BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042223
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/396 (44%), Positives = 241/396 (60%), Gaps = 40/396 (10%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
++GATLG++YY I E+++NL FP G CPTV LAAD+++DAHL
Sbjct: 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHL 182
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
++ +G++LDRKSMGEDLFW+IR WK++LV VPS T+F+V +NM+
Sbjct: 183 VNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL 242
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRAN---------STMVAAFSSLFLGGIDRLLPLMQ 175
K+ N+WQ IA K + L + I N +T+ FSS+F GG+D L+ LM
Sbjct: 243 VKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302
Query: 176 ESFPELGLKKEDCTEMNWIESA--------HSLAGFQKEEPLHLLLDRNSSNSKGAFE-- 225
+SFPELG+KK DC E +WI++ + A F+KE +LLDR S+ K AF
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKE----ILLDR-SAGKKTAFSIK 357
Query: 226 --------------GIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKIL 271
I + EE+ + L PYGG M EISES IPFP+RAG +Y++
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417
Query: 272 YVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSG-TNNQGYTSYKKDS 330
Y +W + ++++INW+R +Y + TPYVS+NPR AYLNYRDLD G TN+ +Y +
Sbjct: 418 YTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477
Query: 331 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPL 366
IWG+KYF NF+RLV VKT VDP+NFFRNEQSIPPL
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 287 bits (734), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 210/374 (56%), Gaps = 18/374 (4%)
Query: 7 SGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHLI 66
SGA LG LYY IA+ S LGFPAGVC T+ AAD+V+DA ++
Sbjct: 127 SGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVV 186
Query: 67 DAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMKQNATK 126
DA+GRLLDRK+MGED FW+IR W+V+L+ VP VT+F V + +K+ A
Sbjct: 187 DAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAID 246
Query: 127 IVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKE 186
+V +WQ +A L + L I ++ + A F +L+LG L+ LM FPELG+
Sbjct: 247 LVTKWQTVAPALPDDLMIRIMAMGQG----AMFEALYLGTCKDLVLLMTARFPELGMNAT 302
Query: 187 DCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIY--DMFAEEEGQSAFIALI 244
C EM WIES + K LL ++ + G ++ Y + + + + F L+
Sbjct: 303 HCKEMTWIESVPYIPMGPKGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLV 362
Query: 245 ----------PYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYG 294
PYGG + + ES PFP R+G ++ I YVV W +GA+ W R +Y
Sbjct: 363 KPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWTRDIYD 422
Query: 295 YMTPYVSKNPREAYLNYRDLDSGTNN--QGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVD 352
+MTPYVSKNPR+AY+NYRDLD G N ++Y +WG+KYFK NF+RL K +D
Sbjct: 423 FMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKID 482
Query: 353 PHNFFRNEQSIPPL 366
P ++FRNEQSIPPL
Sbjct: 483 PEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 207/377 (54%), Gaps = 22/377 (5%)
Query: 7 SGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHLI 66
SGA LG+LYY I + S L FPAGVCPT+ +AA++V+D L+
Sbjct: 125 SGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLV 184
Query: 67 DAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMKQNATK 126
DA G+L D+KSMG+D FW++R W+V+L+ VP TVT+F + + + + A
Sbjct: 185 DANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVD 244
Query: 127 IVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKE 186
I+N+WQ +A +L L I ++ +T F +++LG L PLM FPELG+
Sbjct: 245 IINKWQVVAPQLPADLMIRIIAQGPKAT----FEAMYLGTCKTLTPLMSSKFPELGMNPS 300
Query: 187 DCTEMNWIESAHSLAGFQKEEPLHLLLDRNSS---------------NSKGAFEGIYDMF 231
C EM+WI+S + ++ LL+R +S K +E I + +
Sbjct: 301 HCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTW 360
Query: 232 AEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRK 291
+ G I PYG ++ ES PFP+R G ++ I YV W GA+ ++W +
Sbjct: 361 LVKPGAGIMI-FDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKD 419
Query: 292 LYGYMTPYVSKNPREAYLNYRDLDSGTNN--QGYTSYKKDSIWGKKYFKNNFDRLVHVKT 349
+Y YM PYVSKNPR+AY NYRD+D G N ++Y +WG+KYFK NF+RL K
Sbjct: 420 IYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKG 479
Query: 350 TVDPHNFFRNEQSIPPL 366
VDP ++FRNEQSIPPL
Sbjct: 480 KVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 218/385 (56%), Gaps = 25/385 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG CPTV LAAD+VVDA L
Sbjct: 140 ESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 199
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 200 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 259
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 260 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 318
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 319 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 378
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 379 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 436
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 437 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 496
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLSS 368
L+ KT +DP+N F + QSIPP+++
Sbjct: 497 LIRAKTLIDPNNVFNHPQSIPPMAN 521
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 218/385 (56%), Gaps = 25/385 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG CPTV LAAD+VVDA L
Sbjct: 121 ESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAIL 180
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 181 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 240
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 241 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 299
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 300 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 359
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 360 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 417
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 418 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 477
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLSS 368
L+ KT +DP+N F + QSIPP+++
Sbjct: 478 LIRAKTLIDPNNVFNHPQSIPPMAN 502
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 218/385 (56%), Gaps = 25/385 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG CPTV LAAD+VVDA L
Sbjct: 121 ESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 180
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 181 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 240
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 241 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 299
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 300 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 359
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 360 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 417
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 418 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 477
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLSS 368
L+ KT +DP+N F + QSIPP+++
Sbjct: 478 LIRAKTLIDPNNVFNHPQSIPPMAN 502
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 217/384 (56%), Gaps = 25/384 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG CPTV LAAD+VVDA L
Sbjct: 115 ESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 174
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 175 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 234
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 235 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 293
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 294 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 353
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 354 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 411
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 412 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 471
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLS 367
L+ KT +DP+N F + QSIPP++
Sbjct: 472 LIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 217/384 (56%), Gaps = 25/384 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG CPTV LAAD+VVDA L
Sbjct: 118 ESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 177
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 178 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 237
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 238 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 296
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 297 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 356
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 357 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 414
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 415 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 474
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLS 367
L+ KT +DP+N F + QSIPP++
Sbjct: 475 LIRAKTLIDPNNVFNHPQSIPPMA 498
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 217/385 (56%), Gaps = 25/385 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG PTV LAAD+VVDA L
Sbjct: 115 ESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 174
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 175 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 234
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 235 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 293
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 294 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 353
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 354 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 411
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 412 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 471
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLSS 368
L+ KT +DP+N F + QSIPP+++
Sbjct: 472 LIRAKTLIDPNNVFNHPQSIPPMAN 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 216/384 (56%), Gaps = 25/384 (6%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+SG+TLG+LYY I E S LGF AG PTV LAAD+VVDA L
Sbjct: 115 ESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 174
Query: 66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
IDA G +LDR++MGED+FW+IR WK++L+ VP VT+F V +N+ A
Sbjct: 175 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 234
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLL-PLMQESFPELGL 183
T ++++WQ++A +L E F VL A+ V F G+ + FPELGL
Sbjct: 235 TSLLHKWQFVAEELEED-FTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 293
Query: 184 KKEDCTEMNWIESAHSLAGFQKEEPLH---LLLDRNSSNSK----------GAFEGIYDM 230
+ED EM+W ES LAG + L+ L D + +K AF G+ +
Sbjct: 294 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 353
Query: 231 FAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQR--YINW 288
++E + FIAL +GG+M++IS PFP+R+G + Y+VAW + ++ +++W
Sbjct: 354 LSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDW 411
Query: 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSI-----WGKKYFKNNFDR 343
+ K+Y +M P+VSKNPR Y+N+ DLD G + G + ++I WG+ YF +N++R
Sbjct: 412 LEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYER 471
Query: 344 LVHVKTTVDPHNFFRNEQSIPPLS 367
L+ KT +DP+N F + QSIPP++
Sbjct: 472 LIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 224 FEGIYDMFAEEEG-QSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGAS 282
+ +Y+ +G + LI YGGK+N + + P R I K+ Y+ W G
Sbjct: 380 IQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNE 438
Query: 283 QRYINWIRKLYGYM------TPYVSKNPREAYLNYRD---LDSGTNNQGYTSYKKDSIWG 333
+++ W+RKLY + P + AY+NY D D G N G W
Sbjct: 439 AKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLNTSGVP-------WH 491
Query: 334 KKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPP 365
Y+K N RL VK DP N F + SI P
Sbjct: 492 DLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 238 SAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYM- 296
+ +ALI YGGK+N + R +I KI+YV W + ++ WIR+LY +
Sbjct: 399 AGVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPVHVRWIRELYRDVY 457
Query: 297 -----TPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTV 351
P AY+NY D+D + W + Y+K+ + RL VK
Sbjct: 458 ADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVP----WSELYYKDAYPRLQAVKARW 513
Query: 352 DPHNFFRNEQSIPPLSSRVP 371
DP N FR+ LS RVP
Sbjct: 514 DPRNVFRHA-----LSVRVP 528
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 230 MFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWI 289
+ A+ GQ++++ YGG++N S+ P R ++ K + AW + + ++ W+
Sbjct: 365 LHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDAELDELHLGWL 423
Query: 290 RKLY------GYMTPYVSKNPREAYLNYRD---LDSGTNNQGYTSYKKDSIWGKKYFKNN 340
R LY P Y+NY D LD N G W Y+K+N
Sbjct: 424 RGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSG-------EPWHHLYYKDN 476
Query: 341 FDRLVHVKTTVDPHNFFRNEQSI 363
+ RL K DP N F + SI
Sbjct: 477 YARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 241 IALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYM---- 296
++L YGGK+N + E+ R +I K+ W + + WIR++Y +
Sbjct: 394 VSLYSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDANLAWIREIYREIFATT 452
Query: 297 --TPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPH 354
P ++NY D+D + W Y+K N+ RL VK DP
Sbjct: 453 GGVPVPDDRTEGTFINYPDVDLVDERWNTSGVP----WYTLYYKGNYPRLQKVKARWDPR 508
Query: 355 NFFRNEQSIPP 365
+ FR+ S+ P
Sbjct: 509 DVFRHALSVRP 519
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHV--VDA 63
+ GATLG+ Y R + PAGVCP V + ADH+ V+
Sbjct: 124 EPGATLGETY-RALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEV 182
Query: 64 HLIDAEGR 71
++DA GR
Sbjct: 183 VVVDASGR 190
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 128/344 (37%), Gaps = 67/344 (19%)
Query: 55 LAADHVVDAHLIDAEGRLL----DRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPST 110
LA+D+++ A L+ A G ++ D + +LFW++R +V+L +P
Sbjct: 153 LASDNILGATLVTATGDVIYCSDDERP---ELFWAVRGAGPNFGVVTEV-EVQLYELPRK 208
Query: 111 -----VTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLG 165
+T + + T +++ +A+ ++ +F+ V RA S V LG
Sbjct: 209 MLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLG 265
Query: 166 GID-------RLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSS 218
G+D RL L + + ++ D + + ++ G ++ +L +DR +
Sbjct: 266 GLDIAERDIARLRGLGRTVSDSIAVRSYD-----EVVALNAEVGSFEDGMSNLWIDREIA 320
Query: 219 NSKGAFE----GIYDMFAEEEGQSAFIAL----IPYGGKMNEISESEIPFPYRAGNIYKI 270
F G D F E + L +P+G P R + +
Sbjct: 321 MPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRT--------PARHRDAMGV 372
Query: 271 LYVVAW-GEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKD 329
L + W G S++Y R+L + L +G G+ +
Sbjct: 373 LALAEWSGAAPGSEKYPELARELDAAL-----------------LRAGVTTSGFGLLNNN 415
Query: 330 S-----IWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSS 368
S + + Y + RL VK DP N FR+ +I P S
Sbjct: 416 SEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPEGS 459
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 82/390 (21%), Positives = 145/390 (37%), Gaps = 53/390 (13%)
Query: 6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
+ GA LG L + ++ G CP V LA D VV +
Sbjct: 107 EPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTV 165
Query: 66 IDAEGRLLDRKSM-GEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMKQNA 124
+ A+GR+++ + DLFW I+ WK+ P +T F V N K N
Sbjct: 166 VLADGRIVEASATENADLFWGIKGAGSNFGIVAV-WKLATFPAPKVLTRFGVTLNWK-NK 223
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSS-------LFLGGIDRLLPLMQES 177
T + + + + + V R + + + + L+ G ++ Q
Sbjct: 224 TSALKGIEAVED------YARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPL 277
Query: 178 FPEL--GLKKEDCTEMNWIESAHSLAGFQK-----EEPLH------LLLDRNSSNSKGAF 224
L G T +NWIES S + F +P+ L L ++ F
Sbjct: 278 LDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNF 337
Query: 225 EGIY-DMFAEEEGQSAFIALIPYGGK---MNEISESEIPFPYRAGNIYKILYVVAWGEDG 280
Y D+ + + + F L +GGK + +++ +E +P+R K+ + +
Sbjct: 338 VDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRD----KLWLIQFYDRYD 393
Query: 281 ASQRY----INWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKY 336
+Q Y ++ +T + K+ Y+NY D ++ Y + K Y
Sbjct: 394 NNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRM---DRDYAT--------KVY 442
Query: 337 FKNNFDRLVHVKTTVDPHNFFRNEQSIPPL 366
+ N RL +K DP + F Q++ P+
Sbjct: 443 YGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 293 YGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVD 352
YGY ++N AY+ ++ + +GYT+ K G Y FDR + TTVD
Sbjct: 364 YGY-----AQNQMSAYVELQEREFAAEERGYTATKHQREVGAGY----FDR---IATTVD 411
Query: 353 PHN 355
P++
Sbjct: 412 PNS 414
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 293 YGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVD 352
YGY ++N AY+ ++ + +GYT+ K G Y FDR + TTVD
Sbjct: 364 YGY-----AQNQMSAYVELQEREFAAEERGYTATKHQREVGAGY----FDR---IATTVD 411
Query: 353 PHN 355
P++
Sbjct: 412 PNS 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,701,283
Number of Sequences: 62578
Number of extensions: 433579
Number of successful extensions: 828
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 19
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)