Query 042226
Match_columns 216
No_of_seqs 300 out of 1757
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 5E-27 1.1E-31 211.7 18.5 159 46-214 203-361 (367)
2 PLN00212 glutelin; Provisional 99.9 3.1E-24 6.7E-29 198.6 18.0 145 66-215 322-468 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 5E-23 1.1E-27 185.8 17.6 151 51-215 32-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 2.3E-22 5E-27 159.1 12.0 127 68-209 9-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 1.7E-20 3.6E-25 148.8 17.5 135 70-209 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 5.9E-19 1.3E-23 163.6 16.7 140 70-214 59-248 (493)
7 COG2140 Thermophilic glucose-6 99.8 2E-18 4.3E-23 143.0 12.7 149 53-215 49-199 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 5.7E-14 1.2E-18 97.0 7.7 70 96-172 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 2.1E-12 4.5E-17 100.3 11.3 85 83-174 34-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.4 3.1E-12 6.8E-17 99.3 11.8 82 90-178 34-115 (127)
11 PRK13290 ectC L-ectoine syntha 99.4 3.4E-12 7.4E-17 99.1 11.7 82 90-180 33-115 (125)
12 PRK04190 glucose-6-phosphate i 99.4 1.8E-11 3.9E-16 101.4 13.6 89 85-175 61-157 (191)
13 COG3837 Uncharacterized conser 99.4 6E-12 1.3E-16 99.8 9.8 93 82-183 34-129 (161)
14 PRK11171 hypothetical protein; 99.2 3.7E-10 8E-15 98.2 14.6 109 48-173 27-136 (266)
15 COG4101 Predicted mannose-6-ph 99.2 1.3E-10 2.7E-15 88.4 9.6 85 91-179 45-129 (142)
16 PRK09943 DNA-binding transcrip 99.2 2.9E-10 6.2E-15 93.4 11.5 76 90-173 105-181 (185)
17 TIGR01479 GMP_PMI mannose-1-ph 99.2 2.2E-10 4.8E-15 106.8 12.1 78 91-175 375-452 (468)
18 PRK15460 cpsB mannose-1-phosph 99.1 3.5E-10 7.7E-15 105.5 11.8 77 90-173 383-459 (478)
19 PF01050 MannoseP_isomer: Mann 99.1 1.1E-09 2.5E-14 87.6 10.5 77 90-173 61-137 (151)
20 TIGR03214 ura-cupin putative a 99.1 1.4E-09 3E-14 94.2 10.6 72 91-170 178-250 (260)
21 TIGR03214 ura-cupin putative a 99.0 4.6E-09 1E-13 91.0 11.7 76 91-173 57-133 (260)
22 PRK11171 hypothetical protein; 99.0 3.4E-09 7.4E-14 92.1 10.4 75 91-173 183-258 (266)
23 PF02041 Auxin_BP: Auxin bindi 99.0 1E-08 2.2E-13 80.9 11.3 98 85-185 39-139 (167)
24 PF06560 GPI: Glucose-6-phosph 98.8 1.3E-07 2.9E-12 77.7 12.0 87 87-175 45-147 (182)
25 PRK13264 3-hydroxyanthranilate 98.8 8.9E-08 1.9E-12 78.1 10.5 73 95-173 37-109 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 9.9E-08 2.2E-12 76.7 9.5 67 100-172 36-102 (159)
27 PF12973 Cupin_7: ChrR Cupin-l 98.5 2.9E-07 6.3E-12 67.2 6.9 81 72-170 8-88 (91)
28 PF02311 AraC_binding: AraC-li 98.5 4E-07 8.6E-12 68.7 7.2 65 101-173 12-76 (136)
29 PF11699 CENP-C_C: Mif2/CENP-C 98.5 2E-06 4.3E-11 62.4 9.2 73 91-171 11-84 (85)
30 TIGR02451 anti_sig_ChrR anti-s 98.4 6.8E-07 1.5E-11 75.5 7.7 73 92-176 127-199 (215)
31 PF03079 ARD: ARD/ARD' family; 98.4 4.2E-06 9.1E-11 67.4 10.1 67 104-173 84-150 (157)
32 PRK15457 ethanolamine utilizat 98.4 6.1E-06 1.3E-10 69.9 11.2 72 89-172 154-225 (233)
33 PRK10371 DNA-binding transcrip 98.3 2.2E-06 4.8E-11 75.5 8.7 61 95-163 29-89 (302)
34 TIGR02272 gentisate_1_2 gentis 98.2 7.4E-06 1.6E-10 73.4 9.4 76 91-173 80-155 (335)
35 COG1791 Uncharacterized conser 98.2 1.8E-05 3.8E-10 64.0 9.6 74 105-182 88-161 (181)
36 PRK10296 DNA-binding transcrip 98.1 1.9E-05 4.1E-10 68.1 9.9 52 102-161 33-84 (278)
37 PF06339 Ectoine_synth: Ectoin 98.1 4.1E-05 8.9E-10 59.0 10.5 85 87-179 30-114 (126)
38 PF05523 FdtA: WxcM-like, C-te 98.1 2E-05 4.3E-10 61.6 8.5 72 99-175 40-112 (131)
39 PRK13500 transcriptional activ 98.1 2E-05 4.3E-10 69.7 8.8 56 100-163 56-111 (312)
40 PRK13501 transcriptional activ 98.0 1.7E-05 3.7E-10 69.0 7.9 56 100-163 26-81 (290)
41 COG4297 Uncharacterized protei 98.0 1.6E-05 3.5E-10 62.1 6.8 64 105-173 56-119 (163)
42 COG3435 Gentisate 1,2-dioxygen 98.0 1.3E-05 2.8E-10 70.2 6.3 95 71-173 67-166 (351)
43 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.1E-05 4.6E-10 67.9 7.4 59 102-167 33-91 (287)
44 PRK13503 transcriptional activ 97.9 2.6E-05 5.6E-10 67.0 6.2 53 101-161 24-76 (278)
45 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.00018 3.9E-09 57.1 10.0 79 94-178 35-113 (151)
46 PF14499 DUF4437: Domain of un 97.9 2.5E-05 5.5E-10 67.3 5.5 74 89-169 33-106 (251)
47 PRK13502 transcriptional activ 97.8 7.6E-05 1.7E-09 64.4 8.4 57 99-163 25-81 (282)
48 PF05899 Cupin_3: Protein of u 97.8 6.9E-05 1.5E-09 52.7 5.5 58 92-158 7-64 (74)
49 COG3257 GlxB Uncharacterized p 97.7 0.00033 7.1E-09 59.0 9.6 76 92-174 61-137 (264)
50 KOG2107 Uncharacterized conser 97.7 0.00012 2.5E-09 59.0 6.1 57 105-164 86-142 (179)
51 TIGR02272 gentisate_1_2 gentis 97.6 0.00029 6.3E-09 63.3 8.4 87 73-171 232-319 (335)
52 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.0037 8E-08 51.1 9.8 70 101-170 54-130 (173)
53 COG4766 EutQ Ethanolamine util 97.2 0.0032 6.8E-08 50.3 8.8 69 91-171 99-167 (176)
54 PF06249 EutQ: Ethanolamine ut 97.1 0.00099 2.1E-08 53.3 5.4 68 92-171 77-144 (152)
55 COG3450 Predicted enzyme of th 97.0 0.0025 5.5E-08 48.8 6.8 60 92-160 45-104 (116)
56 PF05995 CDO_I: Cysteine dioxy 97.0 0.023 5E-07 46.4 12.6 86 91-176 74-166 (175)
57 TIGR01221 rmlC dTDP-4-dehydror 97.0 0.015 3.4E-07 47.6 11.6 79 100-179 52-139 (176)
58 COG3435 Gentisate 1,2-dioxygen 97.0 0.0022 4.9E-08 56.4 6.8 89 72-171 242-331 (351)
59 PF00908 dTDP_sugar_isom: dTDP 96.7 0.021 4.6E-07 46.8 10.2 81 100-180 51-140 (176)
60 PF13621 Cupin_8: Cupin-like d 96.6 0.015 3.2E-07 48.7 8.7 71 94-165 132-236 (251)
61 PF02678 Pirin: Pirin; InterP 95.9 0.055 1.2E-06 40.8 7.6 63 102-170 39-104 (107)
62 PF07385 DUF1498: Protein of u 95.7 0.082 1.8E-06 44.8 8.7 75 97-173 92-187 (225)
63 PF08007 Cupin_4: Cupin superf 95.4 0.21 4.7E-06 44.4 10.9 72 95-168 116-205 (319)
64 COG1741 Pirin-related protein 95.3 0.064 1.4E-06 47.0 7.0 71 96-172 48-122 (276)
65 PF12852 Cupin_6: Cupin 95.2 0.089 1.9E-06 42.7 7.4 44 114-162 36-79 (186)
66 PRK10572 DNA-binding transcrip 95.2 0.076 1.7E-06 45.9 7.4 49 107-163 44-92 (290)
67 PF14499 DUF4437: Domain of un 95.2 0.014 3E-07 50.5 2.6 75 92-173 171-245 (251)
68 TIGR02466 conserved hypothetic 95.2 0.08 1.7E-06 44.3 7.1 81 93-173 97-197 (201)
69 KOG3995 3-hydroxyanthranilate 95.1 0.033 7.1E-07 46.9 4.4 58 99-160 40-97 (279)
70 PF13759 2OG-FeII_Oxy_5: Putat 95.1 0.088 1.9E-06 38.7 6.4 76 97-172 5-100 (101)
71 COG3822 ABC-type sugar transpo 95.1 0.12 2.6E-06 42.9 7.5 78 95-174 89-187 (225)
72 PF04209 HgmA: homogentisate 1 95.1 0.12 2.5E-06 48.0 8.3 57 107-172 140-196 (424)
73 PRK00924 5-keto-4-deoxyuronate 94.9 0.18 3.9E-06 44.2 8.7 82 91-176 174-261 (276)
74 COG3257 GlxB Uncharacterized p 94.8 0.27 5.9E-06 41.7 9.2 86 72-169 166-252 (264)
75 PRK05341 homogentisate 1,2-dio 94.8 0.28 6.2E-06 45.5 10.1 60 105-172 146-205 (438)
76 PLN02658 homogentisate 1,2-dio 94.5 0.41 8.9E-06 44.4 10.3 58 107-172 141-198 (435)
77 PRK12335 tellurite resistance 94.3 0.25 5.5E-06 43.1 8.2 64 100-164 19-84 (287)
78 TIGR01015 hmgA homogentisate 1 93.9 0.57 1.2E-05 43.4 10.1 58 105-171 140-197 (429)
79 PF02373 JmjC: JmjC domain, hy 93.7 0.14 3E-06 37.8 4.8 29 136-164 79-107 (114)
80 PF05118 Asp_Arg_Hydrox: Aspar 93.4 0.48 1E-05 38.1 7.8 71 93-170 81-156 (163)
81 COG5553 Predicted metal-depend 93.4 0.59 1.3E-05 37.9 8.0 77 92-172 73-155 (191)
82 COG3806 ChrR Transcriptional a 93.2 0.24 5.3E-06 41.3 5.7 88 69-173 110-197 (216)
83 PRK09685 DNA-binding transcrip 93.1 0.75 1.6E-05 39.8 9.2 65 92-163 45-114 (302)
84 PF07847 DUF1637: Protein of u 92.8 0.76 1.6E-05 38.5 8.3 95 73-173 30-142 (200)
85 KOG3706 Uncharacterized conser 92.7 0.078 1.7E-06 49.6 2.5 91 71-162 285-405 (629)
86 PRK10579 hypothetical protein; 92.4 1.2 2.5E-05 32.9 7.8 53 112-171 40-92 (94)
87 PF06865 DUF1255: Protein of u 92.3 1.6 3.6E-05 32.1 8.5 65 98-172 29-93 (94)
88 PF05726 Pirin_C: Pirin C-term 92.3 0.83 1.8E-05 33.8 7.2 69 95-173 2-70 (104)
89 PF09313 DUF1971: Domain of un 92.2 1.9 4.2E-05 30.9 8.6 62 103-164 14-76 (82)
90 COG3508 HmgA Homogentisate 1,2 92.0 2.5 5.4E-05 38.4 10.9 72 91-171 124-196 (427)
91 PRK15131 mannose-6-phosphate i 91.4 1.3 2.8E-05 40.8 8.8 58 92-159 321-378 (389)
92 PF14525 AraC_binding_2: AraC- 90.2 4.3 9.3E-05 31.4 9.8 65 92-163 34-98 (172)
93 PF11142 DUF2917: Protein of u 90.1 1.4 3E-05 29.9 5.9 57 97-160 2-58 (63)
94 TIGR00218 manA mannose-6-phosp 89.9 2.2 4.9E-05 37.6 8.8 59 91-159 234-292 (302)
95 PLN02288 mannose-6-phosphate i 89.5 1.1 2.5E-05 41.2 6.8 58 91-154 333-390 (394)
96 KOG2757 Mannose-6-phosphate is 89.2 2.1 4.5E-05 39.0 7.9 74 91-172 332-405 (411)
97 PRK09391 fixK transcriptional 87.5 5.9 0.00013 33.1 9.4 77 91-169 35-111 (230)
98 COG2850 Uncharacterized conser 87.5 0.76 1.6E-05 41.8 4.1 62 99-161 126-202 (383)
99 PF04962 KduI: KduI/IolB famil 87.1 12 0.00026 32.6 11.2 98 74-176 135-247 (261)
100 PRK11753 DNA-binding transcrip 86.9 6.7 0.00014 31.8 9.2 54 95-150 21-74 (211)
101 PF04115 Ureidogly_hydro: Urei 84.8 5.7 0.00012 32.0 7.6 70 105-174 72-146 (165)
102 PRK03606 ureidoglycolate hydro 84.7 7.4 0.00016 31.5 8.2 68 104-171 70-140 (162)
103 PF06172 Cupin_5: Cupin superf 84.4 18 0.00039 28.4 11.0 78 92-172 41-125 (139)
104 PF00027 cNMP_binding: Cyclic 82.9 3.8 8.1E-05 27.9 5.2 48 98-148 3-51 (91)
105 KOG2130 Phosphatidylserine-spe 80.9 2.9 6.2E-05 37.6 4.7 47 135-181 260-306 (407)
106 PRK00924 5-keto-4-deoxyuronate 80.8 12 0.00027 32.8 8.6 52 113-171 73-127 (276)
107 COG3123 Uncharacterized protei 80.7 6.1 0.00013 28.6 5.5 41 113-158 41-81 (94)
108 COG1482 ManA Phosphomannose is 78.6 16 0.00035 32.7 8.8 58 91-158 241-298 (312)
109 PRK13918 CRP/FNR family transc 78.3 9.1 0.0002 30.8 6.7 56 95-151 7-63 (202)
110 smart00100 cNMP Cyclic nucleot 77.4 12 0.00027 26.0 6.6 55 95-151 18-72 (120)
111 PF04622 ERG2_Sigma1R: ERG2 an 76.1 6 0.00013 33.6 5.1 92 103-207 112-205 (216)
112 cd00038 CAP_ED effector domain 75.9 12 0.00025 26.1 6.0 54 95-150 18-71 (115)
113 PHA02984 hypothetical protein; 75.1 22 0.00047 31.2 8.3 54 113-170 91-146 (286)
114 PF04962 KduI: KduI/IolB famil 74.4 38 0.00083 29.4 9.9 68 92-169 27-103 (261)
115 PHA02890 hypothetical protein; 74.2 19 0.0004 31.4 7.6 59 113-177 90-151 (278)
116 PF05984 Cytomega_UL20A: Cytom 74.0 3 6.4E-05 30.1 2.3 21 1-22 1-21 (100)
117 PF07172 GRP: Glycine rich pro 72.6 3.1 6.8E-05 30.7 2.3 11 1-11 1-11 (95)
118 TIGR00218 manA mannose-6-phosp 72.3 2 4.4E-05 37.9 1.4 19 139-157 152-170 (302)
119 PRK10402 DNA-binding transcrip 71.0 14 0.00031 30.6 6.3 53 97-151 34-86 (226)
120 COG1482 ManA Phosphomannose is 70.4 3.8 8.2E-05 36.6 2.7 21 138-158 158-178 (312)
121 PLN02868 acyl-CoA thioesterase 70.3 17 0.00037 33.4 7.1 53 95-150 32-84 (413)
122 COG3717 KduI 5-keto 4-deoxyuro 69.3 27 0.00058 30.2 7.4 85 88-176 173-263 (278)
123 PRK15186 AraC family transcrip 68.4 20 0.00043 31.6 6.8 46 114-165 39-84 (291)
124 PRK13395 ureidoglycolate hydro 67.9 37 0.00079 27.7 7.8 69 105-173 71-143 (171)
125 PRK15131 mannose-6-phosphate i 66.8 6 0.00013 36.4 3.3 22 137-158 236-257 (389)
126 PF13640 2OG-FeII_Oxy_3: 2OG-F 63.5 26 0.00056 24.9 5.6 72 97-168 4-93 (100)
127 PHA00672 hypothetical protein 59.0 69 0.0015 25.1 7.3 73 90-173 45-117 (152)
128 COG0664 Crp cAMP-binding prote 57.4 40 0.00087 26.5 6.3 57 94-152 23-79 (214)
129 PRK11161 fumarate/nitrate redu 56.3 44 0.00094 27.5 6.5 52 97-150 40-91 (235)
130 TIGR03697 NtcA_cyano global ni 51.6 35 0.00077 26.9 5.1 36 113-149 11-46 (193)
131 PF06719 AraC_N: AraC-type tra 50.6 1.1E+02 0.0024 24.0 7.7 52 114-172 24-78 (155)
132 PF04074 DUF386: Domain of unk 48.1 1.1E+02 0.0023 24.0 7.2 68 92-159 46-134 (153)
133 COG2731 EbgC Beta-galactosidas 47.0 71 0.0015 25.6 6.0 59 105-163 61-137 (154)
134 KOG4281 Uncharacterized conser 46.5 9.4 0.0002 32.4 0.9 39 90-128 73-111 (236)
135 COG3718 IolB Uncharacterized e 44.7 2.1E+02 0.0046 24.8 8.8 86 74-163 14-102 (270)
136 PLN02288 mannose-6-phosphate i 44.1 18 0.00038 33.5 2.4 20 139-158 252-271 (394)
137 PRK09392 ftrB transcriptional 43.6 85 0.0018 25.8 6.4 52 96-150 32-83 (236)
138 COG1741 Pirin-related protein 43.2 2.3E+02 0.005 24.9 12.3 42 83-126 165-206 (276)
139 PRK14585 pgaD putative PGA bio 43.2 29 0.00062 27.3 3.1 24 191-214 88-111 (137)
140 PRK10202 ebgC cryptic beta-D-g 42.9 1.7E+02 0.0036 23.1 9.1 54 106-159 58-127 (149)
141 PF13994 PgaD: PgaD-like prote 42.4 31 0.00067 26.8 3.3 22 193-214 101-122 (138)
142 KOG3416 Predicted nucleic acid 42.2 98 0.0021 24.2 5.8 66 84-160 11-80 (134)
143 TIGR00022 uncharacterized prot 41.6 1.6E+02 0.0036 22.7 7.5 55 104-158 60-133 (142)
144 PF10731 Anophelin: Thrombin i 41.1 27 0.00058 23.6 2.3 15 1-15 1-15 (65)
145 PF13348 Y_phosphatase3C: Tyro 41.1 19 0.00041 24.1 1.6 29 184-216 39-67 (68)
146 PRK14584 hmsS hemin storage sy 39.2 37 0.0008 27.3 3.2 24 191-214 97-120 (153)
147 KOG1417 Homogentisate 1,2-diox 38.8 3E+02 0.0064 24.9 9.7 62 105-173 147-208 (446)
148 KOG2132 Uncharacterized conser 38.2 35 0.00075 30.9 3.2 80 81-161 239-349 (355)
149 PLN03192 Voltage-dependent pot 38.1 71 0.0015 32.1 5.8 52 94-148 397-448 (823)
150 KOG2131 Uncharacterized conser 38.1 18 0.00039 33.2 1.5 62 101-164 207-294 (427)
151 PF13464 DUF4115: Domain of un 34.9 1.5E+02 0.0032 20.2 7.4 49 119-169 4-52 (77)
152 PF05721 PhyH: Phytanoyl-CoA d 31.0 1E+02 0.0022 24.1 4.7 28 136-163 178-206 (211)
153 KOG0498 K+-channel ERG and rel 29.7 85 0.0018 31.5 4.7 48 98-148 446-493 (727)
154 PF13384 HTH_23: Homeodomain-l 28.2 69 0.0015 19.6 2.6 24 193-216 18-41 (50)
155 PF05962 HutD: HutD; InterPro 28.2 88 0.0019 25.5 3.9 33 113-152 135-167 (184)
156 PF01987 AIM24: Mitochondrial 28.0 1.3E+02 0.0029 24.6 5.0 43 115-160 131-173 (215)
157 PF02787 CPSase_L_D3: Carbamoy 27.2 58 0.0013 24.9 2.5 24 192-215 72-95 (123)
158 KOG1356 Putative transcription 26.9 23 0.0005 35.7 0.3 25 139-163 800-824 (889)
159 PRK05467 Fe(II)-dependent oxyg 25.6 2E+02 0.0042 24.5 5.6 26 138-163 141-166 (226)
160 PF11131 PhrC_PhrF: Rap-phr ex 24.7 72 0.0016 19.3 2.0 30 3-33 3-32 (37)
161 KOG0501 K+-channel KCNQ [Inorg 24.6 1.1E+02 0.0024 30.2 4.2 50 92-148 569-618 (971)
162 PF15240 Pro-rich: Proline-ric 23.9 66 0.0014 26.5 2.3 15 1-15 1-15 (179)
163 PF14801 GCD14_N: tRNA methylt 23.5 1.8E+02 0.0039 19.2 3.9 31 126-158 12-42 (54)
164 TIGR02408 ectoine_ThpD ectoine 23.3 99 0.0022 26.7 3.5 38 139-176 212-251 (277)
165 PF00325 Crp: Bacterial regula 21.9 65 0.0014 18.8 1.4 23 193-215 3-25 (32)
166 KOG0500 Cyclic nucleotide-gate 21.6 1.7E+02 0.0037 28.1 4.8 49 95-148 331-379 (536)
167 PF01238 PMI_typeI: Phosphoman 21.4 70 0.0015 29.2 2.3 22 139-160 251-272 (373)
168 KOG1633 F-box protein JEMMA an 21.3 93 0.002 31.4 3.2 80 95-175 139-233 (776)
169 cd06919 Asp_decarbox Aspartate 20.2 68 0.0015 24.4 1.6 30 117-152 56-88 (111)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=5e-27 Score=211.70 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=141.2
Q ss_pred cCCCccccCCcccccccCCCCCccCCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEE
Q 042226 46 CMDPKLAQASHFSFSGLHVAGNTENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLE 125 (216)
Q Consensus 46 ck~~~~~~~~dF~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~ 125 (216)
-+.+..-.++.|.|+....++. ...|++++.++..+||++++ +++++++++||++.++|||++++|++||++|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~ 278 (367)
T TIGR03404 203 VTGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQAR 278 (367)
T ss_pred CcCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEE
Confidence 3445566677799998777764 36778899999999999885 7999999999999999999999999999999999
Q ss_pred EEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCceeEeehhhhcCCCCCCHHHHHHHcCCC
Q 042226 126 VGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPAIAADILAKAFQVD 205 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vl~~af~~~ 205 (216)
+++.+++ ++.+++.+++||+++||+|..|+++|.|++++++++++++..++.+.+++| ++. +|.+||+++|+++
T Consensus 279 ~~v~d~~--g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~-l~~---~p~~vl~~~~~~~ 352 (367)
T TIGR03404 279 MTVFAAG--GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQW-LAL---TPPQLVAAHLNLD 352 (367)
T ss_pred EEEEecC--CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHH-Hhh---CCHHHHHHHhCcC
Confidence 9998765 455688999999999999999999999999999999999999999998776 465 9999999999999
Q ss_pred HHHHHHHhh
Q 042226 206 KSVVDQLQT 214 (216)
Q Consensus 206 ~~~v~~l~~ 214 (216)
++++++|++
T Consensus 353 ~~~~~~l~~ 361 (367)
T TIGR03404 353 DEVIDSLKK 361 (367)
T ss_pred HHHHHhccc
Confidence 999999986
No 2
>PLN00212 glutelin; Provisional
Probab=99.92 E-value=3.1e-24 Score=198.63 Aligned_cols=145 Identities=21% Similarity=0.401 Sum_probs=127.0
Q ss_pred CCccCCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCC
Q 042226 66 GNTENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKG 145 (216)
Q Consensus 66 ~~~~~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~G 145 (216)
.++.++.+++++.++..++|+|+++++++.+++|.||++.+||||++++|++||++|+++++++++++ ++++..+|++|
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g-~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG-KTVFNGVLRPG 400 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC-CEEEEEEEcCC
Confidence 34568889999999999999999999999999999999999999999999999999999999998763 78899999999
Q ss_pred cEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCceeEee--hhhhcCCCCCCHHHHHHHcCCCHHHHHHHhhc
Q 042226 146 DVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIA--NAVFGSNPAIAADILAKAFQVDKSVVDQLQTK 215 (216)
Q Consensus 146 Dv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~p~~vl~~af~~~~~~v~~l~~~ 215 (216)
|+++||+|.+|.... +++...+++.-.+.++-...++ .++|++ ||.+||+++|+++.+++++||..
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n 468 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNN 468 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999998755 4566777776655554333333 788997 99999999999999999999875
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=5e-23 Score=185.76 Aligned_cols=151 Identities=25% Similarity=0.323 Sum_probs=125.6
Q ss_pred cccCCcccccccCCCCCccCCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEe
Q 042226 51 LAQASHFSFSGLHVAGNTENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVT 130 (216)
Q Consensus 51 ~~~~~dF~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~ 130 (216)
.+....|.|+.-.++ ...|++++.++..+||++++ +++.++++.||++.++|||. +.|++||++|++++++++
T Consensus 32 ~~p~~~~~~~~~~~~----~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 32 SVPNLKWSFSDSHNR----LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceeeeccccCc----cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEc
Confidence 344444566642222 13578999999999999997 59999999999999999997 789999999999999987
Q ss_pred cCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCC---CceeEeehhhhcCCCCCCHHHHHHHcCCCHH
Q 042226 131 SNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQN---PGVITIANAVFGSNPAIAADILAKAFQVDKS 207 (216)
Q Consensus 131 ~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~lf~~~p~~p~~vl~~af~~~~~ 207 (216)
++ ++.+.+.|++||+++||+|.+|+++|.+ ++++++.++++.. +..+.+.++ |++ +|.+||+++|+++.+
T Consensus 105 ~~--g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~ 177 (367)
T TIGR03404 105 EN--GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPES 177 (367)
T ss_pred CC--CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHH
Confidence 65 6777778999999999999999999995 5688888887654 456666665 677 999999999999999
Q ss_pred HHHHHhhc
Q 042226 208 VVDQLQTK 215 (216)
Q Consensus 208 ~v~~l~~~ 215 (216)
++++|+++
T Consensus 178 ~~~~l~~~ 185 (367)
T TIGR03404 178 AFDNLPLK 185 (367)
T ss_pred HHHhcccc
Confidence 99999874
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.88 E-value=2.3e-22 Score=159.09 Aligned_cols=127 Identities=35% Similarity=0.521 Sum_probs=106.6
Q ss_pred ccCCCCceEEEeeccCCCCCccC-ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCC-----ceEEEE
Q 042226 68 TENPLGSRVTPVTVAQIPGLNTL-GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPEN-----RLITKV 141 (216)
Q Consensus 68 ~~~~~g~~~~~~~~~~~P~l~~~-gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-----~~~~~~ 141 (216)
..+..+++++.++..++|++.+. ++.+.+..+.||++..|||| ++.|++||++|+++++++.++ + +....+
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~--~~~~~~~~~~~~ 85 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPG--GPQEEFRDFSQK 85 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETT--CSSSEEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecC--Cccccceeeece
Confidence 33567889999999999966554 45666677799999999999 799999999999999999874 3 244555
Q ss_pred --ecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCceeEeehhhhcCCCCCCHHHHHHHcCCCHHHH
Q 042226 142 --LQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPAIAADILAKAFQVDKSVV 209 (216)
Q Consensus 142 --L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vl~~af~~~~~~v 209 (216)
+++||++++|+|.+||+.|.++++...+.++.+.++... +|+++++++|+++.+++
T Consensus 86 v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 86 VRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 999999999999999999999888888888888877664 89999999999999876
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=1.7e-20 Score=148.75 Aligned_cols=135 Identities=39% Similarity=0.642 Sum_probs=116.9
Q ss_pred CCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEE
Q 042226 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFV 149 (216)
Q Consensus 70 ~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 149 (216)
+..|++++.++...+|.+++.++.+.+++++||+..++|+|+++.|++||++|++++.+.+.. +++.+...+++||+++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPN-GNKVYDARLREGDVFV 86 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCC-CCeEEEEEecCCCEEE
Confidence 466778999999999999999999999999999999999998789999999999999987642 1345678999999999
Q ss_pred EcCCCeEEEEECCCCcEEEEEEEeCCCCceeEee---hhhhcCCCCCCHHHHHHHcCCCHHHH
Q 042226 150 FPIGLVHFQRNVGHGNAFSISALSSQNPGVITIA---NAVFGSNPAIAADILAKAFQVDKSVV 209 (216)
Q Consensus 150 ~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~---~~lf~~~p~~p~~vl~~af~~~~~~v 209 (216)
||+|..|+..|.+++++++++ +.+++|...... .++|++ +++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 999999999999999999994 666776543222 577887 99999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.81 E-value=5.9e-19 Score=163.59 Aligned_cols=140 Identities=18% Similarity=0.329 Sum_probs=114.4
Q ss_pred CCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCC---Cce---------
Q 042226 70 NPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPE---NRL--------- 137 (216)
Q Consensus 70 ~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~---~~~--------- 137 (216)
...|+.+...+ .+-+.|.+.|+++.|++++|+++.+||+|. +.+++||++|++.++++.++.. .+.
T Consensus 59 ~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~n-a~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYSN-TPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCceeeecC-CCChhhcccceEEEEEEecCCcccCccccC-CCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 45566555555 668999999999999999999999999995 9999999999999999864210 000
Q ss_pred -----------EEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCC--------ceeEee---------------
Q 042226 138 -----------ITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNP--------GVITIA--------------- 183 (216)
Q Consensus 138 -----------~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~p--------g~~~~~--------------- 183 (216)
..+.|++||+++||+|+.||++|.|+++++++++++..++ ..+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~ 216 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE 216 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence 1369999999999999999999999999999988864432 223333
Q ss_pred ----hhhhcCCCCCCHHHHHHHcCCCHHHHHHHhh
Q 042226 184 ----NAVFGSNPAIAADILAKAFQVDKSVVDQLQT 214 (216)
Q Consensus 184 ----~~lf~~~p~~p~~vl~~af~~~~~~v~~l~~ 214 (216)
.++|++ ++.++|+.||+++.++++||+.
T Consensus 217 ~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~ 248 (493)
T PLN00212 217 QHSGQNIFSG---FSTELLSEALGINAQVAKRLQS 248 (493)
T ss_pred ccccCchhhc---CCHHHHHHHHCCCHHHHHHHhc
Confidence 349998 9999999999999999999975
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.78 E-value=2e-18 Score=143.04 Aligned_cols=149 Identities=18% Similarity=0.241 Sum_probs=127.8
Q ss_pred cCCcccccccCCCCCccCCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccE--EEEEEeCeEEEEEEe
Q 042226 53 QASHFSFSGLHVAGNTENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATE--ILTVIEGSLEVGFVT 130 (216)
Q Consensus 53 ~~~dF~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~E--i~yVl~G~~~~~~~~ 130 (216)
..+||+|....+.+.. .++.++......+|+. .-..+.+.||++...||||++.| +.||++|++++.+..
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6789999987664433 3888999999999987 34677899999999999999998 999999999999887
Q ss_pred cCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCceeEeehhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 042226 131 SNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPAIAADILAKAFQVDKSVVD 210 (216)
Q Consensus 131 ~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vl~~af~~~~~~v~ 210 (216)
++ ++.++..+++||+++||++..|+..|+|+++++++.++....+....+..++++ ++..+++..++.+.+.++
T Consensus 121 ~~--G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D 194 (209)
T COG2140 121 PE--GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVD 194 (209)
T ss_pred CC--CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCccccc
Confidence 75 678899999999999999999999999999999999999888877777666554 788899999988887777
Q ss_pred HHhhc
Q 042226 211 QLQTK 215 (216)
Q Consensus 211 ~l~~~ 215 (216)
.++.+
T Consensus 195 ~p~~~ 199 (209)
T COG2140 195 VPRIK 199 (209)
T ss_pred Ccccc
Confidence 66544
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.51 E-value=5.7e-14 Score=96.99 Aligned_cols=70 Identities=29% Similarity=0.451 Sum_probs=63.3
Q ss_pred EEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEE
Q 042226 96 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISAL 172 (216)
Q Consensus 96 ~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 172 (216)
+++++||+..++|+|+...|++||++|++++.+. ++ ...+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~-----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD-----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET-----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc-----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 5789999999999999655999999999999853 33 7899999999999999999999999999999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.42 E-value=2.1e-12 Score=100.30 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=72.7
Q ss_pred CCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECC
Q 042226 83 QIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162 (216)
Q Consensus 83 ~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 162 (216)
..+...+..+.+.++.++||+..++|+||...+.+||++|++++++.+ + .+.+++||++++|+|..|+..|.+
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g-----~--~~~l~~Gd~i~ip~g~~H~~~a~~ 106 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG-----E--KKELKAGDVIIIPPGVVHGLKAVE 106 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC-----C--ceEecCCCEEEECCCCeeeeccCC
Confidence 344445666789999999999999999996689999999999999862 2 689999999999999999999999
Q ss_pred CCcEEEEEEEeC
Q 042226 163 HGNAFSISALSS 174 (216)
Q Consensus 163 ~~~a~~l~~~~s 174 (216)
+++...++++..
T Consensus 107 ~~~~~~l~v~~~ 118 (131)
T COG1917 107 DEPMVLLLVFPL 118 (131)
T ss_pred CCceeEEEEeee
Confidence 887777777655
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.1e-12 Score=99.31 Aligned_cols=82 Identities=28% Similarity=0.264 Sum_probs=72.9
Q ss_pred CceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 90 LGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
...++.++.+.||....+|.|.+.+|++||++|++.+.+.+ + ...|++||++++|+|..|...|.|..++.++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-----~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-----E--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-----E--EEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 45789999999999988888888899999999999999853 3 7899999999999999999999999999999
Q ss_pred EEEeCCCCc
Q 042226 170 SALSSQNPG 178 (216)
Q Consensus 170 ~~~~s~~pg 178 (216)
.+......+
T Consensus 107 ei~~p~~~~ 115 (127)
T COG0662 107 EVQSPPYLG 115 (127)
T ss_pred EEecCCcCC
Confidence 987655443
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.41 E-value=3.4e-12 Score=99.08 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=71.0
Q ss_pred CceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEE-EEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEE
Q 042226 90 LGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVG-FVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFS 168 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~-~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 168 (216)
.++++.+++++||+..+.|+|.. .|+.||++|++++. +.+ ++ ++.|++||++++|++..|.+.|. +++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~----g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT----GE--VHPIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC----CE--EEEeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 46789999999999999999985 79999999999998 532 23 78999999999999999999997 89999
Q ss_pred EEEEeCCCCcee
Q 042226 169 ISALSSQNPGVI 180 (216)
Q Consensus 169 l~~~~s~~pg~~ 180 (216)
+++++.+.+|..
T Consensus 104 l~v~tP~~~~~~ 115 (125)
T PRK13290 104 VCVFNPPLTGRE 115 (125)
T ss_pred EEEECCCCCCcc
Confidence 999986666643
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.36 E-value=1.8e-11 Score=101.42 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCCccCceEEEEEEEcCCcc------cCCccCCCc--cEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeE
Q 042226 85 PGLNTLGVSLARIDYAPWGV------VPPHVHPRA--TEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVH 156 (216)
Q Consensus 85 P~l~~~gvs~~~~~l~pG~~------~ppH~Hp~a--~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H 156 (216)
|..+.-++.+....++||.. .+.|+|++. .|+.||++|++.+.+.+.+ +......+++||+++||+|..|
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE--GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC--CcEEEEEECCCCEEEECCCCcE
Confidence 34556678999999999986 678999854 4999999999999886553 3445789999999999999999
Q ss_pred EEEECCCCcEEEEEEEeCC
Q 042226 157 FQRNVGHGNAFSISALSSQ 175 (216)
Q Consensus 157 ~~~N~g~~~a~~l~~~~s~ 175 (216)
...|.|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999988644
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.35 E-value=6e-12 Score=99.83 Aligned_cols=93 Identities=24% Similarity=0.256 Sum_probs=76.8
Q ss_pred cCCCCCccCceEEEEEEEcCCcc-cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCC--CeEEE
Q 042226 82 AQIPGLNTLGVSLARIDYAPWGV-VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIG--LVHFQ 158 (216)
Q Consensus 82 ~~~P~l~~~gvs~~~~~l~pG~~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G--~~H~~ 158 (216)
..+-||...|+.+. .++||+. ...|||...+|++||++|++++.+.+ . ...|++||++-||+| ..|.+
T Consensus 34 G~~~Gl~~fGvn~~--~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~----~---e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 34 GDALGLKRFGVNLE--IVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG----G---ETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhhcChhhcccceE--EeCCCCccccccccccCceEEEEEcCceEEEECC----e---eEEecCCceeeccCCCcceeEE
Confidence 45667777766555 5799985 79999999999999999999998753 2 689999999999999 99999
Q ss_pred EECCCCcEEEEEEEeCCCCceeEee
Q 042226 159 RNVGHGNAFSISALSSQNPGVITIA 183 (216)
Q Consensus 159 ~N~g~~~a~~l~~~~s~~pg~~~~~ 183 (216)
.|.|+..++++++-+...-....++
T Consensus 105 iN~s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 105 INRSDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred eecCCceEEEEEeccccccceeecC
Confidence 9999999999998765554454554
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.22 E-value=3.7e-10 Score=98.15 Aligned_cols=109 Identities=18% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCccccCCcccccccCCCCCccCCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCC-CccEEEEEEeCeEEE
Q 042226 48 DPKLAQASHFSFSGLHVAGNTENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHP-RATEILTVIEGSLEV 126 (216)
Q Consensus 48 ~~~~~~~~dF~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp-~a~Ei~yVl~G~~~~ 126 (216)
+.+.+++++.+.+.+..- .+..++.+... ..+.++.+.+++++||+....|+|+ ..+|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~------~~~~~~~L~~~----~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGW------ENTRAWVLARP----GLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCC------CCeEEEEEeCC----CCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 456667777777755222 23334444332 2245678999999999887777765 468999999999999
Q ss_pred EEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 127 GFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 127 ~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
.+. ++ ++.|++||.++||++..|.+.|.|+++++++++..
T Consensus 97 ~~~-----g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 97 TLE-----GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 874 33 78999999999999999999999999999998864
No 15
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.3e-10 Score=88.39 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=73.8
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
|+.+-.++++||.....|.|..-+-.+||++|+...++++.- .+..+.++||.+|||+|++|.-.|.+++++..+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rL----E~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRL----EEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccce----eeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 678999999999999999999766679999999999986421 2467889999999999999999999999999999
Q ss_pred EEeCCCCce
Q 042226 171 ALSSQNPGV 179 (216)
Q Consensus 171 ~~~s~~pg~ 179 (216)
+.+..++..
T Consensus 121 aRsDp~~~E 129 (142)
T COG4101 121 ARSDPNPQE 129 (142)
T ss_pred EccCCCCCc
Confidence 988776653
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.18 E-value=2.9e-10 Score=93.40 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=64.9
Q ss_pred CceEEEEEEEcCCccc-CCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEE
Q 042226 90 LGVSLARIDYAPWGVV-PPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFS 168 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 168 (216)
..+.+.+.+++||+.. +.|+|+ +.|++||++|++.+.+.+ + .+.|++||+++||++.+|.+.|.+++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~-----~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTING-----Q--DYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECC-----E--EEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 3456777789999864 567787 699999999999998843 3 789999999999999999999999999999
Q ss_pred EEEEe
Q 042226 169 ISALS 173 (216)
Q Consensus 169 l~~~~ 173 (216)
+.+..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 98764
No 17
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.18 E-value=2.2e-10 Score=106.76 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=70.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
++.+.+++++||+..+.|+|++..|.+||++|++++.+.+ + ++.|++||+++||+|.+|.+.|.|++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg-----~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD-----E--TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC-----E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 5688999999999889999988899999999999998843 3 78999999999999999999999999999999
Q ss_pred EEeCC
Q 042226 171 ALSSQ 175 (216)
Q Consensus 171 ~~~s~ 175 (216)
+...+
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 97643
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.15 E-value=3.5e-10 Score=105.55 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=69.5
Q ss_pred CceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 90 LGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
.++.+.+++++||+....|+|...+|..||++|++++.+.+ + ++.|++||+++||+|.+|.+.|.|+++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-----~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-----D--IKLLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-----E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 35788999999999887888877889999999999999853 3 7899999999999999999999999999999
Q ss_pred EEEe
Q 042226 170 SALS 173 (216)
Q Consensus 170 ~~~~ 173 (216)
++..
T Consensus 456 ~V~~ 459 (478)
T PRK15460 456 EVRS 459 (478)
T ss_pred EEEc
Confidence 9874
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.08 E-value=1.1e-09 Score=87.57 Aligned_cols=77 Identities=26% Similarity=0.300 Sum_probs=69.9
Q ss_pred CceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 90 LGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
-+..+.++++.||....+|.|.+..|..+|++|++.+.+.+ + .+.+++||++++|+|..|.+.|.|+.++.++
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-----~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~I 133 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-----E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEII 133 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-----E--EEEEcCCCEEEECCCCEEEEECCCCcCcEEE
Confidence 35778999999999999999998899999999999998843 3 7899999999999999999999999999999
Q ss_pred EEEe
Q 042226 170 SALS 173 (216)
Q Consensus 170 ~~~~ 173 (216)
-+-.
T Consensus 134 EVq~ 137 (151)
T PF01050_consen 134 EVQT 137 (151)
T ss_pred EEec
Confidence 8754
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.05 E-value=1.4e-09 Score=94.24 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=63.0
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 91 GVSLARIDYAPWGVVPP-HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 91 gvs~~~~~l~pG~~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
.+.+.+++++||+..+. |.|. .+|.+||++|++.+.+. ++ ...+++||++++|++++|++.|.|+++++++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~-----g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLD-----NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEEC-----CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 56788899999999986 5555 68889999999999874 33 7899999999999999999999999999988
Q ss_pred E
Q 042226 170 S 170 (216)
Q Consensus 170 ~ 170 (216)
.
T Consensus 250 ~ 250 (260)
T TIGR03214 250 L 250 (260)
T ss_pred E
Confidence 5
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.00 E-value=4.6e-09 Score=91.03 Aligned_cols=76 Identities=18% Similarity=0.082 Sum_probs=65.4
Q ss_pred ceEEEEEEEcCCccc-CCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 91 GVSLARIDYAPWGVV-PPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 91 gvs~~~~~l~pG~~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
.+.+.+++++||+.. .+|+|+..+|++||++|++++.+.+ + ++.|++||.+++|+|..|.+.|.++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g-----~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l 129 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEG-----E--THELREGGYAYLPPGSKWTLANAQAEDARFF 129 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECC-----E--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 578899999998754 4566775589999999999998743 3 6899999999999999999999999999999
Q ss_pred EEEe
Q 042226 170 SALS 173 (216)
Q Consensus 170 ~~~~ 173 (216)
.+..
T Consensus 130 ~v~k 133 (260)
T TIGR03214 130 LYKK 133 (260)
T ss_pred EEEe
Confidence 8764
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.99 E-value=3.4e-09 Score=92.09 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=65.4
Q ss_pred ceEEEEEEEcCCcccCCc-cCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 91 GVSLARIDYAPWGVVPPH-VHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH-~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
.+.+.+++++||+..+.| +|. .+|.+||++|++++.+. ++ .+.|++||+++|+++..|++.|.|+++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~-----~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLN-----ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEEC-----CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 357899999999998885 565 78999999999999874 33 7899999999999999999999999999998
Q ss_pred EEEe
Q 042226 170 SALS 173 (216)
Q Consensus 170 ~~~~ 173 (216)
..=+
T Consensus 255 ~~k~ 258 (266)
T PRK11171 255 LYKD 258 (266)
T ss_pred EEcc
Confidence 6543
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.96 E-value=1e-08 Score=80.91 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=59.6
Q ss_pred CCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCC--CCceEEEEecCCcEEEEcCCCeEEEEECC
Q 042226 85 PGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNP--ENRLITKVLQKGDVFVFPIGLVHFQRNVG 162 (216)
Q Consensus 85 P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~--~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 162 (216)
-|++. +.+..-++.||...|+|.|. .+|+++|++|+++..+..... .++..++.+.+++.++||.+..|...|++
T Consensus 39 hGmke--vEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMKE--VEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--SS--EEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCcee--eeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 34443 57888899999999999999 899999999999998875430 14556889999999999999999999999
Q ss_pred -CCcEEEEEEEeCCCCceeEeehh
Q 042226 163 -HGNAFSISALSSQNPGVITIANA 185 (216)
Q Consensus 163 -~~~a~~l~~~~s~~pg~~~~~~~ 185 (216)
.+++.++++.+..--..+.+.+|
T Consensus 116 e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 116 EHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp SSS-EEEEEEEESSS--EEEESST
T ss_pred CCcceEEEEEecCCCeEEEEeccc
Confidence 48999998876544444455444
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.77 E-value=1.3e-07 Score=77.73 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=57.9
Q ss_pred CccCceEEEEEEEcCCcc------cCCccCCC------ccEEEEEEeCeEEEEEEecCCCC----ceEEEEecCCcEEEE
Q 042226 87 LNTLGVSLARIDYAPWGV------VPPHVHPR------ATEILTVIEGSLEVGFVTSNPEN----RLITKVLQKGDVFVF 150 (216)
Q Consensus 87 l~~~gvs~~~~~l~pG~~------~ppH~Hp~------a~Ei~yVl~G~~~~~~~~~~~~~----~~~~~~L~~GDv~~~ 150 (216)
+...++......+.||.+ ..=|+|+. -.|+.+|++|++.+.+-+.+ + +.+...+++||+++|
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~--~~~~~~~~~v~~~~G~~v~I 122 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE--GDDVGDVIAVEAKPGDVVYI 122 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT--S-----EEEEEE-TTEEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC--CCcceeEEEEEeCCCCEEEE
Confidence 444567888888999854 46699997 78999999999999887764 4 567789999999999
Q ss_pred cCCCeEEEEECCCCcEEEEEEEeCC
Q 042226 151 PIGLVHFQRNVGHGNAFSISALSSQ 175 (216)
Q Consensus 151 P~G~~H~~~N~g~~~a~~l~~~~s~ 175 (216)
|++..|...|+|++++++.....+.
T Consensus 123 Pp~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 123 PPGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp -TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred CCCceEEEEECCCCcEEEEEEEecC
Confidence 9999999999999999999888643
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.76 E-value=8.9e-08 Score=78.11 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=58.0
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
+.+.=.||.....|+|+ ++|++|+++|++.+.+.+. ++.....|++||++++|+|++|..... +..+.+.+=.
T Consensus 37 VmvvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~LviE~ 109 (177)
T PRK13264 37 VMVVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED---GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVIER 109 (177)
T ss_pred EEEEccCCcccccccCC-CceEEEEECCeEEEEEEcC---CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEEEe
Confidence 33434778888999999 7999999999999999864 454578999999999999999998663 4455555433
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.72 E-value=9.9e-08 Score=76.68 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=54.2
Q ss_pred cCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEE
Q 042226 100 APWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISAL 172 (216)
Q Consensus 100 ~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 172 (216)
.||....+|.|+ ++|++|+++|++.+.+.+. ++.....|++||++++|+|++|.....+ ..+.+.+=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~flvP~gvpHsP~r~~--~t~~LvIE 102 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE---GKREDVPIREGDIFLLPPHVPHSPQRPA--GSIGLVIE 102 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC---CcEEEEEECCCCEEEeCCCCCcccccCC--CcEEEEEE
Confidence 666677899998 7999999999999998764 4555789999999999999999987743 34444443
No 27
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.54 E-value=2.9e-07 Score=67.17 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=59.1
Q ss_pred CCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEc
Q 042226 72 LGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFP 151 (216)
Q Consensus 72 ~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 151 (216)
.|.++..+.... ...|..+..+.++||+..|.|.|+ +.|.+||++|++.. . + ..+.+||.++.|
T Consensus 8 ~Gv~~~~L~~~~----~~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~---~----~~~~~G~~~~~p 71 (91)
T PF12973_consen 8 PGVSVKPLHRDE----GETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G---D----GRYGAGDWLRLP 71 (91)
T ss_dssp TTEEEEEEEECS----SSTTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T---T----CEEETTEEEEE-
T ss_pred CCEEEEEeccCC----CcccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C---C----ccCCCCeEEEeC
Confidence 455555554322 123567888999999999999999 68888999999985 1 2 257999999999
Q ss_pred CCCeEEEEECCCCcEEEEE
Q 042226 152 IGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 152 ~G~~H~~~N~g~~~a~~l~ 170 (216)
+|..|.... ++.+.++.
T Consensus 72 ~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 72 PGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TTEEEEEEE--SSCEEEEE
T ss_pred CCCccccCc--CCCEEEEE
Confidence 999999884 56676664
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.51 E-value=4e-07 Score=68.72 Aligned_cols=65 Identities=25% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 101 PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 101 pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
++...++|+|+ .-|+.||++|++++.+. ++ .+.+++||++++|+|.+|.....++++...+.+.-
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~-----~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHID-----GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEET-----TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEEC-----CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 45567899999 79999999999999774 33 78999999999999999999888876777766653
No 29
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.45 E-value=2e-06 Score=62.41 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=54.1
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 91 GVSLARIDYAPWGVVPP-HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 91 gvs~~~~~l~pG~~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
.++...++|+||+.-++ +.+. ..-++||++|.+++.+.+ . +..+.+|+++.||+|-.-.+.|.++++++++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~-----~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHE-----T--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETT-----E--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcC-----c--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 45788999999987544 5554 677899999999999943 2 7899999999999999999999999999987
Q ss_pred EE
Q 042226 170 SA 171 (216)
Q Consensus 170 ~~ 171 (216)
-+
T Consensus 83 F~ 84 (85)
T PF11699_consen 83 FV 84 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.44 E-value=6.8e-07 Score=75.48 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=63.1
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
..+..+.++||+..|.|.|. +.|+.+|++|++. ++ ...+.+||++..|.|..|...+.++++++.+++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-------~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-------TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-------CCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 46678889999999999997 7999999999953 32 237899999999999999999999999999999
Q ss_pred EeCCC
Q 042226 172 LSSQN 176 (216)
Q Consensus 172 ~~s~~ 176 (216)
.+..-
T Consensus 195 ~dapl 199 (215)
T TIGR02451 195 LDAPL 199 (215)
T ss_pred ecCCc
Confidence 87543
No 31
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.36 E-value=4.2e-06 Score=67.42 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=50.1
Q ss_pred ccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 104 VVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 104 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
....|.|. ..|+-|+++|++.+.+...+ ++.....+++||.+++|+|+.|++.-..+...+++=.|.
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~--~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGD--DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TT--CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCC--CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 35789999 69999999999999998764 555558899999999999999999866666777766664
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.35 E-value=6.1e-06 Score=69.91 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=52.6
Q ss_pred cCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEE
Q 042226 89 TLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFS 168 (216)
Q Consensus 89 ~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 168 (216)
+-.|+...+.+.. . ..+||-...|+.||++|++++.+. ++ ++.+++||+++||+|..|.+...+ .+++
T Consensus 154 ~s~m~aGf~~~~~-~--sf~wtl~~dEi~YVLEGe~~l~Id-----G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRf 221 (233)
T PRK15457 154 GSSMAAGFMQWEN-A--FFPWTLNYDEIDMVLEGELHVRHE-----GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRF 221 (233)
T ss_pred CCceeeEEEEEec-C--ccceeccceEEEEEEEeEEEEEEC-----CE--EEEeCCCcEEEECCCCeEEecCCC--CeeE
Confidence 3345666666665 2 344666679999999999999984 33 789999999999999995554443 5666
Q ss_pred EEEE
Q 042226 169 ISAL 172 (216)
Q Consensus 169 l~~~ 172 (216)
+.+.
T Consensus 222 lyV~ 225 (233)
T PRK15457 222 LYVA 225 (233)
T ss_pred EEEE
Confidence 6554
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.33 E-value=2.2e-06 Score=75.54 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=50.5
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
+...-.|..+.++|||. .-|+.|+++|++.+.+. ++ ...+++||++++++|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~-----g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLIN-----NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEEC-----CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 33445677889999999 69999999999998774 33 7899999999999999998765544
No 34
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.22 E-value=7.4e-06 Score=73.39 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=64.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
.+....-.+.||...++|.|. +.-+.+|++|++.+..++ ++ +...++||+++.|.+..|...|.|++++..+.
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~----g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld 152 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD----GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLD 152 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC----CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEe
Confidence 345556678999999999999 789999999999655554 33 78999999999999999999999999988876
Q ss_pred EEe
Q 042226 171 ALS 173 (216)
Q Consensus 171 ~~~ 173 (216)
.++
T Consensus 153 ~lD 155 (335)
T TIGR02272 153 GLD 155 (335)
T ss_pred cCC
Confidence 664
No 35
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.17 E-value=1.8e-05 Score=64.00 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=61.0
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCceeEe
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVITI 182 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~ 182 (216)
..-|.|. ..|+.|++.|++.+.+...+ ++++...+.+||.+.+|+|+-||+.-..+...+.+=.|. ..+|.+-+
T Consensus 88 ~~EH~H~-d~EvRy~vaG~GiF~v~~~d--~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa~ 161 (181)
T COG1791 88 LQEHLHT-DDEVRYFVAGEGIFDVHSPD--GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVAI 161 (181)
T ss_pred HHHhccC-CceEEEEEecceEEEEECCC--CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCceee
Confidence 3669999 79999999999999998764 688899999999999999999999777666777766664 45565433
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.13 E-value=1.9e-05 Score=68.15 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=44.2
Q ss_pred CcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEEC
Q 042226 102 WGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNV 161 (216)
Q Consensus 102 G~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 161 (216)
+...++|||. ..|++||++|++.+.+. ++ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN-----GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC-----CE--EEEECCCcEEEeCCCCccceeee
Confidence 3456899998 79999999999999884 33 68999999999999999976544
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.13 E-value=4.1e-05 Score=59.00 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=73.5
Q ss_pred CccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcE
Q 042226 87 LNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNA 166 (216)
Q Consensus 87 l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a 166 (216)
-.++|+|+-...+.+|.....|+-. --|-+|+++|++++...+. ++ .+.+++|.+....+.-.|...... ++
T Consensus 30 ~DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~---G~--~~~i~pGt~YaLd~hD~H~lra~~--dm 101 (126)
T PF06339_consen 30 DDGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT---GE--VHPIKPGTMYALDKHDRHYLRAKT--DM 101 (126)
T ss_pred cCCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC---Cc--EEEcCCCeEEecCCCccEEEEecC--CE
Confidence 4578999999999999999999887 5999999999999987654 44 789999999999999999997654 99
Q ss_pred EEEEEEeCCCCce
Q 042226 167 FSISALSSQNPGV 179 (216)
Q Consensus 167 ~~l~~~~s~~pg~ 179 (216)
+++++||.+--|.
T Consensus 102 ~~vCVFnPpltG~ 114 (126)
T PF06339_consen 102 RLVCVFNPPLTGR 114 (126)
T ss_pred EEEEEcCCCCcCc
Confidence 9999998765543
No 38
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.10 E-value=2e-05 Score=61.59 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=44.4
Q ss_pred EcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCC-cEEEEcCCCeEEEEECCCCcEEEEEEEeCC
Q 042226 99 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKG-DVFVFPIGLVHFQRNVGHGNAFSISALSSQ 175 (216)
Q Consensus 99 l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~G-Dv~~~P~G~~H~~~N~g~~~a~~l~~~~s~ 175 (216)
.++|....+|+|....|+++|++|+..+.+.+. .+..+..|... ..+++|+|.+|.+.|.+++ +++++ +.+.
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~---~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDG---REEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-S---S-EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEE-EESS
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecC---CCcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEE-EcCC
Confidence 455556899999999999999999999998664 23356777555 5999999999999999877 66665 4444
No 39
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.06 E-value=2e-05 Score=69.66 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=47.0
Q ss_pred cCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 100 APWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 100 ~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
.|....++|||+ ..|++||++|++.+.+.+ + ...+++||+++||+|..|......+
T Consensus 56 ~~~~~~~~H~H~-~~el~~v~~G~g~~~v~~-----~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHD-FCELVIVWRGNGLHVLND-----R--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccc-eEEEEEEEcCeEEEEECC-----E--EEeecCCeEEEECCCCeecccccCC
Confidence 344457899999 799999999999998743 3 7899999999999999999876544
No 40
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.04 E-value=1.7e-05 Score=68.98 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=46.6
Q ss_pred cCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 100 APWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 100 ~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
.+....++|||+ ..|++||++|++++.+. ++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~-----~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVLN-----DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEEC-----Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 344457799998 69999999999999874 33 7899999999999999999875443
No 41
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.04 E-value=1.6e-05 Score=62.12 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=52.1
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
.--|+|..+.|++.|++|+..+.+.+.. +. +..+++||++++|+|+-|.- +....+..++..+.
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~--G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGAD--GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCC--Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 4568999999999999999999998875 44 67999999999999999985 44455566666553
No 42
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.00 E-value=1.3e-05 Score=70.16 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=75.7
Q ss_pred CCCceEEEeeccCCCCCccCc-----eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCC
Q 042226 71 PLGSRVTPVTVAQIPGLNTLG-----VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKG 145 (216)
Q Consensus 71 ~~g~~~~~~~~~~~P~l~~~g-----vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~G 145 (216)
..++ ++.+-.-+-|+|++.. +....--|.||-..|.|.|. .+-+-+|++|++-+.+++. + ...+++|
T Consensus 67 ~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG----e--r~~M~~G 138 (351)
T COG3435 67 AREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG----E--RTPMEAG 138 (351)
T ss_pred cccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeecC----c--eeeccCC
Confidence 3344 3444455668887763 12333457999999999999 7899999999998888864 2 5789999
Q ss_pred cEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 146 DVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 146 Dv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
|.+..|++..|..-|.|.+|++++-.++
T Consensus 139 DfilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 139 DFILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred CEEEccCceeccCCCCCCCceEEEcccc
Confidence 9999999999999999999999998775
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.98 E-value=2.1e-05 Score=67.90 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=47.8
Q ss_pred CcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEE
Q 042226 102 WGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAF 167 (216)
Q Consensus 102 G~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~ 167 (216)
+...++|||.+.-|++|+++|++.+.+. ++ ...+++||++++|+|..|.....++....
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~-----~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~ 91 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD-----EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGH 91 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC-----CE--EEEecCCeEEEeCCCCccccccCCCcceE
Confidence 3468999998558999999999998774 33 68999999999999999998765544333
No 44
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.89 E-value=2.6e-05 Score=67.02 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=45.4
Q ss_pred CCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEEC
Q 042226 101 PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNV 161 (216)
Q Consensus 101 pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 161 (216)
+....++|||. ..|++||++|++++.+.+ + ...+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~-----~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNG-----Q--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecC-----C--cccccCCcEEEECCCccchhhhc
Confidence 34567899998 799999999999998853 2 67999999999999999987654
No 45
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.87 E-value=0.00018 Score=57.11 Aligned_cols=79 Identities=13% Similarity=0.297 Sum_probs=51.6
Q ss_pred EEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 94 LARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 94 ~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
.+.+.=.|+...-.|.-+ ++|++|-++|...+.+.+. ++.....+++||++..|++++|+-+-.. ..+-+++-.
T Consensus 35 ~VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~---g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr 108 (151)
T PF06052_consen 35 IVMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED---GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIER 108 (151)
T ss_dssp EEEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET---TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE
T ss_pred EEEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC---CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEe
Confidence 344556788888999999 8999999999999999875 5777899999999999999999987764 444555544
Q ss_pred CCCCc
Q 042226 174 SQNPG 178 (216)
Q Consensus 174 s~~pg 178 (216)
...+|
T Consensus 109 ~R~~~ 113 (151)
T PF06052_consen 109 KRPEG 113 (151)
T ss_dssp ---TT
T ss_pred ccCCC
Confidence 44433
No 46
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.86 E-value=2.5e-05 Score=67.30 Aligned_cols=74 Identities=30% Similarity=0.363 Sum_probs=47.5
Q ss_pred cCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEE
Q 042226 89 TLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFS 168 (216)
Q Consensus 89 ~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 168 (216)
.-|-+..++.+++|-..|||+|. +++-+||++|++..+ + .+....-|.+|..+..|+|..|.....+++.+.+
T Consensus 33 ~~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~ 105 (251)
T PF14499_consen 33 KDGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLF 105 (251)
T ss_dssp TTS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEE
T ss_pred cCCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C----CcccceecCCCceEeccCCCceeeeccCccEEEE
Confidence 34678899999999999999999 799999999987763 1 2223467999999999999999986666555544
Q ss_pred E
Q 042226 169 I 169 (216)
Q Consensus 169 l 169 (216)
+
T Consensus 106 ~ 106 (251)
T PF14499_consen 106 I 106 (251)
T ss_dssp E
T ss_pred E
Confidence 4
No 47
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.84 E-value=7.6e-05 Score=64.44 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=47.2
Q ss_pred EcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 99 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 99 l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
..|+...++|||. .-|++||.+|++++.+. ++ ...+++||++++|+|.+|.....++
T Consensus 25 ~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~-----~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 25 RYPQDVFAEHTHE-FCELVMVWRGNGLHVLN-----ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCCccccc-eEEEEEEecCcEEEEEC-----CE--EEeecCCcEEEECCCCcccccccCC
Confidence 3455557899998 79999999999999874 33 7899999999999999998865443
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.75 E-value=6.9e-05 Score=52.73 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=42.8
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 158 (216)
++....+..||. ...++. ..|++||++|++++...+ ++ ..++++||++++|+|..-.+
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~~----G~--~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDED----GE--TVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEETT----TE--EEEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEECC----CC--EEEEcCCcEEEECCCCEEEE
Confidence 456666778865 334444 499999999999997632 33 78999999999999986554
No 49
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.71 E-value=0.00033 Score=58.95 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=63.9
Q ss_pred eEEEEEEEcCCc-ccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 92 VSLARIDYAPWG-VVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 92 vs~~~~~l~pG~-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
++-..+++.|+| .-.+-.-++++-++||++|++.+.+. ++ ++.|++|+..++|+|..|...|...+++++..
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~-----G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw 133 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE-----GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHW 133 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc-----Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEE
Confidence 345667887876 66777777788899999999999885 34 78999999999999999999999999999987
Q ss_pred EEeC
Q 042226 171 ALSS 174 (216)
Q Consensus 171 ~~~s 174 (216)
+...
T Consensus 134 ~rk~ 137 (264)
T COG3257 134 IRKR 137 (264)
T ss_pred Eeec
Confidence 7653
No 50
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.66 E-value=0.00012 Score=58.96 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=49.6
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCC
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHG 164 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 164 (216)
...|.|+ .+||-||++|++.+-+-+.+ ++.+..-+++||.+++|+|+-|.+.-..+.
T Consensus 86 fEEhlh~-deeiR~il~GtgYfDVrd~d--d~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHE-DEEIRYILEGTGYFDVRDKD--DQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCc-hhheEEEeecceEEeeccCC--CCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 4789999 59999999999999988775 677788899999999999999998665444
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.60 E-value=0.00029 Score=63.26 Aligned_cols=87 Identities=18% Similarity=0.070 Sum_probs=64.4
Q ss_pred CceEEEeeccCCCC-CccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEc
Q 042226 73 GSRVTPVTVAQIPG-LNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFP 151 (216)
Q Consensus 73 g~~~~~~~~~~~P~-l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 151 (216)
|..+..+|..+=+. ..+++..+ ..+++|....+|.|. .+.+++|++|+++..+.+ + +...++||+|++|
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~-----~--~~~W~~gD~f~vP 301 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIGD-----A--VFRFSPKDVFVVP 301 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEECC-----E--EEEecCCCEEEEC
Confidence 44566666544443 35555444 347888899999998 799999999999998843 3 6899999999999
Q ss_pred CCCeEEEEECCCCcEEEEEE
Q 042226 152 IGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 152 ~G~~H~~~N~g~~~a~~l~~ 171 (216)
....|...|. +++.++.+
T Consensus 302 sW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 302 SWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCCcEecccC--CCeEEEEe
Confidence 9988877664 45555543
No 52
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.0037 Score=51.12 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=55.7
Q ss_pred CCcccCCccCCCc-cEEEEEEeCeEEEEEEecCCC----CceEEEEecCC--cEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 101 PWGVVPPHVHPRA-TEILTVIEGSLEVGFVTSNPE----NRLITKVLQKG--DVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 101 pG~~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~----~~~~~~~L~~G--Dv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
||-+..+|+|..- .+++.|++|++....++-..+ ++....++.+- ..++||+|..|.+++.+++...++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8889999999977 899999999999888774321 23455677655 8999999999999999988744443
No 53
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0032 Score=50.26 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=50.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
.+++...++++ ...|+-. +-.|+-||+||++.+.+.+ + +..-++||++++|+|.---+.-.|. ++++.
T Consensus 99 ~l~aG~m~~~~-~tf~wtl--~yDe~d~VlEGrL~V~~~g-----~--tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTL--NYDEIDYVLEGRLHVRIDG-----R--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred ccccceeeecc-ccCccee--cccceeEEEeeeEEEEEcC-----C--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 35566667777 4444443 3589999999999998743 3 6788999999999998877655554 66554
Q ss_pred E
Q 042226 171 A 171 (216)
Q Consensus 171 ~ 171 (216)
+
T Consensus 167 v 167 (176)
T COG4766 167 V 167 (176)
T ss_pred E
Confidence 3
No 54
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.12 E-value=0.00099 Score=53.35 Aligned_cols=68 Identities=22% Similarity=0.173 Sum_probs=45.4
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
++...++++.. +.-|.-.-.|+.||++|++.+... ++ +...++||+++||+|.--.+... ..++++.+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~-----G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID-----GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET-----TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC-----CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 45666667653 345676679999999999998752 44 78999999999999987665433 23454443
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.04 E-value=0.0025 Score=48.76 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=46.8
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRN 160 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 160 (216)
+.....+-.||. .|++-...|+.++|+|+.++.-.+ ++ ...+++||+++||+|..=.+.-
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~----Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDG----GE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCC----Ce--EEEEcCCCEEEECCCCeEEEEE
Confidence 566667777774 667766799999999999986422 44 6899999999999998765544
No 56
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.00 E-value=0.023 Score=46.41 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=57.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCC--Cc----eEEEEecCCcEEEEcCCCeEEEEECC-C
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPE--NR----LITKVLQKGDVFVFPIGLVHFQRNVG-H 163 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~--~~----~~~~~L~~GDv~~~P~G~~H~~~N~g-~ 163 (216)
.+++..+...||...+.|=|..+.=++.|++|+++-......++ .. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 35778888999999999999966668889999988765443211 01 12345678888888999999999987 8
Q ss_pred CcEEEEEEEeCCC
Q 042226 164 GNAFSISALSSQN 176 (216)
Q Consensus 164 ~~a~~l~~~~s~~ 176 (216)
++++-+=+++.+-
T Consensus 154 ~~avSLHvYspPl 166 (175)
T PF05995_consen 154 EPAVSLHVYSPPL 166 (175)
T ss_dssp S-EEEEEEEES--
T ss_pred CCEEEEEEcCCCh
Confidence 8888887886543
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.00 E-value=0.015 Score=47.63 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=58.1
Q ss_pred cCCcccCCccCC--CccEEEEEEeCeEEEEEEecCCC----CceEEEEecC--CcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 100 APWGVVPPHVHP--RATEILTVIEGSLEVGFVTSNPE----NRLITKVLQK--GDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 100 ~pG~~~ppH~Hp--~a~Ei~yVl~G~~~~~~~~~~~~----~~~~~~~L~~--GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
.+|.+..+|.|. ....+++|++|++...++|-..+ ++.....|.+ +..++||+|..|.+...+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 36899999999999988875321 4555677877 66999999999999998866 444433
Q ss_pred Ee-CCCCce
Q 042226 172 LS-SQNPGV 179 (216)
Q Consensus 172 ~~-s~~pg~ 179 (216)
.+ .-+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 33 224543
No 58
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.99 E-value=0.0022 Score=56.41 Aligned_cols=89 Identities=24% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCceEEEeeccCCC-CCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 72 LGSRVTPVTVAQIP-GLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 72 ~g~~~~~~~~~~~P-~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
.|..++.+|..+=- ...++|-.+. -++||-...+|.|- .+-+.-|++|+++..+.+ + ++..++||+|++
T Consensus 242 dG~~~ryvNP~TGg~~mptI~a~mq--lL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig~-----~--rf~~~~~D~fvV 311 (351)
T COG3435 242 DGYKMRYVNPVTGGYAMPTIGAFMQ--LLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIGG-----E--RFDWSAGDIFVV 311 (351)
T ss_pred CcceEEEecCCCCCCcCchHHHHHH--hcCCcccCCceecc-CCEEEEEEecceeEEECC-----E--EeeccCCCEEEc
Confidence 45666666543311 1122222232 36888889999998 578888999999998853 3 789999999999
Q ss_pred cCCCeEEEEECCCCcEEEEEE
Q 042226 151 PIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 151 P~G~~H~~~N~g~~~a~~l~~ 171 (216)
|.-..|...|. .+++++++.
T Consensus 312 PsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 312 PSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred cCcceeecccC-CcceEEEec
Confidence 99999999885 677777764
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.71 E-value=0.021 Score=46.82 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=56.0
Q ss_pred cCCcccCCccCCCc---cEEEEEEeCeEEEEEEecCCC----CceEEEEecCCc--EEEEcCCCeEEEEECCCCcEEEEE
Q 042226 100 APWGVVPPHVHPRA---TEILTVIEGSLEVGFVTSNPE----NRLITKVLQKGD--VFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 100 ~pG~~~ppH~Hp~a---~Ei~yVl~G~~~~~~~~~~~~----~~~~~~~L~~GD--v~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
.+|.+..+|+|... ..++.|++|++...++|-..+ ++.....|.+++ .++||+|+.|.+...+++..+.+-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 44888999999854 689999999999888873211 456778887775 799999999999999777444443
Q ss_pred EEeCCCCcee
Q 042226 171 ALSSQNPGVI 180 (216)
Q Consensus 171 ~~~s~~pg~~ 180 (216)
+-+.-+|+..
T Consensus 131 ~t~~y~p~~e 140 (176)
T PF00908_consen 131 VTNYYDPEDE 140 (176)
T ss_dssp ESS---GGGE
T ss_pred cCCccCcccc
Confidence 3223345433
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.57 E-value=0.015 Score=48.68 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=49.1
Q ss_pred EEEEEEcC-CcccCCccCCCccEEEEEEeCeEEEEEEecCC---------------------------------CCceEE
Q 042226 94 LARIDYAP-WGVVPPHVHPRATEILTVIEGSLEVGFVTSNP---------------------------------ENRLIT 139 (216)
Q Consensus 94 ~~~~~l~p-G~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---------------------------------~~~~~~ 139 (216)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..+.. ..+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34455666 5678999988 678899999998888765430 013468
Q ss_pred EEecCCcEEEEcCCCeEEEEECCCCc
Q 042226 140 KVLQKGDVFVFPIGLVHFQRNVGHGN 165 (216)
Q Consensus 140 ~~L~~GDv~~~P~G~~H~~~N~g~~~ 165 (216)
.+|++||+++||+|..|..+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984443
No 61
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.86 E-value=0.055 Score=40.82 Aligned_cols=63 Identities=30% Similarity=0.382 Sum_probs=46.4
Q ss_pred CcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcC--CCeEEEEECCC-CcEEEEE
Q 042226 102 WGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPI--GLVHFQRNVGH-GNAFSIS 170 (216)
Q Consensus 102 G~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~--G~~H~~~N~g~-~~a~~l~ 170 (216)
+.-.++|-|..-+-+.||++|++.-. |+. +. ..+|++||+-+.-+ |+.|.-.|.++ +++..+-
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~--G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQ 104 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL--GN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQ 104 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT--SE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC--CC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 45569999996555689999999764 443 22 57899999999876 68999999887 7777664
No 62
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.69 E-value=0.082 Score=44.78 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=44.9
Q ss_pred EEEcCCcccCCccCCCccEEEEEEe-CeEEEEEEecCC--------------CCceE------EEEecCCcEEEEcCCCe
Q 042226 97 IDYAPWGVVPPHVHPRATEILTVIE-GSLEVGFVTSNP--------------ENRLI------TKVLQKGDVFVFPIGLV 155 (216)
Q Consensus 97 ~~l~pG~~~ppH~Hp~a~Ei~yVl~-G~~~~~~~~~~~--------------~~~~~------~~~L~~GDv~~~P~G~~ 155 (216)
+.+.+|...|+|.|..-.|=++.-- |++.+.+..+.+ ++..+ ...|++|+.+-+++|..
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5578999999999998778666654 677777665431 11111 45899999999999999
Q ss_pred EEEEECCCCcEEEEEEEe
Q 042226 156 HFQRNVGHGNAFSISALS 173 (216)
Q Consensus 156 H~~~N~g~~~a~~l~~~~ 173 (216)
|++.-.+.. +++.=++
T Consensus 172 H~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEE-TTS--EEEEEEE
T ss_pred eeEEecCCC--EEEEeee
Confidence 999876544 4544333
No 63
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.37 E-value=0.21 Score=44.42 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=44.9
Q ss_pred EEEEEcCCc--ccCCccCCCccEEEEEEeCeEEEEEEecCC--------------C--CceEEEEecCCcEEEEcCCCeE
Q 042226 95 ARIDYAPWG--VVPPHVHPRATEILTVIEGSLEVGFVTSNP--------------E--NRLITKVLQKGDVFVFPIGLVH 156 (216)
Q Consensus 95 ~~~~l~pG~--~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~--------------~--~~~~~~~L~~GDv~~~P~G~~H 156 (216)
+.+-+.|++ ...+||=. ..-+++=++|+=+..+..... + ......+|++||++|+|+|.+|
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred eEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 344466666 68999877 466677788887776665210 0 1235789999999999999999
Q ss_pred EEEECCCCcEEE
Q 042226 157 FQRNVGHGNAFS 168 (216)
Q Consensus 157 ~~~N~g~~~a~~ 168 (216)
.....+ ..+.+
T Consensus 195 ~~~~~~-~S~hl 205 (319)
T PF08007_consen 195 QAVTTD-PSLHL 205 (319)
T ss_dssp EEEESS--EEEE
T ss_pred CCCCCC-CceEE
Confidence 999988 43433
No 64
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.26 E-value=0.064 Score=47.04 Aligned_cols=71 Identities=27% Similarity=0.295 Sum_probs=53.5
Q ss_pred EEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcC--CCeEEEEEC--CCCcEEEEEE
Q 042226 96 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPI--GLVHFQRNV--GHGNAFSISA 171 (216)
Q Consensus 96 ~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~--G~~H~~~N~--g~~~a~~l~~ 171 (216)
...+.||...+||-|..-+-+.||++|+++-.= +.+ + ...+++||+-..-+ |+.|.-.|. .++++..+-.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD--S~G-n---~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD--SLG-N---KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEee--cCC-c---eeeecccceeEEcCCCceeecccCCccCCCccceeee
Confidence 455899999999999965556899999988753 331 3 57999999999987 589999886 3345655554
Q ss_pred E
Q 042226 172 L 172 (216)
Q Consensus 172 ~ 172 (216)
.
T Consensus 122 W 122 (276)
T COG1741 122 W 122 (276)
T ss_pred e
Confidence 4
No 65
>PF12852 Cupin_6: Cupin
Probab=95.25 E-value=0.089 Score=42.71 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=35.7
Q ss_pred cEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECC
Q 042226 114 TEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVG 162 (216)
Q Consensus 114 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 162 (216)
.-+.+|++|+.++.+.+. .+ ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~~---~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG---GE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCC---CC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 567889999999987542 12 689999999999999999995443
No 66
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.23 E-value=0.076 Score=45.93 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=38.5
Q ss_pred CccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 107 PHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 107 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
||-+. +.++.++++|++.+.+. ++ .+.+++||++++|+|.+|......+
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~~-----~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFNG-----GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEecC-----Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 34444 57889999999998653 33 6899999999999999998765443
No 67
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.21 E-value=0.014 Score=50.51 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=44.3
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
+.-..+.++.|....+|+|+ ..|-.||++|++.++..... + ..+|.+|..+.-|.+..|... .++++++++.-
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~--~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIR 243 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS--N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIR 243 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE--T---TEEEEE-TT-EE--E-------EESS-EEEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC--C---CccccCCcccccCCccccccc-ccCCCEEEEEE
Confidence 34555667777778999999 78999999999999654321 2 579999999999999999998 78888888865
Q ss_pred Ee
Q 042226 172 LS 173 (216)
Q Consensus 172 ~~ 173 (216)
.+
T Consensus 244 td 245 (251)
T PF14499_consen 244 TD 245 (251)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 68
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=95.20 E-value=0.08 Score=44.32 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=46.2
Q ss_pred EEEEEEEcCCcccCCccCCCcc--EEEEEE--eCeEEEEEEecCC-----------C-----CceEEEEecCCcEEEEcC
Q 042226 93 SLARIDYAPWGVVPPHVHPRAT--EILTVI--EGSLEVGFVTSNP-----------E-----NRLITKVLQKGDVFVFPI 152 (216)
Q Consensus 93 s~~~~~l~pG~~~ppH~Hp~a~--Ei~yVl--~G~~~~~~~~~~~-----------~-----~~~~~~~L~~GDv~~~P~ 152 (216)
.+....+.+|+....|.|+++. =.+||- +|.....+.++.. . .......-++||+++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 3455567899999999999641 124443 2222222222110 0 001123448999999999
Q ss_pred CCeEEEEECCCCcEEEEEEEe
Q 042226 153 GLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 153 G~~H~~~N~g~~~a~~l~~~~ 173 (216)
-+.|...-...+.-++-.+||
T Consensus 177 ~L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 177 WLRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CCceecCCCCCCCCEEEEEEe
Confidence 999998544434445555554
No 69
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.11 E-value=0.033 Score=46.87 Aligned_cols=58 Identities=16% Similarity=0.354 Sum_probs=49.5
Q ss_pred EcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEE
Q 042226 99 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRN 160 (216)
Q Consensus 99 l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 160 (216)
=.|+...--|..+ ++|++|=.+|...+-+++. ++.+..++++||++..|+.++|+-+.
T Consensus 40 GGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~---g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 40 GGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ---GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred cCCCcccccccCC-cchhheeecCceEEeeecc---CcceeeEEecCcEEEeccCCCCChhh
Confidence 3566677889888 7999999999999999886 56668899999999999999997644
No 70
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.09 E-value=0.088 Score=38.71 Aligned_cols=76 Identities=22% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEEcCCcccCCccCCCcc--EEEEEE--eCeEEEEEEecCC----------------CCceEEEEecCCcEEEEcCCCeE
Q 042226 97 IDYAPWGVVPPHVHPRAT--EILTVI--EGSLEVGFVTSNP----------------ENRLITKVLQKGDVFVFPIGLVH 156 (216)
Q Consensus 97 ~~l~pG~~~ppH~Hp~a~--Ei~yVl--~G~~~~~~~~~~~----------------~~~~~~~~L~~GDv~~~P~G~~H 156 (216)
....+|+..++|.|+.+. =++||- ++...+.+.++.. ....+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 346789999999999532 123332 2222233333210 02234567899999999999999
Q ss_pred EEEECCCCcEEEEEEE
Q 042226 157 FQRNVGHGNAFSISAL 172 (216)
Q Consensus 157 ~~~N~g~~~a~~l~~~ 172 (216)
...-...+.-++-.+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 9854443334444444
No 71
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=95.08 E-value=0.12 Score=42.89 Aligned_cols=78 Identities=24% Similarity=0.252 Sum_probs=48.4
Q ss_pred EEEEEcCCcccCCccCCCccEEE-EEEeCeEEEEEEecC---C-----------CCce------EEEEecCCcEEEEcCC
Q 042226 95 ARIDYAPWGVVPPHVHPRATEIL-TVIEGSLEVGFVTSN---P-----------ENRL------ITKVLQKGDVFVFPIG 153 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~-yVl~G~~~~~~~~~~---~-----------~~~~------~~~~L~~GDv~~~P~G 153 (216)
..+...+|...|+|.|.+..|=+ ---.|++.+...... + +++. -...|++|+.+-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 34567899999999999655532 222344444433211 0 1111 1357999999999999
Q ss_pred CeEEEEECCCCcEEEEEEEeC
Q 042226 154 LVHFQRNVGHGNAFSISALSS 174 (216)
Q Consensus 154 ~~H~~~N~g~~~a~~l~~~~s 174 (216)
+.|+++..+.. +++.-.++
T Consensus 169 ~~HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred ceeeeeecCCc--EEEEEEee
Confidence 99999875544 44443343
No 72
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.06 E-value=0.12 Score=47.95 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=39.0
Q ss_pred CccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEE
Q 042226 107 PHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISAL 172 (216)
Q Consensus 107 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 172 (216)
.-.+-+++|++++-+|++++.-. - + ...+++||.++||+|+.+.+.-. ++++.+.+=
T Consensus 140 ~f~NaDGD~Li~~q~G~l~l~Te--~--G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E 196 (424)
T PF04209_consen 140 AFRNADGDELIFPQQGSLRLETE--F--G---RLDVRPGDYVVIPRGTRFRVELP--GPARGYIIE 196 (424)
T ss_dssp EEEESSEEEEEEEEES-EEEEET--T--E---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEE
T ss_pred ceEcCCCCEEEEEEECCEEEEec--C--e---eEEEcCCeEEEECCeeEEEEEeC--CCceEEEEE
Confidence 33466799999999999998642 2 3 56899999999999999998666 566666543
No 73
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.93 E-value=0.18 Score=44.21 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=54.1
Q ss_pred ceEEEEEEEcCCc---ccCCccCCCccEE-EEEE--eCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCC
Q 042226 91 GVSLARIDYAPWG---VVPPHVHPRATEI-LTVI--EGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHG 164 (216)
Q Consensus 91 gvs~~~~~l~pG~---~~ppH~Hp~a~Ei-~yVl--~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 164 (216)
.+-+....+.||+ .-|||.|++..|. +|-- ++.-.+.+.++- ++.+...++-+|+++.|+..+|.. .|..
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p--dETrh~~v~n~~aVisP~wsih~g--~gt~ 249 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP--QETRHIVVHNEQAVISPSWSIHSG--VGTS 249 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc--cceeeEEEECCCEEECCCcceecC--cCcc
Confidence 4567767789997 3599999976674 3322 333333333321 343457899999999999999986 4555
Q ss_pred cEEEEEEEeCCC
Q 042226 165 NAFSISALSSQN 176 (216)
Q Consensus 165 ~a~~l~~~~s~~ 176 (216)
.-.|+...-.+|
T Consensus 250 ~y~fiw~m~gen 261 (276)
T PRK00924 250 NYTFIWGMAGEN 261 (276)
T ss_pred ccEEEEEecccC
Confidence 666666665444
No 74
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=94.85 E-value=0.27 Score=41.69 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=62.2
Q ss_pred CCceEEEeeccCCCCCccCceEEEEEEEcCCcccCC-ccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 72 LGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPP-HVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 72 ~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
.|...+.++.++ -...+.+..+.++||+..|- -+|- -+-=+||+||+..+.... + -..+++||.+..
T Consensus 166 dg~~attv~P~d----~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~----d---wv~V~aGD~mwm 233 (264)
T COG3257 166 DGVIATTVLPKE----LRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNN----N---WVPVEAGDYIWM 233 (264)
T ss_pred CCeEEEeeCccc----cCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecC----c---eEEeecccEEEe
Confidence 344444444333 34567899999999998754 3454 233489999999998842 2 679999999999
Q ss_pred cCCCeEEEEECCCCcEEEE
Q 042226 151 PIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 151 P~G~~H~~~N~g~~~a~~l 169 (216)
-+-++.+....|....+.+
T Consensus 234 ~A~cpQacyagG~g~frYL 252 (264)
T COG3257 234 GAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred eccChhhhccCCCCceEEE
Confidence 9999988888777755554
No 75
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.81 E-value=0.28 Score=45.50 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=45.4
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEE
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISAL 172 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 172 (216)
...-.+-+++|++++-+|++.+.-.- + ...+++||+++||+|+.+.+. ..+++++.+.+=
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi~E 205 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATEL----G---VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYVCE 205 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEEcCccEEEEe-cCCCCeeEEEEE
Confidence 34445667999999999999986532 3 468999999999999999885 334566666543
No 76
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.49 E-value=0.41 Score=44.43 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=44.0
Q ss_pred CccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEE
Q 042226 107 PHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISAL 172 (216)
Q Consensus 107 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 172 (216)
.-.+-+++|++++-+|++.+.-.- + ...+++||+++||+|+.+.+.- .+++++.+.+=
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l-~~gp~rgyv~E 198 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKTEL----G---KLQVSPGEIVVIPRGFRFAVDL-PDGPSRGYVLE 198 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEecCccEEEEec-CCCCeeEEEEe
Confidence 345667999999999999986432 3 4689999999999999988753 34566665543
No 77
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.26 E-value=0.25 Score=43.06 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=47.2
Q ss_pred cCCcccCCccC-CCccEEEEEEeCeEEEEEEecCCCCceEEEEecC-CcEEEEcCCCeEEEEECCCC
Q 042226 100 APWGVVPPHVH-PRATEILTVIEGSLEVGFVTSNPENRLITKVLQK-GDVFVFPIGLVHFQRNVGHG 164 (216)
Q Consensus 100 ~pG~~~ppH~H-p~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~-GDv~~~P~G~~H~~~N~g~~ 164 (216)
-|++...+|.| +...|.+.|++|++.+.+.++++ .......+.+ ++.-++|++..|...-.++.
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g-~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d 84 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG-EELSEHIFDAENQPPFIEPQAWHRIEAASDD 84 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC-CeeeEEEEecCCCCceeCCcceEEEEEcCCC
Confidence 46678899999 46788999999999998876642 2333455555 45667999999999876543
No 78
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=93.95 E-value=0.57 Score=43.44 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=44.4
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
...-..-+++|++++-+|++.+.-.- + ...+++||+++||+|+.+.+.-.+ +++.+.+
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~g--p~rgyi~ 197 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEF----G---RLLVEPNEICVIPRGVRFRVTVLE--PARGYIC 197 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEec----c---ceEecCCCEEEecCccEEEEeeCC--CceEEEE
Confidence 34445667999999999999986532 3 468999999999999999986654 5555543
No 79
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.71 E-value=0.14 Score=37.77 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=21.8
Q ss_pred ceEEEEecCCcEEEEcCCCeEEEEECCCC
Q 042226 136 RLITKVLQKGDVFVFPIGLVHFQRNVGHG 164 (216)
Q Consensus 136 ~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 164 (216)
+.++.+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 45678889999999999999999999864
No 80
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.40 E-value=0.48 Score=38.10 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=43.4
Q ss_pred EEEEEEEcCCcccCCccCCCccEE----EEEE-eCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEE
Q 042226 93 SLARIDYAPWGVVPPHVHPRATEI----LTVI-EGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAF 167 (216)
Q Consensus 93 s~~~~~l~pG~~~ppH~Hp~a~Ei----~yVl-~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~ 167 (216)
.+....+.||+.+.||.-+....+ -+++ .+...+.+. ++ ....++|++++|.-...|...|.|+++-+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~-----~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv 153 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG-----GE--TRHWREGECWVFDDSFEHEVWNNGDEDRV 153 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET-----TE--EEB--CTEEEEE-TTS-EEEEESSSS-EE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC-----Ce--EEEeccCcEEEEeCCEEEEEEeCCCCCEE
Confidence 344556799999999988743222 2233 234444442 33 67889999999999999999999987655
Q ss_pred EEE
Q 042226 168 SIS 170 (216)
Q Consensus 168 ~l~ 170 (216)
.+.
T Consensus 154 ~L~ 156 (163)
T PF05118_consen 154 VLI 156 (163)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 81
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=93.39 E-value=0.59 Score=37.89 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=49.1
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEe---c---CCCCceEEEEecCCcEEEEcCCCeEEEEECCCCc
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVT---S---NPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGN 165 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~---~---~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 165 (216)
+++..+++.||...|+|-|- ..-++=|+.|.=+-.+.. + .|+. ..+...+|++- .-+|.+|...|.+...
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~--qdk~~apgeV~-lSpgdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPER--QDKFAAPGEVH-LSPGDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcch--hhhhcCcceEe-eCCCCeeeecccCCCc
Confidence 68899999999999999998 677788888864432221 1 0111 13456666666 4447777777766554
Q ss_pred EEEEEEE
Q 042226 166 AFSISAL 172 (216)
Q Consensus 166 a~~l~~~ 172 (216)
...+=++
T Consensus 149 s~aiHvy 155 (191)
T COG5553 149 SGAIHVY 155 (191)
T ss_pred cceEEEE
Confidence 3344343
No 82
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=93.16 E-value=0.24 Score=41.27 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=67.7
Q ss_pred cCCCCceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEE
Q 042226 69 ENPLGSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVF 148 (216)
Q Consensus 69 ~~~~g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 148 (216)
+...|+++..+...+ .-..+++++.+.||...|-|+|- +-|...|++|... +++ + ++.+||..
T Consensus 110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~--G-----~y~vgD~~ 172 (216)
T COG3806 110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DEN--G-----EYLVGDFT 172 (216)
T ss_pred eecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCC--C-----ccccCcee
Confidence 345566666554322 22468999999999999999999 8999999999654 332 2 68899999
Q ss_pred EEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 149 VFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 149 ~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
.-+.++-|.-.-..+.++..++++.
T Consensus 173 ~~d~~v~H~piv~~~~eClcl~al~ 197 (216)
T COG3806 173 LADGTVQHSPIVLPPGECLCLAALD 197 (216)
T ss_pred ecCCccccccccCCCCCceEEEEcC
Confidence 9999999987667778888888875
No 83
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.10 E-value=0.75 Score=39.81 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=44.3
Q ss_pred eEEEEEEEcCCccc-----CCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 92 VSLARIDYAPWGVV-----PPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 92 vs~~~~~l~pG~~~-----ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
+.+.++...+.... ..|.+.+.-.++++++|++.+... ++ ...+++||+++++++.+|.+.-.++
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD-----DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC-----Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 45555555554221 234444445577889999998763 33 6799999999999999998765444
No 84
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=92.81 E-value=0.76 Score=38.49 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=64.0
Q ss_pred CceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCC---C-----CceEEE----
Q 042226 73 GSRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNP---E-----NRLITK---- 140 (216)
Q Consensus 73 g~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---~-----~~~~~~---- 140 (216)
...++.++. .....+++...-++||..+|+|=||.-+-+.-|+.|++.+.-.+--. + .+....
T Consensus 30 ~~~i~y~~i-----yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~ 104 (200)
T PF07847_consen 30 SPPITYMHI-----YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVV 104 (200)
T ss_pred CCCeEEEEE-----EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEe
Confidence 444555443 33446788889999999999999998777788999999986543210 0 011111
Q ss_pred --Ee-cCCc-EEEEcC--CCeEEEEECCCCcEEEEEEEe
Q 042226 141 --VL-QKGD-VFVFPI--GLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 141 --~L-~~GD-v~~~P~--G~~H~~~N~g~~~a~~l~~~~ 173 (216)
++ .+++ .+..|. |-+|.+.+.+ +++-++-++.
T Consensus 105 d~~~~a~~~~~vL~P~~ggNiH~f~a~~-~p~AflDIL~ 142 (200)
T PF07847_consen 105 DGEMTAPSDTCVLYPTSGGNIHEFTALT-GPCAFLDILA 142 (200)
T ss_pred cceecCCCCCeEEccCCCCeeEEEEeCC-CCeEEEEEcc
Confidence 12 2334 445565 4899999987 8999999885
No 85
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=0.078 Score=49.62 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=57.1
Q ss_pred CCCceEEEeeccCCCCC--------cc-Cc-eEEEEEEE-cCCc-ccCCccCCCccEEEEEEeCeEEEEEEecC-C----
Q 042226 71 PLGSRVTPVTVAQIPGL--------NT-LG-VSLARIDY-APWG-VVPPHVHPRATEILTVIEGSLEVGFVTSN-P---- 133 (216)
Q Consensus 71 ~~g~~~~~~~~~~~P~l--------~~-~g-vs~~~~~l-~pG~-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~---- 133 (216)
..|.++..++.+.|-.- +. .| +--+.+-+ +||+ -.+|||-. -+-+++=++|+=...+..+. +
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel 363 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEEL 363 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhh
Confidence 45778888877665320 00 01 01112223 5554 47999987 45667788998776665432 0
Q ss_pred -------------CCceEEEEecCCcEEEEcCCCeEEEEECC
Q 042226 134 -------------ENRLITKVLQKGDVFVFPIGLVHFQRNVG 162 (216)
Q Consensus 134 -------------~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 162 (216)
+.-++...|++||++|||+|.+|......
T Consensus 364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~ 405 (629)
T KOG3706|consen 364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPA 405 (629)
T ss_pred hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccccc
Confidence 12245678999999999999999875443
No 86
>PRK10579 hypothetical protein; Provisional
Probab=92.42 E-value=1.2 Score=32.88 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=41.0
Q ss_pred CccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 112 RATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 112 ~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
.+.|++-|++|++++.+.+++ . .+++++|+.|.+|++.--.++.. +....++.
T Consensus 40 ~~~E~MeivsG~l~V~Lpg~~---e--w~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 40 AEPEEMTVISGALNVLLPGAT---D--WQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred CCcEEEEEEeeEEEEECCCCc---c--cEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 468999999999999986542 2 67999999999999987776553 34444443
No 87
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.32 E-value=1.6 Score=32.14 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=42.4
Q ss_pred EEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEE
Q 042226 98 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISAL 172 (216)
Q Consensus 98 ~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 172 (216)
.+.||- .+..-.+.|++-|++|++++.+.+++ . .+++++|+.|.+|++.--.++-. ++...++.+
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~---e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGED---E--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT-S---S---EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc---c--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 456664 33334468999999999999996542 2 68999999999999988777653 455555543
No 88
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=92.26 E-value=0.83 Score=33.83 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=43.6
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
..+.++||+.......+...-++||++|++.+. ++ ...+.+|+.+++..|..=.+.+.+ +.++++..-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-------~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-------GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-------TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-------CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 456788887643332333355799999998762 22 257999999999976666665554 7777776543
No 89
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.18 E-value=1.9 Score=30.91 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=41.8
Q ss_pred cccCCccCCCc-cEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCC
Q 042226 103 GVVPPHVHPRA-TEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHG 164 (216)
Q Consensus 103 ~~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 164 (216)
+....|.-..+ ...+-|++|++.+...++.++--.....+.+|+..+|++...|.+.-.++.
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 44555644422 334789999999988775421112356889999999999999999887753
No 90
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.03 E-value=2.5 Score=38.44 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=49.8
Q ss_pred ceEEEEEEEcCCccc-CCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 91 GVSLARIDYAPWGVV-PPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 91 gvs~~~~~l~pG~~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
|+.+....+.. ++. ..-+.-+++|++++-+|++++.-.- + ..++++||..+||+|+....+-.+.+ ++.+
T Consensus 124 g~~i~~y~~n~-sm~~~~f~NADge~Livpq~G~l~l~te~----G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 124 GVAIHVYKVNE-SMTKRFFRNADGELLIVPQQGELRLKTEL----G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred ceEEEEEEccc-cchhhhhhcCCCCEEEEeecceEEEEEee----c---eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 44443333333 343 4445667899999999999985432 2 57999999999999999988776554 4444
Q ss_pred EE
Q 042226 170 SA 171 (216)
Q Consensus 170 ~~ 171 (216)
.+
T Consensus 195 ~~ 196 (427)
T COG3508 195 GC 196 (427)
T ss_pred EE
Confidence 43
No 91
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.39 E-value=1.3 Score=40.79 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=40.9
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQR 159 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 159 (216)
+.+.++++..+.. +....+.++++|++|++++... +. +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~-----~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKG-----EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeC-----Ce--EEEECCCCEEEEeCCCccEEE
Confidence 4566666655422 2222467999999999998541 22 578999999999998776654
No 92
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.19 E-value=4.3 Score=31.40 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=41.7
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
+.+.++...........-+.+.--+.+.++|...+... ++ ...+.+||+++++.+.++.+...++
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG-----GR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC-----CE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 45565555533322111112234456677888888763 23 7899999999999999988765543
No 93
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=90.07 E-value=1.4 Score=29.94 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=41.3
Q ss_pred EEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEE
Q 042226 97 IDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRN 160 (216)
Q Consensus 97 ~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 160 (216)
.++.||....++... ..+ +-|.+|++.++.... ...+.|++||.+.+++|..-.+..
T Consensus 2 ~~L~~g~~~~lr~~~-~~~-l~v~~G~vWlT~~g~-----~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQR-LRVESGRVWLTREGD-----PDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC-CcE-EEEccccEEEECCCC-----CCCEEECCCCEEEeCCCCEEEEEe
Confidence 356777766666444 344 889999999887432 237899999999999997765543
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=89.94 E-value=2.2 Score=37.58 Aligned_cols=59 Identities=27% Similarity=0.315 Sum_probs=41.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQR 159 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 159 (216)
.+++.++++...... ..+ .+..+++|++|++++.. . +. +..|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~~--~~~-~~~~il~v~~G~~~i~~--~---~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAEF--IQQ-QSALILSVLEGSGRIKS--G---GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCceee--ccC-CCcEEEEEEcceEEEEE--C---CE--EEEEecccEEEEccCCccEEE
Confidence 456777777644211 123 36789999999999864 1 22 678999999999999866554
No 95
>PLN02288 mannose-6-phosphate isomerase
Probab=89.54 E-value=1.1 Score=41.23 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=39.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCC
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGL 154 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~ 154 (216)
.+++.++++.+|.......+. +.++++|++|++++.... +. ....+++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~-gp~Illv~~G~~~i~~~~----~~-~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVP-GPSVFLVIEGEGVLSTGS----SE-DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCC-CCEEEEEEcCEEEEecCC----cc-ceEEEeceeEEEEeCCC
Confidence 456778888777532221133 688999999999985421 11 13579999999999864
No 96
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.19 E-value=2.1 Score=39.03 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=50.1
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
.+++-++++++|...-.-.-+ +.-++.|++|++++..... . ...++.||+++||+...-.+ +..+++...+-
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~---~---~~~v~rG~V~fI~a~~~i~~-~~~sd~~~~yr 403 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD---S---KILVNRGDVLFIPANHPIHL-SSSSDPFLGYR 403 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC---C---ceeeccCcEEEEcCCCCcee-eccCcceeeee
Confidence 346777888887553333344 6779999999999976421 2 57899999999999877644 33344444443
Q ss_pred EE
Q 042226 171 AL 172 (216)
Q Consensus 171 ~~ 172 (216)
++
T Consensus 404 Af 405 (411)
T KOG2757|consen 404 AF 405 (411)
T ss_pred cc
Confidence 33
No 97
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.55 E-value=5.9 Score=33.10 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=48.8
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
+.......+++|...-..=.+ ...+++|++|.+.+...++++ ++.....+.+||++-+..+..+...-.-.++++++
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 456677788888765433333 677899999999998776652 33445667999988765554443222223444444
No 98
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.51 E-value=0.76 Score=41.80 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=40.3
Q ss_pred EcCCcccCCccCCCccEEEEEEeCeEEEEEEecC-C--------------CCceEEEEecCCcEEEEcCCCeEEEEEC
Q 042226 99 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN-P--------------ENRLITKVLQKGDVFVFPIGLVHFQRNV 161 (216)
Q Consensus 99 l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~--------------~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 161 (216)
..+||.+.+||-++ +-+++=..|+=+..+.... . ..-....++.+||++|+|+|..|+....
T Consensus 126 a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 126 AAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred ecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 47889999999985 4444333444344443221 0 0011245899999999999999998665
No 99
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.14 E-value=12 Score=32.57 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=48.9
Q ss_pred ceEEEeeccCCCCCccCceEEEEEEEcCCc---ccCCccCCCc--------cEEEEEE-e---CeEEEEEEecCCCCceE
Q 042226 74 SRVTPVTVAQIPGLNTLGVSLARIDYAPWG---VVPPHVHPRA--------TEILTVI-E---GSLEVGFVTSNPENRLI 138 (216)
Q Consensus 74 ~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~---~~ppH~Hp~a--------~Ei~yVl-~---G~~~~~~~~~~~~~~~~ 138 (216)
-.|...-..+.+... .+-+..+. .|+| .-|||.|++. +|+.|-. . |-+...+....+ ..-.
T Consensus 135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~-~~d~ 210 (261)
T PF04962_consen 135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP-QLDE 210 (261)
T ss_dssp EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS-SSEE
T ss_pred EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC-CCcE
Confidence 344444444444222 34455554 5554 3699999962 5665542 2 333333333221 1224
Q ss_pred EEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCC
Q 042226 139 TKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQN 176 (216)
Q Consensus 139 ~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~ 176 (216)
...++-||++.+|+| -|.+...-.....++-++..++
T Consensus 211 ~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 678999999999999 3333222223444666766555
No 100
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=86.91 E-value=6.7 Score=31.76 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=37.4
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
....+++|...-..=.+ ...+++|++|.+.+...+.++ ++.....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEee
Confidence 45678888765433234 578999999999998765542 4445567899999844
No 101
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=84.76 E-value=5.7 Score=32.03 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=43.1
Q ss_pred cCCccCCCccEEEEEEeCeE-EEEEEecCC---C-CceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeC
Q 042226 105 VPPHVHPRATEILTVIEGSL-EVGFVTSNP---E-NRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSS 174 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~-~~~~~~~~~---~-~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s 174 (216)
.-+=.|+.++|.++-+.|+. .+.++...+ + .+++.+.+..|+.+.+-+|++|...-.=+++..++.+-..
T Consensus 72 ~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~~ 146 (165)
T PF04115_consen 72 SMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDRI 146 (165)
T ss_dssp EEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEEE
T ss_pred ceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeCC
Confidence 34556888899999999988 554544331 1 4577899999999999999999875555577777776433
No 102
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=84.75 E-value=7.4 Score=31.50 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=51.0
Q ss_pred ccCCccCCCccEEEEEEeCeEEEEEEecCC---CCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEE
Q 042226 104 VVPPHVHPRATEILTVIEGSLEVGFVTSNP---ENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISA 171 (216)
Q Consensus 104 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 171 (216)
+..+-.||.++|.++-+.|+-.+-++.+.+ ..+++.+..+.|+.+.+-+|++|...-.=+.+..++++
T Consensus 70 ~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 70 IRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 345567888999999999998887776431 13567889999999999999999765444455666544
No 103
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=84.44 E-value=18 Score=28.44 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=53.6
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeC-eEEEEEEecCCCCceEEEEecC----C--cEEEEcCCCeEEEEECCCC
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEG-SLEVGFVTSNPENRLITKVLQK----G--DVFVFPIGLVHFQRNVGHG 164 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~~~~~~~~~L~~----G--Dv~~~P~G~~H~~~N~g~~ 164 (216)
.+..+.-+.++....+|.= +++|+.+...| .+++.+.+++ ++..+..|.. | =.++||+|.....+..+..
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d--g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~ 117 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD--GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEG 117 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT--STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESS
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC--CCeEEEEECCCCCCCceEEEEECCCEEEEccccCCC
Confidence 4666666888777777755 48999888888 5788888775 5655556643 4 3689999999998766666
Q ss_pred cEEEEEEE
Q 042226 165 NAFSISAL 172 (216)
Q Consensus 165 ~a~~l~~~ 172 (216)
.-.+++..
T Consensus 118 ~y~Lvsc~ 125 (139)
T PF06172_consen 118 DYSLVSCT 125 (139)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEE
Confidence 66666543
No 104
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=82.93 E-value=3.8 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=31.6
Q ss_pred EEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCc-eEEEEecCCcEE
Q 042226 98 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENR-LITKVLQKGDVF 148 (216)
Q Consensus 98 ~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~-~~~~~L~~GDv~ 148 (216)
.+++|...-. -+.....+.+|++|.+.+...+.+ ++ .....+.+||++
T Consensus 3 ~~~~g~~i~~-~g~~~~~~~~i~~G~v~~~~~~~~--~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYR-QGDPCDHIYIILSGEVKVSSINED--GKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEE-TTSBESEEEEEEESEEEEEEETTT--SEEEEEEEEETTEEE
T ss_pred EECCCCEEEe-CCCcCCEEEEEEECceEEEeceec--ceeeeecceeeeccc
Confidence 4555543321 122268899999999999887664 33 235678888876
No 105
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=80.93 E-value=2.9 Score=37.57 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=35.8
Q ss_pred CceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCceeE
Q 042226 135 NRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGVIT 181 (216)
Q Consensus 135 ~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~ 181 (216)
.+-++...++|+.+++|.|..|.+.|...+-|+.--..+.+|.+.+-
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw 306 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVW 306 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceee
Confidence 55567889999999999999999999876655544444566666554
No 106
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=80.77 E-value=12 Score=32.85 Aligned_cols=52 Identities=17% Similarity=0.041 Sum_probs=37.8
Q ss_pred ccEE-EEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEEC--CCCcEEEEEE
Q 042226 113 ATEI-LTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNV--GHGNAFSISA 171 (216)
Q Consensus 113 a~Ei-~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~--g~~~a~~l~~ 171 (216)
..|+ ++.+.|++++.+. ++ ++.+.+.|++++|+|..-..... ...++++...
T Consensus 73 rrE~giV~lgG~~~V~vd-----G~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 73 RRELGIINIGGAGTVTVD-----GE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CcEEEEEEccceEEEEEC-----CE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 4675 6678999999874 33 56799999999999987666542 2456676654
No 107
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.73 E-value=6.1 Score=28.61 Aligned_cols=41 Identities=32% Similarity=0.336 Sum_probs=34.0
Q ss_pred ccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 042226 113 ATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 113 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 158 (216)
+.|++.|+.|.+.+.+.++. . .++..+|+.|.+|.+.-.-+
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~---d--Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSD---D--WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CceEEEEEeeEEEEEcCCCc---c--cEEecCCceEEcCCCCeEEE
Confidence 68999999999999887653 2 68999999999999865444
No 108
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=78.57 E-value=16 Score=32.65 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=40.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 042226 91 GVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 91 gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 158 (216)
.+++.+.++..-... .+ + ++..+++|++|++++... ++ ...|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~~-~-~~~~il~v~eG~~~l~~~-----~~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-IK-Q-ESFSILLVLEGEGTLIGG-----GQ--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-cc-C-CCcEEEEEEcCeEEEecC-----CE--EEEEcCCcEEEEEcCCCcEE
Confidence 346666666541111 11 2 268999999999999763 22 78999999999999865554
No 109
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=78.34 E-value=9.1 Score=30.79 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=35.8
Q ss_pred EEEEEcCCcccCCccCC-CccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEc
Q 042226 95 ARIDYAPWGVVPPHVHP-RATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFP 151 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 151 (216)
....+++|...-.---+ ....+++|++|.+++...++++ .+.....+.+||++-.+
T Consensus 7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGEE 63 (202)
T ss_pred ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeechH
Confidence 34456777543222121 2467899999999998876652 34455667999987543
No 110
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=77.41 E-value=12 Score=25.99 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEc
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFP 151 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 151 (216)
....+.+|... .+.......+.+|++|.+.+...+.++ +......+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDG-REQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCC-ceEEEEeecCCceechh
Confidence 34567777654 333334678999999999987664432 34456778899877443
No 111
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=76.09 E-value=6 Score=33.56 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=58.6
Q ss_pred cccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEeCCCCce--e
Q 042226 103 GVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALSSQNPGV--I 180 (216)
Q Consensus 103 ~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~--~ 180 (216)
|....|| ++-..+|++|+...... ++....+.++||..+.|+|......-..+. -++.--..--|.. +
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~~-----g~~~~evy~pGd~~~l~rg~a~~y~m~~~t--w~LEY~RG~IP~~lpf 181 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWSP-----GSLEPEVYKPGDSHHLPRGEAKQYQMPPGT--WALEYGRGWIPSMLPF 181 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEcC-----CCCCceEeccCCEEEecCceEEEEEeCCCe--EEEEecCCchhhhhHH
Confidence 4455555 56789999999987653 333467899999999999998877654332 2222111112221 1
Q ss_pred EeehhhhcCCCCCCHHHHHHHcCCCHH
Q 042226 181 TIANAVFGSNPAIAADILAKAFQVDKS 207 (216)
Q Consensus 181 ~~~~~lf~~~p~~p~~vl~~af~~~~~ 207 (216)
-+++.+|++ ++-..+-++..+..+
T Consensus 182 ~~~dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 182 GFADTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHHHHhc---cchHHHHHHHHHHHH
Confidence 234677777 777777777776653
No 112
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=75.88 E-value=12 Score=26.06 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=34.9
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
....+.+|...-.. ......+.+|++|.+.+...++++ .+.....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCcCh
Confidence 44557777654222 222477899999999998766541 2345667788888743
No 113
>PHA02984 hypothetical protein; Provisional
Probab=75.15 E-value=22 Score=31.22 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=40.6
Q ss_pred ccEE--EEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE
Q 042226 113 ATEI--LTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS 170 (216)
Q Consensus 113 a~Ei--~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 170 (216)
..|. +.+++|+.++..... ++..+..+++||.|.+.-+.-|.... ++..+++++
T Consensus 91 snEy~FvlCl~G~~~I~~~~~---~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~V 146 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNK---GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAV 146 (286)
T ss_pred eccEEEEEEcCCeEEEEEecC---CceeeeEEecCceEEEEccceEEEEe-CCCceEEEE
Confidence 3454 456799999987654 45578999999999999999999855 344555544
No 114
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=74.40 E-value=38 Score=29.41 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=43.8
Q ss_pred eEEEEEEEcCCcccCCccCCCccEE-EEEEeCeEEEEEEecCCCCceEEEEecCC--------cEEEEcCCCeEEEEECC
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEI-LTVIEGSLEVGFVTSNPENRLITKVLQKG--------DVFVFPIGLVHFQRNVG 162 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei-~yVl~G~~~~~~~~~~~~~~~~~~~L~~G--------Dv~~~P~G~~H~~~N~g 162 (216)
+.+..++|++|.....-.. ..|+ ++.++|++++.+.+. + ...+..- |++++|+|..-.+...+
T Consensus 27 ~~~~~l~L~~g~~~~~~~~--~~E~~vv~l~G~~~v~~~g~----~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~ 98 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELE--RRELGVVNLGGKATVTVDGE----E--FYELGGRESVFDGPPDALYVPRGTKVVIFAST 98 (261)
T ss_dssp BECCCEEEECCHCCCCCCC--SEEEEEEEESSSEEEEETTE----E--EEEE-TTSSGGGS--EEEEE-TT--EEEEESS
T ss_pred cceEEEEecCCCEEeccCC--CcEEEEEEeCCEEEEEeCCc----e--EEEecccccccCCCCcEEEeCCCCeEEEEEcC
Confidence 3456678888876544433 3555 667899999988421 2 5667776 99999999998887754
Q ss_pred CCcEEEE
Q 042226 163 HGNAFSI 169 (216)
Q Consensus 163 ~~~a~~l 169 (216)
+ +++.
T Consensus 99 ~--ae~~ 103 (261)
T PF04962_consen 99 D--AEFA 103 (261)
T ss_dssp T--EEEE
T ss_pred C--CEEE
Confidence 4 5544
No 115
>PHA02890 hypothetical protein; Provisional
Probab=74.17 E-value=19 Score=31.40 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=42.5
Q ss_pred ccEEE--EEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEE-EEeCCCC
Q 042226 113 ATEIL--TVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSIS-ALSSQNP 177 (216)
Q Consensus 113 a~Ei~--yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~-~~~s~~p 177 (216)
..|.+ .+++|+.++..... ++..+..+++||.|.+.-+.-|.... ..+.+++ .+.+.-|
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~---d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIG---DREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred eccEEEEEEeCCeEEEEEecC---CceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 45554 46799999987654 56678999999999999999999866 4444444 3344444
No 116
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=73.96 E-value=3 Score=30.13 Aligned_cols=21 Identities=62% Similarity=0.806 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHHhhhhhhc
Q 042226 1 MARRILVLSLLAITCANLALAF 22 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (216)
||||++++-||+..+ ..|+|+
T Consensus 1 MaRRlwiLslLAVtL-tVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTL-TVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHH-HHHhhc
Confidence 999999988888877 444443
No 117
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=72.62 E-value=3.1 Score=30.66 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=7.0
Q ss_pred ChhHHHHHHHH
Q 042226 1 MARRILVLSLL 11 (216)
Q Consensus 1 ~~~~~~~~~~~ 11 (216)
||+|.++++.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 88887644433
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=72.32 E-value=2 Score=37.89 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.8
Q ss_pred EEEecCCcEEEEcCCCeEE
Q 042226 139 TKVLQKGDVFVFPIGLVHF 157 (216)
Q Consensus 139 ~~~L~~GDv~~~P~G~~H~ 157 (216)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5689999999999999998
No 119
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=70.96 E-value=14 Score=30.56 Aligned_cols=53 Identities=4% Similarity=-0.007 Sum_probs=35.7
Q ss_pred EEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEc
Q 042226 97 IDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFP 151 (216)
Q Consensus 97 ~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 151 (216)
..+++|...-.. ......+.+|++|.+.+...++++ .+.....+.+||++-..
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEee
Confidence 456777654222 233578999999999998877652 34445678999988643
No 120
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=70.43 E-value=3.8 Score=36.64 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEecCCcEEEEcCCCeEEE
Q 042226 138 ITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 138 ~~~~L~~GDv~~~P~G~~H~~ 158 (216)
....|++||.+++|+|.+|..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred cEEecCCCCEEEecCCCceee
Confidence 367899999999999999997
No 121
>PLN02868 acyl-CoA thioesterase family protein
Probab=70.28 E-value=17 Score=33.38 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=37.2
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
....+++|..+-.-=.+ ...+++|++|++++...+.+ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~--ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEE--ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCC--CcEEEEEeCCCCEeeh
Confidence 44567777654332233 67899999999999776654 3455678899998874
No 122
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=69.25 E-value=27 Score=30.20 Aligned_cols=85 Identities=25% Similarity=0.278 Sum_probs=54.9
Q ss_pred ccCceEEEEEEEcCCcc---cCCccCCCccEEEEEE---eCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEEC
Q 042226 88 NTLGVSLARIDYAPWGV---VPPHVHPRATEILTVI---EGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNV 161 (216)
Q Consensus 88 ~~~gvs~~~~~l~pG~~---~ppH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 161 (216)
.+-.+++....++||.. .|+|.|.|-.|..+-. +-+-.+.+.++- .+.+..+++--+.++-|+..+|.. .
T Consensus 173 ~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP--~ETRHiv~~NEqAViSP~WSIHSG--~ 248 (278)
T COG3717 173 ESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP--QETRHIVMHNEQAVISPPWSIHSG--V 248 (278)
T ss_pred hhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC--CceeEEEEeccceeeCCCceeecC--c
Confidence 33346677788999975 5999999988864322 222233333321 344566778888888899999985 4
Q ss_pred CCCcEEEEEEEeCCC
Q 042226 162 GHGNAFSISALSSQN 176 (216)
Q Consensus 162 g~~~a~~l~~~~s~~ 176 (216)
|...-.|+...-.+|
T Consensus 249 GT~~YtFIWaMaGeN 263 (278)
T COG3717 249 GTANYTFIWAMAGEN 263 (278)
T ss_pred cccceEEEEEecccc
Confidence 555566666665444
No 123
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=68.44 E-value=20 Score=31.59 Aligned_cols=46 Identities=2% Similarity=-0.012 Sum_probs=37.3
Q ss_pred cEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCc
Q 042226 114 TEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGN 165 (216)
Q Consensus 114 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 165 (216)
.-++++.+|.+.+...+ +. ...+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~----g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS----GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC----Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 45889999999987532 22 579999999999999999999986544
No 124
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=67.90 E-value=37 Score=27.75 Aligned_cols=69 Identities=9% Similarity=-0.018 Sum_probs=50.6
Q ss_pred cCCccCCCccEEEEEEeC-eEEEEEEecCC---CCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 105 VPPHVHPRATEILTVIEG-SLEVGFVTSNP---ENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~---~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
..+=.||.+++.+.-+.| ...+.++.+.+ .+.++.+....|+.+.+-+|++|...-.=+.+..++++-.
T Consensus 71 ~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvdr 143 (171)
T PRK13395 71 TMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVDR 143 (171)
T ss_pred eeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEeC
Confidence 345568888999988999 66666664321 1346789999999999999999988665556666776543
No 125
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=66.78 E-value=6 Score=36.40 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEecCCcEEEEcCCCeEEE
Q 042226 137 LITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 137 ~~~~~L~~GDv~~~P~G~~H~~ 158 (216)
+....|++||++++|+|.+|..
T Consensus 236 LN~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEE
Confidence 3467899999999999999986
No 126
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=63.48 E-value=26 Score=24.87 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=39.5
Q ss_pred EEEcCCcccCCccCC---CccEEEEE--Ee-Ce-----EEEEEEecC-CCCceEEEE-----ecCCcEEEEcC-CCeEEE
Q 042226 97 IDYAPWGVVPPHVHP---RATEILTV--IE-GS-----LEVGFVTSN-PENRLITKV-----LQKGDVFVFPI-GLVHFQ 158 (216)
Q Consensus 97 ~~l~pG~~~ppH~Hp---~a~Ei~yV--l~-G~-----~~~~~~~~~-~~~~~~~~~-----L~~GDv~~~P~-G~~H~~ 158 (216)
..+.+|+...||+.. ....+.++ +. .. +...+.... .++...... .++|++++|+. ..+|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 346889889999876 33444333 34 11 233333210 001112223 88999999999 999998
Q ss_pred EECCCCcEEE
Q 042226 159 RNVGHGNAFS 168 (216)
Q Consensus 159 ~N~g~~~a~~ 168 (216)
.-.+.+..++
T Consensus 84 ~~v~~~~~R~ 93 (100)
T PF13640_consen 84 TPVGEGGRRY 93 (100)
T ss_dssp EEE-EESEEE
T ss_pred cccCCCCCEE
Confidence 7763333333
No 127
>PHA00672 hypothetical protein
Probab=59.04 E-value=69 Score=25.09 Aligned_cols=73 Identities=11% Similarity=-0.046 Sum_probs=53.4
Q ss_pred CceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 90 LGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
-|+....+.++.|....=-.|. -|-+++.+|.+.+...+ . .+.|+.--++.-|+|.....+.-.+. .+.
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdg-----e--~~rl~g~~~i~~~aG~KragyAHeDT--~wt 113 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGG-----E--AVELRGYHVIPASAGRKQAFVAHADT--DLT 113 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCC-----c--EEEEecceeeecCCCcccceeeeccc--eEE
Confidence 3788899999999887666776 34459999999997742 2 57888888888899887776664444 444
Q ss_pred EEEe
Q 042226 170 SALS 173 (216)
Q Consensus 170 ~~~~ 173 (216)
..+-
T Consensus 114 ~~h~ 117 (152)
T PHA00672 114 MLFP 117 (152)
T ss_pred EEec
Confidence 4443
No 128
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=57.42 E-value=40 Score=26.52 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=37.4
Q ss_pred EEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcC
Q 042226 94 LARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPI 152 (216)
Q Consensus 94 ~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 152 (216)
.....+++|...-..--+ +.-+.+|++|.+.+....+++ .+.....+.+||.+-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHH
Confidence 344456666444333334 455889999999999887652 334455788999986664
No 129
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=56.34 E-value=44 Score=27.53 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=33.7
Q ss_pred EEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 97 IDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 97 ~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
..+++|...-.- -.....+.+|++|.+.+...++++ ++.....+.+||++-.
T Consensus 40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceecc
Confidence 356676543222 222567899999999998876652 3434455689999854
No 130
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=51.57 E-value=35 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=26.8
Q ss_pred ccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEE
Q 042226 113 ATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFV 149 (216)
Q Consensus 113 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 149 (216)
...+++|++|.+.+...++++ .+.....+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEee
Confidence 456889999999998776652 344456789999874
No 131
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=50.60 E-value=1.1e+02 Score=24.01 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=39.3
Q ss_pred cEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEE---CCCCcEEEEEEE
Q 042226 114 TEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRN---VGHGNAFSISAL 172 (216)
Q Consensus 114 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N---~g~~~a~~l~~~ 172 (216)
.=+.+|++|+=++.+++ + .+...+|+.++.+.+++-...- ..++|...+..-
T Consensus 24 p~i~~vlQG~K~~~~g~-----~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLGD-----Q--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred CeEEEEEeeeEEEEECC-----c--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 45899999999998853 2 6899999999999998776544 335666666543
No 132
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=48.12 E-value=1.1e+02 Score=24.04 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=37.2
Q ss_pred eEEEEEEEcCC--cccCCccCCCccEEEEEEeCeEEEEEE-ecCC------------------CCceEEEEecCCcEEEE
Q 042226 92 VSLARIDYAPW--GVVPPHVHPRATEILTVIEGSLEVGFV-TSNP------------------ENRLITKVLQKGDVFVF 150 (216)
Q Consensus 92 vs~~~~~l~pG--~~~ppH~Hp~a~Ei~yVl~G~~~~~~~-~~~~------------------~~~~~~~~L~~GDv~~~ 150 (216)
+.+...+.... .-..+=.|.+-..+-|+++|+=++++. .... +.......|++|+.++|
T Consensus 46 ~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~if 125 (153)
T PF04074_consen 46 LFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIF 125 (153)
T ss_dssp -EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE
T ss_pred EEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEE
Confidence 44444444333 334566788788899999999888883 2210 11112457999999999
Q ss_pred cCCCeEEEE
Q 042226 151 PIGLVHFQR 159 (216)
Q Consensus 151 P~G~~H~~~ 159 (216)
-++-+|.-.
T Consensus 126 fP~d~H~p~ 134 (153)
T PF04074_consen 126 FPEDAHRPG 134 (153)
T ss_dssp -TT--EEEE
T ss_pred CCCcccccc
Confidence 999999854
No 133
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=47.04 E-value=71 Score=25.63 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=41.7
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCC-----------------CC-ceEEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNP-----------------EN-RLITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------~~-~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
..+=.|.+=-.+-++++|+=.+++....+ +. .....+|.+|+..+|=+|.+|.......
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 34445555689999999998887765431 00 1236789999999999999998754443
No 134
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.49 E-value=9.4 Score=32.41 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=32.5
Q ss_pred CceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEE
Q 042226 90 LGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGF 128 (216)
Q Consensus 90 ~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~ 128 (216)
-++|+...-++|++++|+|-||.-+-+.=++=|++.+--
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVks 111 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKS 111 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeee
Confidence 467889999999999999999976666778889887753
No 135
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=44.68 E-value=2.1e+02 Score=24.84 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=53.5
Q ss_pred ceEEEeeccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecC-C--CCceEEEEecCCcEEEE
Q 042226 74 SRVTPVTVAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN-P--ENRLITKVLQKGDVFVF 150 (216)
Q Consensus 74 ~~~~~~~~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~--~~~~~~~~L~~GDv~~~ 150 (216)
+.+..++.++ ++..- +.+..+++.+|.....-.-. -+-++.+++|++.+...+.. + +.|.-.++=++=|++++
T Consensus 14 g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYv 89 (270)
T COG3718 14 GLVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYV 89 (270)
T ss_pred cceEEecCCC-CCcee--EEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEe
Confidence 3455554333 34433 45566678999876666555 24567788999998765432 0 12222334456799999
Q ss_pred cCCCeEEEEECCC
Q 042226 151 PIGLVHFQRNVGH 163 (216)
Q Consensus 151 P~G~~H~~~N~g~ 163 (216)
|.|....+...++
T Consensus 90 p~g~~~~vtA~t~ 102 (270)
T COG3718 90 PAGSAFSVTATTD 102 (270)
T ss_pred cCCceEEEEeecc
Confidence 9999988876654
No 136
>PLN02288 mannose-6-phosphate isomerase
Probab=44.06 E-value=18 Score=33.47 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=18.5
Q ss_pred EEEecCCcEEEEcCCCeEEE
Q 042226 139 TKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 139 ~~~L~~GDv~~~P~G~~H~~ 158 (216)
...|++||.+++|+|.+|..
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 56999999999999999985
No 137
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=43.62 E-value=85 Score=25.82 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEE
Q 042226 96 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVF 150 (216)
Q Consensus 96 ~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 150 (216)
...+++|...- +-......+++|++|.+.+.....+ ++.....+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~--~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD--RETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC--ceEEEEEeCCCchhhh
Confidence 45577775432 3344467899999999999765432 4445667888997643
No 138
>COG1741 Pirin-related protein [General function prediction only]
Probab=43.24 E-value=2.3e+02 Score=24.88 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEE
Q 042226 83 QIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEV 126 (216)
Q Consensus 83 ~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~ 126 (216)
..|.-+.. +....+.+++|...+.+ -..-.-++||++|++.+
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 34444444 77888889999887776 22224579999998887
No 139
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=43.22 E-value=29 Score=27.34 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHhh
Q 042226 191 PAIAADILAKAFQVDKSVVDQLQT 214 (216)
Q Consensus 191 p~~p~~vl~~af~~~~~~v~~l~~ 214 (216)
|.++++-|+++|++++|.+++|++
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~ 111 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQK 111 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhc
Confidence 458999999999999999999976
No 140
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=42.86 E-value=1.7e+02 Score=23.10 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=39.3
Q ss_pred CCccCCCccEEEEEEeCeEEEEEEecCC----------------CCceEEEEecCCcEEEEcCCCeEEEE
Q 042226 106 PPHVHPRATEILTVIEGSLEVGFVTSNP----------------ENRLITKVLQKGDVFVFPIGLVHFQR 159 (216)
Q Consensus 106 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------------~~~~~~~~L~~GDv~~~P~G~~H~~~ 159 (216)
.+=.|.+=..+-|+++|+=.+++..... .+......|++|+.++|.++..|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4455666788999999998888754320 01112678999999999999999875
No 141
>PF13994 PgaD: PgaD-like protein
Probab=42.42 E-value=31 Score=26.84 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCHHHHHHHcCCCHHHHHHHhh
Q 042226 193 IAADILAKAFQVDKSVVDQLQT 214 (216)
Q Consensus 193 ~p~~vl~~af~~~~~~v~~l~~ 214 (216)
++++=+|+.|++++++++++++
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~ 122 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQ 122 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHh
Confidence 8999999999999999999976
No 142
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=42.16 E-value=98 Score=24.15 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEE----eCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEE
Q 042226 84 IPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVI----EGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQR 159 (216)
Q Consensus 84 ~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl----~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 159 (216)
-|+++.+ ...++.+++|..... .+..|+...+ .|++.+++.++. -..+++||++.+-.|....++
T Consensus 11 ~P~~kN~--~v~fIvl~~g~~tkT---kdg~~v~~~kVaD~TgsI~isvW~e~------~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 11 KPGLKNI--NVTFIVLEYGRATKT---KDGHEVRSCKVADETGSINISVWDEE------GCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred Chhhhcc--eEEEEEEeeceeeec---cCCCEEEEEEEecccceEEEEEecCc------CcccCCccEEEecccchhhhc
Confidence 3667754 566666777754322 2345654443 678888888753 347999999999998776654
Q ss_pred E
Q 042226 160 N 160 (216)
Q Consensus 160 N 160 (216)
+
T Consensus 80 g 80 (134)
T KOG3416|consen 80 G 80 (134)
T ss_pred C
Confidence 4
No 143
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=41.64 E-value=1.6e+02 Score=22.73 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=33.6
Q ss_pred ccCCccCCCccEEEEEEeCeEEEEEEecCC-------------------CCceEEEEecCCcEEEEcCCCeEEE
Q 042226 104 VVPPHVHPRATEILTVIEGSLEVGFVTSNP-------------------ENRLITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 104 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~-------------------~~~~~~~~L~~GDv~~~P~G~~H~~ 158 (216)
...+=.|.+=.-+-|+++|+=++++..... ........|++|+..+|-++-+|.-
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~P 133 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKP 133 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCcccc
Confidence 344555666688999999998888853210 0111234566666666666666654
No 144
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=41.13 E-value=27 Score=23.61 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHHH
Q 042226 1 MARRILVLSLLAITC 15 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (216)
||.|+++++||.+++
T Consensus 1 MA~Kl~vialLC~aL 15 (65)
T PF10731_consen 1 MASKLIVIALLCVAL 15 (65)
T ss_pred CcchhhHHHHHHHHH
Confidence 899999877765554
No 145
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=41.12 E-value=19 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.455 Sum_probs=20.3
Q ss_pred hhhhcCCCCCCHHHHHHHcCCCHHHHHHHhhcC
Q 042226 184 NAVFGSNPAIAADILAKAFQVDKSVVDQLQTKF 216 (216)
Q Consensus 184 ~~lf~~~p~~p~~vl~~af~~~~~~v~~l~~~~ 216 (216)
..-+|+ .+.-|.+.+|++++++++||+++
T Consensus 39 ~~~yGs----~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 39 DERYGS----VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHSS----HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHcCC----HHHHHHHcCCCCHHHHHHHHHHc
Confidence 344665 67788999999999999999763
No 146
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=39.18 E-value=37 Score=27.27 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHhh
Q 042226 191 PAIAADILAKAFQVDKSVVDQLQT 214 (216)
Q Consensus 191 p~~p~~vl~~af~~~~~~v~~l~~ 214 (216)
|.++++-+++.|+++++.++++++
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~ 120 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKS 120 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHh
Confidence 459999999999999999999976
No 147
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=38.80 E-value=3e+02 Score=24.85 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=45.1
Q ss_pred cCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEEEEEe
Q 042226 105 VPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSISALS 173 (216)
Q Consensus 105 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 173 (216)
...-+..++.-++.-.+|.+.+.- +- + +..+.++++-+||+|....+--.|...-.++.++.
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--Ef--G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg 208 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EF--G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYG 208 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--ec--c---ceeecccceEEeecccEEEEecCCCCcceEEEEec
Confidence 445566666666666778877653 22 3 45789999999999999988777777777777775
No 148
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=38.24 E-value=35 Score=30.89 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=54.4
Q ss_pred ccCCCCCccCceEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCC----------------------C----
Q 042226 81 VAQIPGLNTLGVSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNP----------------------E---- 134 (216)
Q Consensus 81 ~~~~P~l~~~gvs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------------------~---- 134 (216)
--.+|+.++.++.+....-+.|...|.|.-+. ..++.=+.|+.++.+.-..+ +
T Consensus 239 yc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~f 317 (355)
T KOG2132|consen 239 YCSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAF 317 (355)
T ss_pred eeecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhh
Confidence 34566666645555555455588999997775 67788888888877764331 0
Q ss_pred -----CceEEEEecCCcEEEEcCCCeEEEEEC
Q 042226 135 -----NRLITKVLQKGDVFVFPIGLVHFQRNV 161 (216)
Q Consensus 135 -----~~~~~~~L~~GDv~~~P~G~~H~~~N~ 161 (216)
.+.....|++||++++|+-..|+....
T Consensus 318 p~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 318 PKFAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred hHHHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 111234789999999999999987543
No 149
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=38.13 E-value=71 Score=32.12 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=33.5
Q ss_pred EEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEE
Q 042226 94 LARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVF 148 (216)
Q Consensus 94 ~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 148 (216)
+....+.||..+-.-=.+ ..++++|++|++.+..... +++.....+++||.+
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~--~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEG--EKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecC--CcceeeEEccCCCEe
Confidence 344467787644222223 5789999999999854322 133345689999987
No 150
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=38.10 E-value=18 Score=33.16 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=42.1
Q ss_pred CCcccCCc---cCCCccEEEEEEeCeEEEEEEecCCC-----------------------CceEEEEecCCcEEEEcCCC
Q 042226 101 PWGVVPPH---VHPRATEILTVIEGSLEVGFVTSNPE-----------------------NRLITKVLQKGDVFVFPIGL 154 (216)
Q Consensus 101 pG~~~ppH---~Hp~a~Ei~yVl~G~~~~~~~~~~~~-----------------------~~~~~~~L~~GDv~~~P~G~ 154 (216)
.|...|.| +|. .-+...+-|+=+--+..+..+ ....+..=++|+++++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 35568888 775 446667778766655544210 11112334799999999999
Q ss_pred eEEEEECCCC
Q 042226 155 VHFQRNVGHG 164 (216)
Q Consensus 155 ~H~~~N~g~~ 164 (216)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999875
No 151
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=34.91 E-value=1.5e+02 Score=20.25 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=32.8
Q ss_pred EEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEECCCCcEEEE
Q 042226 119 VIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRNVGHGNAFSI 169 (216)
Q Consensus 119 Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 169 (216)
-..|...+.+.+.+ +..++...+++||..-+..+..- ....|+..++-+
T Consensus 4 ~a~~~sWv~V~d~d-G~~~~~~~l~~G~~~~~~~~~~~-~i~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDAD-GKVLFSGTLKAGETKTFEGKEPF-RIRIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCC-CcEeeeeeeCCCcEEEEeCCCCE-EEEEeCCCcEEE
Confidence 34577888887554 25678899999999988544433 345566555544
No 152
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=30.99 E-value=1e+02 Score=24.06 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=20.7
Q ss_pred ceEEEEecCCcEEEEcCCCeEEEE-ECCC
Q 042226 136 RLITKVLQKGDVFVFPIGLVHFQR-NVGH 163 (216)
Q Consensus 136 ~~~~~~L~~GDv~~~P~G~~H~~~-N~g~ 163 (216)
......+++||++++...++|.-. |.++
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSD 206 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SS
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCc
Confidence 335678999999999999999874 4443
No 153
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.74 E-value=85 Score=31.46 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=33.9
Q ss_pred EEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEE
Q 042226 98 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVF 148 (216)
Q Consensus 98 ~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 148 (216)
.+.||..+-..=.+ -+|+.+|++|.+.+.-.+. ++......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~--g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDG--GGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccC--CceEEEEEecCCCcc
Confidence 35666655555566 6899999999998754332 233457899999987
No 154
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=28.24 E-value=69 Score=19.64 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=17.7
Q ss_pred CCHHHHHHHcCCCHHHHHHHhhcC
Q 042226 193 IAADILAKAFQVDKSVVDQLQTKF 216 (216)
Q Consensus 193 ~p~~vl~~af~~~~~~v~~l~~~~ 216 (216)
.+..-+++.+|++..+|.+..++|
T Consensus 18 ~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 18 WSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp --HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHc
Confidence 788899999999999999987764
No 155
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=28.19 E-value=88 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred ccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcC
Q 042226 113 ATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPI 152 (216)
Q Consensus 113 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 152 (216)
..-++|+++|++.+... . ....|.+||.+++-.
T Consensus 135 ~~~l~~~~~G~~~i~~~-----~--~~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEG-----G--NCISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCC-----E--EEEEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecC-----C--CceEcCCCCEEEEeC
Confidence 56678999998776432 1 268999999998876
No 156
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=28.02 E-value=1.3e+02 Score=24.61 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=33.6
Q ss_pred EEEEEEeCeEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEE
Q 042226 115 EILTVIEGSLEVGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQRN 160 (216)
Q Consensus 115 Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 160 (216)
-+..-++|+..+.+... +.++..+|.+||-+++.++.+-.+..
T Consensus 131 ~~~~~l~G~G~v~l~~~---G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGY---GAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEEC---CSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEeC---CcEEEEEccCCceEEEcCCCEEEECC
Confidence 44567899999988765 67889999999999999988776644
No 157
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=27.16 E-value=58 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=18.7
Q ss_pred CCCHHHHHHHcCCCHHHHHHHhhc
Q 042226 192 AIAADILAKAFQVDKSVVDQLQTK 215 (216)
Q Consensus 192 ~~p~~vl~~af~~~~~~v~~l~~~ 215 (216)
++++..+++..++++++|++++++
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~ 95 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKE 95 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHH
Confidence 499999999999999999998764
No 158
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=26.90 E-value=23 Score=35.71 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEecCCcEEEEcCCCeEEEEECCC
Q 042226 139 TKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 139 ~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
+.+=.-||.++||+|.+|..+|.-.
T Consensus 800 tfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 800 TFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred chhhcccceEEecCCCcHHhhhhhh
Confidence 4555789999999999999998643
No 159
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=25.57 E-value=2e+02 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEecCCcEEEEcCCCeEEEEECCC
Q 042226 138 ITKVLQKGDVFVFPIGLVHFQRNVGH 163 (216)
Q Consensus 138 ~~~~L~~GDv~~~P~G~~H~~~N~g~ 163 (216)
....+++|++++||...+|...-...
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeeccC
Confidence 36678999999999999999876543
No 160
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=24.67 E-value=72 Score=19.28 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhhhhhcCCCCCcceeee
Q 042226 3 RRILVLSLLAITCANLALAFEPSPLQDFCVA 33 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~~dfcv~ 33 (216)
+|+++.+|.+.+. +.+.--...+-.||=|+
T Consensus 3 sKl~l~CLA~aav-F~~a~va~a~~~~f~Va 32 (37)
T PF11131_consen 3 SKLFLICLAAAAV-FTAAGVANAPAHQFHVA 32 (37)
T ss_pred hhHHHHHHHHHHH-HHhhcccCCchhhhhHH
Confidence 6777777755443 32222233345566665
No 161
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.57 E-value=1.1e+02 Score=30.20 Aligned_cols=50 Identities=30% Similarity=0.394 Sum_probs=33.8
Q ss_pred eEEEEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEE
Q 042226 92 VSLARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVF 148 (216)
Q Consensus 92 vs~~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 148 (216)
+.+.....+||.. --|.-..-.-+.+|++|++++.-. ++ ....|.+||+|
T Consensus 569 m~f~~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQD-----DE-VVAILGKGDVF 618 (971)
T KOG0501|consen 569 MEFQTNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQD-----DE-VVAILGKGDVF 618 (971)
T ss_pred HHHHhccCCCcce-eeecCCccceEEEEEecceEEeec-----Cc-EEEEeecCccc
Confidence 3444455677643 345545556789999999998543 23 36899999998
No 162
>PF15240 Pro-rich: Proline-rich
Probab=23.85 E-value=66 Score=26.51 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHHH
Q 042226 1 MARRILVLSLLAITC 15 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (216)
|-.-||.++||||.+
T Consensus 1 MLlVLLSvALLALSS 15 (179)
T PF15240_consen 1 MLLVLLSVALLALSS 15 (179)
T ss_pred ChhHHHHHHHHHhhh
Confidence 444444555555555
No 163
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=23.54 E-value=1.8e+02 Score=19.18 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=19.3
Q ss_pred EEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 042226 126 VGFVTSNPENRLITKVLQKGDVFVFPIGLVHFQ 158 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 158 (216)
+++-++. ++.++.+|++|..+.--+|.++.-
T Consensus 12 VQlTD~K--gr~~Ti~L~~G~~fhThrG~i~HD 42 (54)
T PF14801_consen 12 VQLTDPK--GRKHTITLEPGGEFHTHRGAIRHD 42 (54)
T ss_dssp EEEEETT----EEEEE--TT-EEEETTEEEEHH
T ss_pred EEEccCC--CCeeeEEECCCCeEEcCccccchh
Confidence 4555654 677899999999999888877643
No 164
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=23.35 E-value=99 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=27.4
Q ss_pred EEEecCCcEEEEcCCCeEEE-EECCC-CcEEEEEEEeCCC
Q 042226 139 TKVLQKGDVFVFPIGLVHFQ-RNVGH-GNAFSISALSSQN 176 (216)
Q Consensus 139 ~~~L~~GDv~~~P~G~~H~~-~N~g~-~~a~~l~~~~s~~ 176 (216)
...+++||++++..-++|.- .|.++ ....++..|++.+
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 45789999999999999976 45554 3445555666543
No 165
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=21.87 E-value=65 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=16.6
Q ss_pred CCHHHHHHHcCCCHHHHHHHhhc
Q 042226 193 IAADILAKAFQVDKSVVDQLQTK 215 (216)
Q Consensus 193 ~p~~vl~~af~~~~~~v~~l~~~ 215 (216)
+..+-++...|+..|+|.++-++
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHH
Confidence 56777899999999999887554
No 166
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.65 E-value=1.7e+02 Score=28.07 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=31.8
Q ss_pred EEEEEcCCcccCCccCCCccEEEEEEeCeEEEEEEecCCCCceEEEEecCCcEE
Q 042226 95 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPENRLITKVLQKGDVF 148 (216)
Q Consensus 95 ~~~~l~pG~~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 148 (216)
....+.||-.+--- -.-+.|+++|.+|.+.+- +++ ++..-.++++|+++
T Consensus 331 k~qvfSPgDyICrK-GdvgkEMyIVk~G~L~Vv--~dD--g~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 331 KPQVFSPGDYICRK-GDVGKEMYIVKEGKLAVV--ADD--GVTVFVTLKAGSVF 379 (536)
T ss_pred cceeeCCCCeEEec-CcccceEEEEEccEEEEE--ecC--CcEEEEEecCCcee
Confidence 33445566432211 123789999999999873 332 55567899999887
No 167
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=21.43 E-value=70 Score=29.16 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.1
Q ss_pred EEEecCCcEEEEcCCCeEEEEE
Q 042226 139 TKVLQKGDVFVFPIGLVHFQRN 160 (216)
Q Consensus 139 ~~~L~~GDv~~~P~G~~H~~~N 160 (216)
...|++|+.+++|+|.+|....
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4589999999999999998644
No 168
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=21.31 E-value=93 Score=31.44 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=47.9
Q ss_pred EEEEEcCCcc-cCCccCCCccEEEEEEeCeEEEEEEe-----cC-------C--CCceEEEEecCCcEEEEcCCCeEEEE
Q 042226 95 ARIDYAPWGV-VPPHVHPRATEILTVIEGSLEVGFVT-----SN-------P--ENRLITKVLQKGDVFVFPIGLVHFQR 159 (216)
Q Consensus 95 ~~~~l~pG~~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~-----~~-------~--~~~~~~~~L~~GDv~~~P~G~~H~~~ 159 (216)
.-..+.+|+. +--|.+. +.-++|-+.++..-.... .. + ..+-+...|++|+.++||.|.+|...
T Consensus 139 tdfhidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~ 217 (776)
T KOG1633|consen 139 TDFHIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVL 217 (776)
T ss_pred cccccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeee
Confidence 3345666664 4456666 567777776653311100 00 0 12335678999999999999999987
Q ss_pred ECCCCcEEEEEEEeCC
Q 042226 160 NVGHGNAFSISALSSQ 175 (216)
Q Consensus 160 N~g~~~a~~l~~~~s~ 175 (216)
-.-+.-+...-++.+.
T Consensus 218 Tp~d~l~fgGnflhsl 233 (776)
T KOG1633|consen 218 TPTDCLVFGGNFLHSL 233 (776)
T ss_pred cCcchheeccchhhhh
Confidence 7665544444444333
No 169
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=20.21 E-value=68 Score=24.36 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=20.6
Q ss_pred EEEEeCe---EEEEEEecCCCCceEEEEecCCcEEEEcC
Q 042226 117 LTVIEGS---LEVGFVTSNPENRLITKVLQKGDVFVFPI 152 (216)
Q Consensus 117 ~yVl~G~---~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 152 (216)
.|+++|+ ..+.+.+.. .+..++||.+++-.
T Consensus 56 TYvI~g~~gSg~I~lNGAA------Ar~~~~GD~vII~s 88 (111)
T cd06919 56 TYVIPGERGSGVICLNGAA------ARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEcCCCCCEEEeCCHH------HhcCCCCCEEEEEE
Confidence 6888877 566654432 56789999888754
Done!