Query 042223
Match_columns 376
No_of_seqs 210 out of 1681
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 5E-27 1.1E-31 234.5 30.9 117 1-119 136-253 (525)
2 PLN02805 D-lactate dehydrogena 99.9 2.2E-25 4.8E-30 225.7 21.4 321 1-365 198-551 (555)
3 PRK11230 glycolate oxidase sub 99.9 2.2E-23 4.8E-28 209.9 21.1 118 1-119 120-242 (499)
4 TIGR01678 FAD_lactone_ox sugar 99.9 5.4E-22 1.2E-26 196.6 24.2 126 1-135 77-204 (438)
5 TIGR00387 glcD glycolate oxida 99.9 9.8E-23 2.1E-27 201.6 18.7 118 1-119 62-185 (413)
6 TIGR01679 bact_FAD_ox FAD-link 99.9 1.6E-21 3.4E-26 193.0 25.5 128 1-136 71-199 (419)
7 COG0277 GlcD FAD/FMN-containin 99.9 9.8E-22 2.1E-26 197.4 20.1 112 1-113 95-212 (459)
8 PRK11282 glcE glycolate oxidas 99.9 4.9E-21 1.1E-25 183.7 13.0 116 1-117 57-179 (352)
9 TIGR01676 GLDHase galactonolac 99.8 3E-20 6.6E-25 185.8 15.1 127 1-135 124-251 (541)
10 KOG1231 Proteins containing th 99.8 3.6E-20 7.9E-25 175.8 13.3 106 2-109 134-240 (505)
11 TIGR01677 pln_FAD_oxido plant- 99.8 3.2E-19 7E-24 180.6 13.7 107 1-110 99-214 (557)
12 PLN02465 L-galactono-1,4-lacto 99.7 1.5E-16 3.3E-21 160.5 14.8 127 1-135 159-286 (573)
13 PF08031 BBE: Berberine and be 99.7 4.1E-17 8.8E-22 110.3 3.1 47 307-364 1-47 (47)
14 KOG1262 FAD-binding protein DI 99.5 2.2E-13 4.7E-18 127.5 9.7 109 1-111 122-232 (543)
15 PRK13905 murB UDP-N-acetylenol 99.4 2.9E-13 6.2E-18 128.3 6.8 100 1-108 92-193 (298)
16 PF01565 FAD_binding_4: FAD bi 99.4 3.2E-13 6.9E-18 113.6 5.1 74 1-74 64-137 (139)
17 KOG1232 Proteins containing th 99.3 6.2E-11 1.3E-15 110.9 16.1 111 1-112 154-270 (511)
18 KOG4730 D-arabinono-1, 4-lacto 99.0 2.3E-09 5E-14 102.9 11.2 113 1-116 112-226 (518)
19 PRK11183 D-lactate dehydrogena 99.0 1.4E-09 3.1E-14 108.3 10.1 117 1-120 107-278 (564)
20 PRK14652 UDP-N-acetylenolpyruv 99.0 7.6E-10 1.7E-14 104.8 7.0 98 2-108 98-196 (302)
21 PRK13903 murB UDP-N-acetylenol 98.9 6E-09 1.3E-13 100.6 7.9 99 2-108 95-197 (363)
22 KOG1233 Alkyl-dihydroxyacetone 98.8 2.1E-08 4.5E-13 94.4 8.8 113 2-119 230-351 (613)
23 TIGR00179 murB UDP-N-acetyleno 98.6 5.3E-08 1.1E-12 91.6 6.3 97 2-106 75-174 (284)
24 PRK12436 UDP-N-acetylenolpyruv 98.6 7.8E-08 1.7E-12 91.3 7.5 96 2-107 98-197 (305)
25 PRK13906 murB UDP-N-acetylenol 98.6 7.1E-08 1.5E-12 91.6 6.5 98 2-107 98-197 (307)
26 PRK14649 UDP-N-acetylenolpyruv 98.3 1.1E-06 2.4E-11 83.1 6.7 97 2-107 85-192 (295)
27 PRK14653 UDP-N-acetylenolpyruv 97.5 0.00026 5.7E-09 66.9 6.6 96 2-108 94-194 (297)
28 PRK14650 UDP-N-acetylenolpyruv 96.7 0.0045 9.7E-08 58.6 7.0 98 2-108 95-195 (302)
29 PRK00046 murB UDP-N-acetylenol 96.6 0.0058 1.3E-07 58.7 6.9 96 2-107 85-188 (334)
30 COG0812 MurB UDP-N-acetylmuram 96.4 0.014 3.1E-07 54.5 8.2 96 2-107 84-183 (291)
31 PRK14651 UDP-N-acetylenolpyruv 95.8 0.029 6.3E-07 52.4 7.4 93 4-107 75-170 (273)
32 PF02913 FAD-oxidase_C: FAD li 95.8 0.0064 1.4E-07 55.3 3.0 80 266-361 167-247 (248)
33 PF09265 Cytokin-bind: Cytokin 95.7 0.018 3.9E-07 53.7 5.6 33 330-363 248-280 (281)
34 PRK14648 UDP-N-acetylenolpyruv 94.5 0.14 3E-06 49.5 7.7 99 2-108 96-237 (354)
35 PRK13904 murB UDP-N-acetylenol 93.9 0.19 4.2E-06 46.5 7.0 91 2-108 68-160 (257)
36 PLN00107 FAD-dependent oxidore 93.7 0.25 5.5E-06 45.3 7.3 22 339-360 176-197 (257)
37 PF04030 ALO: D-arabinono-1,4- 92.5 0.22 4.7E-06 46.2 5.2 28 331-360 227-254 (259)
38 TIGR01677 pln_FAD_oxido plant- 83.2 1.9 4.2E-05 44.5 5.3 27 332-360 477-503 (557)
39 PRK11282 glcE glycolate oxidas 66.3 4.1 8.9E-05 39.6 2.3 22 339-360 324-346 (352)
40 KOG4730 D-arabinono-1, 4-lacto 56.2 5.7 0.00012 39.4 1.3 20 339-358 485-504 (518)
41 TIGR01676 GLDHase galactonolac 40.8 16 0.00034 37.7 1.7 20 341-360 515-534 (541)
42 PLN02465 L-galactono-1,4-lacto 37.3 20 0.00043 37.3 1.8 27 331-360 538-564 (573)
43 PHA02087 hypothetical protein 36.6 50 0.0011 23.7 3.2 21 54-74 38-58 (83)
44 PF12108 SF3a60_bindingd: Spli 36.4 25 0.00054 20.7 1.4 13 338-350 10-22 (28)
45 PF03941 INCENP_ARK-bind: Inne 35.9 14 0.0003 25.7 0.3 34 330-369 19-52 (57)
46 PF03392 OS-D: Insect pheromon 29.8 33 0.00072 26.6 1.6 15 344-358 78-92 (95)
47 PF14658 EF-hand_9: EF-hand do 26.6 45 0.00097 24.0 1.6 15 342-356 35-49 (66)
48 PF04753 Corona_NS2: Coronavir 24.0 48 0.001 25.5 1.4 12 91-102 67-78 (109)
49 KOG1233 Alkyl-dihydroxyacetone 22.6 42 0.00092 32.8 1.1 21 340-360 590-610 (613)
50 PF12439 GDE_N: Glycogen debra 21.2 93 0.002 28.1 3.0 65 35-108 7-85 (223)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=99.96 E-value=5e-27 Score=234.53 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=102.3
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMG 79 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~ 79 (376)
++|+|++|++|.||++++.++|+- ....+.+..+++||.+.++|+|-.+.+||..+|||+++||||+||++++ ++++|
T Consensus 136 ~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n 214 (525)
T PLN02441 136 PYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQN 214 (525)
T ss_pred CEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCC
Confidence 478999999999999999998742 2234667788999999999999999999999999999999999999998 88899
Q ss_pred cchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEec
Q 042223 80 EDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRN 119 (376)
Q Consensus 80 ~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~ 119 (376)
+|||||+||| +|+|||||++++|++|+|+.+..+.+.+.
T Consensus 215 ~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~ 253 (525)
T PLN02441 215 SDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYS 253 (525)
T ss_pred hhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence 9999999998 68999999999999999986544444443
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.94 E-value=2.2e-25 Score=225.73 Aligned_cols=321 Identities=12% Similarity=0.113 Sum_probs=184.9
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe--cC--
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD--RK-- 76 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~--~~-- 76 (376)
++|+||||+++.+|+++|.++|+ .++...++.++|||++.++++|..+.+||..+|+|+++||||+||++++ +.
T Consensus 198 ~~vtVeaGv~~~~L~~~L~~~Gl--~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~ 275 (555)
T PLN02805 198 MDVVVEPGIGWLELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRAR 275 (555)
T ss_pred CEEEEeCCcCHHHHHHHHHHcCC--EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccc
Confidence 47999999999999999999984 4666666778999999999999999999999999999999999999995 22
Q ss_pred --CCCcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEeccchhHHHHHHHHHHHHhh-cCCCceEEEEEec---
Q 042223 77 --SMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANK-LHEGLFIDVVLIR--- 150 (376)
Q Consensus 77 --~~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 150 (376)
..++||||+++|+ +|+|||||++++|++|.|+......+.|+..+++.+++ ..+... ..+ ..+.+ +..
T Consensus 276 k~~~g~dL~~l~~Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av---~~i~~~g~~p-sa~El-mD~~~~ 349 (555)
T PLN02805 276 KSAAGYDLTRLVIGS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVA---IATMLSGIQV-SRVEL-LDEVQI 349 (555)
T ss_pred cCCCCccHHHHhccC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHH---HHHHhCCCCc-EEEEE-ECHHHH
Confidence 1357999999999 78999999999999999986555555554222233333 332211 110 01111 110
Q ss_pred -------CCC-eeEEEEEEEEeCCccCchhh---hhccCcccCCCcccceecchHHHHHhhcC-------CCCCCccccc
Q 042223 151 -------ANS-TMVAAFSSLFLGGIDRLLPL---MQESFPELGLKKEDCTEMNWIESAHSLAG-------FQKEEPLHLL 212 (376)
Q Consensus 151 -------~~~-~~~~~~~~~~~g~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~ 212 (376)
... .....+...+.|+.++..+. +...+...+... .....+..+....|.. .....+....
T Consensus 350 ~~~~~~~~~~~p~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~-~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~ 428 (555)
T PLN02805 350 RAINMANGKNLPEAPTLMFEFIGTEAYAREQTLIVQKIASKHNGSD-FVFAEEPEAKKELWKIRKEALWACFAMEPKYEA 428 (555)
T ss_pred HHHHHhcCCCCCcceEEEEEEecCcHHHHHHHHHHHHHHHhCCCce-EEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCce
Confidence 000 00123344566765432211 111111112110 0000111111111110 0000000000
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccC--CceEEEEEecCCCCCCCCCCCCCCcccCCceEEEEEEEEeCCC--CchhHHHHH
Q 042223 213 LDRNSSNSKGAFEGIYDMFAEEEG--QSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGED--GASQRYINW 288 (376)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~ta~~~R~~~~~~~~~~~~w~~~--~~~~~~~~~ 288 (376)
+.-....|.+.+.++++.+.+.-. ...... |.|-.+..+|+.+. .+.. +..++..+.
T Consensus 429 ~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~-----------------~gHaGdGnlH~~i~--~~~~~~~~~~~~~~~ 489 (555)
T PLN02805 429 MITDVCVPLSHLAELISRSKKELDASPLVCTV-----------------IAHAGDGNFHTIIL--FDPSQEDQRREAERL 489 (555)
T ss_pred eEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEE-----------------EEEcCCCcEEEEec--cCCCCHHHHHHHHHH
Confidence 000111255556666555443110 001111 23332234555443 2221 122334455
Q ss_pred HHHHHhccccCCCCCCCceeccCCCCCCCCCCCCCCcccccchhhhhhhh-hcHHHHHHhHhccCCCCCCCCCCCCCC
Q 042223 289 IRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFK-NNFDRLVHVKTTVDPHNFFRNEQSIPP 365 (376)
Q Consensus 289 ~~~~~~~l~~~~~~~~~g~Y~N~~d~~~~~~~~~~~~~~~~~~~~~~y~g-~n~~rL~~iK~kyDP~nvF~~~~~I~p 365 (376)
.+++++.+..+ +|+-..|++... ....|-..+|| +.++-+++||+.+||+|+++..+-++|
T Consensus 490 ~~~i~~~~~~~-----gGsiSgEHGiG~-----------~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 490 NHFMVHTALSM-----EGTCTGEHGVGT-----------GKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHHHHHHHHc-----CCeEeEECCCCh-----------hHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 55555555555 577777887652 23467778887 479999999999999999999988764
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.91 E-value=2.2e-23 Score=209.86 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=100.8
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cC---
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RK--- 76 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~--- 76 (376)
++|+||||+++.||+++|.++|+.+.+..++...++|||++..++.|..+.+||...|+|+++|||++||++++ +.
T Consensus 120 ~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~ 199 (499)
T PRK11230 120 RRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDAL 199 (499)
T ss_pred CEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccC
Confidence 47999999999999999999986544444555567899999999999999999999999999999999999997 32
Q ss_pred -CCCcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEec
Q 042223 77 -SMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRN 119 (376)
Q Consensus 77 -~~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~ 119 (376)
..++||+|+++|+ +|+|||||++|+|++|.|+....+.+.++
T Consensus 200 ~~~g~dl~~l~~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~ 242 (499)
T PRK11230 200 DSPGFDLLALFTGS-EGMLGVVTEVTVKLLPKPPVARVLLASFD 242 (499)
T ss_pred CCCccchHhhhccC-CCccEEEEEEEEEEEcCCcceEEEEEECC
Confidence 2468999999999 78999999999999999986554444443
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.90 E-value=5.4e-22 Score=196.62 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=107.0
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceecc-CCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFP-AGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSM 78 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~-~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~ 78 (376)
++|+||||+++.+|.++|.++|+. ++ .|.++.++|||++.+|+||. +.+||..+|+|++++||++||++++ ++++
T Consensus 77 ~~vtV~aG~~l~~L~~~L~~~Gl~--l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~ 153 (438)
T TIGR01678 77 KQITVEAGIRLYQLHEQLDEHGYS--MSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEER 153 (438)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCE--ecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCC
Confidence 379999999999999999999854 44 68899999999999999996 7899999999999999999999998 7788
Q ss_pred CcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEeccchhHHHHHHHHHHHH
Q 042223 79 GEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIA 135 (376)
Q Consensus 79 ~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (376)
|+|||||++|+ .|+|||||++|+|++|....... ... ....+++..|++..
T Consensus 154 ~~dlf~a~~~~-~G~lGIIt~vtl~l~p~~~l~~~--~~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 154 NADVFQAARVS-LGCLGIIVTVTIQVVPQFHLQET--SFV---STLKELLDNWDSHW 204 (438)
T ss_pred ChhHHHHHhcC-CCceEeeEEEEEEEEeccceEEE--Eec---CCHHHHHHHHHHHh
Confidence 99999999998 68999999999999998764322 111 13467777776654
No 5
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.90 E-value=9.8e-23 Score=201.63 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=99.4
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cC---
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RK--- 76 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~--- 76 (376)
++|+||||+++.+|+++|.++|+.+.+..++....++||++.+++.|..+.+||...|+|++++||++||++++ ..
T Consensus 62 ~~v~veaGv~~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~ 141 (413)
T TIGR00387 62 LTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTA 141 (413)
T ss_pred CEEEEcCCccHHHHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCccc
Confidence 47999999999999999999986443334555567799999999999999999999999999999999999996 32
Q ss_pred --CCCcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEec
Q 042223 77 --SMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRN 119 (376)
Q Consensus 77 --~~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~ 119 (376)
...+||+|.+.|+ .|+|||||+++||++|.|+......+.+.
T Consensus 142 ~~~~g~dl~~l~~Gs-~GtlGiit~~~lkl~p~p~~~~~~~~~f~ 185 (413)
T TIGR00387 142 KDVAGYDLTGLFVGS-EGTLGIVTEATLKLLPKPENIVVALAFFD 185 (413)
T ss_pred CCCCCCChhhhcccC-CccceEEEEEEEEeecCCCccEEEEEECC
Confidence 2356999999999 78999999999999999986544444444
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.90 E-value=1.6e-21 Score=192.96 Aligned_cols=128 Identities=19% Similarity=0.272 Sum_probs=104.1
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMG 79 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~ 79 (376)
++|+||||+++.||.++|.++|+.+.+ .|.+..++|||.+.+|+||. +..||..+|+|++++||++||++++ ++.+|
T Consensus 71 ~~v~v~aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~ 148 (419)
T TIGR01679 71 GLATVEAGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDD 148 (419)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCC
Confidence 479999999999999999999864332 35666788999999999996 5689999999999999999999998 77889
Q ss_pred cchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEeccchhHHHHHHHHHHHHh
Q 042223 80 EDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIAN 136 (376)
Q Consensus 80 ~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (376)
+|||||+||| +|+|||||++|+|++|..+.... .... ...+++..+.++..
T Consensus 149 ~dLf~a~~g~-~G~lGVIt~vtl~~~p~~~~~~~-~~~~----~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 149 QDMYLAARVS-LGALGVISQVTLQTVALFRLRRR-DWRR----PLAQTLERLDEFVD 199 (419)
T ss_pred HHHHHHHHhC-CCceEEEEEEEEEeecceEeEEE-EEec----CHHHHHHHHHHHHh
Confidence 9999999999 68999999999999998764322 1111 23455556666543
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.88 E-value=9.8e-22 Score=197.41 Aligned_cols=112 Identities=22% Similarity=0.359 Sum_probs=96.2
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cC---
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RK--- 76 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~--- 76 (376)
++|+|+||+++.+|.++|.++|+.+.+..++..+++|||++.++++|..+.+||...|+|++++||++||++++ ..
T Consensus 95 ~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~ 174 (459)
T COG0277 95 GTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLR 174 (459)
T ss_pred CEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCccc
Confidence 47999999999999999999986554444444489999999999999999999999999999999999999996 22
Q ss_pred --CCCcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEE
Q 042223 77 --SMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTL 113 (376)
Q Consensus 77 --~~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~ 113 (376)
....||+++..|+ .|+|||||++++|++|.|+....
T Consensus 175 k~~~g~dl~~l~iGs-~GtlGiit~~tl~l~p~~~~~~~ 212 (459)
T COG0277 175 KDNAGYDLTALFVGS-EGTLGIITEATLKLLPLPETKAT 212 (459)
T ss_pred CCCCCCCHHHhcccC-CccceEEEEEEEEeccCCchheE
Confidence 2235898888887 88999999999999998875433
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.85 E-value=4.9e-21 Score=183.75 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=98.6
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccC-CCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCC-
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPA-GVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKS- 77 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~-g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~- 77 (376)
++|+|++|+++.||.++|.++|..+.+.. ..++..+|||++.+|++|+.+.+||..+|+|++++||++||++++ +..
T Consensus 57 ~~vtV~AG~~l~el~~~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v 136 (352)
T PRK11282 57 LVITARAGTPLAELEAALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQV 136 (352)
T ss_pred CEEEECCCCCHHHHHHHHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcc
Confidence 47999999999999999999986554433 345568899999999999999999999999999999999999997 321
Q ss_pred ----CCcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEE
Q 042223 78 ----MGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVI 117 (376)
Q Consensus 78 ----~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~ 117 (376)
.++||||+++|+ .|+|||||+++||++|.|+....+.+.
T Consensus 137 ~kn~~G~DL~~l~~Gs-~GtLGVitevtlkl~P~p~~~~t~~~~ 179 (352)
T PRK11282 137 MKNVAGYDVSRLMAGS-LGTLGVLLEVSLKVLPRPRAELTLRLE 179 (352)
T ss_pred cCCCCCchHHHHHhhC-CchhhhheEEEEEEEecCceEEEEEEe
Confidence 356999999999 789999999999999999854433333
No 9
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.84 E-value=3e-20 Score=185.78 Aligned_cols=127 Identities=23% Similarity=0.240 Sum_probs=106.6
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMG 79 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~ 79 (376)
++|+||||+++.||.++|.++|+.+ ...|.++.++|||++.+|+||. +.+||..+|+|++++||||||++++ ++++|
T Consensus 124 ~tVtV~AG~~l~~L~~~L~~~Glal-~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s~~~~ 201 (541)
T TIGR01676 124 KRVRVQAGIRVQQLVDAIKEYGITL-QNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEISKDKD 201 (541)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEe-ccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEECCCCC
Confidence 4899999999999999999998543 2358899999999999999997 5579999999999999999999998 77889
Q ss_pred cchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEeccchhHHHHHHHHHHHH
Q 042223 80 EDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIA 135 (376)
Q Consensus 80 ~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (376)
+|||||+||| .|+|||||++|+|++|.+... ...... ...+++..+.++.
T Consensus 202 pdLF~Aargs-lG~LGVItevTLr~~Pa~~l~-~~~~~~----~~~e~l~~~~~~~ 251 (541)
T TIGR01676 202 PELFFLARCG-LGGLGVVAEVTLQCVERQELV-EHTFIS----NMKDIKKNHKKFL 251 (541)
T ss_pred HHHHHHHhcC-CCceEeEEEEEEEEEecccee-EEEEec----CHHHHHHHHHHHH
Confidence 9999999999 689999999999999998743 222222 2456666676654
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.83 E-value=3.6e-20 Score=175.77 Aligned_cols=106 Identities=21% Similarity=0.337 Sum_probs=94.2
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCCCc
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMGE 80 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~~ 80 (376)
.|.|.||..|-||.+++.++|+.-....--.+ ..|||.+..+|+|-..-+||-..+||++++|||++|++++ ++..|+
T Consensus 134 yvdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~ 212 (505)
T KOG1231|consen 134 YVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANS 212 (505)
T ss_pred eEEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCc
Confidence 57899999999999999999852122222223 7899999999999999999999999999999999999998 778999
Q ss_pred chhhhhhcCCCCCeeEEEEEEEEEeecCc
Q 042223 81 DLFWSIRGGGGASFGVVVAWKVRLVTVPS 109 (376)
Q Consensus 81 dLfwalrG~Gg~~fGvVt~~~~~~~p~~~ 109 (376)
+||.++.|| .|+|||||++++|++|+|+
T Consensus 213 ~lf~~vlGg-lGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 213 NLFFLVLGG-LGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeeecc-CcceeeEEEEEEEeccCCc
Confidence 999999999 8999999999999999994
No 11
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.80 E-value=3.2e-19 Score=180.61 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=94.7
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceecc-CCCCCcccccccccCCCCCccc-cccccccccEeEEEEEcCCC------cE
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFP-AGVCPTVGVGGHFSGGGYGFMM-GKFGLAADHVVDAHLIDAEG------RL 72 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~-~g~~~~vgvgG~~lggG~g~~s-~~~G~~~D~v~~~~vV~a~G------~~ 72 (376)
++|+||||+++.+|+++|.++|+ +++ .+.+..++|||.+.+|+||... ++||+.+|+|++++|||+|| ++
T Consensus 99 ~tVtV~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v 176 (557)
T TIGR01677 99 MTVTVESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKV 176 (557)
T ss_pred CEEEECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceE
Confidence 48999999999999999999985 344 3456778999999999999754 68999999999999999999 78
Q ss_pred Ee-cCCCCcchhhhhhcCCCCCeeEEEEEEEEEeecCce
Q 042223 73 LD-RKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPST 110 (376)
Q Consensus 73 ~~-~~~~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~ 110 (376)
++ ++.+|+|||||+||| +|+|||||++|+|++|.+..
T Consensus 177 ~~~s~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 177 RILSEGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFKR 214 (557)
T ss_pred EEeCCCCCHHHHHhhccC-CCccEeeeEEEEEEEccccc
Confidence 87 778899999999999 68999999999999998763
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.70 E-value=1.5e-16 Score=160.52 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=103.0
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMG 79 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~ 79 (376)
++|+||||+++.+|.++|.++|+.+. ..|.+...+|||.+..|+||.. ..+|..+|+|++++||+++|++++ +..+|
T Consensus 159 ~~VtV~AG~~l~~L~~~L~~~GLal~-n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~ 236 (573)
T PLN02465 159 KRVTVQAGARVQQVVEALRPHGLTLQ-NYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDD 236 (573)
T ss_pred CEEEEccCCCHHHHHHHHHHcCCEec-cCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCC
Confidence 47999999999999999999985432 2466777889999999999974 468999999999999999999998 77788
Q ss_pred cchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEeccchhHHHHHHHHHHHH
Q 042223 80 EDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIA 135 (376)
Q Consensus 80 ~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (376)
+|||||.|++ .|+|||||++|||++|..+... -....+ ..++++.+.++.
T Consensus 237 pdLF~aar~g-lG~lGVIteVTLql~P~~~L~~-~~~~~~----~~~~~~~~~~~~ 286 (573)
T PLN02465 237 PELFRLARCG-LGGLGVVAEVTLQCVPAHRLVE-HTFVSN----RKEIKKNHKKWL 286 (573)
T ss_pred HHHHhHhhcc-CCCCcEEEEEEEEEEecCceEE-EEEEec----HHHHHHHHHHHH
Confidence 9999999998 6889999999999999987432 122222 345555666654
No 13
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.66 E-value=4.1e-17 Score=110.25 Aligned_cols=47 Identities=47% Similarity=0.818 Sum_probs=34.1
Q ss_pred eeccCCCCCCCCCCCCCCcccccchhhhhhhhhcHHHHHHhHhccCCCCCCCCCCCCC
Q 042223 307 AYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIP 364 (376)
Q Consensus 307 ~Y~N~~d~~~~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~iK~kyDP~nvF~~~~~I~ 364 (376)
+|+||+|.+++ ..+|.+.|||+||+||++||++|||+|||+++|+|+
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999997732 137999999999999999999999999999999996
No 14
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=127.52 Aligned_cols=109 Identities=23% Similarity=0.303 Sum_probs=99.8
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe--cCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD--RKSM 78 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~--~~~~ 78 (376)
+||+|+|+++++++-++|-+.|+.+++ .....+.++||++-|-|+--.|.+|||-.|-+.+.|||+|||++++ ..++
T Consensus 122 mtvrvEP~Vtmgqis~~lip~g~tLaV-~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne 200 (543)
T KOG1262|consen 122 MTVRVEPLVTMGQISKFLIPKGYTLAV-LPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNE 200 (543)
T ss_pred ceEEecCCccHHHHHHHhccCCceeee-ecccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcc
Confidence 489999999999999999999987755 4667788999999999999999999999999999999999999996 4568
Q ss_pred CcchhhhhhcCCCCCeeEEEEEEEEEeecCceE
Q 042223 79 GEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTV 111 (376)
Q Consensus 79 ~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~ 111 (376)
|+|||.|+-.+ .|++|..+.+|+|+.|..+.+
T Consensus 201 ~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 201 HSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred cCceEEEcccc-cCchheeeeeEEEEEeccceE
Confidence 99999999999 899999999999999998744
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.41 E-value=2.9e-13 Score=128.31 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=82.5
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccc-cccccEeEEEEEcCCCcEEecCCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFG-LAADHVVDAHLIDAEGRLLDRKSMG 79 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G-~~~D~v~~~~vV~a~G~~~~~~~~~ 79 (376)
.+|+||||+.|.+|.+++.++|+ .|.+..+|+-| ++||+++...+.|| ..+|+|++++||++||++++-. +
T Consensus 92 ~~v~v~aG~~~~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~ 163 (298)
T PRK13905 92 NRITAGAGAPLIKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--N 163 (298)
T ss_pred CEEEEECCCcHHHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--H
Confidence 36899999999999999999884 24455566655 67777777777887 7999999999999999999721 3
Q ss_pred cchhhhhhcCCCC-CeeEEEEEEEEEeecC
Q 042223 80 EDLFWSIRGGGGA-SFGVVVAWKVRLVTVP 108 (376)
Q Consensus 80 ~dLfwalrG~Gg~-~fGvVt~~~~~~~p~~ 108 (376)
.|++|+.|+++.. .+||||+++||++|..
T Consensus 164 ~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 164 EELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred HHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 5999999998544 4899999999999974
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.39 E-value=3.2e-13 Score=113.60 Aligned_cols=74 Identities=30% Similarity=0.430 Sum_probs=67.2
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD 74 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~ 74 (376)
++++||+|++|.||+++|.++|+.+.+..+.+.++++||++.+||+|+.+++||+.+|+|+++|+|++||++++
T Consensus 64 ~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 64 GTVTVGAGVTWGDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp TEEEEETTSBHHHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred eeEEEeccccchhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 47999999999999999999985544457888999999999999999999999999999999999999999986
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.32 E-value=6.2e-11 Score=110.91 Aligned_cols=111 Identities=21% Similarity=0.288 Sum_probs=96.3
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe--c--C
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD--R--K 76 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~--~--~ 76 (376)
+++++.+||.+.++...|+++|+.+.+.-|.-.++-|||.+....-|..--+||-..-+|+.+|||+|+|+|+. + +
T Consensus 154 Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slR 233 (511)
T KOG1232|consen 154 GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLR 233 (511)
T ss_pred ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhc
Confidence 36789999999999999999998777778888888899999988888877899999999999999999999995 1 3
Q ss_pred CCCc--chhhhhhcCCCCCeeEEEEEEEEEeecCceEE
Q 042223 77 SMGE--DLFWSIRGGGGASFGVVVAWKVRLVTVPSTVT 112 (376)
Q Consensus 77 ~~~~--dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~ 112 (376)
..|. ||=.-..|+ .|++||||++.+-+.|.|+.+.
T Consensus 234 KDNTgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn 270 (511)
T KOG1232|consen 234 KDNTGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVN 270 (511)
T ss_pred ccCccccchhheecC-CceeeEEeeEEEeecCCCccee
Confidence 3344 777788899 8999999999999999988653
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.01 E-value=2.3e-09 Score=102.86 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=94.1
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceecc-CCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCC
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFP-AGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSM 78 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~-~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~ 78 (376)
+++||++|+++.||.+++++.|+ +++ .|.-..+.|||++..|.||-.-.-++.-...++...++.++|.++. +++.
T Consensus 112 ~tvTV~aGirlrQLie~~~~~Gl--sL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~ 189 (518)
T KOG4730|consen 112 KTVTVQAGIRLRQLIEELAKLGL--SLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEK 189 (518)
T ss_pred ceEEeccCcCHHHHHHHHHhcCc--cccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccC
Confidence 48999999999999999999874 444 5777778899999999999755557776667777777789999887 8888
Q ss_pred CcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEE
Q 042223 79 GEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTV 116 (376)
Q Consensus 79 ~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~ 116 (376)
.||+|.|.|=+ -|-+|||.++|+++.|.-+....+.+
T Consensus 190 dpe~F~AAkvS-LG~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 190 DPELFNAAKVS-LGVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred CHHHHhhhhhc-ccceeEEEEEEEEEEecceeeeEEEE
Confidence 89999999998 67899999999999998775544443
No 19
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.01 E-value=1.4e-09 Score=108.25 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred CeEEEcCCCcHHHHHHHHHHcCCceecc-CCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcE-------
Q 042223 1 KIECGQSGATLGQLYYRIAERSKNLGFP-AGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRL------- 72 (376)
Q Consensus 1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~-~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~------- 72 (376)
++++|+||+++.+|.++|.++|+..... +.+|-.+.|||.+..+.-|....+||...++++. ++|++||++
T Consensus 107 ~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lg 185 (564)
T PRK11183 107 KQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLG 185 (564)
T ss_pred CeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccC
Confidence 3689999999999999999998643221 2333344688998888888899999999999999 999999999
Q ss_pred Ee--cCC-------------------------------------------CCcchhhhh--hcCCCCCeeEEEEEEEEEe
Q 042223 73 LD--RKS-------------------------------------------MGEDLFWSI--RGGGGASFGVVVAWKVRLV 105 (376)
Q Consensus 73 ~~--~~~-------------------------------------------~~~dLfwal--rG~Gg~~fGvVt~~~~~~~ 105 (376)
+. ... -|.||---+ .|+ .|.+||+ +++++++
T Consensus 186 i~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtf 263 (564)
T PRK11183 186 IDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTF 263 (564)
T ss_pred cccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccc
Confidence 32 110 134777777 888 8999999 9999999
Q ss_pred ecCceEEEEEEEecc
Q 042223 106 TVPSTVTLFTVIRNM 120 (376)
Q Consensus 106 p~~~~~~~~~~~~~~ 120 (376)
|.|+...++-+.++.
T Consensus 264 p~p~~~~vf~ig~n~ 278 (564)
T PRK11183 264 PAEKNTQVFYIGTND 278 (564)
T ss_pred cCCCcceEEEEeCCC
Confidence 999876666665553
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.99 E-value=7.6e-10 Score=104.78 Aligned_cols=98 Identities=23% Similarity=0.189 Sum_probs=81.4
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCcccc-ccccccccEeEEEEEcCCCcEEecCCCCc
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMG-KFGLAADHVVDAHLIDAEGRLLDRKSMGE 80 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~-~~G~~~D~v~~~~vV~a~G~~~~~~~~~~ 80 (376)
+++||||+.|.+|..++.++|+ .|.+..+|+.| ++||+...+.+ +||..+|+|+++++|++|| +++- ...
T Consensus 98 ~v~v~AG~~~~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~ 168 (302)
T PRK14652 98 RLVLGAGAPISRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAA 168 (302)
T ss_pred EEEEECCCcHHHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehh
Confidence 6899999999999999999874 27888888877 89999998876 6779999999999999999 4431 136
Q ss_pred chhhhhhcCCCCCeeEEEEEEEEEeecC
Q 042223 81 DLFWSIRGGGGASFGVVVAWKVRLVTVP 108 (376)
Q Consensus 81 dLfwalrG~Gg~~fGvVt~~~~~~~p~~ 108 (376)
|+.|+.|++.-+..||||+++||++|..
T Consensus 169 e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 169 ALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred hcCcccceeccCCCeEEEEEEEEEecCC
Confidence 9999999973122389999999999854
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.85 E-value=6e-09 Score=100.64 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=82.5
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcC-CCcEEecCCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDA-EGRLLDRKSMG 79 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a-~G~~~~~~~~~ 79 (376)
+++||+|+.|.+|..++.++|+. +-...|.+++||.+.+.-.|++|. ...|.|.++++|+. +|++++-. +
T Consensus 95 ~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~------ei~D~l~sV~vvd~~~G~~~~~~--~ 166 (363)
T PRK13903 95 LVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQ------EVSDTITRVRLLDRRTGEVRWVP--A 166 (363)
T ss_pred EEEEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhHH------HHhhhEeEEEEEECCCCEEEEEE--H
Confidence 68999999999999999999853 446789999998888888887764 56799999999985 49999721 5
Q ss_pred cchhhhhhcC--CCCCeeEEEEEEEEEeecC
Q 042223 80 EDLFWSIRGG--GGASFGVVVAWKVRLVTVP 108 (376)
Q Consensus 80 ~dLfwalrG~--Gg~~fGvVt~~~~~~~p~~ 108 (376)
.||+|+.|++ .+++++|||+++||++|..
T Consensus 167 ~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 167 ADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 7999999995 1236899999999999863
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=98.79 E-value=2.1e-08 Score=94.41 Aligned_cols=113 Identities=20% Similarity=0.317 Sum_probs=96.3
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCc----ccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe---
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPT----VGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD--- 74 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~----vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~--- 74 (376)
|+++++|.+-.+|-+.|.+.|+ ..|.-|+ .++||++..-..|.--++||-.-|-|+-+++|++.|.|-.
T Consensus 230 T~~~eaGIvGQ~LERqL~~~G~----t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq 305 (613)
T KOG1233|consen 230 TCRAEAGIVGQSLERQLNKKGF----TCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQ 305 (613)
T ss_pred eEEEecCcchHHHHHHHhhcCc----ccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhc
Confidence 7899999999999999999874 3455553 3689999999999999999999999999999999998773
Q ss_pred --cCCCCcchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEec
Q 042223 75 --RKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRN 119 (376)
Q Consensus 75 --~~~~~~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~ 119 (376)
.-+..||+-.-+.|+ .|++||||++++|..|+|......++.|+
T Consensus 306 ~PRmS~GPDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 306 VPRMSSGPDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred CCcccCCCCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccC
Confidence 235679999999999 89999999999999999986544455554
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=98.62 E-value=5.3e-08 Score=91.64 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=81.5
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccc-cEeEEEEEcCCCcEEecCCCCc
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAAD-HVVDAHLIDAEGRLLDRKSMGE 80 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D-~v~~~~vV~a~G~~~~~~~~~~ 80 (376)
+++||||+.|.+|..++.++|+ +|.+..+|+.| ++||+...+.+.||..++ .|++++||++||++++-. +.
T Consensus 75 ~v~v~aG~~~~~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~ 146 (284)
T TIGR00179 75 YVHVGGGENWHKLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NE 146 (284)
T ss_pred EEEEEcCCcHHHHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HH
Confidence 6899999999999999999874 48888899988 899999999999999997 579999999999998721 35
Q ss_pred chhhhhhcCCCC-Ce-eEEEEEEEEEee
Q 042223 81 DLFWSIRGGGGA-SF-GVVVAWKVRLVT 106 (376)
Q Consensus 81 dLfwalrG~Gg~-~f-GvVt~~~~~~~p 106 (376)
|+-|+-|-+.-- .. .||++.+|++.+
T Consensus 147 ~~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 147 QLGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred HccccCCccccCCCCcEEEEEEEEEecc
Confidence 888999987311 12 699999999854
No 24
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.62 E-value=7.8e-08 Score=91.31 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=72.9
Q ss_pred eEEEcCCCcHHHHHHHHHHcCC-ceeccCCCCCcccccccccCCCCCccccccc-cccccEeEEEEEcCCCcEEe-cCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSK-NLGFPAGVCPTVGVGGHFSGGGYGFMMGKFG-LAADHVVDAHLIDAEGRLLD-RKSM 78 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~-~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G-~~~D~v~~~~vV~a~G~~~~-~~~~ 78 (376)
+++||+|+.+.+|.+++.++|+ ++.++.|.+.+|| |+.....+.|| ...|.+.+++||++||++++ +
T Consensus 98 ~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--- 167 (305)
T PRK12436 98 TIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--- 167 (305)
T ss_pred EEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEE---
Confidence 6899999999999999999985 3344556555544 33333344476 66688889999999999997 4
Q ss_pred CcchhhhhhcCCC-CCeeEEEEEEEEEeec
Q 042223 79 GEDLFWSIRGGGG-ASFGVVVAWKVRLVTV 107 (376)
Q Consensus 79 ~~dLfwalrG~Gg-~~fGvVt~~~~~~~p~ 107 (376)
+.|+.|+.|.+.- .+..||++++||+.+.
T Consensus 168 ~~e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 168 KEAFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred HHHhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 3589999999732 2357999999999875
No 25
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.60 E-value=7.1e-08 Score=91.63 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=79.9
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccc-cccccEeEEEEEcCCCcEEecCCCCc
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFG-LAADHVVDAHLIDAEGRLLDRKSMGE 80 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G-~~~D~v~~~~vV~a~G~~~~~~~~~~ 80 (376)
+++||||+.|.+|.+++.++|+ .|....+|+.| ++||+...+.+.|| ..+|+|++++||++||++++-. +.
T Consensus 98 ~v~v~aG~~~~~l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~ 169 (307)
T PRK13906 98 AIIAGSGAAIIDVSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TK 169 (307)
T ss_pred EEEEECCCcHHHHHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HH
Confidence 6899999999999999999874 25566678877 78888888888995 8899999999999999999721 25
Q ss_pred chhhhhhcCCCCC-eeEEEEEEEEEeec
Q 042223 81 DLFWSIRGGGGAS-FGVVVAWKVRLVTV 107 (376)
Q Consensus 81 dLfwalrG~Gg~~-fGvVt~~~~~~~p~ 107 (376)
|+.|+-|-..-.. --||++++|++.|.
T Consensus 170 e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 170 ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 7889999873211 24999999999863
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.31 E-value=1.1e-06 Score=83.12 Aligned_cols=97 Identities=23% Similarity=0.170 Sum_probs=77.2
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCC-CCCccccccccccccEeEEEEEcCCCcEEe-cCCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGG-GYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMG 79 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lgg-G~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~ 79 (376)
+++||||+.|.+|..++.++|+ .|-...+||.| ++|| .++-.....+..+|.|.++++++.+|++++ + +
T Consensus 85 ~v~v~AG~~~~~l~~~~~~~GL-----~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~---~ 155 (295)
T PRK14649 85 EVWVEAGAPMAGTARRLAAQGW-----AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS---V 155 (295)
T ss_pred EEEEEcCCcHHHHHHHHHHcCC-----ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe---H
Confidence 6899999999999999999874 36667889988 7777 666666666789999999999999999987 3 2
Q ss_pred cchhhhhhcCCCCC---------eeEEEEEEEEEeec
Q 042223 80 EDLFWSIRGGGGAS---------FGVVVAWKVRLVTV 107 (376)
Q Consensus 80 ~dLfwalrG~Gg~~---------fGvVt~~~~~~~p~ 107 (376)
.||+|+.|-+.--. --||++.+|++.|.
T Consensus 156 ~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 156 HDFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred HHcCcccceeecccccccccccCCeEEEEEEEEECCC
Confidence 49999988762111 12888888888765
No 27
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.46 E-value=0.00026 Score=66.89 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=67.5
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCcccccccc-ccccEeEEEEEcCCCcEEecCCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFGL-AADHVVDAHLIDAEGRLLDRKSMG 79 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~-~~D~v~~~~vV~a~G~~~~~~~~~ 79 (376)
+++||||+.|.+|..++.++|+. +-...|.-.| |||.+ -...+.||. ..|.|.++++++ +|++++-. +
T Consensus 94 ~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT--VGGAv-----~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~ 163 (297)
T PRK14653 94 KIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS--VGGAV-----YMNAGAYGWETAENIVEVVAYD-GKKIIRLG--K 163 (297)
T ss_pred EEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh--HHHHH-----HHhCccCchhhheeEEEEEEEC-CCEEEEEc--h
Confidence 58999999999999999999862 2222233222 44433 334455887 889999999999 78887621 2
Q ss_pred cchhhhhhcCC---CCCeeEEEEEEEEEeecC
Q 042223 80 EDLFWSIRGGG---GASFGVVVAWKVRLVTVP 108 (376)
Q Consensus 80 ~dLfwalrG~G---g~~fGvVt~~~~~~~p~~ 108 (376)
.|+-|..|-.- .+.+ |||+++||++|..
T Consensus 164 ~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 164 NEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred hhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 37888888652 1234 9999999999853
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.70 E-value=0.0045 Score=58.58 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=69.3
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCccccccc-cccccEeEEEEEcCCCcEEecCCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFG-LAADHVVDAHLIDAEGRLLDRKSMG 79 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G-~~~D~v~~~~vV~a~G~~~~~~~~~ 79 (376)
.+++|+|+.|.+|...+.++|+. +-...|.-.||| |..=...+.|| -..|.|.++++++.+|++++-. +
T Consensus 95 ~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~ 165 (302)
T PRK14650 95 QIVAECGTNFEDLCKFALQNELSGLEFIYGLPGTLG-------GAIWMNARCFGNEISEILDKITFIDEKGKTICKK--F 165 (302)
T ss_pred EEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcchh-------HHHHhhCCccccchheeEEEEEEEECCCCEEEEE--H
Confidence 58999999999999999999853 333334444433 22223455676 4569999999999999998621 3
Q ss_pred cchhhhhhcCCCCC-eeEEEEEEEEEeecC
Q 042223 80 EDLFWSIRGGGGAS-FGVVVAWKVRLVTVP 108 (376)
Q Consensus 80 ~dLfwalrG~Gg~~-fGvVt~~~~~~~p~~ 108 (376)
.|+-|+-|-+.-.. =.||++++|++.|..
T Consensus 166 ~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 166 KKEEFKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred HHcCcccccccCCCCCEEEEEEEEEEcCCC
Confidence 58889999873110 149999999998854
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.56 E-value=0.0058 Score=58.69 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=68.0
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCcccccccc-ccccEeEEEEEcCC-CcEEe-cCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFGL-AADHVVDAHLIDAE-GRLLD-RKS 77 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~-~~D~v~~~~vV~a~-G~~~~-~~~ 77 (376)
++++++|+.|.+|...+.++|+. +-...|.-.|| ||..=...+.||. ..|.|.+++|++.+ |++++ +
T Consensus 85 ~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTV-------GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~-- 155 (334)
T PRK00046 85 YLHVGAGENWHDLVLWTLQQGMPGLENLALIPGTV-------GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS-- 155 (334)
T ss_pred EEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcch-------hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--
Confidence 58899999999999999998853 22233333333 2223334566764 45899999999987 99887 3
Q ss_pred CCcchhhhhhcCCCCC----eeEEEEEEEEEeec
Q 042223 78 MGEDLFWSIRGGGGAS----FGVVVAWKVRLVTV 107 (376)
Q Consensus 78 ~~~dLfwalrG~Gg~~----fGvVt~~~~~~~p~ 107 (376)
+.|+.|+-|-+.-.. =-||++++|++.|-
T Consensus 156 -~~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 156 -AAECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred -HHHcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 358889888762111 23999999999985
No 30
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.014 Score=54.55 Aligned_cols=96 Identities=24% Similarity=0.320 Sum_probs=69.8
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCcccccccc-ccccEeEEEEEcCCCcEEe-cCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFGL-AADHVVDAHLIDAEGRLLD-RKSM 78 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~-~~D~v~~~~vV~a~G~~~~-~~~~ 78 (376)
.+++|+|+.|.+|...+.++|+. +-...|.-.||| |..=...+.||- ..|.+.++++++.+|++.+ +
T Consensus 84 ~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvG-------gav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--- 153 (291)
T COG0812 84 LIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGSVG-------GAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--- 153 (291)
T ss_pred eEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcccc-------hhhhccCcccccchheeEEEEEEEcCCCCEEEEE---
Confidence 68999999999999999998853 323334444433 222234455664 4588999999999999997 4
Q ss_pred CcchhhhhhcCCCC-CeeEEEEEEEEEeec
Q 042223 79 GEDLFWSIRGGGGA-SFGVVVAWKVRLVTV 107 (376)
Q Consensus 79 ~~dLfwalrG~Gg~-~fGvVt~~~~~~~p~ 107 (376)
+.||-|+-|-+.-. ...||++++||+.|-
T Consensus 154 ~~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 154 AEELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred HHHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 35888999987321 228999999999885
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.85 E-value=0.029 Score=52.36 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=65.4
Q ss_pred EEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCccccccc-cccccEeEEEEEcCCCcEEe-cCCCCc
Q 042223 4 CGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFG-LAADHVVDAHLIDAEGRLLD-RKSMGE 80 (376)
Q Consensus 4 ~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G-~~~D~v~~~~vV~a~G~~~~-~~~~~~ 80 (376)
++++|+.|.+|..++.++|+. +-...|.-.||| |..=...+.|| -..|.|.++++++ +|++++ + +.
T Consensus 75 ~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~---~~ 143 (273)
T PRK14651 75 WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVG-------GAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS---PD 143 (273)
T ss_pred EEECCCcHHHHHHHHHHCCCcchhhhcCCCcchh-------hHHHhhCCccccChheeEEEEEEEE-CCCEEEEE---HH
Confidence 489999999999999999853 333334334432 22223445566 4559999999997 899887 3 35
Q ss_pred chhhhhhcCCCCCeeEEEEEEEEEeec
Q 042223 81 DLFWSIRGGGGASFGVVVAWKVRLVTV 107 (376)
Q Consensus 81 dLfwalrG~Gg~~fGvVt~~~~~~~p~ 107 (376)
|+.|+-|-+.-..=-||++++||+.|.
T Consensus 144 e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 144 ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred HccccccccCCCCCEEEEEEEEEECCC
Confidence 888999887322113999999999875
No 32
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=95.84 E-value=0.0064 Score=55.33 Aligned_cols=80 Identities=8% Similarity=0.113 Sum_probs=49.0
Q ss_pred ceEEEEEEEEeCCCCchhHHHHHHHHHHhccccCCCCCCCceeccCCCCCCCCCCCCCCcccccchhhhhhhhh-cHHHH
Q 042223 266 NIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKN-NFDRL 344 (376)
Q Consensus 266 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~Y~N~~d~~~~~~~~~~~~~~~~~~~~~~y~g~-n~~rL 344 (376)
...|+.+...-.+++..+...++.+++.+.+..+ +|+-.-+++... ....|-...+|+ .+.-+
T Consensus 167 g~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gG~is~eHG~G~-----------~k~~~~~~~~~~~~~~~~ 230 (248)
T PF02913_consen 167 GNLHLYILFDPRDPEEPERAEALWDELYELVLEL-----GGSISAEHGIGK-----------LKKPYLEEEYGPAALRLM 230 (248)
T ss_dssp CEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHT-----T-BBSSSSGGGH-----------HHHHHHCHHCHHHHHHHH
T ss_pred CeEEEEeecccchHHHHHHHHHHHHHHHHHHHhc-----ccccccccchhh-----------hhHHHHHHhcchHHHHHH
Confidence 3455554433334455666777888877766655 455555655431 122344455665 79999
Q ss_pred HHhHhccCCCCCCCCCC
Q 042223 345 VHVKTTVDPHNFFRNEQ 361 (376)
Q Consensus 345 ~~iK~kyDP~nvF~~~~ 361 (376)
++||+.+||+|+++..+
T Consensus 231 ~~iK~~~DP~~ilNPGk 247 (248)
T PF02913_consen 231 RAIKQAFDPNGILNPGK 247 (248)
T ss_dssp HHHHHHH-TTS-BSTTG
T ss_pred HHhhhccCCccCCCCCC
Confidence 99999999999998753
No 33
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=95.75 E-value=0.018 Score=53.70 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=25.4
Q ss_pred chhhhhhhhhcHHHHHHhHhccCCCCCCCCCCCC
Q 042223 330 SIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSI 363 (376)
Q Consensus 330 ~~~~~~y~g~n~~rL~~iK~kyDP~nvF~~~~~I 363 (376)
++|. .-||..|+|+++.|++|||.+++...|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 4895 67899999999999999999999999987
No 34
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.50 E-value=0.14 Score=49.48 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=65.6
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCcccccccc-ccccEeEEEEE--------------
Q 042223 2 IECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGL-AADHVVDAHLI-------------- 66 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~-~~D~v~~~~vV-------------- 66 (376)
.+++|+|+.|.+|...+.++|+. |.-.-+||-|- .||..=...+.||. ..|.|.+++++
T Consensus 96 ~v~agAG~~~~~Lv~~~~~~gl~-----GlE~laGIPGT-VGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~ 169 (354)
T PRK14648 96 LVHAGAGLPVAALLAFCAHHALR-----GLETFAGLPGS-VGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPE 169 (354)
T ss_pred EEEEEeCCcHHHHHHHHHHcCCc-----chhhhcCCCcc-hhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccc
Confidence 47899999999999999998853 33333333221 23333335566774 45899999999
Q ss_pred ------cCCCcE-------------EecCCCCcchhhhhhcCCCCC---------eeEEEEEEEEEeecC
Q 042223 67 ------DAEGRL-------------LDRKSMGEDLFWSIRGGGGAS---------FGVVVAWKVRLVTVP 108 (376)
Q Consensus 67 ------~a~G~~-------------~~~~~~~~dLfwalrG~Gg~~---------fGvVt~~~~~~~p~~ 108 (376)
+.+|++ .+ -.+.|+-|+-|-+.--. --||++++|++.|..
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 170 VRKNAQDKRGECLGLDGGPFTCSSFQT--VFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cccccccCCCceecccccccccccceE--ecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 567776 22 12357788888763111 139999999998753
No 35
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.88 E-value=0.19 Score=46.47 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=63.0
Q ss_pred eEEEcCCCcHHHHHHHHHHcCCc-eeccCCCCCcccccccccCCCCCccccccc-cccccEeEEEEEcCCCcEEecCCCC
Q 042223 2 IECGQSGATLGQLYYRIAERSKN-LGFPAGVCPTVGVGGHFSGGGYGFMMGKFG-LAADHVVDAHLIDAEGRLLDRKSMG 79 (376)
Q Consensus 2 ~~~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~lggG~g~~s~~~G-~~~D~v~~~~vV~a~G~~~~~~~~~ 79 (376)
++++++|+.|.+|...+.++|+. +-...|.-.|| ||.+. ...+.|| -..|.|.++++++ |+ + .+
T Consensus 68 ~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGtV--GGAv~-----mNaGa~g~ei~d~l~~V~~~~--~~-~----~~ 133 (257)
T PRK13904 68 CLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGTL--GGLVK-----MNAGLKEYEISNNLESICTNG--GW-I----EK 133 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCccH--HHHHH-----hcCCcCccchheeEEEEEEEe--eE-E----eH
Confidence 58999999999999999998853 33333443433 33332 2344566 4559999999997 42 2 23
Q ss_pred cchhhhhhcCCCCCeeEEEEEEEEEeecC
Q 042223 80 EDLFWSIRGGGGASFGVVVAWKVRLVTVP 108 (376)
Q Consensus 80 ~dLfwalrG~Gg~~fGvVt~~~~~~~p~~ 108 (376)
.|+.|+-|-.. --.||++++||+.|..
T Consensus 134 ~e~~f~YR~S~--~~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 134 EDIGFGYRSSG--INGVILEARFKKTHGF 160 (257)
T ss_pred HHCcccccCcC--CCcEEEEEEEEECCCC
Confidence 58888888872 2249999999998854
No 36
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=93.69 E-value=0.25 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.4
Q ss_pred hcHHHHHHhHhccCCCCCCCCC
Q 042223 339 NNFDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 339 ~n~~rL~~iK~kyDP~nvF~~~ 360 (376)
.++++.++||+++||+++|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6899999999999999999865
No 37
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=92.49 E-value=0.22 Score=46.19 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=19.2
Q ss_pred hhhhhhhhhcHHHHHHhHhccCCCCCCCCC
Q 042223 331 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 331 ~~~~~y~g~n~~rL~~iK~kyDP~nvF~~~ 360 (376)
...+.| +++++..++|+++||+++|.+.
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344444 8999999999999999999864
No 38
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=83.24 E-value=1.9 Score=44.54 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=22.6
Q ss_pred hhhhhhhhcHHHHHHhHhccCCCCCCCCC
Q 042223 332 WGKKYFKNNFDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 332 ~~~~y~g~n~~rL~~iK~kyDP~nvF~~~ 360 (376)
..+.| .++++.++||+++||+++|.++
T Consensus 477 l~~~Y--P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 477 VIRKY--PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred HHHhC--CCHHHHHHHHHhcCCCCccCCH
Confidence 33444 5999999999999999999865
No 39
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=66.27 E-value=4.1 Score=39.63 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.3
Q ss_pred hc-HHHHHHhHhccCCCCCCCCC
Q 042223 339 NN-FDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 339 ~n-~~rL~~iK~kyDP~nvF~~~ 360 (376)
.+ .+-.++||+++||+++|+..
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnpg 346 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNPG 346 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCCC
Confidence 44 78899999999999999865
No 40
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=56.23 E-value=5.7 Score=39.43 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=18.9
Q ss_pred hcHHHHHHhHhccCCCCCCC
Q 042223 339 NNFDRLVHVKTTVDPHNFFR 358 (376)
Q Consensus 339 ~n~~rL~~iK~kyDP~nvF~ 358 (376)
.|+.+..++|+++||+++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 69999999999999999994
No 41
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=40.85 E-value=16 Score=37.68 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=18.4
Q ss_pred HHHHHHhHhccCCCCCCCCC
Q 042223 341 FDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 341 ~~rL~~iK~kyDP~nvF~~~ 360 (376)
+++.++|++++||+++|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78899999999999999875
No 42
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=37.27 E-value=20 Score=37.29 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=22.2
Q ss_pred hhhhhhhhhcHHHHHHhHhccCCCCCCCCC
Q 042223 331 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 331 ~~~~~y~g~n~~rL~~iK~kyDP~nvF~~~ 360 (376)
.+.+.| . +++.+++++++||+++|.++
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 444444 4 99999999999999999875
No 43
>PHA02087 hypothetical protein
Probab=36.58 E-value=50 Score=23.72 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=17.3
Q ss_pred ccccccEeEEEEEcCCCcEEe
Q 042223 54 GLAADHVVDAHLIDAEGRLLD 74 (376)
Q Consensus 54 G~~~D~v~~~~vV~a~G~~~~ 74 (376)
|+-..-++...+|++||..+.
T Consensus 38 ~~d~nk~v~y~lvdsdg~~ie 58 (83)
T PHA02087 38 KFDPNKLVQYMLVDSDGVKIE 58 (83)
T ss_pred cCCCccceeEEEEcCCCcEEE
Confidence 455567889999999999997
No 44
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=36.40 E-value=25 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.2
Q ss_pred hhcHHHHHHhHhc
Q 042223 338 KNNFDRLVHVKTT 350 (376)
Q Consensus 338 g~n~~rL~~iK~k 350 (376)
.+=|+||++||.-
T Consensus 10 ~eFY~rlk~Ike~ 22 (28)
T PF12108_consen 10 SEFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3568999999974
No 45
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=35.94 E-value=14 Score=25.70 Aligned_cols=34 Identities=26% Similarity=0.664 Sum_probs=22.9
Q ss_pred chhhhhhhhhcHHHHHHhHhccCCCCCCCCCCCCCCCCCC
Q 042223 330 SIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSSR 369 (376)
Q Consensus 330 ~~~~~~y~g~n~~rL~~iK~kyDP~nvF~~~~~I~p~~~~ 369 (376)
+.|.+ +.++.+...-.+.+||.-+|.. |+|....
T Consensus 19 P~WA~---~~~L~~~L~~Q~~~Dpd~IFG~---~~~~~Le 52 (57)
T PF03941_consen 19 PSWAQ---SPNLRQALKKQQNIDPDEIFGP---IPPLNLE 52 (57)
T ss_dssp -GGGS---HHHHHHHHHHHHHS-HHHHCTT---SB---CC
T ss_pred CCCcC---cHHHHHHHHHHhccCHHHHcCC---CCCCCHH
Confidence 46876 5789888888899999999974 4554443
No 46
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=29.82 E-value=33 Score=26.59 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHhHhccCCCCCCC
Q 042223 344 LVHVKTTVDPHNFFR 358 (376)
Q Consensus 344 L~~iK~kyDP~nvF~ 358 (376)
..+|.+||||+|.+.
T Consensus 78 w~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 78 WEELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHHTTT-TTH
T ss_pred HHHHHHHHCCCcchh
Confidence 456789999998763
No 47
>PF14658 EF-hand_9: EF-hand domain
Probab=26.59 E-value=45 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=13.5
Q ss_pred HHHHHhHhccCCCCC
Q 042223 342 DRLVHVKTTVDPHNF 356 (376)
Q Consensus 342 ~rL~~iK~kyDP~nv 356 (376)
.+|+.+.+.+||++-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 499999999999986
No 48
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=23.96 E-value=48 Score=25.51 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=10.0
Q ss_pred CCCeeEEEEEEE
Q 042223 91 GASFGVVVAWKV 102 (376)
Q Consensus 91 g~~fGvVt~~~~ 102 (376)
-.+|||||+||-
T Consensus 67 ~~~fgvItsFTa 78 (109)
T PF04753_consen 67 DKYFGVITSFTA 78 (109)
T ss_pred ccceeeEEeeeh
Confidence 468999999974
No 49
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=22.55 E-value=42 Score=32.83 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.6
Q ss_pred cHHHHHHhHhccCCCCCCCCC
Q 042223 340 NFDRLVHVKTTVDPHNFFRNE 360 (376)
Q Consensus 340 n~~rL~~iK~kyDP~nvF~~~ 360 (376)
-..-|+++|+..||.|+|...
T Consensus 590 G~~llka~K~~lDP~NIFa~~ 610 (613)
T KOG1233|consen 590 GIALLKAIKSELDPANIFASA 610 (613)
T ss_pred hHHHHHHHHHhcChhhhcccc
Confidence 478899999999999999764
No 50
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=21.20 E-value=93 Score=28.11 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=37.2
Q ss_pred ccccccccCCCCCcccccc-ccccccEe------------EEEEEcCCCcEEe-cCCCCcchhhhhhcCCCCCeeEEEEE
Q 042223 35 VGVGGHFSGGGYGFMMGKF-GLAADHVV------------DAHLIDAEGRLLD-RKSMGEDLFWSIRGGGGASFGVVVAW 100 (376)
Q Consensus 35 vgvgG~~lggG~g~~s~~~-G~~~D~v~------------~~~vV~a~G~~~~-~~~~~~dLfwalrG~Gg~~fGvVt~~ 100 (376)
=|+||++.|--.|.++|+| ||.+-++. +-+|+. +|+... +..+-+|- ..- .-|--+.+|
T Consensus 7 NGlGGYas~Tv~G~~TR~YHGLLvaal~pP~~R~~lls~l~e~v~~-~g~~~~L~t~~~~~~-~~p-----~G~~~L~~F 79 (223)
T PF12439_consen 7 NGLGGYASGTVIGANTRRYHGLLVAALNPPVGRYVLLSKLDETVIV-DGRSYPLSTNEYPDG-VYP-----DGYKYLESF 79 (223)
T ss_pred CCCCceeeccccCCCCcccceEEEecCCCCCcCEEEEecceeEEEE-CCeEEEeEccccCCC-cCc-----chheeeeEE
Confidence 3788999988889888876 87654421 223333 676665 43443443 111 114456666
Q ss_pred EEEEeecC
Q 042223 101 KVRLVTVP 108 (376)
Q Consensus 101 ~~~~~p~~ 108 (376)
.+. |.|
T Consensus 80 ~~~--~~P 85 (223)
T PF12439_consen 80 RLE--PLP 85 (223)
T ss_pred EcC--CCe
Confidence 665 554
Done!