BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042221
         (305 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  187 bits (476), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 152/284 (53%), Positives = 175/284 (61%), Gaps = 45/284 (15%)

Query: 2   SGYVHQLLGPS--ELQLQPQ--------------------HHQADSADKDIDERSHDQSA 39
           S Y H L  P     QLQPQ                        DS + D   + H Q  
Sbjct: 12  SRYFHNLFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDHHQQG 71

Query: 40  AAGGNNTTSSGSGSGGGGGAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGA 99
               +  TSS +        G+RPRGRP GS+NK KPPIIVTRD+PNALRSHVLE+S GA
Sbjct: 72  RPDSDPNTSSSA-------PGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGA 124

Query: 100 DIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFE 159
           DIV+SVSTYARRRGRGV +L G G V+NVTLRQP       +   ++GG   +TLHGRFE
Sbjct: 125 DIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQP---VTPGNGGGVSGGGGVVTLHGRFE 181

Query: 160 ILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDR 219
           ILSLTGT LPPPAPPGAGGL+I+LAGGQGQVVGGSVV PL AS  V+LMAASF+NAV++R
Sbjct: 182 ILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFER 241

Query: 220 LPL-------ELQEDADSTTPP-----PAASQSSGVTGGCGQLG 251
           LP+                 PP     P+AS  SGVT G GQLG
Sbjct: 242 LPIEEEEEEGGGGGGGGGGGPPQMQQAPSASPPSGVT-GQGQLG 284


>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=glmU PE=3 SV=1
          Length = 621

 Score = 37.7 bits (86), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 87  ALRSHVLEISSGADIVDSVSTYARRRGRGV-CILSGAGAVTNVTLRQPPAGAGGSSSASI 145
           +LR + L +  G D+   +  +AR++      +LS  G+++  TLR             +
Sbjct: 467 SLRVYPLRLLPGQDLKQELERFARQQPLQAGFVLSAVGSLSQATLR-------------L 513

Query: 146 AGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVV-GPLTASGT 204
           A    +  L  R EIL+L+G+  P         L + +A  QG+  GG +  G L  +  
Sbjct: 514 ADQTEDYLLSERLEILALSGSLCP-----DGVHLHLAVADAQGRTWGGHLRPGCLIYTTA 568

Query: 205 VVLMAASFANAVYDR-------LPLELQEDADSTTPPPAASQSSGV 243
            +++A S       +       L L +++ A++T P P  +  +GV
Sbjct: 569 EIVLADSLEYRFSRQPDPATGYLELHIEKVAEATPPSPQRADGTGV 614


>sp|Q8BPN8|DMXL2_MOUSE DmX-like protein 2 OS=Mus musculus GN=Dmxl2 PE=1 SV=3
          Length = 3032

 Score = 36.6 bits (83), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 14/90 (15%)

Query: 4   YVHQLLGPSELQLQPQHHQADSADKDIDERSHDQSAAA---------GGNNTTSSGSGSG 54
           ++HQL   SE QL    H++D AD++ +ERS D+               +  + +G+GS 
Sbjct: 407 FMHQLRKLSEKQLD---HESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSS 463

Query: 55  GGGGAGRR--PRGRPAGSRNKPKPPIIVTR 82
                 R   PR  P  S + P P +++ R
Sbjct: 464 EHEDGEREGSPRTHPRPSISMPLPTVLLDR 493


>sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=2 SV=3
          Length = 1358

 Score = 34.7 bits (78), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 16 LQPQHHQADSADKDIDERSHDQSAAAGGNNTTSSGSGSGGGGGAGRRPRGRPAGSRNKPK 75
          ++P     ++  +  +  S    ++ G +NTT + SGSG  G AG  P   PA  + +P 
Sbjct: 2  IEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGEAG--PASGPAQEKKEPP 59

Query: 76 P-PIIVTRDTPNALRSHVLEISSG 98
            P+    + P  L   + E SSG
Sbjct: 60 SGPLQEMEELPTDLLQDMEEPSSG 83


>sp|O80831|BAM7_ARATH Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2
          Length = 691

 Score = 32.0 bits (71), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 1   MSGYVHQLLGPSELQLQPQHHQADSADKDIDERSHDQSAAAGG--------NNTTSSGSG 52
           M+  +H+LLG SE     +       + D D R+ D+ AA+G           +     G
Sbjct: 1   MATDMHKLLGTSEEDDDEEMDMDVKEEDDGDRRNRDKHAASGSSSNDEFMFQQSMQDQVG 60

Query: 53  SGGGGGAGR-RPRGRPAGSRNKPKPPIIVTRDTPNALRSH-VLEISSGADIVDSVSTYAR 110
           + GGGG+ R RP      ++ + +    +T      LR H    +   ADI D ++  AR
Sbjct: 61  TPGGGGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAR 120

Query: 111 RRGRGV 116
             G  V
Sbjct: 121 EAGWVV 126


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.132    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,509,260
Number of Sequences: 539616
Number of extensions: 6810286
Number of successful extensions: 49244
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 360
Number of HSP's that attempted gapping in prelim test: 41280
Number of HSP's gapped (non-prelim): 6266
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)