BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042227
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 26/157 (16%)
Query: 24 DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF 83
++++ + G ++ +M D+S N LSG IP S+P L L L ND+SG
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-- 668
Query: 84 VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-L 142
IP+ +G L+ L LDLSSN L G IP +MS++T L+ +
Sbjct: 669 ----------------------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
+LS N+L+GPIP QF+TF P+ ++ N LC PL
Sbjct: 707 DLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPL 742
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 90/197 (45%), Gaps = 49/197 (24%)
Query: 6 LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLSNNSLSGGIPASFCS 64
L G IP +S N +++ LSNN L+GEIP W G LE L + LSNNS SG IPA
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 65 LPSLVWL--------------------KLSKNDLSGELFVALQN------CTAFTGFPEF 98
SL+WL K++ N ++G+ +V ++N C EF
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 99 -------ITEPSGRIPENIGSL-------------QKLETLDLSSNHLSGPIPPSMSSMT 138
+ S R P NI S + LD+S N LSG IP + SM
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 139 RL-SLNLSYNDLTGPIP 154
L LNL +ND++G IP
Sbjct: 654 YLFILNLGHNDISGSIP 670
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
G IPP++S L LS N LSG IPS+ L +L L N L G IP + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 68 LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
L L L NDL+GE+ L NCT +G IP+ IG L+ L L LS+N S
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 128 GPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
G IP + L L+L+ N G IP
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGL-EELMVKDLSNNSLSGGIPASFCSLP 66
G IPP +K+ +L L+ N +GEIP G + L DLS N G +P F S
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 67 SLVWLKLSKNDLSGEL-FVALQNCTAFTGFPEFITEPSGRIPENIGSLQK-LETLDLSSN 124
L L LS N+ SGEL L E SG +PE++ +L L TLDLSSN
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 125 HLSGPIPPSMSSMTRLSLNLSY---NDLTGPIPLT 156
+ SGPI P++ + +L Y N TG IP T
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 16 EMKNFSFLDLSNNILSGEIPSNW---EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
++ + LDLS N +SG W +G EL +S N +SG + S C +L +L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLD 203
Query: 73 LSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPP 132
+S N+ S + L +C+A + SG I + +L+ L++SSN GPIPP
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 133 -SMSSMTRLSLNLSYNDLTGPIP 154
+ S+ LS L+ N TG IP
Sbjct: 263 LPLKSLQYLS--LAENKFTGEIP 283
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
+S ++L+G IP + M L+L +N +SG IP L L + DLS+N L G IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 61 SFCSLPSLVWLKLSKNDLSG 80
+ +L L + LS N+LSG
Sbjct: 696 AMSALTMLTEIDLSNNNLSG 715
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 30/170 (17%)
Query: 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
P + + LD+S N LSG+ EL + ++S+N G IP L SL +L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 72 KLSKNDLSGELFVALQN-CTAFTGF-----------PEFITEP-------------SGRI 106
L++N +GE+ L C TG P F SG +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 107 P-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR--LSLNLSYNDLTGPI 153
P + + ++ L+ LDLS N SG +P S+++++ L+L+LS N+ +GPI
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 14 MSEMKNFSFLDLSNNILSGEIP--SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
+S N FLD+S+N S IP + L+ L D+S N LSG + + L L
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL---DISGNKLSGDFSRAISTCTELKLL 249
Query: 72 KLSKNDLSGEL----FVALQNCT----AFTG-FPEFITEPSGRIPENIGSLQKLETLDLS 122
+S N G + +LQ + FTG P+F++ G+ L LDLS
Sbjct: 250 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS----------GACDTLTGLDLS 299
Query: 123 SNHLSGPIPP 132
NH G +PP
Sbjct: 300 GNHFYGAVPP 309
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 49 LSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL--FVALQNCTA--FTGFPEFITEPSG 104
LSN+ ++G + CS SL L LS+N LSG + +L +C+ F + G
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 105 RIPENIGSLQKLETLDLSSNHLSG 128
++ + L LE LDLS+N +SG
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISG 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 26/157 (16%)
Query: 24 DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF 83
++++ + G ++ +M D+S N LSG IP S+P L L L ND+SG
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-- 671
Query: 84 VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-L 142
IP+ +G L+ L LDLSSN L G IP +MS++T L+ +
Sbjct: 672 ----------------------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
+LS N+L+GPIP QF+TF P+ ++ N LC PL
Sbjct: 710 DLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPL 745
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 90/197 (45%), Gaps = 49/197 (24%)
Query: 6 LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLSNNSLSGGIPASFCS 64
L G IP +S N +++ LSNN L+GEIP W G LE L + LSNNS SG IPA
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 65 LPSLVWL--------------------KLSKNDLSGELFVALQN------CTAFTGFPEF 98
SL+WL K++ N ++G+ +V ++N C EF
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 99 -------ITEPSGRIPENIGSL-------------QKLETLDLSSNHLSGPIPPSMSSMT 138
+ S R P NI S + LD+S N LSG IP + SM
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 139 RL-SLNLSYNDLTGPIP 154
L LNL +ND++G IP
Sbjct: 657 YLFILNLGHNDISGSIP 673
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
G IPP++S L LS N LSG IPS+ L +L L N L G IP + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 68 LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
L L L NDL+GE+ L NCT +G IP+ IG L+ L L LS+N S
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 128 GPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
G IP + L L+L+ N G IP
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLSNNSLSGGIPASFCSLP 66
G IPP +K+ +L L+ N +GEIP G + L DLS N G +P F S
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 67 SLVWLKLSKNDLSGEL-FVALQNCTAFTGFPEFITEPSGRIPENIGSLQK-LETLDLSSN 124
L L LS N+ SGEL L E SG +PE++ +L L TLDLSSN
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 125 HLSGPIPPSMSSMTRLSLNLSY---NDLTGPIPLT 156
+ SGPI P++ + +L Y N TG IP T
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 16 EMKNFSFLDLSNNILSGEIPSNW---EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
++ + LDLS N +SG W +G EL +S N +SG + S C +L +L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLD 206
Query: 73 LSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPP 132
+S N+ S + L +C+A + SG I + +L+ L++SSN GPIPP
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 133 -SMSSMTRLSLNLSYNDLTGPIP 154
+ S+ LS L+ N TG IP
Sbjct: 266 LPLKSLQYLS--LAENKFTGEIP 286
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
+S ++L+G IP + M L+L +N +SG IP L L + DLS+N L G IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 61 SFCSLPSLVWLKLSKNDLSG 80
+ +L L + LS N+LSG
Sbjct: 699 AMSALTMLTEIDLSNNNLSG 718
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 30/170 (17%)
Query: 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
P + + LD+S N LSG+ EL + ++S+N G IP L SL +L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 72 KLSKNDLSGELFVALQN-CTAFTGF-----------PEFITEP-------------SGRI 106
L++N +GE+ L C TG P F SG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 107 P-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR--LSLNLSYNDLTGPI 153
P + + ++ L+ LDLS N SG +P S+++++ L+L+LS N+ +GPI
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 14 MSEMKNFSFLDLSNNILSGEIP--SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
+S N FLD+S+N S IP + L+ L D+S N LSG + + L L
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL---DISGNKLSGDFSRAISTCTELKLL 252
Query: 72 KLSKNDLSGEL----FVALQNCT----AFTG-FPEFITEPSGRIPENIGSLQKLETLDLS 122
+S N G + +LQ + FTG P+F++ G+ L LDLS
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS----------GACDTLTGLDLS 302
Query: 123 SNHLSGPIPP 132
NH G +PP
Sbjct: 303 GNHFYGAVPP 312
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 49 LSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL--FVALQNCTA--FTGFPEFITEPSG 104
LSN+ ++G + CS SL L LS+N LSG + +L +C+ F + G
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 105 RIPENIGSLQKLETLDLSSNHLSG 128
++ + L LE LDLS+N +SG
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISG 165
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
++ + ++G IP +S++K LD S N LSG +P + L L+ N +SG IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 61 SFCSLPSL-VWLKLSKNDLSGELFVALQNCT-AFTGFPEFITEPSGRI------------ 106
S+ S L + +S+N L+G++ N AF + E +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 107 -PEN--------IGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLT 156
+N +G + L LDL +N + G +P ++ + L SLN+S+N+L G IP
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 157 KQFQTFNDPSIYMGNADLCSPPL 179
Q F D S Y N LC PL
Sbjct: 288 GNLQRF-DVSAYANNKCLCGSPL 309
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLV 69
+P +S K+ + +DLSNN +S ++ + +L+ LS N L P +F L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 70 WLKLSKNDLS 79
L L ND+S
Sbjct: 106 LLSLHGNDIS 115
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 106 IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR-LSLNLSYNDLTGPIPLT 156
+P+ + + + L +DLS+N +S S S+MT+ L+L LSYN L P T
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 23 LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
LDLS+ + +E L++L V +L+ N ++ +F L +L L LS N L GEL
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGEL 329
Query: 83 FVALQNCTAFTGFPE--FITEPSGRIP----ENIGSLQKLETLDLSSNHLS 127
+ + F G P+ +I I + L+KL+TLDL N L+
Sbjct: 330 Y-----SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
L+ + +N + + N L+LS N+L SN+ GL ++ DL N ++
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSL--QKLET 118
+F L L L L N L+ F+ +G + +T P + N+ L +LE
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG-NKLVTLPKINLTANLIHLSENRLEN 415
Query: 119 LDL 121
LD+
Sbjct: 416 LDI 418
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 33/146 (22%)
Query: 38 WEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE 97
+EGL L V L++N L+ P F L +L L L+ N L+
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT------------------ 517
Query: 98 FITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTK 157
+P N LE LD+S N L P P S++ L++++N L+
Sbjct: 518 --VLSHNDLPAN------LEILDISRNQLLAPNPDVFVSLS--VLDITHNKFICECELST 567
Query: 158 QFQTFNDPSIYMGNADLCSPPLTTKC 183
N N + PP C
Sbjct: 568 FINWLNHT-----NVTIAGPPADIYC 588
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL- 68
+P +E++N +FLDLS L P+ + L L V ++++N L F L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 69 -VWL 71
+WL
Sbjct: 522 KIWL 525
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 22 FLDLS-NNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS-FCSLPSLVWLKLSKNDLS 79
+LDLS N +++ + SN+ GLE+L D +++L S F SL +L++L +S
Sbjct: 377 YLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 80 GELFVALQNCTAFTGFPEF-ITEPSGR------IPENIGSLQKLETLDLSSNHLSGPIPP 132
VA F G + + +G +P+ L+ L LDLS L P
Sbjct: 435 ----VAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 133 SMSSMTRLS-LNLSYNDL 149
+ +S++ L LN++ N L
Sbjct: 489 AFNSLSSLQVLNMASNQL 506
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
+ LDL NN +S +++GL+ L L NN +S +F L L L +SKN L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
N + L+L++N L P+N+ +L + D NS+S P LP L L L N+L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 79 ---SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQK-LETLDLSSNHLS 127
S + FV N T + ++ +I N QK L LDLS N LS
Sbjct: 86 SQISDQTFVFCTNLTEL----DLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 4 SLLNGTIPPS-MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS 55
+L N I PS ++N + LDLSNN ++ EGLE L + D +N+L+
Sbjct: 465 ALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 23 LDLSNNILSGEIPSNWEGLE--ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND--- 77
L L+NN L S + GL+ L DLS N+L SF LPSL +L L N+
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 78 LSGELFVALQN 88
LS F L N
Sbjct: 287 LSPRSFYGLSN 297
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 38 WEGLEELMVK--DLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS---GELFVALQNCTAF 92
++GLE VK DLS + + + + F L L L++N+++ F L +
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
F+ R+ EN L KLE LDLS NH+
Sbjct: 329 NLSQNFLGSIDSRMFEN---LDKLEVLDLSYNHIRA 361
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 23 LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
L+LS N L +E L++L V DLS N + SF LP+L L L N L
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79
+ LDL NN ++ +++ L+ L L NN +S P +F L L L LSKN L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79
+ LDL NN ++ +++ L+ L L NN +S P +F L L L LSKN L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
N + L+L++N L +N+ +L D+ N++S P LP L L L N+L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQK-LETLDLSSNHLS 127
S CT T ++ +I N QK L TLDLS N LS
Sbjct: 91 SQLSDKTFAFCTNLTEL-HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
N + L+L++N L +N+ +L D+ N++S P LP L L L N+L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQK-LETLDLSSNHLS 127
S CT T ++ +I N QK L TLDLS N LS
Sbjct: 86 SQLSDKTFAFCTNLTEL-HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
+ S + + LDL N + E+ W GLE + LS N SF +PSL L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459
Query: 72 KLSK-----NDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
L + D S F L+N T I + + E L+KLE LDL N+L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE---GLEKLEILDLQHNNL 516
Query: 127 S 127
+
Sbjct: 517 A 517
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
N + L+L++N L +N+ +L D+ N++S P LP L L L N+L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQK-LETLDLSSNHLS 127
S CT T ++ +I N QK L TLDLS N LS
Sbjct: 96 SQLSDKTFAFCTNLTEL-HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
+ S + + LDL N + E+ W GLE + LS N SF +PSL L
Sbjct: 410 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 469
Query: 72 KLSK-----NDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
L + D S F L+N T I + + E L+KLE LDL N+L
Sbjct: 470 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE---GLEKLEILDLQHNNL 526
Query: 127 S 127
+
Sbjct: 527 A 527
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L S+N +S
Sbjct: 289 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFSNNKVSD--V 341
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 342 SSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L S+N +S
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFSNNKVSD--V 342
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSL 54
+P +E++N +FLDLS L P+ + L L V ++S+N+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 8/157 (5%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+ S + N FLDL+ ++ ++ +L L+ N L S L L
Sbjct: 51 TFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLF 110
Query: 73 LSKNDLSGELFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSN---HLSG 128
L++ +S F+ + N S +PEN + Q L+ LD +N ++S
Sbjct: 111 LTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIHYISR 169
Query: 129 PIPPSMSSMTRLSLNLSYNDLTGPIP---LTKQFQTF 162
S+ T LSLN + ND+ G P ++K FQ+
Sbjct: 170 KDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSL 206
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLV 69
+P +E++N +FLDLS L P+ + L L V ++S+N+ + L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 70 WLKLSKNDL 78
L S N +
Sbjct: 522 VLDYSLNHI 530
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLV 69
+P +E++N +FLDLS L P+ + L L V ++S+N+ + L SL
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 70 WLKLSKNDL 78
L S N +
Sbjct: 546 VLDYSLNHI 554
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 38 WEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN-DLSGELF-----------VA 85
W+ L++L ++ N +P +LP + ++ N +SGE V
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 86 LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLS 145
+ + G+ T P + ++ +KL L+ N L G +P S + SLNL+
Sbjct: 305 EKIQIIYIGYNNLKTFP---VETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLA 361
Query: 146 YNDLT 150
YN +T
Sbjct: 362 YNQIT 366
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 103 SGRIPENIGSLQKLETLDLSSN 124
SGR+P+ IG L +LE L L S+
Sbjct: 94 SGRVPDAIGQLTELEVLALGSH 115
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L ++N +S
Sbjct: 293 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANNKVSD--V 345
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 346 SSLANLTNINWLSAGHNQISDLTPL 370
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
S S +LDLS + W GL L L+ N + P SF L SL
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL---- 101
Query: 73 LSKNDLSGELFVALQNCTA-FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL-SGPI 130
E VA++ A FP IG L L+ L+++ N + S +
Sbjct: 102 --------ENLVAVETKLASLESFP-------------IGQLITLKKLNVAHNFIHSCKL 140
Query: 131 PPSMSSMTRL-SLNLSYN 147
P S++T L ++LSYN
Sbjct: 141 PAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
S S +LDLS + W GL L L+ N + P SF L SL
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL---- 106
Query: 73 LSKNDLSGELFVALQNCTA-FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL-SGPI 130
E VA++ A FP IG L L+ L+++ N + S +
Sbjct: 107 --------ENLVAVETKLASLESFP-------------IGQLITLKKLNVAHNFIHSCKL 145
Query: 131 PPSMSSMTRL-SLNLSYN 147
P S++T L ++LSYN
Sbjct: 146 PAYFSNLTNLVHVDLSYN 163
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 114 QKLETLDLSSN---HLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
+KL+ LD +N +LS S+ T LSLNL+ ND+ G P
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILS-----GEIPSNWEGLEELMVKDLSNNSLS 55
S +LL T+ + + L L N L E+ + + L++L D+S NS+S
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL---DISQNSVS 387
Query: 56 GGIPASFCS-LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQ 114
CS SL+ L +S N L+ +F L + + IP+ + L+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLE 444
Query: 115 KLETLDLSSNHLSG 128
L+ L+++SN L
Sbjct: 445 ALQELNVASNQLKS 458
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 108 ENIGSLQKLETLDLSSNHLS-----GPIPPSMSSMTRLSL---NLSYNDLTGPIPLTKQF 159
EN G L +LETL L N L + M S+ +L + ++SY++ G TK
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 160 QTFNDPS-IYMGNADLCSPP 178
+ N S I C PP
Sbjct: 402 LSLNMSSNILTDTIFRCLPP 421
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 37 NWEGLEELMVKDLSNNSLSGGIPASFCS-LPSLVWLKLSKNDLSGELFVALQNCTAFTGF 95
N LE L D+S NSL+ C+ S++ L LS N L+G +F L
Sbjct: 401 NMSSLETL---DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKV 454
Query: 96 PEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
+ IP+++ LQ L+ L+++SN L
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
LS + LN + + N +LDLS+N L + L+ L V L NN +
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
Query: 61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
+F + L L LS+N +S FP + + ++P KL LD
Sbjct: 131 AFEDMAQLQKLYLSQNQIS--------------RFPVELIKDGNKLP-------KLMLLD 169
Query: 121 LSSNHL 126
LSSN L
Sbjct: 170 LSSNKL 175
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L +N +S
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD--V 342
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L +N +S
Sbjct: 289 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD--V 341
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 342 SSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L +N +S
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD--V 342
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
+++ + N + LDL+NN +S P GL +L L N +S P L +L L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 73 LSKNDLSGELFVA-LQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
L++N L ++ L+N T T + I++ S + SL KL+ L +N +S
Sbjct: 294 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD--V 346
Query: 132 PSMSSMTRLS-LNLSYNDLTGPIPL 155
S++++T ++ L+ +N ++ PL
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPL 371
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 13 SMSEMKNFSFLDLS-NNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL--V 69
S +++ L LS N+I + EI + + GL L +L +N L+ +F L L +
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 70 WLK-----------------LSKNDLSGELFVALQNCTAFTGFPEF----ITEPSGRIPE 108
WL+ L + DL ++ + AF G + + R
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Query: 109 NIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141
N+ L KL+ LDLS NHLS P S + L
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,793,569
Number of Sequences: 62578
Number of extensions: 249554
Number of successful extensions: 827
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 165
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)