Query 042214
Match_columns 165
No_of_seqs 124 out of 173
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 06:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042214.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042214hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jeka1 a.255.1.1 (A:6-145) Hy 18.2 26 0.0019 25.4 1.9 10 111-120 1-10 (140)
2 d1bwva1 c.1.14.1 (A:150-478) R 10.2 39 0.0029 26.9 1.0 22 35-62 13-34 (328)
3 d1wdda1 c.1.14.1 (A:151-475) R 8.0 55 0.004 26.0 1.0 21 35-61 12-32 (325)
4 d1p65a_ d.254.1.1 (A:) Arteriv 7.5 41 0.003 20.8 -0.0 10 16-25 19-28 (57)
5 d1gwya_ b.97.1.1 (A:) Sticholy 6.9 38 0.0028 25.4 -0.5 22 34-61 107-128 (175)
6 d1cmra_ g.3.7.2 (A:) Charybdot 6.3 73 0.0053 17.3 0.7 11 15-25 11-21 (31)
7 d3cu0a1 c.68.1.7 (A:75-335) 1, 5.8 48 0.0035 26.0 -0.5 15 29-45 118-132 (261)
8 d1v82a_ c.68.1.7 (A:) Beta-1,3 5.4 52 0.0038 25.6 -0.5 15 29-45 111-125 (252)
9 d1t6t1_ c.136.1.1 (1:) Hypothe 5.4 1.4E+02 0.01 19.4 1.8 17 112-128 1-17 (108)
10 d1iaza_ b.97.1.1 (A:) Equinato 5.2 59 0.0043 24.2 -0.3 22 34-61 105-126 (175)
No 1
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.22 E-value=26 Score=25.37 Aligned_cols=10 Identities=50% Similarity=1.039 Sum_probs=7.5
Q ss_pred CCchhhHHHH
Q 042214 111 DPFGLDEFLT 120 (165)
Q Consensus 111 DpFGld~fL~ 120 (165)
|||.|..|++
T Consensus 1 Dp~~L~RFv~ 10 (140)
T d2jeka1 1 DPFDLKRFVY 10 (140)
T ss_dssp CTTCTHHHHH
T ss_pred CcchHHHHHH
Confidence 7888888843
No 2
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=10.24 E-value=39 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=17.1
Q ss_pred cccccccccCCCccccccccCCCCCCcc
Q 042214 35 YNVYDKGLFTAQPTLSTLYRPKKDADDD 62 (165)
Q Consensus 35 YNVYDKPLF~~~~a~~sIYRP~~~~d~d 62 (165)
-+|||.||+ .+|.||+-.+..+
T Consensus 13 lgv~~RPL~------~tiiKP~~Glsp~ 34 (328)
T d1bwva1 13 LDKFGRPLL------GCTTKPKLGLSGK 34 (328)
T ss_dssp HTCCSSCEE------ECBCSSSSCCCHH
T ss_pred hCCCCCCeE------EeeeCCCCCCCHH
Confidence 479999998 4899998666533
No 3
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=7.96 E-value=55 Score=25.99 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.5
Q ss_pred cccccccccCCCccccccccCCCCCCc
Q 042214 35 YNVYDKGLFTAQPTLSTLYRPKKDADD 61 (165)
Q Consensus 35 YNVYDKPLF~~~~a~~sIYRP~~~~d~ 61 (165)
-+|||+||+ .+|-||+-.+..
T Consensus 12 lgv~~RPLl------gtiiKP~~Glsp 32 (325)
T d1wdda1 12 LNKYGRPLL------GCTIKPKLGLSA 32 (325)
T ss_dssp HTCCSSCEE------ECBCSSSSCCCH
T ss_pred hCCCCCCeE------EeecCCCCCCCH
Confidence 369999998 489999866543
No 4
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=7.52 E-value=41 Score=20.84 Aligned_cols=10 Identities=50% Similarity=0.654 Sum_probs=7.5
Q ss_pred hhhccccCCC
Q 042214 16 QRLFNQEKGM 25 (165)
Q Consensus 16 sRLFNQs~G~ 25 (165)
+-+|||.+|.
T Consensus 19 qtafNQGaG~ 28 (57)
T d1p65a_ 19 QTAFNQGAGT 28 (57)
T ss_dssp HHHHHHTCSE
T ss_pred HHHHhCCCce
Confidence 4579998874
No 5
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]}
Probab=6.87 E-value=38 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=17.0
Q ss_pred ccccccccccCCCccccccccCCCCCCc
Q 042214 34 QYNVYDKGLFTAQPTLSTLYRPKKDADD 61 (165)
Q Consensus 34 ~YNVYDKPLF~~~~a~~sIYRP~~~~d~ 61 (165)
.||+|.. ||+ -.||++++..|.
T Consensus 107 DYNlYsN-W~a-----V~i~~~~~~~d~ 128 (175)
T d1gwya_ 107 DYNWYSN-WWD-----VKIYSGKRRADQ 128 (175)
T ss_dssp CCSSCCC-EEE-----EEEEESCCCCCH
T ss_pred chhhhhh-hee-----eeeccCCcCcch
Confidence 4999988 884 389999877543
No 6
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=6.34 E-value=73 Score=17.34 Aligned_cols=11 Identities=55% Similarity=0.634 Sum_probs=8.4
Q ss_pred hhhhccccCCC
Q 042214 15 DQRLFNQEKGM 25 (165)
Q Consensus 15 DsRLFNQs~G~ 25 (165)
=|||-|.+.|-
T Consensus 11 cqrlhnts~g~ 21 (31)
T d1cmra_ 11 CQRLHNTSKGW 21 (31)
T ss_dssp STTTSSCCCCC
T ss_pred HHHHhcCcccc
Confidence 48999988763
No 7
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=48 Score=25.97 Aligned_cols=15 Identities=53% Similarity=0.970 Sum_probs=11.9
Q ss_pred CCCCCccccccccccCC
Q 042214 29 FATDDQYNVYDKGLFTA 45 (165)
Q Consensus 29 Fg~Dd~YNVYDKPLF~~ 45 (165)
|+||| |+||--||..
T Consensus 118 FADDd--NtYsl~LF~e 132 (261)
T d3cu0a1 118 FADDD--NTYSRELFEE 132 (261)
T ss_dssp ECCTT--SEECHHHHHH
T ss_pred EecCC--CcccHHHHHH
Confidence 57775 8999999953
No 8
>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.41 E-value=52 Score=25.55 Aligned_cols=15 Identities=53% Similarity=0.864 Sum_probs=11.7
Q ss_pred CCCCCccccccccccCC
Q 042214 29 FATDDQYNVYDKGLFTA 45 (165)
Q Consensus 29 Fg~Dd~YNVYDKPLF~~ 45 (165)
|++|| |+||--||..
T Consensus 111 FADDd--NtYsl~lFde 125 (252)
T d1v82a_ 111 FADDD--NTYSLELFEE 125 (252)
T ss_dssp ECCTT--SEECHHHHHH
T ss_pred EecCC--CcccHHHHHH
Confidence 57775 8999999953
No 9
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex aeolicus [TaxId: 63363]}
Probab=5.40 E-value=1.4e+02 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.9
Q ss_pred CchhhHHHHHHHhcCcc
Q 042214 112 PFGLDEFLTEVEKGGKK 128 (165)
Q Consensus 112 pFGld~fL~~aKk~~kr 128 (165)
|+.|..++.++++..++
T Consensus 1 p~~l~e~i~~l~~~~~~ 17 (108)
T d1t6t1_ 1 PRNLSEWIKELKKASRE 17 (108)
T ss_dssp CCSHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHcCCC
Confidence 88999999999885443
No 10
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C) {European sea anemone (Actinia equina) [TaxId: 6106]}
Probab=5.23 E-value=59 Score=24.23 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=16.7
Q ss_pred ccccccccccCCCccccccccCCCCCCc
Q 042214 34 QYNVYDKGLFTAQPTLSTLYRPKKDADD 61 (165)
Q Consensus 34 ~YNVYDKPLF~~~~a~~sIYRP~~~~d~ 61 (165)
.||+|.. ||+ -.||.+++..|.
T Consensus 105 DYNlYsN-W~~-----V~v~~~~~~~d~ 126 (175)
T d1iaza_ 105 DYNWYSN-WWN-----VRIYKGKRRADQ 126 (175)
T ss_dssp CTTTCCC-EEE-----EEEESSCCCCCH
T ss_pred chhhhhh-hee-----eeeccCCcchhH
Confidence 4999998 884 379988876543
Done!