BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042225
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 43 IEDVPKVSNDKEKCR--VCESRNGMVVVGEVRFTCGICLDTMKEES-------STKCGHV 93
+ D K +N CR + R + +G +C IC+D E ST+CGHV
Sbjct: 41 LRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHV 100
Query: 94 FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126
FC C+ D+++ CPTCR +++ + I+
Sbjct: 101 FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 67 VVGEVRFTCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119
+G +C IC+D E ST+CGHVFC C+ D+++ CPTCR +++ +
Sbjct: 2 AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61
Query: 120 SIRRIFF 126
I+
Sbjct: 62 RYHPIYI 68
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D RV E +N + + ++ C ICL+ +KE STKC H+FCK C++ + + +
Sbjct: 2 DLSALRVEEVQNVINAMQKI-LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIRR 123
CP C+ ++ RS++
Sbjct: 61 CPLCKNDITKRSLQE 75
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CI+ A+R + CPTCR ++ S RS+R
Sbjct: 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 107
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPT 111
E ++ C ICL ++E T CGH FCK+CI+ +IR G +CP
Sbjct: 23 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPT 111
E ++ C ICL ++E T CGH FCK+CI+ +IR G +CP
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CI+ A+R + CPTCR ++ S RS+R
Sbjct: 54 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 106
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPT 111
E ++ C ICL ++E T CGH FCK+CI+ +IR G +CP
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CI+ A+R + CPTCR ++ S RS+R
Sbjct: 35 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 87
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 74 TCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126
+C IC+D E ST+CGHVFC C+ D+++ CPTCR +++ + I+
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 74 TCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126
+C IC+D E ST+CGHVFC C+ D+++ CPTCR +++ + I+
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 72 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPT 111
++ C ICL ++E T CGH FCK+CI+ +IR G +CP
Sbjct: 6 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 74 TCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117
+C IC+D E ST+CGHVFC C+ D+++ CPTCR +++
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRL------QGRCPTCRTRMSVRSIR 122
TC ICL+ +KE S C H FC++CI +G CP CR +++
Sbjct: 21 TCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 72 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL------QGRCPTCRTRMSVRSIR 122
TC ICL+ + + S CGH FC++C+ + + CP CR +IR
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 45 DVPKVSNDKEKCRVC--ESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDA 102
++ + +KEK + E + M V E C IC + E + C H FC CI +
Sbjct: 35 ELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEW 94
Query: 103 IRLQGRCPTCRTRMSVRS 120
++ + CP CR + ++
Sbjct: 95 MKRKIECPICRKDIKSKT 112
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTC 112
+V +C +CL+ +KE +CGH FCK+CI R CP C
Sbjct: 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCR 113
V E C IC + E + C H FC CI + ++ + CP CR
Sbjct: 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCR 113
V E C IC + E + C H FC CI + ++ + CP CR
Sbjct: 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPTCR 113
+C IC + + T C H+FC+ CI+ +++ G CP+CR
Sbjct: 25 SCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 71 VRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTC 112
+ F C IC + TKC H FC+SC ++ R RC C
Sbjct: 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 75 CGICLDTMKEESS-TKCGHVFCKSCIVDAIRLQGRCPTCR 113
C IC + + ++ T+C H FCKSCIV RCP C
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCN 57
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRM 116
C ICL T S C HVFC C+ A L RC CR +
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCRTRMS 117
CGIC++ + E + C H CK C + CP CR R+S
Sbjct: 18 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 72 RFTCGICLDTMKEESSTKCGHVFCKSCI-------VDAIRLQGRCPTCRTRMSVRSIR 122
TC ICL+ + E S CGH C++CI V ++ + CP C S ++
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG---RCPTCRTRMSVRSIR 122
C ICLD +++ + CGH FC CI +CP C+T + +IR
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCR 113
C IC + K+ CGH+ C SC+ +G+ CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCR 113
C IC + K+ CGH+ C SC+ +G+ CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCR 113
C IC + K+ CGH+ C SC+ +G+ CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCR 113
C IC + K+ CGH+ C SC+ +G+ CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GRCPTCRTRMS----------V 118
E F C C + + + +T+C H CK C+ + + Q CP CR + +
Sbjct: 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEIL 135
Query: 119 RSIRRIFFP 127
+++ +FFP
Sbjct: 136 QTLLDLFFP 144
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCR 113
C IC + K+ CGH+ C SC+ G+ CP CR
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCRTRM 116
+G C IC + K+ CGH+ C SC+ +G+ CP CR +
Sbjct: 23 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCRTRM 116
+G C IC + K+ CGH+ C SC+ +G+ CP CR +
Sbjct: 20 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 75 CGICL-DTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRT 114
C ICL D + C H FC CI IR CP C+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKV 48
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCRTRM 116
+G C IC + K+ CGH+ C SC+ G+ CP CR +
Sbjct: 22 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 75 CGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGRCPTC 112
CGIC + +C H +C CI + + +CPTC
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCI 99
C ICLD +++ + CGH FC CI
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCI 47
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 75 CGICLDTMKEESSTKCGH-VFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFP 127
C +C + + CGH V C+SC A +LQ CP CR+R V ++ ++ P
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESC---AAQLQS-CPVCRSR--VEHVQHVYLP 68
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 90 CGHVFCKSCI-VDAIRLQGRCPTCRTRMSVRSIRRIFF 126
CGH C+SC+ + +R G CP C T + + R F
Sbjct: 26 CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 89 KCGHVFCKSCIVDAIRLQGRCPTC 112
+C H FCK+CIV + CP C
Sbjct: 33 ECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 89 KCGHVFCKSCIVDAIRLQGRCPTC 112
+C H FCK+CIV + CP C
Sbjct: 33 ECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 89 KCGHVFCKSCIVDAIRLQGRCPTC 112
+C H FCK+CIV + CP C
Sbjct: 29 ECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 90 CGHVFCKSCIVDAIRLQGRCPTCRTRMSVRS 120
C H+F SCIV + CP CR ++ ++
Sbjct: 36 CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126
TC +CLD CGH+ C C A LQ CP CR VRS R F
Sbjct: 15 TCKVCLDRAVSIVFVPCGHLVCAEC---APGLQ-LCPICRA--PVRSRVRTFL 61
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 63 NGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTC 112
+G V E ++ C C + T+CGH FC+SC+ A L P C
Sbjct: 6 SGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCM--AALLSSSSPKC 53
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GRCPTCRTRM 116
E F C C + + +T C H CK C+ + R Q CP CR +
Sbjct: 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 75 CGICLDTMKEESSTK---CGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119
C ICL ++E + C H+F + C+ + +CP CR + +
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAI 103
E ++ C C + ++ +CGH +C C+ +
Sbjct: 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASIL 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117
C IC+D + + C H FC+ CI CP CR +M+
Sbjct: 18 CCICMDG-RADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 75 CGICLDTMKEESS----TKCGHVFCKSCI--VDAIRLQG-RCPTCRTRMSVRSIRRI 124
C IC+++ EE CGH C+ C+ + A + G RCP C + S+ ++
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 70 EVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIR 122
E C C + ++E C H+FC +C+ D I CP C T ++ ++
Sbjct: 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG--CPVCYTPAWIQDLK 71
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 75 CGICLDTMK---EESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFP 127
C +CL+ K E C H F + C++ + ++ CP C M V + ++ P
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC--NMPVLQLAQLSGP 71
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 44 EDVPKVSNDKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGH-VFCKSCIVDA 102
EDV +S +++ R+ E R TC +C+D CGH V C+ C +
Sbjct: 278 EDVSGLSLEEQLRRLQEER-----------TCKVCMDKEVSVVFIPCGHLVVCQEC-APS 325
Query: 103 IRLQGRCPTCR 113
+R +CP CR
Sbjct: 326 LR---KCPICR 333
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 78 CLDTMKEESSTK--CGHVFCKSCIVDAIRLQGRCPTCR 113
C + +K + +T+ C H F K C+ ++ G CP CR
Sbjct: 47 CSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 75 CGICLDTMKEESSTK----CGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118
C +CL +++ + CGH F C+ + CP CR + V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 74 TCGICLDTMKEESSTKCGH-VFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126
TC +C+D CGH V CK C ++R +CP CR+ +++ R F
Sbjct: 26 TCKVCMDKEVSIVFIPCGHLVVCKDC-APSLR---KCPICRS--TIKGTVRTFL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,778,125
Number of Sequences: 62578
Number of extensions: 129971
Number of successful extensions: 374
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 74
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)