BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042217
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 188 GVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTS 246
G + +VDM MQI A+DCA + +L+K+ K +A +KKEFD Y P WHC+VG +
Sbjct: 18 GSVVKNVDMTEEMQIDAIDCANQ---ALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRN 74
Query: 247 FGSFVTHSVGGFLYFSMDQKLYIL 270
FGS+VTH F+YF + Q +L
Sbjct: 75 FGSYVTHETKNFIYFYIGQVAILL 98
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + +LEK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 10 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 67 YVTHETRHFIYFYLGQVAILL 87
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + ++EK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 11 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 68 YVTHETKHFIYFYLGQVAILL 88
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 75.9 bits (185), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + +LEK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 65 YVTHETRHFIYFYLGQVAILL 85
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + ++EK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 13 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 69
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 70 YVTHETKHFIYFYLGQVAILL 90
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 75.5 bits (184), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + +LEK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 65 YVTHETRHFIYFYLGQVAILL 85
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFTAK-TLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + +LEK+ + +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 10 IKNADMSEEMQQDAVDCATQ---ALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 67 YVTHETRHFIYFYLGQVAILL 87
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 74.7 bits (182), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DMP +Q A+DCA + +LEK+ K +A +KKEFD + P WHC+VG +FGS
Sbjct: 8 IKNADMPEDLQQDAIDCANQ---ALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 65 YVTHETHHFIYFYIGQVAVLL 85
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 74.7 bits (182), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ AVDCA + ++EK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 65 YVTHETKHFIYFYLGQVAILL 85
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ +V+CA + +LEK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 65 YVTHETKHFIYFYLGQVAILL 85
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 72.8 bits (177), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
I + DM MQ +V+CA + +LEK+ K +A +KKEFD+ Y P WHCIVG +FGS
Sbjct: 4 IKNADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
+VTH F+YF + Q +L
Sbjct: 61 YVTHETKHFIYFYLGQVAILL 81
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTS--F 247
I + DM MQ AVDCA + ++EK+ K +A +KKEFD+ Y P WHCIVG S F
Sbjct: 8 IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNF 64
Query: 248 GSFVTHSVGGFLYFSMDQKLYIL 270
GS+VTH F+YF + Q +L
Sbjct: 65 GSYVTHETKHFIYFYLGQVAILL 87
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 213 DSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSM 263
D+L+K+ + +A T+KK+ D YG WH IVG +FGS+VTH G F+YF +
Sbjct: 35 DALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYI 86
>pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
pdb|4F4Y|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
Length = 362
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 206 DCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVT 252
D K Y+ LEK T K AL L K + Y V S G ++T
Sbjct: 205 DILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVRKSIGRYLT 251
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 206 DCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVT 252
D K Y+ LEK T K AL L K + Y V S G VT
Sbjct: 205 DILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVRKSIGRIVT 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,762,296
Number of Sequences: 62578
Number of extensions: 174358
Number of successful extensions: 304
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 15
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)