ +.+|+.+++++++..|+.++-..
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIEL-TINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHH
Confidence 34444 34799999999999998876543
No 266
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=44.46 E-value=7.7 Score=20.77 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.8
Q ss_pred cccccccCCCcceeeeeec--CCeeeEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFV 41 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~v 41 (97)
|.+.||..|+.+.+.-+.+ +++.+.+
T Consensus 27 L~~lGl~~G~~v~v~~~~p~~~p~~v~v 54 (75)
T 2h3j_A 27 LFSMGLLPGAALRVVRIAPLGDPIQVET 54 (75)
T ss_dssp HHHHTCCTTCEEEEEECCTTSCCCEEES
T ss_pred HHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 9999999999999988754 6676666
No 267
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=44.45 E-value=21 Score=18.57 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCCEEEEeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 45 TGKTITLEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 45 ~g~~~~l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
+|+.+. + ...||.++.+.+. .+|.....+ .-.+.-+++|+.|.++-
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred CCEEEE--c-CCCcHHHHHHHcCCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 566554 4 5679999888776 555554322 22345688899988764
No 268
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=43.95 E-value=39 Score=18.48 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=30.5
Q ss_pred CEEEEeecCCCcHHHhhcccc--CCC----------------eeCCCCCc-ccccccCCCCEEEEEE
Q 042212 47 KTITLEVESSDMIDNASRGSS--SPA----------------GNFEDGWT-QADYNIQKESTLHFVL 94 (97)
Q Consensus 47 ~~~~l~v~~~~tV~~lK~~I~--~~g----------------k~L~d~~t-L~~y~I~~~sti~l~~ 94 (97)
....+++....||.++.+.+. |.+ ..+-|+.. =.++-+++|+.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 567788877889999988887 321 11112111 1256688899988764
No 269
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=43.85 E-value=33 Score=20.07 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCeeeEEECCC-------CCEEEEeecCCCcHHHhhcccc--CCCeeCCC--CCcccccccCCCCEEEE
Q 042212 35 GRMQIFVKTST-------GKTITLEVESSDMIDNASRGSS--SPAGNFED--GWTQADYNIQKESTLHF 92 (97)
Q Consensus 35 ~~m~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~I~--~~gk~L~d--~~tL~~y~I~~~sti~l 92 (97)
+.+.|.|...+ +..+.+-|.++.+..+|..+|. ++...-++ ...--.|.=++|+.|.+
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl 72 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVL 72 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEE
Confidence 44666666442 5578999999999999999998 33221111 11223444456665544
No 270
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=43.51 E-value=40 Score=19.31 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=21.0
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHh
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNA 62 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~l 62 (97)
.+|.+...+|+..++++.+.+|+.+.
T Consensus 6 ~~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 6 VNVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCCcHHHH
Confidence 35667667899989999999998865
No 271
>3q1c_A LEE-encoded effector ESPG; VIRA fold, virulence factor, PAK recruitment and activation, activated kinase, signaling protein; 1.60A {Escherichia coli O127} PDB: 4fma_A 4fmd_A* 4fme_A* 4fmc_A* 3pcr_A* 3pcs_A
Probab=43.39 E-value=51 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=32.1
Q ss_pred cccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCC
Q 042212 20 NIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSD 57 (97)
Q Consensus 20 ~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~ 57 (97)
...+||.+.+-++.+.-+.+.|.+++|+.+.+..+.+.
T Consensus 60 ~fsDGSsLrIsVtkSeliE~~I~tpd~~ki~v~LEsne 97 (360)
T 3q1c_A 60 RFSDGSSLRISVTNSESIEAEIRTPDNEKITVLLESNE 97 (360)
T ss_dssp ECTTSCEEEEEEETTCCEEEEEECTTCCEEEEEECCCT
T ss_pred hccCCceEEEEeeccceEEEEEEccCCceeEEecccch
Confidence 45689999999988888999999999999888777654
No 272
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=42.96 E-value=16 Score=21.34 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.1
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+...+|.+|.++|..+.-+++-|.-|+
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~~e 66 (113)
T 1ltr_D 40 ITFKSGATFQVEVPGSQHIDSQKKAIE 66 (113)
T ss_dssp EECTTSCEEEECCCSTTSCSHHHHHHH
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHH
Confidence 446689999999999988887777766
No 273
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=42.94 E-value=21 Score=22.68 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=20.6
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASR 64 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~ 64 (97)
|.|.+ +.+|+.++++++|..|+.++-.
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHHHH
Confidence 45555 3479999999999999887543
No 274
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=42.87 E-value=29 Score=19.83 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=26.1
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.|+|++.. +|..+.+.++++.+..+|.+++.
T Consensus 5 ~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~ 36 (89)
T 1vd2_A 5 SQVRVKAYY-RGDIMITHFEPSISFEGLCNEVR 36 (89)
T ss_dssp SCEEEEEES-SSCEEEEEECTTCCHHHHHHHHH
T ss_pred CeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHH
Confidence 346666644 57899999999999999999998
No 275
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=42.84 E-value=27 Score=19.96 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=25.9
Q ss_pred CCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.|.|.+=. ++..+.+.|.++-+..+|+.+|.
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~ 42 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIA 42 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHH
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHH
Confidence 346666633 46799999999999999999988
No 276
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=42.63 E-value=44 Score=20.28 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=38.6
Q ss_pred CCEEEEeecCCCcHHHhhcccc---------------------CCCeeC--CCCCcccccccCCCCEEEEE
Q 042212 46 GKTITLEVESSDMIDNASRGSS---------------------SPAGNF--EDGWTQADYNIQKESTLHFV 93 (97)
Q Consensus 46 g~~~~l~v~~~~tV~~lK~~I~---------------------~~gk~L--~d~~tL~~y~I~~~sti~l~ 93 (97)
...+.+-+.|.++..++-+.+- -+|+.. +.+++|++-|+.-.|.|.+.
T Consensus 37 cap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 37 CAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 3567889999999998876665 667777 45789999999999888764
No 277
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=42.62 E-value=23 Score=27.31 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.5
Q ss_pred cCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 34 RGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 34 ~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+..|.+.|..++|....+.+++..|+.++-..|.
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~ 294 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALA 294 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHH
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHH
Confidence 3468888999999999999999999999988887
No 278
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=41.72 E-value=22 Score=22.52 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.1
Q ss_pred CCCCEEEEeecCCCcHHHhhcc
Q 042212 44 STGKTITLEVESSDMIDNASRG 65 (97)
Q Consensus 44 ~~g~~~~l~v~~~~tV~~lK~~ 65 (97)
.+|+.+++++++..|+.++-..
T Consensus 10 vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 10 VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp ETTEEEEEEECTTCBHHHHHHH
T ss_pred ECCEEEEEecCCCCcHHHHHHh
Confidence 4799999999999998876443
No 279
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=38.20 E-value=52 Score=19.72 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
.+|.+...+|+..++++.+.+|+.+.-
T Consensus 22 ~~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 22 AKINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred eEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 477787788988899999999988753
No 280
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=37.82 E-value=38 Score=23.25 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCeeeEEECCCCCEEEEeecC--CCcHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVES--SDMIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~--~~tV~~lK~~I~ 67 (97)
+-+.+.|..++|....+++++ +.|+.++-+.+.
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~lg 38 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMR 38 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTSS
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHhC
Confidence 346788999999999999998 999999977665
No 281
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=37.26 E-value=53 Score=18.57 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.7
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNA 62 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~l 62 (97)
+|.+...+|+..++++.+.+|+.+.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLea 26 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQA 26 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3566567888889999999998864
No 282
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=36.93 E-value=26 Score=21.53 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCcccccccCCCCEEEEE
Q 042212 76 GWTQADYNIQKESTLHFV 93 (97)
Q Consensus 76 ~~tL~~y~I~~~sti~l~ 93 (97)
+++|++.|+++|+.+.+.
T Consensus 60 ~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 60 DRTLSEINLGNGSIILFS 77 (127)
T ss_dssp TSBTTTTTCCTTCEEEEE
T ss_pred cCcHHHcCcCCCcEEEEE
Confidence 589999999999988764
No 283
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=35.57 E-value=43 Score=23.10 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.9
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.+.|-..+|.+.++.|++++|+.++=+.+.
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~ 62 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLM 62 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHH
Confidence 344545678999999999999999976665
No 284
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.89 E-value=30 Score=21.71 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=18.8
Q ss_pred CCCCEEEEeecCCCcHHHhhccc
Q 042212 44 STGKTITLEVESSDMIDNASRGS 66 (97)
Q Consensus 44 ~~g~~~~l~v~~~~tV~~lK~~I 66 (97)
.+|+.+++++++..|+.++-...
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHT
T ss_pred ECCEEEEEecCCcCcHHHHHHHc
Confidence 48999999999999998765543
No 285
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=34.67 E-value=63 Score=18.21 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.1
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
+|.+...+|...++++.+.+|+.+.-
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 45666678888889999999988653
No 286
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.67 E-value=9.8 Score=20.77 Aligned_cols=37 Identities=5% Similarity=0.052 Sum_probs=24.5
Q ss_pred EeecCCCcHHHhhcccc---------CCCeeCCCCCcccccccCCCCEEEE
Q 042212 51 LEVESSDMIDNASRGSS---------SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 51 l~v~~~~tV~~lK~~I~---------~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
+++....||.++.+.+. .||+....+ +-+++|+.|.+
T Consensus 25 ~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i 70 (77)
T 1rws_A 25 IEWREGMKVRDILRAVGFNTESAIAKVNGKVVLED-----DEVKDGDFVEV 70 (77)
T ss_dssp CCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSS-----SCCCSSCCCBC
T ss_pred EECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCC-----CCcCCCCEEEE
Confidence 45566789999988876 555555433 45677776654
No 287
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=33.36 E-value=31 Score=19.79 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.5
Q ss_pred EECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 41 VKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 41 vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+...+|.+|.++|..+.-+++-|.-|+
T Consensus 41 isf~ngatfqvevpgsqh~~sqk~~~e 67 (104)
T 3chb_D 41 ITFKNGATFQVEVPGSQHIDSQKKAIE 67 (104)
T ss_dssp EECTTCCEEEECCCCTTSCHHHHHHHH
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHH
Confidence 446689999999999998888887776
No 288
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=32.79 E-value=47 Score=21.44 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=25.3
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.+.+.-+.+ +++.|.+ .|..+.+
T Consensus 167 L~~~Gi~pG~~v~v~~~~p~~gpi~v~v---~g~~iaL 201 (214)
T 3hrs_A 167 LERNGLQVGKTIRFLGYDDFSHLYSLEV---DGQEIQL 201 (214)
T ss_dssp HHTTTCCTTCEEEEEEEETTTTEEEEEE---TTEEEEE
T ss_pred HHHCCCCCCCEEEEEEecCCCCeEEEEE---CCEEEEc
Confidence 9999999999999988764 6677776 3445444
No 289
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=31.75 E-value=51 Score=22.35 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.5
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.|.|-..+|...++.|+++.|+.+|=..+.
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~ 39 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLV 39 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHH
Confidence 445555788999999999999999977666
No 290
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=31.67 E-value=57 Score=18.23 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=21.9
Q ss_pred eEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 39 IFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 39 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
|.+..++++...++|.|..|+.+--.|.-
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaL 32 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKAL 32 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHH
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHH
Confidence 45556788888999999999987554443
No 291
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=31.50 E-value=58 Score=18.09 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
++|.+...++...++++++.+|+.+.-
T Consensus 5 ~~v~~~~~~~~~~~~~~~~g~tlL~a~ 31 (98)
T 1jq4_A 5 HTITAVTEDGESLRFECRSDEDVITAA 31 (98)
T ss_dssp EEEEEEETTTEEEEEEEESCCTHHHHH
T ss_pred EEEEEEecCCCcEEEEeCCCChHHHHH
Confidence 456666666777888999999988653
No 292
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=30.68 E-value=64 Score=17.68 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=18.3
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
+|.+...+| ..++++++.+|+.+.-
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~ 27 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAA 27 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHH
Confidence 466665667 6778889999988753
No 293
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, , structural genomic, structural genomics, PSI-2; NMR {Clostridium thermocellum}
Probab=30.13 E-value=49 Score=20.78 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=42.6
Q ss_pred cccccccCCCcceeeeeec--CCeeeEEECCCCCEEEE--------eecCCC---cHHHhhcc---cc--CCCeeCCCCC
Q 042212 16 LADYNIQKESTLHLVARLR--GRMQIFVKTSTGKTITL--------EVESSD---MIDNASRG---SS--SPAGNFEDGW 77 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~--~~m~i~vk~~~g~~~~l--------~v~~~~---tV~~lK~~---I~--~~gk~L~d~~ 77 (97)
|.+.||..|+.+.+.-+.+ +++.|.++ |..+.+ .|++.. ....++.- |. .+|..+ .+
T Consensus 27 L~~mGl~pG~~V~Vv~~~P~ggpi~v~v~---g~~iaLr~~~A~~I~Ve~~~~~~pL~~~~~G~~~I~~i~g~~~~--~~ 101 (162)
T 2k5i_A 27 LVGMGFVPGEEIEIVQVAPLGDPIVCKIG---NRNITLRKREADLIEVEVVGGELPLILADDGTYEITKLNGGRRF--LF 101 (162)
T ss_dssp HHHHTCCTTCEEEEEEECTTSCCEEEEET---TEEEEECHHHHTTEEEEETTSCEEGGGCCSSEEEEEEECSCHHH--HH
T ss_pred HHHcCCCCCCEEEEEEECCCCCCEEEEEC---CEEEEeChhhcccEEEEEcccceehhhcCCCCEEEEEEeCCHHH--HH
Confidence 9999999999999988764 56777763 444443 122111 11111110 00 112111 25
Q ss_pred cccccccCCCCEEEEE
Q 042212 78 TQADYNIQKESTLHFV 93 (97)
Q Consensus 78 tL~~y~I~~~sti~l~ 93 (97)
.|++.|+.+|++|.++
T Consensus 102 ~L~~lG~~~G~~v~vv 117 (162)
T 2k5i_A 102 RMKNLGIESGKKIQVS 117 (162)
T ss_dssp HHHHHTCSSSCEEEEE
T ss_pred HHHHCCCCCCCEEEEE
Confidence 6888899999988775
No 294
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.63 E-value=65 Score=18.39 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=23.0
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.|.+..++++...++|.|..|+.+--.|..
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaL 38 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKAL 38 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHH
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHH
Confidence 456667788888999999999887554443
No 295
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium cellulans}
Probab=27.50 E-value=72 Score=25.32 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=50.3
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---CCCeeCCCCCcccccccCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
|.-|=+..|+..+++-.+- -=++.|+..+|++++|.+.....- ..-|+ .+||.+.... |..--|.+|.+|.+
T Consensus 675 lGfYPv~pG~~~Y~igsP~-F~~vti~l~~Gk~~~I~a~~~s~~---n~YIqs~~lNGk~~~~~~-i~h~~i~~GG~L~f 749 (774)
T 2xsg_A 675 VGLFPVTAGSSQFQVGSPF-FDSTTITYDDGSAFTVTADGVSED---AFYVQSATLDGATFGNTW-VDYATVVGGADLAF 749 (774)
T ss_dssp HTEECSSTTSSEEEECCCC-SSEEEEECTTSCEEEEEEETCCSS---CCEEEEEEETTEECCCSE-EEHHHHHTTCEEEE
T ss_pred hcCCCCCCCCceEEecCCC-CCeEEEECCCCCEEEEEecCCCCC---CceEEEEEECCEECcCce-ecHHHHcCCCEEEE
Confidence 5666677788887655432 125666667899999988755420 11233 8999997653 66556889999988
Q ss_pred EEe
Q 042212 93 VLR 95 (97)
Q Consensus 93 ~~r 95 (97)
.+.
T Consensus 750 ~mg 752 (774)
T 2xsg_A 750 RMG 752 (774)
T ss_dssp EEE
T ss_pred EEC
Confidence 764
No 296
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=27.19 E-value=76 Score=16.76 Aligned_cols=41 Identities=5% Similarity=0.036 Sum_probs=26.8
Q ss_pred EEEEeecCCCcHHHhhcccc------------------CCCeeCCCCCcccccccCCCCEEEEEE
Q 042212 48 TITLEVESSDMIDNASRGSS------------------SPAGNFEDGWTQADYNIQKESTLHFVL 94 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~------------------~~gk~L~d~~tL~~y~I~~~sti~l~~ 94 (97)
...++ ....||.++.+.+. .||+... .+.-+++|+.|.+..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeC
Confidence 45555 56679998888775 2333332 255688999988764
No 297
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=26.39 E-value=25 Score=22.92 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=24.6
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITL 51 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l 51 (97)
|.+.||..|+.|.+.-..++++.|.++ +|..+.+
T Consensus 184 L~~~Gi~pG~~v~v~~~~~~~~~v~v~--~g~~iaL 217 (230)
T 1fx7_A 184 LKDAGVVPNARVTVETTPGGGVTIVIP--GHENVTL 217 (230)
T ss_dssp HHHTTCCTTCEEEEEECTTSCEEEECT--TSCCEEE
T ss_pred HHHCCCCCCCEEEEEEcCCCeEEEEEC--CCCeEec
Confidence 999999999999988766566666664 2444444
No 298
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.41 E-value=64 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=27.0
Q ss_pred CeeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 36 RMQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 36 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
.+.|-+=.++|-.++++|..+.|++++|+.+-
T Consensus 51 ~v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw 82 (1092)
T 2y3a_A 51 AISVDFLLPTGIYIQLEVPREATISYIKQMLW 82 (1092)
T ss_dssp EEEEEEECTTCCEEEEEEETTCBHHHHHHHHH
T ss_pred ceEEEEECCCceEEEEEecCcccHHHHHHHHH
Confidence 35555566889999999999999999999877
No 299
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=25.16 E-value=72 Score=16.71 Aligned_cols=47 Identities=9% Similarity=-0.110 Sum_probs=27.8
Q ss_pred EEEEeecCCCcHHHhhcccc--C---CCe---eCCCCCcc-cccccCCCCEEEEEE
Q 042212 48 TITLEVESSDMIDNASRGSS--S---PAG---NFEDGWTQ-ADYNIQKESTLHFVL 94 (97)
Q Consensus 48 ~~~l~v~~~~tV~~lK~~I~--~---~gk---~L~d~~tL-~~y~I~~~sti~l~~ 94 (97)
...+++....||.++.+.+. | ++- ..-|+.-. .+.-+++|+.|.+.-
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 45667767789998887765 2 111 11222111 246788999888753
No 300
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=25.00 E-value=74 Score=17.51 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=17.5
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHhh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNAS 63 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~lK 63 (97)
+|.+...+| ..++++++.+|+.+.-
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~ 26 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAA 26 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHH
Confidence 455554555 6778899999988754
No 301
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=24.97 E-value=58 Score=20.37 Aligned_cols=32 Identities=6% Similarity=0.056 Sum_probs=26.0
Q ss_pred CCeeeEEECCCCCEEEEeecCCC---cHHHhhcccc
Q 042212 35 GRMQIFVKTSTGKTITLEVESSD---MIDNASRGSS 67 (97)
Q Consensus 35 ~~m~i~vk~~~g~~~~l~v~~~~---tV~~lK~~I~ 67 (97)
..|+|.+.. +|+++..+...+. |++++.+++-
T Consensus 28 ~~~~I~i~~-~~~~~~a~L~D~~aP~Ta~~f~~~LP 62 (153)
T 2nnz_A 28 VEMRLRIRF-ESAECEVELYEEWAPETVRAIADALP 62 (153)
T ss_dssp SCCCEEEEE-TTEEEEECCCTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEEE-CCEEEEEEEcCCCCHHHHHHHHHhCC
Confidence 358887764 5688888998998 9999998877
No 302
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A* 2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Probab=24.66 E-value=54 Score=25.85 Aligned_cols=75 Identities=7% Similarity=0.096 Sum_probs=49.6
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---CCCeeCCCCCcccccccCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
|.-|=+..|+..+++-.+- -=++.|+..+|++++|....... + ..-|+ .+||.+.... |..--|.+|.+|.+
T Consensus 638 lGfYPv~pg~~~Y~igsP~-F~~v~i~l~~Gk~~~I~a~~~s~-~--n~YIqs~~lNGk~~~~~~-i~h~~i~~GG~L~f 712 (744)
T 2wvx_A 638 LGFYPVCPGTDEYVMGTPL-FKKATLHFENGNSLVIDAPNNST-E--NFYIDSMSFNGADHTKNY-LRHEDLFKGGTIKV 712 (744)
T ss_dssp HTEECSSTTSSEEEECCCS-SSEEEEECTTSCEEEEECTTCCS-S--CCEEEEEEETTEECCCSE-EEHHHHHHCEEEEE
T ss_pred hcCCCCCCCCceEEecCCC-CCeEEEECCCCCEEEEEecCCCC-C--CceEEEEEECCEECcCce-ecHHHHcCCCEEEE
Confidence 5666677788887655432 12566666789999998875542 0 11233 8999987553 55556888888887
Q ss_pred EEe
Q 042212 93 VLR 95 (97)
Q Consensus 93 ~~r 95 (97)
.+.
T Consensus 713 ~mg 715 (744)
T 2wvx_A 713 DMS 715 (744)
T ss_dssp EEE
T ss_pred EeC
Confidence 754
No 303
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase family 92, BT2199; HET: SWA; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvy_A*
Probab=24.08 E-value=54 Score=25.78 Aligned_cols=75 Identities=8% Similarity=0.122 Sum_probs=49.8
Q ss_pred cccccccCCCcceeeeeecCCeeeEEECCCCCEEEEeecCCCcHHHhhcccc---CCCeeCCCCCcccccccCCCCEEEE
Q 042212 16 LADYNIQKESTLHLVARLRGRMQIFVKTSTGKTITLEVESSDMIDNASRGSS---SPAGNFEDGWTQADYNIQKESTLHF 92 (97)
Q Consensus 16 l~~y~i~~~s~i~l~~~~~~~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~---~~gk~L~d~~tL~~y~I~~~sti~l 92 (97)
|.-|=+..|+..+++-.+- -=++.|+..+|++++|....... + ..-|+ .+||.+.... |..--|.+|.+|.+
T Consensus 640 lGfYPv~pg~~~Y~igsP~-F~~v~i~l~~Gk~~~I~a~~~s~-~--n~YIqs~~lNGk~~~~~~-i~h~~i~~GG~L~f 714 (737)
T 2ww2_A 640 MGFYPVCPGMPEYAIGSPL-FKKVTLHLPEGKNFVVSAADNAA-D--RPYIRKALLNGQEFTRNY-LTHDELKQGGELNL 714 (737)
T ss_dssp HTEECSSTTSCEEEECCCS-SSEEEEECGGGCEEEEECTTCCT-T--CCEEEEEEETTEECCCSE-EEHHHHHTCEEEEE
T ss_pred hcCCCCCCCCceEEecCCC-CCeEEEECCCCCEEEEEecCCCC-C--CceEEEEEECCeECccce-ecHHHHcCCCEEEE
Confidence 5666677788887655432 12456666689999998875542 1 11233 8999997653 66666889999988
Q ss_pred EEe
Q 042212 93 VLR 95 (97)
Q Consensus 93 ~~r 95 (97)
.+.
T Consensus 715 ~mg 717 (737)
T 2ww2_A 715 SMD 717 (737)
T ss_dssp EEE
T ss_pred EeC
Confidence 764
No 304
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=23.93 E-value=60 Score=18.29 Aligned_cols=25 Identities=0% Similarity=0.129 Sum_probs=18.4
Q ss_pred eeEEECCCCCEEEEeecCCCcHHHh
Q 042212 38 QIFVKTSTGKTITLEVESSDMIDNA 62 (97)
Q Consensus 38 ~i~vk~~~g~~~~l~v~~~~tV~~l 62 (97)
+|.+...+|+..++++.+.+|+.+.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~a 26 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEV 26 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHH
Confidence 3555556787788899998887754
No 305
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=23.82 E-value=1.1e+02 Score=17.82 Aligned_cols=31 Identities=3% Similarity=-0.016 Sum_probs=24.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
..|.+-.++++...++|.|..|+.+--.|..
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaL 48 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKAL 48 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHH
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHH
Confidence 4667777888888999999999987655544
No 306
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=23.63 E-value=84 Score=20.66 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=25.1
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhcccc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASRGSS 67 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~ 67 (97)
+.+.|-..+|.+.++.|+++.|+.++-+.+.
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~ 65 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLF 65 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHH
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHH
Confidence 4555666789999999999999999877655
No 307
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=23.46 E-value=1.2e+02 Score=19.10 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCCcceeeeeec-----CCeeeEEECCCCCEEEEeecC
Q 042212 23 KESTLHLVARLR-----GRMQIFVKTSTGKTITLEVES 55 (97)
Q Consensus 23 ~~s~i~l~~~~~-----~~m~i~vk~~~g~~~~l~v~~ 55 (97)
+|..|++.+..+ -+..+.|.+++|+.+.+.+.+
T Consensus 91 ~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~ 128 (180)
T 2q2g_A 91 DDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKE 128 (180)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECS
T ss_pred cCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCC
Confidence 455555554432 236888999999877777654
No 308
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=23.22 E-value=97 Score=17.34 Aligned_cols=48 Identities=6% Similarity=0.151 Sum_probs=30.7
Q ss_pred CEEEEeec--CCCcHHHhhcccc--CCC--e----------------eCCCCCc---c--cccccCCCCEEEEEE
Q 042212 47 KTITLEVE--SSDMIDNASRGSS--SPA--G----------------NFEDGWT---Q--ADYNIQKESTLHFVL 94 (97)
Q Consensus 47 ~~~~l~v~--~~~tV~~lK~~I~--~~g--k----------------~L~d~~t---L--~~y~I~~~sti~l~~ 94 (97)
+..++++. ...||+++.+.+. |.+ . .+-|+.- + .++-+++|+.|.+..
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 45666766 6789999998887 532 1 1222221 1 356789999988764
No 309
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=23.14 E-value=77 Score=19.80 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCeeC-CCCCcccccccCCCCEEEEEEe
Q 042212 68 SPAGNF-EDGWTQADYNIQKESTLHFVLR 95 (97)
Q Consensus 68 ~~gk~L-~d~~tL~~y~I~~~sti~l~~r 95 (97)
+.|+.- +|++||++.+..-|+-|.+.+-
T Consensus 110 ~~g~~~~dd~kTL~~~rF~iGDyidvaI~ 138 (143)
T 4a6q_A 110 MSGRKGTDDSMTLQSQKFQIGDYLDIAIT 138 (143)
T ss_dssp ETTBCCTTTTCBTGGGTCCTTCEEEEEEE
T ss_pred ecCCCCCcccccHHHCCCcCCCEEEEEEe
Confidence 344443 6789999999999999998764
No 310
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=22.94 E-value=1.2e+02 Score=19.12 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=21.3
Q ss_pred CCCcceeeeeec-----CCeeeEEECCCCCEEEEeecC
Q 042212 23 KESTLHLVARLR-----GRMQIFVKTSTGKTITLEVES 55 (97)
Q Consensus 23 ~~s~i~l~~~~~-----~~m~i~vk~~~g~~~~l~v~~ 55 (97)
+|..|++.+..+ -+..+.|.+++|+.+.+.+.+
T Consensus 91 ~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~ 128 (181)
T 3agx_A 91 DGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKD 128 (181)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECS
T ss_pred eCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCC
Confidence 345555544432 136888999999877777753
No 311
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=21.05 E-value=1.2e+02 Score=18.81 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=21.6
Q ss_pred CCCcceeeeeec-----CCeeeEEECCCCCEEEEeecC
Q 042212 23 KESTLHLVARLR-----GRMQIFVKTSTGKTITLEVES 55 (97)
Q Consensus 23 ~~s~i~l~~~~~-----~~m~i~vk~~~g~~~~l~v~~ 55 (97)
+|..|++.+..+ -+..+.|.+++|+.+.+.+.+
T Consensus 85 ~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~~ 122 (170)
T 1c3g_A 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ 122 (170)
T ss_dssp ETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESS
T ss_pred eCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECCC
Confidence 355555554332 136888999999877887764
No 312
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=20.80 E-value=1.1e+02 Score=17.05 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=22.5
Q ss_pred eeeEEECCCCCEEEEeecCCCcHHHhhc
Q 042212 37 MQIFVKTSTGKTITLEVESSDMIDNASR 64 (97)
Q Consensus 37 m~i~vk~~~g~~~~l~v~~~~tV~~lK~ 64 (97)
-.+.|++.+|..+.+.+.+.-..+.||.
T Consensus 31 ~~~iVkss~g~~~~V~v~~~Vd~~~Lkp 58 (85)
T 3h43_A 31 RKVVVKSSTGPSFLVNVSHFVNPDDLAP 58 (85)
T ss_dssp TEEEEEETTSSEEEEEBCTTSCGGGCCT
T ss_pred CEEEEEeCCCCeEEEEecCccCHHHCCC
Confidence 4678888899999999998877777763
Done!