Query 042218
Match_columns 655
No_of_seqs 208 out of 288
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05786 Cnd2: Condensin compl 100.0 3E-128 5E-133 1122.1 37.4 620 13-655 10-725 (725)
2 KOG2328 Chromosome condensatio 100.0 3E-128 7E-133 1049.9 27.6 607 15-655 12-701 (702)
3 COG5229 LOC7 Chromosome conden 100.0 1.2E-97 3E-102 781.1 19.3 555 74-654 2-651 (662)
4 KOG2359 Uncharacterized conser 79.1 1.5 3.3E-05 49.6 3.0 39 116-154 56-94 (688)
5 PF02616 ScpA_ScpB: ScpA/B pro 77.6 2.4 5.3E-05 43.6 3.9 47 597-653 194-240 (242)
6 PF06278 DUF1032: Protein of u 66.1 9.1 0.0002 44.7 5.4 36 118-153 1-36 (565)
7 PRK00104 scpA segregation and 64.7 15 0.00033 38.2 6.2 67 569-654 171-237 (242)
8 PF04824 Rad21_Rec8: Conserved 60.0 6.8 0.00015 31.6 2.1 31 623-653 20-50 (55)
9 COG1354 scpA Rec8/ScpA/Scc1-li 54.7 10 0.00022 39.5 3.0 47 598-653 191-237 (248)
10 PF06278 DUF1032: Protein of u 51.8 7.7 0.00017 45.3 1.6 41 597-647 493-533 (565)
11 COG4901 Ribosomal protein S25 30.5 36 0.00079 31.0 2.1 45 600-644 46-94 (107)
12 PHA00725 hypothetical protein 20.2 56 0.0012 28.2 1.3 10 623-632 64-73 (81)
No 1
>PF05786 Cnd2: Condensin complex subunit 2; InterPro: IPR022816 This entry represents eukaryotic condensin complex subunit 2 proteins. Included in this group are several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase [].
Probab=100.00 E-value=2.5e-128 Score=1122.12 Aligned_cols=620 Identities=37% Similarity=0.586 Sum_probs=412.1
Q ss_pred HhhhcccCCCCCCCCCCCCccHHHHHHHHHHHHhh-hccCccccC-CC-----CCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 042218 13 VAIASRIQSPTSPFFLGSNDDGLERAKARAARAAA-IRRKPVTVH-YP-----LPQHGHSDSCLGKDQILELFHNCIKLA 85 (655)
Q Consensus 13 ~~~~~~~~~p~~~~~~~~NdDe~ER~~rR~sr~~~-~~r~s~~~~-~~-----~~~~~~~~~~~~~~~i~~~~~~~ikl~ 85 (655)
.++++++++|.+| ++.|||++||++||.+|... +++.....+ .+ +.......|.++..||+++|++|||||
T Consensus 10 ~~~~~~~~~~~~~--~~~ndd~~er~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikl~ 87 (725)
T PF05786_consen 10 SSSKSRLNSPVSP--LPSNDDEAERRQRRASRRSSVLDRQSSTSSSTPSASNQSSSGSASSPMLNKEQILENFEECIKLA 87 (725)
T ss_pred CCCCCCCCCCCCC--CCCCccHHHHHhhccccchhhhhcccccCCCccccccccccccccCcccChHHHHHHHHHHHHHH
Confidence 4567788888877 99999999999995444332 222211111 00 112234568899999999999999999
Q ss_pred hhcccccccccCcchhhHHHHHHhhhccccccchhhhhhcccccceeeeeeechhHHHHHHHHHhhhhhcCCC---Cccc
Q 042218 86 SENKINQKNTWELNLIDHLCEIIKVEEENDVETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGQE---NEQD 162 (655)
Q Consensus 86 teNKIn~kNaw~l~LID~~~~~~~~~~~~~~~~NFq~As~tLda~~KIYs~RVDsv~~et~k~l~gl~r~~~~---~~~~ 162 (655)
++||||+||||+|+|||||++|+..++ .+++|||+||||||||||||||||||||+||||||+||++..+. +.+.
T Consensus 88 ~~NKIn~~Naw~~~lID~~~~~~~~~~--~~~~nFq~As~tLd~~~KIy~~RVDsv~~~t~k~l~~l~~~~~~~~~~~~~ 165 (725)
T PF05786_consen 88 TENKINAKNAWNLALIDYFHDLIDKKD--GDMINFQKASCTLDASVKIYSSRVDSVHTETYKLLSGLARSDQKEAAEEGD 165 (725)
T ss_pred hhCCcccccccchhHHHHHHHHHhccc--cccchHHHhhhheeeeeeEEeeeehHHHHHHHHHHHhcccccccccccccc
Confidence 999999999999999999999987765 36899999999999999999999999999999999999863211 1111
Q ss_pred ccc--ccccccc---cccccCCccccccccCCccchhcccccccccccccccccCccccccccccccCchhhhhhhcCcC
Q 042218 163 TRV--EDKNAHS---VHREGYSKKDIEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAKGLLLNNLGV 237 (655)
Q Consensus 163 ~~~--e~~~~~~---~~~~~~~kk~~~r~~~~~~Tle~~~~~i~~~~~d~~~~vDPlF~k~~a~fDeg~a~glLln~L~~ 237 (655)
++. +.++.++ .+....+|+++|++++..+||+++|++|++|++|++|.|||||+|++|.||||||+|||||||+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~TL~~~~~~i~~k~~d~e~~vDPLFkK~sa~FDEggAkgLLLN~L~i 245 (725)
T PF05786_consen 166 EGEDGEDDDGEGQDDEEDGSKKKKKKKRNRRSESTLEKNFENINVKKFDLEFSVDPLFKKTSADFDEGGAKGLLLNNLSI 245 (725)
T ss_pred ccCCCCCccccccccccccccccccccccCCccchhhcCHHHhCCccccccccCCHHHhhhhcccCCcchHHHHHhhccc
Confidence 111 0111111 11111222233445788999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeecCCCCCCCC--CccccCCCCCCCcchhhhHHHHHHHHhcccccCCCCcchhhhhhhcCCCCcCCCCcccchh
Q 042218 238 YTGCQVLFDSQEVPGKG--MSCASQHSMSDTIDLSFASEYIEQMVLNMQAKDEISPTLRTIVNQYDEDNRRSSDTFSSIQ 315 (655)
Q Consensus 238 ~~~~~v~fDs~~~~~~~--~~~~~~~~~~~~idls~~~~~~~~~l~~~~~~~~IcPsl~~f~~~~d~~~~~~~~~~~~~~ 315 (655)
+++|+|||||++.+.+. .....+......|+++.|+ ..+++.++....|||||.+|. +++++......+....
T Consensus 246 d~~~rlvFDs~~~~~~~~~~~~~~~~~~~~~id~~~l~---~~~~~~~~~~~~IcPsl~~f~--~~d~~~~~~~~~~~~~ 320 (725)
T PF05786_consen 246 DSGCRLVFDSSDVPEESEEETEEEEEEDEEEIDLSSLK---FFPLLSSLEDLEICPSLSGFR--LDDPNKSKDDSFLKAN 320 (725)
T ss_pred CCCceEEecCCccccccccccccccCCccccccHHHhh---hcccccccccCccCcchhCcc--ccCCCCCcCcchhccc
Confidence 99999999999998753 2233345566789999886 334556788899999999997 6665554443221111
Q ss_pred hhhhhhhhhcCC--CccC----CCCCCCCCCCCCC--CC-------CCCcccccccCCCCCCCCCCCCCCCCCchhh---
Q 042218 316 KLVDQVEAVHNN--EAES----DGVAFDDCGTNDF--YH-------DDQSSIVDENLGGSDPTFTSYLEDPDTDDRF--- 377 (655)
Q Consensus 316 ~~~~~~d~~~~~--~~~d----d~~~~~~~~~~df--d~-------d~~~~~~~~~~~~~d~~~~~~~e~~~~~~~~--- 377 (655)
....+.+....+ ++.+ .+..|+...+.++ +. .+.....+...++.............+.+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (725)
T PF05786_consen 321 EDWEDDDESDDNDDDFDDNDNDNDMNFDINADVEDDDDPDNDDDGDGGDADAFEAEDEPVEENERNDRDNTPFDDDDRPV 400 (725)
T ss_pred cccccccccccccccccccccccccCCCCCcccccccccccccCCCCCcccccccchhhhhccccccccccccCcccccc
Confidence 110110000000 0000 0001111111000 00 0000000000000000000000000011111
Q ss_pred --------hhhhHHhhhccCCCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCcccccccCCCCCCCcccCCCCCC
Q 042218 378 --------ERVDEYLFLNLGFSSKQNAWAGPDHWKYRKAKGPVEGSKDDPALEGGSPVRTKKIRGRRQPEPDIDFKKALD 449 (655)
Q Consensus 378 --------~~~~~y~~~~~~~s~~~~~WAGPeHWK~r~~kk~~~~~~~~~~~~~~~~~~~kk~k~kkK~~~~IDF~~~~~ 449 (655)
..++.||+..+ .++||||+|||||+.|+. .....+.......++|||+|.+|.|||+.+.+
T Consensus 401 d~~~~L~~~dl~SYFd~~~-----~knWAGPeHWK~rk~Kk~------~~~~~~~~~~~~~k~KKk~K~~f~IDF~~~~d 469 (725)
T PF05786_consen 401 DMSSSLEYPDLYSYFDEAL-----KKNWAGPEHWKFRKIKKS------KPSKKGDKKPAKPKKKKKKKEPFEIDFFSPDD 469 (725)
T ss_pred hhccccCCcccccccChHH-----HhhccCHHHhCcccccCC------CccccccccccccccccccccccceecCCCcc
Confidence 13445655433 479999999999998851 11111111222233445557899999999876
Q ss_pred -CCCCCCCCCCCCCCcccCCCC--CCCCCCCCCCCCCCChhhhHhhhcCCCccchhhhhc-cccccc--ccccCCCCCCC
Q 042218 450 -EKFPDLFAPPKNPKSLLIPGN--RAPSNTTLPEDCHYQPEDLIKLFLLPNVMCLDKRRR-RKSSVE--RQQTDDHEGFP 523 (655)
Q Consensus 450 -~~~~~lF~~~~~~~s~~l~~~--~~~~~~~LP~D~hy~~~~L~~LflkP~~~~~~~~~~-~~~~~~--~~~~~dy~~~~ 523 (655)
...+.+|++++.++++.++.. +...+++||+|+||++++|++|||||+++|.+...+ ...... ....|+|+ +
T Consensus 470 ~~~~e~lF~~~k~~stl~k~~~~~~~~~~~LLPdD~Hf~s~~L~rLFLKP~~~i~~~~~~~~~~~~~~~~~De~~~a--n 547 (725)
T PF05786_consen 470 EVLEEDLFAPPKSNSTLSKPKKQKKSDSRNLLPDDFHFDSKQLVRLFLKPKIKISRFGSRRDSSSESDGDADEYFWA--N 547 (725)
T ss_pred ccchhhccCCCCcchhhcchhhhccccccCcCCcccCcCHHHHHHHhccCcceecccccccccccCCcccccccccc--c
Confidence 345569999998777777643 334567799999999999999999999988752222 111111 12233333 3
Q ss_pred CC---CCCCCCCCC------------CCCCCC-CCC-------------------CCCCcccccCCcccccccccccccc
Q 042218 524 SW---GNENMFDGQ------------FDDGND-PSD-------------------VEGSDTLVSQPRQVQKVEVEYDKTS 568 (655)
Q Consensus 524 ~~---d~~~f~~~d------------~ddgd~-~~~-------------------~e~~~~Lv~~prkV~ki~V~YAk~A 568 (655)
++ ++.++|+.. |.+..+ .++ ...+++||++||||+||+|+|||+|
T Consensus 548 ~~~~~D~~~~~~~~~~~~~dddd~~~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~prkv~ki~V~YAr~A 627 (725)
T PF05786_consen 548 PNFNDDDDNFCPNGQGADDDDDDDDGFDDADDAFSDFNDGEDGQDANDNEGNDGTTEGGDNLVAAPRKVRKIYVNYARVA 627 (725)
T ss_pred ccccccccccCcccccccCcCccccccCCcccccCCcccccccccccccccccccccchhhhhcccccccccCCCccccc
Confidence 33 223333321 110000 000 1124789999999999999999999
Q ss_pred ccccHHHHHHHHHHHhhcCCCCcc------------CCCcccccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhccc
Q 042218 569 KQVDVQTLKETIWVHIQESPQMAA------------QDPEKTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANE 636 (655)
Q Consensus 569 KkVDVK~LK~n~W~~L~~~~~~~~------------~~e~~~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANE 636 (655)
||||||+||++||++|+....... ..+.+.++|++||+.||. +|+++++++||||||||||||||||
T Consensus 628 KkVDVk~LK~~lW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~v~~~L~~-~~~~~~~~~lS~~~~FiclLHLANE 706 (725)
T PF05786_consen 628 KKVDVKRLKENLWKLLTKEVEESKPEESSQEEESEESEEEGEKSFSEVVKNLPS-MYPKEMAKDLSTSFCFICLLHLANE 706 (725)
T ss_pred cccCHHHHHHHHHHhhcccccccccccccccCCcccCCCCccccHHHHHHHHHh-hcchhhhccccHHHHHHHHHHhccc
Confidence 999999999999999997654311 122467899999999999 9999999999999999999999999
Q ss_pred CCceeccCCCCCCceeecC
Q 042218 637 HSLSIQGCANLDDLSIILP 655 (655)
Q Consensus 637 kgL~i~~~~dl~Dl~I~~~ 655 (655)
|||+|+++++|+||.|++.
T Consensus 707 ~~L~l~~~~~l~Dl~I~~~ 725 (725)
T PF05786_consen 707 KGLKLESQEDLDDLTIRKD 725 (725)
T ss_pred cceEeecCCCchheeEecC
Confidence 9999999999999999974
No 2
>KOG2328 consensus Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.1e-128 Score=1049.94 Aligned_cols=607 Identities=37% Similarity=0.514 Sum_probs=406.9
Q ss_pred hhc--ccCCCCCCCCCCCCccHHHHHHHHHHHHhhhccCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhccccc
Q 042218 15 IAS--RIQSPTSPFFLGSNDDGLERAKARAARAAAIRRKPVTVHYPLPQHGHSDSCLGKDQILELFHNCIKLASENKINQ 92 (655)
Q Consensus 15 ~~~--~~~~p~~~~~~~~NdDe~ER~~rR~sr~~~~~r~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ikl~teNKIn~ 92 (655)
|++ ++|.+..++++|+||||+||+||||++ ||.++.. .+-+..+||+++|++||||||+||||+
T Consensus 12 ~sa~~~~~~~~~~~~~~~Ndd~~er~q~r~a~----r~~~~~~----------~s~~~s~~i~e~f~~cIKLateNKInt 77 (702)
T KOG2328|consen 12 RSAPGSIQEGVSRMLTPFNDDEAERLQARRAP----RLQQHHR----------SSTLESIQINENFENCIKLATENKINT 77 (702)
T ss_pred ccccccCCCcccccccCcCchHHHHHHhhhch----hhhhccC----------CCcchhhhHHHHHHHHHHHhhcCcccc
Confidence 444 455666677789999999999999773 2222221 122455999999999999999999999
Q ss_pred ccccCcchhhHHHHHHhhhccccccchhhhhhcccccceeeeeeechhHHHHHHHHHhhhhhcCCCCccccccccccccc
Q 042218 93 KNTWELNLIDHLCEIIKVEEENDVETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGQENEQDTRVEDKNAHS 172 (655)
Q Consensus 93 kNaw~l~LID~~~~~~~~~~~~~~~~NFq~As~tLda~~KIYs~RVDsv~~et~k~l~gl~r~~~~~~~~~~~e~~~~~~ 172 (655)
||||+|+|||||++|++++++ ++||||||||||||||||||+||||||+|||||||||++.+......++.+|.+.++
T Consensus 78 kNtWnl~LID~f~~i~~~kd~--e~iNFqkAs~TLdacvKIYs~RVDSV~tea~rlL~GL~~~gd~~~~~ed~~G~~~d~ 155 (702)
T KOG2328|consen 78 KNTWNLALIDHFANILKLKDG--ENINFQKASCTLDACVKIYSSRVDSVHTEAMRLLGGLGANGDDIGAAEDDEGPDGDQ 155 (702)
T ss_pred ccchhHHHHHHHHHHHHhhcc--CCcchhhhccccccceeeeeeehhHHHHHHHHHhhcccccccccccccccccccccc
Confidence 999999999999999999886 469999999999999999999999999999999999997654333223333333222
Q ss_pred ccccc--CCccc-cccccCCccchhcccccccccccccccccCccccccccccccCchhhhhhhcCcCCCCceEeecCCC
Q 042218 173 VHREG--YSKKD-IEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYTGCQVLFDSQE 249 (655)
Q Consensus 173 ~~~~~--~~kk~-~~r~~~~~~Tle~~~~~i~~~~~d~~~~vDPlF~k~~a~fDeg~a~glLln~L~~~~~~~v~fDs~~ 249 (655)
+.++. ..||+ ++|+.+..+|++++|++|++|++|++|.+||||+|++++||||||+|||||||.++.+|+|+|||+.
T Consensus 156 a~~E~~~~~~k~~k~kkq~~~~T~~~~f~~l~~kk~D~~~~iDPlf~K~~adfdE~gAkglLln~L~vd~~~~~lfdS~~ 235 (702)
T KOG2328|consen 156 ATGENDATNKKAEKPKKQRKLKTTVTKFNELNVKKLDTALLIDPLFKKTCADFDEGGAKGLLLNNLCVDDSERLLFDSSN 235 (702)
T ss_pred ccccchhhhhcccchhhhcccchhhhhhhhhhhhhhhhhhccChhhhhhcCCccccchhhhhhhcccccCceeEEecccc
Confidence 22232 33333 4466678899999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCccccCCCCCCCcchhhhHHHHHHHHhccccc-CCCCcchhhh-------hhhcCCCCcCCCCcccchhhhhhh
Q 042218 250 V-PGKGMSCASQHSMSDTIDLSFASEYIEQMVLNMQAK-DEISPTLRTI-------VNQYDEDNRRSSDTFSSIQKLVDQ 320 (655)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~idls~~~~~~~~~l~~~~~~-~~IcPsl~~f-------~~~~d~~~~~~~~~~~~~~~~~~~ 320 (655)
. ..+...............++.+... ...|.++ ..||||+... ..+|+++++.++..........++
T Consensus 236 i~~sen~~e~~~vh~l~~~e~s~~~~~----~~~~~~d~~~~~Ps~e~~~~~l~~~~~~~da~n~~s~~~~~~~~~~~~d 311 (702)
T KOG2328|consen 236 IKDSENKTEETQVHTLLNAEMSLGIAK----SLMCVNDMVKICPSLESNLLPLHTIKIQTDAENPISGTSKVDDVVQKED 311 (702)
T ss_pred ccccccCccccccccccchhhhccccc----chhhhHHHHhhchhhhhcCCcccceeeeecccCCCccchhhhhhhhhcc
Confidence 2 1111000000000001111111100 0112222 2467776643 367899999888765555444455
Q ss_pred hhhhcCCCccC--CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCC----------CCCCch----hhhhhhHHh
Q 042218 321 VEAVHNNEAES--DGVAFDDCGTNDFYHDDQSSIVDENLGGSDPTFTSYLE----------DPDTDD----RFERVDEYL 384 (655)
Q Consensus 321 ~d~~~~~~~~d--d~~~~~~~~~~dfd~d~~~~~~~~~~~~~d~~~~~~~e----------~~~~~~----~~~~~~~y~ 384 (655)
.+...+++..+ ++..++...+..++.++.... .+.++ + .+...+.. ...+++ .++++++|.
T Consensus 312 ~d~~~~~~~s~~e~~~~~d~~~e~~~d~d~~~dd-~~~~d-~-~E~e~~~~~~~~evn~~~~~~~~~n~i~~l~~v~~~~ 388 (702)
T KOG2328|consen 312 FDAGLLNEDSMNEDDEFFDIEEEPAPDEDNPPDD-VEVFD-M-NELEELTSPDQMEVNNARRLSMDDNDISTLRPVDGNL 388 (702)
T ss_pred ccccccccccccccchhhhhhccccccCCCCccc-ccccC-c-hhhccCCCcccccccccccccccccchhhcccccccc
Confidence 55444443321 111223322333332211100 00100 0 01111110 112222 233444432
Q ss_pred hhccCCCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCcccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCCc
Q 042218 385 FLNLGFSSKQNAWAGPDHWKYRKAKGPVEGSKDDPALEGGSPVRTKKIRGRRQPEPDIDFKKALDEKFPDLFAPPKNPKS 464 (655)
Q Consensus 385 ~~~~~~s~~~~~WAGPeHWK~r~~kk~~~~~~~~~~~~~~~~~~~kk~k~kkK~~~~IDF~~~~~~~~~~lF~~~~~~~s 464 (655)
.+...-.+..++||||+|||||+.||+ .++.++.......+++|+|+|..++|||....+.+.+.+|+++.+...
T Consensus 389 ~ysyf~~s~~~~WAGPdHWK~r~~kk~-----d~~~qs~~~~~~~t~rkkk~k~~~eiDF~k~lD~e~e~~ft~~~T~i~ 463 (702)
T KOG2328|consen 389 EYSYFSMSQIKNWAGPDHWKFRATKKR-----DVFSQSNTQVDTRTKRKKKQKKDNEIDFAKALDYEVENFFTPGDTTIK 463 (702)
T ss_pred eeeccCHHHhhccCCccceeeecccCC-----ccccccccccCcchhhhhhhhhhhhhhHhhhhhhhhhhhhCCCccccc
Confidence 221110112369999999999999973 322222221112223344456678999999777556678999888887
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhhHhhhcCCCccchhhhhcccccccccccCCCCCCCCCCCCCCCCCCCCCC------
Q 042218 465 LLIPGNRAPSNTTLPEDCHYQPEDLIKLFLLPNVMCLDKRRRRKSSVERQQTDDHEGFPSWGNENMFDGQFDDG------ 538 (655)
Q Consensus 465 ~~l~~~~~~~~~~LP~D~hy~~~~L~~LflkP~~~~~~~~~~~~~~~~~~~~~dy~~~~~~d~~~f~~~d~ddg------ 538 (655)
...+.+|++++++||+||||++++|+||||||+++++.+..+. -.....++|. .++|.+.+++++|+.+
T Consensus 464 ~~~~~~~~~~~~~LP~Df~y~~d~l~klflkP~~kls~~~~g~---~~~~~~~~~~--~~nd~d~~~~~~~~~d~~~ed~ 538 (702)
T KOG2328|consen 464 LPFQKKRNPRRTTLPTDFHYDPDRLFKLFLKPSIKLSKRNAGE---FEKKEGGDLG--SENDIDMIHDGDFDADLFDEDH 538 (702)
T ss_pred cccccccCcccccCCcccccCHHHHHHHhhcchhhhhhhcccc---hhhhcccccc--CCCCcccCCCcccccccccccc
Confidence 7778889999999999999999999999999998886652211 0111222222 2222223333322111
Q ss_pred --------------CCC------------C-------CCCCCcccccCCccccccccccccccccccHHHHHHHHHHHhh
Q 042218 539 --------------NDP------------S-------DVEGSDTLVSQPRQVQKVEVEYDKTSKQVDVQTLKETIWVHIQ 585 (655)
Q Consensus 539 --------------d~~------------~-------~~e~~~~Lv~~prkV~ki~V~YAk~AKkVDVK~LK~n~W~~L~ 585 (655)
..+ + +....+.+|+.|..+.||.|+|||+|||||||+||++||++|+
T Consensus 539 ~d~~vp~~g~~~~~~~~~p~e~~~~n~~~sq~~~~~~~~~~~s~~~~~~d~e~k~~V~yaK~aKkVDvk~LKks~w~~l~ 618 (702)
T KOG2328|consen 539 FDDDVPPVGSIAGIAADQPAEASMMNVDASQAFGTQMDNTCNSTVVAKPDFEGKVIVPYAKRAKKVDVKKLKKSVWSLLQ 618 (702)
T ss_pred ccccCCCccccccccccCcchhhhcCCCcccccccccccccccceecccccccceeeccccccccccHHHHHHHHHHHHH
Confidence 000 0 0011256788898999999999999999999999999999999
Q ss_pred cCCCCccC-------------C-CcccccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCCCCce
Q 042218 586 ESPQMAAQ-------------D-PEKTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLDDLS 651 (655)
Q Consensus 586 ~~~~~~~~-------------~-e~~~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl~Dl~ 651 (655)
........ . ..+..+|+.|++.||. +|+++|.++|||||||||||||||||||+|++++||+||+
T Consensus 619 ~~~~~~~~~~~~~~~~e~~~e~~~~~~~~f~~i~q~l~~-~y~~~~~kdIS~slcFiclLHLANEhnL~L~~tEnl~Dv~ 697 (702)
T KOG2328|consen 619 KLSQNAVPEENIHSEPEEHGEEESKGEKSFSQIYQGLPD-LYTTEMSKDISPSLCFICLLHLANEHNLQLIGTENLSDVQ 697 (702)
T ss_pred hhcccccchhhcccchhhhccccccchhHHHHHHhcchh-hcchhhhcccchhHHHHHHHHhcccccceeeccCchhhhe
Confidence 87654321 1 1356789999999999 9999999999999999999999999999999999999999
Q ss_pred eecC
Q 042218 652 IILP 655 (655)
Q Consensus 652 I~~~ 655 (655)
|+|.
T Consensus 698 Irq~ 701 (702)
T KOG2328|consen 698 IRQG 701 (702)
T ss_pred eecC
Confidence 9973
No 3
>COG5229 LOC7 Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-97 Score=781.08 Aligned_cols=555 Identities=27% Similarity=0.420 Sum_probs=334.0
Q ss_pred HHHHHHHHHHHHhhcccccccccCcchhhHHHHHHhhhccccccchhhhhhcccccceeeeeeechhHHHHHHHHHhhhh
Q 042218 74 ILELFHNCIKLASENKINQKNTWELNLIDHLCEIIKVEEENDVETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGIN 153 (655)
Q Consensus 74 i~~~~~~~ikl~teNKIn~kNaw~l~LID~~~~~~~~~~~~~~~~NFq~As~tLda~~KIYs~RVDsv~~et~k~l~gl~ 153 (655)
++.+|++||||||+||||++|+|+|+|||||++|-..+++ +.|||||||||||||+|||++|||||.+||+|||+||+
T Consensus 2 ~~~nfeeWiK~AtdNKIns~NtWnfaLIDyF~d~d~lrdg--e~INFQKAScTLDGC~KIYssRvDsVstetgkLLsGla 79 (662)
T COG5229 2 SNDNFEEWIKAATDNKINSKNTWNFALIDYFTDIDELRDG--EGINFQKASCTLDGCAKIYSSRVDSVSTETGKLLSGLA 79 (662)
T ss_pred ccccHHHHHHHHhhCccccccchhhHHHHHhhhHHHhccc--CCccceeccccccchhhhhhccchHhhhhHHHHhhccc
Confidence 3678999999999999999999999999999999777665 45999999999999999999999999999999999998
Q ss_pred hcCCCCccccccccccccccccccCCccccccccCCccchhcccccccccccccccccCccccccccccccCchhhhhhh
Q 042218 154 RAGQENEQDTRVEDKNAHSVHREGYSKKDIEKKLSPLSTLESSFEALNVKKFDAAFAVDPLYHQTSAQFDEGGAKGLLLN 233 (655)
Q Consensus 154 r~~~~~~~~~~~e~~~~~~~~~~~~~kk~~~r~~~~~~Tle~~~~~i~~~~~d~~~~vDPlF~k~~a~fDeg~a~glLln 233 (655)
....+..+. ++|++.+.......+++.++|+.+..+|+.+.|+.|.+|+++.++.+||||+|+++.||||||+|||||
T Consensus 80 NDSn~~n~~--~~G~D~E~DD~D~nnt~err~~qR~~kT~l~~fe~I~~kk~~~el~idplfkk~cvDfDE~GAK~LLlN 157 (662)
T COG5229 80 NDSNGGNGE--GLGGDIEIDDPDRNNTEERRKKQRVGKTTLVKFEKITIKKNICELNIDPLFKKRCVDFDEGGAKSLLLN 157 (662)
T ss_pred ccccccccc--ccCcccccCchhhhhHHHHHHHHhhhhhhhhhhheeehhhhhhccccchhhHhhccCcccccchhhhhc
Confidence 433222211 122222222211222332345566788999999999999999999999999999999999999999999
Q ss_pred cCcCCCCceEeecCCCCCC-----CC--CccccCC-CCCCCcchhhhHHHHHHHH--hc----ccccCCCCcchhhhh--
Q 042218 234 NLGVYTGCQVLFDSQEVPG-----KG--MSCASQH-SMSDTIDLSFASEYIEQMV--LN----MQAKDEISPTLRTIV-- 297 (655)
Q Consensus 234 ~L~~~~~~~v~fDs~~~~~-----~~--~~~~~~~-~~~~~idls~~~~~~~~~l--~~----~~~~~~IcPsl~~f~-- 297 (655)
+|.|+..+||+|||+..-. +. ...+.+. +....++---.. .+.+ .. ....--|||||.+=.
T Consensus 158 ~L~iDn~~ri~fdss~IKD~eN~~q~~lq~~~Ee~~~~~s~V~d~~~~---sqslgi~~~~~T~~Dsv~~~PSmeDe~~~ 234 (662)
T COG5229 158 TLNIDNTKRLYFDSSPIKDTENVGQGKLQRKEEELIERDSLVDDLMID---SQSLGISSNDSTVNDSVISAPSMEDEILG 234 (662)
T ss_pred cccccccceEEEecCcccchhhhhhhhhccchhhhhhhhccccccccc---chhccccccccccccccccccchhhhhcc
Confidence 9999999999999985211 00 0000000 000000000000 0000 00 011224677776411
Q ss_pred ------------------------hhcCCCCcCCCCcccchhhh-----hhhhhhhcCCCccCCCCCCCCCCCCCCCCCC
Q 042218 298 ------------------------NQYDEDNRRSSDTFSSIQKL-----VDQVEAVHNNEAESDGVAFDDCGTNDFYHDD 348 (655)
Q Consensus 298 ------------------------~~~d~~~~~~~~~~~~~~~~-----~~~~d~~~~~~~~dd~~~~~~~~~~dfd~d~ 348 (655)
++....+++...+.+..... ..++...+++. .+.+. ..|++++
T Consensus 235 L~m~~iK~l~~~vc~i~gt~~vd~~~~~~d~~a~~lis~s~~e~~~i~~~~ee~a~d~dn------~~~D~--~~~~M~e 306 (662)
T COG5229 235 LGMDFIKVLRMSVCRIEGTVIVDDFKMSMDFPAGLLISPSISEDKEIRDIVEEPAVDNDN------EVSDS--DGFDMGE 306 (662)
T ss_pred cchhHHHHhhhhhhhccceEEEeccchhccccchhccCCCcccchhHHHHHHhhccCCCc------ccccc--ccccccc
Confidence 00001111111111111000 00111111110 01110 1233322
Q ss_pred Cccc-ccccCC--CCCCCCCCCCCCCC-Cchhh-hhhhHHhhhccCCCcccccccCCCCCcccccCCCCCC----CCCCC
Q 042218 349 QSSI-VDENLG--GSDPTFTSYLEDPD-TDDRF-ERVDEYLFLNLGFSSKQNAWAGPDHWKYRKAKGPVEG----SKDDP 419 (655)
Q Consensus 349 ~~~~-~~~~~~--~~d~~~~~~~e~~~-~~~~~-~~~~~y~~~~~~~s~~~~~WAGPeHWK~r~~kk~~~~----~~~~~ 419 (655)
+.+. +..+.. -.++. ...+.+. .+..+ ..+..||+..+ .++||||+|||+++.||.+.. .+.+.
T Consensus 307 ~~~~~~gd~~e~n~~~~~--~~n~N~S~~~s~~~k~vy~yfd~s~-----~knWaGpeHWkvqa~kk~vNk~S~l~eet~ 379 (662)
T COG5229 307 HAGLFSGDNFELNEILPP--SSNQNPSTTGSIFEKDVYKYFDFSY-----FKNWAGPEHWKVQAKKKRVNKESDLLEETR 379 (662)
T ss_pred ccCCCCCccccccccCCc--cccCCccchhhhhhhhHHHHhhHHH-----hhcCCCchhhhHHHhhccccchhhhhhhcc
Confidence 2210 000100 00000 0000000 11111 34788988865 579999999999988875320 01111
Q ss_pred CCC--CC---CCcccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCChhhhHhhhc
Q 042218 420 ALE--GG---SPVRTKKIRGRRQPEPDIDFKKALDEKFPDLFAPPKNPKSLLIPGNRAPSNTTLPEDCHYQPEDLIKLFL 494 (655)
Q Consensus 420 ~~~--~~---~~~~~kk~k~kkK~~~~IDF~~~~~~~~~~lF~~~~~~~s~~l~~~~~~~~~~LP~D~hy~~~~L~~Lfl 494 (655)
+.. .. ....++++ +|.|....|||+...+ .+.+|.|..+........+++..+++||+||||++++|+|||+
T Consensus 380 Tt~ttDk~~~k~~~T~~k-~kqk~~~~iDF~~tvD--~e~~~~pg~t~~d~p~~~~kr~~r~lLPdDf~~~~~rl~rlf~ 456 (662)
T COG5229 380 TTITTDKTDDKSMDTSGK-QKQKEASFIDFTETVD--YEGMLEPGNTLFDPPFIVEKRESRHLLPDDFRLEVERLYRLFV 456 (662)
T ss_pred ccccccccccccccchhh-hhhhhhhhcchhhhcc--hhheecCCccccCcchhhhcccccccCcchhhccHHHHHHHhh
Confidence 111 00 01112222 2334456899998554 4467887666555555556778899999999999999999999
Q ss_pred CCCccchhhhhcc--c---ccccccccCCCCCCCCCCC---CCC-------CCCC----CCCCCCCCCC--CCCcccccC
Q 042218 495 LPNVMCLDKRRRR--K---SSVERQQTDDHEGFPSWGN---ENM-------FDGQ----FDDGNDPSDV--EGSDTLVSQ 553 (655)
Q Consensus 495 kP~~~~~~~~~~~--~---~~~~~~~~~dy~~~~~~d~---~~f-------~~~d----~ddgd~~~~~--e~~~~Lv~~ 553 (655)
||+..++....+. . ....++++-+-....-|.. ++| +-++ |.+.-+..+. .-++++.+.
T Consensus 457 kpKMSl~~~s~Glf~k~~~~a~~~endid~i~~~~f~~d~ed~~~e~ip~~G~G~~DnP~e~~m~~~~~sq~f~DN~~~s 536 (662)
T COG5229 457 KPKMSLFSHSSGLFYKKDQAAAEEENDIDHIPASCFIEDPEDEFVEDIPSQGVGALDNPFEDDMDGVDFSQKFPDNEEAS 536 (662)
T ss_pred ccccccccCCCcchhhhhhhhhhhccCCCCCCccccccCcchhhhccCCccCcCccCCcccccccCCchhhcCCcchhhh
Confidence 9988777553321 0 0001111111100000000 000 0000 0000000000 012455555
Q ss_pred CccccccccccccccccccHHHHHHHHHHHhhcCCCCcc--------------CC-CcccccHHHHHhhCCCCCCchhhh
Q 042218 554 PRQVQKVEVEYDKTSKQVDVQTLKETIWVHIQESPQMAA--------------QD-PEKTVSFRSLLSSFPSGCRAAATI 618 (655)
Q Consensus 554 prkV~ki~V~YAk~AKkVDVK~LK~n~W~~L~~~~~~~~--------------~~-e~~~~~F~~v~~~Lp~~~y~~~~~ 618 (655)
-+.--+-.|+|+|+|||||||+||+++|++|.-.....+ +. .-.+++|.++++.||+ +|..+..
T Consensus 537 vkL~~~D~i~y~k~~KKVdVr~LK~~vw~s~~~~~t~~ds~~N~~~s~SE~~te~~s~~~~kF~~i~~gi~k-~Y~~~el 615 (662)
T COG5229 537 VKLDLQDKIPYRKTPKKVDVRKLKDSVWDSVKGGSTSHDSRKNREQSSSETHTELSSTKELKFSDIFEGIPK-VYNGEEL 615 (662)
T ss_pred hhcccccccccccCcccccHHHHHHHHHHHhcccccccccccccccccccchhhhccccchhHHHHHhcchh-hhCcccc
Confidence 544445679999999999999999999999976543211 01 1246799999999999 9999999
Q ss_pred cCcChHHHHHHHHhhcccCCceeccCCCCCCceeec
Q 042218 619 KDISPHLCFICLLHLANEHSLSIQGCANLDDLSIIL 654 (655)
Q Consensus 619 ~dlS~s~cFICLLHLANEkgL~i~~~~dl~Dl~I~~ 654 (655)
++|||||||||||||||||||.|..++++.|+.|+|
T Consensus 616 KDIStsfcFIclLHLANEhnlqlt~~en~~dv~~~~ 651 (662)
T COG5229 616 KDISTSFCFICLLHLANEHNLQLTAVENDIDVQMLQ 651 (662)
T ss_pred cchhhHHHHHHHHHhhccccceeeecCCccceeecc
Confidence 999999999999999999999999999999999985
No 4
>KOG2359 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.06 E-value=1.5 Score=49.62 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=36.1
Q ss_pred ccchhhhhhcccccceeeeeeechhHHHHHHHHHhhhhh
Q 042218 116 VETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINR 154 (655)
Q Consensus 116 ~~~NFq~As~tLda~~KIYs~RVDsv~~et~k~l~gl~r 154 (655)
...|||+|.-.|.||+-|||-.||-||.=|.++|.=|.+
T Consensus 56 ~~~~f~~a~~~~qgs~~vy~~kv~~~y~l~~~~~~~~~~ 94 (688)
T KOG2359|consen 56 TTYDFQRACRIIQGSCAVYGRKVDHVYELTISVVDLVEN 94 (688)
T ss_pred ccccHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999998853
No 5
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes [].
Probab=77.58 E-value=2.4 Score=43.63 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=40.8
Q ss_pred ccccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCCCCceee
Q 042218 597 KTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLDDLSII 653 (655)
Q Consensus 597 ~~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl~Dl~I~ 653 (655)
+.++|.+++.. +. -.-+-.+|++||+|++.+-+.|.+.+.+.|+.|.
T Consensus 194 ~~~~f~~l~~~-~~---------r~~~V~tFLAlLeL~k~~~i~i~Q~e~fgdI~I~ 240 (242)
T PF02616_consen 194 GWVSFSELFEE-PS---------RSEVVVTFLALLELVKQGKIEIEQEEPFGDIYIE 240 (242)
T ss_pred CceeHHHHcCc-CC---------cCeeHHHHHHHHHHhhcCcEEEEEcCCCCceEEE
Confidence 46899999988 43 1346789999999999999999999999999986
No 6
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=66.12 E-value=9.1 Score=44.70 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=34.4
Q ss_pred chhhhhhcccccceeeeeeechhHHHHHHHHHhhhh
Q 042218 118 TNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGIN 153 (655)
Q Consensus 118 ~NFq~As~tLda~~KIYs~RVDsv~~et~k~l~gl~ 153 (655)
.||..|+-.|.||+=|||=.|+=+|+=+|+.|.-|.
T Consensus 1 ~nFaEAalliQgsa~vYskKVeyly~lv~~~l~~l~ 36 (565)
T PF06278_consen 1 MNFAEAALLIQGSACVYSKKVEYLYSLVYQALDFLS 36 (565)
T ss_pred CCHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 499999999999999999999999999999999886
No 7
>PRK00104 scpA segregation and condensation protein A; Reviewed
Probab=64.71 E-value=15 Score=38.18 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=50.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCCccCCCcccccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCCC
Q 042218 569 KQVDVQTLKETIWVHIQESPQMAAQDPEKTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLD 648 (655)
Q Consensus 569 KkVDVK~LK~n~W~~L~~~~~~~~~~e~~~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl~ 648 (655)
+.+.|..--..|...|... +.++|.+++.. +. . .-+-..|+|||-|++.+-+.|.+.+.+.
T Consensus 171 ~~~sv~~~~~~i~~~l~~~---------~~~~f~~l~~~-~~-~--------~~~v~tFLAlLEL~k~~~i~l~Q~~~f~ 231 (242)
T PRK00104 171 DEYKIEDRMLYILELLESK---------KRLSFSELFKE-PS-K--------NEFVVTFLALLELIKLQEIIVEQEENFG 231 (242)
T ss_pred ccccHHHHHHHHHHHHhhC---------CcEeHHHHhCC-CC-c--------hhhHHHHHHHHHHHhcCeeEEEEcCCCC
Confidence 4566666555566666431 45899999987 65 2 2355679999999999999999999999
Q ss_pred Cceeec
Q 042218 649 DLSIIL 654 (655)
Q Consensus 649 Dl~I~~ 654 (655)
|+.|+.
T Consensus 232 ~I~i~~ 237 (242)
T PRK00104 232 EIYLEK 237 (242)
T ss_pred eEEEEe
Confidence 998863
No 8
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0000228 nuclear chromosome; PDB: 1W1W_E.
Probab=60.05 E-value=6.8 Score=31.56 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.6
Q ss_pred hHHHHHHHHhhcccCCceeccCCCCCCceee
Q 042218 623 PHLCFICLLHLANEHSLSIQGCANLDDLSII 653 (655)
Q Consensus 623 ~s~cFICLLHLANEkgL~i~~~~dl~Dl~I~ 653 (655)
..-+|+.+|+||...-+.+.+.+-+.|+.|+
T Consensus 20 AA~~Fy~~LvL~t~~~I~v~Q~~pygdI~I~ 50 (55)
T PF04824_consen 20 AARAFYELLVLATKGYIDVKQEEPYGDIEIS 50 (55)
T ss_dssp HHHHHHHHHHHHHHTSEEEEESSTT--EEEE
T ss_pred HHHHHHHHHHHhhCCeEEeecCCCCCCeEEe
Confidence 3568999999999999999999999999997
No 9
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]
Probab=54.67 E-value=10 Score=39.50 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=37.3
Q ss_pred cccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCCCCceee
Q 042218 598 TVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLDDLSII 653 (655)
Q Consensus 598 ~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl~Dl~I~ 653 (655)
.+.|.++.. +. .. -.=+..+|++||+|+++.-+.|.+.+.+.|+.|+
T Consensus 191 ~~~~~~~~~--~~-----~~--~~~vv~~FlAlLeL~k~~~v~l~Qee~fgdI~i~ 237 (248)
T COG1354 191 VLRFSDLFS--PE-----ER--KDEVVSTFLALLELVKEGKVELEQEEPFGDIYIR 237 (248)
T ss_pred cccHHHhcc--cc-----cc--hhHHHHHHHHHHHHHhcCceEEEecccccceEEE
Confidence 467888877 33 11 2233479999999999999999999999999986
No 10
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=51.82 E-value=7.7 Score=45.31 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=35.3
Q ss_pred ccccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCC
Q 042218 597 KTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANL 647 (655)
Q Consensus 597 ~~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl 647 (655)
+.++|.+|++.-|. -.|+=+|.++|.|||..++.|...+.+
T Consensus 493 ~~~~f~~vv~~~~~----------~ev~R~fla~LqLaN~~nv~i~~~~~~ 533 (565)
T PF06278_consen 493 EKATFADVVEGKPP----------YEVCRYFLASLQLANDGNVEISQDPGL 533 (565)
T ss_pred CeeeHHHHhCCCCh----------hHHHHHHHHHHHHhcCCCeeeccCCcc
Confidence 35789999999887 378889999999999999999876654
No 11
>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=30.54 E-value=36 Score=30.95 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=33.3
Q ss_pred cHHHHHhhCCCCCC-ch---hhhcCcChHHHHHHHHhhcccCCceeccC
Q 042218 600 SFRSLLSSFPSGCR-AA---ATIKDISPHLCFICLLHLANEHSLSIQGC 644 (655)
Q Consensus 600 ~F~~v~~~Lp~~~y-~~---~~~~dlS~s~cFICLLHLANEkgL~i~~~ 644 (655)
.|..|.+.+|...+ ++ ...-.|+.|+||+.|=||.||-=|++...
T Consensus 46 ~~~ki~KEV~~~r~VTpy~la~r~gI~~SvAr~vLR~LeeeGvv~lvsk 94 (107)
T COG4901 46 LLDKIRKEVPRERVVTPYVLASRYGINGSVARIVLRHLEEEGVVQLVSK 94 (107)
T ss_pred HHHHHHHhcccceeecHHHHHHHhccchHHHHHHHHHHHhCCceeeecc
Confidence 47777788776222 22 23457999999999999999998888654
No 12
>PHA00725 hypothetical protein
Probab=20.23 E-value=56 Score=28.23 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=8.2
Q ss_pred hHHHHHHHHh
Q 042218 623 PHLCFICLLH 632 (655)
Q Consensus 623 ~s~cFICLLH 632 (655)
-+|||||.||
T Consensus 64 ~s~cfl~~f~ 73 (81)
T PHA00725 64 KSFCFLHKFS 73 (81)
T ss_pred hHhHHHHHHH
Confidence 4789999887
Done!