BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042218
(655 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q564K3|CND2_ARATH Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1
SV=1
Length = 671
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/678 (61%), Positives = 504/678 (74%), Gaps = 32/678 (4%)
Query: 1 MAETLSPLRRQKVA-IASRIQSPTSPFFLGSNDDGLERAKARAARAAAIRRKPVTVHYPL 59
M E+L+P +QK A +RIQ+PTSPFFLGSNDD LER +ARAARAAA RR+ V
Sbjct: 1 MDESLTPNPKQKPASTTTRIQAPTSPFFLGSNDDRLEREQARAARAAASRRRSVIFARGS 60
Query: 60 PQHGHSDSCLGKDQILELFHNCIKLASENKINQKNTWELNLIDHLCEIIKVEEENDVETN 119
SD C K QILELF NCIKLASENKINQKNTWELNLIDHLCEIIKVE+EN+ ETN
Sbjct: 61 QPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTETN 120
Query: 120 FQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGQENEQDTRVEDKNAHSVHREGYS 179
FQKASCTLEAGVKIYS+RVDSVHSEAYKVLGGI RAG ++ D + A +V
Sbjct: 121 FQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGD---HEDAAGAVENATNQ 177
Query: 180 KKDIEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYT 239
KK EKK+SPLSTLE SF+ALNVKKFD AFAVDPLYHQTSAQFDEGGAKGLLLNNLGVY
Sbjct: 178 KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYG 237
Query: 240 GCQVLFDSQEVPGKGMSCASQHSMSDTIDLSFASEYIEQMVLNMQAKDEISPTLRTIVNQ 299
GCQVLFDSQE+PGK +S A++H S+TIDLSF E +EQMVLNM+ KDEI P+LR I+NQ
Sbjct: 238 GCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAIINQ 297
Query: 300 YDEDNRRSSDTFSSIQKLVDQVEAVHNNEAE--SDGVAFDDCGTNDFYHDDQSSIVDENL 357
+DE+N+R SDTFS Q+ + + H N+A D +++ GT+ F ++ QS VDEN
Sbjct: 298 FDEENQRPSDTFSCGQQTTESFDISHGNDASYADDDEGYENFGTS-FDYEGQSGDVDENF 356
Query: 358 GG--SDPTFTSY--------LEDPDTDDRFERVDEYLFLNLGFSSKQNAWAGPDHWKYRK 407
G ++P ++++ L+D D+DDR E VD+YLFL+LG SSKQN+WAGPDHWKYRK
Sbjct: 357 GPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWKYRK 416
Query: 408 AKGPVEGSKDDPALEGGSPVRTKKIRGRRQPEPDIDFKKALDEKFPDLFAPPKNPKSLLI 467
KGP PA E S KK R ++Q EP++DF KAL+E+ PD+FAPPKNPK+LL+
Sbjct: 417 TKGP----DVQPASEIKSSPPAKKTRKKKQAEPELDFAKALEEEMPDIFAPPKNPKTLLL 472
Query: 468 PGNRAPSNTTLPEDCHYQPEDLIKLFLLPNVMCLDKRRRRKSS-VERQQTDDHEGFPSWG 526
P +R P T LPEDCHYQPE+LIKLFLLPNVMCL +RRR+ S RQQ DD+E SWG
Sbjct: 473 PASRTPCQTKLPEDCHYQPENLIKLFLLPNVMCLGRRRRKNSGETSRQQPDDYEHGESWG 532
Query: 527 NENMF----DGQFDDGNDPSDVEGSDTLVSQPRQVQKVEVEYDKTSKQVDVQTLKETIWV 582
N+N++ D+ ND SD E ++TL+SQPRQV K++V+YDK SKQVDVQ LKET+W
Sbjct: 533 NDNVYDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQYDKASKQVDVQVLKETLWE 592
Query: 583 HIQESPQMAAQD------PEKTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANE 636
+QES Q QD P ++ SF+ LL+SFP C+AA +DISPHLCFICLLHLANE
Sbjct: 593 CLQESHQPPIQDEEHQQEPPESRSFKVLLASFPDDCQAAERTQDISPHLCFICLLHLANE 652
Query: 637 HSLSIQGCANLDDLSIIL 654
H+LS+ G NLDDL+I L
Sbjct: 653 HNLSLIGSQNLDDLTIHL 670
>sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=2 SV=1
Length = 731
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 205/751 (27%), Positives = 321/751 (42%), Gaps = 150/751 (19%)
Query: 6 SPLRRQKVAIASR-----IQSPTSPFF--LGSNDDGLERAKARAARAAAIRRKPVTVHYP 58
SPL R V ASR + +P +P NDD ER + R +R ++ ++H
Sbjct: 25 SPLER--VPPASRPGKAPLGTPKTPVLEDFPQNDDEKERMQRRRSRVFDLQFSTDSIHLA 82
Query: 59 LPQH----GHSDSCLGKDQILELFHNCIKLASENKINQKNTWELNLIDHLCEIIKVEEEN 114
P + S QI E + CIKL+SENKI KN + L+LID + EI+K +
Sbjct: 83 SPNRNIDVSTTISKFTNTQITEHYSTCIKLSSENKITTKNAFGLHLIDFMSEILK---QK 139
Query: 115 DVE-TNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGQENEQDTRVEDKNAHS- 172
D E TNF+ A+ TL+A KIY++RVD+VH++ Y+VLGG+ + DT + + +HS
Sbjct: 140 DAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGK-------DTPPQGEESHSG 192
Query: 173 ----VHREGYSKKDIEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAK 228
+ E K KK T+E + +NV + D AVDP++ +T+A FDE
Sbjct: 193 DGSTLETERTKKPAKPKKKQSCKTIEQNLSNINVSEADGKCAVDPMFQKTAASFDECSTT 252
Query: 229 GLLLNNLGVYTGCQVLFDSQEVPGKGMSCASQHSMSDTIDLSFASEYIEQMVLNMQAKDE 288
G+ L+ L CQ P + +S + + DL F + L +D
Sbjct: 253 GVFLSTL----HCQDYRSELLFPSDMQTLSSGEPL-ELPDLGFVDMTDLEASLQQCVEDR 307
Query: 289 -ISPTLRTI-VNQYD-EDNRRSSDTFSSIQKLVDQVEAVHNNEAESDGVAFDDCG-TNDF 344
+ P+L ++D E + S K DQV + N EAE D D DF
Sbjct: 308 PLCPSLAGFQFTKWDSETHNESVSALVDKFKKNDQVFDI-NAEAEDDEEDVPDGPLVEDF 366
Query: 345 YHDDQSSIVDENLGGSDPTFTSY---------------LEDPDTDDRFERVDEYLFLNLG 389
+D+ D + G F S+ LED D + + +L + G
Sbjct: 367 VDNDEP---DLSAAGDHEEFRSWKELCQVQSNQEEVISLEDRD----IQVMCSFLSMKPG 419
Query: 390 ----FSSK-QNAWAGPDHWKYRKAKGPVEGSKDDPALEGGSPVRTKKIRGRRQPEPDIDF 444
FS + WAGPDHW++R P + S KK ++ E + D
Sbjct: 420 EYSYFSPRTMKMWAGPDHWRFRPR----------PKQDATSCTEHKKKSAKKDFEINFDD 469
Query: 445 KKALDEKFPDLFAPPKNPKSLLIPGNRAPSNTTLPEDCHYQPEDLIKLFLLPNVMCLDKR 504
D F A KS L N+ TTLP D HY+ ++LI+L L P KR
Sbjct: 470 DIDFDAYFQKTKAATILTKSTL--ENQNWKATTLPTDFHYETDNLIQLHLKPG-----KR 522
Query: 505 RRRKSSVERQQTDDHEGFPSWGNENMFD--------------------------GQFDDG 538
+ ++ +T+ +E + N D G D
Sbjct: 523 SLKMDQDQKAKTEHYEEIEDYDYNNPNDTSNYCPGLQAADSDYEEADDLFADPVGTLDLE 582
Query: 539 NDPSDV----------EGSD-------TLVSQPRQVQKVEVEYDKTSKQVDVQTLKETIW 581
+DP +G D LV++P++V K+E+ Y KT+K++D++ LK+++W
Sbjct: 583 SDPKTTQENGHISPENQGVDITTYQELNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMW 642
Query: 582 VHIQE-------------------SPQMAAQDPEKTVSFRSLLSSFPSGCRAAATIKDIS 622
+ + +P+ A + + + + L + P +++S
Sbjct: 643 SLLTKFSRKEADTEANHTESGQEGAPEEVADEKKLSGLTKDLQTRLP-----PLMAQNLS 697
Query: 623 PHLCFICLLHLANEHSLSIQGCANLDDLSII 653
L F CLLHLANE +L ++G +L D+ ++
Sbjct: 698 IPLAFACLLHLANEKNLKLEGTEDLSDVLVM 728
>sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1
Length = 699
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 189/720 (26%), Positives = 320/720 (44%), Gaps = 116/720 (16%)
Query: 5 LSPLRR-QKVAIASRIQSPTSPFFLGSNDDGLERAKARAARAAAIR----RKPVTVHYPL 59
LSP R Q ++ A+ +PT F SNDD ER R +R ++ P T P
Sbjct: 22 LSPATRPQPISAAA---TPTLLNFT-SNDDERERKLRRMSRVIDLQLSNANSPATAISPA 77
Query: 60 PQHGHSDSC-----LGKDQILELFHNCIKLASENKINQKNTWELNLIDHLCEIIKVEEEN 114
G L QI + + CIKL+ ENKI KN + L+LID++ +I+K
Sbjct: 78 QSRGADTPTSLLPKLNNTQISDHYSTCIKLSQENKITTKNAFGLHLIDYMGDILK---HK 134
Query: 115 DVE-TNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGQENEQDTRVEDKNAHSV 173
D E TNF+ A+ TL+A KIY++RVD+VH++ YKVLGG+ G+E++ E++ +
Sbjct: 135 DSELTNFKVAAGTLDASAKIYAVRVDAVHADVYKVLGGL---GKESQATEDTENQETDTG 191
Query: 174 HREGYSKKDIEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAKGLLLN 233
++G +K+ +++ T+E + ++N + + +DPL+ + +A FDE G+ L+
Sbjct: 192 PQDG--RKNPKRRKCSYKTIERNLNSINRSETERKSEIDPLFQKAAASFDEFSTAGVFLS 249
Query: 234 NLGVYT-GCQVLFDSQEVPGKGMSCASQHSMSDTIDLSFASEYIEQMVLNMQAKDEISPT 292
L ++ ++ FD+ P +S A + S S ++ + L K + P+
Sbjct: 250 TLKCHSYHSELHFDADVKP---LSTAEETEPPSPG--SMDSTELKSLFLQCVEKRPLCPS 304
Query: 293 L---RTIVNQYDEDNRRSSDTFSSIQKLVDQVEAVHNNEAESDGVAFDDCGTNDFYHDDQ 349
L R + D N S +K D V + N E E D V + ++F D
Sbjct: 305 LSGFRFMQWNSDAQNENLSLLMDKFKK-SDHVFDI-NAEVEDDFVESEAPVADEFDAD-- 360
Query: 350 SSIVDENLGGSD-PTFTSYLEDPDTDDRFERVDEY-------LFLNLGFSSKQNAWAGP- 400
V E + D F + E + + ++ + + L L + ++ P
Sbjct: 361 ---VCEGMDAGDIGEFAEHREACRLERKGAQLTQIGNGDIGTMCLQLSSCPGEYSYFSPR 417
Query: 401 --------DHWKYRKAKGPVEGSKDDPALEGGSPVRTKKIRG--RRQPEPDIDFKKALDE 450
+HW++R P + + D + R KK + E DIDF +
Sbjct: 418 TMSMWAGPEHWRFR----PRQKASTDSDQQ-----RVKKAKKVFELNFEDDIDF----EV 464
Query: 451 KFPDLFAPPKNPKSLLIPGNRAPSNTTLPEDCHYQPEDLIKLFLLPNVMCLDKRRRRKSS 510
F A KS L N+ +TTLP D HY P+++ ++ L P K R RK++
Sbjct: 465 HFRKTRAATTLTKSTLESQNK--KSTTLPADFHYDPDNIARMSLRP------KDRIRKTT 516
Query: 511 VER--QQTDDHEGFPSWGNEN-------------------MFDGQ------FDDGNDPSD 543
V+ + +D G + N N F G F N +
Sbjct: 517 VQESVSEPEDDIGDYDYNNPNDTSNFCPALQAADSDDDDGAFLGPESNSAGFSAENQMNI 576
Query: 544 VEGSDTLVSQPRQVQKVEVEYDKTSKQVDVQTLKETIWVHIQESPQMAAQDPEKT----- 598
++ + ++V K+E++Y KT+K++D++ LK ++W + P+ + P
Sbjct: 577 TSYGESNLVAGQKVNKIEIQYAKTAKKMDMKRLKSSMWSLLANCPESQEEMPSSKEEIDA 636
Query: 599 --VSFRSLLSSFPSGCRA---AATIKDISPHLCFICLLHLANEHSLSIQGCANLDDLSII 653
++ + SS G + +++S L F CLLHLANE +L +QG +L D+ I+
Sbjct: 637 ALITDEQVFSSVTHGLQKRLPPVMAQNLSVPLAFACLLHLANEKNLKLQGMDDLSDVMIM 696
>sp|Q15003|CND2_HUMAN Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3
Length = 741
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 189/724 (26%), Positives = 304/724 (41%), Gaps = 146/724 (20%)
Query: 31 NDDGLERAKARAARA-------------AAIRRKPVTVHYPLPQHGHSDSCLGKDQILEL 77
NDD ER + R +R A+ + + + +P+ ++ QI E
Sbjct: 58 NDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNT-------QITEH 110
Query: 78 FHNCIKLASENKINQKNTWELNLIDHLCEIIKVEEENDVE-TNFQKASCTLEAGVKIYSL 136
+ CIKL++ENKI KN + L+LID + EI+K + D E TNF+ A+ TL+A KIY++
Sbjct: 111 YSTCIKLSTENKITTKNAFGLHLIDFMSEILK---QKDTEPTNFKVAAGTLDASTKIYAV 167
Query: 137 RVDSVHSEAYKVLGGINR-AGQENEQDTRVEDKNAHSVHREGYSKKDIEKKLSPLSTLES 195
RVD+VH++ Y+VLGG+ + A E + V D +A + + K +K L T+E
Sbjct: 168 RVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLH--RTIEQ 225
Query: 196 SFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYTGCQVLFDSQEVPGKGM 255
+ LNV + D +DP++ +T+A FDE G+ L+ L CQ P
Sbjct: 226 NINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTL----HCQDYRSELLFPSDVQ 281
Query: 256 SCASQHSMSDTIDLSFASEYIEQMVLNMQAKD-EISPTLRTI-VNQYD-EDNRRSSDTFS 312
+ ++ + + +L + L A+D +I P+L Q+D E + S
Sbjct: 282 TLSTGEPL-ELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALV 340
Query: 313 SIQKLVDQVEAVHNNEAESDGVAFDDCGTNDFYHDDQSSIVDENLGGSDPTFTSYLEDPD 372
K DQV ++ ESD F D D + D + D G F S+ E
Sbjct: 341 DKFKKNDQVFDINAEVDESDCGDFPDGSLGDDF--DANDEPDHTAVGDHEEFRSWKEPCQ 398
Query: 373 T-----------DDRFERVDEYLFLNLG----FSSK-QNAWAGPDHWKYRKAKGPVEGSK 416
D + L + G FS + + WAGPDHW++R + +
Sbjct: 399 VQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRR-----KQ 453
Query: 417 DDPALEGGSPVRTKK---IRGRRQPEPDIDFKKALDEKFPDLFAPPKNPKSLLIPGNRAP 473
D P+ TKK I + D+ F+K K + KS L N+
Sbjct: 454 DAPSQSENKKKSTKKDFEIDFEDDIDFDVYFRKT---KAATILT-----KSTL--ENQNW 503
Query: 474 SNTTLPEDCHYQPEDLIKLFLLPNVMCLDKRRRRKSSVERQQTDDHEGFPSWGNENMFD- 532
TTLP D +Y + L++L L P L + + R +T+ +E + N D
Sbjct: 504 RATTLPTDFNYNVDTLVQLHLKPGTRLL-----KMAQGHRVETEHYEEIEDYDYNNPNDT 558
Query: 533 -------------------------GQFD--------------DGNDPS------DVEGS 547
G D +G+ P G
Sbjct: 559 SNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQQNGDTPEAQGLDITTYGE 618
Query: 548 DTLVSQPRQVQKVEVEYDKTSKQVDVQTLKETIWVHIQ-----------------ESPQM 590
LV++P++V K+E+ Y KT+K++D++ LK+++W + + +
Sbjct: 619 SNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSGKEADAEANHREAGKEAAL 678
Query: 591 AAQDPEKTVS--FRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLD 648
A EK +S + L S P +++S L F CLLHLANE +L ++G +L
Sbjct: 679 AEVADEKMLSGLTKDLQRSLP-----PVMAQNLSIPLAFACLLHLANEKNLKLEGTEDLS 733
Query: 649 DLSI 652
D+ +
Sbjct: 734 DVLV 737
>sp|P38170|CND2_YEAST Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3
Length = 754
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 193/755 (25%), Positives = 302/755 (40%), Gaps = 223/755 (29%)
Query: 78 FHNCIKLASENKINQKNTWELNLIDHLCEIIKVEE-ENDVETNFQKASCTLEAGVKIYSL 136
F IK+A++NKIN +N+W LID+ ++ +++ EN++ NFQKAS TL+ +KIYS
Sbjct: 31 FEEWIKMATDNKINSRNSWNFALIDYFYDLDVLKDGENNI--NFQKASATLDGCIKIYSS 88
Query: 137 RVDSVHSEAYKVLGGINRA---GQENEQDTRV--------------------------ED 167
RVDSV +E K+L G+ + G N D+ D
Sbjct: 89 RVDSVTTETGKLLSGLAQRKTNGASNGDDSNGGNGEGLGGDSDEANIEIDPLTGMPISND 148
Query: 168 KNAHSVHREGYSKKDIEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGA 227
+ ++ R Y++ L T FE + +K+ D +DPL+ + FDEGGA
Sbjct: 149 PDVNNTRRRVYNR--------VLETTLVEFETIKMKELDQELIIDPLFKKALVDFDEGGA 200
Query: 228 KGLLLNNLGVYTGCQVLF-----DSQEV------------------------PGKGM--- 255
K LLLN L + +V+F D+Q V P + +
Sbjct: 201 KSLLLNTLNIDNTARVIFDASIKDTQNVGQGKLQRKEEELIERDSLVDDENEPSQSLIST 260
Query: 256 --------SCASQHSMSDTIDLSFASEYIEQMVLNMQAKDEISPTLRTIVNQYDEDNRRS 307
S S SM D I LS ++I+ + A EIS ++ + N ED ++
Sbjct: 261 RNDSTVNDSVISAPSMEDEI-LSLGMDFIK---FDQIAVCEISGSIEQLRNVV-EDINQA 315
Query: 308 SDTFSSIQKLVD------QVEAVHNNEAESDGVAFD----------DCGTNDFYHDDQSS 351
D ++ D +++A + AE D FD D ++ HD+Q
Sbjct: 316 KDFIENVNNRFDNFLTEEELQAAVPDNAEDDSDGFDMGMQQELCYPDENHDNTSHDEQD- 374
Query: 352 IVDENLGGSDPTFTSYLEDPDTDDRFERVDEYLFLNLGFSSKQNAWAGPDHWKYRKAKGP 411
D+N+ T S E D DE L N W G +HWK R K
Sbjct: 375 --DDNVNS---TTGSIFE----KDLMAYFDENLNRN---------WRGREHWKVRNFKKA 416
Query: 412 VEGSKDDPALEGGSPVRTKKIRGRRQPEP-------------------DIDFKKALDEKF 452
+K+ LE T+ G + +IDF K D+ F
Sbjct: 417 NLVNKESDLLE-----ETRTTIGDTTDKNTTDDKSMDTKKKHKQKKVLEIDFFKT-DDSF 470
Query: 453 PD-LFAPPKNPK-SLLIPGNRAPSNTTLPEDCHYQPEDLIKLFLLP-NVMCLDKRRR--- 506
D +FA K + I + ++ LP+D H+ + + +LF+ P M L R+
Sbjct: 471 EDKVFASKGRTKIDMPIKNRKNDTHYLLPDDFHFSTDRITRLFIKPGQKMSLFSHRKHTR 530
Query: 507 --------RKSSVERQQTDDHEGFPSWGNENMF--------------------------- 531
KS+V +++ P+ +E+ +
Sbjct: 531 GDVSSGLFEKSTVSANHSNN--DIPTIADEHFWADNYERKEQEEKEKEQSKEVGDVVGGA 588
Query: 532 -DGQFDDGNDPSD----VEGSD-------TLVSQPRQ-----VQKVEVEYDKTSKQVDVQ 574
D F+D D D EG+D L Q + +++ +V Y + SK+VDV+
Sbjct: 589 LDNPFEDDMDGVDFNQAFEGTDDNEEASVKLDLQDDEDHKFPIRENKVTYSRVSKKVDVR 648
Query: 575 TLKETIWVHI---------QESPQMAAQDPE--------KTVSFRSLLSSFPSGCRAAAT 617
LK+ +W I +++ + ++ D E K + F ++ S + T
Sbjct: 649 RLKKNVWRSINNLIQEHDSRKNREQSSNDSETHTEDESTKELKFSDIIQGI-SKMYSDDT 707
Query: 618 IKDISPHLCFICLLHLANEHSLSIQGCANLDDLSI 652
+KDIS CFICLLHLANEH L I N +DL +
Sbjct: 708 LKDISTSFCFICLLHLANEHGLQITHTENYNDLIV 742
>sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cnd2 PE=1 SV=1
Length = 742
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 10/231 (4%)
Query: 31 NDDGLERAKARA-ARAAAIRRKPVTVHYPLPQH---GHSDSCLGKDQI--LELFHNCIKL 84
NDD LE+ +A+ +R R+ +H P+ +S Q+ L F IKL
Sbjct: 18 NDDALEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQVPVLSNFEEWIKL 77
Query: 85 ASENKINQKNTWELNLIDHLCEIIKVEEENDVETNFQKASCTLEAGVKIYSLRVDSVHSE 144
A++NKIN NTW LID+ ++ + + D+ NFQKASCTL+ VKIY+ R+DSV +E
Sbjct: 78 ATDNKINSTNTWNFALIDYFHDMSLLRDGEDI--NFQKASCTLDGCVKIYTSRIDSVATE 135
Query: 145 AYKVLGGINRAGQENEQDTRVEDKNAHSVHREGYSKKDIEKKLSPLSTLESSFEALNVKK 204
K+L G+ + +Q ED A + + KK+ ++ + TL FE++ KK
Sbjct: 136 TGKLLSGLANDSKVLQQTEEGED--AENDDEDLQKKKERKRAQRSVKTLVKDFESIRAKK 193
Query: 205 FDAAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYTGCQVLFDSQEVPGKGM 255
F+ + DPL+ + A FDE GAKGLL+N+L V +++FDS + K +
Sbjct: 194 FELECSFDPLFKKMCADFDEDGAKGLLMNHLCVDQHGRIVFDSSDTVIKDL 244
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 128/314 (40%), Gaps = 64/314 (20%)
Query: 391 SSKQNAWAGPDHWKYRKAKGPVEG------------SKDDPALEGGSPVRTKKIRGRRQP 438
S K+N WAGP+HW+ + + + S D+ + S R K RR+
Sbjct: 425 SMKKN-WAGPEHWRIQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKK----RREL 479
Query: 439 EPDIDFKKALDEKFPDLFAPP----KNPKSLLIPGNRAPSNTTLPEDCHYQPEDLIKLFL 494
+ IDF + +D LF P K PKS NR LP+D Y + L++LFL
Sbjct: 480 DNAIDFLQEVD--VEALFTPATSSLKLPKSHWKRHNRC----LLPDDYQYDSKRLLQLFL 533
Query: 495 LPNVMCLDKRRRRKSSVERQQTDDH--------EGFPSWGNENMFDG----QFDDGNDP- 541
P + L + DD GF S G++N+ +G F D + P
Sbjct: 534 KPKMSVLPNADGEGQLQLNKALDDENDLDGIQPHGFDSDGSDNVDEGIPPYGFGDSDSPK 593
Query: 542 --------SDVEGSDTLVSQPRQVQKVEVEYDKTSKQVDVQTLKETIW------------ 581
S D L+ R + + Y K +K+VDV+ LKE +W
Sbjct: 594 QTPLLTPPSSSGFGDNLLLTARLAKPDMLNYAKRAKKVDVRVLKEKLWKCLDLENTIKEN 653
Query: 582 ---VHIQESPQMAAQDPEKTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHS 638
HI+ S + + SF S ++ +KDIS FIC+LHLANEH+
Sbjct: 654 SINSHIEGSEMESEETNMPVKSFFSTVNQLEETYEKKE-LKDISTSFAFICVLHLANEHN 712
Query: 639 LSIQGCANLDDLSI 652
L + + D+ I
Sbjct: 713 LELTSNEDFSDVFI 726
>sp|Q1MPL6|GATB_LAWIP Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gatB
PE=3 SV=1
Length = 477
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 590 MAAQDPEKTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCA 645
+A QD E S R L F + K I+ +L I LLH+ NEH+++IQ C
Sbjct: 312 LAHQDAEILTSSRELADFFEKAVKLYPKPKKIA-NLIKILLLHMLNEHNITIQQCT 366
>sp|C1DCC3|ENO_LARHH Enolase OS=Laribacter hongkongensis (strain HLHK9) GN=eno PE=3 SV=1
Length = 427
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 338 DCGTNDFYHDDQSSIVDENLGGSDPTFTSYLEDPDTDDRFERVDEYLFLNLGFSSKQNAW 397
DC +++FY D + + ENL S FT+YL D Y +++ ++ W
Sbjct: 242 DCASSEFYKDGKYHLAGENLALSSEEFTNYLA--------TLCDNYPIISIEDGMSEHDW 293
Query: 398 AGPDHWK 404
AG WK
Sbjct: 294 AG---WK 297
>sp|Q9LUR0|CNDH2_ARATH Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2
PE=2 SV=1
Length = 683
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 95 TWELNLIDHL-------C--EIIKVEEENDVETNFQKASCTLEAGVKIYSLRVDSVHSEA 145
WE++L + L C EI EE+ + NF +A+ L+ V++YS +V+ +++
Sbjct: 26 NWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAALLLQGSVQVYSKKVEYLYNLV 85
Query: 146 YKVLGGINRAGQENEQDTRVEDKNAHSVHRE 176
+ L +++ ++ EQ ++N S R+
Sbjct: 86 LRTLEFLSKQ-RDQEQSKGTSNENEASSSRQ 115
>sp|O05408|YRPG_BACSU Uncharacterized oxidoreductase YrpG OS=Bacillus subtilis (strain
168) GN=yrpG PE=3 SV=2
Length = 326
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 RRQKVAIASRIQSPTSPFFLGSND-DGLERAKARAARAAAIRRKPVTVHYPLPQHGHSDS 67
RR+KV +A+++ P S G ND GL K R +++R T H L Q H D
Sbjct: 76 RREKVVLATKVYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQ-TDHIELYQMHHIDR 134
Query: 68 CLGKDQILELFHNCIKLASENKINQKN--TWEL 98
D+I E F ++ + I N W L
Sbjct: 135 RTPWDEIWEAFETQVRSGKVDYIGSSNFAGWHL 167
>sp|Q13X07|ENO_BURXL Enolase OS=Burkholderia xenovorans (strain LB400) GN=eno PE=3 SV=1
Length = 427
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 338 DCGTNDFYHDDQSSIVDENLGGSDPTFTSYLEDPDTDDRFERVDEYLFLNLGFSSKQNAW 397
DC ++FYHD + + E L S FT YL + D++ +++ ++ W
Sbjct: 242 DCAASEFYHDGKYQLAGEGLQLSSTEFTDYLAN--------LADKFPIVSIEDGMHESDW 293
Query: 398 AGPDHWK 404
AG WK
Sbjct: 294 AG---WK 297
>sp|C6CRV0|XYNA1_PAESJ Endo-1,4-beta-xylanase A OS=Paenibacillus sp. (strain JDR-2)
GN=xynA1 PE=1 SV=1
Length = 1462
Score = 32.7 bits (73), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 270 SFASEYIEQMVLNMQAKDEISPT--LRTIVNQYDEDNR-RSSDTFSSIQKLVDQVEAVHN 326
+ S+Y+EQ L + + +P+ ++ N Y+EDN+ +++ ++ ++ + D+ A HN
Sbjct: 675 AIGSDYVEQAFLAAREVLDENPSWNIKLYYNDYNEDNQNKATAIYNMVKDINDRYAAAHN 734
Query: 327 NEAESDGVAF 336
+ DGV
Sbjct: 735 GKLLIDGVGM 744
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,541,403
Number of Sequences: 539616
Number of extensions: 11451657
Number of successful extensions: 23127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 23069
Number of HSP's gapped (non-prelim): 74
length of query: 655
length of database: 191,569,459
effective HSP length: 124
effective length of query: 531
effective length of database: 124,657,075
effective search space: 66192906825
effective search space used: 66192906825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)