Query 042227
Match_columns 244
No_of_seqs 318 out of 2629
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.2E-25 2.6E-30 217.3 13.9 175 2-178 436-611 (968)
2 PLN00113 leucine-rich repeat r 99.8 6.3E-21 1.4E-25 184.5 9.9 154 2-155 148-302 (968)
3 KOG0617 Ras suppressor protein 99.8 3.7E-22 8.1E-27 150.9 -4.3 155 1-160 40-196 (264)
4 KOG4194 Membrane glycoprotein 99.6 8.2E-18 1.8E-22 147.7 -1.6 152 1-152 276-431 (873)
5 PLN03150 hypothetical protein; 99.6 4.4E-16 9.5E-21 143.8 9.6 117 67-184 419-538 (623)
6 KOG0617 Ras suppressor protein 99.6 1E-17 2.3E-22 126.9 -4.0 161 13-178 28-190 (264)
7 KOG4194 Membrane glycoprotein 99.6 6.1E-17 1.3E-21 142.3 -0.4 141 1-141 204-344 (873)
8 KOG0444 Cytoskeletal regulator 99.6 2.2E-16 4.8E-21 140.0 -1.6 166 8-179 212-380 (1255)
9 KOG0472 Leucine-rich repeat pr 99.6 3.8E-17 8.2E-22 138.0 -6.5 162 3-173 146-309 (565)
10 KOG0444 Cytoskeletal regulator 99.6 6.7E-16 1.4E-20 137.0 0.8 144 3-150 87-258 (1255)
11 KOG0472 Leucine-rich repeat pr 99.5 1.6E-15 3.6E-20 128.2 -2.7 145 1-150 395-541 (565)
12 KOG4237 Extracellular matrix p 99.5 2.2E-15 4.9E-20 127.0 -3.3 98 1-98 74-172 (498)
13 PLN03150 hypothetical protein; 99.4 3.1E-13 6.8E-18 124.9 7.6 111 44-154 420-532 (623)
14 KOG0532 Leucine-rich repeat (L 99.4 2.4E-14 5.2E-19 125.7 -1.7 143 2-152 106-249 (722)
15 KOG0532 Leucine-rich repeat (L 99.4 1E-14 2.2E-19 128.1 -5.9 147 1-155 82-228 (722)
16 PRK15387 E3 ubiquitin-protein 99.3 2.5E-12 5.3E-17 120.1 7.6 139 2-155 290-463 (788)
17 KOG0618 Serine/threonine phosp 99.3 1.1E-13 2.3E-18 127.4 -1.6 139 9-151 301-466 (1081)
18 PLN03210 Resistant to P. syrin 99.3 1.7E-11 3.7E-16 120.8 12.8 149 10-160 626-825 (1153)
19 PRK15370 E3 ubiquitin-protein 99.3 6E-12 1.3E-16 117.8 7.4 134 1-150 227-380 (754)
20 PRK15370 E3 ubiquitin-protein 99.3 1.2E-11 2.7E-16 115.6 8.7 76 19-103 221-296 (754)
21 KOG4237 Extracellular matrix p 99.3 1.9E-13 4.2E-18 115.5 -3.0 47 1-47 98-145 (498)
22 cd00116 LRR_RI Leucine-rich re 99.3 5E-13 1.1E-17 113.7 -1.3 140 12-151 75-235 (319)
23 KOG1259 Nischarin, modulator o 99.3 5.2E-13 1.1E-17 109.6 -1.4 134 15-154 281-416 (490)
24 PRK15387 E3 ubiquitin-protein 99.2 7.3E-11 1.6E-15 110.3 11.3 68 1-79 208-275 (788)
25 PF14580 LRR_9: Leucine-rich r 99.2 4.4E-12 9.4E-17 98.5 2.6 109 14-127 15-126 (175)
26 cd00116 LRR_RI Leucine-rich re 99.2 1E-12 2.2E-17 111.8 -1.2 150 1-150 88-263 (319)
27 KOG0618 Serine/threonine phosp 99.2 1.5E-12 3.3E-17 120.0 -0.8 128 17-148 358-487 (1081)
28 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.2E-16 107.3 4.5 145 3-154 125-294 (394)
29 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.2E-16 107.3 3.7 130 1-136 147-299 (394)
30 PLN03210 Resistant to P. syrin 99.1 3.2E-10 7E-15 111.8 11.0 128 17-150 610-738 (1153)
31 PF13855 LRR_8: Leucine rich r 99.1 7.3E-11 1.6E-15 75.8 4.1 61 18-78 1-61 (61)
32 PF14580 LRR_9: Leucine-rich r 99.0 1E-10 2.2E-15 90.8 3.0 122 24-152 3-128 (175)
33 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 96.3 0.4 125 1-132 291-416 (490)
34 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3E-14 69.8 3.0 61 42-126 1-61 (61)
35 KOG3207 Beta-tubulin folding c 98.6 7.9E-09 1.7E-13 88.9 0.3 115 13-127 141-259 (505)
36 KOG4579 Leucine-rich repeat (L 98.5 2.4E-09 5.3E-14 78.7 -4.0 104 19-150 28-136 (177)
37 KOG1859 Leucine-rich repeat pr 98.5 6E-10 1.3E-14 101.1 -8.7 128 19-152 165-294 (1096)
38 KOG1859 Leucine-rich repeat pr 98.5 1.5E-09 3.3E-14 98.5 -7.9 157 11-175 102-293 (1096)
39 KOG3207 Beta-tubulin folding c 98.5 2.2E-08 4.8E-13 86.2 -0.7 137 14-150 168-314 (505)
40 KOG1909 Ran GTPase-activating 98.4 2.4E-08 5.2E-13 83.7 -1.0 138 14-151 88-255 (382)
41 KOG0531 Protein phosphatase 1, 98.4 5.4E-08 1.2E-12 86.2 -0.0 129 14-150 91-221 (414)
42 KOG0531 Protein phosphatase 1, 98.3 1.6E-07 3.4E-12 83.3 0.3 140 2-151 103-246 (414)
43 PF12799 LRR_4: Leucine Rich r 98.3 7.7E-07 1.7E-11 52.9 3.0 36 19-55 2-37 (44)
44 KOG4658 Apoptotic ATPase [Sign 98.3 4.3E-07 9.3E-12 86.9 2.4 105 19-124 546-652 (889)
45 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 3.8E-11 51.3 3.6 37 42-79 1-37 (44)
46 KOG4658 Apoptotic ATPase [Sign 98.1 1.7E-06 3.8E-11 82.8 3.8 131 15-148 520-653 (889)
47 KOG1909 Ran GTPase-activating 98.1 4.2E-07 9.1E-12 76.4 -0.7 136 15-150 154-311 (382)
48 KOG4579 Leucine-rich repeat (L 98.1 2.3E-07 4.9E-12 68.4 -2.1 118 14-135 49-167 (177)
49 KOG1644 U2-associated snRNP A' 98.0 9.2E-06 2E-10 63.7 5.1 125 21-149 22-152 (233)
50 KOG2982 Uncharacterized conser 98.0 3.7E-06 8E-11 69.7 1.9 44 110-153 220-265 (418)
51 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.3E-10 62.5 4.8 108 17-126 41-152 (233)
52 KOG3665 ZYG-1-like serine/thre 97.8 1E-05 2.2E-10 75.8 2.4 133 18-152 122-265 (699)
53 COG5238 RNA1 Ran GTPase-activa 97.5 3E-05 6.5E-10 63.7 0.6 138 13-150 87-255 (388)
54 PRK15386 type III secretion pr 97.4 0.00033 7.1E-09 61.4 6.1 63 14-84 48-112 (426)
55 PF13306 LRR_5: Leucine rich r 97.3 0.0007 1.5E-08 49.5 6.4 107 12-123 6-112 (129)
56 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 59.6 2.3 64 63-127 62-129 (260)
57 KOG3665 ZYG-1-like serine/thre 97.3 0.0002 4.3E-09 67.3 3.3 114 16-131 146-267 (699)
58 PRK15386 type III secretion pr 97.3 0.00085 1.8E-08 58.9 6.8 63 2-78 60-124 (426)
59 KOG2739 Leucine-rich acidic nu 97.1 0.00032 7E-09 57.1 2.8 113 9-123 34-152 (260)
60 KOG2982 Uncharacterized conser 96.9 0.00029 6.4E-09 58.7 0.6 84 65-148 70-157 (418)
61 KOG2123 Uncharacterized conser 96.9 4.6E-05 1E-09 62.8 -4.1 101 16-120 17-123 (388)
62 KOG2120 SCF ubiquitin ligase, 96.9 1.9E-05 4.1E-10 65.6 -6.5 84 19-102 186-272 (419)
63 KOG2120 SCF ubiquitin ligase, 96.5 0.00021 4.5E-09 59.6 -3.1 65 15-79 207-273 (419)
64 PF13306 LRR_5: Leucine rich r 96.4 0.011 2.3E-07 43.1 5.9 101 11-116 28-128 (129)
65 PF00560 LRR_1: Leucine Rich R 96.3 0.0018 3.9E-08 32.1 1.1 19 20-39 2-20 (22)
66 PF00560 LRR_1: Leucine Rich R 96.2 0.0021 4.5E-08 31.9 0.9 21 43-64 1-21 (22)
67 COG5238 RNA1 Ran GTPase-activa 95.8 0.0051 1.1E-07 50.9 1.9 154 1-155 99-290 (388)
68 KOG0473 Leucine-rich repeat pr 95.4 0.00025 5.4E-09 57.1 -6.9 88 37-127 37-124 (326)
69 KOG2123 Uncharacterized conser 95.0 0.0015 3.2E-08 54.1 -3.6 81 14-97 37-124 (388)
70 PF13504 LRR_7: Leucine rich r 94.5 0.024 5.2E-07 26.1 1.3 13 19-31 2-14 (17)
71 KOG0473 Leucine-rich repeat pr 93.4 0.0016 3.6E-08 52.5 -6.4 88 13-103 37-124 (326)
72 smart00369 LRR_TYP Leucine-ric 92.8 0.084 1.8E-06 27.0 1.7 14 18-31 2-15 (26)
73 smart00370 LRR Leucine-rich re 92.8 0.084 1.8E-06 27.0 1.7 14 18-31 2-15 (26)
74 smart00370 LRR Leucine-rich re 91.9 0.13 2.8E-06 26.3 1.7 19 113-132 1-19 (26)
75 smart00369 LRR_TYP Leucine-ric 91.9 0.13 2.8E-06 26.3 1.7 19 113-132 1-19 (26)
76 PF13516 LRR_6: Leucine Rich r 90.2 0.065 1.4E-06 26.9 -0.4 15 66-80 2-16 (24)
77 KOG4308 LRR-containing protein 85.2 0.013 2.9E-07 52.9 -8.3 65 14-78 111-184 (478)
78 smart00364 LRR_BAC Leucine-ric 84.9 0.61 1.3E-05 24.0 1.2 18 114-132 2-19 (26)
79 KOG4308 LRR-containing protein 84.6 0.017 3.7E-07 52.1 -7.8 133 18-150 144-303 (478)
80 smart00365 LRR_SD22 Leucine-ri 84.5 0.81 1.8E-05 23.6 1.6 14 18-31 2-15 (26)
81 TIGR00864 PCC polycystin catio 82.1 0.85 1.8E-05 48.9 2.1 44 120-163 1-45 (2740)
82 KOG1947 Leucine rich repeat pr 80.3 0.51 1.1E-05 42.1 -0.2 62 65-126 242-307 (482)
83 smart00368 LRR_RI Leucine rich 77.6 1.8 3.9E-05 22.5 1.5 14 18-31 2-15 (28)
84 PF01102 Glycophorin_A: Glycop 77.0 2.8 6.2E-05 30.5 2.9 16 213-228 72-87 (122)
85 KOG3864 Uncharacterized conser 75.6 0.62 1.3E-05 37.0 -0.9 81 67-147 102-186 (221)
86 PF02009 Rifin_STEVOR: Rifin/s 70.3 3.6 7.8E-05 34.9 2.4 20 216-235 270-289 (299)
87 KOG3864 Uncharacterized conser 61.7 2.4 5.2E-05 33.8 -0.2 77 19-95 102-181 (221)
88 PF02439 Adeno_E3_CR2: Adenovi 60.9 8.8 0.00019 21.6 2.0 18 213-230 15-32 (38)
89 PRK01844 hypothetical protein; 60.7 7.2 0.00016 25.4 1.9 31 207-237 6-37 (72)
90 KOG1947 Leucine rich repeat pr 60.6 5.7 0.00012 35.3 2.0 87 15-101 211-306 (482)
91 TIGR01478 STEVOR variant surfa 58.7 6.9 0.00015 32.7 1.9 17 216-232 272-288 (295)
92 PTZ00370 STEVOR; Provisional 58.6 6.9 0.00015 32.7 1.9 23 216-238 268-292 (296)
93 KOG3763 mRNA export factor TAP 56.8 6 0.00013 36.2 1.4 11 66-76 244-254 (585)
94 PF08374 Protocadherin: Protoc 55.9 8.3 0.00018 30.8 1.9 22 206-227 37-60 (221)
95 PRK00523 hypothetical protein; 54.1 16 0.00035 23.8 2.7 29 207-235 7-36 (72)
96 PF14991 MLANA: Protein melan- 53.7 4 8.7E-05 29.0 -0.2 19 213-231 33-51 (118)
97 KOG3763 mRNA export factor TAP 52.8 7.1 0.00015 35.8 1.2 37 64-100 216-254 (585)
98 PF03672 UPF0154: Uncharacteri 51.9 18 0.00039 23.1 2.6 24 212-235 5-28 (64)
99 PF04478 Mid2: Mid2 like cell 51.4 9.8 0.00021 28.7 1.6 24 207-230 53-76 (154)
100 TIGR01477 RIFIN variant surfac 45.2 18 0.00039 31.3 2.4 17 219-235 327-343 (353)
101 PTZ00382 Variant-specific surf 44.2 9.2 0.0002 26.6 0.4 6 223-228 86-91 (96)
102 PF01102 Glycophorin_A: Glycop 43.1 16 0.00034 26.6 1.5 25 207-231 69-93 (122)
103 PTZ00046 rifin; Provisional 42.7 20 0.00044 31.1 2.4 17 219-235 332-348 (358)
104 TIGR00864 PCC polycystin catio 38.4 21 0.00045 39.1 2.1 32 24-55 1-32 (2740)
105 PF08370 PDR_assoc: Plant PDR 38.0 26 0.00057 22.4 1.8 21 204-224 25-45 (65)
106 PF04971 Lysis_S: Lysis protei 35.9 49 0.0011 21.3 2.8 28 205-232 31-60 (68)
107 smart00367 LRR_CC Leucine-rich 35.1 30 0.00066 17.2 1.5 15 113-127 1-16 (26)
108 PF04418 DUF543: Domain of unk 34.6 18 0.00038 23.9 0.6 23 208-232 31-53 (75)
109 PF01299 Lamp: Lysosome-associ 34.0 37 0.00081 28.8 2.7 11 205-215 272-282 (306)
110 PF12877 DUF3827: Domain of un 33.7 22 0.00048 33.2 1.3 31 203-233 266-299 (684)
111 PF15345 TMEM51: Transmembrane 33.3 73 0.0016 25.9 4.0 28 205-232 60-87 (233)
112 PF11669 WBP-1: WW domain-bind 32.7 48 0.001 23.3 2.6 21 213-233 29-49 (102)
113 PF05568 ASFV_J13L: African sw 29.0 69 0.0015 24.0 2.9 19 216-234 43-61 (189)
114 PF15050 SCIMP: SCIMP protein 28.2 61 0.0013 23.4 2.5 8 205-212 7-14 (133)
115 PF15179 Myc_target_1: Myc tar 28.2 48 0.001 25.9 2.1 27 206-232 23-51 (197)
116 PF05454 DAG1: Dystroglycan (D 26.8 21 0.00046 30.1 0.0 15 217-231 160-174 (290)
117 PF15102 TMEM154: TMEM154 prot 26.3 43 0.00093 25.2 1.5 13 220-232 75-87 (146)
118 PF05337 CSF-1: Macrophage col 25.0 24 0.00052 29.4 0.0 27 208-234 228-255 (285)
119 KOG4341 F-box protein containi 23.7 42 0.00091 30.0 1.2 62 64-125 318-383 (483)
120 PF12191 stn_TNFRSF12A: Tumour 23.4 43 0.00094 24.4 1.0 6 178-183 59-64 (129)
121 PRK10132 hypothetical protein; 22.6 76 0.0016 22.5 2.2 18 205-222 85-102 (108)
122 PF07204 Orthoreo_P10: Orthore 22.2 83 0.0018 21.7 2.2 26 205-230 40-67 (98)
123 PF05545 FixQ: Cbb3-type cytoc 21.9 96 0.0021 18.3 2.2 6 229-234 34-39 (49)
124 PF13120 DUF3974: Domain of un 21.2 51 0.0011 22.7 1.0 26 208-233 9-34 (126)
125 PF06679 DUF1180: Protein of u 21.2 1.6E+02 0.0034 22.7 3.8 17 213-229 105-121 (163)
126 PF05297 Herpes_LMP1: Herpesvi 20.2 34 0.00074 28.8 0.0 8 205-212 37-44 (381)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.2e-25 Score=217.30 Aligned_cols=175 Identities=36% Similarity=0.572 Sum_probs=144.6
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.+++.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence 3444444444444455555555555555555455433 346677778888888878888888899999999999999999
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ 160 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~ 160 (244)
+|..+..+++|+.|++++|.+++.+|..++.+++|++|++++|++++.+|..+..++.|+ +++++|+++|.+|...++.
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 594 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999998988
Q ss_pred cCCCCccccCCCCCCCCC
Q 042227 161 TFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 161 ~l~~~~~~~~n~~~c~~~ 178 (244)
++.... |.+|+.+|+.+
T Consensus 595 ~~~~~~-~~~n~~lc~~~ 611 (968)
T PLN00113 595 AINASA-VAGNIDLCGGD 611 (968)
T ss_pred ccChhh-hcCCccccCCc
Confidence 888887 99999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.3e-21 Score=184.53 Aligned_cols=154 Identities=38% Similarity=0.636 Sum_probs=95.8
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++++.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 45555555666666666666666666666656666666666666666666666655666666666666666666666666
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
+|..+.++++|+.|+++.|.+++.+|..++++++|++|++++|++++.+|..+.++++|+ +++++|.+.+.+|.
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 666666666666666666666666666666666666666666666655666666666666 66666666555543
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=3.7e-22 Score=150.88 Aligned_cols=155 Identities=30% Similarity=0.464 Sum_probs=142.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
||+|+++ .+|+.+.++.+|+.|++.+|+++ .+|..++.+++|++|+++-|++. .+|..|+.++.|+.||+++|++..
T Consensus 40 LSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 40 LSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred cccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccccc
Confidence 6889997 78889999999999999999999 88999999999999999999998 899999999999999999999974
Q ss_pred -chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227 81 -ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ 158 (244)
Q Consensus 81 -~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~ 158 (244)
.+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+..|+ +++.+|.++-.+|+.+.
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 68999999999999999999998 67888999999999999999998 8999999999999 99999999977776655
Q ss_pred cc
Q 042227 159 FQ 160 (244)
Q Consensus 159 ~~ 160 (244)
+.
T Consensus 195 l~ 196 (264)
T KOG0617|consen 195 LD 196 (264)
T ss_pred hh
Confidence 43
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=8.2e-18 Score=147.72 Aligned_cols=152 Identities=24% Similarity=0.218 Sum_probs=103.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|+.|+++..-..++.+|+.|+.|+++.|.|....++.+...++|++|+|++|+|+..-+++|..+..|++|+|+.|.++.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 34555554444566666667777777776665556666666677777777777764445566666667777777777665
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCc---ccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPE---NIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
.-...|..+.+|+.|++..|.+++.+-+ .|.++++|+.|++.+|++....-..|..++.|+ ||+.+|.+...
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 5555667777777777777777664433 367788888888888888844445788888888 88888887643
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=4.4e-16 Score=143.77 Aligned_cols=117 Identities=30% Similarity=0.436 Sum_probs=101.3
Q ss_pred CCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcc
Q 042227 67 SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLS 145 (244)
Q Consensus 67 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls 145 (244)
.++.|+|++|.+.|.+|..+..+++|+.|+++.|.+.|.+|..++.+++|+.|++++|++++.+|..++++++|+ |+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCcCCCCCCcc--cccCCCCccccCCCCCCCCCCCCCCC
Q 042227 146 YNDLTGPIPLTKQ--FQTFNDPSIYMGNADLCSPPLTTKCS 184 (244)
Q Consensus 146 ~N~l~~~~p~~~~--~~~l~~~~~~~~n~~~c~~~~~~~c~ 184 (244)
+|.++|.+|.... +..+.... +.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCc
Confidence 9999999996522 11222334 78999999987666674
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1e-17 Score=126.87 Aligned_cols=161 Identities=29% Similarity=0.384 Sum_probs=140.0
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
.+.++.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+|+ .+|.++..++.|+.|+++-|++. .+|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3557889999999999999 78888999999999999999998 89999999999999999999997 899999999999
Q ss_pred ceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCccccC
Q 042227 93 TGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMG 170 (244)
Q Consensus 93 ~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~~ 170 (244)
+.|++..|+++. .+|..|..++.|+.|+++.|.+. .+|..++++++|+ +.+..|.+-.-+-+...+..+.... ..|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh-iqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH-IQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh-ccc
Confidence 999999999864 68999999999999999999999 8999999999999 9999999874444444555555556 677
Q ss_pred CCCCCCCC
Q 042227 171 NADLCSPP 178 (244)
Q Consensus 171 n~~~c~~~ 178 (244)
|....-+|
T Consensus 183 nrl~vlpp 190 (264)
T KOG0617|consen 183 NRLTVLPP 190 (264)
T ss_pred ceeeecCh
Confidence 76544333
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.61 E-value=6.1e-17 Score=142.30 Aligned_cols=141 Identities=23% Similarity=0.190 Sum_probs=69.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|+++-.-+..|.+|++|+.|+|..|+|.-.---.|.++++|+.|.|..|.|...-...|..|.++++|+|+.|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 45566653333445556666666666666552112234444444444444444432222334444455555555555554
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~ 141 (244)
.-..++..+++|+.|+++.|.+....++.+...++|+.|||++|+|+...+..|..+..|+
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 4444555555555555555555555555555555555555555555543333333333333
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=2.2e-16 Score=140.01 Aligned_cols=166 Identities=27% Similarity=0.359 Sum_probs=133.2
Q ss_pred ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhcc
Q 042227 8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQ 87 (244)
Q Consensus 8 ~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 87 (244)
..+|.++..|.+|..+|++.|.+. .+|+.+-++++|+.|+|++|.|+ .+.-..+.+.+|++|++|+|+++ .+|.++.
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence 457888888899999999999988 88888888899999999999988 66666677788899999999988 8899999
Q ss_pred CCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc-cccCCC
Q 042227 88 NCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ-FQTFND 164 (244)
Q Consensus 88 ~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~-~~~l~~ 164 (244)
++++|+.|++..|+++- -+|..++++.+|+.+..++|.+. ..|+.+..+..|+ |.+++|.+. ..|...+ +..+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 99999999999988763 47888888888888888888888 7888888888888 888888886 4444433 344555
Q ss_pred CccccCCCCCCCCCC
Q 042227 165 PSIYMGNADLCSPPL 179 (244)
Q Consensus 165 ~~~~~~n~~~c~~~~ 179 (244)
.+ ...|+.+.-+|.
T Consensus 367 LD-lreNpnLVMPPK 380 (1255)
T KOG0444|consen 367 LD-LRENPNLVMPPK 380 (1255)
T ss_pred ee-ccCCcCccCCCC
Confidence 55 566776665554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=3.8e-17 Score=138.01 Aligned_cols=162 Identities=25% Similarity=0.351 Sum_probs=118.5
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 82 (244)
+|+++ .+|+.+..+.+|..+++.+|++. ..|+..-+++.|++||...|-++ .+|+.++.|.+|..|++.+|++. .+
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 45554 55566666666666677777666 34443444677777777777776 77778888888888888888886 55
Q ss_pred hhhccCCCCCceecCCCCCCCCCCCccc-CCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227 83 FVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ 160 (244)
Q Consensus 83 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~ 160 (244)
| .|..+..|.+++++.|.+. .+|+.. ..+.++..||+..|+++ +.|+.+.-+.+|+ +|+|+|.+++-.++...+
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl- 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL- 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence 6 7778888888888888776 455554 48888999999999999 8898888888898 999999999877776555
Q ss_pred cCCCCccccCCCC
Q 042227 161 TFNDPSIYMGNAD 173 (244)
Q Consensus 161 ~l~~~~~~~~n~~ 173 (244)
.+.-.. ..|||.
T Consensus 298 hL~~L~-leGNPl 309 (565)
T KOG0472|consen 298 HLKFLA-LEGNPL 309 (565)
T ss_pred eeeehh-hcCCch
Confidence 444444 567763
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=6.7e-16 Score=137.03 Aligned_cols=144 Identities=32% Similarity=0.484 Sum_probs=119.2
Q ss_pred CCcCC-ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCCCCC
Q 042227 3 RSLLN-GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 3 ~N~l~-~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~ 80 (244)
.|++. .-||+.+..|..|+.|||++|+++ +.|..+..-+++-+|+|++|+|. .+|. .|-+++.|-.||||+|++.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence 46664 568888999999999999999999 88998988899999999999998 6664 5668899999999999997
Q ss_pred chhhhccCCCCCceecCCCCCCC-------------------------CCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPS-------------------------GRIPENIGSLQKLETLDLSSNHLSGPIPPSMS 135 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~-------------------------~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 135 (244)
.+|..+..+..|+.|.+++|.+. ..+|..+..+.+|..+|+|.|.+. .+|+.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 78888888888888888888722 136667777788888888888888 7888888
Q ss_pred CCCceE-EEcccCCCc
Q 042227 136 SMTRLS-LNLSYNDLT 150 (244)
Q Consensus 136 ~l~~L~-L~ls~N~l~ 150 (244)
.+++|+ |++|+|.++
T Consensus 243 ~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhhheeccCcCcee
Confidence 888888 888888775
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=1.6e-15 Score=128.21 Aligned_cols=145 Identities=32% Similarity=0.421 Sum_probs=126.1
Q ss_pred CCCCcCCccCCcCCCCCCCccE-EEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSF-LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
+++|++. ++|..+..++.+.+ +.+++|.+. .+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|.
T Consensus 395 fskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 395 FSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred cccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 4667775 77877777666544 566666666 78888999999999999999997 89999999999999999999998
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
.+|+.+..+..++.+-.+.|++....|+.+++|.+|++||+.+|.+. .+|..++++.+|+ +++++|+|.
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88998888888888888889988766777999999999999999999 8999999999999 999999998
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-15 Score=127.04 Aligned_cols=98 Identities=23% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|..|.|+..-|..|+.+++|+.|||++|.|+.+-|+.|.++.+|..|-+-+ |+|+......|+++.+|+.|.+.-|++.
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 467888866677888899999999999999988888999888887775544 8888444456777766666666666665
Q ss_pred CchhhhccCCCCCceecCC
Q 042227 80 GELFVALQNCTAFTGFPEF 98 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~ 98 (244)
-...+.++.++++..|.+.
T Consensus 154 Cir~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLY 172 (498)
T ss_pred chhHHHHHHhhhcchhccc
Confidence 4444555555555444333
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=3.1e-13 Score=124.92 Aligned_cols=111 Identities=29% Similarity=0.406 Sum_probs=100.9
Q ss_pred CCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCC
Q 042227 44 LMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS 123 (244)
Q Consensus 44 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 123 (244)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|+++.|.++|.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCC-CceE-EEcccCCCcCCCC
Q 042227 124 NHLSGPIPPSMSSM-TRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 124 N~l~~~~p~~l~~l-~~L~-L~ls~N~l~~~~p 154 (244)
|++++.+|..+..+ ..+. +++.+|...|..|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999988764 3566 9999998766554
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=2.4e-14 Score=125.74 Aligned_cols=143 Identities=34% Similarity=0.497 Sum_probs=124.3
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
..|++. .+|..++++..|++|||+.|+++ ..|..+..|+ |+.|-+++|+++ .+|+.++.++.|..||.+.|.+. .
T Consensus 106 y~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-s 180 (722)
T KOG0532|consen 106 YHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-S 180 (722)
T ss_pred Hhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-h
Confidence 356664 67888899999999999999999 7888787765 899999999998 88999998899999999999997 7
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
+|..++.+.+|+.|.+..|++. .+|+.+..++ |..||+|.|+++ .+|-.|.+|..|+ |-|.+|++..+
T Consensus 181 lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 8888999999999999999888 5677777555 889999999999 8999999999999 99999999744
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=1e-14 Score=128.07 Aligned_cols=147 Identities=29% Similarity=0.472 Sum_probs=132.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|+.|+++ ++|..+..+..|+.+.++.|.+. .+|..+.++..|++||++.|.++ .+|..++.++ |+.|-+++|+++
T Consensus 82 lsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~- 156 (722)
T KOG0532|consen 82 LSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT- 156 (722)
T ss_pred ccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-
Confidence 5788886 88988888999999999999999 88999999999999999999998 8999999887 999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceEEEcccCCCcCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPL 155 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~L~ls~N~l~~~~p~ 155 (244)
.+|..++.+.+|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..|+-.+||+++|+++ .+|.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecch
Confidence 88999999999999999999988 67888999999999999999999 7898888777555999999998 4443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=2.5e-12 Score=120.07 Aligned_cols=139 Identities=22% Similarity=0.230 Sum_probs=84.7
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCcc---ccC-------------C-CCCCEEEccCCcCCccCCcccCC
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN---WEG-------------L-EELMVKDLSNNSLSGGIPASFCS 64 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~---~~~-------------l-~~L~~L~L~~n~l~~~~p~~~~~ 64 (244)
++|+++ .+|. .+++|+.|++++|++++ +|.. +.. + .+|+.|++++|+|+ .+|.....
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~ 363 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSE 363 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcc
Confidence 455555 3443 23566777777776663 2221 110 1 25777777777776 44432211
Q ss_pred -----------------CCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227 65 -----------------LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 65 -----------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
..+|+.|++++|++++ +|.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++
T Consensus 364 L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 364 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred cceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc
Confidence 1245566666666652 3322 2456677777777663 5543 245777888888888
Q ss_pred CCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227 128 GPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 128 ~~~p~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
.+|..+..++.|+ +++++|++++.+|.
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 7888888888888 99999999887665
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-13 Score=127.41 Aligned_cols=139 Identities=27% Similarity=0.388 Sum_probs=87.0
Q ss_pred cCCcCCCCCCCccEEEccCCcccccCCccccC--------------------------CCCCCEEEccCCcCCccCCccc
Q 042227 9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEG--------------------------LEELMVKDLSNNSLSGGIPASF 62 (244)
Q Consensus 9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~--------------------------l~~L~~L~L~~n~l~~~~p~~~ 62 (244)
-+|+....++.|++|+|..|.+. .+|+.+-. ++.|+.|++.+|.++...-..+
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 45666666777777777777776 44432110 1235556666666665544455
Q ss_pred CCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-
Q 042227 63 CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS- 141 (244)
Q Consensus 63 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~- 141 (244)
.++.+|+.|+|++|++.......+.++..|++|++++|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 56667777777777776444455666777777777777766 45666666666666666666666 555 566666676
Q ss_pred EEcccCCCcC
Q 042227 142 LNLSYNDLTG 151 (244)
Q Consensus 142 L~ls~N~l~~ 151 (244)
+|++.|+++.
T Consensus 457 lDlS~N~L~~ 466 (1081)
T KOG0618|consen 457 LDLSCNNLSE 466 (1081)
T ss_pred Eecccchhhh
Confidence 7777776653
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=1.7e-11 Score=120.75 Aligned_cols=149 Identities=19% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCC
Q 042227 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNC 89 (244)
Q Consensus 10 ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 89 (244)
+|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|..-..+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 444455555566666655443224442 4555566666665554333555555556666666665543333344332 34
Q ss_pred CCCceecCCCCCCCC--------------------CCCccc------------------------------CCCCCCCee
Q 042227 90 TAFTGFPEFITEPSG--------------------RIPENI------------------------------GSLQKLETL 119 (244)
Q Consensus 90 ~~L~~L~l~~n~l~~--------------------~~p~~~------------------------------~~l~~L~~L 119 (244)
++|+.|.+++|.... .+|..+ ...++|+.|
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred CCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 444444443332111 122110 012356666
Q ss_pred cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227 120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ 160 (244)
Q Consensus 120 ~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~ 160 (244)
++++|...+.+|..++++++|+ |++++|..-+.+|....+.
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~ 825 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE 825 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence 6666665556777777777777 7777765544555543333
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=6e-12 Score=117.78 Aligned_cols=134 Identities=23% Similarity=0.392 Sum_probs=72.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|+|+ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++.
T Consensus 227 Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 227 ANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 4567766 4565443 35677777777776 5555543 45677777777666 4555443 366666666666653
Q ss_pred chhhhcc-------------------CCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227 81 ELFVALQ-------------------NCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141 (244)
Q Consensus 81 ~~~~~l~-------------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~ 141 (244)
+|..+. -.++|+.|.++.|.++. +|..+. ++|+.|++++|+++ .+|..+. +.|+
T Consensus 298 -LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~ 370 (754)
T PRK15370 298 -LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTIT 370 (754)
T ss_pred -CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcC
Confidence 222211 01234444444444442 333332 45666666666665 4444332 3455
Q ss_pred -EEcccCCCc
Q 042227 142 -LNLSYNDLT 150 (244)
Q Consensus 142 -L~ls~N~l~ 150 (244)
|++++|.++
T Consensus 371 ~LdLs~N~Lt 380 (754)
T PRK15370 371 TLDVSRNALT 380 (754)
T ss_pred EEECCCCcCC
Confidence 666666555
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=1.2e-11 Score=115.65 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=40.9
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF 98 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 98 (244)
+|++|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 4555555555555 3443332 24555555555555 4454443 35666666666666 3454432 356666666
Q ss_pred CCCCC
Q 042227 99 ITEPS 103 (244)
Q Consensus 99 ~n~l~ 103 (244)
.|+++
T Consensus 292 ~N~Lt 296 (754)
T PRK15370 292 DNSIR 296 (754)
T ss_pred CCccc
Confidence 66655
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=1.9e-13 Score=115.49 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEE
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVK 47 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L 47 (244)
||+|.|+..-|+.|.+++.|..|-+.+ |+|+...-+.|.++..|+.|
T Consensus 98 LS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 98 LSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 688999888889999998888877776 88884434455554443333
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=5e-13 Score=113.68 Aligned_cols=140 Identities=29% Similarity=0.335 Sum_probs=87.1
Q ss_pred cCCCCCCCccEEEccCCcccccCCccccCCCC---CCEEEccCCcCCc----cCCcccCCC-CCCcEEEccCCCCCC---
Q 042227 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEE---LMVKDLSNNSLSG----GIPASFCSL-PSLVWLKLSKNDLSG--- 80 (244)
Q Consensus 12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~--- 80 (244)
..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34555677777777777776544444444444 7777777777662 223344555 677777777777763
Q ss_pred -chhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227 81 -ELFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 81 -~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
.++..+..+.+|+.|+++.|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+ |++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2344556666777777777776642 233344556777777777777632 233455666777 777777776
Q ss_pred C
Q 042227 151 G 151 (244)
Q Consensus 151 ~ 151 (244)
+
T Consensus 235 ~ 235 (319)
T cd00116 235 D 235 (319)
T ss_pred h
Confidence 4
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=5.2e-13 Score=109.65 Aligned_cols=134 Identities=25% Similarity=0.260 Sum_probs=112.7
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
.-...|+++|+++|.|+ .+.++..-+++++.|++++|.|. .+. .+..+++|+.|||++|.++ .+..+-.++.+++.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 34567999999999999 78888888999999999999998 443 4889999999999999997 66677788999999
Q ss_pred ecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCCCC
Q 042227 95 FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
|.+..|.+... ..++++-+|..||+++|+|... -...++++|.|+ +.+.+|++.+.+.
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99999987532 4578889999999999999721 234688999999 9999999986554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.23 E-value=7.3e-11 Score=110.34 Aligned_cols=68 Identities=28% Similarity=0.433 Sum_probs=45.3
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|+.|.++ .+|+.+. ++|+.|++++|+++ .+|.. .++|++|++++|+++ .+|..+ ++|+.|++++|.++
T Consensus 208 Ls~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~lp---~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 208 VGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVLP---PGLLELSIFSNPLT 275 (788)
T ss_pred cCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCcc---cccceeeccCCchh
Confidence 4567776 6777665 47888888888888 46642 467888888888887 555432 45555555555554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=4.4e-12 Score=98.49 Aligned_cols=109 Identities=30% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCCCCccEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhc-cCCCC
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWE-GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVAL-QNCTA 91 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~ 91 (244)
+.+..++++|+|++|.|+ .+ +.++ .+.+|+.|++++|.|+ .++ .+..++.|++|++++|+++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 345567888999999888 34 3455 5778889999999888 444 467788889999999988732 2222 23444
Q ss_pred CceecCCCCCCCCC-CCcccCCCCCCCeecCCCCCCC
Q 042227 92 FTGFPEFITEPSGR-IPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 92 L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
|+.|+++.|++... .-..+..+++|+.|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 44444444444321 0122333444444444444443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=1e-12 Score=111.77 Aligned_cols=150 Identities=24% Similarity=0.270 Sum_probs=110.5
Q ss_pred CCCCcCCccCCcCCCCCCC---ccEEEccCCcccc----cCCccccCC-CCCCEEEccCCcCCc----cCCcccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKN---FSFLDLSNNILSG----EIPSNWEGL-EELMVKDLSNNSLSG----GIPASFCSLPSL 68 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~---L~~L~l~~N~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~----~~p~~~~~l~~L 68 (244)
|++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++ .++..+..+++|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 4567776555555555544 9999999999883 233455666 899999999999983 234566777899
Q ss_pred cEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCCCccccC-----
Q 042227 69 VWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGPIPPSMS----- 135 (244)
Q Consensus 69 ~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~----- 135 (244)
+.|++++|.+++. ++..+...++|+.|+++.|.+++. ++..+..+++|++|++++|.+++.....+.
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 9999999999853 445566778999999999988743 334567788999999999999853222222
Q ss_pred CCCceE-EEcccCCCc
Q 042227 136 SMTRLS-LNLSYNDLT 150 (244)
Q Consensus 136 ~l~~L~-L~ls~N~l~ 150 (244)
..+.|+ +++++|.++
T Consensus 248 ~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 248 PNISLLTLSLSCNDIT 263 (319)
T ss_pred cCCCceEEEccCCCCC
Confidence 236889 999999886
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=1.5e-12 Score=119.95 Aligned_cols=128 Identities=29% Similarity=0.313 Sum_probs=89.7
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCCCCCchhhhccCCCCCcee
Q 042227 17 MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGF 95 (244)
Q Consensus 17 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 95 (244)
++.|+.|++.+|.+++..-+.+.++.+|++|+|++|++. .+| ..+.++..|+.|+||+|+++ .+|..+.+++.|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 556777777777777655556677777777777777776 555 45667777777777777777 677777777777777
Q ss_pred cCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCC
Q 042227 96 PEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND 148 (244)
Q Consensus 96 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~ 148 (244)
....|.+. .+| .+.++++|+.+|+|.|+++...-..-...++|+ ||+++|.
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777776 455 577777777777777777643222222336777 7777776
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=1.9e-11 Score=107.32 Aligned_cols=145 Identities=37% Similarity=0.523 Sum_probs=85.0
Q ss_pred CCcCCccCCcCCCCCC-CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 3 RSLLNGTIPPSMSEMK-NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
+|.++ .+|+....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|...+.+++|+.|++++|+++ .
T Consensus 125 ~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~ 200 (394)
T COG4886 125 NNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200 (394)
T ss_pred Ccccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-c
Confidence 45554 4555555553 7777777777777 55556677777777777777776 56655556677777777777776 4
Q ss_pred hhhhccCCCCCceecCCCCCCCCCC-----------------------CcccCCCCCCCeecCCCCCCCCCCccccCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRI-----------------------PENIGSLQKLETLDLSSNHLSGPIPPSMSSMT 138 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~-----------------------p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 138 (244)
+|........|+.+.++.|.+. .. +..++.++++++|++++|+++ .++. ++.+.
T Consensus 201 l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~ 277 (394)
T COG4886 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT 277 (394)
T ss_pred CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccC
Confidence 5554445555666666666311 12 334444555555555555555 3333 45555
Q ss_pred ceE-EEcccCCCcCCCC
Q 042227 139 RLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 139 ~L~-L~ls~N~l~~~~p 154 (244)
+++ +++++|.+....|
T Consensus 278 ~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 278 NLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCEEeccCccccccch
Confidence 555 5555555554444
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=1.9e-11 Score=107.30 Aligned_cols=130 Identities=33% Similarity=0.428 Sum_probs=93.4
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCC---
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND--- 77 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~--- 77 (244)
+++|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++++|+++ .+|........|+++.+++|.
T Consensus 147 l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~ 223 (394)
T COG4886 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE 223 (394)
T ss_pred ccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee
Confidence 3556665 55566778888888888888888 56655557778888888888887 666654444556666666662
Q ss_pred --------------------CCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCC
Q 042227 78 --------------------LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS 136 (244)
Q Consensus 78 --------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 136 (244)
+. .++..+..+..++.|+++.|.++. ++. ++.+.+++.|++++|.++...|.....
T Consensus 224 ~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhcc
Confidence 22 124667777888889999998884 333 889999999999999999665554443
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.12 E-value=3.2e-10 Score=111.83 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceec
Q 042227 17 MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP 96 (244)
Q Consensus 17 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 96 (244)
..+|+.|++++|++. .++..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+.++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 344555555555554 3444445555555555554432224442 44455555555555544445555555555555555
Q ss_pred CCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 97 EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
++.|.....+|..+ ++++|+.|++++|.....+|.. ..+|+ |++++|.+.
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE 738 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence 55544333444433 4555555555555433334432 23455 666666654
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=7.3e-11 Score=75.77 Aligned_cols=61 Identities=44% Similarity=0.627 Sum_probs=53.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCC
Q 042227 18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 78 (244)
++|++|++++|+++...++.|.++++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999966667889999999999999999866678899999999999999875
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1e-10 Score=90.82 Aligned_cols=122 Identities=25% Similarity=0.309 Sum_probs=42.2
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccC-CCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCC
Q 042227 24 DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC-SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEP 102 (244)
Q Consensus 24 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l 102 (244)
.+..+.|+ ..+. +.+..+++.|+|++|.|+ .+. .++ .+.+|+.|++++|.++.. +.+..++.|+.|.++.|.+
T Consensus 3 ~lt~~~i~-~~~~-~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 3 RLTANMIE-QIAQ-YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS--
T ss_pred cccccccc-cccc-cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC
Confidence 34555666 4443 455668999999999998 453 455 588999999999999843 3577899999999999999
Q ss_pred CCCCCccc-CCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCC
Q 042227 103 SGRIPENI-GSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 103 ~~~~p~~~-~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
+. +.+.+ ..+++|++|++++|+|... .-..++.++.|+ +++.+|+++..
T Consensus 77 ~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 77 SS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred Cc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 85 44334 4689999999999999742 224677889999 99999999743
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1e-10 Score=96.31 Aligned_cols=125 Identities=26% Similarity=0.270 Sum_probs=104.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
||+|.|+ .+..++.-++.++.|+++.|.+. .+. .+..+++|+.|||++|.++ .+-.+-.++.++++|.|+.|.+..
T Consensus 291 LS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 291 LSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh
Confidence 5788886 67777888999999999999999 443 4888999999999999998 677777789999999999999852
Q ss_pred chhhhccCCCCCceecCCCCCCCCC-CCcccCCCCCCCeecCCCCCCCCCCcc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGR-IPENIGSLQKLETLDLSSNHLSGPIPP 132 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~ 132 (244)
-..+.++=+|..|++..|++... -...+++++.|+++.+.+|.+. .+++
T Consensus 367 --LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 367 --LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred --hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 34577788899999999998642 2356899999999999999999 4554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.4e-09 Score=69.75 Aligned_cols=61 Identities=44% Similarity=0.584 Sum_probs=43.9
Q ss_pred CCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecC
Q 042227 42 EELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDL 121 (244)
Q Consensus 42 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 121 (244)
++|+.|++++|+++...++.|..+++|++|++++|+++... |+.|.++++|++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~------------------------~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP------------------------PDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE------------------------TTTTTTSTTESEEEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC------------------------HHHHcCCCCCCEEeC
Confidence 46788888888888555567888888888888888887433 345666666666666
Q ss_pred CCCCC
Q 042227 122 SSNHL 126 (244)
Q Consensus 122 s~N~l 126 (244)
++|+|
T Consensus 57 ~~N~l 61 (61)
T PF13855_consen 57 SNNNL 61 (61)
T ss_dssp TSSSB
T ss_pred cCCcC
Confidence 66654
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.9e-09 Score=88.88 Aligned_cols=115 Identities=29% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCCCCccEEEccCCcccccCC--ccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCCCCCc-hhhhccC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIP--SNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKNDLSGE-LFVALQN 88 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~ 88 (244)
....+++++.|||+.|-+....+ .....+++|+.|+++.|++.--.. ..-..++.|+.|.++.+.+++. +...+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34568889999999998875322 345678889999999988862111 1123567788888888888753 3334555
Q ss_pred CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227 89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
+++|..|+++.|.....-......++.|++|||++|++.
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 677777777776422111122333445555555555544
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.54 E-value=2.4e-09 Score=78.65 Aligned_cols=104 Identities=29% Similarity=0.453 Sum_probs=57.7
Q ss_pred CccEEEccCCcccccCCcc---ccCCCCCCEEEccCCcCCccCCcccC-CCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 19 NFSFLDLSNNILSGEIPSN---WEGLEELMVKDLSNNSLSGGIPASFC-SLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
.+..++|+.+++. .+++. +.....|+..++++|.+. .+|..|. +.+.+++|++++|+++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis--------------- 90 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS--------------- 90 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------------
Confidence 3455667776665 34433 333445555577777776 4554443 3456777777777776
Q ss_pred ecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 95 FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
.+|..+..++.|+.|+++.|.+. ..|..+..+.++. |+..+|.+.
T Consensus 91 ----------dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 91 ----------DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ----------hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34444555555555555555555 4455454455555 555555443
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=6e-10 Score=101.05 Aligned_cols=128 Identities=25% Similarity=0.171 Sum_probs=89.0
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF 98 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 98 (244)
.|.+.+++.|++. .+..++.-++.|+.|+|++|+++ .. +.+..++.|++|||++|.++ .+|..-..-.+|..|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4666777778777 66677777778888888888876 22 26777788888888888876 444332222237777787
Q ss_pred CCCCCCCCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCC
Q 042227 99 ITEPSGRIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
+|.++.. ..+.++.+|+.||+++|-+.+- --..++.+..|+ |.+.+|++.+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 7776632 3477888999999999988742 112355667788 89999988653
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=1.5e-09 Score=98.49 Aligned_cols=157 Identities=23% Similarity=0.261 Sum_probs=111.1
Q ss_pred CcCCCCCCCccEEEccCCcccccC---C--ccccC--------------------------CCCCCEEEccCCcCCccCC
Q 042227 11 PPSMSEMKNFSFLDLSNNILSGEI---P--SNWEG--------------------------LEELMVKDLSNNSLSGGIP 59 (244)
Q Consensus 11 p~~l~~l~~L~~L~l~~N~l~~~~---p--~~~~~--------------------------l~~L~~L~L~~n~l~~~~p 59 (244)
|-.+..+.+|++|.+.++.+.... + ..+.. .-.|...+.++|.+. .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 445677889999999998776310 0 00000 013566677778877 667
Q ss_pred cccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcc-cCCCCCCCeecCCCCCCCCCCccccCCCC
Q 042227 60 ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPEN-IGSLQKLETLDLSSNHLSGPIPPSMSSMT 138 (244)
Q Consensus 60 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 138 (244)
+++.-++.|+.|+|++|+++.. +.+..+++|++|++++|.+. .+|.. ...+. |+.|.+++|.++ .+ ..+.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhh
Confidence 7788889999999999999743 38889999999999999987 44542 23344 999999999998 33 3478899
Q ss_pred ceE-EEcccCCCcCCC--CCCcccccCCCCccccCCCCCC
Q 042227 139 RLS-LNLSYNDLTGPI--PLTKQFQTFNDPSIYMGNADLC 175 (244)
Q Consensus 139 ~L~-L~ls~N~l~~~~--p~~~~~~~l~~~~~~~~n~~~c 175 (244)
+|+ ||+++|-+++.- ...+.+..+.... +.|||.-|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~-LeGNPl~c 293 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLW-LEGNPLCC 293 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHh-hcCCcccc
Confidence 999 999999987642 2233344444444 68888766
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.2e-08 Score=86.16 Aligned_cols=137 Identities=24% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCCCCccEEEccCCcccccCCcc-ccCCCCCCEEEccCCcCCcc-CCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGG-IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA 91 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 91 (244)
...|++|+.|+++.|++..-.... -..++.|+.|.++.|.++.. +-.....+|+|+.|+|..|.....-.....-+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 345778888888888776322111 11356677777777776621 1122334566666666666422222223333445
Q ss_pred CceecCCCCCCCCCC-CcccCCCCCCCeecCCCCCCCCC-Cccc-----cCCCCceE-EEcccCCCc
Q 042227 92 FTGFPEFITEPSGRI-PENIGSLQKLETLDLSSNHLSGP-IPPS-----MSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 92 L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~-~p~~-----l~~l~~L~-L~ls~N~l~ 150 (244)
|+.|+++.|++.... -...+.++.|+.|+++.+.++.. .|+. ....+.|+ |+++.|++.
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 555666665544211 12244555555555555555421 1221 22344555 555555553
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=2.4e-08 Score=83.70 Aligned_cols=138 Identities=22% Similarity=0.205 Sum_probs=105.4
Q ss_pred CCCCCCccEEEccCCcccccCCcc----ccCCCCCCEEEccCCcCCc----c---------CCcccCCCCCCcEEEccCC
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSN----WEGLEELMVKDLSNNSLSG----G---------IPASFCSLPSLVWLKLSKN 76 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~----~---------~p~~~~~l~~L~~L~Ls~N 76 (244)
+...++|++|+||+|.|....+.. +..+..|++|+|.+|.+.. . .......-+.|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 456679999999999988554433 4567899999999999861 1 1122445578999999999
Q ss_pred CCCC----chhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCC----CCccccCCCCceE-EE
Q 042227 77 DLSG----ELFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSG----PIPPSMSSMTRLS-LN 143 (244)
Q Consensus 77 ~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~----~~p~~l~~l~~L~-L~ 143 (244)
++.. .+...+...+.|+.+.+..|.+... +...+..+++|+.|||..|.++. .+...+..++.|+ ++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 9974 3556788889999999999886532 22347789999999999999973 2455677888999 99
Q ss_pred cccCCCcC
Q 042227 144 LSYNDLTG 151 (244)
Q Consensus 144 ls~N~l~~ 151 (244)
++++.+..
T Consensus 248 l~dcll~~ 255 (382)
T KOG1909|consen 248 LGDCLLEN 255 (382)
T ss_pred cccccccc
Confidence 99998863
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=5.4e-08 Score=86.20 Aligned_cols=129 Identities=26% Similarity=0.309 Sum_probs=71.7
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 93 (244)
+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+. +. .+..++.|+.|++++|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 555666677777777766 333335566667777777776662 22 244555566777777766521 2333366666
Q ss_pred eecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 94 GFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 94 ~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
.+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+. +++..|.++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 66666666553322 1 3555666666666666652 22233333444 555556554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=1.6e-07 Score=83.28 Aligned_cols=140 Identities=26% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
.+|+|... ...+..+++|++|++++|.|+... .+..++.|+.|++++|.|+ .+ +.+..++.|+.+++++|++...
T Consensus 103 ~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 103 YDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred cccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhcccCCcchhhhh
Confidence 34555422 222556777777777777777432 2455666777777777776 22 2344567777777777777643
Q ss_pred hh-hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCc--eE-EEcccCCCcC
Q 042227 82 LF-VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR--LS-LNLSYNDLTG 151 (244)
Q Consensus 82 ~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~--L~-L~ls~N~l~~ 151 (244)
-+ . ...+.+++.+.+..|.+.. ...+..+..+..+++..|.++. +-. +..+.. |+ +++++|++..
T Consensus 178 e~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~-~~~-l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 178 ENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK-LEG-LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred hhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee-ccC-cccchhHHHHHHhcccCcccc
Confidence 33 2 4566677777777776542 2334444555555777777762 211 222222 66 7777777763
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=7.7e-07 Score=52.88 Aligned_cols=36 Identities=42% Similarity=0.621 Sum_probs=17.4
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEEccCCcCC
Q 042227 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS 55 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 55 (244)
+|++|++++|+|+ .+|..+.++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.26 E-value=4.3e-07 Score=86.89 Aligned_cols=105 Identities=30% Similarity=0.263 Sum_probs=55.1
Q ss_pred CccEEEccCCc--ccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceec
Q 042227 19 NFSFLDLSNNI--LSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP 96 (244)
Q Consensus 19 ~L~~L~l~~N~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 96 (244)
.|++|-+..|. +.....+.|..++.|.+||+++|.=-+.+|+.++.+-+|++|+++++.++ .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555553 33122233455555666666554433455555555556666666655555 5555555555555555
Q ss_pred CCCCCCCCCCCcccCCCCCCCeecCCCC
Q 042227 97 EFITEPSGRIPENIGSLQKLETLDLSSN 124 (244)
Q Consensus 97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N 124 (244)
+..+.....+|.....+++|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 5555443334444444555555555443
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.8e-06 Score=51.32 Aligned_cols=37 Identities=41% Similarity=0.614 Sum_probs=30.5
Q ss_pred CCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 42 EELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 42 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
++|++|++++|+|+ .+|..+.+|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47899999999998 67777889999999999999887
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.13 E-value=1.7e-06 Score=82.79 Aligned_cols=131 Identities=25% Similarity=0.217 Sum_probs=106.8
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc--CCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS--LSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
.+....+...+-+|.+. .++... ..++|++|-+..|. +....++.|..++.|+.|||++|.=-+.+|..++.+.+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34467788889999887 555543 34589999999996 553444568889999999999988778999999999999
Q ss_pred ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCC
Q 042227 93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND 148 (244)
Q Consensus 93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~ 148 (244)
++|+++...+. .+|..+++++.|.+||+..+.....+|.....+.+|+ +.+....
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999998 7899999999999999999876656677777788888 7765554
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=4.2e-07 Score=76.38 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCC--c--cCCcccCCCCCCcEEEccCCCCCC----ch
Q 042227 15 SEMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLS--G--GIPASFCSLPSLVWLKLSKNDLSG----EL 82 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~--~--~~p~~~~~l~~L~~L~Ls~N~l~~----~~ 82 (244)
+.-+.|+++....|++... +...|...+.|+.+.+..|.|. | .+...+..+++|+.|||.+|.++. .+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456778888888877742 2234556678888888888775 1 233557778888888888888874 34
Q ss_pred hhhccCCCCCceecCCCCCCCCCCCc----cc-CCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227 83 FVALQNCTAFTGFPEFITEPSGRIPE----NI-GSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 83 ~~~l~~l~~L~~L~l~~n~l~~~~p~----~~-~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
...+..+++|+.|+++.|.+...-.. .+ ...++|+.|.+.+|.++.. +...+...+.|. |++++|.+.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 56677778888888888877643221 12 3467888888888888732 333455677888 888888883
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=2.3e-07 Score=68.43 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=88.5
Q ss_pred CCCCCCccEEEccCCcccccCCccccC-CCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
+....+|+..++++|.+. .+|+.|.. .+.++.|++++|.|+ .+|..+..|+.|+.|+++.|.+. ..|+.+..+.++
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 445677888899999999 67766654 458999999999998 78988999999999999999998 778888889999
Q ss_pred ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227 93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS 135 (244)
Q Consensus 93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 135 (244)
..|+...|.+. .+|-.+-.-...-..++.++.+.+.-+.-+.
T Consensus 126 ~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 126 DMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred HHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 99998888766 3333222122233345566777765554433
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=9.2e-06 Score=63.69 Aligned_cols=125 Identities=19% Similarity=0.107 Sum_probs=73.2
Q ss_pred cEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227 21 SFLDLSNNILSGEIPSNWE-GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI 99 (244)
Q Consensus 21 ~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 99 (244)
+.+++++.++.. +-. ++ .+.+...+||++|.+. .+ ..|..++.|.+|.+++|+|+...|.--..+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~-ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPV-IEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccc-hhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 455566555541 111 11 2234556667766664 22 3455666677777777777655555555556666666666
Q ss_pred CCCCCC-CCcccCCCCCCCeecCCCCCCCCCC---ccccCCCCceE-EEcccCCC
Q 042227 100 TEPSGR-IPENIGSLQKLETLDLSSNHLSGPI---PPSMSSMTRLS-LNLSYNDL 149 (244)
Q Consensus 100 n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~---p~~l~~l~~L~-L~ls~N~l 149 (244)
|.+... .-+.+..++.|++|.+-+|.++..- --.+..+++|+ ||++.-..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 665421 1123566788888888888887321 12466788888 88776543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=3.7e-06 Score=69.68 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=29.5
Q ss_pred cCCCCCCCeecCCCCCCCC-CCccccCCCCceE-EEcccCCCcCCC
Q 042227 110 IGSLQKLETLDLSSNHLSG-PIPPSMSSMTRLS-LNLSYNDLTGPI 153 (244)
Q Consensus 110 ~~~l~~L~~L~ls~N~l~~-~~p~~l~~l~~L~-L~ls~N~l~~~~ 153 (244)
+..++.+..|+|+.|+|.. .--+.+..++.|+ +.+++|++....
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 4455666677777777752 1234567778888 888888886543
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.5e-05 Score=62.51 Aligned_cols=108 Identities=23% Similarity=0.235 Sum_probs=82.3
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch-hhhccCCCCCcee
Q 042227 17 MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL-FVALQNCTAFTGF 95 (244)
Q Consensus 17 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L 95 (244)
+.+...+||++|.+. .. +.|..++.|.+|.+++|+|+..-|..-..+++|+.|.|.+|.+.... -+.+..+++|+.|
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 346678999999988 33 35788999999999999999555655556788999999999997422 2457788999999
Q ss_pred cCCCCCCCCCCC---cccCCCCCCCeecCCCCCC
Q 042227 96 PEFITEPSGRIP---ENIGSLQKLETLDLSSNHL 126 (244)
Q Consensus 96 ~l~~n~l~~~~p---~~~~~l~~L~~L~ls~N~l 126 (244)
.+-+|..+..-- -.+..+++|+.||+++=..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999888663211 1356789999999876433
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1e-05 Score=75.77 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=91.1
Q ss_pred CCccEEEccCCccc-ccCCcccc-CCCCCCEEEccCCcCC-ccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 18 KNFSFLDLSNNILS-GEIPSNWE-GLEELMVKDLSNNSLS-GGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 18 ~~L~~L~l~~N~l~-~~~p~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
.+|++|++++...- ..+|..++ .+|.|+.|.+.+-.+. +.+.....++|+|..||+|+.+++.. ..+.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46888888886432 23343333 4789999998886664 22334556788999999999988744 67888888888
Q ss_pred ecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCC--c----cccCCCCceE-EEcccCCCcCC
Q 042227 95 FPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPI--P----PSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 95 L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~--p----~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
|.+.+=.+.. ..-..+.+|++|+.||+|..+..... . +.-..+|.|+ ||.|+..+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8877655542 12234667999999999987765321 1 1234588999 99998877644
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.50 E-value=3e-05 Score=63.66 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=91.7
Q ss_pred CCCCCCCccEEEccCCcccccCCcc----ccCCCCCCEEEccCCcCCcc----CCcc---------cCCCCCCcEEEccC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIPSN----WEGLEELMVKDLSNNSLSGG----IPAS---------FCSLPSLVWLKLSK 75 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~----~p~~---------~~~l~~L~~L~Ls~ 75 (244)
.+.++++|+..+||+|.|....|+. ++.-+.|.+|.+++|.+... +... ..+-|.|+++...+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3567899999999999988766653 45567899999999988621 1111 22347788999999
Q ss_pred CCCCCc----hhhhccCCCCCceecCCCCCCCCCC-----CcccCCCCCCCeecCCCCCCCC----CCccccCCCCceE-
Q 042227 76 NDLSGE----LFVALQNCTAFTGFPEFITEPSGRI-----PENIGSLQKLETLDLSSNHLSG----PIPPSMSSMTRLS- 141 (244)
Q Consensus 76 N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----p~~~~~l~~L~~L~ls~N~l~~----~~p~~l~~l~~L~- 141 (244)
|++..- ....+..-..|+.+.+..|.+.-.- -..+..+++|+.||+..|.++- .+...+..++.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 988632 1223333457777888877754220 0123457888999999998872 2334456667777
Q ss_pred EEcccCCCc
Q 042227 142 LNLSYNDLT 150 (244)
Q Consensus 142 L~ls~N~l~ 150 (244)
|.+..+-++
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 888777765
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00033 Score=61.40 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=41.9
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCC-CCCCchhh
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKN-DLSGELFV 84 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~ 84 (244)
+..+.+++.|++++|.++ .+|. + -.+|+.|.+++ +.++ .+|+.+. ++|+.|++++| .+. .+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc
Confidence 344678889999988888 5562 2 24688888877 3444 6666553 57888888887 443 4443
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.35 E-value=0.0007 Score=49.48 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=51.9
Q ss_pred cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA 91 (244)
Q Consensus 12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 91 (244)
..|.+.++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|.++++|+.+.+.+ .+.......+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3566777888888875 455455567788888888888775 5534445677777888888865 443233344455555
Q ss_pred CceecCCCCCCCCCCCcccCCCCCCCeecCCC
Q 042227 92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSS 123 (244)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 123 (244)
|+.+.+..+ +...-...|.+. .|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555555432 221222334444 555555543
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=0.00012 Score=59.62 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=28.8
Q ss_pred CCCCCCcEEEccCC--CCCCchhhhccCCCCCceecCCCCCCCC--CCCcccCCCCCCCeecCCCCCCC
Q 042227 63 CSLPSLVWLKLSKN--DLSGELFVALQNCTAFTGFPEFITEPSG--RIPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 63 ~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
..|++|+.|.++.| .+.+.++.....+++|+++.++.|++.. .+ ..+..+++|..||+.++..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCcc
Confidence 34444444444444 3333333333334444444444444331 11 12344555666666666554
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.0002 Score=67.29 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCCCccEEEccCCcccc-cCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC-chhhhccCCCCCc
Q 042227 16 EMKNFSFLDLSNNILSG-EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG-ELFVALQNCTAFT 93 (244)
Q Consensus 16 ~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~ 93 (244)
-||.|+.|.+++-.+.. .+-.-..++++|..||+++.+++ .+ ..+..+++|+.|.+.+=.+.. ..-..+..+++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 37999999999977653 22344567899999999999998 33 678899999999998877764 3445788899999
Q ss_pred eecCCCCCCCCCC--C----cccCCCCCCCeecCCCCCCCCCCc
Q 042227 94 GFPEFITEPSGRI--P----ENIGSLQKLETLDLSSNHLSGPIP 131 (244)
Q Consensus 94 ~L~l~~n~l~~~~--p----~~~~~l~~L~~L~ls~N~l~~~~p 131 (244)
.|+++........ . +.-..+++|+.||.|++.+...+-
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 9999987654321 1 123458999999999998875443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.25 E-value=0.00085 Score=58.88 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCC-cccccCCccccCCCCCCEEEccCC-cCCccCCcccCCCCCCcEEEccCCCC
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNN-ILSGEIPSNWEGLEELMVKDLSNN-SLSGGIPASFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l 78 (244)
++|.++ .+|. -..+|++|+++++ .++ .+|+.+. .+|+.|++++| .+. .+|. +|+.|+++.+..
T Consensus 60 s~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 60 KDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSAT 124 (426)
T ss_pred CCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCC
Confidence 445554 4452 1246999999874 554 6776553 68999999998 565 5654 466777776654
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00032 Score=57.11 Aligned_cols=113 Identities=22% Similarity=0.252 Sum_probs=76.8
Q ss_pred cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCC--cCCccCCcccCCCCCCcEEEccCCCCCC-chhhh
Q 042227 9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNN--SLSGGIPASFCSLPSLVWLKLSKNDLSG-ELFVA 85 (244)
Q Consensus 9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~ 85 (244)
.+......+..|+.|.+.+..++. + ..+..+++|+.|.++.| .+.+.++-....+++|++++++.|+++. .--..
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred Ccccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 355555567778888888877773 2 34667889999999999 6666666666777999999999999973 11133
Q ss_pred ccCCCCCceecCCCCCCCCCC---CcccCCCCCCCeecCCC
Q 042227 86 LQNCTAFTGFPEFITEPSGRI---PENIGSLQKLETLDLSS 123 (244)
Q Consensus 86 l~~l~~L~~L~l~~n~l~~~~---p~~~~~l~~L~~L~ls~ 123 (244)
+..+.+|..|++..|..++.- -..|.-+++|++||-..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 455666777888777655411 11255567777776544
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.00029 Score=58.66 Aligned_cols=84 Identities=24% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCCCcEEEccCCCCCC--chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE
Q 042227 65 LPSLVWLKLSKNDLSG--ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS 141 (244)
Q Consensus 65 l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~ 141 (244)
.+.++.+||.+|.|+. .+...+.+++.|++|+++.|.++..|-..-..+.+|++|-|.+..+... ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666777776653 4455566667777777777666543322113445677777777666532 223345566666
Q ss_pred -EEcccCC
Q 042227 142 -LNLSYND 148 (244)
Q Consensus 142 -L~ls~N~ 148 (244)
++++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 6666663
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=4.6e-05 Score=62.75 Aligned_cols=101 Identities=25% Similarity=0.150 Sum_probs=67.8
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchh-hhccCCCCCce
Q 042227 16 EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF-VALQNCTAFTG 94 (244)
Q Consensus 16 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~ 94 (244)
++.+.+.|++-++.+.++ .....++.|++|.|+-|+|+ .+ ..+..+++|++|+|..|.|..... ..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356677788888887743 24567888888888888887 33 346778888888888888874322 34666777777
Q ss_pred ecCCCCCCCCCCCcc-----cCCCCCCCeec
Q 042227 95 FPEFITEPSGRIPEN-----IGSLQKLETLD 120 (244)
Q Consensus 95 L~l~~n~l~~~~p~~-----~~~l~~L~~L~ 120 (244)
|.+..|.-.|.-+.. +.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777655543322 33456666555
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=1.9e-05 Score=65.60 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=54.1
Q ss_pred CccEEEccCCcccc-cCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC-CCCC-chhhhccCCCCCcee
Q 042227 19 NFSFLDLSNNILSG-EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN-DLSG-ELFVALQNCTAFTGF 95 (244)
Q Consensus 19 ~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~~~~l~~l~~L~~L 95 (244)
.|++|||+...|+. .+...+..+.+|+-|.+.++.+.+.+...+.+-.+|+.|+++.+ .++. ...-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 37777777777663 22344566777777777777777666666666777777777764 3332 222345667777777
Q ss_pred cCCCCCC
Q 042227 96 PEFITEP 102 (244)
Q Consensus 96 ~l~~n~l 102 (244)
+++.+.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 7776663
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.00021 Score=59.55 Aligned_cols=65 Identities=23% Similarity=0.117 Sum_probs=36.6
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCc-cCCcccCCCCCCcEEEccCCCCC
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSG-GIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
..+.+|+.|.+.++++.+.+-..+.+-.+|..|+++.+. ++. ...-.+.+++.|+.|+++.+.+.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 445666666777777666555556666666666666543 321 11122445566666666666554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.39 E-value=0.011 Score=43.12 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred CcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227 11 PPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCT 90 (244)
Q Consensus 11 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 90 (244)
...|.++++|+.+.+.++ +.......|.++.+++.+.+.+ .+.......|..+++|+.+++..+ +.......+.++
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 345778889999999886 6645556788888999999976 444244467778999999999876 654555667777
Q ss_pred CCceecCCCCCCCCCCCcccCCCCCC
Q 042227 91 AFTGFPEFITEPSGRIPENIGSLQKL 116 (244)
Q Consensus 91 ~L~~L~l~~n~l~~~~p~~~~~l~~L 116 (244)
+|+.+.+.. .+...-...|.++++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 888887654 3332223445555554
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0018 Score=32.13 Aligned_cols=19 Identities=47% Similarity=0.838 Sum_probs=9.9
Q ss_pred ccEEEccCCcccccCCcccc
Q 042227 20 FSFLDLSNNILSGEIPSNWE 39 (244)
Q Consensus 20 L~~L~l~~N~l~~~~p~~~~ 39 (244)
|++||+++|+++ .+|+.|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0021 Score=31.90 Aligned_cols=21 Identities=48% Similarity=0.706 Sum_probs=12.5
Q ss_pred CCCEEEccCCcCCccCCcccCC
Q 042227 43 ELMVKDLSNNSLSGGIPASFCS 64 (244)
Q Consensus 43 ~L~~L~L~~n~l~~~~p~~~~~ 64 (244)
+|++||+++|+++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555543
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.80 E-value=0.0051 Score=50.86 Aligned_cols=154 Identities=21% Similarity=0.181 Sum_probs=104.2
Q ss_pred CCCCcCCccCCcCC----CCCCCccEEEccCCcccccCCcccc-------------CCCCCCEEEccCCcCCccCC----
Q 042227 1 LSRSLLNGTIPPSM----SEMKNFSFLDLSNNILSGEIPSNWE-------------GLEELMVKDLSNNSLSGGIP---- 59 (244)
Q Consensus 1 Ls~N~l~~~ip~~l----~~l~~L~~L~l~~N~l~~~~p~~~~-------------~l~~L~~L~L~~n~l~~~~p---- 59 (244)
||.|-|....|+.+ +.-+.|.+|.+++|.+.......++ .-+.|++.....|++. ..|
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~ 177 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELS 177 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHH
Confidence 68899987777654 5568899999999988733222222 3478999999999987 222
Q ss_pred -cccCCCCCCcEEEccCCCCCCc-----hhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCC
Q 042227 60 -ASFCSLPSLVWLKLSKNDLSGE-----LFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGP 129 (244)
Q Consensus 60 -~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~ 129 (244)
..+..-.+|+++.+.+|.|.-. ....+..+.+|+.|++..|.++.. +...+...+.|+.|.+..+-++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 1233346889999999988632 234567788999999999987742 223455667788888888887643
Q ss_pred Ccc----ccC--CCCceE-EEcccCCCcCCCCC
Q 042227 130 IPP----SMS--SMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 130 ~p~----~l~--~l~~L~-L~ls~N~l~~~~p~ 155 (244)
-.. .|. ..++|. |...+|.+.+.+-.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence 222 122 246677 77888877665433
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.39 E-value=0.00025 Score=57.10 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=62.6
Q ss_pred cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCC
Q 042227 37 NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL 116 (244)
Q Consensus 37 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 116 (244)
.+......+.||++.|++. .+...|..++.|..|+++.|++. ..|..+..+..++.+....|..+ ..|..+++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445567778888888876 56667777788888888888876 56666666666666666666555 467777777888
Q ss_pred CeecCCCCCCC
Q 042227 117 ETLDLSSNHLS 127 (244)
Q Consensus 117 ~~L~ls~N~l~ 127 (244)
+.+++-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88887777766
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.0015 Score=54.08 Aligned_cols=81 Identities=23% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc--ccCCCCCCcEEEccCCCCCCchhh-----hc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA--SFCSLPSLVWLKLSKNDLSGELFV-----AL 86 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~-----~l 86 (244)
..+|+.|++|.|+-|+|+..- .+..+++|+.|+|..|.|. .+.+ -+.++++|+.|.|..|.-.|.-+. .+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 357899999999999999543 4678999999999999998 4443 467899999999999988765432 35
Q ss_pred cCCCCCceecC
Q 042227 87 QNCTAFTGFPE 97 (244)
Q Consensus 87 ~~l~~L~~L~l 97 (244)
.-+++|+.|+-
T Consensus 114 R~LPnLkKLDn 124 (388)
T KOG2123|consen 114 RVLPNLKKLDN 124 (388)
T ss_pred HHcccchhccC
Confidence 56777777653
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.50 E-value=0.024 Score=26.13 Aligned_cols=13 Identities=62% Similarity=0.743 Sum_probs=5.2
Q ss_pred CccEEEccCCccc
Q 042227 19 NFSFLDLSNNILS 31 (244)
Q Consensus 19 ~L~~L~l~~N~l~ 31 (244)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.36 E-value=0.0016 Score=52.51 Aligned_cols=88 Identities=24% Similarity=0.165 Sum_probs=73.2
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
.+......+.||++.|++. .....|+-++.+..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++.+.+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455677889999999987 55666777888889999999997 88888888888888888888876 789999999999
Q ss_pred ceecCCCCCCC
Q 042227 93 TGFPEFITEPS 103 (244)
Q Consensus 93 ~~L~l~~n~l~ 103 (244)
+.+..-.+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99888888754
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.77 E-value=0.084 Score=26.99 Aligned_cols=14 Identities=64% Similarity=0.664 Sum_probs=7.8
Q ss_pred CCccEEEccCCccc
Q 042227 18 KNFSFLDLSNNILS 31 (244)
Q Consensus 18 ~~L~~L~l~~N~l~ 31 (244)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.77 E-value=0.084 Score=26.99 Aligned_cols=14 Identities=64% Similarity=0.664 Sum_probs=7.8
Q ss_pred CCccEEEccCCccc
Q 042227 18 KNFSFLDLSNNILS 31 (244)
Q Consensus 18 ~~L~~L~l~~N~l~ 31 (244)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.94 E-value=0.13 Score=26.29 Aligned_cols=19 Identities=58% Similarity=0.952 Sum_probs=14.5
Q ss_pred CCCCCeecCCCCCCCCCCcc
Q 042227 113 LQKLETLDLSSNHLSGPIPP 132 (244)
Q Consensus 113 l~~L~~L~ls~N~l~~~~p~ 132 (244)
+++|++|++++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888899999888 5554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.94 E-value=0.13 Score=26.29 Aligned_cols=19 Identities=58% Similarity=0.952 Sum_probs=14.5
Q ss_pred CCCCCeecCCCCCCCCCCcc
Q 042227 113 LQKLETLDLSSNHLSGPIPP 132 (244)
Q Consensus 113 l~~L~~L~ls~N~l~~~~p~ 132 (244)
+++|++|++++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888899999888 5554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.20 E-value=0.065 Score=26.87 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=7.2
Q ss_pred CCCcEEEccCCCCCC
Q 042227 66 PSLVWLKLSKNDLSG 80 (244)
Q Consensus 66 ~~L~~L~Ls~N~l~~ 80 (244)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455556666665543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.22 E-value=0.013 Score=52.86 Aligned_cols=65 Identities=28% Similarity=0.215 Sum_probs=29.3
Q ss_pred CCCCCCccEEEccCCcccccCC----ccccCC-CCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCC
Q 042227 14 MSEMKNFSFLDLSNNILSGEIP----SNWEGL-EELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l 78 (244)
+...++|+.|++++|.+.+.-- ..+... ..+++|++..|.++. .+.+.+.....++.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3445666666666666653111 111111 334444444444441 2223333444555555555554
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.88 E-value=0.61 Score=24.04 Aligned_cols=18 Identities=33% Similarity=0.684 Sum_probs=13.4
Q ss_pred CCCCeecCCCCCCCCCCcc
Q 042227 114 QKLETLDLSSNHLSGPIPP 132 (244)
Q Consensus 114 ~~L~~L~ls~N~l~~~~p~ 132 (244)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888888 6665
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.62 E-value=0.017 Score=52.12 Aligned_cols=133 Identities=28% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCC--c--cCCcccC----CCCCCcEEEccCCCCCC----c
Q 042227 18 KNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLS--G--GIPASFC----SLPSLVWLKLSKNDLSG----E 81 (244)
Q Consensus 18 ~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~--~--~~p~~~~----~l~~L~~L~Ls~N~l~~----~ 81 (244)
..+++|++..+.+++. +.+.+.....++.++++.|.+. | .++..+. ...++++|.++++.++. .
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 4456666666666642 2344555666777777777663 1 1222232 35667777777777663 2
Q ss_pred hhhhccCCCC-CceecCCCCCCCCC----CCcccCCC-CCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227 82 LFVALQNCTA-FTGFPEFITEPSGR----IPENIGSL-QKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 82 ~~~~l~~l~~-L~~L~l~~n~l~~~----~p~~~~~l-~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
+...+...+. +..+++..|.+... ....+..+ ..++.++++.|.|+.. +...+..++.++ +.+++|++.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2334444555 55577776665432 22234444 5667788888877643 334455566677 777777764
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.47 E-value=0.81 Score=23.57 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=7.4
Q ss_pred CCccEEEccCCccc
Q 042227 18 KNFSFLDLSNNILS 31 (244)
Q Consensus 18 ~~L~~L~l~~N~l~ 31 (244)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=82.08 E-value=0.85 Score=48.88 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=35.1
Q ss_pred cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCC
Q 042227 120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFN 163 (244)
Q Consensus 120 ~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~ 163 (244)
||++|+|+...+..|..+++|+ |+|++|++.|.|...+..+|++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence 6889999965566788899999 9999999999988766555554
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.27 E-value=0.51 Score=42.12 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=28.2
Q ss_pred CCCCcEEEccCCC-CCCchhhhccC-CCCCceecCCCCC-CCCC-CCcccCCCCCCCeecCCCCCC
Q 042227 65 LPSLVWLKLSKND-LSGELFVALQN-CTAFTGFPEFITE-PSGR-IPENIGSLQKLETLDLSSNHL 126 (244)
Q Consensus 65 l~~L~~L~Ls~N~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~ls~N~l 126 (244)
+.+|+.+++++.. ++...-..+.. +++|+.|.+..+. ++.. +-.....++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555666666555 44332222222 5556555544443 2221 111233455566666665443
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.60 E-value=1.8 Score=22.52 Aligned_cols=14 Identities=50% Similarity=0.548 Sum_probs=8.3
Q ss_pred CCccEEEccCCccc
Q 042227 18 KNFSFLDLSNNILS 31 (244)
Q Consensus 18 ~~L~~L~l~~N~l~ 31 (244)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666654
No 84
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=76.99 E-value=2.8 Score=30.48 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHhcc
Q 042227 213 GTRIHYWILDFLWSFE 228 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~ 228 (244)
|+++|++++++++.|.
T Consensus 72 gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 72 GVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555554444433333
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.62 E-value=0.62 Score=37.03 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCC-CCCcccC-CCCCCCeecCCCC-CCCCCCccccCCCCceE-E
Q 042227 67 SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSG-RIPENIG-SLQKLETLDLSSN-HLSGPIPPSMSSMTRLS-L 142 (244)
Q Consensus 67 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~-~l~~L~~L~ls~N-~l~~~~p~~l~~l~~L~-L 142 (244)
.++.+|.++..|..+--+.+..++.++.|.+..+.--+ .--+.++ -.++|+.|++++| +||..--..+..+++|+ +
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46777777777766666666666666666666654111 0001111 2468888888876 46644445566667776 6
Q ss_pred EcccC
Q 042227 143 NLSYN 147 (244)
Q Consensus 143 ~ls~N 147 (244)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 65543
No 86
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=70.25 E-value=3.6 Score=34.86 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcccHHHHhh
Q 042227 216 IHYWILDFLWSFENQKLLEK 235 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ 235 (244)
++.+||.++|+|||++.|.+
T Consensus 270 LIMvIIYLILRYRRKKKmkK 289 (299)
T PF02009_consen 270 LIMVIIYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHHHHHHhhhhH
Confidence 34445556788888777664
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.74 E-value=2.4 Score=33.78 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=34.3
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc--CCcccCCCCCCcEEEccCC-CCCCchhhhccCCCCCcee
Q 042227 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGG--IPASFCSLPSLVWLKLSKN-DLSGELFVALQNCTAFTGF 95 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 95 (244)
.++.+|-++..|..+--+.+..++.++.|.+.++.--+- +...-+-.++|+.|++++| +|+..--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 355566666665544334455555555555555432100 0000012356666666644 3443323333334444433
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=60.93 E-value=8.8 Score=21.63 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHhcccH
Q 042227 213 GTRIHYWILDFLWSFENQ 230 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~ 230 (244)
|+++.+.+++.....+||
T Consensus 15 g~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 15 GMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 444333333333333333
No 89
>PRK01844 hypothetical protein; Provisional
Probab=60.70 E-value=7.2 Score=25.40 Aligned_cols=31 Identities=16% Similarity=-0.058 Sum_probs=20.4
Q ss_pred hhhhhh-hhHHHHHHHHHHHhcccHHHHhhhh
Q 042227 207 LFLFEH-GTRIHYWILDFLWSFENQKLLEKCP 237 (244)
Q Consensus 207 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (244)
|+++++ ++++|+++.+++.++.-++++++=+
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k~lk~NP 37 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMNYLQKNP 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333334 7778887777777777777776543
No 90
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=60.63 E-value=5.7 Score=35.32 Aligned_cols=87 Identities=21% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCCCCccEEEccCC-cccccC----CccccCCCCCCEEEccCCc-CCccCCcccC-CCCCCcEEEccCCC-CCC-chhhh
Q 042227 15 SEMKNFSFLDLSNN-ILSGEI----PSNWEGLEELMVKDLSNNS-LSGGIPASFC-SLPSLVWLKLSKND-LSG-ELFVA 85 (244)
Q Consensus 15 ~~l~~L~~L~l~~N-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~-~~~~~ 85 (244)
...+.|+.|+++++ ...... ......+.+|+.|+++.+. ++...-..+. .+++|+.|.+.++. ++. .+-..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45677777777763 111111 1223345677777777766 4422222222 26677777766665 443 23334
Q ss_pred ccCCCCCceecCCCCC
Q 042227 86 LQNCTAFTGFPEFITE 101 (244)
Q Consensus 86 l~~l~~L~~L~l~~n~ 101 (244)
...++.|++|+++.+.
T Consensus 291 ~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCH 306 (482)
T ss_pred HHhcCcccEEeeecCc
Confidence 4556677777777665
No 91
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=58.68 E-value=6.9 Score=32.66 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcccHHH
Q 042227 216 IHYWILDFLWSFENQKL 232 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~~ 232 (244)
+++.+++.+|.||||+.
T Consensus 272 ~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 272 TVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34556677899988764
No 92
>PTZ00370 STEVOR; Provisional
Probab=58.62 E-value=6.9 Score=32.71 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcccHH--HHhhhhc
Q 042227 216 IHYWILDFLWSFENQK--LLEKCPI 238 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~--~~~~~~~ 238 (244)
+++.+++.+|.||||+ |-++|.+
T Consensus 268 ~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 268 AVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3445667788888875 3456654
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.79 E-value=6 Score=36.24 Aligned_cols=11 Identities=55% Similarity=0.655 Sum_probs=4.3
Q ss_pred CCCcEEEccCC
Q 042227 66 PSLVWLKLSKN 76 (244)
Q Consensus 66 ~~L~~L~Ls~N 76 (244)
|+|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 33334444433
No 94
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=55.93 E-value=8.3 Score=30.83 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=9.8
Q ss_pred hhhhhhh--hhHHHHHHHHHHHhc
Q 042227 206 LLFLFEH--GTRIHYWILDFLWSF 227 (244)
Q Consensus 206 ~~~~~~~--~~~~~~~~~~~~~~~ 227 (244)
.++++++ |+++++++|+++.+.
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHH
Confidence 3444444 555544444443333
No 95
>PRK00523 hypothetical protein; Provisional
Probab=54.14 E-value=16 Score=23.82 Aligned_cols=29 Identities=10% Similarity=-0.173 Sum_probs=17.8
Q ss_pred hhhhhh-hhHHHHHHHHHHHhcccHHHHhh
Q 042227 207 LFLFEH-GTRIHYWILDFLWSFENQKLLEK 235 (244)
Q Consensus 207 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (244)
|+.+++ ++++|+++.+++.++.-++++++
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 67777777666666666666654
No 96
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=53.68 E-value=4 Score=29.03 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcccHH
Q 042227 213 GTRIHYWILDFLWSFENQK 231 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~ 231 (244)
.++.+++.++.+|.++||.
T Consensus 33 ~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 33 IVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhheeeeecc
Confidence 4455566677788888763
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.83 E-value=7.1 Score=35.76 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=21.7
Q ss_pred CCCCCcEEEccCCCCCCc--hhhhccCCCCCceecCCCC
Q 042227 64 SLPSLVWLKLSKNDLSGE--LFVALQNCTAFTGFPEFIT 100 (244)
Q Consensus 64 ~l~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~l~~n 100 (244)
+.+.+..+.|++|++... +...-...++|..|++++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 456778888888887632 1122233455666666665
No 98
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=51.87 E-value=18 Score=23.05 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHhcccHHHHhh
Q 042227 212 HGTRIHYWILDFLWSFENQKLLEK 235 (244)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (244)
+++++|+++.+++.++.-++++++
T Consensus 5 lali~G~~~Gff~ar~~~~k~l~~ 28 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEKQLKE 28 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666655555665554
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=51.36 E-value=9.8 Score=28.73 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=11.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhcccH
Q 042227 207 LFLFEHGTRIHYWILDFLWSFENQ 230 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
.+.+|+|.++.+.+++++|+|++|
T Consensus 53 GvVVGVGg~ill~il~lvf~~c~r 76 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIFCIR 76 (154)
T ss_pred EEEecccHHHHHHHHHhheeEEEe
Confidence 345555444444444444444433
No 100
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=45.19 E-value=18 Score=31.34 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=11.9
Q ss_pred HHHHHHHhcccHHHHhh
Q 042227 219 WILDFLWSFENQKLLEK 235 (244)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (244)
+++-++++|||++.|++
T Consensus 327 vIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 327 VIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHhhhcchhHH
Confidence 34456788888887764
No 101
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=44.21 E-value=9.2 Score=26.57 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=2.3
Q ss_pred HHHhcc
Q 042227 223 FLWSFE 228 (244)
Q Consensus 223 ~~~~~~ 228 (244)
++|+|.
T Consensus 86 l~w~f~ 91 (96)
T PTZ00382 86 LCWWFV 91 (96)
T ss_pred HhheeE
Confidence 333333
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.10 E-value=16 Score=26.63 Aligned_cols=25 Identities=12% Similarity=-0.115 Sum_probs=11.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhcccHH
Q 042227 207 LFLFEHGTRIHYWILDFLWSFENQK 231 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
.++.+++-++|..+++.++++|+|+
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566773334444444444444433
No 103
>PTZ00046 rifin; Provisional
Probab=42.67 E-value=20 Score=31.09 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=11.8
Q ss_pred HHHHHHHhcccHHHHhh
Q 042227 219 WILDFLWSFENQKLLEK 235 (244)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (244)
++|-++++|||++.|++
T Consensus 332 vIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 332 VIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHhhhcchhHH
Confidence 34456788888887764
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.36 E-value=21 Score=39.15 Aligned_cols=32 Identities=34% Similarity=0.297 Sum_probs=22.3
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCC
Q 042227 24 DLSNNILSGEIPSNWEGLEELMVKDLSNNSLS 55 (244)
Q Consensus 24 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 55 (244)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777555556777777777777777665
No 105
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=38.00 E-value=26 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=15.3
Q ss_pred chhhhhhhhhhHHHHHHHHHH
Q 042227 204 EELLFLFEHGTRIHYWILDFL 224 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~ 224 (244)
+..|.++++|+++|+.+++-+
T Consensus 25 ~~~WyWIgvgaL~G~~vlFNi 45 (65)
T PF08370_consen 25 ESYWYWIGVGALLGFIVLFNI 45 (65)
T ss_pred CCcEEeehHHHHHHHHHHHHH
Confidence 456788888888887776543
No 106
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=35.89 E-value=49 Score=21.31 Aligned_cols=28 Identities=7% Similarity=-0.164 Sum_probs=16.6
Q ss_pred hhhhhhhh--hhHHHHHHHHHHHhcccHHH
Q 042227 205 ELLFLFEH--GTRIHYWILDFLWSFENQKL 232 (244)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 232 (244)
..|..+++ |+++++...+.=+.|++|+.
T Consensus 31 ~qW~aIGvi~gi~~~~lt~ltN~YFK~k~d 60 (68)
T PF04971_consen 31 SQWAAIGVIGGIFFGLLTYLTNLYFKIKED 60 (68)
T ss_pred ccchhHHHHHHHHHHHHHHHhHhhhhhhHh
Confidence 35666666 56666666665566655443
No 107
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.05 E-value=30 Score=17.20 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=10.1
Q ss_pred CCCCCeecCCCCC-CC
Q 042227 113 LQKLETLDLSSNH-LS 127 (244)
Q Consensus 113 l~~L~~L~ls~N~-l~ 127 (244)
+++|++|+++++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3567888887764 44
No 108
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=34.59 E-value=18 Score=23.94 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=12.6
Q ss_pred hhhhhhhHHHHHHHHHHHhcccHHH
Q 042227 208 FLFEHGTRIHYWILDFLWSFENQKL 232 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
+..+.|+.+|. ++.++++|+|++
T Consensus 31 ~k~~~G~~~G~--~~s~l~frrR~~ 53 (75)
T PF04418_consen 31 VKTGLGFGIGV--VFSLLFFRRRAW 53 (75)
T ss_pred HHHhhhhhHHH--HHHHHHHccchH
Confidence 44444766665 455555555444
No 109
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=34.03 E-value=37 Score=28.82 Aligned_cols=11 Identities=0% Similarity=-0.191 Sum_probs=5.1
Q ss_pred hhhhhhhhhhH
Q 042227 205 ELLFLFEHGTR 215 (244)
Q Consensus 205 ~~~~~~~~~~~ 215 (244)
.+.+++|++++
T Consensus 272 ~vPIaVG~~La 282 (306)
T PF01299_consen 272 LVPIAVGAALA 282 (306)
T ss_pred hHHHHHHHHHH
Confidence 34455555333
No 110
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=33.70 E-value=22 Score=33.24 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=18.4
Q ss_pred cchhhhhhhh---hhHHHHHHHHHHHhcccHHHH
Q 042227 203 SEELLFLFEH---GTRIHYWILDFLWSFENQKLL 233 (244)
Q Consensus 203 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 233 (244)
....|+++++ .++|.+.|+++.|...|+..+
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~ 299 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKL 299 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence 3467888887 444445555556666655444
No 111
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.33 E-value=73 Score=25.89 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=14.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcccHHH
Q 042227 205 ELLFLFEHGTRIHYWILDFLWSFENQKL 232 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
..++++|.|+++.+.-++..++-+||++
T Consensus 60 VAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 60 VAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555566665555555555444443
No 112
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=32.66 E-value=48 Score=23.26 Aligned_cols=21 Identities=10% Similarity=-0.252 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHhcccHHHH
Q 042227 213 GTRIHYWILDFLWSFENQKLL 233 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (244)
+++|.+........+|+|+++
T Consensus 29 ~liill~c~c~~~~~r~r~~~ 49 (102)
T PF11669_consen 29 VLIILLSCCCACRHRRRRRRL 49 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444433333333333333343
No 113
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=28.98 E-value=69 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcccHHHHh
Q 042227 216 IHYWILDFLWSFENQKLLE 234 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~ 234 (244)
+++|+.+.++..|+++...
T Consensus 43 iiiivli~lcssRKkKaaA 61 (189)
T PF05568_consen 43 IIIIVLIYLCSSRKKKAAA 61 (189)
T ss_pred HHHHHHHHHHhhhhHHHHh
Confidence 3444444444444444443
No 114
>PF15050 SCIMP: SCIMP protein
Probab=28.22 E-value=61 Score=23.44 Aligned_cols=8 Identities=0% Similarity=0.252 Sum_probs=4.5
Q ss_pred hhhhhhhh
Q 042227 205 ELLFLFEH 212 (244)
Q Consensus 205 ~~~~~~~~ 212 (244)
..|+++++
T Consensus 7 nFWiiLAV 14 (133)
T PF15050_consen 7 NFWIILAV 14 (133)
T ss_pred chHHHHHH
Confidence 45665555
No 115
>PF15179 Myc_target_1: Myc target protein 1
Probab=28.17 E-value=48 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=14.6
Q ss_pred hhhhhhh--hhHHHHHHHHHHHhcccHHH
Q 042227 206 LLFLFEH--GTRIHYWILDFLWSFENQKL 232 (244)
Q Consensus 206 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 232 (244)
..+.+.+ |+++|..|++++.+..|||.
T Consensus 23 laF~vSm~iGLviG~li~~LltwlSRRRA 51 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWLSRRRA 51 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344444 77777666655444444443
No 116
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=26.77 E-value=21 Score=30.12 Aligned_cols=15 Identities=0% Similarity=-0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccHH
Q 042227 217 HYWILDFLWSFENQK 231 (244)
Q Consensus 217 ~~~~~~~~~~~~~~~ 231 (244)
.+++++++++|||||
T Consensus 160 LIA~iIa~icyrrkR 174 (290)
T PF05454_consen 160 LIAGIIACICYRRKR 174 (290)
T ss_dssp ---------------
T ss_pred HHHHHHHHHhhhhhh
Confidence 334444445555443
No 117
>PF15102 TMEM154: TMEM154 protein family
Probab=26.31 E-value=43 Score=25.16 Aligned_cols=13 Identities=0% Similarity=0.291 Sum_probs=5.7
Q ss_pred HHHHHHhcccHHH
Q 042227 220 ILDFLWSFENQKL 232 (244)
Q Consensus 220 ~~~~~~~~~~~~~ 232 (244)
+|+++.++||+|.
T Consensus 75 vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 75 VVCLVIYYKRKRT 87 (146)
T ss_pred HHHheeEEeeccc
Confidence 3444444444443
No 118
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=25.00 E-value=24 Score=29.41 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=0.0
Q ss_pred hhhhh-hhHHHHHHHHHHHhcccHHHHh
Q 042227 208 FLFEH-GTRIHYWILDFLWSFENQKLLE 234 (244)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (244)
+++.+ +++.+++.|...++||+||+.+
T Consensus 228 f~lLVPSiILVLLaVGGLLfYr~rrRs~ 255 (285)
T PF05337_consen 228 FYLLVPSIILVLLAVGGLLFYRRRRRSH 255 (285)
T ss_dssp ----------------------------
T ss_pred ccccccchhhhhhhccceeeeccccccc
Confidence 34444 5555555566666666555443
No 119
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=23.67 E-value=42 Score=30.02 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCCCcEEEccCCC-CCCchhhhc-cCCCCCceecCCCCCCC--CCCCcccCCCCCCCeecCCCCC
Q 042227 64 SLPSLVWLKLSKND-LSGELFVAL-QNCTAFTGFPEFITEPS--GRIPENIGSLQKLETLDLSSNH 125 (244)
Q Consensus 64 ~l~~L~~L~Ls~N~-l~~~~~~~l-~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~ls~N~ 125 (244)
+..+|+.+.++.++ ++..-...+ .+++.|+.+++...... +.+...-.+++.|+.|.+++..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 34556666555554 221111111 22344555554444321 1122222345555555555443
No 120
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=23.43 E-value=43 Score=24.43 Aligned_cols=6 Identities=33% Similarity=0.849 Sum_probs=1.8
Q ss_pred CCCCCC
Q 042227 178 PLTTKC 183 (244)
Q Consensus 178 ~~~~~c 183 (244)
|....|
T Consensus 59 P~S~~C 64 (129)
T PF12191_consen 59 PKSPFC 64 (129)
T ss_dssp TT-CCC
T ss_pred CCCccc
Confidence 333334
No 121
>PRK10132 hypothetical protein; Provisional
Probab=22.56 E-value=76 Score=22.55 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=10.1
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 042227 205 ELLFLFEHGTRIHYWILD 222 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (244)
..|--+++++.|||++.+
T Consensus 85 ~Pw~svgiaagvG~llG~ 102 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGA 102 (108)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 456666666566664433
No 122
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=22.18 E-value=83 Score=21.68 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=12.4
Q ss_pred hhhhhhhh--hhHHHHHHHHHHHhcccH
Q 042227 205 ELLFLFEH--GTRIHYWILDFLWSFENQ 230 (244)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~~~~~~~~~~ 230 (244)
-.|-|... |+++.+.+++.+...+.|
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K 67 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAK 67 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhh
Confidence 45666666 444444444444444433
No 123
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.93 E-value=96 Score=18.27 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.7
Q ss_pred cHHHHh
Q 042227 229 NQKLLE 234 (244)
Q Consensus 229 ~~~~~~ 234 (244)
|++..+
T Consensus 34 ~k~~~e 39 (49)
T PF05545_consen 34 NKKRFE 39 (49)
T ss_pred chhhHH
Confidence 344444
No 124
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=21.24 E-value=51 Score=22.72 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHHHhcccHHHH
Q 042227 208 FLFEHGTRIHYWILDFLWSFENQKLL 233 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
+++|+-..+||-++..++.+.|++++
T Consensus 9 ~l~g~llligftivvl~vyfgrk~yl 34 (126)
T PF13120_consen 9 LLIGTLLLIGFTIVVLLVYFGRKFYL 34 (126)
T ss_pred HHHHHHHHHHHHHHhhhheecceeee
Confidence 34444566677777777666665544
No 125
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.22 E-value=1.6e+02 Score=22.70 Aligned_cols=17 Identities=0% Similarity=0.012 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHhccc
Q 042227 213 GTRIHYWILDFLWSFEN 229 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~ 229 (244)
..++.++.++.+++.+|
T Consensus 105 s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 105 SALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33444444444454444
No 126
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.23 E-value=34 Score=28.76 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhhhhhh
Q 042227 205 ELLFLFEH 212 (244)
Q Consensus 205 ~~~~~~~~ 212 (244)
.+|+|+.+
T Consensus 37 l~w~~iim 44 (381)
T PF05297_consen 37 LVWFFIIM 44 (381)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 45555554
Done!