Query 042221
Match_columns 305
No_of_seqs 239 out of 510
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt4_A Hypothetical protein PH 100.0 2.6E-30 8.7E-35 218.1 11.5 121 89-221 10-130 (143)
2 2hx0_A Putative DNA-binding pr 100.0 1.9E-29 6.5E-34 216.1 16.6 128 79-224 9-137 (154)
3 2p6y_A Hypothetical protein VC 100.0 3.8E-29 1.3E-33 211.5 16.3 119 88-224 2-121 (142)
4 2h6l_A Hypothetical protein; N 100.0 6E-30 2E-34 216.5 10.2 123 89-224 10-132 (146)
5 3htn_A Putative DNA binding pr 100.0 3.9E-29 1.3E-33 213.2 11.7 124 89-224 16-139 (149)
6 3hwu_A Putative DNA-binding pr 99.9 1E-26 3.4E-31 197.7 11.8 124 89-224 13-136 (147)
7 2ezd_A High mobility group pro 97.5 4.2E-05 1.4E-09 48.2 2.2 17 59-75 3-19 (26)
8 1xv2_A ALDC, hypothetical prot 52.3 45 0.0015 30.2 7.8 112 98-224 96-216 (237)
9 4i95_A Putative uncharacterize 37.0 27 0.00093 29.8 3.6 57 115-185 37-100 (142)
10 1t3g_A X-linked interleukin-1 27.5 42 0.0014 27.8 3.2 27 95-121 51-77 (159)
11 1fyx_A TOLL-like receptor 2; b 21.0 53 0.0018 26.7 2.5 27 95-121 44-70 (149)
No 1
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.6e-30 Score=218.12 Aligned_cols=121 Identities=18% Similarity=0.324 Sum_probs=111.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221 89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL 168 (305)
Q Consensus 89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis 168 (305)
|+|++||++||||+++|.+||+++++..|+++++|+|++|+||+++...+ .|..++++|+|||+||+|||+
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~---------~~~~~~~~g~~EIlsl~Gti~ 80 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKK---------EYKVIPLKGSYELISLIGNVS 80 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTT---------EEEEEECCSEEEEEEEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccC---------cceeEeecCCEEEEEeEEEEE
Confidence 79999999999999999999999988878889999999999999987654 578899999999999999999
Q ss_pred CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeecc
Q 042221 169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLP 221 (305)
Q Consensus 169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp 221 (305)
+.++ +++.||||+|+|.||+|+||||+..+ .. ++||++.+|.+..|+|+|
T Consensus 81 ~~~g-~p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~ 130 (143)
T 2dt4_A 81 LKDG-EPFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP 130 (143)
T ss_dssp EETT-EEEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred CCCC-CceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence 9755 45899999999999999999999877 55 899999999999999999
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.96 E-value=1.9e-29 Score=216.11 Aligned_cols=128 Identities=22% Similarity=0.380 Sum_probs=113.2
Q ss_pred eeecCCCCCceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeee
Q 042221 79 IVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGR-GVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGR 157 (305)
Q Consensus 79 ~it~~s~~~mr~hVLrL~~GeDIvesI~~fArr~~~-aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGr 157 (305)
+++.++++.+|+|++||++||||+++|.+||+++++ ++||++++|+|++|+||+++... .++++|+
T Consensus 9 ~~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-------------~~~~~g~ 75 (154)
T 2hx0_A 9 TVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-------------TTSLTGT 75 (154)
T ss_dssp ---CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-------------CEEEEEE
T ss_pred eeccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-------------cEecCCc
Confidence 345678899999999999999999999999998865 78888999999999999998642 6789999
Q ss_pred EEEEEeeeccCCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221 158 FEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL 224 (305)
Q Consensus 158 FEILSLsGtisp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~ 224 (305)
|||+||+|||++. ..||||+|++.||+|+||||+..+++..++||++..|....|+|.|+++
T Consensus 76 ~EIlsl~Gti~~~-----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 137 (154)
T 2hx0_A 76 FEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI 137 (154)
T ss_dssp EEEEEEEEEEETT-----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred EEEEEeeeeEeCC-----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence 9999999999985 5999999999999999999997555457999999999999999998764
No 3
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.96 E-value=3.8e-29 Score=211.46 Aligned_cols=119 Identities=23% Similarity=0.299 Sum_probs=107.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeec
Q 042221 88 LRSHVLEISSGADIVDSVSTYARRRGR-GVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGT 166 (305)
Q Consensus 88 mr~hVLrL~~GeDIvesI~~fArr~~~-aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGt 166 (305)
||+|++||++||||+++|.+||+++++ ++||++++|+|++|+||+++... .++++|+|||+||+||
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-------------~~~~~g~~EIlsl~Gt 68 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-------------TLQVSAPFEILSLSGT 68 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-------------EEEECSCEEEEEEEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-------------cEecCCcEEEEEeEEE
Confidence 899999999999999999999999876 78888999999999999998642 6789999999999999
Q ss_pred cCCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221 167 SLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL 224 (305)
Q Consensus 167 isp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~ 224 (305)
|++. ..||||+++|.||+|+||||++.+++..++||++..|.+..|+|+|+++
T Consensus 69 i~~~-----~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 121 (142)
T 2p6y_A 69 LTYQ-----HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN 121 (142)
T ss_dssp ECSS-----CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred EeCC-----CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence 9985 5999999999999999999997554567999999999999999999764
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.96 E-value=6e-30 Score=216.52 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=112.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221 89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL 168 (305)
Q Consensus 89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis 168 (305)
++|++||++||||+++|.+||+++++..|+|+++|+|++|+||+++...+ .|..++++|+|||+||+|||+
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~---------~y~~~~~~g~~EIlsl~Gti~ 80 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKK---------EYVKKELMEPLEILSLSGNVS 80 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTT---------EEEEEEECSCEEEEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCc---------ceeEEEecCcEEEEEeEEEEE
Confidence 69999999999999999999999988767779999999999999987654 578899999999999999999
Q ss_pred CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221 169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL 224 (305)
Q Consensus 169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~ 224 (305)
+.++ .++.||||+|+ .||+|+||||++.+| .++||++.+|.+..|+|+|+++
T Consensus 81 ~~dg-~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 81 MKDS-KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EETT-EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred CCCC-CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 9755 45899999999 999999999998886 5999999999999999999765
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.96 E-value=3.9e-29 Score=213.18 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=112.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221 89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL 168 (305)
Q Consensus 89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis 168 (305)
|.|++||++||||+++|.+||+++++..|+++++|+|++|+||+++...+ .|..++++|+|||+||+|||+
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~---------~y~~~~~~g~~EI~sl~Gti~ 86 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTK---------AYDDKTFREQMEISNLTGNIS 86 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTC---------CEEEEEECSCEEEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcc---------cceeEEecCceEEEEeEEEEE
Confidence 89999999999999999999999999888889999999999999987654 588999999999999999999
Q ss_pred CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221 169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL 224 (305)
Q Consensus 169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~ 224 (305)
+.++ .++.|||++|++.+|+|+||||+.+.| ..++||+|..+.. .++|.++++
T Consensus 87 ~~dG-~p~~HlH~sl~~~~G~v~gGHl~~g~V-~~t~Ei~i~~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 87 SMNE-QVYLHLHITVGRSDYSALAGHLLSAIQ-NGAGEFVVEDYSE-RISRTYNPD 139 (149)
T ss_dssp EETT-EEEEEEEEEEECTTSBEEEEEEEEEEE-EEEEEEEEEECCS-CCEEEEETT
T ss_pred ccCC-CceEEEEEEEECCCCCEEeEEeCCCEE-EEEEEEEEEEcCC-eeEEeeCCc
Confidence 9755 468999999999999999999998844 5689999999988 899988764
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.94 E-value=1e-26 Score=197.66 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=111.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221 89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL 168 (305)
Q Consensus 89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis 168 (305)
+.+++||++|+||+++|.+||+++++..++++++|++++++|++++...+ .|...+++ ++||+||+|||+
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~---------~y~~~~~~-~~Ei~sl~Gtis 82 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRK---------QFDPKTYR-NVEMANMTGSIA 82 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTT---------EEEEEEEE-EEEEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcC---------ccccEEec-CcEEEEEEEEEE
Confidence 67999999999999999999999999888899999999999999987654 58888898 899999999999
Q ss_pred CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221 169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL 224 (305)
Q Consensus 169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~ 224 (305)
+.++ .++.|||++++|.+|+|+||||..+.|...++||++..+. ..++|.++++
T Consensus 83 ~~dG-~p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~ 136 (147)
T 3hwu_A 83 WKEG-KPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE 136 (147)
T ss_dssp EETT-EEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred cCCC-CceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence 8664 5689999999999999999999988776569999999875 5999988664
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.51 E-value=4.2e-05 Score=48.17 Aligned_cols=17 Identities=59% Similarity=1.052 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 042221 59 AGRRPRGRPAGSRNKPK 75 (305)
Q Consensus 59 ~~kr~RGRP~GSknKpk 75 (305)
..|||||||.|||||.-
T Consensus 3 tpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp SCCCCSSCCTTCCCCSC
T ss_pred CCcCCCCCcCcccccCc
Confidence 46999999999999953
No 8
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=52.33 E-value=45 Score=30.23 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=60.6
Q ss_pred CChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCccee----EeeeeeEEEEEeeecc----CC
Q 042221 98 GADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVN----ITLHGRFEILSLTGTS----LP 169 (305)
Q Consensus 98 GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~----~tleGrFEILSLsGti----sp 169 (305)
-+++.+.|.+.. ...-.|-+-.-|..++|+.|--...++ -|.. +.-.-.|++--.+||+ +|
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~---------Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP 164 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQP---------PYTRLIDSARRQPEEKRQDIRGAIVGFFTP 164 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCS---------SCCCTHHHHTTCCEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCC---------CCCCHHHHhcCCceEEEeccEEEEEEEecc
Confidence 344444444443 345678889999999999998753322 1111 1122334444545554 55
Q ss_pred CCC-CCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221 170 PPA-PPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL 224 (305)
Q Consensus 170 ~~~-~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~ 224 (305)
.-- .-...++|+-+.+.|- .+||||....+...+ |-+..+.+.. -+||.++
T Consensus 165 ~~~~Gi~v~G~HlHFisdDr-~~GGHVldf~~~~~~--~~~~~~~~~~-l~lP~~~ 216 (237)
T 1xv2_A 165 ELFHGVGSAGFHIHFADDER-AYGGHVLDFEVDDVV--VEIQNFETFQ-QHFPVNN 216 (237)
T ss_dssp GGGBTTBCSEEEEEEEETTS-SCEEEEEEEEEEEEE--EEEEECSEEE-EECCTTC
T ss_pred hhhcccCCceeEEEEEcCCC-CCCcceEEEEecceE--EEEeecccEE-EECCCCC
Confidence 421 1123455666665444 489999987775544 4444444322 2567633
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=37.02 E-value=27 Score=29.81 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=38.1
Q ss_pred eEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEE-------eeeccCCCCCCCCCCeEEEEEeC
Q 042221 115 GVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILS-------LTGTSLPPPAPPGAGGLTIYLAG 185 (305)
Q Consensus 115 aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILS-------LsGtisp~~~~~~~~HLHISLAg 185 (305)
..=|||.=|+..|++++. + .++ +++..|.|||.| +..|+.+.--.....=||+-+.+
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~--~~a-----------iIt~~GtY~~~SD~~Y~E~IeKni~lp~l~g~~N~l~fE~~~ 100 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G--TDA-----------IITGYGTYRQISAAAYKESIEKNIHLPMLDNKDNILEFEMGA 100 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T--SCC-----------EEEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEECS
T ss_pred cEEEEcCCCcEEEEEEec-C--CCc-----------EEEEeEEEEecCCcceeeeecccccCcccCCCccEEEEEEcc
Confidence 567899999999999993 3 233 999999999997 55665543111112345555554
No 10
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=27.46 E-value=42 Score=27.84 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=24.7
Q ss_pred eCCCChHHHHHHHHHHhcCceEEEEEE
Q 042221 95 ISSGADIVDSVSTYARRRGRGVCILSG 121 (305)
Q Consensus 95 L~~GeDIvesI~~fArr~~~aicVLSa 121 (305)
+.+|++|.+.|.+..++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999888999999985
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=21.01 E-value=53 Score=26.72 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.9
Q ss_pred eCCCChHHHHHHHHHHhcCceEEEEEE
Q 042221 95 ISSGADIVDSVSTYARRRGRGVCILSG 121 (305)
Q Consensus 95 L~~GeDIvesI~~fArr~~~aicVLSa 121 (305)
+.+|+++.+.|.+-.++-.+.++|||-
T Consensus 44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~ 70 (149)
T 1fyx_A 44 FIHGKWIIDNIIDSIEKSHKTVFVLSE 70 (149)
T ss_dssp CCSSSCHHHHHHHHHHHEEEEEEEECH
T ss_pred CCCchhHHHHHHHHHHHcCEEEEEeCc
Confidence 789999999999999988999999985
Done!