BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042225
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRM 116
TC +CL MK+ S +CGHVFC C++D ++ + CP CR +M
Sbjct: 244 TCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKM 286
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126
+C ICL ++ + KCGH FCKSCI+ +R +CP C+ S+ + F
Sbjct: 1237 LSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSKCPICKGFCSISEVYNFKF 1290
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG---RCPTCRTRMSVRSIRRIFFPQL 129
+C +CL+ KE +T CGH FC SC+ + +QG RCP CR VR PQL
Sbjct: 11 LSCSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVR-------PQL 63
Query: 130 Q 130
Q
Sbjct: 64 Q 64
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTCRTRMSVRSIRRIF 125
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTCRTRMSVRSIRRIF 125
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 72 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCRTRMSVRSIRRIFF 126
R C +C++ + KCGH++C +CI + ++ + R CP C+ + +++IF
Sbjct: 1047 RLICSVCMENFRNYIIIKCGHIYCNNCIFNNLKTRNRKCPQCKVPFDKKDLQKIFL 1102
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTC 112
F C IC D ++E TKCGH FC CI ++ RCP C
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKC 173
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTC 112
F C IC D ++E TKCGH FC CI ++ RCP C
Sbjct: 136 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKC 175
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPTCRTRMSVRSIR 122
TC ICLD M E S +CGH FCK CI + + G CP CR + +R++R
Sbjct: 19 TCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLR 68
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR-CPTCRTRMSVRSIR 122
TC ICLD M E S +CGH FC+ CI + + G CP CR ++++R
Sbjct: 15 TCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQNLR 64
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTCRTRMSVRSIRRIF 125
E TC ICLD +++ + CGHVFC+SC D + G CP C+ + +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPVW 69
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTCRTRMSVRSIRRIF 125
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTCRTRMSVRSIRRIF 125
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D RV E +N + + ++ C ICL+ +KE STKC H+FC+ C++ + + +
Sbjct: 2 DLSAVRVEEVQNVINAMQKI-LECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIR 122
CP C+ ++ RS++
Sbjct: 61 CPLCKNDITKRSLQ 74
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D RV E +N + + ++ C ICL+ +KE STKC H+FCK C++ + + +
Sbjct: 2 DLSAVRVEEVQNVINAMQKI-LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIRR-IFFPQL 129
CP C+ ++ RS++ F QL
Sbjct: 61 CPLCKNDITKRSLQESTRFSQL 82
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D RV E +N + + ++ C ICL+ +KE STKC H+FCK C++ + + +
Sbjct: 2 DLSALRVEEVQNVINAMQKI-LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIRR-IFFPQL 129
CP C+ ++ RS++ F QL
Sbjct: 61 CPLCKNDITKRSLQESTRFSQL 82
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D RV E +N + + ++ C ICL+ +KE STKC H+FCK C++ + + +
Sbjct: 2 DLSALRVEEVQNVINAMQKI-LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIRR-IFFPQL 129
CP C+ ++ RS++ F QL
Sbjct: 61 CPLCKNDITKRSLQESTRFSQL 82
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D RV E +N + + ++ C ICL+ +KE STKC H+FCK C++ + + +
Sbjct: 2 DLSALRVEEVQNVINAMQKI-LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIRR-IFFPQL 129
CP C+ ++ RS++ F QL
Sbjct: 61 CPLCKNDITKRSLQESTRFSQL 82
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL----------QGRCPTCRTRMSVRSIR 122
F C ICLDT + T CGH+FC CI + + Q CP C++ +++ S+
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLV 101
Query: 123 RIFFPQLQPPAS 134
++ + P+S
Sbjct: 102 PLYGRGMSSPSS 113
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 57 RVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GRCPTCR 113
RV E +N + + ++ C ICL+ +KE STKC H+FCK C++ + + +CP C+
Sbjct: 7 RVEEVQNVLNAMQKI-LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCK 65
Query: 114 TRMSVRSIRR-IFFPQL 129
++ RS++ F QL
Sbjct: 66 NDITKRSLQESTRFSQL 82
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
japonica GN=BRE1A PE=2 SV=3
Length = 884
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 43 IEDVPKVSNDKEKCRVCESRNGMVV------VGEVR--FTCGICLDTMKEESSTKCGHVF 94
IED +V + K ++R V+ V E R CGIC D KE TKC H+F
Sbjct: 792 IEDDLEVMSRKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLF 851
Query: 95 CKSCIVDAI-RLQGRCPTCRTRMSVRSIRRIF 125
C CI ++ Q RCP+C ++ I+
Sbjct: 852 CNQCIQKSLGNRQRRCPSCSLSFGANDVKPIY 883
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
indica GN=BRE1A PE=3 SV=2
Length = 884
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 43 IEDVPKVSNDKEKCRVCESRNGMVV------VGEVR--FTCGICLDTMKEESSTKCGHVF 94
IED +V + K ++R V+ V E R CGIC D KE TKC H+F
Sbjct: 792 IEDDLEVMSRKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLF 851
Query: 95 CKSCIVDAI-RLQGRCPTCRTRMSVRSIRRIF 125
C CI ++ Q RCP+C ++ I+
Sbjct: 852 CNQCIQKSLGNRQRRCPSCSLSFGANDVKPIY 883
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 50 SNDKEKCRVCESRNGMVVVGEVRFT--CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG 107
SN + K ++ +++ + +++ T C IC + ++ +T CGH +C C+++ ++
Sbjct: 58 SNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESK 117
Query: 108 RCPTCRTRM 116
CPTCR ++
Sbjct: 118 SCPTCRQKL 126
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 62 RNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR--CPTCRTRM 116
R+G + F C +CL+ + + T+CGHVFC+SCI +I+ + CP CR +
Sbjct: 24 RSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYL 80
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRT 114
C +CL T + ++T CGHVFC SCI++ + CP CRT
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRT 366
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGR---CPTCRTRMSVR 119
+C ICL+ KE +T CGH FC SC+ + +QG CP CR R
Sbjct: 11 LSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQAR 60
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 57 RVCESRNGMVVVG--EVRFT-------------CGICLDTMKEESSTKCGHVFCKSCIVD 101
R+ +N + VVG E RF C IC D+M+ CGH+F SC+
Sbjct: 308 RIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRS 367
Query: 102 AIRLQGRCPTCRTRMSVRSIRRI 124
+ CPTCR +++ R+
Sbjct: 368 WLEQDTSCPTCRMSLNIADNNRV 390
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K+ +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 44 LMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 96
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GRCPTCRTRMSVRSIRR-IFFPQ 128
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++ F Q
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
Query: 129 L 129
L
Sbjct: 82 L 82
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 52 DKEKCRVCESRNGMVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GR 108
D R+ E +N + + ++ C ICL+ +KE ST+C H+FCK C++ + + +
Sbjct: 2 DLSAVRIQEVQNVLHAMQKI-LECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 109 CPTCRTRMSVRSIR 122
CP C+ ++ RS++
Sbjct: 61 CPLCKNEITKRSLQ 74
>sp|P68907|PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3
PE=1 SV=1
Length = 1062
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 69 GEVR--FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPT-CRTRMSVRSIRRIF 125
GEV C +C +++ +T CGHVFC C++ + +G CP+ CR R+S + + +
Sbjct: 10 GEVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKELNHVL 69
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 46 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GRCPTCRTRMSVRSIR-RIFFPQ 128
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++ F Q
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSLQGSTRFSQ 81
Query: 129 L 129
L
Sbjct: 82 L 82
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-LQGRCPTCRTRM 116
F C +CL+ + + T+CGHVFC+SCI +++ + CP CR +
Sbjct: 35 FDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYL 79
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 46 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis GN=RNF125
PE=2 SV=3
Length = 232
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-LQGRCPTCRTRM 116
F C +CL+ + + T+CGHVFC+SCI +++ + CP CR +
Sbjct: 35 FDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYL 79
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 46 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 46 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 75 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GRCPTCR 113
C ICLD++ T C HVFCK CI I+ + +CP CR
Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCR 801
>sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1
Length = 194
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 73 FTCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125
+C IC+D E ST+CGHVFC C+ D+++ CPTCR +++ + I+
Sbjct: 134 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 193
Query: 126 F 126
Sbjct: 194 I 194
>sp|P78317|RNF4_HUMAN E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1
Length = 190
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 73 FTCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125
+C IC+D E ST+CGHVFC C+ D+++ CPTCR +++ + I+
Sbjct: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 189
Query: 126 F 126
Sbjct: 190 I 190
>sp|O88846|RNF4_RAT E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1
SV=1
Length = 194
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 73 FTCGICLDTMKEES-------STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125
+C IC+D E ST+CGHVFC C+ D+++ CPTCR +++ + I+
Sbjct: 134 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 193
Query: 126 F 126
Sbjct: 194 I 194
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 46 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CI+ A+R + CPTCR ++ S RS+R
Sbjct: 49 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 17 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 69
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 17 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 69
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 17 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 69
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CIV A+R + CPTCR ++ S RS+R
Sbjct: 17 LMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 69
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CI+ A+R + CPTCR ++ S RS+R
Sbjct: 49 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 73 FTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGR-CPTCRTRM-SVRSIR 122
C ICLD +K +TK C H FC CI+ A+R + CPTCR ++ S RS+R
Sbjct: 49 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,485,301
Number of Sequences: 539616
Number of extensions: 1798620
Number of successful extensions: 5939
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 5230
Number of HSP's gapped (non-prelim): 1004
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)