Query 042214
Match_columns 165
No_of_seqs 124 out of 173
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k98_A MSI-594; LPS, trnoe, an 22.0 23 0.0008 20.1 0.4 12 114-125 1-12 (26)
2 3v1a_A Computational design, M 14.5 72 0.0025 20.6 1.5 14 113-126 11-24 (48)
3 2jek_A RV1873; structural geno 10.1 1.3E+02 0.0044 23.4 1.9 12 109-120 4-15 (145)
4 1z7l_A Ubiquitin-activating en 9.4 1.3E+02 0.0044 25.0 1.8 23 96-121 227-249 (276)
5 2i2j_A Signaling peptide UA159 7.6 73 0.0025 18.0 -0.3 6 17-22 9-14 (26)
6 1p65_A Nucleocapsid protein; v 6.8 1E+02 0.0034 21.5 -0.0 10 16-25 30-39 (73)
7 2lr2_A Immunoglobulin G-bindin 6.1 3.4E+02 0.012 19.3 2.5 26 95-124 55-80 (88)
8 3thg_A Ribulose bisphosphate c 5.5 2.8E+02 0.0094 20.6 1.8 21 96-121 74-94 (107)
9 2jya_A AGR_C_3324P, uncharacte 5.5 1.6E+02 0.0053 21.7 0.4 12 48-59 4-15 (106)
10 2kss_A Carotenogenesis protein 5.4 1.3E+02 0.0045 21.9 -0.1 30 8-45 49-78 (106)
No 1
>2k98_A MSI-594; LPS, trnoe, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=22.00 E-value=23 Score=20.11 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=9.8
Q ss_pred hhhHHHHHHHhc
Q 042214 114 GLDEFLTEVEKG 125 (165)
Q Consensus 114 Gld~fL~~aKk~ 125 (165)
|+.+||..||+|
T Consensus 1 gigkflkkakkg 12 (26)
T 2k98_A 1 GIGKFLKKAKKG 12 (26)
T ss_dssp CHHHHHHHTTSC
T ss_pred ChhHHHHHHHhh
Confidence 577899999884
No 2
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=14.52 E-value=72 Score=20.56 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=11.9
Q ss_pred chhhHHHHHHHhcC
Q 042214 113 FGLDEFLTEVEKGG 126 (165)
Q Consensus 113 FGld~fL~~aKk~~ 126 (165)
|-|..||.+||+.+
T Consensus 11 ~~I~~~I~qAk~~r 24 (48)
T 3v1a_A 11 KNIHSFIHQAKAAG 24 (48)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 78999999999843
No 3
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=10.11 E-value=1.3e+02 Score=23.44 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=8.4
Q ss_pred cCCCchhhHHHH
Q 042214 109 EADPFGLDEFLT 120 (165)
Q Consensus 109 ~~DpFGld~fL~ 120 (165)
+.|||.|+.|++
T Consensus 4 ~~d~~~L~RFv~ 15 (145)
T 2jek_A 4 ASDPFDLKRFVY 15 (145)
T ss_dssp --CTTCTHHHHH
T ss_pred CCCcccHHHHHH
Confidence 468999998864
No 4
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=9.35 E-value=1.3e+02 Score=25.03 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=14.2
Q ss_pred CCCCCeeeecccccCCCchhhHHHHH
Q 042214 96 PRDRPVEFEKEAEEADPFGLDEFLTE 121 (165)
Q Consensus 96 ~R~gPVqFEKd~~~~DpFGld~fL~~ 121 (165)
.+..|++||||. ++-|-|| |+.-
T Consensus 227 ~~~~pl~FeKDD--d~N~hmd-FItA 249 (276)
T 1z7l_A 227 FKMYPIDFEKDD--DSNFHMD-FIVA 249 (276)
T ss_dssp CCCCCCCCCSSC--TTSSHHH-HHHH
T ss_pred ccCCCcceecCC--CcccHHH-HHHH
Confidence 356799999982 3345554 4443
No 5
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=7.57 E-value=73 Score=18.04 Aligned_cols=6 Identities=67% Similarity=1.176 Sum_probs=3.8
Q ss_pred hhcccc
Q 042214 17 RLFNQE 22 (165)
Q Consensus 17 RLFNQs 22 (165)
||||.+
T Consensus 9 rlfnrs 14 (26)
T 2i2j_A 9 RLFNRS 14 (26)
T ss_pred HHHhHH
Confidence 677753
No 6
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=6.80 E-value=1e+02 Score=21.46 Aligned_cols=10 Identities=50% Similarity=0.654 Sum_probs=7.5
Q ss_pred hhhccccCCC
Q 042214 16 QRLFNQEKGM 25 (165)
Q Consensus 16 sRLFNQs~G~ 25 (165)
|-+|||.+|.
T Consensus 30 qTafNQGaGt 39 (73)
T 1p65_A 30 QTAFNQGAGT 39 (73)
T ss_dssp HHHHHHTCSE
T ss_pred HHHHhCCCce
Confidence 4679998774
No 7
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=6.07 E-value=3.4e+02 Score=19.33 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCCCCCeeeecccccCCCchhhHHHHHHHh
Q 042214 95 GPRDRPVEFEKEAEEADPFGLDEFLTEVEK 124 (165)
Q Consensus 95 ~~R~gPVqFEKd~~~~DpFGld~fL~~aKk 124 (165)
+.|.|=+|--|+ ||---..+|.||||
T Consensus 55 eq~ngfiqslkd----dpSqSanlLaEAKK 80 (88)
T 2lr2_A 55 TNNDGAYEGDEL----SGSQSANLLAEAKK 80 (88)
T ss_dssp TTCSSSCCGGGS----CCSCHHHHHHHHHH
T ss_pred hhcccchhcccc----ccchhHHHHHHHHH
Confidence 468888888775 99999999999998
No 8
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=5.52 E-value=2.8e+02 Score=20.55 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.1
Q ss_pred CCCCCeeeecccccCCCchhhHHHHH
Q 042214 96 PRDRPVEFEKEAEEADPFGLDEFLTE 121 (165)
Q Consensus 96 ~R~gPVqFEKd~~~~DpFGld~fL~~ 121 (165)
.+++|.+|++. -|-|+.+|..
T Consensus 74 s~e~~P~F~~P-----~~tl~~Lle~ 94 (107)
T 3thg_A 74 SKEGPPSFEQP-----KMTIDKLLGY 94 (107)
T ss_dssp CCCCCCCCCCC-----CCCHHHHHHH
T ss_pred CCCCCCCCCCC-----cCCHHHHHHH
Confidence 57889999986 3888888874
No 9
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=5.51 E-value=1.6e+02 Score=21.67 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.3
Q ss_pred cccccccCCCCC
Q 042214 48 TLSTLYRPKKDA 59 (165)
Q Consensus 48 a~~sIYRP~~~~ 59 (165)
+...||+|.++.
T Consensus 4 m~arIy~Pak~a 15 (106)
T 2jya_A 4 MSAKIYRPAKTA 15 (106)
T ss_dssp CEEEEECCSSCC
T ss_pred cEEEEeCCCCCc
Confidence 345899999984
No 10
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=5.35 E-value=1.3e+02 Score=21.94 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCCCccchhhhccccCCCCCCCCCCCccccccccccCC
Q 042214 8 RGGEVTYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTA 45 (165)
Q Consensus 8 ~s~E~~yDsRLFNQs~G~dSGFg~Dd~YNVYDKPLF~~ 45 (165)
.|.|...|+|+..|+ |+--+. |||.||..-
T Consensus 49 ~s~~~si~~rflg~s-givv~l-------vfddp~~qy 78 (106)
T 2kss_A 49 HSEDGTISQRFLGQT-GIVVGL-------VFDDPATQY 78 (106)
T ss_dssp SCSSSCCCTTTTTCE-EEEEEC-------CCCCCTTCS
T ss_pred cccCCccChhhcCcc-ceEEEE-------EeCCchhhC
Confidence 477888999999995 454443 677777654
Done!