Query 042215
Match_columns 148
No_of_seqs 114 out of 702
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 06:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042215.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042215hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 26.2 36 0.0026 17.8 3.1 20 47-66 14-33 (37)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 17.9 1.2E+02 0.0089 21.8 5.9 45 86-130 5-49 (248)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 17.5 28 0.0021 17.2 1.4 11 54-64 13-23 (30)
4 d1v54d_ f.23.1.1 (D:) Mitochon 15.7 31 0.0023 23.5 1.7 31 111-141 78-108 (144)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 13.2 72 0.0053 15.8 2.3 14 111-124 10-23 (32)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 9.8 1.7E+02 0.012 16.8 6.9 46 78-123 36-83 (86)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 9.4 1.2E+02 0.009 22.0 3.5 70 41-110 75-144 (261)
8 d1q90m_ f.23.25.1 (M:) PetM su 7.9 91 0.0066 15.7 1.5 14 115-128 16-29 (34)
9 d2axth1 f.23.33.1 (H:2-65) Pho 7.8 1.2E+02 0.0089 17.6 2.3 27 39-66 21-47 (64)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 6.8 2.6E+02 0.019 16.5 8.5 29 99-128 69-97 (103)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.21 E-value=36 Score=17.81 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042215 47 TGMYALALVFVFAMGILVEW 66 (148)
Q Consensus 47 ~~~~~~s~v~vf~la~l~E~ 66 (148)
....++.++.+|++|++...
T Consensus 14 rtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45667778888999988653
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=17.90 E-value=1.2e+02 Score=21.83 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhcccc
Q 042215 86 QTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRV 130 (148)
Q Consensus 86 ~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~~ 130 (148)
..+|-.+..+..|.+.++..-=+.++.+.+++-.+++.++|.+++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 357788888888988888777777776666666667777776654
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.50 E-value=28 Score=17.25 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 042215 54 LVFVFAMGILV 64 (148)
Q Consensus 54 ~v~vf~la~l~ 64 (148)
++++|++|++.
T Consensus 13 ~i~lfffaiff 23 (30)
T d2axtt1 13 IIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 34556665543
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.67 E-value=31 Score=23.53 Aligned_cols=31 Identities=26% Similarity=0.033 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhHhhccccccCCCCCCCCC
Q 042215 111 VFLAAVAGHSLGFLLFGSRVFHKSAPPPKTN 141 (148)
Q Consensus 111 lf~aVv~G~~iGy~~fg~~~~~~~~~~~~~~ 141 (148)
++..+++|.++|.++|...+.....+.++|.
T Consensus 78 v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~ 108 (144)
T d1v54d_ 78 VVGAAMFFIGFTALLLIWEKHYVYGPIPHTF 108 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3344444555554444444333333344444
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.21 E-value=72 Score=15.78 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhH
Q 042215 111 VFLAAVAGHSLGFL 124 (148)
Q Consensus 111 lf~aVv~G~~iGy~ 124 (148)
+|+|...|.++|-.
T Consensus 10 vfialffgiavgii 23 (32)
T d2e74e1 10 VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe
Confidence 45666667777643
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.83 E-value=1.7e+02 Score=16.77 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=28.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhh
Q 042215 78 GNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAA--VAGHSLGF 123 (148)
Q Consensus 78 ~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aV--v~G~~iGy 123 (148)
++...+++..+.+.+-..++.+..|-..-.|..-+++. ++|.++|.
T Consensus 36 ~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 36 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34455666666666667777777777777777644433 45555554
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.36 E-value=1.2e+02 Score=22.00 Aligned_cols=70 Identities=11% Similarity=0.011 Sum_probs=37.2
Q ss_pred CCcCCChHHHHHHHHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 042215 41 GWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVG 110 (148)
Q Consensus 41 ~W~~~s~~~~~~s~v~vf~la~l~E~L~~~r~~~p~~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~ 110 (148)
+|-+++.-.+..+.+++++..=..+.+-....++|+...|...++..++-......+|.|=-=-|+|=+.
T Consensus 75 Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~ 144 (261)
T d3cx5c2 75 GYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGA 144 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHH
T ss_pred ChhhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHH
Confidence 4555555566666655544444444443333333333335555666666666666777765555555444
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.93 E-value=91 Score=15.68 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=9.9
Q ss_pred HHHHHHHhhHhhcc
Q 042215 115 AVAGHSLGFLLFGS 128 (148)
Q Consensus 115 Vv~G~~iGy~~fg~ 128 (148)
.++|+++|+.+..-
T Consensus 16 tl~glaigfvllrv 29 (34)
T d1q90m_ 16 TLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheee
Confidence 36788888877643
No 9
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.75 E-value=1.2e+02 Score=17.57 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=17.0
Q ss_pred ecCCcCCChHHHHHHHHHHHHHHHHHHH
Q 042215 39 FKGWPGTSTGMYALALVFVFAMGILVEW 66 (148)
Q Consensus 39 F~~W~~~s~~~~~~s~v~vf~la~l~E~ 66 (148)
-++|-++-.-..+.+++.+|++ ++.|.
T Consensus 21 aPGWGTTplMgv~m~Lf~vfl~-iiLei 47 (64)
T d2axth1 21 APGWGTTPLMAVFMGLFLVFLL-IILEI 47 (64)
T ss_dssp CSTTTTHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCcCccHHHHHHHHHHHHHHH-HHHHH
Confidence 4678877666777777776544 44443
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.77 E-value=2.6e+02 Score=16.47 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhHhhcc
Q 042215 99 LVMLALMSFNVGVFLAAVAGHSLGFLLFGS 128 (148)
Q Consensus 99 lLMLvvMTfN~~lf~aVv~G~~iGy~~fg~ 128 (148)
++..+.|-... .++++++|.....+.-.+
T Consensus 69 ~~~~~~~~~Gi-~~~~~~~~~i~~~~~~~~ 97 (103)
T d1r3jc_ 69 CVAVVVMVAGI-TSFGLVTAALATWFVGRE 97 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333343333 334666666665555433
Done!