Query 042218
Match_columns 655
No_of_seqs 208 out of 288
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 06:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlka1 g.37.1.1 (A:8-37) Zinc 54.7 1.3 9.3E-05 27.9 0.1 23 124-146 2-24 (30)
2 d1w1we_ a.4.5.57 (E:) Sister c 45.5 4.9 0.00036 31.6 2.3 55 597-653 18-72 (79)
3 d2co8a1 g.39.1.3 (A:44-76) Ned 27.1 2 0.00015 27.9 -2.4 8 627-634 23-30 (33)
4 d2gs5a1 d.310.1.1 (A:1-193) Hy 5.3 62 0.0045 28.6 -0.2 27 209-235 26-55 (193)
5 d1hcua_ a.102.2.1 (A:) Class I 4.8 1.5E+02 0.011 29.8 2.6 60 91-154 43-105 (488)
6 d1dl2a_ a.102.2.1 (A:) Class I 4.8 3.4E+02 0.025 27.2 5.3 61 94-154 45-110 (511)
7 d2f2ab1 a.182.1.2 (B:294-400) 4.4 1.3E+02 0.0097 23.6 1.3 24 68-95 70-93 (107)
8 d1yd9a1 c.50.1.2 (A:6-193) His 4.2 1.8E+02 0.013 24.9 2.3 22 70-91 102-123 (188)
9 d1nxca_ a.102.2.1 (A:) Class I 4.2 1.5E+02 0.011 29.7 1.8 53 94-154 60-116 (467)
10 d2gzoa1 d.310.1.1 (A:1-187) Hy 4.0 90 0.0066 27.2 -0.1 28 209-236 14-44 (187)
No 1
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.72 E-value=1.3 Score=27.92 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=16.9
Q ss_pred hcccccceeeeeeechhHHHHHH
Q 042218 124 SCTLEAGVKIYSLRVDSVHSEAY 146 (655)
Q Consensus 124 s~tLda~~KIYs~RVDsv~~et~ 146 (655)
+|-.+||-||+|.|-=--|-.-|
T Consensus 2 ~cdf~gc~kifsnrqylnhh~ky 24 (30)
T d2dlka1 2 PCDFPGCGRIFSNRQYLNHHKKY 24 (30)
T ss_dssp ECSSTTTCCEESSHHHHHHHHHH
T ss_pred CCCCCCchhhhccHHHHHhHHHH
Confidence 57889999999999654444333
No 2
>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.50 E-value=4.9 Score=31.63 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=38.4
Q ss_pred ccccHHHHHhhCCCCCCchhhhcCcChHHHHHHHHhhcccCCceeccCCCCCCceee
Q 042218 597 KTVSFRSLLSSFPSGCRAAATIKDISPHLCFICLLHLANEHSLSIQGCANLDDLSII 653 (655)
Q Consensus 597 ~~~~F~~v~~~Lp~~~y~~~~~~dlS~s~cFICLLHLANEkgL~i~~~~dl~Dl~I~ 653 (655)
..+.|++++..--. ..+.. ..---..-+|+.+|.||...-+.|++.+-+.|+.|+
T Consensus 18 ~~v~Fsdll~~~~~-~~~~~-~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~ 72 (79)
T d1w1we_ 18 KEVIFTDVLKSQAN-TEPEN-ITKREASRGFFDILSLATEGCIGLSQTEAFGNIKID 72 (79)
T ss_dssp SCEEHHHHHHTTC----------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEE
T ss_pred Cceehhhhhhhhhc-ccccC-CCHHHHHHHHHHHHHHccCCeEEEEcCCCcCceEEe
Confidence 56889999875321 11111 111123568999999999999999999999999986
No 3
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.10 E-value=2 Score=27.93 Aligned_cols=8 Identities=63% Similarity=1.269 Sum_probs=4.6
Q ss_pred HHHHHhhc
Q 042218 627 FICLLHLA 634 (655)
Q Consensus 627 FICLLHLA 634 (655)
|+||+||-
T Consensus 23 fyc~~hlp 30 (33)
T d2co8a1 23 FYCLQHLP 30 (33)
T ss_dssp CEETTTCC
T ss_pred EeeeeccC
Confidence 55666653
No 4
>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=5.26 E-value=62 Score=28.57 Aligned_cols=27 Identities=11% Similarity=0.034 Sum_probs=22.2
Q ss_pred cccCcccccc---ccccccCchhhhhhhcC
Q 042218 209 FAVDPLYHQT---SAQFDEGGAKGLLLNNL 235 (655)
Q Consensus 209 ~~vDPlF~k~---~a~fDeg~a~glLln~L 235 (655)
..-||.|.++ ....++.||-|+.||.-
T Consensus 26 ~l~d~~F~~SVIli~eH~~~Ga~GlIlNkp 55 (193)
T d2gs5a1 26 SMESEDFARSVILIIEHSEYATFGVNLASR 55 (193)
T ss_dssp TCCCTTTTTCEEEEEEECSSCEEEEESSCE
T ss_pred CCCCCCcCccEEEEEEeCCCceEEEEeecc
Confidence 3469999997 46789999999999853
No 5
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]}
Probab=4.79 E-value=1.5e+02 Score=29.75 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=33.9
Q ss_pred ccccccCcchhhHHHHHHhhhccccccchhhhhhcccccceeeeeeech---hHHHHHHHHHhhhhh
Q 042218 91 NQKNTWELNLIDHLCEIIKVEEENDVETNFQKASCTLEAGVKIYSLRVD---SVHSEAYKVLGGINR 154 (655)
Q Consensus 91 n~kNaw~l~LID~~~~~~~~~~~~~~~~NFq~As~tLda~~KIYs~RVD---sv~~et~k~l~gl~r 154 (655)
+.-+-|.+.|||-+.-|.--... .-|+.|---+.-.---....+| +|..-|.|+||||-.
T Consensus 43 d~~~g~g~TlVDsLdTL~iMgl~----~ef~~a~~~v~~i~f~~~~~~~~~vsvFEttIR~LGGLLs 105 (488)
T d1hcua_ 43 DERNGWGSSAIDGLDTAILMGDA----DIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLS 105 (488)
T ss_dssp CTTTTSCHHHHHHHHHHHHTTCH----HHHHHHHHHGGGCCTTCCSSTTCCEEHHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHcCCh----HHHHHHHHHHHhccCCcccccCCccchhhhhHHHHHHHHH
Confidence 34467899999999987433211 1244444333210000111122 789999999999853
No 6
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.76 E-value=3.4e+02 Score=27.18 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=30.8
Q ss_pred cccCcchhhHHHHHHhhhccc-----cccchhhhhhcccccceeeeeeechhHHHHHHHHHhhhhh
Q 042218 94 NTWELNLIDHLCEIIKVEEEN-----DVETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINR 154 (655)
Q Consensus 94 Naw~l~LID~~~~~~~~~~~~-----~~~~NFq~As~tLda~~KIYs~RVDsv~~et~k~l~gl~r 154 (655)
..|++.|||-+.-|.--.+.. +-..-|+.|---+....+.=...-=+|..-|.|+||||-.
T Consensus 45 ~~~g~TlvDsLdTL~iMG~~~~~~~~~l~~e~~~~~~~v~~~~~f~~~~~v~vFEttIR~LGGLLs 110 (511)
T d1dl2a_ 45 QPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLS 110 (511)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHTCCCCCSSEEEHHHHHHHHHHHHHH
T ss_pred ccccchHHHhHHHHHHcCCCcccchhhHHHHHHHHHHHHHhccCCCcCCccchheeeHHHHHHHHH
Confidence 348999999998874321100 0001244442211111110001123778889999999853
No 7
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=4.36 E-value=1.3e+02 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccc
Q 042218 68 CLGKDQILELFHNCIKLASENKINQKNT 95 (655)
Q Consensus 68 ~~~~~~i~~~~~~~ikl~teNKIn~kNa 95 (655)
.+++.++. +.|+|..+||||.+.|
T Consensus 70 ~i~~~~la----~Li~lv~~g~Is~~~a 93 (107)
T d2f2ab1 70 KLTPENLA----GMIKLIEDGTMSSKIA 93 (107)
T ss_dssp SCCHHHHH----HHHHHHTTSSSCHHHH
T ss_pred CcCHHHHH----HHHHHHHcCCccHHHH
Confidence 46665554 5689999999999877
No 8
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.20 E-value=1.8e+02 Score=24.89 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHhhcccc
Q 042218 70 GKDQILELFHNCIKLASENKIN 91 (655)
Q Consensus 70 ~~~~i~~~~~~~ikl~teNKIn 91 (655)
+...|...|.+|+++|.+++|+
T Consensus 102 ~~~~L~~~~~~~L~~a~~~~~~ 123 (188)
T d1yd9a1 102 CEELLEKTVKNCLALADDRKLK 123 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999876
No 9
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.19 E-value=1.5e+02 Score=29.69 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=30.2
Q ss_pred cccCcchhhHHHHHHhhhccccccchhhhhhc----ccccceeeeeeechhHHHHHHHHHhhhhh
Q 042218 94 NTWELNLIDHLCEIIKVEEENDVETNFQKASC----TLEAGVKIYSLRVDSVHSEAYKVLGGINR 154 (655)
Q Consensus 94 Naw~l~LID~~~~~~~~~~~~~~~~NFq~As~----tLda~~KIYs~RVDsv~~et~k~l~gl~r 154 (655)
|-|++.|||-+.-|.--+-. .-|+.|-- +|+-. +. ..| +|..-|.|+||||-.
T Consensus 60 ~~~g~tlvDsLdTL~imgl~----~ef~~a~~~v~~~~~f~-~~--~~v-~vFEt~iR~LGGLls 116 (467)
T d1nxca_ 60 NIKGATIVDALDTLFIMGMK----TEFQEAKSWIKKYLDFN-VN--AEV-SVFEVNIRFVGGLLS 116 (467)
T ss_dssp TCCCHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCCCC-CS--SEE-EHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCC-CC--Ccc-chhhhhhHhhhhHHH
Confidence 56889999999987432211 11443321 12211 11 122 677888999999853
No 10
>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]}
Probab=4.00 E-value=90 Score=27.18 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=22.9
Q ss_pred cccCcccccc---ccccccCchhhhhhhcCc
Q 042218 209 FAVDPLYHQT---SAQFDEGGAKGLLLNNLG 236 (655)
Q Consensus 209 ~~vDPlF~k~---~a~fDeg~a~glLln~L~ 236 (655)
..-||.|.|+ ....++.||-||.||.-.
T Consensus 14 ~l~d~~F~~SVIli~eh~~~Ga~GlIlNkp~ 44 (187)
T d2gzoa1 14 SLDDTFFERTVIYLCEHDEKGAMGLVINKPL 44 (187)
T ss_dssp TSCSCSSSSEEEEECCCBTTBCCEEECSSCC
T ss_pred CCCCCCcCceEEEEEEeCCCceEEEEecCcc
Confidence 3568999998 467899999999999653
Done!