BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042214
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P39736|BX42_DROME Puff-specific protein Bx42 OS=Drosophila melanogaster GN=Bx42 PE=1
SV=1
Length = 547
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 6 AARGGEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYG 65
+A GE +DQRLFN KGMDSG+ D+ YNVYDK + + +YRP K AD D YG
Sbjct: 410 SAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSNTLGAHIYRPSKQADSDNYG 469
Query: 66 GNADEQMEKIMKTDRFKPDKGFAGSSER--SGPRDRPVEFEKEAEEADPFGLDEFLTEVE 123
G+ D I+ T RF PDK F+G+S+ +G R PVEFEK E DPFGLD+FL +
Sbjct: 470 GDLDA----IVNTKRFVPDKQFSGASKEAAAGQRSGPVEFEK---EEDPFGLDQFLNMAK 522
Query: 124 KGGKKALDK 132
K K+A +K
Sbjct: 523 KAPKRAEEK 531
>sp|Q5R7R9|SNW1_PONAB SNW domain-containing protein 1 OS=Pongo abelii GN=SNW1 PE=2 SV=1
Length = 536
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 11/120 (9%)
Query: 9 GGEVTYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGG 66
EV YDQRLFNQ KGMDSGFA D+ YNVYD+ + ++YRP K+ D DMYG
Sbjct: 402 SNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGD 461
Query: 67 NADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVEKGG 126
+ +E +KT+RF PDK F+GS R R+ PV+FE+ DPFGLD+FL E ++ G
Sbjct: 462 D----LEARIKTNRFVPDKEFSGSDRRQRGREGPVQFEE-----DPFGLDKFLEEAKQHG 512
>sp|Q13573|SNW1_HUMAN SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1
Length = 536
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 77/120 (64%), Gaps = 11/120 (9%)
Query: 9 GGEVTYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGG 66
EV YDQRLFNQ KGMDSGFA D+ YNVYD+ + ++YRP K+ D DMYG
Sbjct: 402 SNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGD 461
Query: 67 NADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVEKGG 126
+ +E +KT+RF PDK F+GS R R+ PV+FE+ DPFGLD+FL E ++ G
Sbjct: 462 D----LEARIKTNRFVPDKEFSGSDRRQRGREGPVQFEE-----DPFGLDKFLEEAKQHG 512
>sp|Q1JQE0|SNW1_BOVIN SNW domain-containing protein 1 OS=Bos taurus GN=SNW1 PE=2 SV=1
Length = 536
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 76/120 (63%), Gaps = 11/120 (9%)
Query: 9 GGEVTYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGG 66
EV YDQRLFNQ KGMDSGFA D+ YNVYD+ + +YRP K+ D DMYG
Sbjct: 402 SNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQNIYRPSKNLDKDMYGD 461
Query: 67 NADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVEKGG 126
+ +E +KT+RF PDK F+GS R R+ PV+FE+ DPFGLD+FL E ++ G
Sbjct: 462 D----LEARIKTNRFVPDKEFSGSDRRQRGREGPVQFEE-----DPFGLDKFLEEAKQHG 512
>sp|Q9CSN1|SNW1_MOUSE SNW domain-containing protein 1 OS=Mus musculus GN=Snw1 PE=1 SV=3
Length = 536
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 11/120 (9%)
Query: 9 GGEVTYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGG 66
EV YDQRLFNQ KGMDSGFA D+ YNVYD+ + ++YRP K+ D DMYG
Sbjct: 402 SNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGD 461
Query: 67 NADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVEKGG 126
+ +E +KT+RF PDK F+GS + R+ PV+FE+ DPFGLD+FL E ++ G
Sbjct: 462 D----LEARIKTNRFVPDKEFSGSDRKQRGREGPVQFEE-----DPFGLDKFLEEAKQHG 512
>sp|Q4WEH7|PRP45_ASPFU Pre-mRNA-processing protein 45 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=prp45
PE=3 SV=1
Length = 579
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 11/121 (9%)
Query: 10 GEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNAD 69
E +D RLFNQ G+ SGF D N YDK LF AQ ++++YRP+ D D G A+
Sbjct: 441 SESMWDSRLFNQTSGLQSGFNED---NPYDKPLFAAQDAINSIYRPRAQLDVDDEEG-AE 496
Query: 70 EQMEKIMKTDRF----KPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVEKG 125
+M KI KT+RF K +GF G++E RD PV+FEK+ DPFG+D + +V G
Sbjct: 497 GEMSKIQKTNRFEVLGKAKEGFRGAAEAEA-RDGPVQFEKDT--TDPFGIDSMIADVTGG 553
Query: 126 G 126
Sbjct: 554 A 554
>sp|Q5AU50|PRP45_EMENI Pre-mRNA-processing protein 45 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp45
PE=3 SV=1
Length = 583
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 19/127 (14%)
Query: 8 RGGEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDAD-DDMYGG 66
+ E +D RLFNQ G+ +GF D N YDK LF AQ ++++YRPK AD DD
Sbjct: 439 QSSETMWDSRLFNQTSGLSTGFNED---NPYDKPLFAAQDAINSIYRPKPQADFDD--EA 493
Query: 67 NADEQMEKIMKTDRF----KPDKGFAGSS---ERSGPRDRPVEFEKEAEEADPFGLDEFL 119
+A+ +M KI K++RF + +GF G++ ERSG PV+FEK+ ADPFG+D +
Sbjct: 494 DAEGEMSKIQKSNRFEVLGRAKEGFRGAADAEERSG----PVQFEKDT--ADPFGIDSMI 547
Query: 120 TEVEKGG 126
+V G
Sbjct: 548 ADVTGGA 554
>sp|P0CR56|PRP45_CRYNJ Pre-mRNA-processing protein 45 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=PRP45 PE=3 SV=1
Length = 594
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Query: 11 EVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDA-DDDMYGGNAD 69
E D RLFN+E + +GFA++D YN+YDK LF + +YRP + +D+ +GG +
Sbjct: 454 ETLLDSRLFNRE-ALSTGFASEDSYNLYDKPLFAGSSAAAAIYRPAGSSRNDESFGGGTE 512
Query: 70 EQMEKIMKTDRFK---PDKGFAGSSERSGPRDRPVEFEKEAE-----EADPFGLDEFLTE 121
E +++ M DRF+ +GF G +E R+ PV+FEK+ ADPFG+++F+
Sbjct: 513 EGIKEEMSKDRFQLGNATRGFEG-AEGVEAREGPVQFEKDTIVALDGSADPFGVEQFMDA 571
Query: 122 VEKGGKK 128
+GGK+
Sbjct: 572 ARRGGKR 578
>sp|P0CR57|PRP45_CRYNB Pre-mRNA-processing protein 45 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=PRP45 PE=3
SV=1
Length = 594
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Query: 11 EVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDA-DDDMYGGNAD 69
E D RLFN+E + +GFA++D YN+YDK LF + +YRP + +D+ +GG +
Sbjct: 454 ETLLDSRLFNRE-ALSTGFASEDSYNLYDKPLFAGSSAAAAIYRPAGSSRNDESFGGGTE 512
Query: 70 EQMEKIMKTDRFK---PDKGFAGSSERSGPRDRPVEFEKEAE-----EADPFGLDEFLTE 121
E +++ M DRF+ +GF G +E R+ PV+FEK+ ADPFG+++F+
Sbjct: 513 EGIKEEMSKDRFQLGNATRGFEG-AEGVEAREGPVQFEKDTIVALDGSADPFGVEQFMDA 571
Query: 122 VEKGGKK 128
+GGK+
Sbjct: 572 ARRGGKR 578
>sp|Q22836|YGH1_CAEEL Uncharacterized protein T27F2.1 OS=Caenorhabditis elegans
GN=T27F2.1 PE=1 SV=1
Length = 535
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 13/122 (10%)
Query: 1 MASTGAARGGEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDAD 60
+ T R GE +DQRLF++ +G+DSG DD YN YD +YRP K+ D
Sbjct: 399 LPDTNQKRTGEPQFDQRLFDKTQGLDSGAMDDDTYNPYDAAWRGGDSVQQHVYRPSKNLD 458
Query: 61 DDMYGGNADEQMEKIMKTDRFKPDKGFA---GSSERSGPRDRPVEFEKEAEEADPFGLDE 117
+D+YGG+ D+ +E + +RF DKGF+ GSS SG PV+FEK + D FGL
Sbjct: 459 NDVYGGDLDKIIE---QKNRFVADKGFSGAEGSSRGSG----PVQFEK---DQDVFGLSS 508
Query: 118 FL 119
Sbjct: 509 LF 510
>sp|P54705|SNWA_DICDI Protein snwA OS=Dictyostelium discoideum GN=snwA PE=1 SV=1
Length = 685
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 22/131 (16%)
Query: 1 MASTGAARGGEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDAD 60
+ R + YDQRLFNQ + + SGF DD YNVY K LF + +++YRPK + +
Sbjct: 560 LGQASIKRTEDSIYDQRLFNQSESLTSGFGNDDSYNVYSKPLFGGAVS-NSIYRPKSNQE 618
Query: 61 DDMYGGNADEQMEKIMKTDRF------------KPDKGFAGSSERSGPRDRPVEFEKEAE 108
D+ ++ ++ RF +P+K F+G ++RS R PV FEKE +
Sbjct: 619 DNT-------SIQDVLSNSRFGKEGGSGSGGVPRPNKEFSG-TDRSKDRTGPVAFEKEKK 670
Query: 109 EA-DPFGLDEF 118
++ DPFG D+F
Sbjct: 671 KSDDPFGFDDF 681
>sp|Q09882|PRP45_SCHPO Pre-mRNA-processing protein 45 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp45 PE=1 SV=1
Length = 557
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 15 DQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEK 74
D RLFNQ G+ SGF +D YNVYDK + A P+ STLYRP + +A ++E+
Sbjct: 448 DSRLFNQASGLGSGFQDEDSYNVYDKP-WRAAPS-STLYRPGATLSRQV---DASAELER 502
Query: 75 IMKTDRF----KPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEV 122
I R+ K F GS E R PV FEK+ ADPFG+D FL V
Sbjct: 503 ITSESRYDVLGNAHKKFKGSDEVVESRAGPVTFEKDI--ADPFGVDTFLNNV 552
>sp|Q4PB95|PRP45_USTMA Pre-mRNA-processing protein 45 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=PRP45 PE=3 SV=1
Length = 638
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 15/135 (11%)
Query: 11 EVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYR--PKKDADDDMYGGNA 68
E D RLFNQ + + +G+ +D YN+YDK LF+ + +YR + +D+Y G
Sbjct: 491 ESMTDSRLFNQGESLAAGYGDEDSYNLYDKPLFSGSSAAAAIYRRPAARGGANDIYSGAD 550
Query: 69 DEQMEKIM-KTDRF----KPDKGFAGSSER-----SGP-RDRPVEFEKEAEEADPFGLDE 117
D +E+ + K DRF +G G ++R S P R PV+FEK+ +DPF +++
Sbjct: 551 DTALEEELGKNDRFGLGQSKFRGVQGDADRDSGSGSAPVRSGPVQFEKDT--SDPFAINQ 608
Query: 118 FLTEVEKGGKKALDK 132
FL + ++G K+ D+
Sbjct: 609 FLEDAKRGIKRTSDQ 623
>sp|Q6CC77|PRP45_YARLI Pre-mRNA-processing protein 45 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PRP45 PE=3 SV=1
Length = 568
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 9 GGEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNA 68
GE +D RLF++ + GF +DQY YDK LF+AQ + ++YRP D A
Sbjct: 475 AGEAQFDSRLFSKSGSLQRGF-NEDQY--YDKSLFSAQEAVQSIYRPSASGD-----SVA 526
Query: 69 DEQMEKIMKTDRF----KPDKGFAGS--SERSGP 96
++ ++++ RF K KGF G+ ER GP
Sbjct: 527 EDTIDRLETEKRFDVLGKAGKGFEGADGEERDGP 560
>sp|Q8YG99|AMPA_BRUME Probable cytosol aminopeptidase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=pepA PE=3 SV=1
Length = 485
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 100 PVEFEKEAEEADPFGLDEFLTEVEKGGKKALDKVGTGGTMRASAGS 145
PVEF +EAE+ + G+ +VE G+K L K+G G + + GS
Sbjct: 185 PVEFAEEAEKLEKLGV-----KVEVLGEKELKKLGMGALLGVAQGS 225
>sp|A4VYF9|RECF_STRSY DNA replication and repair protein RecF OS=Streptococcus suis
(strain 05ZYH33) GN=recF PE=3 SV=1
Length = 364
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 92 ERSGPRDR-PVEFEKEAEEADPFGL-DEFLTEVEKGGKKALDKVGTG-GTMR---ASAGS 145
E SG R+ +E++ E D L D+FLTE+EK K+ L K TG G R A +
Sbjct: 210 EISGNREELTIEYQTSIELTDDVNLIDKFLTELEKSRKRDLFKKNTGVGPHRDDVAFFIN 269
Query: 146 SMRDDYGGSGRSR 158
M Y G+ R
Sbjct: 270 GMNAHYASQGQHR 282
>sp|A4W4P9|RECF_STRS2 DNA replication and repair protein RecF OS=Streptococcus suis
(strain 98HAH33) GN=recF PE=3 SV=1
Length = 364
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 92 ERSGPRDR-PVEFEKEAEEADPFGL-DEFLTEVEKGGKKALDKVGTG-GTMR---ASAGS 145
E SG R+ +E++ E D L D+FLTE+EK K+ L K TG G R A +
Sbjct: 210 EISGNREELTIEYQTSIELTDDVNLIDKFLTELEKSRKRDLFKKNTGVGPHRDDVAFFIN 269
Query: 146 SMRDDYGGSGRSR 158
M Y G+ R
Sbjct: 270 GMNAHYASQGQHR 282
>sp|A5VPM3|AMPA_BRUO2 Probable cytosol aminopeptidase OS=Brucella ovis (strain ATCC 25840
/ 63/290 / NCTC 10512) GN=pepA PE=3 SV=1
Length = 497
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 100 PVEFEKEAEEADPFGLDEFLTEVEKGGKKALDKVGTGGTMRASAGS 145
PVEF +EAE+ + G+ +VE G+K L K+G G + + GS
Sbjct: 197 PVEFAEEAEKLEKLGV-----KVEVLGEKELKKLGMGALLGVAQGS 237
>sp|Q8G1M4|AMPA_BRUSU Probable cytosol aminopeptidase OS=Brucella suis biovar 1 (strain
1330) GN=pepA PE=3 SV=1
Length = 497
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 100 PVEFEKEAEEADPFGLDEFLTEVEKGGKKALDKVGTGGTMRASAGS 145
PVEF +EAE+ + G+ +VE G+K L K+G G + + GS
Sbjct: 197 PVEFAEEAEKLEKLGV-----KVEVLGEKELKKLGMGALLGVAQGS 237
>sp|Q96SU4|OSBL9_HUMAN Oxysterol-binding protein-related protein 9 OS=Homo sapiens
GN=OSBPL9 PE=1 SV=2
Length = 736
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 21 QEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKI 75
Q +G+DSGF Q +DK L A L L K DD + DEQ +KI
Sbjct: 104 QLQGLDSGFVPSVQD--FDKKLTEADAYLQILIEQLKLFDDKLQNCKEDEQRKKI 156
>sp|Q5R9W4|OSBL9_PONAB Oxysterol-binding protein-related protein 9 OS=Pongo abelii
GN=OSBPL9 PE=2 SV=1
Length = 736
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 21 QEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKI 75
Q +G+DSGF Q +DK L A L L K DD + DEQ +KI
Sbjct: 104 QLQGLDSGFVPSVQD--FDKKLTEADAYLQILIEQLKLFDDKLQNCKEDEQRKKI 156
>sp|A6X259|AMPA_OCHA4 Probable cytosol aminopeptidase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=pepA PE=3 SV=1
Length = 498
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 100 PVEFEKEAEEADPFGLDEFLTEVEKGGKKALDKVGTGGTMRASAGS 145
PVEF +EAE+ + G+ ++E G+K + K+G G + + GS
Sbjct: 198 PVEFAQEAEKLEKLGV-----KIEVLGEKEMKKLGMGALLGVAQGS 238
>sp|Q8UGC8|AMPA_AGRT5 Probable cytosol aminopeptidase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=pepA PE=3 SV=2
Length = 497
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 100 PVEFEKEAEEADPFGLDEFLTEVEKGGKKALDKVGTGGTMRASAGSS 146
PVEF ++AEE G+D VE G+K L K+G + + GS+
Sbjct: 197 PVEFAEKAEELRKLGVD-----VEILGEKELKKLGMNALLGVAQGSA 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,701,045
Number of Sequences: 539616
Number of extensions: 3220649
Number of successful extensions: 6577
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 6502
Number of HSP's gapped (non-prelim): 76
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)