Query 042225
Match_columns 135
No_of_seqs 149 out of 1481
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.7 3.9E-17 1.3E-21 99.1 3.2 58 69-126 7-71 (71)
2 2xeu_A Ring finger protein 4; 99.6 8.8E-17 3E-21 95.5 3.4 56 71-126 2-64 (64)
3 2djb_A Polycomb group ring fin 99.6 5.2E-16 1.8E-20 94.7 5.7 57 68-124 11-68 (72)
4 1t1h_A Gspef-atpub14, armadill 99.6 4.1E-16 1.4E-20 96.4 5.2 58 68-125 4-62 (78)
5 2ecy_A TNF receptor-associated 99.6 4.7E-16 1.6E-20 93.3 4.9 55 67-121 10-65 (66)
6 2ecw_A Tripartite motif-contai 99.6 2.5E-15 8.7E-20 93.7 6.2 59 68-126 15-79 (85)
7 3lrq_A E3 ubiquitin-protein li 99.6 8.4E-16 2.9E-20 99.6 4.0 57 69-125 19-77 (100)
8 2ysl_A Tripartite motif-contai 99.6 1.9E-15 6.5E-20 92.1 5.3 54 68-121 16-72 (73)
9 2yur_A Retinoblastoma-binding 99.6 2E-15 6.8E-20 92.6 4.9 51 68-118 11-64 (74)
10 2kr4_A Ubiquitin conjugation f 99.6 2.6E-15 8.8E-20 94.7 5.3 58 68-125 10-67 (85)
11 2egp_A Tripartite motif-contai 99.6 5.8E-16 2E-20 95.7 2.2 58 68-125 8-72 (79)
12 2d8t_A Dactylidin, ring finger 99.6 9.6E-16 3.3E-20 93.2 3.1 54 69-122 12-65 (71)
13 1g25_A CDK-activating kinase a 99.6 2.3E-15 8E-20 90.0 4.5 57 71-127 2-64 (65)
14 3ztg_A E3 ubiquitin-protein li 99.6 4.9E-15 1.7E-19 94.2 6.1 57 68-124 9-69 (92)
15 2ecv_A Tripartite motif-contai 99.6 2.8E-15 9.4E-20 93.5 4.7 58 68-125 15-78 (85)
16 2csy_A Zinc finger protein 183 99.6 5.5E-15 1.9E-19 92.0 6.0 50 68-117 11-60 (81)
17 1wgm_A Ubiquitin conjugation f 99.5 4.5E-15 1.5E-19 96.0 4.9 58 68-125 18-76 (98)
18 2kre_A Ubiquitin conjugation f 99.5 6.3E-15 2.2E-19 95.6 5.1 58 68-125 25-82 (100)
19 2ct2_A Tripartite motif protei 99.5 6E-15 2.1E-19 92.8 4.9 54 68-121 11-71 (88)
20 2ea6_A Ring finger protein 4; 99.5 5.1E-15 1.7E-19 89.0 3.9 51 68-118 11-68 (69)
21 2y43_A E3 ubiquitin-protein li 99.5 6.7E-15 2.3E-19 94.9 3.9 56 69-124 19-75 (99)
22 4ayc_A E3 ubiquitin-protein li 99.5 4.5E-15 1.5E-19 101.3 3.2 50 70-119 51-100 (138)
23 2ect_A Ring finger protein 126 99.5 1.4E-14 4.8E-19 89.4 4.4 56 68-123 11-69 (78)
24 3fl2_A E3 ubiquitin-protein li 99.5 9.9E-15 3.4E-19 97.7 3.6 50 69-118 49-99 (124)
25 2ysj_A Tripartite motif-contai 99.5 3.1E-14 1.1E-18 84.4 5.3 45 68-112 16-63 (63)
26 3hct_A TNF receptor-associated 99.5 2E-14 6.9E-19 95.5 4.9 60 65-124 11-71 (118)
27 2ecn_A Ring finger protein 141 99.5 9.9E-15 3.4E-19 88.3 2.9 55 68-123 11-65 (70)
28 4ap4_A E3 ubiquitin ligase RNF 99.5 1.5E-14 5.2E-19 97.0 4.0 59 70-128 5-70 (133)
29 2ckl_A Polycomb group ring fin 99.5 2.3E-14 7.8E-19 93.8 4.3 51 69-119 12-63 (108)
30 2kiz_A E3 ubiquitin-protein li 99.5 6.8E-14 2.3E-18 84.3 5.3 50 69-118 11-63 (69)
31 1jm7_A BRCA1, breast cancer ty 99.5 2.7E-14 9.1E-19 93.7 3.4 56 70-125 19-77 (112)
32 4ap4_A E3 ubiquitin ligase RNF 99.5 2.2E-14 7.4E-19 96.2 3.0 58 69-126 69-133 (133)
33 2l0b_A E3 ubiquitin-protein li 99.5 1.4E-13 4.7E-18 87.6 6.3 50 69-118 37-89 (91)
34 1chc_A Equine herpes virus-1 r 99.4 9.8E-14 3.4E-18 83.3 5.0 47 71-117 4-51 (68)
35 1iym_A EL5; ring-H2 finger, ub 99.4 5.6E-14 1.9E-18 81.0 3.4 48 70-117 3-54 (55)
36 2ecm_A Ring finger and CHY zin 99.4 6.4E-14 2.2E-18 80.7 3.7 47 71-117 4-54 (55)
37 1z6u_A NP95-like ring finger p 99.4 5E-14 1.7E-18 97.5 3.7 51 69-119 75-126 (150)
38 2ecj_A Tripartite motif-contai 99.4 9.1E-14 3.1E-18 80.8 4.1 45 68-112 11-58 (58)
39 1x4j_A Ring finger protein 38; 99.4 7.7E-14 2.6E-18 85.5 3.6 50 69-118 20-72 (75)
40 1rmd_A RAG1; V(D)J recombinati 99.4 7.2E-14 2.5E-18 92.4 3.4 55 69-123 20-75 (116)
41 2ep4_A Ring finger protein 24; 99.4 9.8E-14 3.3E-18 84.7 3.8 51 68-118 11-64 (74)
42 3l11_A E3 ubiquitin-protein li 99.4 3.1E-14 1.1E-18 94.1 1.0 51 68-118 11-62 (115)
43 2yu4_A E3 SUMO-protein ligase 99.4 1.5E-13 5.1E-18 88.1 3.9 56 69-124 4-69 (94)
44 2c2l_A CHIP, carboxy terminus 99.4 2.5E-13 8.7E-18 101.2 4.8 57 68-124 204-261 (281)
45 2ckl_B Ubiquitin ligase protei 99.4 2E-13 6.8E-18 95.5 3.7 50 69-118 51-102 (165)
46 2vje_A E3 ubiquitin-protein li 99.4 3.2E-13 1.1E-17 80.6 4.0 57 69-127 5-64 (64)
47 3hcs_A TNF receptor-associated 99.4 2.9E-13 1E-17 95.0 4.3 59 65-123 11-70 (170)
48 3knv_A TNF receptor-associated 99.4 1.6E-13 5.3E-18 94.1 2.6 51 67-117 26-77 (141)
49 1jm7_B BARD1, BRCA1-associated 99.4 5.9E-14 2E-18 93.1 0.5 53 70-124 20-73 (117)
50 1v87_A Deltex protein 2; ring- 99.3 6.3E-13 2.1E-17 87.5 4.5 48 71-118 24-94 (114)
51 2ecl_A Ring-box protein 2; RNF 99.3 4.1E-13 1.4E-17 83.7 3.3 50 71-120 14-78 (81)
52 2f42_A STIP1 homology and U-bo 99.3 7.9E-13 2.7E-17 93.9 4.9 58 68-125 102-160 (179)
53 4ic3_A E3 ubiquitin-protein li 99.3 5.5E-13 1.9E-17 81.8 2.3 51 70-126 22-73 (74)
54 1bor_A Transcription factor PM 99.3 3.5E-13 1.2E-17 78.3 1.0 46 70-118 4-49 (56)
55 1e4u_A Transcriptional repress 99.3 2.5E-12 8.4E-17 79.8 4.7 54 69-122 8-66 (78)
56 2vje_B MDM4 protein; proto-onc 99.3 2.3E-12 7.9E-17 76.6 3.3 55 70-126 5-62 (63)
57 2bay_A PRE-mRNA splicing facto 99.3 3E-12 1E-16 75.8 3.2 56 72-127 3-59 (61)
58 3dpl_R Ring-box protein 1; ubi 99.2 5E-12 1.7E-16 82.7 4.1 48 71-118 36-101 (106)
59 2y1n_A E3 ubiquitin-protein li 99.2 5.7E-12 2E-16 98.8 3.6 51 71-121 331-382 (389)
60 2ecg_A Baculoviral IAP repeat- 99.2 4.5E-12 1.5E-16 77.7 1.9 51 70-126 23-74 (75)
61 3htk_C E3 SUMO-protein ligase 99.2 1.2E-11 4.1E-16 92.2 3.8 57 68-124 177-238 (267)
62 2ea5_A Cell growth regulator w 99.2 4.5E-11 1.5E-15 72.1 4.9 53 69-127 12-65 (68)
63 2yho_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 76.6 1.7 52 71-128 17-69 (79)
64 4a0k_B E3 ubiquitin-protein li 99.0 2.6E-11 8.9E-16 80.5 0.4 47 72-118 48-112 (117)
65 2d8s_A Cellular modulator of i 98.9 5.9E-10 2E-14 69.3 3.6 49 70-118 13-70 (80)
66 3t6p_A Baculoviral IAP repeat- 98.9 2.2E-10 7.5E-15 88.8 1.4 50 71-126 294-344 (345)
67 2ct0_A Non-SMC element 1 homol 98.9 4.7E-09 1.6E-13 64.2 5.8 48 70-117 13-63 (74)
68 1wim_A KIAA0161 protein; ring 98.8 4.5E-10 1.5E-14 71.5 0.4 52 71-122 4-70 (94)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.4 3.4E-07 1.2E-11 53.6 3.7 49 70-118 4-59 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.3 1.3E-07 4.5E-12 73.0 0.8 49 70-118 306-373 (381)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.2E-06 4E-11 56.1 3.5 45 74-118 3-49 (101)
72 3nw0_A Non-structural maintena 97.5 7.2E-05 2.4E-09 55.0 4.0 47 72-118 180-229 (238)
73 3m62_A Ubiquitin conjugation f 97.0 0.00067 2.3E-08 58.5 4.9 58 68-125 887-945 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.0005 1.7E-08 43.5 2.1 32 71-102 2-36 (101)
75 2ko5_A Ring finger protein Z; 94.9 0.012 4.2E-07 36.9 2.0 50 69-119 25-74 (99)
76 2cs3_A Protein C14ORF4, MY039 94.9 0.04 1.4E-06 33.6 4.2 36 69-104 12-51 (93)
77 3i2d_A E3 SUMO-protein ligase 89.8 0.35 1.2E-05 37.6 4.2 53 70-122 247-304 (371)
78 4fo9_A E3 SUMO-protein ligase 89.1 0.43 1.5E-05 36.9 4.3 53 70-122 213-270 (360)
79 1wil_A KIAA1045 protein; ring 86.5 1.8 6.3E-05 26.5 5.1 34 68-102 11-47 (89)
80 2lri_C Autoimmune regulator; Z 84.3 0.88 3E-05 26.4 2.9 44 71-116 11-60 (66)
81 1m3v_A FLIN4, fusion of the LI 84.2 0.55 1.9E-05 30.2 2.2 51 71-121 31-84 (122)
82 1vfy_A Phosphatidylinositol-3- 74.0 1.4 4.8E-05 25.9 1.5 29 72-100 11-43 (73)
83 2xjy_A Rhombotin-2; oncoprotei 72.6 2.8 9.5E-05 26.9 2.9 49 71-119 28-79 (131)
84 1wd2_A Ariadne-1 protein homol 72.6 0.25 8.5E-06 28.3 -2.1 34 73-106 7-48 (60)
85 2yw8_A RUN and FYVE domain-con 72.1 1.4 4.8E-05 26.5 1.2 32 70-101 17-52 (82)
86 1z2q_A LM5-1; membrane protein 72.1 1.4 4.8E-05 26.6 1.2 32 70-101 19-54 (84)
87 1joc_A EEA1, early endosomal a 71.6 1.1 3.9E-05 29.2 0.8 31 71-101 68-102 (125)
88 1rut_X Flinc4, fusion protein 71.4 1.6 5.4E-05 30.2 1.5 49 71-119 31-82 (188)
89 2o35_A Hypothetical protein DU 71.3 1.7 6E-05 27.4 1.5 12 93-104 42-53 (105)
90 3fyb_A Protein of unknown func 71.1 1.8 6.1E-05 27.3 1.5 12 93-104 41-52 (104)
91 3mjh_B Early endosome antigen 71.0 0.88 3E-05 23.0 0.1 15 71-85 4-18 (34)
92 1x4u_A Zinc finger, FYVE domai 70.3 1.5 5.1E-05 26.5 1.0 31 70-100 12-46 (84)
93 2k16_A Transcription initiatio 68.0 1.5 5.3E-05 25.7 0.7 50 69-118 15-71 (75)
94 1z60_A TFIIH basal transcripti 66.1 3.1 0.00011 23.6 1.7 39 74-112 17-58 (59)
95 3t7l_A Zinc finger FYVE domain 65.9 1.9 6.5E-05 26.4 0.9 32 71-102 19-54 (90)
96 1dvp_A HRS, hepatocyte growth 64.7 1.9 6.5E-05 30.6 0.8 33 69-101 158-194 (220)
97 2rgt_A Fusion of LIM/homeobox 64.4 11 0.00036 25.3 4.6 48 71-120 32-79 (169)
98 2xqn_T Testin, TESS; metal-bin 63.5 8.1 0.00028 24.4 3.6 47 71-119 29-76 (126)
99 2l5u_A Chromodomain-helicase-D 63.4 2.9 0.0001 23.6 1.3 44 69-114 8-57 (61)
100 2fiy_A Protein FDHE homolog; F 62.7 1.3 4.5E-05 33.5 -0.4 46 70-115 180-231 (309)
101 1y02_A CARP2, FYVE-ring finger 62.6 2.8 9.6E-05 27.2 1.2 44 69-112 16-63 (120)
102 3zyq_A Hepatocyte growth facto 61.7 2.9 0.0001 29.9 1.3 33 69-101 161-197 (226)
103 1mm2_A MI2-beta; PHD, zinc fin 60.0 2 6.9E-05 24.3 0.1 48 69-116 6-57 (61)
104 2jmo_A Parkin; IBR, E3 ligase, 59.6 0.65 2.2E-05 27.9 -2.1 16 89-104 55-70 (80)
105 1weo_A Cellulose synthase, cat 59.0 13 0.00044 22.9 3.7 45 73-117 17-69 (93)
106 1wfk_A Zinc finger, FYVE domai 57.5 2.9 0.0001 25.5 0.6 31 71-101 8-42 (88)
107 2l43_A N-teminal domain from h 56.4 4.2 0.00014 24.8 1.2 53 69-121 22-81 (88)
108 2jtn_A LIM domain-binding prot 56.2 9.4 0.00032 25.9 3.1 47 71-119 86-132 (182)
109 2lbm_A Transcriptional regulat 56.1 11 0.00038 25.1 3.3 46 69-114 60-116 (142)
110 3mpx_A FYVE, rhogef and PH dom 55.0 2.5 8.7E-05 32.6 0.0 33 71-103 374-410 (434)
111 2cup_A Skeletal muscle LIM-pro 53.8 12 0.00042 22.5 3.1 47 71-119 32-79 (101)
112 2gmg_A Hypothetical protein PF 53.6 3.4 0.00012 26.2 0.4 32 87-123 70-101 (105)
113 2d8v_A Zinc finger FYVE domain 52.6 7.7 0.00026 22.5 1.8 32 71-103 7-39 (67)
114 2jr6_A UPF0434 protein NMA0874 51.3 3 0.0001 24.3 -0.1 46 69-130 5-50 (68)
115 4g9i_A Hydrogenase maturation 51.1 4.5 0.00015 34.3 0.9 48 70-117 104-189 (772)
116 1x61_A Thyroid receptor intera 50.8 22 0.00074 19.8 3.7 35 71-105 32-67 (72)
117 1f62_A Transcription factor WS 50.6 4.8 0.00016 21.6 0.7 40 75-114 3-49 (51)
118 1fp0_A KAP-1 corepressor; PHD 50.4 7.3 0.00025 23.8 1.6 47 69-115 22-72 (88)
119 3ttc_A HYPF, transcriptional r 50.3 4.6 0.00016 33.7 0.8 46 71-116 16-99 (657)
120 1x64_A Alpha-actinin-2 associa 50.1 29 0.00099 20.4 4.3 25 74-98 27-51 (89)
121 1nyp_A Pinch protein; LIM doma 50.0 15 0.0005 20.2 2.8 36 74-117 7-42 (66)
122 2yt5_A Metal-response element- 49.6 3.5 0.00012 23.4 -0.0 48 70-117 4-63 (66)
123 2dar_A PDZ and LIM domain prot 49.3 11 0.00039 22.3 2.4 28 73-100 52-80 (90)
124 3u5n_A E3 ubiquitin-protein li 48.9 2.3 7.9E-05 29.9 -1.0 44 71-116 6-55 (207)
125 1x62_A C-terminal LIM domain p 48.2 17 0.00058 20.9 3.0 24 74-97 17-40 (79)
126 3ql9_A Transcriptional regulat 47.5 16 0.00055 23.9 3.0 46 69-114 54-110 (129)
127 2lv9_A Histone-lysine N-methyl 47.3 5.1 0.00018 24.8 0.5 44 70-114 26-75 (98)
128 1wyh_A SLIM 2, skeletal muscle 47.2 18 0.00061 20.2 2.9 28 73-100 34-62 (72)
129 2pv0_B DNA (cytosine-5)-methyl 46.9 17 0.00058 28.3 3.5 45 71-115 92-148 (386)
130 3o36_A Transcription intermedi 46.7 3.4 0.00012 28.4 -0.4 45 72-116 4-52 (184)
131 3vth_A Hydrogenase maturation 44.7 5.5 0.00019 33.8 0.4 47 71-117 110-194 (761)
132 2d8z_A Four and A half LIM dom 44.2 21 0.00072 19.8 2.9 31 72-102 31-62 (70)
133 1wg2_A Zinc finger (AN1-like) 43.1 24 0.00083 20.2 2.9 27 71-97 14-41 (64)
134 2puy_A PHD finger protein 21A; 43.1 1.4 4.7E-05 24.8 -2.5 43 72-116 5-53 (60)
135 1v6g_A Actin binding LIM prote 42.7 14 0.00049 21.3 2.0 38 74-119 17-54 (81)
136 1xwh_A Autoimmune regulator; P 42.1 2.6 8.8E-05 24.2 -1.4 47 70-116 6-56 (66)
137 2yql_A PHD finger protein 21A; 41.7 2.4 8E-05 23.5 -1.6 42 70-113 7-54 (56)
138 1zbd_B Rabphilin-3A; G protein 41.7 6.7 0.00023 25.9 0.4 46 70-115 53-107 (134)
139 1x63_A Skeletal muscle LIM-pro 41.4 28 0.00096 19.9 3.2 10 74-83 17-26 (82)
140 1wen_A Inhibitor of growth fam 41.3 31 0.0011 19.9 3.3 45 70-117 14-67 (71)
141 2d8x_A Protein pinch; LIM doma 41.2 14 0.00049 20.6 1.8 32 72-103 31-63 (70)
142 2ku3_A Bromodomain-containing 40.5 27 0.00093 20.1 3.0 47 68-114 12-65 (71)
143 1wff_A Riken cDNA 2810002D23 p 40.3 21 0.00073 21.7 2.5 27 71-97 24-52 (85)
144 2ro1_A Transcription intermedi 38.7 5.4 0.00018 27.7 -0.4 44 73-116 3-50 (189)
145 2k5c_A Uncharacterized protein 37.7 3.8 0.00013 24.9 -1.2 22 106-127 8-29 (95)
146 2zet_C Melanophilin; complex, 37.5 12 0.00042 25.2 1.2 29 71-99 67-100 (153)
147 2ysm_A Myeloid/lymphoid or mix 37.0 7.3 0.00025 24.4 0.0 35 70-104 5-42 (111)
148 1x4l_A Skeletal muscle LIM-pro 36.4 28 0.00096 19.4 2.6 27 73-99 36-63 (72)
149 2ct7_A Ring finger protein 31; 36.4 1.9 6.6E-05 26.1 -2.7 28 75-102 28-61 (86)
150 3v43_A Histone acetyltransfera 36.2 51 0.0018 20.5 4.0 12 89-100 31-42 (112)
151 1wfh_A Zinc finger (AN1-like) 36.1 42 0.0014 19.2 3.2 29 69-97 12-41 (64)
152 2cuq_A Four and A half LIM dom 36.0 27 0.00092 19.9 2.5 30 72-101 41-71 (80)
153 2hf1_A Tetraacyldisaccharide-1 35.7 2.9 9.9E-05 24.4 -1.9 46 69-130 5-50 (68)
154 1wig_A KIAA1808 protein; LIM d 35.2 30 0.001 19.6 2.6 32 71-102 30-63 (73)
155 2js4_A UPF0434 protein BB2007; 34.8 4.8 0.00016 23.6 -1.0 46 69-130 5-50 (70)
156 2cor_A Pinch protein; LIM doma 34.7 34 0.0012 19.6 2.8 27 73-99 42-68 (79)
157 1b8t_A Protein (CRP1); LIM dom 34.7 42 0.0014 22.8 3.7 35 71-105 33-68 (192)
158 1x4k_A Skeletal muscle LIM-pro 34.6 27 0.00094 19.3 2.3 28 73-100 34-62 (72)
159 1x68_A FHL5 protein; four-and- 34.1 27 0.00092 19.8 2.3 9 75-83 8-16 (76)
160 2cu8_A Cysteine-rich protein 2 33.9 24 0.00083 19.9 2.0 9 75-83 12-20 (76)
161 2jny_A Uncharacterized BCR; st 33.8 5.5 0.00019 23.1 -0.9 46 69-130 7-52 (67)
162 1x4w_A Hypothetical protein FL 33.5 19 0.00064 20.9 1.4 28 70-97 13-44 (67)
163 3a1b_A DNA (cytosine-5)-methyl 32.6 22 0.00075 24.2 1.9 44 70-114 77-133 (159)
164 1weu_A Inhibitor of growth fam 31.7 31 0.0011 21.0 2.3 44 70-117 34-87 (91)
165 2e6r_A Jumonji/ARID domain-con 31.7 3.9 0.00013 25.1 -1.9 46 70-115 14-66 (92)
166 2cur_A Skeletal muscle LIM-pro 30.7 51 0.0018 18.0 3.1 34 71-104 30-64 (69)
167 1wfp_A Zinc finger (AN1-like) 30.6 57 0.002 19.2 3.2 28 70-97 23-51 (74)
168 2jne_A Hypothetical protein YF 30.4 2.2 7.5E-05 26.8 -3.2 40 73-117 33-72 (101)
169 2l4z_A DNA endonuclease RBBP8, 30.3 24 0.00081 22.5 1.7 38 72-117 61-99 (123)
170 2dlo_A Thyroid receptor-intera 29.8 23 0.0008 20.3 1.5 30 72-101 41-72 (81)
171 2lv2_A Insulinoma-associated p 29.6 43 0.0015 19.7 2.7 39 70-119 26-69 (85)
172 2d8y_A Eplin protein; LIM doma 29.3 73 0.0025 18.6 3.8 33 71-103 41-74 (91)
173 2pk7_A Uncharacterized protein 29.2 4 0.00014 23.9 -2.0 46 69-130 5-50 (69)
174 1wfl_A Zinc finger protein 216 28.5 54 0.0018 19.3 2.8 27 71-97 24-51 (74)
175 4gut_A Lysine-specific histone 28.4 27 0.00092 29.5 2.1 32 74-105 15-56 (776)
176 3c5k_A HD6, histone deacetylas 27.4 21 0.00071 22.5 1.0 25 72-96 24-48 (109)
177 1x6a_A LIMK-2, LIM domain kina 27.3 67 0.0023 18.2 3.3 34 71-104 40-76 (81)
178 2ffw_A Midline-1; B-BOX, ring 27.0 44 0.0015 19.4 2.4 31 71-101 29-62 (78)
179 1wev_A Riken cDNA 1110020M19; 27.0 12 0.00041 22.6 -0.2 47 71-117 15-74 (88)
180 3vhs_A ATPase wrnip1; zinc fin 26.6 16 0.00053 17.1 0.2 10 108-117 8-17 (29)
181 2dj7_A Actin-binding LIM prote 26.6 25 0.00085 20.4 1.2 27 73-99 43-69 (80)
182 2ehe_A Four and A half LIM dom 25.6 47 0.0016 18.9 2.3 37 74-118 17-55 (82)
183 2iyb_E Testin, TESS, TES; LIM 25.5 32 0.0011 18.8 1.5 10 108-117 34-43 (65)
184 1wfe_A Riken cDNA 2310008M20 p 25.0 63 0.0022 19.4 2.8 29 69-97 22-53 (86)
185 2l3k_A Rhombotin-2, linker, LI 24.6 51 0.0017 20.6 2.5 34 71-104 35-70 (123)
186 1iml_A CRIP, cysteine rich int 24.5 59 0.002 18.2 2.6 44 71-116 26-71 (76)
187 3asl_A E3 ubiquitin-protein li 24.4 13 0.00044 21.5 -0.4 41 74-114 20-68 (70)
188 3shb_A E3 ubiquitin-protein li 24.4 8.9 0.0003 22.7 -1.1 41 74-114 28-76 (77)
189 2egq_A FHL1 protein; LIM domai 24.2 41 0.0014 18.9 1.8 38 73-118 16-58 (77)
190 3uk3_C Zinc finger protein 217 24.2 47 0.0016 16.7 2.0 36 72-118 4-44 (57)
191 1g47_A Pinch protein; LIM doma 23.8 45 0.0015 18.7 2.0 9 74-82 13-21 (77)
192 1x4v_A Hypothetical protein LO 23.8 72 0.0025 18.0 2.8 27 71-97 11-40 (63)
193 1wem_A Death associated transc 23.6 88 0.003 17.8 3.2 46 70-116 14-71 (76)
194 1x3h_A Leupaxin; paxillin fami 23.3 76 0.0026 17.8 3.0 32 71-102 40-72 (80)
195 2lce_A B-cell lymphoma 6 prote 23.1 65 0.0022 17.4 2.6 38 70-118 15-57 (74)
196 2jvx_A NF-kappa-B essential mo 22.7 21 0.00073 16.9 0.3 11 73-83 4-14 (28)
197 1x6e_A Zinc finger protein 24; 21.9 90 0.0031 16.7 3.0 38 70-118 12-54 (72)
198 2e6s_A E3 ubiquitin-protein li 21.3 13 0.00043 22.0 -0.9 41 74-114 28-76 (77)
199 2kpi_A Uncharacterized protein 20.7 30 0.001 19.0 0.7 46 68-131 6-53 (56)
200 2eps_A POZ-, at HOOK-, and zin 20.7 95 0.0033 15.6 3.8 38 70-118 10-53 (54)
201 3lqh_A Histone-lysine N-methyl 20.5 24 0.00081 24.4 0.2 45 73-117 3-65 (183)
202 1j2o_A FLIN2, fusion of rhombo 20.5 99 0.0034 18.9 3.2 36 71-106 29-67 (114)
203 4gzn_C ZFP-57, zinc finger pro 20.2 43 0.0015 18.2 1.3 37 72-119 4-45 (60)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.66 E-value=3.9e-17 Score=99.11 Aligned_cols=58 Identities=36% Similarity=0.889 Sum_probs=53.4
Q ss_pred CCccceeeccccCccCc-------EEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 69 GEVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
..+...|+||++.+.++ +.++|||.||..|+.+|++....||+||..+..++++++|+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 34577899999999887 88999999999999999999899999999999999999986
No 2
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.64 E-value=8.8e-17 Score=95.49 Aligned_cols=56 Identities=38% Similarity=0.940 Sum_probs=51.9
Q ss_pred ccceeeccccCccCc-------EEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 71 VRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
+.+.|+||++.+.++ +.++|||.||..|+.+|++....||+||..+..++++++|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 356799999999887 78999999999999999999899999999999999999986
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=94.68 Aligned_cols=57 Identities=28% Similarity=0.575 Sum_probs=51.1
Q ss_pred CCCccceeeccccCccCcEEc-CCCCcccHHhHHHHHhcCCCCccccccccccCceee
Q 042225 68 VGEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRI 124 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 124 (135)
...+.+.|+||++.+.+|+.+ +|||.||..||..|++....||+||+.+...++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 456788999999999999987 999999999999999988999999999988776544
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.62 E-value=4.1e-16 Score=96.39 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=51.8
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc-CCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-QGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||+||..+...++.+++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 35678899999999999999999999999999999986 67899999999887777654
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=93.29 Aligned_cols=55 Identities=24% Similarity=0.652 Sum_probs=48.9
Q ss_pred CCCCccceeeccccCccCcEEcCCCCcccHHhHHHHHh-cCCCCccccccccccCc
Q 042225 67 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-LQGRCPTCRTRMSVRSI 121 (135)
Q Consensus 67 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 121 (135)
....+.+.|+||++.+.+|+.++|||.||..|+..|+. ....||+||+.+..+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34567899999999999999999999999999999995 55789999999987765
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=2.5e-15 Score=93.69 Aligned_cols=59 Identities=32% Similarity=0.770 Sum_probs=52.4
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc------CCCCccccccccccCceeecC
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL------QGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
...+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++.+++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 35567889999999999999999999999999999987 568999999999888887743
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.58 E-value=8.4e-16 Score=99.59 Aligned_cols=57 Identities=26% Similarity=0.653 Sum_probs=51.8
Q ss_pred CCccceeeccccCccCcEE-cCCCCcccHHhHHHHHhcC-CCCccccccccccCceeec
Q 042225 69 GEVRFTCGICLDTMKEESS-TKCGHVFCKSCIVDAIRLQ-GRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~-~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 125 (135)
+.+.+.|+||++.+.+|+. ++|||.||..||..|+... ..||+||..+...++..++
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 4567889999999999999 9999999999999999987 6999999999988887764
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=92.08 Aligned_cols=54 Identities=31% Similarity=0.693 Sum_probs=47.9
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHh---cCCCCccccccccccCc
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---LQGRCPTCRTRMSVRSI 121 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 121 (135)
...+.+.|+||++.+.+|+.++|||.||..|+..|++ ....||+||..+..+++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567889999999999999999999999999999997 34689999999987665
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=92.63 Aligned_cols=51 Identities=29% Similarity=0.633 Sum_probs=45.5
Q ss_pred CCCccceeeccccCccCcEEcC-CCCcccHHhHHHHHhcC--CCCccccccccc
Q 042225 68 VGEVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQ--GRCPTCRTRMSV 118 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 118 (135)
...+.+.|+||++.+.+|+.++ |||.||..||..|+... ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4567889999999999999999 99999999999999865 689999997643
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.57 E-value=2.6e-15 Score=94.71 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||++++.+|++++|||+||..||..|+....+||+|+..+...+++++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHH
Confidence 4567899999999999999999999999999999999888999999999988887763
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.57 E-value=5.8e-16 Score=95.71 Aligned_cols=58 Identities=29% Similarity=0.665 Sum_probs=51.3
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc-------CCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-------QGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+...++.+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~ 72 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCH
Confidence 45678899999999999999999999999999999986 56899999999887776654
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-16 Score=93.24 Aligned_cols=54 Identities=33% Similarity=0.639 Sum_probs=48.7
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCce
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIR 122 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 122 (135)
..+.+.|+||++.+.+++.++|||.||..|+..|+.....||+||..+...++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 456788999999999999999999999999999999889999999999876553
No 13
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=2.3e-15 Score=89.95 Aligned_cols=57 Identities=26% Similarity=0.605 Sum_probs=50.0
Q ss_pred ccceeecccc-CccCc----EEcCCCCcccHHhHHHHHhc-CCCCccccccccccCceeecCC
Q 042225 71 VRFTCGICLD-TMKEE----SSTKCGHVFCKSCIVDAIRL-QGRCPTCRTRMSVRSIRRIFFP 127 (135)
Q Consensus 71 ~~~~C~IC~~-~~~~p----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~ 127 (135)
+++.|+||++ .+.++ +.++|||.||..|+.+|+.. ...||+||+.+..+++.+++|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 3577999999 88888 57899999999999999764 4679999999999999998875
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=94.22 Aligned_cols=57 Identities=28% Similarity=0.568 Sum_probs=48.2
Q ss_pred CCCccceeeccccCccCcEEcC-CCCcccHHhHHHHHhcC--CCCccccccc-cccCceee
Q 042225 68 VGEVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQ--GRCPTCRTRM-SVRSIRRI 124 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~-~~~~~~~~ 124 (135)
...+.+.|+||++.+.+|++++ |||+||..||..|+... ..||+||..+ ...++.+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 69 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEEC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcC
Confidence 4567899999999999999999 99999999999999743 5899999997 44455443
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=93.52 Aligned_cols=58 Identities=31% Similarity=0.718 Sum_probs=51.6
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc------CCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL------QGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++.+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 45567889999999999999999999999999999986 67899999999988777664
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=91.97 Aligned_cols=50 Identities=34% Similarity=0.769 Sum_probs=46.1
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
.....+.|+||++.+.+|+.++|||.||..|+..|+.....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567889999999999999999999999999999998889999999986
No 17
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.55 E-value=4.5e-15 Score=96.00 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=52.9
Q ss_pred CCCccceeeccccCccCcEEcCCC-CcccHHhHHHHHhcCCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCG-HVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||+++|.+|++++|| |+||..||..|+.....||+|+..+...++++++
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcH
Confidence 356789999999999999999999 9999999999999888999999999988887763
No 18
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.54 E-value=6.3e-15 Score=95.64 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=53.0
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||++++.+|++++|||+||..||..|+....+||+|+..+...++++++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 4567899999999999999999999999999999999888999999999988887763
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=92.77 Aligned_cols=54 Identities=26% Similarity=0.707 Sum_probs=47.8
Q ss_pred CCCccceeeccccCccC----cEEcCCCCcccHHhHHHHHhcC---CCCccccccccccCc
Q 042225 68 VGEVRFTCGICLDTMKE----ESSTKCGHVFCKSCIVDAIRLQ---GRCPTCRTRMSVRSI 121 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~ 121 (135)
...+.+.|+||++.+.+ ++.++|||.||..|+..|++.. ..||+||..+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 45667889999999998 9999999999999999999875 789999999876544
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.1e-15 Score=89.00 Aligned_cols=51 Identities=39% Similarity=0.922 Sum_probs=45.6
Q ss_pred CCCccceeeccccCccCc-------EEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 68 VGEVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
...+...|+||++.+.++ +.++|||.||..|+..|++....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678899999999887 889999999999999999998999999998864
No 21
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=6.7e-15 Score=94.88 Aligned_cols=56 Identities=23% Similarity=0.653 Sum_probs=50.1
Q ss_pred CCccceeeccccCccCcEEc-CCCCcccHHhHHHHHhcCCCCccccccccccCceee
Q 042225 69 GEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRI 124 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 124 (135)
..+.+.|+||++.+.+|+.+ +|||.||..|+..|+.....||+||..+...++.++
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcC
Confidence 34578899999999999988 899999999999999988899999999987777654
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.52 E-value=4.5e-15 Score=101.27 Aligned_cols=50 Identities=30% Similarity=0.756 Sum_probs=45.7
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
.+++.|+||++.+.+|+.++|||.||..||..|+.....||+||+.+...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35678999999999999999999999999999999999999999998643
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.4e-14 Score=89.39 Aligned_cols=56 Identities=23% Similarity=0.568 Sum_probs=47.8
Q ss_pred CCCccceeeccccCccCc---EEcCCCCcccHHhHHHHHhcCCCCccccccccccCcee
Q 042225 68 VGEVRFTCGICLDTMKEE---SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRR 123 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 123 (135)
.......|+||++.+.++ +.++|||.||..||.+|++....||+||+.+...++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 345677899999999865 56799999999999999998899999999998776654
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=9.9e-15 Score=97.73 Aligned_cols=50 Identities=32% Similarity=0.664 Sum_probs=45.1
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcC-CCCccccccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GRCPTCRTRMSV 118 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 118 (135)
..+.+.|+||++.+.+|+.++|||+||..||..|+... ..||.||..+..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34678899999999999999999999999999999854 489999999976
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=84.42 Aligned_cols=45 Identities=33% Similarity=0.757 Sum_probs=40.5
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHh---cCCCCccc
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---LQGRCPTC 112 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~---~~~~CP~C 112 (135)
...+.+.|+||++.+.+|+.++|||.||..||.+|++ ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567889999999999999999999999999999998 34589988
No 26
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.49 E-value=2e-14 Score=95.53 Aligned_cols=60 Identities=33% Similarity=0.695 Sum_probs=52.1
Q ss_pred CcCCCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCC-CCccccccccccCceee
Q 042225 65 MVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPTCRTRMSVRSIRRI 124 (135)
Q Consensus 65 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 124 (135)
......+.+.|+||++.+.+|+.++|||+||..||..|+.... .||+||..+...++++.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 3345778899999999999999999999999999999998664 89999999988766543
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.9e-15 Score=88.29 Aligned_cols=55 Identities=27% Similarity=0.553 Sum_probs=47.9
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCcee
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRR 123 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 123 (135)
...+...|+||++.+.+ +.++|||.||..|+..|+.....||+||..+...+...
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34567889999999999 99999999999999999998899999999998655433
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.49 E-value=1.5e-14 Score=96.99 Aligned_cols=59 Identities=36% Similarity=0.875 Sum_probs=54.3
Q ss_pred CccceeeccccCccCc-------EEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecCCC
Q 042225 70 EVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQ 128 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 128 (135)
.+.+.|+||++.+.++ +.++|||.||..||.+|++....||+||+.+..+++.++|+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~ 70 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS 70 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCC
Confidence 4567899999999988 8999999999999999999999999999999999999988764
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=2.3e-14 Score=93.79 Aligned_cols=51 Identities=25% Similarity=0.656 Sum_probs=46.9
Q ss_pred CCccceeeccccCccCcEEc-CCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 69 GEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
..+.+.|+||++.+.+|+.+ +|||+||..||..|+.....||.||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 45688899999999999997 9999999999999999889999999998764
No 30
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.8e-14 Score=84.33 Aligned_cols=50 Identities=24% Similarity=0.670 Sum_probs=43.3
Q ss_pred CCccceeeccccCcc---CcEEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 69 GEVRFTCGICLDTMK---EESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~---~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
......|+||++.+. .++.++|||.||..|+..|++....||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 455678999999885 35778999999999999999988899999998864
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=2.7e-14 Score=93.65 Aligned_cols=56 Identities=36% Similarity=0.879 Sum_probs=49.0
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHhcC---CCCccccccccccCceeec
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~ 125 (135)
.+.+.|+||++.+.+|+.++|||.||..|+..|+... ..||+||..+...++..++
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 3467899999999999999999999999999999865 3899999999987776653
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.46 E-value=2.2e-14 Score=96.23 Aligned_cols=58 Identities=38% Similarity=0.935 Sum_probs=53.4
Q ss_pred CCccceeeccccCccCc-------EEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 69 GEVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
..+...|+||++.+.++ +.++|||.||..|+.+|++..++||+||..+..++++++|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 34677899999999876 88999999999999999999999999999999999999986
No 33
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=87.58 Aligned_cols=50 Identities=26% Similarity=0.613 Sum_probs=44.4
Q ss_pred CCccceeeccccCccC---cEEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 69 GEVRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
..+...|+||++.+.+ .+.++|||.||..||..|++....||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567889999998887 6788999999999999999988999999998763
No 34
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.45 E-value=9.8e-14 Score=83.33 Aligned_cols=47 Identities=34% Similarity=0.735 Sum_probs=42.9
Q ss_pred ccceeeccccCccCc-EEcCCCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 71 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
....|+||++.+.++ +.++|||.||..|+..|++....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456799999999986 78899999999999999998899999999886
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=5.6e-14 Score=81.03 Aligned_cols=48 Identities=25% Similarity=0.670 Sum_probs=42.3
Q ss_pred CccceeeccccCccC---cEEcC-CCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 70 EVRFTCGICLDTMKE---ESSTK-CGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~---p~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
++...|+||++.+.+ ++.++ |||.||..|+.+|++....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456779999999987 67776 9999999999999999899999998764
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.44 E-value=6.4e-14 Score=80.69 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=41.9
Q ss_pred ccceeeccccCccC----cEEcCCCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 71 VRFTCGICLDTMKE----ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 71 ~~~~C~IC~~~~~~----p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
....|+||++.+.+ ++.++|||.||..|+.+|++....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45679999999865 678899999999999999998899999998775
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.44 E-value=5e-14 Score=97.55 Aligned_cols=51 Identities=29% Similarity=0.688 Sum_probs=46.2
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCC-CCcccccccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPTCRTRMSVR 119 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 119 (135)
..+.+.|+||++.+.+|+.++|||+||..||..|+.... .||+||..+...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346789999999999999999999999999999998654 899999999866
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.1e-14 Score=80.83 Aligned_cols=45 Identities=38% Similarity=0.847 Sum_probs=39.6
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHh---cCCCCccc
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---LQGRCPTC 112 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~---~~~~CP~C 112 (135)
...+.+.|+||++.+.+|+.++|||.||..||..|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4556788999999999999999999999999999955 45689987
No 39
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7.7e-14 Score=85.51 Aligned_cols=50 Identities=20% Similarity=0.561 Sum_probs=44.2
Q ss_pred CCccceeeccccCccCc---EEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 69 GEVRFTCGICLDTMKEE---SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
..+...|+||++.+.++ +.++|||.||..|+..|++....||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34567899999999876 678999999999999999988999999998864
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.42 E-value=7.2e-14 Score=92.42 Aligned_cols=55 Identities=25% Similarity=0.695 Sum_probs=48.8
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc-CCCCccccccccccCcee
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-QGRCPTCRTRMSVRSIRR 123 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 123 (135)
..+.+.|+||++.+.+|+.++|||.||..||..|+.. ...||+||..+...++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 3457889999999999999999999999999999986 678999999998776643
No 41
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.8e-14 Score=84.72 Aligned_cols=51 Identities=22% Similarity=0.628 Sum_probs=43.7
Q ss_pred CCCccceeeccccCccCc---EEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 68 VGEVRFTCGICLDTMKEE---SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
.......|+||++.+.++ +.++|||.||..||.+|++....||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345677899999999865 345999999999999999988899999998864
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.41 E-value=3.1e-14 Score=94.08 Aligned_cols=51 Identities=31% Similarity=0.772 Sum_probs=45.7
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc-CCCCccccccccc
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-QGRCPTCRTRMSV 118 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 118 (135)
...+++.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45568999999999999999999999999999999976 5689999998863
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=88.05 Aligned_cols=56 Identities=30% Similarity=0.628 Sum_probs=48.1
Q ss_pred CCccceeeccccCccCcEEcC-CCCcccHHhHHHHHhcC------CCCcc--cccc-ccccCceee
Q 042225 69 GEVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQ------GRCPT--CRTR-MSVRSIRRI 124 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~~ 124 (135)
..+.+.|+||+++|.+|++++ |||+||..||..|+... ..||+ |+.. +...+|+++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 346788999999999999996 99999999999999853 48999 8877 777777765
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=2.5e-13 Score=101.24 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=51.0
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcC-CCCccccccccccCceee
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GRCPTCRTRMSVRSIRRI 124 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 124 (135)
...+.+.|+||++.+.+|++++|||+||..||..|+... ..||+|+.++...+++++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 456789999999999999999999999999999999864 459999999998888765
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.38 E-value=2e-13 Score=95.52 Aligned_cols=50 Identities=40% Similarity=0.922 Sum_probs=45.1
Q ss_pred CCccceeeccccCccCcEEc-CCCCcccHHhHHHHHhc-CCCCccccccccc
Q 042225 69 GEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRL-QGRCPTCRTRMSV 118 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 118 (135)
..+.+.|+||++.+.+|+.+ +|||.||..||..|+.. ...||+||..+..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45678999999999999987 99999999999999997 6789999999854
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.38 E-value=3.2e-13 Score=80.63 Aligned_cols=57 Identities=28% Similarity=0.563 Sum_probs=49.8
Q ss_pred CCccceeeccccCccCcEEc--CCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecCC
Q 042225 69 GEVRFTCGICLDTMKEESST--KCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFP 127 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~--~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 127 (135)
..++..|+||++...+++.+ +|||. ||..|+..|.+....||+||..+. .++++|++
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~~ 64 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTYFP 64 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEECC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeeecC
Confidence 34566799999999999877 99999 899999999998889999999986 48888864
No 47
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=95.02 Aligned_cols=59 Identities=32% Similarity=0.683 Sum_probs=51.7
Q ss_pred CcCCCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcC-CCCccccccccccCcee
Q 042225 65 MVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GRCPTCRTRMSVRSIRR 123 (135)
Q Consensus 65 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~ 123 (135)
+...+.+.+.|+||++.+.+|++++|||+||..|+..|+... ..||.||..+...++++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 344677899999999999999999999999999999999864 48999999998876654
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.37 E-value=1.6e-13 Score=94.14 Aligned_cols=51 Identities=20% Similarity=0.632 Sum_probs=45.7
Q ss_pred CCCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCC-CCcccccccc
Q 042225 67 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-RCPTCRTRMS 117 (135)
Q Consensus 67 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 117 (135)
....+.+.|+||++.+.+|++++|||+||..||..|+.... .||+||..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678899999999999999999999999999999998664 8999999764
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=5.9e-14 Score=93.13 Aligned_cols=53 Identities=28% Similarity=0.748 Sum_probs=46.7
Q ss_pred CccceeeccccCccCcEEc-CCCCcccHHhHHHHHhcCCCCccccccccccCceee
Q 042225 70 EVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRI 124 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 124 (135)
.+.+.|+||++.+.+|+.+ +|||+||..||..|+. ..||+||..+...++.++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 4578899999999999999 9999999999999987 789999999976666543
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=6.3e-13 Score=87.48 Aligned_cols=48 Identities=29% Similarity=0.604 Sum_probs=40.5
Q ss_pred ccceeeccccCccCcE------------------EcCCCCcccHHhHHHHHh-----cCCCCccccccccc
Q 042225 71 VRFTCGICLDTMKEES------------------STKCGHVFCKSCIVDAIR-----LQGRCPTCRTRMSV 118 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~------------------~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 118 (135)
.+..|+||++.|.++. .++|||.||..||..|+. ....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3468999999987653 789999999999999994 45689999998864
No 51
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=83.68 Aligned_cols=50 Identities=26% Similarity=0.568 Sum_probs=41.6
Q ss_pred ccceeeccccCccC--------------cEEc-CCCCcccHHhHHHHHhcCCCCccccccccccC
Q 042225 71 VRFTCGICLDTMKE--------------ESST-KCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRS 120 (135)
Q Consensus 71 ~~~~C~IC~~~~~~--------------p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 120 (135)
++..|+||++.+.+ .+.+ +|||.||..||.+|++...+||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 45569999998865 3444 59999999999999999999999999987554
No 52
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.34 E-value=7.9e-13 Score=93.87 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcC-CCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|+||++++.+|++++|||+||..||..|+... .+||+|+.++...++++++
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 456899999999999999999999999999999999864 4699999999988888763
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.31 E-value=5.5e-13 Score=81.76 Aligned_cols=51 Identities=29% Similarity=0.718 Sum_probs=44.5
Q ss_pred CccceeeccccCccCcEEcCCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
.+...|+||++.+.+++.++|||. ||..|+..| ..||+||+.+.. ...+|+
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~~ 73 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF--KQKILM 73 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE--EEECBC
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC--cEEEee
Confidence 356789999999999999999999 999999887 789999998875 566665
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=3.5e-13 Score=78.32 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=40.7
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
.+.+.|+||++.+.+|+.++|||+||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 457789999999999999999999999999773 5689999998864
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.30 E-value=2.5e-12 Score=79.75 Aligned_cols=54 Identities=22% Similarity=0.559 Sum_probs=43.6
Q ss_pred CCccceeeccccCcc--CcEEcC--CCCcccHHhHHHHHhc-CCCCccccccccccCce
Q 042225 69 GEVRFTCGICLDTMK--EESSTK--CGHVFCKSCIVDAIRL-QGRCPTCRTRMSVRSIR 122 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~--~p~~~~--CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 122 (135)
..+++.|+||++.+. ++..++ |||.||..|+..++.. ...||.||+.+....+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 456788999999884 345554 9999999999998753 46899999999877664
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.27 E-value=2.3e-12 Score=76.63 Aligned_cols=55 Identities=18% Similarity=0.596 Sum_probs=47.5
Q ss_pred CccceeeccccCccCcEEc--CCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 70 EVRFTCGICLDTMKEESST--KCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~--~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
.....|.||++...+++.+ +|||. ||..|+..|.+....||+||+.+. +++++|+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEEec
Confidence 3456799999999999877 99998 999999999988889999999985 4777764
No 57
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.25 E-value=3e-12 Score=75.80 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=51.4
Q ss_pred cceeeccccCccCcEEc-CCCCcccHHhHHHHHhcCCCCccccccccccCceeecCC
Q 042225 72 RFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFP 127 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 127 (135)
.+.|+|+++.+.+|+.+ ++||+|++.||.+|++...+||+.+.++..++++++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 46799999999999999 999999999999999977789999999999999998754
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24 E-value=5e-12 Score=82.72 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=41.2
Q ss_pred ccceeeccccCccCc------------------EEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 71 VRFTCGICLDTMKEE------------------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
++..|+||++.+.++ +.++|||.||..||..|+....+||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 345699999988854 457999999999999999999999999998753
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.21 E-value=5.7e-12 Score=98.76 Aligned_cols=51 Identities=27% Similarity=0.617 Sum_probs=45.7
Q ss_pred ccceeeccccCccCcEEcCCCCcccHHhHHHHHh-cCCCCccccccccccCc
Q 042225 71 VRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-LQGRCPTCRTRMSVRSI 121 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 121 (135)
....|+||++.+.+++.++|||.||..|+..|+. ....||+||..+....+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 3468999999999999999999999999999998 67899999999986544
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4.5e-12 Score=77.74 Aligned_cols=51 Identities=31% Similarity=0.740 Sum_probs=42.7
Q ss_pred CccceeeccccCccCcEEcCCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
.+...|+||++.+.+++.++|||. ||..|+.. ...||+||..+.. .+.+|+
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~--~~~i~~ 74 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF--KQKIFM 74 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC--CCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC--cEEEec
Confidence 346679999999999999999999 99999964 4789999998865 455554
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.2e-11 Score=92.18 Aligned_cols=57 Identities=28% Similarity=0.532 Sum_probs=50.2
Q ss_pred CCCccceeeccccCccCcEEc-CCCCcccHHhHHHHHhcC--CCCcc--ccccccccCceee
Q 042225 68 VGEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQ--GRCPT--CRTRMSVRSIRRI 124 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~~~ 124 (135)
.....+.||||+++|.+||+. .|||+||+.||..|+... ..||+ |++.+...++.+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 456789999999999999985 999999999999999854 47999 9999998888765
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.5e-11 Score=72.10 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=44.8
Q ss_pred CCccceeeccccCccCcEEcCCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecCC
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFP 127 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 127 (135)
..+...|.||++...+++.++|||. ||..|+.. ...||+||..+.. ++.+|.+
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc--eEEeecC
Confidence 4457789999999999999999999 99999984 5789999998875 6666654
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.12 E-value=1.3e-11 Score=76.62 Aligned_cols=52 Identities=27% Similarity=0.820 Sum_probs=45.3
Q ss_pred ccceeeccccCccCcEEcCCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecCCC
Q 042225 71 VRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQ 128 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 128 (135)
+...|+||++.+.+++.++|||. ||..|+..| ..||+||..+.. .+.+|++.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~~p~ 69 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH--VQHVYLPT 69 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE--EEECBCTT
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC--eEEEEeCc
Confidence 45679999999999999999999 999999865 489999999876 67788765
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.04 E-value=2.6e-11 Score=80.55 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=0.4
Q ss_pred cceeeccccCccCc------------------EEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 72 RFTCGICLDTMKEE------------------SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 72 ~~~C~IC~~~~~~p------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
+..|+||++.+.++ +.++|+|.||..||.+|++....||+||+.+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 45799999998763 125899999999999999999999999998754
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.9e-10 Score=69.26 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=40.8
Q ss_pred CccceeeccccCcc--CcEEcCCC-----CcccHHhHHHHHhcC--CCCccccccccc
Q 042225 70 EVRFTCGICLDTMK--EESSTKCG-----HVFCKSCIVDAIRLQ--GRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 118 (135)
.+...|.||++.+. ++..++|+ |.||..||.+|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567999998774 56788996 999999999999865 589999998864
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.92 E-value=2.2e-10 Score=88.82 Aligned_cols=50 Identities=30% Similarity=0.734 Sum_probs=43.2
Q ss_pred ccceeeccccCccCcEEcCCCCc-ccHHhHHHHHhcCCCCccccccccccCceeecC
Q 042225 71 VRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFF 126 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 126 (135)
+...|+||++.+.+++.++|||. ||..|+..| ..||+||..+.. ...+|+
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~--~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG--TVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE--EEECC-
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC--eEEeec
Confidence 46789999999999999999999 999999877 689999999874 556654
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=4.7e-09 Score=64.20 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=40.3
Q ss_pred CccceeeccccCccCcEEc-CCCCcccHHhHHHHHhcC--CCCcccccccc
Q 042225 70 EVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQ--GRCPTCRTRMS 117 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 117 (135)
+....|+||.+.+.....- .|+|.|+..||.+|++.. ..||+|+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456799999998865443 899999999999999977 78999998775
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=4.5e-10 Score=71.46 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=41.1
Q ss_pred ccceeeccccCccCcEEc---CCCCcccHHhHHHHHhc--------CCCCcc--cccc--ccccCce
Q 042225 71 VRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIRL--------QGRCPT--CRTR--MSVRSIR 122 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~--~~~~~~~ 122 (135)
+.+.|+||++.+..+..+ +|||.||..|+..++.. ...||. |+.. +....+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 467799999999877443 79999999999999873 136999 9998 6655444
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.36 E-value=3.4e-07 Score=53.57 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=39.1
Q ss_pred CccceeeccccCccCcEEcCCC--C---cccHHhHHHHHhc--CCCCccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCG--H---VFCKSCIVDAIRL--QGRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~Cg--H---~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 118 (135)
++...|.||++...++..+||. + .||..|+.+|+.. ...||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4556799999877667677865 4 7999999999984 5689999988753
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.28 E-value=1.3e-07 Score=72.96 Aligned_cols=49 Identities=22% Similarity=0.615 Sum_probs=38.8
Q ss_pred CccceeeccccCccC----cE----EcCCCCcccHHhHHHHHhcC-----------CCCccccccccc
Q 042225 70 EVRFTCGICLDTMKE----ES----STKCGHVFCKSCIVDAIRLQ-----------GRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~----p~----~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 118 (135)
+....|+||+..+.+ |. ...|||.||..|+.+|++.. ..||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456779999998876 21 23799999999999999732 369999998863
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.19 E-value=1.2e-06 Score=56.07 Aligned_cols=45 Identities=27% Similarity=0.580 Sum_probs=37.4
Q ss_pred eeeccccCccC-cEEcCCCCcccHHhHHHHHh-cCCCCccccccccc
Q 042225 74 TCGICLDTMKE-ESSTKCGHVFCKSCIVDAIR-LQGRCPTCRTRMSV 118 (135)
Q Consensus 74 ~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 118 (135)
.|++|.-.+.. ...+||.|.||.+|+..|.+ ..+.||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48888887775 45779999999999999986 45889999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.52 E-value=7.2e-05 Score=55.04 Aligned_cols=47 Identities=23% Similarity=0.571 Sum_probs=39.1
Q ss_pred cceeeccccCccCcEEc-CCCCcccHHhHHHHHhcCC--CCccccccccc
Q 042225 72 RFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQG--RCPTCRTRMSV 118 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 118 (135)
...|.+|.+.......- .|+|.||..|+..|++... .||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 56799999988876655 4999999999999998654 89999887654
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.00 E-value=0.00067 Score=58.46 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=52.7
Q ss_pred CCCccceeeccccCccCcEEcCCC-CcccHHhHHHHHhcCCCCccccccccccCceeec
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCG-HVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIF 125 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 125 (135)
...+.+.|||-.+.+.+||.++.| ++|=...|.+|+....+||.-|.++...++++++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccH
Confidence 456799999999999999999998 5899999999999888999999999988888763
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.82 E-value=0.0005 Score=43.49 Aligned_cols=32 Identities=16% Similarity=0.626 Sum_probs=27.0
Q ss_pred ccceeeccccC-ccCcEE--cCCCCcccHHhHHHH
Q 042225 71 VRFTCGICLDT-MKEESS--TKCGHVFCKSCIVDA 102 (135)
Q Consensus 71 ~~~~C~IC~~~-~~~p~~--~~CgH~fc~~Ci~~~ 102 (135)
+++.|.||.+. +.+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35779999975 677777 899999999999983
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.92 E-value=0.012 Score=36.95 Aligned_cols=50 Identities=20% Similarity=0.451 Sum_probs=38.9
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
.-..+.|..|.-.... .+.-..|-.|..|+...+.....||+|.+++..+
T Consensus 25 ~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3346679999876663 3334467789999999999999999999999764
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.89 E-value=0.04 Score=33.64 Aligned_cols=36 Identities=25% Similarity=0.736 Sum_probs=29.7
Q ss_pred CCccceeeccccCccCcEEcCC----CCcccHHhHHHHHh
Q 042225 69 GEVRFTCGICLDTMKEESSTKC----GHVFCKSCIVDAIR 104 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~C----gH~fc~~Ci~~~~~ 104 (135)
....+.|.+|.+.+++.....| +|.||..|-...++
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 3456789999999999855544 88999999999888
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.78 E-value=0.35 Score=37.56 Aligned_cols=53 Identities=21% Similarity=0.514 Sum_probs=38.9
Q ss_pred CccceeeccccCccCcEE-cCCCCcccHHh--HHHHHh--cCCCCccccccccccCce
Q 042225 70 EVRFTCGICLDTMKEESS-TKCGHVFCKSC--IVDAIR--LQGRCPTCRTRMSVRSIR 122 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~-~~CgH~fc~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~ 122 (135)
.-.+.||+-...+..|+. ..|.|..|.+- +..+.. ....||+|.+.+...+|+
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 357889999999999976 57999966543 333332 345799999999877664
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.13 E-value=0.43 Score=36.91 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=38.7
Q ss_pred CccceeeccccCccCcEE-cCCCCcccHH--hHHHHHh--cCCCCccccccccccCce
Q 042225 70 EVRFTCGICLDTMKEESS-TKCGHVFCKS--CIVDAIR--LQGRCPTCRTRMSVRSIR 122 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~-~~CgH~fc~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 122 (135)
.-.+.||+-...+..|+. ..|.|.-|.+ -+..+.. ....||+|.+.+..++|+
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 347789999999999976 5899995543 3333333 345799999999877764
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.50 E-value=1.8 Score=26.48 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCCccceeeccccCccCcEEc---CCCCcccHHhHHHH
Q 042225 68 VGEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDA 102 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~ 102 (135)
.+..+..|.||...-.+ ... -|+-.||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 45567889999854333 233 48899999999986
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.32 E-value=0.88 Score=26.41 Aligned_cols=44 Identities=25% Similarity=0.488 Sum_probs=30.3
Q ss_pred ccceeeccccCccCcEEc--CCCCcccHHhHHHHHhc----CCCCccccccc
Q 042225 71 VRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRL----QGRCPTCRTRM 116 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 116 (135)
....|.||.+.-. +.+ .|...||..|+...+.. ...|+.|....
T Consensus 11 ~~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456999986422 222 69999999999766653 24799997543
No 81
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=84.21 E-value=0.55 Score=30.23 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=39.1
Q ss_pred ccceeeccccCccC---cEEcCCCCcccHHhHHHHHhcCCCCccccccccccCc
Q 042225 71 VRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSI 121 (135)
Q Consensus 71 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 121 (135)
+-+.|..|...+.+ .....=|..||..|..+.+.....|-.|.+.+....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 35789999998863 3455678889999998877665589999998876544
No 82
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=74.04 E-value=1.4 Score=25.87 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=21.4
Q ss_pred cceeeccccCccCc----EEcCCCCcccHHhHH
Q 042225 72 RFTCGICLDTMKEE----SSTKCGHVFCKSCIV 100 (135)
Q Consensus 72 ~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~ 100 (135)
+..|.+|...|.-- .--.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 34799999877632 224799999999964
No 83
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=72.65 E-value=2.8 Score=26.87 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=35.5
Q ss_pred ccceeeccccCccC---cEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 71 VRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 71 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
+-+.|..|...+.+ .....=|..||..|..+.+.....|..|.+.+...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 45778888888752 45556678899999877655444799998888653
No 84
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.55 E-value=0.25 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=23.4
Q ss_pred ceeeccccCccCc-----EEcC---CCCcccHHhHHHHHhcC
Q 042225 73 FTCGICLDTMKEE-----SSTK---CGHVFCKSCIVDAIRLQ 106 (135)
Q Consensus 73 ~~C~IC~~~~~~p-----~~~~---CgH~fc~~Ci~~~~~~~ 106 (135)
-.||-|...++.. ++-. |++.||+.|...|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4588888777643 2333 88999999988876543
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.10 E-value=1.4 Score=26.49 Aligned_cols=32 Identities=25% Similarity=0.771 Sum_probs=22.9
Q ss_pred CccceeeccccCccCc----EEcCCCCcccHHhHHH
Q 042225 70 EVRFTCGICLDTMKEE----SSTKCGHVFCKSCIVD 101 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 101 (135)
.+...|.+|...|.-- .--.||..||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3445699999887632 2247999999999753
No 86
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=72.07 E-value=1.4 Score=26.62 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=23.3
Q ss_pred CccceeeccccCccCc----EEcCCCCcccHHhHHH
Q 042225 70 EVRFTCGICLDTMKEE----SSTKCGHVFCKSCIVD 101 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 101 (135)
.+...|.+|...|.-- .--.||..||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4456799999987632 2247999999999754
No 87
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.60 E-value=1.1 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.641 Sum_probs=22.5
Q ss_pred ccceeeccccCccCc----EEcCCCCcccHHhHHH
Q 042225 71 VRFTCGICLDTMKEE----SSTKCGHVFCKSCIVD 101 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 101 (135)
+...|.+|...|.-- .--.||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 345799999977632 2347999999999643
No 88
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=71.40 E-value=1.6 Score=30.16 Aligned_cols=49 Identities=20% Similarity=0.547 Sum_probs=35.8
Q ss_pred ccceeeccccCccC---cEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 71 VRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 71 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
+-+.|..|...+.. .....=|..||..|..+.+.....|..|.+.+...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 46788888888764 45556678899999877654333699998888653
No 89
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=71.34 E-value=1.7 Score=27.35 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=10.9
Q ss_pred cccHHhHHHHHh
Q 042225 93 VFCKSCIVDAIR 104 (135)
Q Consensus 93 ~fc~~Ci~~~~~ 104 (135)
.||..|+..|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 90
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=71.10 E-value=1.8 Score=27.26 Aligned_cols=12 Identities=25% Similarity=0.877 Sum_probs=10.9
Q ss_pred cccHHhHHHHHh
Q 042225 93 VFCKSCIVDAIR 104 (135)
Q Consensus 93 ~fc~~Ci~~~~~ 104 (135)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 91
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=70.96 E-value=0.88 Score=23.00 Aligned_cols=15 Identities=20% Similarity=0.660 Sum_probs=11.2
Q ss_pred ccceeeccccCccCc
Q 042225 71 VRFTCGICLDTMKEE 85 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p 85 (135)
+.+.||+|+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 457888888877764
No 92
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.31 E-value=1.5 Score=26.48 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=22.2
Q ss_pred CccceeeccccCccCc----EEcCCCCcccHHhHH
Q 042225 70 EVRFTCGICLDTMKEE----SSTKCGHVFCKSCIV 100 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~ 100 (135)
.+...|.+|...|.-- .-..||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3445699999887532 224799999999964
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=68.00 E-value=1.5 Score=25.66 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCccceeeccccCccCcEEc---CCCCcccHHhHHHHHh----cCCCCccccccccc
Q 042225 69 GEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIR----LQGRCPTCRTRMSV 118 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~ 118 (135)
..+...|.+|.........+ .|..-||..|+..-.. ....||.|...+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34566799998865442233 5777899999864333 23469999776643
No 94
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=66.15 E-value=3.1 Score=23.58 Aligned_cols=39 Identities=31% Similarity=0.690 Sum_probs=27.2
Q ss_pred eeeccccCccCcE---EcCCCCcccHHhHHHHHhcCCCCccc
Q 042225 74 TCGICLDTMKEES---STKCGHVFCKSCIVDAIRLQGRCPTC 112 (135)
Q Consensus 74 ~C~IC~~~~~~p~---~~~CgH~fc~~Ci~~~~~~~~~CP~C 112 (135)
.|-.|...+.+.. -..|++.||.+|-.=....-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4888888886543 23799999999964322333578877
No 95
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.93 E-value=1.9 Score=26.41 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=22.7
Q ss_pred ccceeeccccCccCc----EEcCCCCcccHHhHHHH
Q 042225 71 VRFTCGICLDTMKEE----SSTKCGHVFCKSCIVDA 102 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~~ 102 (135)
+...|.+|...|.-- .-..||..||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345699999877521 23479999999997543
No 96
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.74 E-value=1.9 Score=30.64 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=23.8
Q ss_pred CCccceeeccccCccCc----EEcCCCCcccHHhHHH
Q 042225 69 GEVRFTCGICLDTMKEE----SSTKCGHVFCKSCIVD 101 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 101 (135)
+.+...|.+|...|.-- .--.||+.||..|...
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 44557899999877621 2347999999999643
No 97
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=64.43 E-value=11 Score=25.33 Aligned_cols=48 Identities=17% Similarity=0.454 Sum_probs=34.5
Q ss_pred ccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccC
Q 042225 71 VRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRS 120 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 120 (135)
+-+.|..|...+.......=|..||..|..+.+ ...|..|.+.+...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCCCc
Confidence 467888898888765455667889999986543 356888887776543
No 98
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=63.45 E-value=8.1 Score=24.43 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=35.4
Q ss_pred ccceeeccccCccC-cEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 71 VRFTCGICLDTMKE-ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 71 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
+-+.|..|...+.. .....=|..||..|..+. ....|..|.+.+...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 46789999988876 344566888999998653 346799999998853
No 99
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=63.42 E-value=2.9 Score=23.56 Aligned_cols=44 Identities=18% Similarity=0.495 Sum_probs=29.4
Q ss_pred CCccceeeccccCccCcEEc--CCCCcccHHhHHHHHh----cCCCCccccc
Q 042225 69 GEVRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIR----LQGRCPTCRT 114 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 114 (135)
...+..|.+|... ..+.. .|...||..|+..-+. ....||.|.+
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456679999874 22222 6888899999976433 2346999964
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=62.68 E-value=1.3 Score=33.47 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=35.3
Q ss_pred CccceeeccccCccCcEEc----CCC--CcccHHhHHHHHhcCCCCcccccc
Q 042225 70 EVRFTCGICLDTMKEESST----KCG--HVFCKSCIVDAIRLQGRCPTCRTR 115 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~----~Cg--H~fc~~Ci~~~~~~~~~CP~Cr~~ 115 (135)
+..-.||+|.....-.+.. .=| +.+|..|-.+|......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6678999999977655443 234 357999999998888899999765
No 101
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.59 E-value=2.8 Score=27.25 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=25.9
Q ss_pred CCccceeeccccCccCc----EEcCCCCcccHHhHHHHHhcCCCCccc
Q 042225 69 GEVRFTCGICLDTMKEE----SSTKCGHVFCKSCIVDAIRLQGRCPTC 112 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~~~~~~~~CP~C 112 (135)
..+...|..|...|.-- .-..||..||..|.........-|-.|
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 44456799999887632 234799999999976544334446555
No 102
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.71 E-value=2.9 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCccceeeccccCccCc----EEcCCCCcccHHhHHH
Q 042225 69 GEVRFTCGICLDTMKEE----SSTKCGHVFCKSCIVD 101 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 101 (135)
+.+...|.+|...|.-- .-..||..||..|-..
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 44556899999877632 2347999999999753
No 103
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=60.00 E-value=2 Score=24.28 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHh----cCCCCccccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR----LQGRCPTCRTRM 116 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 116 (135)
...+..|.+|.+.-.--.--.|...||..|+..-+. ....||.|....
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 344566999986321101115888899999875333 234699996543
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=59.61 E-value=0.65 Score=27.92 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.8
Q ss_pred CCCCcccHHhHHHHHh
Q 042225 89 KCGHVFCKSCIVDAIR 104 (135)
Q Consensus 89 ~CgH~fc~~Ci~~~~~ 104 (135)
.||+.||..|...|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999988754
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.04 E-value=13 Score=22.94 Aligned_cols=45 Identities=31% Similarity=0.657 Sum_probs=31.4
Q ss_pred ceeeccccCccCc----EEc---CCCCcccHHhHHHHHh-cCCCCcccccccc
Q 042225 73 FTCGICLDTMKEE----SST---KCGHVFCKSCIVDAIR-LQGRCPTCRTRMS 117 (135)
Q Consensus 73 ~~C~IC~~~~~~p----~~~---~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 117 (135)
-.|.||.+..--. +.. .|+-..|..|+.--.+ ....||.|+....
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4599999864311 222 5777789999975555 3468999988775
No 106
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.49 E-value=2.9 Score=25.50 Aligned_cols=31 Identities=23% Similarity=0.573 Sum_probs=21.9
Q ss_pred ccceeeccccCccCc----EEcCCCCcccHHhHHH
Q 042225 71 VRFTCGICLDTMKEE----SSTKCGHVFCKSCIVD 101 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 101 (135)
+...|.+|...|.-- .-..||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 344699999877632 2247999999999754
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=56.40 E-value=4.2 Score=24.77 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCccceeeccccCcc-C--cEEc--CCCCcccHHhHHHHHh--cCCCCccccccccccCc
Q 042225 69 GEVRFTCGICLDTMK-E--ESST--KCGHVFCKSCIVDAIR--LQGRCPTCRTRMSVRSI 121 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~-~--p~~~--~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 121 (135)
..++..|.||...-. + .+.+ .|.-.|+..|+..-.. ....|+.|........+
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 445678999997642 1 2222 6888899999964322 23469999776555444
No 108
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=56.16 E-value=9.4 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.470 Sum_probs=32.7
Q ss_pred ccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 71 VRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
+-+.|..|...+.......=|..||..|..+. ....|..|...+...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccCCC
Confidence 45778888887775444455777899987543 345788888877654
No 109
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=56.15 E-value=11 Score=25.13 Aligned_cols=46 Identities=24% Similarity=0.519 Sum_probs=31.2
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHh-----------cCCCCccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-----------LQGRCPTCRT 114 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~ 114 (135)
...+..|.+|.+--.--.--.|-..||..|+..-+. ....|+.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 445677999987443111226888999999986542 2347999974
No 110
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=54.97 E-value=2.5 Score=32.64 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=0.0
Q ss_pred ccceeeccccCccCc----EEcCCCCcccHHhHHHHH
Q 042225 71 VRFTCGICLDTMKEE----SSTKCGHVFCKSCIVDAI 103 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~~~ 103 (135)
+...|.+|...|.-- ....||+.||..|.....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 456799999877622 234799999999986543
No 111
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=53.79 E-value=12 Score=22.51 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=33.7
Q ss_pred ccceeeccccCccCc-EEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 71 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
+-+.|..|...+... ....=|..||..|..+ .....|..|.+.+...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 457788998888654 3455677899999743 2345799999988743
No 112
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=53.57 E-value=3.4 Score=26.25 Aligned_cols=32 Identities=31% Similarity=0.717 Sum_probs=18.9
Q ss_pred EcCCCCcccHHhHHHHHhcCCCCccccccccccCcee
Q 042225 87 STKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRR 123 (135)
Q Consensus 87 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 123 (135)
...||+.|.. -+.....||.|+..--....+.
T Consensus 70 C~~CG~~F~~-----~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 70 CRKCGFVFKA-----EINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp BTTTCCBCCC-----CSSCCSSCSSSCCCCBCCCCEE
T ss_pred hhhCcCeecc-----cCCCCCCCcCCCCCccCCccee
Confidence 3468888821 2223467999987655444443
No 113
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=52.57 E-value=7.7 Score=22.51 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=23.4
Q ss_pred ccceeeccccCccCcEEcCC-CCcccHHhHHHHH
Q 042225 71 VRFTCGICLDTMKEESSTKC-GHVFCKSCIVDAI 103 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~~C-gH~fc~~Ci~~~~ 103 (135)
+..-|.||.+.-. -.-+.| |-.||..|..+..
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 3445999999733 335678 7789999998764
No 114
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=51.33 E-value=3 Score=24.33 Aligned_cols=46 Identities=2% Similarity=-0.057 Sum_probs=31.7
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecCCCCC
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQLQ 130 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 130 (135)
.-+.+.||+|...+.-. ... ..-.|+.|+..+..++-+++.++.-+
T Consensus 5 LL~iL~CP~ck~~L~~~--~~~--------------~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYH--QDK--------------QELWSRQAKLAYPIKDGIPYMLENEA 50 (68)
T ss_dssp SSCCCBCSSSCCBCEEE--TTT--------------TEEEETTTTEEEEEETTEECCCTTTC
T ss_pred HhhheECCCCCCcCeEe--CCC--------------CEEEcCCCCcEecCCCCeeeeChhhc
Confidence 45677899999866521 011 12358888888888888899887754
No 115
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=51.13 E-value=4.5 Score=34.31 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=35.1
Q ss_pred CccceeeccccCccCc----------EEcCCCCcc--------------------cHHhHHHHHhc--------CCCCcc
Q 042225 70 EVRFTCGICLDTMKEE----------SSTKCGHVF--------------------CKSCIVDAIRL--------QGRCPT 111 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------c~~Ci~~~~~~--------~~~CP~ 111 (135)
.+.-.|+-|+..+.+| ..+.||.+| |..|-.++-.. -..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3456799999888776 235688777 99999999762 136999
Q ss_pred cccccc
Q 042225 112 CRTRMS 117 (135)
Q Consensus 112 Cr~~~~ 117 (135)
|.-.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 976554
No 116
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.83 E-value=22 Score=19.84 Aligned_cols=35 Identities=17% Similarity=0.505 Sum_probs=24.6
Q ss_pred ccceeeccccCccCc-EEcCCCCcccHHhHHHHHhc
Q 042225 71 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRL 105 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~ 105 (135)
+-+.|..|...+... ....=|..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 357788888877643 45566778888888776653
No 117
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=50.58 E-value=4.8 Score=21.55 Aligned_cols=40 Identities=23% Similarity=0.655 Sum_probs=24.4
Q ss_pred eeccccCccC-cEEc--CCCCcccHHhHHHHHhc----CCCCccccc
Q 042225 75 CGICLDTMKE-ESST--KCGHVFCKSCIVDAIRL----QGRCPTCRT 114 (135)
Q Consensus 75 C~IC~~~~~~-p~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~ 114 (135)
|.||...-.. .+.. .|...||..|+..-+.. ...||.|..
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 6777754322 2222 68888999999653332 236888864
No 118
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=50.38 E-value=7.3 Score=23.85 Aligned_cols=47 Identities=17% Similarity=0.436 Sum_probs=30.0
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhc----CCCCcccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL----QGRCPTCRTR 115 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 115 (135)
...+..|.+|...-.--.--.|.-.|+..|+..-+.. ...||.|...
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3455679999975321111268888999999665442 3469999754
No 119
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=50.26 E-value=4.6 Score=33.67 Aligned_cols=46 Identities=30% Similarity=0.663 Sum_probs=31.0
Q ss_pred ccceeeccccCccCc----------EEcCCCCcc--------------------cHHhHHHHHhc--------CCCCccc
Q 042225 71 VRFTCGICLDTMKEE----------SSTKCGHVF--------------------CKSCIVDAIRL--------QGRCPTC 112 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------c~~Ci~~~~~~--------~~~CP~C 112 (135)
+.-.|+-|+..+.+| ..+.||.+| |..|..++-.. -..||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 344577777766654 134566666 99999998762 2369999
Q ss_pred cccc
Q 042225 113 RTRM 116 (135)
Q Consensus 113 r~~~ 116 (135)
.=.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 6655
No 120
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.06 E-value=29 Score=20.37 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=11.4
Q ss_pred eeeccccCccCcEEcCCCCcccHHh
Q 042225 74 TCGICLDTMKEESSTKCGHVFCKSC 98 (135)
Q Consensus 74 ~C~IC~~~~~~p~~~~CgH~fc~~C 98 (135)
.|..|.+.+...+...-+..||..|
T Consensus 27 ~C~~C~~~I~~~~~~a~~~~~H~~C 51 (89)
T 1x64_A 27 LCDKCGSGIVGAVVKARDKYRHPEC 51 (89)
T ss_dssp BCTTTCCBCCSCCEESSSCEECTTT
T ss_pred CcccCCCEecccEEEECCceECccC
Confidence 3555555544433333444444443
No 121
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=50.02 E-value=15 Score=20.25 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=16.6
Q ss_pred eeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 74 ~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
.|+.|...+.......-|..||..| +.|-.|+..+.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 4555555444433333444444433 23555555544
No 122
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=49.56 E-value=3.5 Score=23.38 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=30.7
Q ss_pred CccceeeccccCcc---CcEEc--CCCCcccHHhHHHHH-------hcCCCCcccccccc
Q 042225 70 EVRFTCGICLDTMK---EESST--KCGHVFCKSCIVDAI-------RLQGRCPTCRTRMS 117 (135)
Q Consensus 70 ~~~~~C~IC~~~~~---~p~~~--~CgH~fc~~Ci~~~~-------~~~~~CP~Cr~~~~ 117 (135)
.++..|.+|..... +.+.+ .|...||..|+..-+ .....|+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 34567999997632 22332 688889999986422 23457888865443
No 123
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.34 E-value=11 Score=22.29 Aligned_cols=28 Identities=29% Similarity=0.697 Sum_probs=11.0
Q ss_pred ceeeccccCccC-cEEcCCCCcccHHhHH
Q 042225 73 FTCGICLDTMKE-ESSTKCGHVFCKSCIV 100 (135)
Q Consensus 73 ~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~ 100 (135)
+.|..|...+.. .....=|..||..|..
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYE 80 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHH
Confidence 444444444332 1222334444444443
No 124
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=48.86 E-value=2.3 Score=29.92 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=29.1
Q ss_pred ccceeeccccCccCcEEc--CCCCcccHHhHHHHHh----cCCCCccccccc
Q 042225 71 VRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIR----LQGRCPTCRTRM 116 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 116 (135)
.+..|.+|...-. ..+ .|...||..|+..-+. ....||.|+..-
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3455999986422 222 6888899999865444 234799997654
No 125
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=17 Score=20.89 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=10.0
Q ss_pred eeeccccCccCcEEcCCCCcccHH
Q 042225 74 TCGICLDTMKEESSTKCGHVFCKS 97 (135)
Q Consensus 74 ~C~IC~~~~~~p~~~~CgH~fc~~ 97 (135)
.|..|.+.+...++..-+..||..
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~ 40 (79)
T 1x62_A 17 MCDKCGTGIVGVFVKLRDRHRHPE 40 (79)
T ss_dssp CCSSSCCCCCSSCEECSSCEECTT
T ss_pred ccccCCCCccCcEEEECcceeCcC
Confidence 355555544433333333334333
No 126
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=47.49 E-value=16 Score=23.93 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=29.4
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHH------h-----cCCCCccccc
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAI------R-----LQGRCPTCRT 114 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~------~-----~~~~CP~Cr~ 114 (135)
...+..|.+|.+--.-..--.|-..||..|+.+-+ + ....|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 33455699998743311112688899999998642 1 2257999954
No 127
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=47.34 E-value=5.1 Score=24.81 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=28.7
Q ss_pred CccceeeccccCccCcEEc---CCCCcccHHhHHHHHh---cCCCCccccc
Q 042225 70 EVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIR---LQGRCPTCRT 114 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~ 114 (135)
.+.+.| ||.....+...+ .|..-|+..|+..-.. ....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 445778 898766554444 5777799999854222 2357999964
No 128
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.16 E-value=18 Score=20.18 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=12.3
Q ss_pred ceeeccccCccC-cEEcCCCCcccHHhHH
Q 042225 73 FTCGICLDTMKE-ESSTKCGHVFCKSCIV 100 (135)
Q Consensus 73 ~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~ 100 (135)
+.|..|...+.. .....=|..||..|..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYE 62 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHH
Confidence 445555544443 2222334445555543
No 129
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.88 E-value=17 Score=28.29 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=28.1
Q ss_pred ccceeeccccCccCcEEc--CCCCcccHHhHHHHHh----------cCCCCcccccc
Q 042225 71 VRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIR----------LQGRCPTCRTR 115 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----------~~~~CP~Cr~~ 115 (135)
.+..|.+|-+--.--.-- .|...||..||...+. ....|-+|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 455566666533211111 6889999999998873 22468888644
No 130
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=46.68 E-value=3.4 Score=28.42 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=28.4
Q ss_pred cceeeccccCccCcEEcCCCCcccHHhHHHHHhc----CCCCccccccc
Q 042225 72 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL----QGRCPTCRTRM 116 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 116 (135)
+..|.+|.+.-.--.--.|...||..|+..-+.. ...||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3458899864221111258888999998654442 34699998654
No 131
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=44.66 E-value=5.5 Score=33.76 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=32.7
Q ss_pred ccceeeccccCccCc----------EEcCCCCcc--------------------cHHhHHHHHhc--------CCCCccc
Q 042225 71 VRFTCGICLDTMKEE----------SSTKCGHVF--------------------CKSCIVDAIRL--------QGRCPTC 112 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------c~~Ci~~~~~~--------~~~CP~C 112 (135)
+.-.|+-|+..+.+| ..+.||..| |..|..++-.. -..||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 445688888877765 234677655 99999998762 2369999
Q ss_pred ccccc
Q 042225 113 RTRMS 117 (135)
Q Consensus 113 r~~~~ 117 (135)
.-.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 66553
No 132
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.25 E-value=21 Score=19.77 Aligned_cols=31 Identities=19% Similarity=0.613 Sum_probs=16.8
Q ss_pred cceeeccccCccC-cEEcCCCCcccHHhHHHH
Q 042225 72 RFTCGICLDTMKE-ESSTKCGHVFCKSCIVDA 102 (135)
Q Consensus 72 ~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~ 102 (135)
-+.|..|...+.. .....=|..||..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 4566666665543 233344556666666443
No 133
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.10 E-value=24 Score=20.21 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=20.2
Q ss_pred ccceeeccccCccC-cEEcCCCCcccHH
Q 042225 71 VRFTCGICLDTMKE-ESSTKCGHVFCKS 97 (135)
Q Consensus 71 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 97 (135)
....|..|...+.- +..-.||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 45679999986543 5666899999974
No 134
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=43.07 E-value=1.4 Score=24.81 Aligned_cols=43 Identities=21% Similarity=0.579 Sum_probs=25.7
Q ss_pred cceeeccccCccCcEE--cCCCCcccHHhHHHHHh----cCCCCccccccc
Q 042225 72 RFTCGICLDTMKEESS--TKCGHVFCKSCIVDAIR----LQGRCPTCRTRM 116 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~--~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 116 (135)
+..|.+|...- .+. -.|...|+..|+..-+. ....||.|....
T Consensus 5 ~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCS--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCCC--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45588887642 222 25777888888864333 223588885543
No 135
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.68 E-value=14 Score=21.29 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=22.1
Q ss_pred eeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccccc
Q 042225 74 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVR 119 (135)
Q Consensus 74 ~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 119 (135)
.|..|...+...++..-+..||..| +.|-.|++.+...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred cCccccCEeccceEEECCceeCccC--------CccccCCCCCCCC
Confidence 5777777666544444455555544 3467777776543
No 136
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=42.13 E-value=2.6 Score=24.16 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=28.3
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHh----cCCCCccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR----LQGRCPTCRTRM 116 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 116 (135)
..+..|.||.+.-.--.--.|...||..|+..-+. ....||.|...-
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 34566999987421111126888899999874333 234699886543
No 137
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.73 E-value=2.4 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.549 Sum_probs=25.6
Q ss_pred CccceeeccccCccCcEE--cCCCCcccHHhHHHHHhc----CCCCcccc
Q 042225 70 EVRFTCGICLDTMKEESS--TKCGHVFCKSCIVDAIRL----QGRCPTCR 113 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~--~~CgH~fc~~Ci~~~~~~----~~~CP~Cr 113 (135)
..+..|.+|...- .+. -.|...||..|+..-+.. ...||.|.
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3455699998742 222 267888999998643332 23577774
No 138
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.69 E-value=6.7 Score=25.88 Aligned_cols=46 Identities=17% Similarity=0.423 Sum_probs=29.0
Q ss_pred CccceeeccccCcc---Cc--EEcCCCCcccHHhHHHHHhc----CCCCcccccc
Q 042225 70 EVRFTCGICLDTMK---EE--SSTKCGHVFCKSCIVDAIRL----QGRCPTCRTR 115 (135)
Q Consensus 70 ~~~~~C~IC~~~~~---~p--~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 115 (135)
.....|.+|...|. +. +-..|.|.+|..|-...... ...|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35677999999773 21 33479999999986432111 1247777553
No 139
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.38 E-value=28 Score=19.92 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=5.0
Q ss_pred eeeccccCcc
Q 042225 74 TCGICLDTMK 83 (135)
Q Consensus 74 ~C~IC~~~~~ 83 (135)
.|..|...+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 1x63_A 17 KCKGCFKAIV 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCcccc
Confidence 3555555444
No 140
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=41.33 E-value=31 Score=19.88 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=27.8
Q ss_pred CccceeeccccCccCcEEc--C--CC-CcccHHhHHHHHh----cCCCCcccccccc
Q 042225 70 EVRFTCGICLDTMKEESST--K--CG-HVFCKSCIVDAIR----LQGRCPTCRTRMS 117 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 117 (135)
.+...| ||.......++. . |. .-||..|+. +. ....||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 456678 898864443222 3 55 469999986 22 2346999976543
No 141
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.20 E-value=14 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.606 Sum_probs=16.5
Q ss_pred cceeeccccCccCc-EEcCCCCcccHHhHHHHH
Q 042225 72 RFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAI 103 (135)
Q Consensus 72 ~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~ 103 (135)
-+.|..|...+... ....-|..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 35566666555542 222345556666665443
No 142
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=40.51 E-value=27 Score=20.15 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCccceeeccccCc---cCcEEc--CCCCcccHHhHHHHHh--cCCCCccccc
Q 042225 68 VGEVRFTCGICLDTM---KEESST--KCGHVFCKSCIVDAIR--LQGRCPTCRT 114 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~---~~p~~~--~CgH~fc~~Ci~~~~~--~~~~CP~Cr~ 114 (135)
....+..|.||...- .+.+.+ .|.-.|+..|+..-.. ....|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 445667799998753 223333 6888999999864322 2346888754
No 143
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.27 E-value=21 Score=21.66 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=20.8
Q ss_pred ccceeeccccCcc--CcEEcCCCCcccHH
Q 042225 71 VRFTCGICLDTMK--EESSTKCGHVFCKS 97 (135)
Q Consensus 71 ~~~~C~IC~~~~~--~p~~~~CgH~fc~~ 97 (135)
....|..|...+- .+..-.||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3467999998554 37777899999984
No 144
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=38.72 E-value=5.4 Score=27.73 Aligned_cols=44 Identities=18% Similarity=0.447 Sum_probs=27.0
Q ss_pred ceeeccccCccCcEEcCCCCcccHHhHHHHHh----cCCCCccccccc
Q 042225 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIR----LQGRCPTCRTRM 116 (135)
Q Consensus 73 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 116 (135)
..|.+|.+.-.--..-.|...||..|+..-+. ....||.|+..-
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 35888886432111225777899999865433 234699997653
No 145
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=37.74 E-value=3.8 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=17.5
Q ss_pred CCCCccccccccccCceeecCC
Q 042225 106 QGRCPTCRTRMSVRSIRRIFFP 127 (135)
Q Consensus 106 ~~~CP~Cr~~~~~~~~~~~~~~ 127 (135)
...||+|.+++...+++..++.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~ 29 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLI 29 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTT
T ss_pred cccCCcCCCccCHHHHHHHHHh
Confidence 4579999999998888776654
No 146
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.46 E-value=12 Score=25.17 Aligned_cols=29 Identities=28% Similarity=0.717 Sum_probs=22.1
Q ss_pred ccceeeccccCcc---Cc--EEcCCCCcccHHhH
Q 042225 71 VRFTCGICLDTMK---EE--SSTKCGHVFCKSCI 99 (135)
Q Consensus 71 ~~~~C~IC~~~~~---~p--~~~~CgH~fc~~Ci 99 (135)
..-.|.+|...|. +. +-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5778999999753 22 34579999999996
No 147
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.02 E-value=7.3 Score=24.39 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=23.3
Q ss_pred CccceeeccccCccC-c-EE-cCCCCcccHHhHHHHHh
Q 042225 70 EVRFTCGICLDTMKE-E-SS-TKCGHVFCKSCIVDAIR 104 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~-p-~~-~~CgH~fc~~Ci~~~~~ 104 (135)
..+..|.+|.+.-.. . +. ..|+..||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 345669999875432 1 22 37899999999976543
No 148
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.43 E-value=28 Score=19.39 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=11.7
Q ss_pred ceeeccccCccCc-EEcCCCCcccHHhH
Q 042225 73 FTCGICLDTMKEE-SSTKCGHVFCKSCI 99 (135)
Q Consensus 73 ~~C~IC~~~~~~p-~~~~CgH~fc~~Ci 99 (135)
+.|..|...+... ....=|..||..|.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c~ 63 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDCG 63 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhHc
Confidence 4455555444322 22234444555554
No 149
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.39 E-value=1.9 Score=26.07 Aligned_cols=28 Identities=25% Similarity=0.575 Sum_probs=19.2
Q ss_pred eeccccCcc-----CcEEcC-CCCcccHHhHHHH
Q 042225 75 CGICLDTMK-----EESSTK-CGHVFCKSCIVDA 102 (135)
Q Consensus 75 C~IC~~~~~-----~p~~~~-CgH~fc~~Ci~~~ 102 (135)
||-|...+. ..+.-+ ||+.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 665655332 224554 9999999999887
No 150
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.20 E-value=51 Score=20.50 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=10.5
Q ss_pred CCCCcccHHhHH
Q 042225 89 KCGHVFCKSCIV 100 (135)
Q Consensus 89 ~CgH~fc~~Ci~ 100 (135)
.|+..||..|+.
T Consensus 31 ~C~~~~H~~Cl~ 42 (112)
T 3v43_A 31 DCGNSGHPSCLK 42 (112)
T ss_dssp TTCCEECHHHHT
T ss_pred hcCCCCCCchhc
Confidence 699999999994
No 151
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.08 E-value=42 Score=19.22 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=21.2
Q ss_pred CCccceeeccccCccC-cEEcCCCCcccHH
Q 042225 69 GEVRFTCGICLDTMKE-ESSTKCGHVFCKS 97 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 97 (135)
......|..|...+.- +..-.||..||..
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 3345679999986443 5666899999984
No 152
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.03 E-value=27 Score=19.88 Aligned_cols=30 Identities=13% Similarity=0.494 Sum_probs=15.0
Q ss_pred cceeeccccCccC-cEEcCCCCcccHHhHHH
Q 042225 72 RFTCGICLDTMKE-ESSTKCGHVFCKSCIVD 101 (135)
Q Consensus 72 ~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~ 101 (135)
-+.|..|...+.. .....=|..||..|..+
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 71 (80)
T 2cuq_A 41 CLVCTGCQTPLAGQQFTSRDEDPYCVACFGE 71 (80)
T ss_dssp TCBCSSSCCBCTTCCEEECSSSEEEHHHHHH
T ss_pred hCCcccCCCcCCCCeeEeECCEEECHHHHHH
Confidence 3555555555542 23334455566666543
No 153
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=35.68 E-value=2.9 Score=24.40 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecCCCCC
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQLQ 130 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 130 (135)
.-+.+.||+|...+.-.. ....-.|+.|+..+..++-+++.++.-+
T Consensus 5 LL~iL~CP~ck~~L~~~~----------------~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFDK----------------SKDELICKGDRLAFPIKDGIPMMLESEA 50 (68)
T ss_dssp CEEECBCTTTCCBCEEET----------------TTTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred HhhheECCCCCCcCeEeC----------------CCCEEEcCCCCcEecCCCCeeeeChhhc
Confidence 445678999998665210 0112358888888888888888887643
No 154
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.18 E-value=30 Score=19.56 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=17.3
Q ss_pred ccceeeccccCcc--CcEEcCCCCcccHHhHHHH
Q 042225 71 VRFTCGICLDTMK--EESSTKCGHVFCKSCIVDA 102 (135)
Q Consensus 71 ~~~~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~ 102 (135)
+-+.|..|...+. ......=|..||..|....
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 3466666666665 2233344556666666543
No 155
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.79 E-value=4.8 Score=23.57 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=30.5
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecCCCCC
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQLQ 130 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 130 (135)
.-+.+.||+|...+.-.. . ...-.|+.|+..+..++-+++.++.-+
T Consensus 5 LL~iL~CP~ck~~L~~~~--~--------------~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQR--A--------------QAELVCNADRLAFPVRDGVPIMLEAEA 50 (70)
T ss_dssp CCCCCBCTTTCCBEEEET--T--------------TTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred HhhheECCCCCCcCEEeC--C--------------CCEEEcCCCCceecCCCCeeeeChhhc
Confidence 445678999998665210 0 112358888888888888888877633
No 156
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.73 E-value=34 Score=19.64 Aligned_cols=27 Identities=22% Similarity=0.725 Sum_probs=11.1
Q ss_pred ceeeccccCccCcEEcCCCCcccHHhH
Q 042225 73 FTCGICLDTMKEESSTKCGHVFCKSCI 99 (135)
Q Consensus 73 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci 99 (135)
+.|..|...+.......=|..||..|.
T Consensus 42 F~C~~C~~~L~~~~f~~~g~~yC~~cy 68 (79)
T 2cor_A 42 FNCANCGKELTADARELKGELYCLPCH 68 (79)
T ss_dssp SBCSSSCCBCCTTCEEETTEEECHHHH
T ss_pred CEeCCCCCccCCCCEeECCEEeCHHHH
Confidence 444444444443222223344444443
No 157
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=34.68 E-value=42 Score=22.78 Aligned_cols=35 Identities=20% Similarity=0.527 Sum_probs=26.1
Q ss_pred ccceeeccccCccCc-EEcCCCCcccHHhHHHHHhc
Q 042225 71 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRL 105 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~ 105 (135)
+-+.|..|...+... ....=|..||..|..+.+..
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 567888998888764 34456778999999887653
No 158
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.62 E-value=27 Score=19.34 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=11.9
Q ss_pred ceeeccccCccCc-EEcCCCCcccHHhHH
Q 042225 73 FTCGICLDTMKEE-SSTKCGHVFCKSCIV 100 (135)
Q Consensus 73 ~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~ 100 (135)
+.|..|...+... ....=|..||..|..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYE 62 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHh
Confidence 4445554444432 222234445555543
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.11 E-value=27 Score=19.78 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.7
Q ss_pred eeccccCcc
Q 042225 75 CGICLDTMK 83 (135)
Q Consensus 75 C~IC~~~~~ 83 (135)
|..|...+.
T Consensus 8 C~~C~~~I~ 16 (76)
T 1x68_A 8 CVACSKPIS 16 (76)
T ss_dssp CTTTCCCCC
T ss_pred CccCCCccc
Confidence 555555444
No 160
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.86 E-value=24 Score=19.95 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=4.0
Q ss_pred eeccccCcc
Q 042225 75 CGICLDTMK 83 (135)
Q Consensus 75 C~IC~~~~~ 83 (135)
|..|.+.+.
T Consensus 12 C~~C~~~I~ 20 (76)
T 2cu8_A 12 CPKCDKTVY 20 (76)
T ss_dssp CTTTCCBCC
T ss_pred CcCCCCEeE
Confidence 444444433
No 161
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.81 E-value=5.5 Score=23.13 Aligned_cols=46 Identities=2% Similarity=-0.162 Sum_probs=31.0
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecCCCCC
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQLQ 130 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 130 (135)
.-+.+.||+|...+.--. . ...-.|+.|+..+..++=+++.++..+
T Consensus 7 LLeiL~CP~ck~~L~~~~--~--------------~g~LvC~~c~~~YPI~dGIPvmL~~Ea 52 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYLE--S--------------EQLLVNERLNLAYRIDDGIPVLLIDEA 52 (67)
T ss_dssp GTCCCBCTTTCCBCEEET--T--------------TTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred HHHHhCCCCCCCcCeEeC--C--------------CCEEEcCCCCccccCCCCEeeeChhHh
Confidence 446678999998665210 0 112358888888888888888887644
No 162
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.48 E-value=19 Score=20.89 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=20.3
Q ss_pred CccceeeccccCccCc----EEcCCCCcccHH
Q 042225 70 EVRFTCGICLDTMKEE----SSTKCGHVFCKS 97 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p----~~~~CgH~fc~~ 97 (135)
....+|..|...+.-+ ..-.||..||..
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 3456799999876654 345899999974
No 163
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.56 E-value=22 Score=24.18 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=27.9
Q ss_pred CccceeeccccCccCcEE---cCCCCcccHHhHHHHHhc----------CCCCccccc
Q 042225 70 EVRFTCGICLDTMKEESS---TKCGHVFCKSCIVDAIRL----------QGRCPTCRT 114 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~---~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 114 (135)
..+..|.+|-+--. -+. ..|-..||..||...+.. ...|-+|.-
T Consensus 77 G~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 34566788876321 111 147789999999887652 235888853
No 164
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.73 E-value=31 Score=21.05 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=27.5
Q ss_pred CccceeeccccCccCcEEcC-----CC-CcccHHhHHHHHh----cCCCCcccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTK-----CG-HVFCKSCIVDAIR----LQGRCPTCRTRMS 117 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~-----Cg-H~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 117 (135)
.+...| +|....... .+. |. .-||..|+. +. ....||.|+....
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 456678 998865432 333 54 459999985 22 2357999976543
No 165
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.73 E-value=3.9 Score=25.10 Aligned_cols=46 Identities=17% Similarity=0.450 Sum_probs=27.7
Q ss_pred CccceeeccccCccC-cEEc--CCCCcccHHhHHHHHh----cCCCCcccccc
Q 042225 70 EVRFTCGICLDTMKE-ESST--KCGHVFCKSCIVDAIR----LQGRCPTCRTR 115 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~-p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 115 (135)
.+...|.||...-.. .+++ .|...||..|+..-+. ....||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345568999875432 2222 5777888888864332 22358888653
No 166
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.72 E-value=51 Score=18.02 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=22.1
Q ss_pred ccceeeccccCccC-cEEcCCCCcccHHhHHHHHh
Q 042225 71 VRFTCGICLDTMKE-ESSTKCGHVFCKSCIVDAIR 104 (135)
Q Consensus 71 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~ 104 (135)
+-+.|..|...+.. .....=|..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 35677888777754 33445577788888765543
No 167
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.55 E-value=57 Score=19.19 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=20.4
Q ss_pred CccceeeccccCccC-cEEcCCCCcccHH
Q 042225 70 EVRFTCGICLDTMKE-ESSTKCGHVFCKS 97 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 97 (135)
....+|..|...+.- +..-.||..||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 345679999875443 5666899999984
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.37 E-value=2.2 Score=26.81 Aligned_cols=40 Identities=28% Similarity=0.772 Sum_probs=23.9
Q ss_pred ceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 73 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 73 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
..||+|...+... =++.+|..|-.. +.....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 6799999876521 123347777543 223346888877764
No 169
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.32 E-value=24 Score=22.45 Aligned_cols=38 Identities=13% Similarity=0.464 Sum_probs=22.0
Q ss_pred cceeeccccCccCc-EEcCCCCcccHHhHHHHHhcCCCCcccccccc
Q 042225 72 RFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMS 117 (135)
Q Consensus 72 ~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 117 (135)
...|..|...+... +...-|..||..|.. |-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~--------C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLK--------CSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSB--------CTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccC--------cCcCCCccc
Confidence 35677777766654 244445555566552 556666654
No 170
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.77 E-value=23 Score=20.31 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=14.5
Q ss_pred cceeeccccCccCcEEc-C-CCCcccHHhHHH
Q 042225 72 RFTCGICLDTMKEESST-K-CGHVFCKSCIVD 101 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~-~-CgH~fc~~Ci~~ 101 (135)
-+.|..|...+...... . =|..||..|..+
T Consensus 41 CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 41 CFTCVVCHRGLDGIPFTVDATSQIHCIEDFHR 72 (81)
T ss_dssp TCBCSSSCCBCTTSCEECCTTCCCEEHHHHHH
T ss_pred hcCcccCCCccCCCeeEECCCCEEECHHHHHH
Confidence 35555665555433222 2 245566666543
No 171
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.61 E-value=43 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=24.8
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHhc-----CCCCcccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-----QGRCPTCRTRMSVR 119 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 119 (135)
...+.|++|...|... .-+...++. ...|+.|.+.|...
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 4457899998887763 333334332 23699998888643
No 172
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.33 E-value=73 Score=18.57 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=21.3
Q ss_pred ccceeeccccCccCc-EEcCCCCcccHHhHHHHH
Q 042225 71 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAI 103 (135)
Q Consensus 71 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~ 103 (135)
+-+.|..|...+... ....=|..||..|..+.+
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 346777787776653 344556778888876543
No 173
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.24 E-value=4 Score=23.87 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=29.7
Q ss_pred CCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCccccccccccCceeecCCCCC
Q 042225 69 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSVRSIRRIFFPQLQ 130 (135)
Q Consensus 69 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 130 (135)
.-+.+.||+|...+.-.. ....-.|+.|+..+..++-+++.++.-+
T Consensus 5 LLeiL~CP~ck~~L~~~~----------------~~~~LiC~~cg~~YPI~dGIPvmL~~ea 50 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSA----------------DKTELISKGAGLAYPIRDGIPVMLESEA 50 (69)
T ss_dssp GGGTCCCTTTCCCCEECT----------------TSSEEEETTTTEEEEEETTEECCCGGGC
T ss_pred HHhheeCCCCCCcCeEeC----------------CCCEEEcCCCCcEecCcCCeeeeChhhc
Confidence 345677999998665210 0112358888888888888888876643
No 174
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.53 E-value=54 Score=19.31 Aligned_cols=27 Identities=22% Similarity=0.646 Sum_probs=19.8
Q ss_pred ccceeeccccCcc-CcEEcCCCCcccHH
Q 042225 71 VRFTCGICLDTMK-EESSTKCGHVFCKS 97 (135)
Q Consensus 71 ~~~~C~IC~~~~~-~p~~~~CgH~fc~~ 97 (135)
...+|..|...+. .+..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 3567999988543 35666799999974
No 175
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=28.42 E-value=27 Score=29.48 Aligned_cols=32 Identities=31% Similarity=0.791 Sum_probs=23.8
Q ss_pred eeeccccCccCc----------EEcCCCCcccHHhHHHHHhc
Q 042225 74 TCGICLDTMKEE----------SSTKCGHVFCKSCIVDAIRL 105 (135)
Q Consensus 74 ~C~IC~~~~~~p----------~~~~CgH~fc~~Ci~~~~~~ 105 (135)
.||+|.....+. ..++||-+||..|.+.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 15 TCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp SSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 477887655532 56789999999999877653
No 176
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.38 E-value=21 Score=22.55 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=18.8
Q ss_pred cceeeccccCccCcEEcCCCCcccH
Q 042225 72 RFTCGICLDTMKEESSTKCGHVFCK 96 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~~CgH~fc~ 96 (135)
...|..|...-..-+-+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 3458888876555568899999984
No 177
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.34 E-value=67 Score=18.17 Aligned_cols=34 Identities=15% Similarity=0.496 Sum_probs=21.9
Q ss_pred ccceeeccccCccC--cEEc-CCCCcccHHhHHHHHh
Q 042225 71 VRFTCGICLDTMKE--ESST-KCGHVFCKSCIVDAIR 104 (135)
Q Consensus 71 ~~~~C~IC~~~~~~--p~~~-~CgH~fc~~Ci~~~~~ 104 (135)
+-+.|..|...+.. ...+ .=|..||..|..+.+.
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 45677788877753 3342 5667788888766544
No 178
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=27.00 E-value=44 Score=19.45 Aligned_cols=31 Identities=16% Similarity=0.612 Sum_probs=23.4
Q ss_pred ccceeeccccCc-c--CcEEcCCCCcccHHhHHH
Q 042225 71 VRFTCGICLDTM-K--EESSTKCGHVFCKSCIVD 101 (135)
Q Consensus 71 ~~~~C~IC~~~~-~--~p~~~~CgH~fc~~Ci~~ 101 (135)
.++.|.+|.+.- . ...-+.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 357799998643 2 235678999999999986
No 179
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.99 E-value=12 Score=22.61 Aligned_cols=47 Identities=17% Similarity=0.541 Sum_probs=31.9
Q ss_pred ccceeeccccCcc---CcEEc--CCCCcccHHhHHHHHh--------cCCCCcccccccc
Q 042225 71 VRFTCGICLDTMK---EESST--KCGHVFCKSCIVDAIR--------LQGRCPTCRTRMS 117 (135)
Q Consensus 71 ~~~~C~IC~~~~~---~p~~~--~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 117 (135)
.+..|.+|...-. +.+.+ .|...||..|+..-+. ....|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4567999997543 34443 6888999999975432 2357999966554
No 180
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=26.62 E-value=16 Score=17.08 Aligned_cols=10 Identities=40% Similarity=1.218 Sum_probs=5.2
Q ss_pred CCcccccccc
Q 042225 108 RCPTCRTRMS 117 (135)
Q Consensus 108 ~CP~Cr~~~~ 117 (135)
.||+|...+.
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 3666655443
No 181
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.57 E-value=25 Score=20.38 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=10.9
Q ss_pred ceeeccccCccCcEEcCCCCcccHHhH
Q 042225 73 FTCGICLDTMKEESSTKCGHVFCKSCI 99 (135)
Q Consensus 73 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci 99 (135)
+.|..|...+.......=|..||..|.
T Consensus 43 F~C~~C~~~L~~~~~~~~g~~yC~~~y 69 (80)
T 2dj7_A 43 FKCQTCSVILTGEYISKDGVPYCESDY 69 (80)
T ss_dssp CBCSSSCCBCSSCCEEETTEEECTTHH
T ss_pred CCcCcCCCCcCCCeEEECCEEECHHHH
Confidence 444444444433222223344444444
No 182
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.64 E-value=47 Score=18.93 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=17.2
Q ss_pred eeeccccCcc--CcEEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 74 TCGICLDTMK--EESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 74 ~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
.|..|...+. ..++..-+..||..| +.|-.|...+..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred cCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCC
Confidence 4666666555 222222344444433 235556555543
No 183
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.54 E-value=32 Score=18.84 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=4.8
Q ss_pred CCcccccccc
Q 042225 108 RCPTCRTRMS 117 (135)
Q Consensus 108 ~CP~Cr~~~~ 117 (135)
.|-.|+.++.
T Consensus 34 ~C~~C~~~L~ 43 (65)
T 2iyb_E 34 LCSCCSKCLI 43 (65)
T ss_dssp BCTTTCCBCT
T ss_pred ECCCCCCcCC
Confidence 3445554443
No 184
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.95 E-value=63 Score=19.44 Aligned_cols=29 Identities=21% Similarity=0.547 Sum_probs=21.6
Q ss_pred CCccceeec--cccCccCcEEcC-CCCcccHH
Q 042225 69 GEVRFTCGI--CLDTMKEESSTK-CGHVFCKS 97 (135)
Q Consensus 69 ~~~~~~C~I--C~~~~~~p~~~~-CgH~fc~~ 97 (135)
......|.. |......++.-. |+..||..
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CSCCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 344677988 998755677666 99999974
No 185
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.60 E-value=51 Score=20.62 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=26.3
Q ss_pred ccceeeccccCcc--CcEEcCCCCcccHHhHHHHHh
Q 042225 71 VRFTCGICLDTMK--EESSTKCGHVFCKSCIVDAIR 104 (135)
Q Consensus 71 ~~~~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~~~ 104 (135)
.-+.|..|...+. +.....=|..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 4678899999884 345666788999999987765
No 186
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=59 Score=18.20 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=30.1
Q ss_pred ccceeeccccCccC-cEEcCCCCcccH-HhHHHHHhcCCCCccccccc
Q 042225 71 VRFTCGICLDTMKE-ESSTKCGHVFCK-SCIVDAIRLQGRCPTCRTRM 116 (135)
Q Consensus 71 ~~~~C~IC~~~~~~-p~~~~CgH~fc~-~Ci~~~~~~~~~CP~Cr~~~ 116 (135)
+-+.|..|...+.. .....=|..||. .|..+. ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 45778899988875 445566778999 598654 345677776443
No 187
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=24.43 E-value=13 Score=21.48 Aligned_cols=41 Identities=22% Similarity=0.625 Sum_probs=24.9
Q ss_pred eeeccccCccCcEEc---CCCCcccHHhHHHHHh----c-CCCCccccc
Q 042225 74 TCGICLDTMKEESST---KCGHVFCKSCIVDAIR----L-QGRCPTCRT 114 (135)
Q Consensus 74 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 114 (135)
.|.+|...-.....+ .|...||..|+..-+. . .-.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456777533222232 5888899999975443 1 346888864
No 188
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.38 E-value=8.9 Score=22.74 Aligned_cols=41 Identities=22% Similarity=0.625 Sum_probs=24.8
Q ss_pred eeeccccCccCcEEc---CCCCcccHHhHHHHHhc----C-CCCccccc
Q 042225 74 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRL----Q-GRCPTCRT 114 (135)
Q Consensus 74 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~~----~-~~CP~Cr~ 114 (135)
.|.+|...-.....+ .|...||..|+..-+.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676644333333 58888999998754442 2 46888853
No 189
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.18 E-value=41 Score=18.88 Aligned_cols=38 Identities=16% Similarity=0.443 Sum_probs=21.3
Q ss_pred ceeeccccCccC-----cEEcCCCCcccHHhHHHHHhcCCCCccccccccc
Q 042225 73 FTCGICLDTMKE-----ESSTKCGHVFCKSCIVDAIRLQGRCPTCRTRMSV 118 (135)
Q Consensus 73 ~~C~IC~~~~~~-----p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (135)
..|+.|...+.. .+...-+..||..| +.|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCC
Confidence 357777776663 33333444555544 346777776654
No 190
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=24.16 E-value=47 Score=16.74 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=20.6
Q ss_pred cceeeccccCccCcEEcCCCCcccHHhHHHHHh-----cCCCCccccccccc
Q 042225 72 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-----LQGRCPTCRTRMSV 118 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 118 (135)
.+.|.+|...|... .-+...+. ....|+.|.+.+..
T Consensus 4 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSN-----------YYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCH-----------HHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCCh-----------HHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 46688888777653 22222222 22469999887754
No 191
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.81 E-value=45 Score=18.65 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=4.5
Q ss_pred eeeccccCc
Q 042225 74 TCGICLDTM 82 (135)
Q Consensus 74 ~C~IC~~~~ 82 (135)
.|..|...+
T Consensus 13 ~C~~C~~~I 21 (77)
T 1g47_A 13 TCERCKGGF 21 (77)
T ss_dssp BCSSSCCBC
T ss_pred CchhcCCcc
Confidence 355555544
No 192
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.77 E-value=72 Score=18.02 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=18.7
Q ss_pred ccceeec--cccCccCcEEcC-CCCcccHH
Q 042225 71 VRFTCGI--CLDTMKEESSTK-CGHVFCKS 97 (135)
Q Consensus 71 ~~~~C~I--C~~~~~~p~~~~-CgH~fc~~ 97 (135)
....|.. |...-..++.-. |+..||..
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc
Confidence 3456887 887644565555 99999874
No 193
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.55 E-value=88 Score=17.82 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=29.1
Q ss_pred CccceeeccccCccCcEEc---CCCCcccHHhHHHH---------HhcCCCCccccccc
Q 042225 70 EVRFTCGICLDTMKEESST---KCGHVFCKSCIVDA---------IRLQGRCPTCRTRM 116 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~---------~~~~~~CP~Cr~~~ 116 (135)
.....| +|.........+ .|..=||..|+.-. ......||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345667 898876543333 57777999998311 12457899997543
No 194
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.26 E-value=76 Score=17.81 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=19.8
Q ss_pred ccceeeccccCccC-cEEcCCCCcccHHhHHHH
Q 042225 71 VRFTCGICLDTMKE-ESSTKCGHVFCKSCIVDA 102 (135)
Q Consensus 71 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~ 102 (135)
+-+.|..|...+.. .....=|..||..|..+.
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 34667777776664 234455667777776554
No 195
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.06 E-value=65 Score=17.37 Aligned_cols=38 Identities=13% Similarity=0.429 Sum_probs=23.3
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHh-----cCCCCccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-----LQGRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 118 (135)
...+.|.+|...|... .-+...+. ....|+.|.+.+..
T Consensus 15 ~~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 4467899998887753 22222222 12369999887754
No 196
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.74 E-value=21 Score=16.93 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=5.3
Q ss_pred ceeeccccCcc
Q 042225 73 FTCGICLDTMK 83 (135)
Q Consensus 73 ~~C~IC~~~~~ 83 (135)
+.|++|...+-
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 44555554433
No 197
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.91 E-value=90 Score=16.67 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=23.0
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHh-----cCCCCccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-----LQGRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 118 (135)
...+.|.+|...|... .-+...+. ....|+.|.+.+..
T Consensus 12 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 3467899988877653 22222222 12469999887754
No 198
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.28 E-value=13 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.583 Sum_probs=25.7
Q ss_pred eeeccccCccCc-EEc--CCCCcccHHhHHHHHh----c-CCCCccccc
Q 042225 74 TCGICLDTMKEE-SST--KCGHVFCKSCIVDAIR----L-QGRCPTCRT 114 (135)
Q Consensus 74 ~C~IC~~~~~~p-~~~--~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 114 (135)
.|.||...-... +.+ .|...||..|+..-+. . .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 578888643322 222 6888899999875333 1 346888753
No 199
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.70 E-value=30 Score=19.04 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCccceeeccccCccCcEEcCCCCcccHHhHHHHHhcCCCCc--cccccccccCceeecCCCCCC
Q 042225 68 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGRCP--TCRTRMSVRSIRRIFFPQLQP 131 (135)
Q Consensus 68 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP--~Cr~~~~~~~~~~~~~~~~~~ 131 (135)
..-+.+.||+|...+.-.. ..-.|+ .|+..+..++=+++.++..+-
T Consensus 6 ~lL~iL~CP~c~~~L~~~~------------------~~L~C~~~~c~~~YPI~dGIPvlL~~ear 53 (56)
T 2kpi_A 6 GLLEILACPACHAPLEERD------------------AELICTGQDCGLAYPVRDGIPVLLVDEAR 53 (56)
T ss_dssp SCTTSCCCSSSCSCEEEET------------------TEEEECSSSCCCEEEEETTEECCCTTTCB
T ss_pred HHHhheeCCCCCCcceecC------------------CEEEcCCcCCCcEEeeECCEeeeCHHHcc
Confidence 3456778999998655210 122466 677777777777887766543
No 200
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.67 E-value=95 Score=15.58 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=23.3
Q ss_pred CccceeeccccCccCcEEcCCCCcccHHhHHHHHh------cCCCCccccccccc
Q 042225 70 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR------LQGRCPTCRTRMSV 118 (135)
Q Consensus 70 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 118 (135)
...+.|.+|...|... .-+...++ ....|+.|.+.+..
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 3457788888777653 33333332 12479999887753
No 201
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.50 E-value=24 Score=24.44 Aligned_cols=45 Identities=18% Similarity=0.430 Sum_probs=29.5
Q ss_pred ceeeccccCccCcE----Ec---CCCCcccHHhHHH------HHh-----cCCCCcccccccc
Q 042225 73 FTCGICLDTMKEES----ST---KCGHVFCKSCIVD------AIR-----LQGRCPTCRTRMS 117 (135)
Q Consensus 73 ~~C~IC~~~~~~p~----~~---~CgH~fc~~Ci~~------~~~-----~~~~CP~Cr~~~~ 117 (135)
..|+||...+.+.- .+ .|..-||..|+.- .+. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 35999998776532 33 4777788888732 111 2578999987543
No 202
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.45 E-value=99 Score=18.91 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=26.7
Q ss_pred ccceeeccccCccC---cEEcCCCCcccHHhHHHHHhcC
Q 042225 71 VRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQ 106 (135)
Q Consensus 71 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~ 106 (135)
+-+.|..|...+.+ .....=|..||..|..+.+...
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 46789999988864 4445567789999998776644
No 203
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.23 E-value=43 Score=18.19 Aligned_cols=37 Identities=24% Similarity=0.533 Sum_probs=21.9
Q ss_pred cceeeccccCccCcEEcCCCCcccHHhHHHHHh-----cCCCCcccccccccc
Q 042225 72 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-----LQGRCPTCRTRMSVR 119 (135)
Q Consensus 72 ~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 119 (135)
.+.|.+|...|... .-+...+. ....|+.|.+.+...
T Consensus 4 py~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 4 PFFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CEECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 35677777766653 23333333 223699998888643
Done!