Query 042217
Match_columns 270
No_of_seqs 139 out of 542
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 1.2E-32 4.1E-37 214.0 7.7 84 184-270 1-85 (89)
2 4ds1_A Dynein light chain 1, c 100.0 1.4E-31 4.9E-36 211.4 8.6 83 186-270 11-93 (97)
3 1yo3_A Dynein light chain 1; s 100.0 2.3E-31 8E-36 212.2 9.7 83 185-270 15-98 (102)
4 3e9v_A Protein BTG2; B-cell tr 27.5 35 0.0012 27.6 2.6 45 195-240 1-48 (120)
5 1sg7_A Putative cation transpo 21.3 1.5E+02 0.0052 23.3 5.1 47 194-240 27-93 (96)
6 3i1i_A Homoserine O-acetyltran 18.1 34 0.0012 28.2 0.7 34 219-252 128-161 (377)
7 1to0_A Hypothetical UPF0247 pr 18.0 1.1E+02 0.0039 25.6 4.0 32 218-250 83-114 (167)
8 1eci_A Ectatomin; pore-forming 17.1 1.4E+02 0.0049 19.7 3.4 14 220-233 23-36 (37)
9 2b61_A Homoserine O-acetyltran 17.0 52 0.0018 27.4 1.6 35 218-252 134-168 (377)
10 1ns5_A Hypothetical protein YB 16.2 1.2E+02 0.0039 25.3 3.5 30 219-250 80-109 (155)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=99.97 E-value=1.2e-32 Score=213.97 Aligned_cols=84 Identities=42% Similarity=0.789 Sum_probs=77.5
Q ss_pred hccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCC-HHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEE
Q 042217 184 LASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFS 262 (270)
Q Consensus 184 m~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~-eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~ 262 (270)
|...++.|+.+|||++||++|+++|.+|++ +++ +++||++||++||++|||+||||||++|||+|||++++||||+
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~---~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~ 77 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALE---KYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFY 77 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHH---HCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEE
Confidence 345679999999999999999999999964 555 8999999999999999999999999999999999999999999
Q ss_pred eCCEEEEC
Q 042217 263 MDQKLYIL 270 (270)
Q Consensus 263 lg~~afLL 270 (270)
+|+.+|||
T Consensus 78 ~g~~~iLl 85 (89)
T 3rjs_A 78 IGQVAVLL 85 (89)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 99999996
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-31 Score=211.43 Aligned_cols=83 Identities=29% Similarity=0.592 Sum_probs=76.9
Q ss_pred cCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEeCC
Q 042217 186 SCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQ 265 (270)
Q Consensus 186 ~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~lg~ 265 (270)
..++.|+.+||+++||++|+++|.+|++.++ ++++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~--~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~ 88 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQ--LERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGP 88 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETT
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECC
Confidence 4679999999999999999999999975332 38999999999999999999999999999999999999999999999
Q ss_pred EEEEC
Q 042217 266 KLYIL 270 (270)
Q Consensus 266 ~afLL 270 (270)
.+|||
T Consensus 89 ~aiLl 93 (97)
T 4ds1_A 89 LAFLV 93 (97)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=99.97 E-value=2.3e-31 Score=212.24 Aligned_cols=83 Identities=45% Similarity=0.865 Sum_probs=76.3
Q ss_pred ccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCC-HHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEe
Q 042217 185 ASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSM 263 (270)
Q Consensus 185 ~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~-eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~l 263 (270)
.+.++.|+.+||+++||++|+++|.+|++ +++ +++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus 15 ~~~~~~I~~~DM~~emq~~a~~~a~~Al~---k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~ 91 (102)
T 1yo3_A 15 VPRGSVVKNVDMTEEMQIDAIDCANQALQ---KYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYI 91 (102)
T ss_dssp ---CCCEEETTSCHHHHHHHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEE
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEE
Confidence 45678999999999999999999999975 444 89999999999999999999999999999999999999999999
Q ss_pred CCEEEEC
Q 042217 264 DQKLYIL 270 (270)
Q Consensus 264 g~~afLL 270 (270)
|+.+|||
T Consensus 92 g~~aiLl 98 (102)
T 1yo3_A 92 GQVAILL 98 (102)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9999986
No 4
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=27.49 E-value=35 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHhHhhhcCC---HHHHHHHHHHHhcccCCCceE
Q 042217 195 DMPPFMQIHAVDCARKTYDSLEKFT---AKTLALTLKKEFDEVYGPAWH 240 (270)
Q Consensus 195 DMpeEMQ~eAIeiAkeAlk~~eK~~---eKdIAk~IKkeFDKKYGptWH 240 (270)
||-.|.+..|-=++.-+... .+.+ -+..|+.|...|-.+|.++|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~-~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTR-GCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556555444444444332 1223 345689999999999999998
No 5
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=21.30 E-value=1.5e+02 Score=23.33 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=29.9
Q ss_pred CCCCHHHHH----HHHHHHHHHhHh-hhcCCH----------HHHH-----HHHHHHhcccCCCceE
Q 042217 194 VDMPPFMQI----HAVDCARKTYDS-LEKFTA----------KTLA-----LTLKKEFDEVYGPAWH 240 (270)
Q Consensus 194 SDMpeEMQ~----eAIeiAkeAlk~-~eK~~e----------KdIA-----k~IKkeFDKKYGptWH 240 (270)
.|||...+. .+.++..+|++. ++.|.. .++| ..+|+.+.+.-.+.|.
T Consensus 27 ~dLP~sVr~~LP~hAQ~Iy~kAfNsA~eeY~d~~~r~~~~~rEe~AhrvAWaAVK~~Y~K~~~g~W~ 93 (96)
T 1sg7_A 27 SDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEYAKGDDDKWH 93 (96)
T ss_dssp TTSCHHHHTTCCSHHHHHHHHHHHHHHHHCCSSSSSSCHHHHHHHHHHHHHHHHHHHEEECSSSCEE
T ss_pred hhCCHHHHHhCCHHHHHHHHHHHHHHHHHhcChhhccccchhHHHHHHHHHHHHHHHheeCCCCcee
Confidence 477777774 566666666553 333433 4544 5599999886558896
No 6
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=18.14 E-value=34 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCceeeEE
Q 042217 219 TAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVT 252 (270)
Q Consensus 219 ~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VT 252 (270)
+..++|..|...+|.--....+++||.|+|+.+.
T Consensus 128 ~~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia 161 (377)
T 3i1i_A 128 TFLDVARMQCELIKDMGIARLHAVMGPSAGGMIA 161 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHH
Confidence 4566777777666654334566799999998654
No 7
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=18.02 E-value=1.1e+02 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhcccCCCceEEEEcCCceee
Q 042217 218 FTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSF 250 (270)
Q Consensus 218 ~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~ 250 (270)
.+..++|+.|.++.+.-+ +.-..||||++|-.
T Consensus 83 ~sS~~fA~~l~~~~~~G~-~~i~FvIGGa~Gl~ 114 (167)
T 1to0_A 83 KTSEELADTIDKLATYGK-SKVTFVIGGSLGLS 114 (167)
T ss_dssp CCHHHHHHHHHHHHTTTC-CEEEEEECCSSCCC
T ss_pred CCHHHHHHHHHHHHhcCC-ceEEEEEECCCCCC
Confidence 347899999999987633 35677889999954
No 8
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=17.05 E-value=1.4e+02 Score=19.66 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcc
Q 042217 220 AKTLALTLKKEFDE 233 (270)
Q Consensus 220 eKdIAk~IKkeFDK 233 (270)
+.+||.+||++.|+
T Consensus 23 ~g~iat~ik~~c~k 36 (37)
T 1eci_A 23 SGDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhcc
Confidence 57999999999886
No 9
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=16.97 E-value=52 Score=27.42 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEE
Q 042217 218 FTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVT 252 (270)
Q Consensus 218 ~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VT 252 (270)
++..++|+.|...+|.--....+++||.|+|+.+.
T Consensus 134 ~~~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia 168 (377)
T 2b61_A 134 IVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQA 168 (377)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCcceeEEEEEChhHHHH
Confidence 34566777777766654345667799999998764
No 10
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=16.17 E-value=1.2e+02 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCceee
Q 042217 219 TAKTLALTLKKEFDEVYGPAWHCIVGTSFGSF 250 (270)
Q Consensus 219 ~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~ 250 (270)
+..++|+.|.++.+.- +.-..|||+.+|-.
T Consensus 80 sS~~fA~~l~~~~~~g--~~i~FvIGG~~Gl~ 109 (155)
T 1ns5_A 80 DTPQLAAELERWKLDG--RDVSLLIGGPEGLS 109 (155)
T ss_dssp CHHHHHHHHHHHHHHC--SCEEEEECBTTBCC
T ss_pred CHHHHHHHHHHHHhcC--CeEEEEEECCCCCC
Confidence 4789999999998874 56778899999953
Done!