Query 042215
Match_columns 148
No_of_seqs 114 out of 702
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3386 Copper transporter [In 100.0 7.7E-36 1.7E-40 229.1 14.3 110 22-131 13-143 (155)
2 PF04145 Ctr: Ctr copper trans 100.0 4.8E-35 1E-39 218.1 4.0 102 25-126 1-144 (144)
3 PF11446 DUF2897: Protein of u 93.2 0.081 1.8E-06 34.2 2.4 28 105-132 1-28 (55)
4 COG2991 Uncharacterized protei 83.7 1 2.2E-05 30.8 2.3 23 108-131 7-29 (77)
5 COG3763 Uncharacterized protei 79.3 1.4 3E-05 29.9 1.7 31 109-139 8-38 (71)
6 PF03672 UPF0154: Uncharacteri 75.4 1.4 3.1E-05 29.3 0.9 21 110-130 2-22 (64)
7 PF06800 Sugar_transport: Suga 70.5 57 0.0012 27.3 9.6 92 36-130 91-186 (269)
8 PRK15051 4-amino-4-deoxy-L-ara 64.6 49 0.0011 23.6 10.2 46 84-130 37-89 (111)
9 PF14012 DUF4229: Protein of u 62.1 32 0.00069 22.8 5.4 48 84-134 6-59 (69)
10 PRK01844 hypothetical protein; 61.2 4.7 0.0001 27.4 1.2 19 111-129 10-28 (72)
11 PRK00523 hypothetical protein; 56.2 6.7 0.00015 26.7 1.2 19 111-129 11-29 (72)
12 PLN03223 Polycystin cation cha 56.1 90 0.002 32.3 9.3 57 62-129 1299-1355(1634)
13 PRK13499 rhamnose-proton sympo 55.4 1E+02 0.0022 26.8 8.6 36 36-71 119-157 (345)
14 PRK14855 nhaA pH-dependent sod 51.2 1.7E+02 0.0037 26.2 9.5 71 55-127 334-411 (423)
15 PF15050 SCIMP: SCIMP protein 48.9 24 0.00051 26.5 3.3 19 108-126 7-28 (133)
16 PRK11431 multidrug efflux syst 48.9 96 0.0021 22.1 7.8 70 58-130 6-82 (105)
17 TIGR00908 2A0305 ethanolamine 45.7 1.3E+02 0.0027 25.9 7.8 19 112-130 415-433 (442)
18 COG3105 Uncharacterized protei 44.7 22 0.00047 27.0 2.5 17 111-127 11-27 (138)
19 PF06376 DUF1070: Protein of u 43.3 19 0.00042 21.0 1.6 13 93-105 15-27 (34)
20 PF04306 DUF456: Protein of un 42.1 1.5E+02 0.0031 22.2 7.7 73 47-128 29-101 (140)
21 PRK02898 cobalt transport prot 39.8 21 0.00047 25.7 1.8 28 83-126 64-91 (100)
22 COG1930 CbiN ABC-type cobalt t 39.7 18 0.0004 25.8 1.4 25 84-124 63-87 (97)
23 PF11772 EpuA: DNA-directed RN 39.5 15 0.00033 22.9 0.8 19 111-129 8-26 (47)
24 PF06612 DUF1146: Protein of u 38.5 33 0.00072 21.3 2.3 13 60-72 4-16 (48)
25 PF10031 DUF2273: Small integr 38.3 1E+02 0.0022 19.3 5.2 31 94-124 14-48 (51)
26 PF12273 RCR: Chitin synthesis 38.3 26 0.00056 25.6 2.1 22 50-71 4-25 (130)
27 PF09578 Spore_YabQ: Spore cor 36.9 1.3E+02 0.0028 20.1 8.0 73 54-127 5-79 (80)
28 PF13829 DUF4191: Domain of un 36.6 1E+02 0.0023 25.2 5.5 37 94-130 39-75 (224)
29 PRK10929 putative mechanosensi 35.2 2.8E+02 0.0062 27.9 9.2 76 47-122 833-912 (1109)
30 PRK10255 PTS system N-acetyl g 35.1 71 0.0015 30.1 4.9 36 92-127 74-114 (648)
31 PF01307 Plant_vir_prot: Plant 34.8 58 0.0013 23.4 3.4 39 110-148 9-47 (104)
32 PF11085 YqhR: Conserved membr 34.5 1.5E+02 0.0032 23.5 5.8 26 104-129 131-156 (173)
33 TIGR02327 int_mem_ywzB conserv 34.2 37 0.00081 22.7 2.2 17 111-127 40-56 (68)
34 PRK10334 mechanosensitive chan 32.2 3E+02 0.0064 22.9 9.2 44 81-124 65-110 (286)
35 PRK10650 multidrug efflux syst 31.5 2E+02 0.0043 20.7 7.8 70 58-130 12-88 (109)
36 PF11674 DUF3270: Protein of u 30.8 1.6E+02 0.0034 20.8 5.0 39 90-130 49-87 (90)
37 PF01062 Bestrophin: Bestrophi 30.8 1.4E+02 0.0029 24.2 5.4 43 93-135 225-267 (293)
38 PRK11715 inner membrane protei 29.6 3.6E+02 0.0078 24.2 8.2 61 47-117 303-367 (436)
39 PF06814 Lung_7-TM_R: Lung sev 29.5 2.7E+02 0.0059 22.8 7.1 29 79-107 111-140 (295)
40 COG5336 Uncharacterized protei 29.2 66 0.0014 23.8 2.9 22 104-125 45-66 (116)
41 PF02990 EMP70: Endomembrane p 28.7 4.4E+02 0.0095 23.8 9.0 32 110-143 376-407 (521)
42 KOG2322 N-methyl-D-aspartate r 28.1 2E+02 0.0044 23.8 5.9 80 40-128 76-159 (237)
43 PF06305 DUF1049: Protein of u 27.7 69 0.0015 20.2 2.6 19 109-127 22-40 (68)
44 TIGR03510 XapX XapX domain. Th 27.6 63 0.0014 20.3 2.3 25 111-136 2-26 (49)
45 PRK09541 emrE multidrug efflux 26.9 2.4E+02 0.0052 20.2 7.7 70 58-130 7-83 (110)
46 PF10112 Halogen_Hydrol: 5-bro 26.7 3E+02 0.0065 21.2 6.8 24 103-126 25-48 (199)
47 PF10699 HAP2-GCS1: Male gamet 26.5 30 0.00066 21.6 0.7 21 120-148 19-39 (49)
48 PF09773 Meckelin: Meckelin (T 25.8 3.3E+02 0.0072 26.4 7.8 69 49-128 362-430 (853)
49 PF06422 PDR_CDR: CDR ABC tran 25.3 93 0.002 21.9 3.1 21 124-144 83-103 (103)
50 COG4906 Predicted membrane pro 24.7 2.1E+02 0.0044 26.9 5.8 29 44-72 286-314 (696)
51 PF01102 Glycophorin_A: Glycop 24.4 57 0.0012 24.2 1.9 6 128-133 89-94 (122)
52 COG2076 EmrE Membrane transpor 24.3 2.8E+02 0.0061 20.0 6.7 70 58-130 7-83 (106)
53 PF08636 Pkr1: ER protein Pkr1 23.9 2.4E+02 0.0053 19.2 6.0 35 74-111 14-48 (75)
54 PRK10132 hypothetical protein; 23.8 76 0.0016 22.9 2.4 18 111-128 90-107 (108)
55 TIGR01165 cbiN cobalt transpor 23.3 19 0.00042 25.5 -0.7 15 83-97 64-78 (91)
56 PRK12873 ubiA prenyltransferas 22.7 4.7E+02 0.01 22.0 7.7 76 55-133 177-262 (294)
57 COG5547 Small integral membran 22.6 2.4E+02 0.0051 18.5 4.5 25 102-126 22-50 (62)
58 PHA00024 IX minor coat protein 22.1 1.4E+02 0.003 17.3 2.8 24 105-128 2-25 (33)
59 COG1267 PgpA Phosphatidylglyce 22.1 93 0.002 24.1 2.8 33 115-147 106-138 (160)
60 COG4657 RnfA Predicted NADH:ub 21.9 3.3E+02 0.0072 21.6 5.8 25 81-105 127-151 (193)
61 PF06123 CreD: Inner membrane 21.8 5.8E+02 0.013 22.8 8.3 60 47-116 297-360 (430)
62 PRK00753 psbL photosystem II r 21.5 1.4E+02 0.0029 17.9 2.7 19 47-65 16-34 (39)
63 PRK10452 multidrug efflux syst 21.2 3.4E+02 0.0073 19.8 6.1 68 58-129 7-82 (120)
64 PF12273 RCR: Chitin synthesis 21.0 82 0.0018 22.9 2.2 21 113-133 9-29 (130)
65 PF06679 DUF1180: Protein of u 20.8 81 0.0018 24.5 2.2 35 51-85 98-132 (163)
66 CHL00038 psbL photosystem II p 20.7 1.5E+02 0.0032 17.7 2.8 20 47-66 15-34 (38)
67 PF14340 DUF4395: Domain of un 20.6 3.5E+02 0.0076 19.8 6.0 35 91-125 8-42 (131)
68 PF07219 HemY_N: HemY protein 20.3 1.4E+02 0.003 20.9 3.2 20 35-54 3-22 (108)
69 COG0472 Rfe UDP-N-acetylmuramy 20.2 1.9E+02 0.0041 24.6 4.5 26 107-132 188-213 (319)
70 PF15179 Myc_target_1: Myc tar 20.1 89 0.0019 25.1 2.3 16 111-126 25-40 (197)
71 PF09997 DUF2238: Predicted me 20.0 80 0.0017 24.1 2.0 34 38-71 80-114 (143)
No 1
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-36 Score=229.08 Aligned_cols=110 Identities=36% Similarity=0.582 Sum_probs=100.6
Q ss_pred CcceeeEEecccceeEEecCCcCCChHHHHHHHHHHHHHHHHHHHHhhcccc-----c---cC------------CCc-h
Q 042215 22 KMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLI-----K---TG------------TGN-V 80 (148)
Q Consensus 22 ~~~M~M~F~~~~~~~lLF~~W~~~s~~~~~~s~v~vf~la~l~E~L~~~r~~-----~---p~------------~~~-~ 80 (148)
.|+|.|+|||+.++++|||+|+++|+++|+++|+++|++|+++|+||+.|+. + +. +.. .
T Consensus 13 ~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 92 (155)
T KOG3386|consen 13 TMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLNS 92 (155)
T ss_pred CCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhhh
Confidence 8999999999988999999999999999999999999999999999998853 1 10 001 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccccc
Q 042215 81 AAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVF 131 (148)
Q Consensus 81 ~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~~~ 131 (148)
..|++|+++|++|+.++|+|||++||||+|+++||++|+++||++|+.+..
T Consensus 93 ~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~ 143 (155)
T KOG3386|consen 93 ASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF 143 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence 679999999999999999999999999999999999999999999999886
No 2
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=100.00 E-value=4.8e-35 Score=218.08 Aligned_cols=102 Identities=35% Similarity=0.645 Sum_probs=58.6
Q ss_pred eeeEEeccc-ceeEEecCCcCCChHHHHHHHHHHHHHHHHHHHHhhcccc------cc-----------C----------
Q 042215 25 MHMTFFWGK-NALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLI------KT-----------G---------- 76 (148)
Q Consensus 25 M~M~F~~~~-~~~lLF~~W~~~s~~~~~~s~v~vf~la~l~E~L~~~r~~------~p-----------~---------- 76 (148)
|+|+|||+. ++++||++|+++|.++|+++|+++|++|+++|+||.+|.. ++ +
T Consensus 1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF04145_consen 1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS 80 (144)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence 899999997 9999999999999999999999999999999999998852 00 0
Q ss_pred --------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh
Q 042215 77 --------------TGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLF 126 (148)
Q Consensus 77 --------------~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~f 126 (148)
+.+++.|++|+++|++|++++|+|||+|||||+|+|+||++|.++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F 144 (144)
T PF04145_consen 81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF 144 (144)
T ss_dssp ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence 00135689999999999999999999999999999999999999999998
No 3
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=93.22 E-value=0.081 Score=34.16 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=25.8
Q ss_pred HhhhhHHHHHHHHHHHHhhHhhcccccc
Q 042215 105 MSFNVGVFLAAVAGHSLGFLLFGSRVFH 132 (148)
Q Consensus 105 MTfN~~lf~aVv~G~~iGy~~fg~~~~~ 132 (148)
|+.|+|+++.+++|..+|.+.--+++.+
T Consensus 1 ~~~~~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 1 STWNPWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence 6899999999999999999998888776
No 4
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.65 E-value=1 Score=30.76 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHhhHhhccccc
Q 042215 108 NVGVFLAAVAGHSLGFLLFGSRVF 131 (148)
Q Consensus 108 N~~lf~aVv~G~~iGy~~fg~~~~ 131 (148)
-.++|+.|++|.++||.+- ++++
T Consensus 7 tFg~Fllvi~gMsiG~I~k-rk~I 29 (77)
T COG2991 7 TFGIFLLVIAGMSIGYIFK-RKSI 29 (77)
T ss_pred HHHHHHHHHHHHhHhhhee-cccc
Confidence 3578999999999999754 4443
No 5
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.26 E-value=1.4 Score=29.90 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHhhHhhccccccCCCCCCC
Q 042215 109 VGVFLAAVAGHSLGFLLFGSRVFHKSAPPPK 139 (148)
Q Consensus 109 ~~lf~aVv~G~~iGy~~fg~~~~~~~~~~~~ 139 (148)
.++.+|+++|...|||+-.+..-+--.++|+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5678899999999998876654333333333
No 6
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.44 E-value=1.4 Score=29.29 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhHhhcccc
Q 042215 110 GVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 110 ~lf~aVv~G~~iGy~~fg~~~ 130 (148)
.++++.++|.++|+|+-.+..
T Consensus 2 ~iilali~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYM 22 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999865443
No 7
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=70.48 E-value=57 Score=27.34 Aligned_cols=92 Identities=12% Similarity=0.286 Sum_probs=51.4
Q ss_pred eEEecCCcCCChHHHHHHHHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hh-HH
Q 042215 36 LVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSF---NV-GV 111 (148)
Q Consensus 36 ~lLF~~W~~~s~~~~~~s~v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTf---N~-~l 111 (148)
.++|.+|+..+..-+-..-++++++++. +...|..+.+..+...+..+.++..+-.+++|.+.-+..-+ |. -.
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~---lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~ 167 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVI---LTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSA 167 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHH---HhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHh
Confidence 5789999976654433333333344443 33334332211111233445555566667777666554433 22 26
Q ss_pred HHHHHHHHHHhhHhhcccc
Q 042215 112 FLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 112 f~aVv~G~~iGy~~fg~~~ 130 (148)
++-=-+|..+|-++|....
T Consensus 168 ~lPqaiGm~i~a~i~~~~~ 186 (269)
T PF06800_consen 168 FLPQAIGMLIGAFIFNLFS 186 (269)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7777889999999988755
No 8
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=64.60 E-value=49 Score=23.56 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHhhHhhcccc
Q 042215 84 IIQTFMHTIRVGLANLVMLALMS-------FNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 84 l~~sll~~~q~~l~YlLMLvvMT-------fN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
+....+-.+++.+++++...++. |-.|- ++.+....+|+++|+.+.
T Consensus 37 l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~l 89 (111)
T PRK15051 37 VLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPV 89 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence 44556666888888888887776 44444 667778889999998764
No 9
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=62.13 E-value=32 Score=22.82 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHhhHhhccccccCC
Q 042215 84 IIQTFMHTIRVGLANLVMLALMSFN------VGVFLAAVAGHSLGFLLFGSRVFHKS 134 (148)
Q Consensus 84 l~~sll~~~q~~l~YlLMLvvMTfN------~~lf~aVv~G~~iGy~~fg~~~~~~~ 134 (148)
+.|..+...-.. .++++..... ....+|++++..++|++|.+.+.+-+
T Consensus 6 l~Rl~lfv~~~~---vi~~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~~R~~~~ 59 (69)
T PF14012_consen 6 LARLGLFVVLFA---VIWLVGLLIGVEVPLLVAALLALVISMPLSYVLLRRLRDRAS 59 (69)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444444 3555555555 67889999999999999998876543
No 10
>PRK01844 hypothetical protein; Provisional
Probab=61.23 E-value=4.7 Score=27.42 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHhhccc
Q 042215 111 VFLAAVAGHSLGFLLFGSR 129 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg~~ 129 (148)
.+++.++|.++|+|+-.+.
T Consensus 10 ~I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 10 GVVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678889999999885443
No 11
>PRK00523 hypothetical protein; Provisional
Probab=56.22 E-value=6.7 Score=26.68 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhHhhccc
Q 042215 111 VFLAAVAGHSLGFLLFGSR 129 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg~~ 129 (148)
++++.++|.++|+|+-.+.
T Consensus 11 ~i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567888999998885443
No 12
>PLN03223 Polycystin cation channel protein; Provisional
Probab=56.11 E-value=90 Score=32.27 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=32.0
Q ss_pred HHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccc
Q 042215 62 ILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSR 129 (148)
Q Consensus 62 ~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~ 129 (148)
++...+|.+|.++ -++....+.+++...+.=+.+|++|+.++- ++=..+|+++||..
T Consensus 1299 IFLsiLKfLRLLR--FNPrL~vLt~TLrrAapDLa~F~IIF~IVF---------~AFAqLG~LLFGt~ 1355 (1634)
T PLN03223 1299 IILLLGRILKLMD--FQPRLGVITRTLWLAGADLMHFFVIFGMVF---------VGYAFIGHVIFGNA 1355 (1634)
T ss_pred HHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhccC
Confidence 4444444444432 123445677777777777777777765542 11224567777764
No 13
>PRK13499 rhamnose-proton symporter; Provisional
Probab=55.37 E-value=1e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred eEEecCCc---CCChHHHHHHHHHHHHHHHHHHHHhhcc
Q 042215 36 LVLFKGWP---GTSTGMYALALVFVFAMGILVEWLSHSR 71 (148)
Q Consensus 36 ~lLF~~W~---~~s~~~~~~s~v~vf~la~l~E~L~~~r 71 (148)
+++|.+|+ .++.+...+.-+++.++++..-.....|
T Consensus 119 ~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 119 PIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788999 7777777766667777777777764443
No 14
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=51.19 E-value=1.7e+02 Score=26.23 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHH-HHH------HhhhhHHHHHHHHHHHHhhHhhc
Q 042215 55 VFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVM-LAL------MSFNVGVFLAAVAGHSLGFLLFG 127 (148)
Q Consensus 55 v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLM-Lvv------MTfN~~lf~aVv~G~~iGy~~fg 127 (148)
+++|..+.+..=++..| .|+.-+|+.-+.-+++.++-.+.|-++= |.. =.=-.+++++-++...+||.+..
T Consensus 334 lGI~~~s~lavkl~~a~--lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 334 LGVVGGAWLAVRLGLAS--LPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554333222 3566667777888999999998886553 222 01124677777777789998884
No 15
>PF15050 SCIMP: SCIMP protein
Probab=48.95 E-value=24 Score=26.51 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=11.5
Q ss_pred hhHHHHHH---HHHHHHhhHhh
Q 042215 108 NVGVFLAA---VAGHSLGFLLF 126 (148)
Q Consensus 108 N~~lf~aV---v~G~~iGy~~f 126 (148)
|.|+++|| +++.++|..+|
T Consensus 7 nFWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 55666653 45666666666
No 16
>PRK11431 multidrug efflux system protein; Provisional
Probab=48.87 E-value=96 Score=22.12 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhcccc
Q 042215 58 FAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALM-------SFNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 58 f~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvM-------TfN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
.++|.+.|..-..-.++- +. ..+..-+++..+-+.++|.++-.+| .|-.|--+.++.-..+|.++|+.+.
T Consensus 6 L~~Ai~~Ev~~t~~Lk~s--~g-f~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~ 82 (105)
T PRK11431 6 LVIAGLLEVVWAVGLKYT--HG-FSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA 82 (105)
T ss_pred HHHHHHHHHHHHHHHHhh--hC-CccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456777776554332211 11 1234445566777788888887666 5777778888888899999998764
No 17
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=45.74 E-value=1.3e+02 Score=25.88 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhHhhcccc
Q 042215 112 FLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 112 f~aVv~G~~iGy~~fg~~~ 130 (148)
.+.+.+...++|++..|+.
T Consensus 415 ~~~~~~~~~~~~~l~~~~~ 433 (442)
T TIGR00908 415 AVAIFVVLIGYYFLYSRHH 433 (442)
T ss_pred HHHHHHHHHHHHHhhhhch
Confidence 3566677777888775543
No 18
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.65 E-value=22 Score=27.00 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhHhhc
Q 042215 111 VFLAAVAGHSLGFLLFG 127 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg 127 (148)
..++.|+|.+|||++-.
T Consensus 11 a~igLvvGi~IG~li~R 27 (138)
T COG3105 11 ALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788999999998853
No 19
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=43.25 E-value=19 Score=21.02 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q 042215 93 RVGLANLVMLALM 105 (148)
Q Consensus 93 q~~l~YlLMLvvM 105 (148)
.=.++|+||+++-
T Consensus 15 Dqgiay~Lm~~Al 27 (34)
T PF06376_consen 15 DQGIAYMLMLVAL 27 (34)
T ss_pred hHHHHHHHHHHHH
Confidence 3468999998763
No 20
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=42.07 E-value=1.5e+02 Score=22.22 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh
Q 042215 47 TGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLF 126 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~f 126 (148)
.+.+......+.+++...|++.-.+..|+..-+++. ..-..+-...+.++...+ |+++.-.+|..+++++=
T Consensus 29 ~~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~----~~ga~iG~IvG~f~~~p~-----G~iiG~~~Ga~l~El~~ 99 (140)
T PF04306_consen 29 GWWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWG----IWGAIIGGIVGFFVLPPL-----GLIIGPFLGAFLGELLR 99 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHh
Confidence 355666666677888888888777665543322222 234455556666666655 88888888888888844
Q ss_pred cc
Q 042215 127 GS 128 (148)
Q Consensus 127 g~ 128 (148)
++
T Consensus 100 ~~ 101 (140)
T PF04306_consen 100 GK 101 (140)
T ss_pred CC
Confidence 43
No 21
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=39.77 E-value=21 Score=25.70 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh
Q 042215 83 GIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLF 126 (148)
Q Consensus 83 ~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~f 126 (148)
.=+.++|+.+|..++ |.++|+.+||.-=
T Consensus 64 GEiESLLFaLQAAiG----------------AgiIgY~lG~~~g 91 (100)
T PRK02898 64 GEIESLLFALQAALG----------------AGIIGYILGYYKG 91 (100)
T ss_pred chHHHHHHHHHHHHh----------------hhhhheeeeehhh
Confidence 347899999999987 6778888887753
No 22
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=39.68 E-value=18 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhH
Q 042215 84 IIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFL 124 (148)
Q Consensus 84 l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~ 124 (148)
=+.++|+.+|..++ |.|+|+.+||.
T Consensus 63 EIESLLFslQaaiG----------------a~IIgY~lGyy 87 (97)
T COG1930 63 EIESLLFSLQAAIG----------------AGIIGYFLGYY 87 (97)
T ss_pred cHHHHHHHHHHHhc----------------ceeeeeeeeee
Confidence 47899999999876 55666666664
No 23
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=39.53 E-value=15 Score=22.87 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHhhccc
Q 042215 111 VFLAAVAGHSLGFLLFGSR 129 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg~~ 129 (148)
.+++.++|..+||-+.|.-
T Consensus 8 ~~~~l~iGlmIGY~viG~G 26 (47)
T PF11772_consen 8 AILALAIGLMIGYGVIGDG 26 (47)
T ss_pred HHHHHHHHHHeeeeeeCCC
Confidence 5778899999999998875
No 24
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=38.47 E-value=33 Score=21.26 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=6.4
Q ss_pred HHHHHHHHhhccc
Q 042215 60 MGILVEWLSHSRL 72 (148)
Q Consensus 60 la~l~E~L~~~r~ 72 (148)
+++.+..+...|+
T Consensus 4 I~la~~aLq~l~~ 16 (48)
T PF06612_consen 4 IALAFWALQSLRW 16 (48)
T ss_pred HHHHHHHHHhcCH
Confidence 3444555555543
No 25
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=38.28 E-value=1e+02 Score=19.31 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhH----HHHHHHHHHHHhhH
Q 042215 94 VGLANLVMLALMSFNVG----VFLAAVAGHSLGFL 124 (148)
Q Consensus 94 ~~l~YlLMLvvMTfN~~----lf~aVv~G~~iGy~ 124 (148)
..++.++=++++++-.| +++.+++|..+|..
T Consensus 14 ~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~ 48 (51)
T PF10031_consen 14 GLIGLILALLILTFGFWKTLFILLFAAIGYYIGKY 48 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777766 56667777777764
No 26
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.25 E-value=26 Score=25.58 Aligned_cols=22 Identities=5% Similarity=0.153 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 042215 50 YALALVFVFAMGILVEWLSHSR 71 (148)
Q Consensus 50 ~~~s~v~vf~la~l~E~L~~~r 71 (148)
+++.+|++|++.++.-++...|
T Consensus 4 l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 27
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=36.93 E-value=1.3e+02 Score=20.13 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhHhhc
Q 042215 54 LVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALM--SFNVGVFLAAVAGHSLGFLLFG 127 (148)
Q Consensus 54 ~v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvM--TfN~~lf~aVv~G~~iGy~~fg 127 (148)
++.=+.+++++..++..|...|.+ ++...+.+.+...++..+-+...+..= ....++++++++|..+-+..++
T Consensus 5 ~~~G~~lg~~yD~~r~~r~~~~~~-~~~~~i~DllfWl~~~~~~F~~l~~~N~G~iR~Y~~lg~~~G~~lY~~~ls 79 (80)
T PF09578_consen 5 ILSGIILGFLYDLYRVFRRVFRHS-RWLTGIEDLLFWLLAALIVFYFLYWTNYGEIRFYIFLGILLGMILYFRLLS 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHccceeeeHHHHHHHHHHHHHHHHHhc
Confidence 333367899999999988765432 444555666666555554433332211 1234688888888888666554
No 28
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.57 E-value=1e+02 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcccc
Q 042215 94 VGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 94 ~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
+.+..+|-++.=+.=.|++++|.+|..+.-++|+++-
T Consensus 39 ~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra 75 (224)
T PF13829_consen 39 IAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRA 75 (224)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556789999999999999999875
No 29
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=35.22 E-value=2.8e+02 Score=27.91 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc--c--ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 042215 47 TGMYALALVFVFAMGILVEWLSHSRL--I--KTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLG 122 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~l~E~L~~~r~--~--~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iG 122 (148)
.+..+.+.+++++..++.+.++..-. . +.+-++....++.+++..+-++++.++.|-.+-+|..-+.+++.+.++|
T Consensus 833 l~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVg 912 (1109)
T PRK10929 833 LGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVG 912 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45566666666555566666664311 1 1122334456666777777777777777777777766554444433333
No 30
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=35.11 E-value=71 Score=30.05 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHhhHhhc
Q 042215 92 IRVGLANLVMLALM-----SFNVGVFLAAVAGHSLGFLLFG 127 (148)
Q Consensus 92 ~q~~l~YlLMLvvM-----TfN~~lf~aVv~G~~iGy~~fg 127 (148)
+...++|++|+.++ +.|.++|..+++|...++..=.
T Consensus 74 la~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~l~nk 114 (648)
T PRK10255 74 LAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNR 114 (648)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHHHHHH
Confidence 44556777776664 4588999999999999875433
No 31
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=34.83 E-value=58 Score=23.42 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhHhhccccccCCCCCCCCCCCCCCCC
Q 042215 110 GVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMSC 148 (148)
Q Consensus 110 ~lf~aVv~G~~iGy~~fg~~~~~~~~~~~~~~~~~~~~~ 148 (148)
+.++++++|.+++-+++-..+-+.++.-|+.-.+|-++|
T Consensus 9 k~~l~~aiG~~lal~i~~ltr~tlPhvGDniH~LPhGG~ 47 (104)
T PF01307_consen 9 KSYLAAAIGVSLALIIFTLTRSTLPHVGDNIHSLPHGGR 47 (104)
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCc
Confidence 456777788888877777666566665555556665543
No 32
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=34.52 E-value=1.5e+02 Score=23.49 Aligned_cols=26 Identities=8% Similarity=0.048 Sum_probs=19.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhHhhccc
Q 042215 104 LMSFNVGVFLAAVAGHSLGFLLFGSR 129 (148)
Q Consensus 104 vMTfN~~lf~aVv~G~~iGy~~fg~~ 129 (148)
.-|.-.-+|+-++-|..|||-+--..
T Consensus 131 ~nTiiT~~CiyiLyGlFIGYSIsfE~ 156 (173)
T PF11085_consen 131 WNTIITTLCIYILYGLFIGYSISFEY 156 (173)
T ss_pred hhHHHHHHHHHHHHHHHhceeehhhh
Confidence 34555568899999999999775443
No 33
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=34.16 E-value=37 Score=22.66 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhHhhc
Q 042215 111 VFLAAVAGHSLGFLLFG 127 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg 127 (148)
+++||++|+.++.|+.+
T Consensus 40 vllaIalGylvs~FfL~ 56 (68)
T TIGR02327 40 VLIAIALGYTVSHFFLE 56 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777777654
No 34
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=32.18 E-value=3e+02 Score=22.92 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhhH
Q 042215 81 AAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAA--VAGHSLGFL 124 (148)
Q Consensus 81 ~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aV--v~G~~iGy~ 124 (148)
..+++..+...+-+.++.+.-|-..-+|..-++++ ++|.++|..
T Consensus 65 ~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a 110 (286)
T PRK10334 65 VADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLA 110 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 34455555544444445455555556666655554 344455543
No 35
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=31.46 E-value=2e+02 Score=20.67 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhcccc
Q 042215 58 FAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALM-------SFNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 58 f~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvM-------TfN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
.++|.+.|-.-..-.++- +. ..+..-++...+-+.++|.++-.+| .|-+|--+.++.-..+|.++|+.+.
T Consensus 12 L~~Ai~~Ev~~t~~Lk~s--~g-f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~ 88 (109)
T PRK10650 12 LALAIVLEIVANIFLKFS--DG-FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL 88 (109)
T ss_pred HHHHHHHHHHHHHHHHHh--cC-CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 356777776554332211 11 1234446777788888888887777 4666666666777788999988754
No 36
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=30.84 E-value=1.6e+02 Score=20.78 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcccc
Q 042215 90 HTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 90 ~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
..+.++++|+ +++|-.|.++-++..+|.++|-...-+..
T Consensus 49 cI~tvlfsFv--fLs~kl~t~~Af~~Ai~~Sl~~~~~~~~~ 87 (90)
T PF11674_consen 49 CIFTVLFSFV--FLSLKLNTFWAFPLAILISLAITQLVRKF 87 (90)
T ss_pred HHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554 46777787776666666666655544433
No 37
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=30.81 E-value=1.4e+02 Score=24.19 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccccccCCC
Q 042215 93 RVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSA 135 (148)
Q Consensus 93 q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~~~~~~~ 135 (148)
+.+..|++.|.+.-.+..-.+++++...++++++|...+....
T Consensus 225 ~~l~~y~~~lPf~l~~~~~~~~~~~~~l~~~~~~gl~~ig~~l 267 (293)
T PF01062_consen 225 RFLYIYLLLLPFGLVDSLGWLTPPITFLVSFFFLGLEEIGEEL 267 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555555556888888999999998777643
No 38
>PRK11715 inner membrane protein; Provisional
Probab=29.58 E-value=3.6e+02 Score=24.19 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHH
Q 042215 47 TGMYALALVFVFAMGI-LVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLAL---MSFNVGVFLAAVA 117 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~-l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvv---MTfN~~lf~aVv~ 117 (148)
..+|.+-+|++-++++ +.|.++..| .|.+|-+|-++..++-|+|.|.. ..||..+.+|..+
T Consensus 303 A~KYgiLFI~LTF~~fFlfE~~~~~~----------iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a 367 (436)
T PRK11715 303 AVKYAILFIALTFAAFFLFELLKKLR----------IHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALA 367 (436)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCce----------ecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 4578777776655554 567766543 67889999999999999988876 5688776666543
No 39
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=29.46 E-value=2.7e+02 Score=22.78 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 042215 79 NVAAGIIQTFMHTIRVGLANLVML-ALMSF 107 (148)
Q Consensus 79 ~~~~~l~~sll~~~q~~l~YlLML-vvMTf 107 (148)
+....+...+++.++-+++++|.| +.|-|
T Consensus 111 ~~~~~~~~~i~~~~k~~~~~~llllis~Gy 140 (295)
T PF06814_consen 111 SEGWMIFAYIFSALKRTLSFFLLLLISLGY 140 (295)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 445567888888888888887774 44444
No 40
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=66 Score=23.75 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhHh
Q 042215 104 LMSFNVGVFLAAVAGHSLGFLL 125 (148)
Q Consensus 104 vMTfN~~lf~aVv~G~~iGy~~ 125 (148)
+|+-..-++-.|++|+.|||++
T Consensus 45 a~klssefIsGilVGa~iG~ll 66 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLL 66 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
No 41
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.71 E-value=4.4e+02 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhHhhccccccCCCCCCCCCCC
Q 042215 110 GVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDL 143 (148)
Q Consensus 110 ~lf~aVv~G~~iGy~~fg~~~~~~~~~~~~~~~~ 143 (148)
|+++++-+...=|++-+.+... .+.+.++|+.
T Consensus 376 w~~v~~PL~~lG~~~g~k~~~~--~~~p~~~n~i 407 (521)
T PF02990_consen 376 WFFVSIPLTFLGGYFGFKNPPI--DEFPCRTNQI 407 (521)
T ss_pred HHHHhhhhhhcchhhhcCcccc--ccCCcCCCCC
Confidence 4455444444444444433222 1344455533
No 42
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=28.12 E-value=2e+02 Score=23.81 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=45.1
Q ss_pred cCCcCCChHHHHHHHHHHHHHHHHH-HHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHH-
Q 042215 40 KGWPGTSTGMYALALVFVFAMGILV-EWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVG-VFLAAV- 116 (148)
Q Consensus 40 ~~W~~~s~~~~~~s~v~vf~la~l~-E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~-lf~aVv- 116 (148)
+.|..++++.| ..|+++|++..+. -.....|+.-|. + -.++-.+....+|.++++.-.||.- +..|++
T Consensus 76 ~~~v~~~~~~~-~~~~~vf~vt~l~l~c~~~~r~k~P~------N--~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al~I 146 (237)
T KOG2322|consen 76 QDFVRRNPALY-WALIVVFIVTYLSLACCEGLRRKSPV------N--LILLGIFTLAEAFMTGLVTAFYDAKVVLLALII 146 (237)
T ss_pred HHHHHhCcHHH-HHHHHHHHHHHHHHHccCcccccCcH------H--HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56777888888 4555555544332 222233322111 1 2355667788999999999999954 333333
Q ss_pred -HHHHHhhHhhcc
Q 042215 117 -AGHSLGFLLFGS 128 (148)
Q Consensus 117 -~G~~iGy~~fg~ 128 (148)
.+..+|-.+|.-
T Consensus 147 T~~V~~slt~~t~ 159 (237)
T KOG2322|consen 147 TTVVVLSLTLFTL 159 (237)
T ss_pred HHhheeeEEEEEE
Confidence 344444444433
No 43
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.66 E-value=69 Score=20.23 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHhhHhhc
Q 042215 109 VGVFLAAVAGHSLGFLLFG 127 (148)
Q Consensus 109 ~~lf~aVv~G~~iGy~~fg 127 (148)
+.++++.++|..+|.++..
T Consensus 22 l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654
No 44
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=27.60 E-value=63 Score=20.29 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhHhhccccccCCCC
Q 042215 111 VFLAAVAGHSLGFLLFGSRVFHKSAP 136 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg~~~~~~~~~ 136 (148)
+.+|..+|..+|.+ |+..+...|.|
T Consensus 2 ~llsl~~G~~vG~~-~~~l~vp~PAP 26 (49)
T TIGR03510 2 YLLSLGAGLLVGAL-YSLLKVPSPAP 26 (49)
T ss_pred cHHHHHHHHHHHHH-HHHhCCCCCCC
Confidence 35677888888854 44544444443
No 45
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=26.90 E-value=2.4e+02 Score=20.15 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-h------hhhHHHHHHHHHHHHhhHhhcccc
Q 042215 58 FAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALM-S------FNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 58 f~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvM-T------fN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
.++|++.|..-..-.+.-+ + ..+...+++..+-+.++|.+.-.++ + |-.|--+.++.-..+|.++|+.+.
T Consensus 7 L~~a~~~Ev~~~~~lK~s~--g-f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~ 83 (110)
T PRK09541 7 LGGAILAEVIGTTLMKFSE--G-FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHhc--C-CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566777765543222101 1 1234445666777777777766665 3 555555556666778888888753
No 46
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.72 E-value=3e+02 Score=21.22 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=12.7
Q ss_pred HHHhhhhHHHHHHHHHHHHhhHhh
Q 042215 103 ALMSFNVGVFLAAVAGHSLGFLLF 126 (148)
Q Consensus 103 vvMTfN~~lf~aVv~G~~iGy~~f 126 (148)
....++...++++++|.+.++.++
T Consensus 25 ~~~~~~~~~~l~~l~~~~~~~~~~ 48 (199)
T PF10112_consen 25 SFFGFDHSFLLSLLIGAVAFAVVY 48 (199)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333445555556666665555433
No 47
>PF10699 HAP2-GCS1: Male gamete fusion factor; InterPro: IPR018928 The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative cell-specific protein 1). HAP2 is expressed only in the haploid sperm and is required for efficient guidance of the pollen tube to the ovules. In Arabidopsis the protein is a predicted membrane protein with an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain []. HAP2-GCS1 is found from plants to lower eukaryotes and is necessary for the fusion of the gametes in fertilisation. It is involved in a novel mechanism for gamete fusion where a first species-specific protein binds male and female gamete membranes together after which a second, broadly conserved protein, either directly or indirectly, causes fusion of the two membranes together. The broadly conserved protein is represented by this HAP2-GCS1 domain, conserved from plants to lower eukaryotes []. In Plasmodium berghei the protein is expressed only in male gametocytes and gametes, having a male-specific function during the interaction with female gametes, and being indispensable for parasite fertilisation. The gene in plants and eukaryotes might well have originated from acquisition of plastids from red algae [].
Probab=26.54 E-value=30 Score=21.62 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=14.6
Q ss_pred HHhhHhhccccccCCCCCCCCCCCCCCCC
Q 042215 120 SLGFLLFGSRVFHKSAPPPKTNDLSPMSC 148 (148)
Q Consensus 120 ~iGy~~fg~~~~~~~~~~~~~~~~~~~~~ 148 (148)
+++|-.|... ++.|..||++|
T Consensus 19 Gvs~~~f~~q--------~~~C~~~~gsC 39 (49)
T PF10699_consen 19 GVSYEAFRNQ--------PNFCSSPPGSC 39 (49)
T ss_pred eeCHHHHHhc--------CCccCCCccch
Confidence 3556666553 37789999988
No 48
>PF09773 Meckelin: Meckelin (Transmembrane protein 67); InterPro: IPR019170 Meckelin is a 995-amino acid seven-transmembrane receptor protein of unknown function []. Members of this family are thought to be related to the ciliary basal body. Defects result in Meckel syndrome type 3, [MIM:607361], an autosomal recessive disorder characterised by a combination of renal cysts and variably associated features including developmental anomalies of the central nervous system (typically encephalocele), hepatic ductal dysplasia and cysts, and polydactyly. Joubert syndrome type 6 [MIM:610688] is also a manifestation of certain mutations; it is an autosomal recessive congenital malformation of the cerebellar vermis and brainstem with abnormalities of axonal decussation (crossing in the brain) affecting the corticospinal tract and superior cerebellar peduncles. Individuals with Joubert syndrome have motor and behavioural abnormalities, including an inability to walk due to severe clumsiness and 'mirror' movements, and cognitive and behavioural disturbances [, ].
Probab=25.79 E-value=3.3e+02 Score=26.44 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcc
Q 042215 49 MYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGS 128 (148)
Q Consensus 49 ~~~~s~v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~ 128 (148)
..-+++.++.+|++++-.++...|.||..+... =..+++.++....+++ +.+++.+++|.++=+|+|-.
T Consensus 362 ~~~I~l~Vl~~La~~~al~rt~~w~RR~~~~~i--d~~~l~~fl~~~~~~~---------a~~ff~v~~~~s~y~fiffK 430 (853)
T PF09773_consen 362 VLEIALIVLCVLAFLYALFRTYSWRRRNGSEMI--DGQTLLKFLVYLCGNL---------ANVFFIVTFGFSLYWFIFFK 430 (853)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc--CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh
Confidence 344555666688888888888887765432110 1223333333333322 45666666777666666644
No 49
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=25.34 E-value=93 Score=21.91 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=10.4
Q ss_pred HhhccccccCCCCCCCCCCCC
Q 042215 124 LLFGSRVFHKSAPPPKTNDLS 144 (148)
Q Consensus 124 ~~fg~~~~~~~~~~~~~~~~~ 144 (148)
.+|.+....|.....+++|++
T Consensus 83 l~f~r~~~~~~~~~~~~~Dee 103 (103)
T PF06422_consen 83 LVFKRGKAPKKKKKKKKNDEE 103 (103)
T ss_pred EEEeCCccchhhhhcccCCCC
Confidence 444444444444455556654
No 50
>COG4906 Predicted membrane protein [Function unknown]
Probab=24.70 E-value=2.1e+02 Score=26.85 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhccc
Q 042215 44 GTSTGMYALALVFVFAMGILVEWLSHSRL 72 (148)
Q Consensus 44 ~~s~~~~~~s~v~vf~la~l~E~L~~~r~ 72 (148)
.++.+++...+.++|...+.+|-+...|.
T Consensus 286 ~n~~~~flsvl~Fif~f~F~~e~lalaRq 314 (696)
T COG4906 286 KNSDYGFLSVLLFIFQFSFIYEILALARQ 314 (696)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999885
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.35 E-value=57 Score=24.19 Aligned_cols=6 Identities=33% Similarity=0.384 Sum_probs=1.6
Q ss_pred cccccC
Q 042215 128 SRVFHK 133 (148)
Q Consensus 128 ~~~~~~ 133 (148)
+|..||
T Consensus 89 rR~~Kk 94 (122)
T PF01102_consen 89 RRLRKK 94 (122)
T ss_dssp HHHS--
T ss_pred HHHhcc
Confidence 333444
No 52
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=24.26 E-value=2.8e+02 Score=20.05 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhcccc
Q 042215 58 FAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALM-------SFNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 58 f~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvM-------TfN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
.++|.+.|-.-..-.+..+ -..+...+++-.+-+.++|.+.-.+| .|-+|--+.++....+|.++|+.+.
T Consensus 7 L~lAi~~EV~~~~~lK~s~---gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l 83 (106)
T COG2076 7 LLLAILLEVVGTTLLKYSD---GFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL 83 (106)
T ss_pred HHHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 3566667754443221101 01234445667777777777665444 4777778888888899999998764
No 53
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=23.89 E-value=2.4e+02 Score=19.18 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=23.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 042215 74 KTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGV 111 (148)
Q Consensus 74 ~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~l 111 (148)
.|+++|......+.....++.. ++=|++.|+|.-+
T Consensus 14 tPG~tp~li~a~n~sF~~L~~~---l~~Ll~~t~niHf 48 (75)
T PF08636_consen 14 TPGTTPTLIIATNVSFAALFLV---LLALLFLTYNIHF 48 (75)
T ss_pred CCCCChHHHHHHHHHHHHHHHH---HHHHHHHccCHHH
Confidence 5777666555566666666665 5667777888763
No 54
>PRK10132 hypothetical protein; Provisional
Probab=23.82 E-value=76 Score=22.95 Aligned_cols=18 Identities=39% Similarity=0.209 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhHhhcc
Q 042215 111 VFLAAVAGHSLGFLLFGS 128 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg~ 128 (148)
+-+|..+|+.+|.++..+
T Consensus 90 vgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 90 VGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 556778888999887654
No 55
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.28 E-value=19 Score=25.50 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 042215 83 GIIQTFMHTIRVGLA 97 (148)
Q Consensus 83 ~l~~sll~~~q~~l~ 97 (148)
.=+.++|+.+|..++
T Consensus 64 GEiESlLFaLQAaiG 78 (91)
T TIGR01165 64 GEIESLLFALQAALG 78 (91)
T ss_pred chHHHHHHHHHHHhh
Confidence 357899999999977
No 56
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=22.66 E-value=4.7e+02 Score=22.01 Aligned_cols=76 Identities=7% Similarity=-0.174 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhccccccC----------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhH
Q 042215 55 VFVFAMGILVEWLSHSRLIKTG----------TGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFL 124 (148)
Q Consensus 55 v~vf~la~l~E~L~~~r~~~p~----------~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~ 124 (148)
+++++-...++.+...+..+-| ..+.+...+..++|.+++.+ +.++--..+.+.+.-+.+..+.+.+
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~l---l~~~g~~~~l~~~y~~~~~~~~~~l 253 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIF---LALAAFIAQVGFIFWPFWLIASIGM 253 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHH---HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4555566666767666543211 11123334456667666652 2222222333322222333444666
Q ss_pred hhccccccC
Q 042215 125 LFGSRVFHK 133 (148)
Q Consensus 125 ~fg~~~~~~ 133 (148)
+.+.+.++.
T Consensus 254 ~~~~~~~~~ 262 (294)
T PRK12873 254 QRDILKLFP 262 (294)
T ss_pred HHHHHHhCc
Confidence 666655443
No 57
>COG5547 Small integral membrane protein [Function unknown]
Probab=22.59 E-value=2.4e+02 Score=18.55 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHhhhhH----HHHHHHHHHHHhhHhh
Q 042215 102 LALMSFNVG----VFLAAVAGHSLGFLLF 126 (148)
Q Consensus 102 LvvMTfN~~----lf~aVv~G~~iGy~~f 126 (148)
+..+||-.| +++-+.+|..+|++.=
T Consensus 22 ili~t~GfwKtilviil~~lGv~iGl~~~ 50 (62)
T COG5547 22 ILILTFGFWKTILVIILILLGVYIGLYKK 50 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444 4555677888888753
No 58
>PHA00024 IX minor coat protein
Probab=22.14 E-value=1.4e+02 Score=17.30 Aligned_cols=24 Identities=25% Similarity=0.157 Sum_probs=17.1
Q ss_pred HhhhhHHHHHHHHHHHHhhHhhcc
Q 042215 105 MSFNVGVFLAAVAGHSLGFLLFGS 128 (148)
Q Consensus 105 MTfN~~lf~aVv~G~~iGy~~fg~ 128 (148)
|.+=++.|-|-++|.++||-+-.-
T Consensus 2 ~~~l~~ffgA~ilG~~l~~~Il~F 25 (33)
T PHA00024 2 MSYLGYFFGAYILGWALFYGILVF 25 (33)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888888888865443
No 59
>COG1267 PgpA Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism]
Probab=22.06 E-value=93 Score=24.07 Aligned_cols=33 Identities=24% Similarity=0.100 Sum_probs=24.6
Q ss_pred HHHHHHHhhHhhccccccCCCCCCCCCCCCCCC
Q 042215 115 AVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMS 147 (148)
Q Consensus 115 Vv~G~~iGy~~fg~~~~~~~~~~~~~~~~~~~~ 147 (148)
..++..+|++.|+.....||.+=.+=.+.+.++
T Consensus 106 ~~~~~~~~f~~Fr~~D~~KPg~I~~ld~~~~gg 138 (160)
T COG1267 106 SWIWGSLGFTNFRYFDILKPGPIGKLDKKVHGG 138 (160)
T ss_pred HHHHHHHHHhheeeecccCceeHHhhccccCCC
Confidence 558889999999999999988655544444433
No 60
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=21.94 E-value=3.3e+02 Score=21.64 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 042215 81 AAGIIQTFMHTIRVGLANLVMLALM 105 (148)
Q Consensus 81 ~~~l~~sll~~~q~~l~YlLMLvvM 105 (148)
.+++.+++.|++...++|-|-|+.+
T Consensus 127 ~~~f~qsv~~gf~a~lGfslvmvlf 151 (193)
T COG4657 127 GHNFLQSVVYGFGAALGFSLVMVLF 151 (193)
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHH
Confidence 4678999999999999998876644
No 61
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.77 E-value=5.8e+02 Score=22.81 Aligned_cols=60 Identities=27% Similarity=0.392 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHH
Q 042215 47 TGMYALALVFVFAMGI-LVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLAL---MSFNVGVFLAAV 116 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~-l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvv---MTfN~~lf~aVv 116 (148)
..+|.+-+|++-++++ +.|.++..| .|.+|-+|-++..++-|+|.|.. ..||..+.+|..
T Consensus 297 a~KYgiLFI~LTF~~fflfE~~~~~~----------iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~ 360 (430)
T PF06123_consen 297 AVKYGILFIGLTFLAFFLFELLSKLR----------IHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAAL 360 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 5578877777665554 566666533 67888999999999988888775 567877666543
No 62
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=21.46 E-value=1.4e+02 Score=17.91 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042215 47 TGMYALALVFVFAMGILVE 65 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~l~E 65 (148)
....++.++.+|++|++..
T Consensus 16 RTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 16 RTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3456777788899998864
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=21.20 E-value=3.4e+02 Score=19.82 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhHhhccc
Q 042215 58 FAMGILVEWLSHSRLIK-TGTGNVAAGIIQTFMHTIRVGLANLVMLALM-------SFNVGVFLAAVAGHSLGFLLFGSR 129 (148)
Q Consensus 58 f~la~l~E~L~~~r~~~-p~~~~~~~~l~~sll~~~q~~l~YlLMLvvM-------TfN~~lf~aVv~G~~iGy~~fg~~ 129 (148)
.++|.+.|..-..-.+. .+.+ +....++..+-+.++|.++-.++ .|-.|--+.++.-..+|.++|+.+
T Consensus 7 L~~Ai~~Ev~~t~~LK~s~g~~----~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~ 82 (120)
T PRK10452 7 LALAIATEITGTLSMKWASVSE----GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES 82 (120)
T ss_pred HHHHHHHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566667555432211 1111 12334556666666766665555 344444455555666777777765
No 64
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.99 E-value=82 Score=22.89 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhHhhccccccC
Q 042215 113 LAAVAGHSLGFLLFGSRVFHK 133 (148)
Q Consensus 113 ~aVv~G~~iGy~~fg~~~~~~ 133 (148)
+.+++-..++.+.+.+++.+|
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333455555556666666
No 65
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.84 E-value=81 Score=24.54 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCchhHHHH
Q 042215 51 ALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGII 85 (148)
Q Consensus 51 ~~s~v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~ 85 (148)
+.-++++..++++|-.+|.+|..|+.+..+++.++
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl 132 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVL 132 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeeccc
No 66
>CHL00038 psbL photosystem II protein L
Probab=20.68 E-value=1.5e+02 Score=17.66 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042215 47 TGMYALALVFVFAMGILVEW 66 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~l~E~ 66 (148)
....++.++.||++|++...
T Consensus 15 RTSLy~GLLlifvl~vlfss 34 (38)
T CHL00038 15 RTSLYWGLLLIFVLAVLFSN 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34566777788999987653
No 67
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=20.61 E-value=3.5e+02 Score=19.83 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHh
Q 042215 91 TIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLL 125 (148)
Q Consensus 91 ~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~ 125 (148)
+.|..+.-++-+...|-|.|+.....+...+|-+.
T Consensus 8 ~~a~~~~~~~~~~l~~~~~~ll~~l~~~f~~~~~~ 42 (131)
T PF14340_consen 8 FNAGLVVLLLALALVTGQPWLLAILAVDFALRAFF 42 (131)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 34555555666777777888777777777666444
No 68
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.31 E-value=1.4e+02 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=13.5
Q ss_pred eeEEecCCcCCChHHHHHHH
Q 042215 35 ALVLFKGWPGTSTGMYALAL 54 (148)
Q Consensus 35 ~~lLF~~W~~~s~~~~~~s~ 54 (148)
+.|-+.+|.++++-..++..
T Consensus 3 V~I~~~~~~ie~sl~~~~~~ 22 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALIL 22 (108)
T ss_pred EEEEECCEEEEeeHHHHHHH
Confidence 45778999997765444333
No 69
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=20.17 E-value=1.9e+02 Score=24.58 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHhhHhhcccccc
Q 042215 107 FNVGVFLAAVAGHSLGFLLFGSRVFH 132 (148)
Q Consensus 107 fN~~lf~aVv~G~~iGy~~fg~~~~~ 132 (148)
+...++.+.++|..+|++.|++...|
T Consensus 188 ~~~~~~~~al~ga~LGFL~~N~~PAk 213 (319)
T COG0472 188 GELALICAALAGACLGFLWFNFYPAK 213 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCChhh
Confidence 44558889999999999999987643
No 70
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.08 E-value=89 Score=25.09 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhHhh
Q 042215 111 VFLAAVAGHSLGFLLF 126 (148)
Q Consensus 111 lf~aVv~G~~iGy~~f 126 (148)
+++++++|+.||-+++
T Consensus 25 F~vSm~iGLviG~li~ 40 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIW 40 (197)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666665443
No 71
>PF09997 DUF2238: Predicted membrane protein (DUF2238); InterPro: IPR014509 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins, with several transmembrane segments.
Probab=20.05 E-value=80 Score=24.05 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=25.4
Q ss_pred EecCCcCCC-hHHHHHHHHHHHHHHHHHHHHhhcc
Q 042215 38 LFKGWPGTS-TGMYALALVFVFAMGILVEWLSHSR 71 (148)
Q Consensus 38 LF~~W~~~s-~~~~~~s~v~vf~la~l~E~L~~~r 71 (148)
+-+.+.++. .+.+++++.++..+|.+||.+...-
T Consensus 80 l~r~~~~~~~~~~~~l~v~~~laiSa~YEliEw~~ 114 (143)
T PF09997_consen 80 LIRKWPLRGGGWLFFLAVCVILAISAFYELIEWWA 114 (143)
T ss_pred HHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665 6788888888889999999887643
Done!