Query 042218
Match_columns 655
No_of_seqs 208 out of 288
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jss_B Uncharacterized protein 15.4 33 0.0011 27.2 -0.0 26 546-571 33-58 (62)
2 1w1w_E SCC1, sister chromatid 9.4 1.5E+02 0.005 26.6 2.3 52 596-653 56-111 (121)
3 2gzo_A UPF0301 protein SO3346; 6.4 1.1E+02 0.0036 29.6 -0.1 26 210-235 15-43 (195)
4 1l6x_B Minimized B-domain of p 5.9 2E+02 0.0069 20.1 1.1 11 625-635 7-17 (34)
5 2gs5_A Conserved hypothetical 5.7 1.2E+02 0.004 29.4 -0.2 26 210-235 27-55 (198)
6 2xzm_8 RPS25E,; ribosome, tran 5.4 3.6E+02 0.012 24.8 2.8 44 600-643 49-97 (143)
7 1zda_A Mini protein A domain, 5.3 2.1E+02 0.0073 20.5 0.9 11 625-635 12-22 (38)
8 1dl2_A Class I alpha-1,2-manno 5.3 2.8E+02 0.0097 30.6 2.5 57 94-153 45-109 (511)
9 2ew0_A Hypothetical protein ac 5.0 1.2E+02 0.004 29.2 -0.7 26 210-235 17-45 (192)
10 2do8_A UPF0301 protein HD_1794 4.9 1.2E+02 0.0042 29.0 -0.7 26 210-235 16-44 (188)
No 1
>2jss_B Uncharacterized protein YER030W; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae}
Probab=15.43 E-value=33 Score=27.15 Aligned_cols=26 Identities=15% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCcccccCCccccccccccccccccc
Q 042218 546 GSDTLVSQPRQVQKVEVEYDKTSKQV 571 (655)
Q Consensus 546 ~~~~Lv~~prkV~ki~V~YAk~AKkV 571 (655)
+++|.|...||-+-..|.|++.|++.
T Consensus 33 d~sNII~~GRRTRGk~IDf~kaa~~l 58 (62)
T 2jss_B 33 DTSNIITSGRRTRGKVIDYKKTAEEL 58 (62)
T ss_dssp CGGGTCCCSSCCCCCCCTTTHHHHHH
T ss_pred chhhcccCCcccCCceecHHHHHHHh
Confidence 35789988888888889999999864
No 2
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57
Probab=9.43 E-value=1.5e+02 Score=26.63 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=38.9
Q ss_pred cccccHHHHHhhC----CCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCCCCceee
Q 042218 596 EKTVSFRSLLSSF----PSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLDDLSII 653 (655)
Q Consensus 596 ~~~~~F~~v~~~L----p~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl~Dl~I~ 653 (655)
.+.++|++|+..- +. -.+..+ -+=||+-||-||.---+.+++.+.+.|+.|+
T Consensus 56 ~~~vsfs~LL~~~~~~~~~-~~tRke-----AAr~FFElLVLaT~d~I~VeQ~epyGdI~I~ 111 (121)
T 1w1w_E 56 EKEVIFTDVLKSQANTEPE-NITKRE-----ASRGFFDILSLATEGCIGLSQTEAFGNIKID 111 (121)
T ss_dssp CSCEEHHHHHHTTC---------CHH-----HHHHHHHHHHHHHHTSEEEEECSTTCCEEEE
T ss_pred CCCccHHHHHhhccccccC-CCCHHH-----HHHHHHHHHHHccCCeeEEecCCCCCceEEe
Confidence 3578999998642 22 112222 3568999999999999999999999999997
No 3
>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1
Probab=6.42 E-value=1.1e+02 Score=29.61 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=21.6
Q ss_pred ccCccccccc---cccccCchhhhhhhcC
Q 042218 210 AVDPLYHQTS---AQFDEGGAKGLLLNNL 235 (655)
Q Consensus 210 ~vDPlF~k~~---a~fDeg~a~glLln~L 235 (655)
..||.|.++- ...++.||.||.||.-
T Consensus 15 l~d~~F~rSVVli~eH~~~Ga~GlIiNrP 43 (195)
T 2gzo_A 15 LDDTFFERTVIYLCEHDEKGAMGLVINKP 43 (195)
T ss_dssp SCSCSSSSEEEEECCCBTTBCCEEECSSC
T ss_pred CCCCCccccEEEEEEeCCCceeEEEecCC
Confidence 4499999984 5589999999999975
No 4
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=5.93 E-value=2e+02 Score=20.07 Aligned_cols=11 Identities=36% Similarity=0.238 Sum_probs=9.1
Q ss_pred HHHHHHHhhcc
Q 042218 625 LCFICLLHLAN 635 (655)
Q Consensus 625 ~cFICLLHLAN 635 (655)
=+|+-+|||-|
T Consensus 7 naFYevLh~~n 17 (34)
T 1l6x_B 7 RRFYEALHDPN 17 (34)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHcCCC
Confidence 47999999865
No 5
>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A
Probab=5.73 E-value=1.2e+02 Score=29.35 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=21.7
Q ss_pred ccCcccccc---ccccccCchhhhhhhcC
Q 042218 210 AVDPLYHQT---SAQFDEGGAKGLLLNNL 235 (655)
Q Consensus 210 ~vDPlF~k~---~a~fDeg~a~glLln~L 235 (655)
..||.|.++ ...+++.||-||.||.-
T Consensus 27 L~d~~F~rSVVli~eH~~~Ga~GlIlNrp 55 (198)
T 2gs5_A 27 MESEDFARSVILIIEHSEYATFGVNLASR 55 (198)
T ss_dssp CCCTTTTTCEEEEEEECSSCEEEEESSCE
T ss_pred CCCCCccccEEEEEEeCCCCeeEEEecCC
Confidence 449999997 35689999999999964
No 6
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=5.42 E-value=3.6e+02 Score=24.81 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=34.0
Q ss_pred cHHHHHhhCCCC--CCchhh---hcCcChHHHHHHHHhhcccCCceecc
Q 042218 600 SFRSLLSSFPSG--CRAAAT---IKDISPHLCFICLLHLANEHSLSIQG 643 (655)
Q Consensus 600 ~F~~v~~~Lp~~--~y~~~~---~~dlS~s~cFICLLHLANEkgL~i~~ 643 (655)
+|..|++.+|+- ++++.. .=.|..|++..+|=||+.+--+++..
T Consensus 49 tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 49 NVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp HHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEe
Confidence 688999999982 234433 34799999999999999987776654
No 7
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=5.30 E-value=2.1e+02 Score=20.45 Aligned_cols=11 Identities=36% Similarity=0.238 Sum_probs=8.7
Q ss_pred HHHHHHHhhcc
Q 042218 625 LCFICLLHLAN 635 (655)
Q Consensus 625 ~cFICLLHLAN 635 (655)
=+|+-+|||-|
T Consensus 12 naFYevLh~~n 22 (38)
T 1zda_A 12 RRFYEALHDPN 22 (38)
T ss_dssp HHHHHHHSCSS
T ss_pred HHHHHHHcCCC
Confidence 47999999865
No 8
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=5.28 E-value=2.8e+02 Score=30.63 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=31.9
Q ss_pred cccCcchhhHHHHHHhhh-----ccccccchhhhhhcccccceeeeeeech---hHHHHHHHHHhhhh
Q 042218 94 NTWELNLIDHLCEIIKVE-----EENDVETNFQKASCTLEAGVKIYSLRVD---SVHSEAYKVLGGIN 153 (655)
Q Consensus 94 Naw~l~LID~~~~~~~~~-----~~~~~~~NFq~As~tLda~~KIYs~RVD---sv~~et~k~l~gl~ 153 (655)
|.|++.|||-|.-|.--. +..+...-|+.|---+... ..+.+| +|..-|.|+||||-
T Consensus 45 ~g~G~TlVDSLDTL~IM~~~~~~~~~gl~~Ef~~A~~~V~~~---l~F~~d~~VsvFETtIR~LGGLL 109 (511)
T 1dl2_A 45 QPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDV---LDFDIDAEVNVFETTIRMLGGLL 109 (511)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHT---CCCCCSSEEEHHHHHHHHHHHHH
T ss_pred CccceeeeecccceEEeccccccccCCcHHHHHHHHHHHHHh---cCCCCCceechhheehhhhhhhh
Confidence 489999999998863220 0000112366665332221 111122 56777999999985
No 9
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=5.00 E-value=1.2e+02 Score=29.19 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=21.3
Q ss_pred ccCcccccc---ccccccCchhhhhhhcC
Q 042218 210 AVDPLYHQT---SAQFDEGGAKGLLLNNL 235 (655)
Q Consensus 210 ~vDPlF~k~---~a~fDeg~a~glLln~L 235 (655)
..||.|.++ ....++.||.||.||.-
T Consensus 17 l~d~~F~rSVIli~eH~~~Ga~GlIlNrP 45 (192)
T 2ew0_A 17 MADDFFANTVIYLARHDEEGAQGIIINRP 45 (192)
T ss_dssp CCCTTTTTCEEEEEEEETTEEEEEECSCE
T ss_pred CCCCCccceEEEEEEeCCCceeEEEecCC
Confidence 349999998 35589999999999864
No 10
>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1
Probab=4.89 E-value=1.2e+02 Score=28.95 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=21.4
Q ss_pred ccCccccccc---cccccCchhhhhhhcC
Q 042218 210 AVDPLYHQTS---AQFDEGGAKGLLLNNL 235 (655)
Q Consensus 210 ~vDPlF~k~~---a~fDeg~a~glLln~L 235 (655)
..||.|.++- ...++.||-||.||.-
T Consensus 16 l~d~~F~rSVVli~eH~~~Ga~GlIlNrp 44 (188)
T 2do8_A 16 MDDEYFDRTVIYICEHNDNGTIGVIINTP 44 (188)
T ss_dssp CTTCCSSCCCCEEEEEETTEEEEECSCCE
T ss_pred CCCCCcCccEEEEEEeCCCCceEEEEeCC
Confidence 3499999984 5589999999999864
Done!