BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042226
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 131/197 (66%), Gaps = 4/197 (2%)
Query: 23 EPSPLQDFCVADPSG-SVRVNGFACMDPKLAQASHFSFSG-LHVAGNTENPLGSRVTPVT 80
+P PLQDFCVAD G +V VNG C P F FS L AGNT P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTS-NPENRLIT 139
VA+ PG NTLGVS+AR+D+AP G PPH+HPRATEI V++G L VG + S + N+L +
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 140 KVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPAIAADILA 199
+V++ G+ FV P GL+HFQ NVG A+ + + +SQNPG++ + +FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 200 KAFQVDKSVVDQLQTKF 216
KA +V+ VV+ L++KF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 130/197 (65%), Gaps = 4/197 (2%)
Query: 23 EPSPLQDFCVADPSG-SVRVNGFACMDPKLAQASHFSFSG-LHVAGNTENPLGSRVTPVT 80
+P PLQDFCVAD G +V VNG C P F FS L AGNT P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTS-NPENRLIT 139
VA+ PG NTLGVS+ R+D+AP G PPH+HPRATEI V++G L VG + S + N+L +
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 140 KVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPAIAADILA 199
+V++ G+ FV P GL+HFQ NVG A+ + + +SQNPG++ + +FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 200 KAFQVDKSVVDQLQTKF 216
KA +V+ VV+ L++KF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 130/197 (65%), Gaps = 4/197 (2%)
Query: 23 EPSPLQDFCVADPSG-SVRVNGFACMDPKLAQASHFSFSG-LHVAGNTENPLGSRVTPVT 80
+P PLQDFCVAD G +V VNG C P F FS L AGNT P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81 VAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTS-NPENRLIT 139
VA+ PG NTLGVS+ R+D+AP G PPH+HPRATEI V++G L VG + S + N+L +
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 140 KVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPAIAADILA 199
+V++ G+ FV P GL+HFQ NVG A+ + + +SQNPG++ + +FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 200 KAFQVDKSVVDQLQTKF 216
KA +V+ VV+ L++KF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 66 GNTENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHV 109
GN E L SR+T +A+ P L + V A +D+ PW +PPHV
Sbjct: 30 GNVEAALVSRITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHV 73
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 129
NP R++ + +P L G+S + G+ PH + A ++ V G V V
Sbjct: 345 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV 404
Query: 130 TSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGS 189
N + L++G + V P V ++ G + + + + V + VF
Sbjct: 405 NXQ-GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHHNAVSSYIKDVFR- 460
Query: 190 NPAIAADILAKAFQVDKSVVDQLQTK 215
AI +++L+ ++ + +S V QL+ +
Sbjct: 461 --AIPSEVLSNSYNLGQSQVRQLKYQ 484
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 129
NP R++ + +P L G+S + G+ PH + A ++ V G V V
Sbjct: 344 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV 403
Query: 130 TSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGS 189
N + L++G + V P V ++ G + + + + V + VF
Sbjct: 404 NCQ-GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHHNAVSSYIKDVFR- 459
Query: 190 NPAIAADILAKAFQVDKSVVDQLQTK 215
AI +++L+ ++ + +S V QL+ +
Sbjct: 460 --AIPSEVLSNSYNLGQSQVRQLKYQ 483
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 73 GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN 132
G+ + + + PG + ++ A I P + H HP A E V++G +++ S
Sbjct: 217 GNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFAS- 273
Query: 133 PENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIA--------- 183
E + LQ+GDV P G H RN SSQ P I +
Sbjct: 274 -EGKASVSRLQQGDVGYVPKGYGHAIRN------------SSQKPLDIVVVFNDGDYQSI 320
Query: 184 --NAVFGSNPAIAADILAKAFQVDKSVVDQL 212
+ SNP + +L FQ+ + +L
Sbjct: 321 DLSTWLASNP---SSVLGNTFQISPELTKKL 348
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H H A E V+EG + ++PE ++ + KG ++ FP G H +G
Sbjct: 68 HWHANAAEWAYVMEGRTRI--TLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIG 120
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 84 IPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQ 143
I N L +++ G H H E+ V EG+L++ F N IT LQ
Sbjct: 25 IAEXNDYQFKLVKVE----GEFVWHEHADTDEVFIVXEGTLQIAFRDQN-----IT--LQ 73
Query: 144 KGDVFVFPIGLVH 156
G+ +V P G+ H
Sbjct: 74 AGEXYVIPKGVEH 86
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 33/170 (19%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIAELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174
E +I GS V V + + R + +GD++ FP GL H SI AL
Sbjct: 101 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SIQALEE 147
Query: 175 QNPGVITIANAVFGSNPAIA---------ADILAKAFQVDKSVVDQLQTK 215
++ + F N +++A F V K + L K
Sbjct: 148 GAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 273 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 63/170 (37%), Gaps = 33/170 (19%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174
E +I GS V V + + R + +GD++ FP GL H SI AL
Sbjct: 101 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SIQALEE 147
Query: 175 QNPGVITIANAVFGSNPAIA---------ADILAKAFQVDKSVVDQLQTK 215
++ + F +N +++A F V K + L K
Sbjct: 148 GAEFLLVFDDGSFSANSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 273 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 33/170 (19%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174
E +I GS V V + + R + +GD++ FP GL H SI AL
Sbjct: 101 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SIQALEE 147
Query: 175 QNPGVITIANAVFGSNPAIA---------ADILAKAFQVDKSVVDQLQTK 215
++ + F N +++A F V K + L K
Sbjct: 148 GAEFLLVFDDGSFAENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 273 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
>pdb|4HD1|A Chain A, Crystal Structure Of Squalene Synthase Hpnc From
Alicyclobacillus Acidocaldarius
Length = 294
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 27 LQDFCV--ADPSGSVRVNGFACMDPKLAQASHFSFSGLHVAGNTEN 70
L+D+C ADP G + + F C+D + A+ S + + L VA + ++
Sbjct: 128 LRDYCRYSADPVGRLVLGIFGCLDDERARLSDATCTALQVANHXQD 173
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 33/170 (19%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174
E +I GS V V + + R + +GD++ FP GL H SI AL
Sbjct: 101 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SIQALEE 147
Query: 175 QNPGVITIANAVFGSNPAIA---------ADILAKAFQVDKSVVDQLQTK 215
++ + F N +++A F V K + L K
Sbjct: 148 GAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 273 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAF 167
E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 101 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 273 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAF 167
E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 101 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 271 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 323
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 88 NTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV-----TSNPENRLITKVL 142
N+L V ++ I+ + PH + +A IL V EG V V E L
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 294
Query: 143 QKGDVFVFP 151
K DVFV P
Sbjct: 295 SKDDVFVIP 303
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 33/170 (19%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 45 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHWHKEA- 95
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174
E +I GS V V + + R + +GD++ FP GL H SI AL
Sbjct: 96 EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SIQALEE 142
Query: 175 QNPGVITIANAVFGSNPAIA---------ADILAKAFQVDKSVVDQLQTK 215
++ + F N +++A F V K + L K
Sbjct: 143 GAEFLLVFDDGSFSENSVFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 192
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
H HP E I G + S+ R Q GDV P + H+ N+G
Sbjct: 268 HWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 320
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 93 SLARIDYA---PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQK 144
+L R+D+ V PP H TE++ ++G +V +PE L+ K++QK
Sbjct: 14 TLPRVDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVCL---DPEAPLVQKIIQK 65
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 61/170 (35%), Gaps = 33/170 (19%)
Query: 57 FSFSGLHVAGNTENPL--GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRAT 114
FSFS H N L G VTV ++P L R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNXRL--KPGAIRELHWHKEA- 100
Query: 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174
E I GS V V + + R + +GD++ FP GL H SI AL
Sbjct: 101 EWAYXIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SIQALEE 147
Query: 175 QNPGVITIANAVFGSNPAIA---------ADILAKAFQVDKSVVDQLQTK 215
++ + F N +++A F V K + L K
Sbjct: 148 GAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 129
N LG ++ +T + P L L V L+ +D + PH + +A +L + EG + V
Sbjct: 230 NKLG-KLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELV 288
Query: 130 -----------TSNP-ENRLITKVLQKGDVFVFPIG 153
P E R L + D+FV P G
Sbjct: 289 GIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAG 324
>pdb|3H8U|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
pdb|3H8U|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
Length = 125
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 108 HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162
HVHP + TVI G E + N ++T L+ GD+ + G VH N G
Sbjct: 55 HVHPHGQDTWTVISGEAEY-----HQGNGIVTH-LKAGDIAIAKPGQVHGAXNSG 103
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 129
N G R +T + P L L V ++ +D ++ PH + +A I+ + EG ++ V
Sbjct: 244 NKFG-RWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVINEGEAKIELV 302
Query: 130 -----------TSNPENRLITKVLQKGDVFVFP 151
+ E + L + DVFV P
Sbjct: 303 GLSDQQQQKQQEESLEVQRYRAELSEDDVFVIP 335
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 85 PGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVT-------------- 130
P L L + L ++ +V PH + +A I+ V +G+ + V
Sbjct: 255 PQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEE 314
Query: 131 ---------SNPENRLITKVLQKGDVFVFP 151
SN E R T L++GDVF+ P
Sbjct: 315 EDEDEEEEGSNREVRRYTARLKEGDVFIMP 344
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 68 TENPLGS----RVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGS 123
+ NP+ S + +T + P L L + L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 124 LEVGFV 129
+ V
Sbjct: 281 ANIELV 286
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 129
N G R +T + P L L V ++ +D ++ PH +A I+ + EG ++ V
Sbjct: 245 NKFG-RWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELV 303
Query: 130 -----------TSNPENRLITKVLQKGDVFVFP 151
+ E + L + DVFV P
Sbjct: 304 GLSDQQQQKQQEESLEVQRYRAELSEDDVFVIP 336
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 68 TENPLGS----RVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGS 123
+ NP+ S + +T + P L L + L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 124 LEVGFV 129
+ V
Sbjct: 281 ANIELV 286
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 76 VTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV------ 129
+TP +Q+ L+ L L + + PH + RAT IL EG EV V
Sbjct: 268 ITPEKNSQLRDLDIL---LNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQ 324
Query: 130 ---TSNPENRLITKVLQKGDVFVFP 151
+ + R L +GD+ V P
Sbjct: 325 QQGLESMQLRRYAATLSEGDIIVIP 349
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 68 TENPLGS----RVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGS 123
+ NP+ S + +T + P L L + L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 124 LEVGFV 129
+ V
Sbjct: 281 ANIELV 286
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 129
N LG R +T + P L L + + +D ++ PH + +A IL + EG + V
Sbjct: 240 NKLG-RWFEITPEKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILVINEGKANIELV 298
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 76 VTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV------ 129
+TP +Q+ L+ L L + + PH + RAT IL EG EV V
Sbjct: 28 ITPEKNSQLRDLDIL---LNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQ 84
Query: 130 ---TSNPENRLITKVLQKGDVFVFP 151
+ + R L +GD+ V P
Sbjct: 85 QQGLESMQLRRYAATLSEGDIIVIP 109
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 85 PGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVT-------------- 130
P L L + L ++ ++ PH + +A I+ V +G+ + V
Sbjct: 256 PQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEE 315
Query: 131 ---------SNPENRLITKVLQKGDVFVFP 151
SN E R T L++GDVF+ P
Sbjct: 316 EDEDEEEEGSNREVRRYTARLKEGDVFIMP 345
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 73 GSRVTPVTVAQIPGLNTLGV 92
G+RVTPV A P LNT+GV
Sbjct: 32 GARVTPVAFADPPLLNTVGV 51
>pdb|1E6Y|A Chain A, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|D Chain D, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 569
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 169 ISALSSQNPGVITIANAVFGSNPAIAADILAKAFQVDKSVVDQLQTKF 216
+ L+ PG + + ++PA+ D K F D ++ D++ +F
Sbjct: 146 LEVLNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQF 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,955,041
Number of Sequences: 62578
Number of extensions: 225181
Number of successful extensions: 849
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 53
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)