Query 042227
Match_columns 244
No_of_seqs 318 out of 2629
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.8E-31 2.3E-35 246.8 12.3 187 1-189 497-754 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 1E-27 3.6E-32 202.8 9.2 178 2-183 133-312 (313)
3 3m19_A Variable lymphocyte rec 99.9 4.6E-24 1.6E-28 174.8 14.6 154 1-154 42-196 (251)
4 3rgz_A Protein brassinosteroid 99.9 1.6E-24 5.4E-29 203.6 12.1 170 1-171 473-714 (768)
5 2o6q_A Variable lymphocyte rec 99.9 7.1E-23 2.4E-27 169.4 18.3 176 1-177 44-221 (270)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-24 3.7E-29 184.2 5.4 152 2-154 58-214 (313)
7 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-23 8.6E-28 173.2 12.8 154 1-154 39-194 (285)
8 3m19_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 165.0 17.7 171 2-176 22-194 (251)
9 2v70_A SLIT-2, SLIT homolog 2 99.9 1.7E-23 5.9E-28 168.3 10.8 174 1-178 18-193 (220)
10 2v9t_B SLIT homolog 2 protein 99.9 2.2E-23 7.6E-28 167.7 11.2 153 2-157 19-172 (220)
11 1p9a_G Platelet glycoprotein I 99.9 1.5E-22 5.1E-27 169.4 15.6 172 1-176 38-210 (290)
12 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-23 7.8E-28 173.5 9.1 177 1-178 63-242 (285)
13 3rfs_A Internalin B, repeat mo 99.9 4.2E-22 1.5E-26 165.0 16.3 139 14-154 59-198 (272)
14 4fcg_A Uncharacterized protein 99.9 9.5E-23 3.2E-27 173.5 11.7 149 2-155 89-247 (328)
15 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 172.6 11.3 170 1-175 111-291 (328)
16 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.6E-26 161.0 17.2 156 1-158 70-226 (272)
17 2o6q_A Variable lymphocyte rec 99.9 1.8E-21 6.1E-26 161.0 16.8 156 1-156 68-224 (270)
18 3e6j_A Variable lymphocyte rec 99.9 1.4E-21 4.7E-26 158.1 15.6 150 2-155 27-177 (229)
19 2z62_A TOLL-like receptor 4, v 99.9 6.4E-22 2.2E-26 163.9 13.9 129 1-129 35-164 (276)
20 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-22 1.2E-26 189.4 13.1 78 2-79 298-375 (844)
21 3v47_A TOLL-like receptor 5B a 99.9 1.6E-21 5.6E-26 172.1 14.2 133 44-177 277-411 (455)
22 3vq2_A TLR4, TOLL-like recepto 99.9 9.1E-22 3.1E-26 179.7 12.4 175 1-178 383-562 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 8.9E-22 3E-26 179.7 11.8 162 1-163 406-571 (606)
24 4eco_A Uncharacterized protein 99.9 9E-23 3.1E-27 187.9 5.2 149 3-155 192-370 (636)
25 3zyi_A Leucine-rich repeat-con 99.9 2.9E-21 1E-25 170.9 14.6 175 1-176 82-305 (452)
26 2o6s_A Variable lymphocyte rec 99.9 9.7E-21 3.3E-25 150.5 16.1 153 3-158 16-169 (208)
27 2z66_A Variable lymphocyte rec 99.9 9E-22 3.1E-26 165.3 10.1 139 12-151 72-213 (306)
28 2z66_A Variable lymphocyte rec 99.9 2.8E-21 9.5E-26 162.3 12.8 174 1-176 85-263 (306)
29 3v47_A TOLL-like receptor 5B a 99.9 9.8E-22 3.4E-26 173.4 9.4 142 18-159 275-417 (455)
30 2o6s_A Variable lymphocyte rec 99.8 5.4E-21 1.8E-25 152.0 11.9 149 1-156 35-184 (208)
31 3zyj_A Leucine-rich repeat-con 99.8 1E-20 3.5E-25 166.8 14.7 173 1-176 95-294 (440)
32 4eco_A Uncharacterized protein 99.8 5.7E-22 2E-26 182.6 6.6 152 1-156 213-395 (636)
33 1w8a_A SLIT protein; signaling 99.8 1.6E-21 5.6E-26 153.5 8.1 155 21-179 11-167 (192)
34 1p9a_G Platelet glycoprotein I 99.8 2.1E-20 7.3E-25 156.3 15.1 150 1-154 62-212 (290)
35 2id5_A Lingo-1, leucine rich r 99.8 1.1E-20 3.6E-25 168.1 12.5 154 1-154 39-193 (477)
36 1wwl_A Monocyte differentiatio 99.8 4.2E-21 1.4E-25 162.0 9.3 154 1-156 102-271 (312)
37 4ecn_A Leucine-rich repeat pro 99.8 1.1E-21 3.8E-26 185.6 5.9 164 3-172 434-630 (876)
38 2xot_A Amphoterin-induced prot 99.8 8E-21 2.8E-25 163.5 10.8 145 3-150 27-176 (361)
39 1wwl_A Monocyte differentiatio 99.8 2.8E-21 9.5E-26 163.1 7.7 153 1-154 70-245 (312)
40 3t6q_A CD180 antigen; protein- 99.8 8.8E-21 3E-25 173.1 11.4 153 2-154 358-517 (606)
41 2z62_A TOLL-like receptor 4, v 99.8 2.5E-20 8.6E-25 154.3 12.2 176 1-178 59-241 (276)
42 2z7x_B TOLL-like receptor 1, v 99.8 2E-20 6.8E-25 167.9 12.4 157 15-176 321-483 (520)
43 2z7x_B TOLL-like receptor 1, v 99.8 6.3E-21 2.2E-25 171.2 9.0 154 1-158 331-489 (520)
44 2id5_A Lingo-1, leucine rich r 99.8 1E-20 3.4E-25 168.2 10.0 174 4-178 186-360 (477)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-20 7.2E-25 169.6 12.2 133 15-150 350-486 (562)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-20 4.1E-25 171.2 10.4 181 1-185 360-546 (562)
47 2xot_A Amphoterin-induced prot 99.8 2.7E-20 9.4E-25 160.2 11.9 155 1-155 46-207 (361)
48 2z63_A TOLL-like receptor 4, v 99.8 7.6E-21 2.6E-25 172.0 8.6 146 14-159 392-540 (570)
49 4ecn_A Leucine-rich repeat pro 99.8 9.1E-21 3.1E-25 179.4 9.3 151 1-156 455-637 (876)
50 4g8a_A TOLL-like receptor 4; l 99.8 6.8E-20 2.3E-24 167.2 14.3 145 9-155 45-191 (635)
51 4ezg_A Putative uncharacterize 99.8 4.6E-20 1.6E-24 145.6 11.3 131 15-151 41-173 (197)
52 1ziw_A TOLL-like receptor 3; i 99.8 6.6E-20 2.3E-24 169.5 14.1 177 1-178 412-626 (680)
53 3oja_B Anopheles plasmodium-re 99.8 7.7E-20 2.6E-24 167.2 14.3 103 1-103 82-184 (597)
54 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.8E-24 146.0 13.6 152 21-176 14-167 (220)
55 3zyj_A Leucine-rich repeat-con 99.8 1E-19 3.6E-24 160.4 14.4 150 1-152 71-222 (440)
56 3o6n_A APL1; leucine-rich repe 99.8 1.2E-19 4E-24 157.4 14.4 103 1-103 76-178 (390)
57 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4E-24 154.0 14.0 135 13-151 140-277 (330)
58 1w8a_A SLIT protein; signaling 99.8 6.1E-20 2.1E-24 144.5 11.4 128 1-131 15-143 (192)
59 3zyi_A Leucine-rich repeat-con 99.8 1.5E-19 5E-24 159.9 14.8 156 1-156 106-309 (452)
60 3t6q_A CD180 antigen; protein- 99.8 5E-20 1.7E-24 168.1 12.2 156 1-156 40-198 (606)
61 3o6n_A APL1; leucine-rich repe 99.8 1E-19 3.5E-24 157.8 12.7 81 1-81 100-180 (390)
62 3oja_A Leucine-rich immune mol 99.8 2.6E-20 9E-25 166.5 8.9 170 1-176 41-252 (487)
63 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-19 1.1E-23 151.5 15.1 147 1-150 61-254 (332)
64 3oja_B Anopheles plasmodium-re 99.8 1E-19 3.5E-24 166.4 12.7 149 1-150 106-314 (597)
65 4g8a_A TOLL-like receptor 4; l 99.8 4.8E-20 1.6E-24 168.2 10.5 155 1-155 59-219 (635)
66 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-19 1.1E-23 151.5 14.8 120 2-127 41-160 (332)
67 1xku_A Decorin; proteoglycan, 99.8 4.1E-19 1.4E-23 150.6 15.3 148 1-152 59-231 (330)
68 4glp_A Monocyte differentiatio 99.8 9.6E-20 3.3E-24 153.5 11.2 168 1-172 98-283 (310)
69 2z80_A TOLL-like receptor 2, v 99.8 6.1E-20 2.1E-24 157.2 10.1 148 2-149 60-210 (353)
70 3e6j_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 143.0 14.5 154 19-177 20-175 (229)
71 4glp_A Monocyte differentiatio 99.8 8.3E-20 2.8E-24 153.9 10.2 165 2-172 125-305 (310)
72 2wfh_A SLIT homolog 2 protein 99.8 6.1E-20 2.1E-24 144.7 8.8 135 21-159 13-148 (193)
73 2z63_A TOLL-like receptor 4, v 99.8 8.1E-20 2.8E-24 165.3 10.4 152 2-153 36-193 (570)
74 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-19 7.4E-24 144.3 11.7 129 1-129 39-168 (220)
75 2xwt_C Thyrotropin receptor; s 99.8 1.2E-19 4E-24 147.3 9.8 151 1-154 38-197 (239)
76 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-19 7.8E-24 165.9 12.3 155 1-155 32-189 (680)
77 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-19 3.9E-24 163.9 9.7 149 3-154 14-165 (549)
78 2z81_A CD282 antigen, TOLL-lik 99.8 5.5E-19 1.9E-23 159.4 13.7 150 1-150 33-185 (549)
79 2xwt_C Thyrotropin receptor; s 99.8 1.5E-19 5.1E-24 146.6 8.9 158 1-163 62-229 (239)
80 3o53_A Protein LRIM1, AGAP0063 99.8 8.8E-20 3E-24 154.2 7.4 150 1-154 41-208 (317)
81 2z80_A TOLL-like receptor 2, v 99.8 1E-18 3.4E-23 149.7 13.6 151 2-155 39-192 (353)
82 3j0a_A TOLL-like receptor 5; m 99.8 3.4E-19 1.1E-23 169.0 10.3 152 2-153 32-190 (844)
83 4ezg_A Putative uncharacterize 99.8 6.9E-19 2.4E-23 138.8 9.5 144 1-151 51-195 (197)
84 1h6u_A Internalin H; cell adhe 99.8 2.2E-18 7.4E-23 145.2 12.6 130 14-153 81-211 (308)
85 2ell_A Acidic leucine-rich nuc 99.8 1.2E-18 4.2E-23 133.7 9.9 134 16-151 22-161 (168)
86 2o6r_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 131.6 12.8 134 20-156 9-143 (177)
87 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 9.8E-23 143.4 12.0 157 1-171 53-210 (291)
88 1h6u_A Internalin H; cell adhe 99.8 8.8E-18 3E-22 141.5 14.0 151 1-164 48-199 (308)
89 4b8c_D Glucose-repressible alc 99.8 2.1E-19 7.3E-24 167.7 4.0 144 9-156 215-360 (727)
90 2ell_A Acidic leucine-rich nuc 99.8 2.7E-18 9.4E-23 131.8 9.4 130 1-133 31-165 (168)
91 1h6t_A Internalin B; cell adhe 99.8 7E-18 2.4E-22 141.0 12.3 140 1-152 75-215 (291)
92 2je0_A Acidic leucine-rich nuc 99.8 1.2E-18 4.2E-23 131.1 6.8 129 16-146 15-149 (149)
93 2wfh_A SLIT homolog 2 protein 99.7 1.7E-17 5.8E-22 130.6 12.8 124 1-128 17-140 (193)
94 2o6r_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 126.6 13.3 127 2-131 15-141 (177)
95 4fmz_A Internalin; leucine ric 99.7 9.9E-18 3.4E-22 142.8 10.8 138 2-151 163-301 (347)
96 1xeu_A Internalin C; cellular 99.7 2E-17 6.7E-22 136.4 12.2 128 14-152 37-165 (263)
97 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.2E-22 151.6 12.8 138 2-151 51-189 (605)
98 1xeu_A Internalin C; cellular 99.7 8.1E-18 2.8E-22 138.7 9.2 140 1-153 48-188 (263)
99 3oja_A Leucine-rich immune mol 99.7 4.8E-18 1.7E-22 151.8 7.7 144 1-151 106-251 (487)
100 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.6E-22 125.9 8.4 121 1-123 24-149 (149)
101 3o53_A Protein LRIM1, AGAP0063 99.7 5.8E-18 2E-22 143.0 7.7 128 18-151 99-228 (317)
102 1o6v_A Internalin A; bacterial 99.7 4.9E-17 1.7E-21 144.2 12.6 140 13-163 238-378 (466)
103 4fmz_A Internalin; leucine ric 99.7 2.8E-17 9.4E-22 140.1 10.2 160 1-172 184-344 (347)
104 1m9s_A Internalin B; cell inva 99.7 6.8E-17 2.3E-21 147.8 12.8 140 1-152 72-212 (605)
105 3cvr_A Invasion plasmid antige 99.7 7.1E-17 2.4E-21 146.5 11.8 136 1-154 87-247 (571)
106 1o6v_A Internalin A; bacterial 99.7 1.4E-16 4.8E-21 141.3 12.4 140 1-152 250-390 (466)
107 3cvr_A Invasion plasmid antige 99.7 3.3E-16 1.1E-20 142.1 14.4 127 1-150 66-193 (571)
108 4b8c_D Glucose-repressible alc 99.7 3.2E-17 1.1E-21 153.0 7.5 126 26-156 209-335 (727)
109 1a9n_A U2A', U2A'; complex (nu 99.7 4.2E-17 1.4E-21 126.2 6.3 133 13-150 14-153 (176)
110 3bz5_A Internalin-J, INLJ; leu 99.7 1.2E-15 4E-20 135.3 16.3 91 2-103 50-140 (457)
111 3bz5_A Internalin-J, INLJ; leu 99.7 1.1E-15 3.7E-20 135.6 16.1 71 1-80 71-141 (457)
112 2ast_B S-phase kinase-associat 99.7 4.5E-18 1.5E-22 144.3 -0.1 147 1-148 77-233 (336)
113 1dce_A Protein (RAB geranylger 99.7 2E-18 6.7E-23 156.9 -2.5 109 43-156 442-552 (567)
114 2ast_B S-phase kinase-associat 99.7 3.2E-18 1.1E-22 145.1 -1.1 148 1-148 100-258 (336)
115 1jl5_A Outer protein YOPM; leu 99.6 1.2E-16 4E-21 141.6 6.7 42 1-43 18-59 (454)
116 3g39_A Variable lymphocyte rec 99.6 1.6E-15 5.5E-20 116.8 11.1 110 20-156 11-121 (170)
117 1jl5_A Outer protein YOPM; leu 99.6 6.3E-15 2.1E-19 130.5 15.6 112 2-127 139-250 (454)
118 1ds9_A Outer arm dynein; leuci 99.6 5.7E-19 1.9E-23 139.4 -9.6 120 3-127 27-153 (198)
119 3g39_A Variable lymphocyte rec 99.6 2.8E-15 9.5E-20 115.5 11.4 101 1-128 16-116 (170)
120 3goz_A Leucine-rich repeat-con 99.6 1.7E-17 5.7E-22 142.7 -1.8 152 1-152 5-182 (362)
121 1dce_A Protein (RAB geranylger 99.6 1.3E-15 4.3E-20 138.5 10.4 121 19-144 442-567 (567)
122 2ca6_A RAN GTPase-activating p 99.6 2.8E-17 9.6E-22 142.3 -1.6 41 15-55 91-135 (386)
123 2r9u_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 114.1 11.5 108 21-155 15-123 (174)
124 2r9u_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 114.6 10.9 105 45-177 15-121 (174)
125 2ca6_A RAN GTPase-activating p 99.6 1.8E-17 6.1E-22 143.5 -3.7 151 1-151 101-288 (386)
126 4ay9_X Follicle-stimulating ho 99.6 4.4E-15 1.5E-19 127.0 10.6 148 2-151 38-216 (350)
127 3g06_A SSPH2 (leucine-rich rep 99.6 1.2E-14 4.1E-19 133.3 12.7 80 66-154 221-301 (622)
128 1a9n_A U2A', U2A'; complex (nu 99.6 3.1E-15 1.1E-19 115.6 7.5 121 1-127 26-153 (176)
129 3goz_A Leucine-rich repeat-con 99.6 5.7E-17 2E-21 139.3 -2.7 151 1-151 29-210 (362)
130 4ay9_X Follicle-stimulating ho 99.6 8.3E-15 2.8E-19 125.3 10.7 149 3-155 18-195 (350)
131 3g06_A SSPH2 (leucine-rich rep 99.5 1.3E-13 4.3E-18 126.4 15.6 88 1-103 47-134 (622)
132 1ds9_A Outer arm dynein; leuci 99.5 1.6E-17 5.6E-22 131.0 -11.5 135 15-155 15-158 (198)
133 2ifg_A High affinity nerve gro 99.5 2.4E-13 8.3E-18 115.7 10.8 103 22-127 12-116 (347)
134 2ifg_A High affinity nerve gro 99.5 1.5E-13 5.2E-18 117.0 9.5 109 45-156 11-122 (347)
135 1z7x_W Ribonuclease inhibitor; 99.5 7.2E-16 2.5E-20 136.0 -5.3 151 1-151 206-384 (461)
136 1z7x_W Ribonuclease inhibitor; 99.4 1.6E-15 5.6E-20 133.7 -5.5 152 1-152 177-356 (461)
137 3un9_A NLR family member X1; l 99.3 2.6E-14 8.7E-19 123.5 -7.1 133 18-150 101-252 (372)
138 3sb4_A Hypothetical leucine ri 99.2 5.3E-11 1.8E-15 100.7 8.8 85 65-151 225-311 (329)
139 3sb4_A Hypothetical leucine ri 99.2 1.1E-10 3.9E-15 98.6 10.6 102 41-144 225-328 (329)
140 3ogk_B Coronatine-insensitive 99.0 7.8E-12 2.7E-16 113.4 -2.5 138 15-152 375-528 (592)
141 3un9_A NLR family member X1; l 99.0 2.6E-12 8.8E-17 110.9 -5.6 135 17-151 71-225 (372)
142 3ogk_B Coronatine-insensitive 99.0 1.2E-10 4.2E-15 105.6 4.2 133 16-150 162-306 (592)
143 2p1m_B Transport inhibitor res 98.8 3.4E-11 1.1E-15 109.2 -6.9 133 17-150 371-519 (594)
144 1io0_A Tropomodulin; LRR prote 98.8 6.4E-10 2.2E-14 86.5 0.6 112 39-150 33-164 (185)
145 2p1m_B Transport inhibitor res 98.7 5E-10 1.7E-14 101.5 -2.4 61 17-77 129-195 (594)
146 1io0_A Tropomodulin; LRR prote 98.7 1.8E-09 6.3E-14 83.9 0.4 115 13-127 31-164 (185)
147 4fdw_A Leucine rich hypothetic 98.7 1.4E-07 4.8E-12 82.0 11.1 140 2-147 188-333 (401)
148 3rw6_A Nuclear RNA export fact 98.6 1.9E-09 6.3E-14 88.6 -1.2 41 40-80 168-210 (267)
149 4fdw_A Leucine rich hypothetic 98.6 1.9E-07 6.6E-12 81.1 10.9 130 13-147 175-310 (401)
150 2ra8_A Uncharacterized protein 98.6 3.5E-09 1.2E-13 90.9 -1.6 135 14-151 135-293 (362)
151 3rw6_A Nuclear RNA export fact 98.5 5.9E-08 2E-12 79.6 4.9 67 15-83 167-237 (267)
152 2ra8_A Uncharacterized protein 98.3 2.3E-07 7.9E-12 79.5 3.5 139 10-151 164-321 (362)
153 3e4g_A ATP synthase subunit S, 98.1 2.4E-06 8.3E-11 65.4 3.7 85 43-127 62-153 (176)
154 4gt6_A Cell surface protein; l 97.9 3.7E-05 1.3E-09 66.2 8.5 110 35-148 258-368 (394)
155 3e4g_A ATP synthase subunit S, 97.9 4.2E-06 1.4E-10 64.1 2.2 84 18-101 61-150 (176)
156 4fs7_A Uncharacterized protein 97.7 0.00021 7.3E-09 61.4 11.0 126 15-147 250-376 (394)
157 4h09_A Hypothetical leucine ri 97.7 0.00022 7.5E-09 60.8 10.3 128 14-145 213-341 (379)
158 1pgv_A TMD-1, tropomodulin TMD 97.7 1E-05 3.4E-10 63.2 1.4 109 41-149 40-169 (197)
159 4h09_A Hypothetical leucine ri 97.6 0.00033 1.1E-08 59.7 10.6 123 12-138 234-356 (379)
160 4fs7_A Uncharacterized protein 97.5 0.00042 1.5E-08 59.5 9.8 122 12-141 270-391 (394)
161 4gt6_A Cell surface protein; l 97.5 0.00074 2.5E-08 58.0 11.1 107 14-124 261-367 (394)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 2.8E-05 9.5E-10 60.6 0.9 112 15-126 38-169 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00043 1.5E-08 50.2 6.1 57 21-79 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.2 0.00054 1.9E-08 49.6 5.6 48 114-161 31-79 (130)
165 2l2t_A Receptor tyrosine-prote 86.2 0.28 9.6E-06 27.9 1.3 18 214-231 20-37 (44)
166 2ks1_B Epidermal growth factor 81.4 0.54 1.8E-05 26.8 1.1 18 214-231 21-38 (44)
167 2jwa_A Receptor tyrosine-prote 73.0 2.2 7.4E-05 24.2 2.0 19 213-231 20-38 (44)
168 2l9u_A Receptor tyrosine-prote 58.7 8.2 0.00028 20.4 2.3 20 213-232 15-34 (40)
169 2k1k_A Ephrin type-A receptor 56.3 6.1 0.00021 21.6 1.7 7 213-219 19-25 (38)
170 2k9y_A Ephrin type-A receptor 56.0 5.8 0.0002 21.8 1.7 11 220-230 29-39 (41)
171 2lz0_A Uncharacterized protein 55.4 20 0.00069 23.9 4.7 39 35-74 13-51 (100)
172 2lz0_A Uncharacterized protein 43.7 68 0.0023 21.2 6.5 48 5-53 7-54 (100)
173 1afo_A Glycophorin A; integral 28.1 49 0.0017 17.9 2.4 21 213-233 18-38 (40)
174 2llm_A Amyloid beta A4 protein 27.2 19 0.00067 20.0 0.0 18 213-230 26-43 (43)
175 2knc_A Integrin alpha-IIB; tra 20.3 90 0.0031 18.3 2.7 6 205-210 11-16 (54)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.8e-31 Score=246.78 Aligned_cols=187 Identities=37% Similarity=0.606 Sum_probs=161.7
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCccc------------------
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF------------------ 62 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~------------------ 62 (244)
|++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|.++|.+|..+
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 46777777777777777888888888888877777778888888888888887776666433
Q ss_pred ----------------------------------------------------CCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227 63 ----------------------------------------------------CSLPSLVWLKLSKNDLSGELFVALQNCT 90 (244)
Q Consensus 63 ----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 90 (244)
+.+++|++|++++|+++|.+|..++.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 3356788899999999999999999999
Q ss_pred CCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCcccc
Q 042227 91 AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYM 169 (244)
Q Consensus 91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~ 169 (244)
+|+.|+++.|.++|.+|+.++++++|++||+++|+++|.+|..++.++.|+ +|+++|+++|.+|...++.++...+ |.
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~~ 735 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-FL 735 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-GC
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH-hc
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999888 99
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 042227 170 GNADLCSPPLTTKCSSDLRN 189 (244)
Q Consensus 170 ~n~~~c~~~~~~~c~~~~~~ 189 (244)
||+++||.|.. .|..+...
T Consensus 736 gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 736 NNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp SCTEEESTTSC-CCCSCC--
T ss_pred CCchhcCCCCc-CCCCCccC
Confidence 99999999987 88765433
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1e-27 Score=202.80 Aligned_cols=178 Identities=31% Similarity=0.546 Sum_probs=126.8
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCC-CCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLE-ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+++.+|..+..++ |++|++++|++++
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 44555555555555555555555555555544555555554 555555555555545555555554 5555555666655
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
..|..+..+++|+.|+++.|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+ |++++|+++|.+|....+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l 290 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence 6666777777788888888877766655 77888999999999999988999999999999 999999999999998888
Q ss_pred ccCCCCccccCCCCCCCCCCCCCC
Q 042227 160 QTFNDPSIYMGNADLCSPPLTTKC 183 (244)
Q Consensus 160 ~~l~~~~~~~~n~~~c~~~~~~~c 183 (244)
+.+.... +.+|+.+||.|.. .|
T Consensus 291 ~~L~~l~-l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 291 QRFDVSA-YANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGSCGGG-TCSSSEEESTTSS-CC
T ss_pred cccChHH-hcCCCCccCCCCC-CC
Confidence 8888777 8999999998876 46
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=4.6e-24 Score=174.76 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=123.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 42 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 121 (251)
T 3m19_A 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC
Confidence 46778877777778888888888888888887777778888888888888888886666777888888888888888887
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
..+..+..+++|+.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ +++++|++++...
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 6666778888888888888888866666788888888888888888866666788888888 8888888887643
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.6e-24 Score=203.56 Aligned_cols=170 Identities=37% Similarity=0.551 Sum_probs=133.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|+++|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 46677777777777777888888888888877777777778888888888888877788888888888888888887776
Q ss_pred chhhhcc----------------------------------------------------------------------CCC
Q 042227 81 ELFVALQ----------------------------------------------------------------------NCT 90 (244)
Q Consensus 81 ~~~~~l~----------------------------------------------------------------------~l~ 90 (244)
.+|..+. .++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 6665432 245
Q ss_pred CCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cccccCCCCccc
Q 042227 91 AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIY 168 (244)
Q Consensus 91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~ 168 (244)
+|+.|+++.|.++|.+|..++.+++|+.|++++|+++|.+|..+++++.|+ ||+++|+++|.+|.. ..+..+...+ .
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID-L 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE-C
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE-C
Confidence 677888888999999999999999999999999999999999999999999 999999999999865 3344444333 3
Q ss_pred cCC
Q 042227 169 MGN 171 (244)
Q Consensus 169 ~~n 171 (244)
.+|
T Consensus 712 s~N 714 (768)
T 3rgz_A 712 SNN 714 (768)
T ss_dssp CSS
T ss_pred cCC
Confidence 444
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.1e-23 Score=169.41 Aligned_cols=176 Identities=19% Similarity=0.157 Sum_probs=136.4
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..+..+.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 44 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 46777876666678888888888888888885555566788888888888888886556677888888888888888887
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-Ccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQ 158 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~ 158 (244)
..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ |++++|.+++..+. ...
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 7777788888888888888888866666688888888999988888866666788888888 89988888865443 233
Q ss_pred cccCCCCccccCCCCCCCC
Q 042227 159 FQTFNDPSIYMGNADLCSP 177 (244)
Q Consensus 159 ~~~l~~~~~~~~n~~~c~~ 177 (244)
+..+.... +.+|+..|..
T Consensus 204 l~~L~~L~-l~~N~~~c~c 221 (270)
T 2o6q_A 204 LEKLKMLQ-LQENPWDCTC 221 (270)
T ss_dssp CTTCCEEE-CCSSCBCCSS
T ss_pred ccCCCEEE-ecCCCeeCCC
Confidence 44555555 6777776654
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.1e-24 Score=184.24 Aligned_cols=152 Identities=31% Similarity=0.483 Sum_probs=98.0
Q ss_pred CCCcCCc--cCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCC
Q 042227 2 SRSLLNG--TIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 2 s~N~l~~--~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 78 (244)
++|.+++ .+|+.+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|++
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence 4566666 6666666677777777763 666666666666666777777776666666666666666666666666666
Q ss_pred CCchhhhccCCCCCceecCCCCCCCCCCCcccCCCC-CCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQ-KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 79 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
++.+|..+..+++|+.|+++.|.+++.+|..++.++ +|++|++++|++++.+|..+..+. |+ +++++|.+++.+|
T Consensus 138 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 666666666666666666666666666666666665 666666666666655555555554 55 5555555554433
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.5e-23 Score=173.23 Aligned_cols=154 Identities=23% Similarity=0.201 Sum_probs=104.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|. ++...|..+..+++|++|++++|+++
T Consensus 39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence 45677766655667777777777777777776556677777777777777775 65444666777777777777777777
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
+..+..+..+++|+.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ |++++|.+++..|
T Consensus 119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 66666677777777777777777655555566677777777777777644444566666676 7777776665544
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2e-22 Score=164.96 Aligned_cols=171 Identities=22% Similarity=0.231 Sum_probs=147.2
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 22 ~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 22 QGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp TTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 456665 6777665 6899999999999988888899999999999999999987788899999999999999999988
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-Cccc
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQF 159 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~ 159 (244)
.+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ |++++|.+++..+. ...+
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 888899999999999999999977777789999999999999999966666899999999 99999999976663 3344
Q ss_pred ccCCCCccccCCCCCCC
Q 042227 160 QTFNDPSIYMGNADLCS 176 (244)
Q Consensus 160 ~~l~~~~~~~~n~~~c~ 176 (244)
..+.... +.+|+..|.
T Consensus 179 ~~L~~L~-l~~N~~~c~ 194 (251)
T 3m19_A 179 GKLQTIT-LFGNQFDCS 194 (251)
T ss_dssp TTCCEEE-CCSCCBCTT
T ss_pred CCCCEEE-eeCCceeCC
Confidence 5555555 677776664
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=168.32 Aligned_cols=174 Identities=20% Similarity=0.201 Sum_probs=146.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
+++|.++ .+|..+. ..+++|++++|.+++..| ..|..+++|+.|++++|.+++..+..|..+++|++|++++|+++
T Consensus 18 ~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 18 CSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp CCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 4678886 5787664 457899999999997644 45889999999999999999777779999999999999999999
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ 158 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~ 158 (244)
+..+..+..+++|+.|+++.|.+++..|..+..+++|++|++++|++++..|..+..+++|+ +++++|++.+.++..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l 174 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHH
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHH
Confidence 88888999999999999999999998899999999999999999999987799999999999 99999999999886554
Q ss_pred cccCCCCccccCCCCCCCCC
Q 042227 159 FQTFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 159 ~~~l~~~~~~~~n~~~c~~~ 178 (244)
..++....++.+++ .|..|
T Consensus 175 ~~~~~~~~~~~~~~-~C~~P 193 (220)
T 2v70_A 175 GEWLRKKRIVTGNP-RCQKP 193 (220)
T ss_dssp HHHHHHSCCBCCCC-EEEES
T ss_pred HHHHHhcCccccCC-ccCCC
Confidence 44443222233443 46544
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=2.2e-23 Score=167.68 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=137.5
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|+|++|+++..
T Consensus 19 ~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 19 RGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 456665 6777664 7899999999999977777899999999999999999977799999999999999999999977
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCc
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTK 157 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~ 157 (244)
.+..+..+++|+.|+++.|.+++..|..|..+++|++|++++|++++..+..+..+++|+ +++++|++.+.+...+
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 677789999999999999999998899999999999999999999977777899999999 9999999998776443
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.5e-22 Score=169.45 Aligned_cols=172 Identities=24% Similarity=0.183 Sum_probs=137.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..+..+++|++|++++|.+++..+ . ..+++|+.|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 38 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114 (290)
T ss_dssp CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC
T ss_pred cCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc
Confidence 56788887777888888999999999998885433 2 67888999999999998 788888889999999999999987
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
..+..+..+++|+.|+++.|.+++..+..|..+++|+.|++++|+++...+..+..+++|+ |++++|+++...+.....
T Consensus 115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence 7778899999999999999999877777788899999999999999955555678899999 999999998433333333
Q ss_pred ccCCCCccccCCCCCCC
Q 042227 160 QTFNDPSIYMGNADLCS 176 (244)
Q Consensus 160 ~~l~~~~~~~~n~~~c~ 176 (244)
..+.... +.+|+..|.
T Consensus 195 ~~L~~l~-L~~Np~~C~ 210 (290)
T 1p9a_G 195 HLLPFAF-LHGNPWLCN 210 (290)
T ss_dssp CCCSEEE-CCSCCBCCS
T ss_pred ccCCeEE-eCCCCccCc
Confidence 3444444 577887774
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.3e-23 Score=173.49 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=151.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCc-ccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNI-LSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|.+++..|..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 63 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 57889998888999999999999999997 88666888999999999999999999777888999999999999999999
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-Cc
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TK 157 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~ 157 (244)
+..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..|..+..+++|+ |++++|.+++..+. ..
T Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 77777899999999999999999876666789999999999999999987789999999999 99999999875543 23
Q ss_pred ccccCCCCccccCCCCCCCCC
Q 042227 158 QFQTFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 158 ~~~~l~~~~~~~~n~~~c~~~ 178 (244)
.+..+.... +.+|+..|..+
T Consensus 223 ~l~~L~~L~-l~~N~~~c~~~ 242 (285)
T 1ozn_A 223 PLRALQYLR-LNDNPWVCDCR 242 (285)
T ss_dssp TCTTCCEEE-CCSSCEECSGG
T ss_pred cCcccCEEe-ccCCCccCCCC
Confidence 344555555 67788777543
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.2e-22 Score=164.98 Aligned_cols=139 Identities=25% Similarity=0.206 Sum_probs=66.5
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 93 (244)
+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 4444555555555555442 1 2344455555555555555433334444455555555555555444444444555555
Q ss_pred eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ |++++|.+++..|
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 555555554444344444455555555555555433333444445555 5555555544333
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=9.5e-23 Score=173.49 Aligned_cols=149 Identities=22% Similarity=0.295 Sum_probs=99.8
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.++ .+|+.+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|++.+.
T Consensus 89 ~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 89 RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 456665 66666666777777777777777 66666777777777777777776 6666677777777777777666666
Q ss_pred hhhhccC---------CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 82 LFVALQN---------CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 82 ~~~~l~~---------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
+|..+.. +++|+.|+++.|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|+ |++++|.+.+
T Consensus 166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC
T ss_pred cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh
Confidence 6655543 666666666666666 56666666666666666666666 3555566666666 6666666666
Q ss_pred CCCC
Q 042227 152 PIPL 155 (244)
Q Consensus 152 ~~p~ 155 (244)
.+|.
T Consensus 244 ~~p~ 247 (328)
T 4fcg_A 244 NYPP 247 (328)
T ss_dssp BCCC
T ss_pred hhHH
Confidence 6554
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.3e-22 Score=172.61 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=134.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCC---------CCCCcEE
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCS---------LPSLVWL 71 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~---------l~~L~~L 71 (244)
|++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+.. +++|++|
T Consensus 111 L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L 188 (328)
T 4fcg_A 111 IDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188 (328)
T ss_dssp EESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE
T ss_pred CCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE
Confidence 4578888 88888888999999999999988 77888888899999999988777788876654 8888888
Q ss_pred EccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 72 KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 72 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
++++|+++ .+|..+..+++|+.|+++.|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|+ |++++|.+.
T Consensus 189 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp EEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred ECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 88888888 778888888888888888888884 566688888888888888888888888888888888 888888888
Q ss_pred CCCCCC-cccccCCCCccccCCCCCC
Q 042227 151 GPIPLT-KQFQTFNDPSIYMGNADLC 175 (244)
Q Consensus 151 ~~~p~~-~~~~~l~~~~~~~~n~~~c 175 (244)
+.+|.. ..+..+.... +.+|+..-
T Consensus 267 ~~~p~~~~~l~~L~~L~-L~~n~~~~ 291 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLD-LRGCVNLS 291 (328)
T ss_dssp CBCCTTGGGCTTCCEEE-CTTCTTCC
T ss_pred hhcchhhhcCCCCCEEe-CCCCCchh
Confidence 887754 3344444444 44554433
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.9e-21 Score=161.01 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=141.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++ + +.+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 70 l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 70 LGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp CTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 57788876 3 478899999999999999997777788999999999999999997777778999999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ 158 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~ 158 (244)
..+..+..+++|+.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ +++++|++.|.+|....
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 226 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHH
Confidence 8888889999999999999999987777789999999999999999987777889999999 99999999999886543
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.8e-21 Score=160.98 Aligned_cols=156 Identities=22% Similarity=0.217 Sum_probs=139.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.++...+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 68 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 57889986555667899999999999999997767788999999999999999997777889999999999999999997
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.++..
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 7777799999999999999999987777799999999999999999966666789999999 999999999988743
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=1.4e-21 Score=158.10 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=134.1
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.++...+..|..+++|++|++++|++++.
T Consensus 27 ~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 27 RSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 455554 6776654 8999999999999988889999999999999999999855557789999999999999999988
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
.+..+..+++|+.|+++.|.++ .+|..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.++.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 7788999999999999999999 7888899999999999999999966667799999999 99999999998874
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6.4e-22 Score=163.95 Aligned_cols=129 Identities=22% Similarity=0.217 Sum_probs=85.4
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|++++
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence 45666665555566667777777777777765555566667777777777777765555666667777777777777665
Q ss_pred chhhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGP 129 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~ 129 (244)
..+..+..+++|+.|+++.|.+++ .+|..+..+++|++|++++|++++.
T Consensus 115 ~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 555566666777777777776665 2466666666777777766666643
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.5e-22 Score=189.37 Aligned_cols=78 Identities=27% Similarity=0.315 Sum_probs=40.4
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
++|.+++..|..+.++++|++|++++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|++|++++|.++
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 344555444555555555555555555555444555555555555555555555433444555555555555555443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.6e-21 Score=172.05 Aligned_cols=133 Identities=22% Similarity=0.159 Sum_probs=67.7
Q ss_pred CCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCC
Q 042227 44 LMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS 123 (244)
Q Consensus 44 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 123 (244)
|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|+++.|.+++..|..++.+++|++|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 33333333333333344455555555555555555555555555555555555555555554455555555555555555
Q ss_pred CCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCCC
Q 042227 124 NHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCSP 177 (244)
Q Consensus 124 N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~~ 177 (244)
|++++..|..+..+++|+ |++++|++++..+.. ..+..+.... +.+|+..|..
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~ 411 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW-LHTNPWDCSC 411 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSSCBCCCT
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE-ccCCCcccCC
Confidence 555544455555555555 555555555433322 2233333333 4455544443
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=9.1e-22 Score=179.65 Aligned_cols=175 Identities=21% Similarity=0.188 Sum_probs=126.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|.+++ +|..+..+++|++|++++|++++..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 45666653 55677778888888888888776655 56777788888888888877767777777888888888888777
Q ss_pred C-chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-
Q 042227 80 G-ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT- 156 (244)
Q Consensus 80 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~- 156 (244)
+ .+|..+..+++|+.|+++.|.+++..|..++.+++|++|++++|++++..|..+..+++|+ +++++|+++ .+|..
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 6 3677777788888888888887777777777788888888888888766677777777887 888888777 34433
Q ss_pred cccc-cCCCCccccCCCCCCCCC
Q 042227 157 KQFQ-TFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 157 ~~~~-~l~~~~~~~~n~~~c~~~ 178 (244)
..+. .+.... +.+|+..|..+
T Consensus 541 ~~l~~~L~~l~-l~~N~~~c~c~ 562 (606)
T 3vq2_A 541 QHFPKSLAFFN-LTNNSVACICE 562 (606)
T ss_dssp GGSCTTCCEEE-CCSCCCCCSST
T ss_pred hhhcccCcEEE-ccCCCcccCCc
Confidence 2222 244344 56777776543
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=8.9e-22 Score=179.74 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=142.9
Q ss_pred CCCCcCCccCC-cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc-cCCcccCCCCCCcEEEccCCCC
Q 042227 1 LSRSLLNGTIP-PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG-GIPASFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l 78 (244)
|++|++++..| ..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|++
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 56788888777 678899999999999999998888889999999999999999986 4788899999999999999999
Q ss_pred CCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCC-ceE-EEcccCCCcCCCCCC
Q 042227 79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT-RLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 79 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~-~L~-L~ls~N~l~~~~p~~ 156 (244)
++..|..+..+++|+.|+++.|.+++..|..++.+++|++|++++|+++ .+|..+..++ +|+ +++++|++.|.++..
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9888889999999999999999999888899999999999999999999 7888888887 599 999999999988876
Q ss_pred cccccCC
Q 042227 157 KQFQTFN 163 (244)
Q Consensus 157 ~~~~~l~ 163 (244)
+..+++.
T Consensus 565 ~~~~~l~ 571 (606)
T 3vq2_A 565 KFLQWVK 571 (606)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
Confidence 5555554
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=9e-23 Score=187.95 Aligned_cols=149 Identities=21% Similarity=0.314 Sum_probs=105.3
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCccccc-----------------CCcccc--CCCCCCEEEccCCcCCccCCcccC
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGE-----------------IPSNWE--GLEELMVKDLSNNSLSGGIPASFC 63 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~ 63 (244)
+|+++| +|+.++++++|++|++++|.+++. +|+.+. ++++|++|++++|.+.+.+|..++
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 456666 677777777777777777777754 666666 777777777777777767777777
Q ss_pred CCCCCcEEEccCCC-CCC-chhhhccCC------CCCceecCCCCCCCCCCCc--ccCCCCCCCeecCCCCCCCCCCccc
Q 042227 64 SLPSLVWLKLSKND-LSG-ELFVALQNC------TAFTGFPEFITEPSGRIPE--NIGSLQKLETLDLSSNHLSGPIPPS 133 (244)
Q Consensus 64 ~l~~L~~L~Ls~N~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~ 133 (244)
++++|++|++++|+ +++ .+|..++++ ++|+.|+++.|.++ .+|. .++++++|++|++++|+++|.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 77777777777776 666 667666665 67777777777777 6666 67777777777777777776667 6
Q ss_pred cCCCCceE-EEcccCCCcCCCCC
Q 042227 134 MSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 134 l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
+..+++|+ |++++|.++ .+|.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCT
T ss_pred hCCCCCCCEEECCCCccc-cccH
Confidence 77777777 777777776 4443
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.9e-21 Score=170.85 Aligned_cols=175 Identities=17% Similarity=0.125 Sum_probs=105.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++.
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 45667766666667777777777777777776556666667777777777777664444556666666666666666653
Q ss_pred chhhh-------------------------ccCCCCCce----------------------ecCCCCCCCCCCCcccCCC
Q 042227 81 ELFVA-------------------------LQNCTAFTG----------------------FPEFITEPSGRIPENIGSL 113 (244)
Q Consensus 81 ~~~~~-------------------------l~~l~~L~~----------------------L~l~~n~l~~~~p~~~~~l 113 (244)
..+.. +..+++|+. |++++|.+++..|..|.++
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCc
Confidence 33222 333333333 3334444444445556666
Q ss_pred CCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCC
Q 042227 114 QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCS 176 (244)
Q Consensus 114 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~ 176 (244)
++|+.|++++|++++..+..+..+++|+ |++++|.+++..+.. ..+..+.... +.+|+..|.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~Np~~Cd 305 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH-LHHNPWNCD 305 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE-CCSSCEECS
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE-ccCCCcCCC
Confidence 6666666666666655566667777777 777777776544332 2234444444 567776664
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=9.7e-21 Score=150.53 Aligned_cols=153 Identities=21% Similarity=0.200 Sum_probs=132.1
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 82 (244)
++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 16 ~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 16 SQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp SSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 44554 456544 468999999999999766777899999999999999999666667899999999999999999777
Q ss_pred hhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227 83 FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ 158 (244)
Q Consensus 83 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~ 158 (244)
+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.+|....
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 169 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 169 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHH
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHH
Confidence 77789999999999999999987777789999999999999999966666789999999 99999999998885433
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=9e-22 Score=165.31 Aligned_cols=139 Identities=25% Similarity=0.308 Sum_probs=64.9
Q ss_pred cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKNDLSGELFVALQNCT 90 (244)
Q Consensus 12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 90 (244)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 33334455555555555544 334444445555555555554442222 2444444555555555544444444444444
Q ss_pred CCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 91 AFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 91 ~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
+|+.|+++.|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+ |++++|.+++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 45555554444443 2344444444444555544444433344444444444 4444444443
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.8e-21 Score=162.33 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=123.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 4567665 456667778888888888888775443 46777788888888888877666777777788888888888776
Q ss_pred C-chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-
Q 042227 80 G-ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT- 156 (244)
Q Consensus 80 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~- 156 (244)
+ ..|..+..+++|+.|+++.|.+++..|..+..+++|++|++++|++++..+..+..+++|+ +++++|.+++..|..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 5677777788888888888887776677777788888888888888765555677777887 888888877766543
Q ss_pred ccc-ccCCCCccccCCCCCCC
Q 042227 157 KQF-QTFNDPSIYMGNADLCS 176 (244)
Q Consensus 157 ~~~-~~l~~~~~~~~n~~~c~ 176 (244)
..+ ..+.... +.+|+..|.
T Consensus 244 ~~~~~~L~~L~-L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLN-LTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEE-CTTCCEECS
T ss_pred HhhhccCCEEE-ccCCCeecc
Confidence 222 2343334 556665553
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=9.8e-22 Score=173.45 Aligned_cols=142 Identities=19% Similarity=0.148 Sum_probs=132.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecC
Q 042227 18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE 97 (244)
Q Consensus 18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 97 (244)
++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999888999999999999999999999888889999999999999999999888999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 98 FITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 98 ~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
++|.+++..|..+..+++|++|++++|++++..+..+..+++|+ +++++|+++|.+|....+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 99999988899999999999999999999976666789999999 999999999999976544
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.4e-21 Score=152.02 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=132.7
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 35 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence 57899987767778999999999999999997666678999999999999999996666678999999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|.+.+ .++.|+ ++++.|.++|.+|..
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 777789999999999999999997777778999999999999998874 356788 999999999999864
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=166.81 Aligned_cols=173 Identities=20% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCccc------------------
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF------------------ 62 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~------------------ 62 (244)
|++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|.++...+..|
T Consensus 95 Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp CCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc
Confidence 45666665555666666666666666666664444456666666666666666653333334
Q ss_pred -------CCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227 63 -------CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS 135 (244)
Q Consensus 63 -------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 135 (244)
..+++|++|++++|+++ .+| .+..+++|+.|+++.|.+++..|..|.++++|++|++++|++++..+..|.
T Consensus 175 ~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 175 YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp EECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred eeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 44444444444444444 222 245555666666666666666666677777777777777777766666777
Q ss_pred CCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCC
Q 042227 136 SMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCS 176 (244)
Q Consensus 136 ~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~ 176 (244)
.+++|+ |++++|++++..+.. ..+..+.... +.+|+..|.
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~Np~~Cd 294 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH-LHHNPWNCN 294 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE-CCSSCEECS
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEE-cCCCCccCC
Confidence 777777 777777777544432 2344444444 567776664
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=5.7e-22 Score=182.59 Aligned_cols=152 Identities=21% Similarity=0.363 Sum_probs=142.4
Q ss_pred CCCCcCCcc-----------------CCcCCC--CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCc-cCC
Q 042227 1 LSRSLLNGT-----------------IPPSMS--EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSG-GIP 59 (244)
Q Consensus 1 Ls~N~l~~~-----------------ip~~l~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p 59 (244)
|++|++++. +|+.++ ++++|++|++++|.+.+.+|+.+.++++|++|++++|+ +++ .+|
T Consensus 213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence 467889886 999999 99999999999999999999999999999999999998 998 899
Q ss_pred cccCCC------CCCcEEEccCCCCCCchhh--hccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc
Q 042227 60 ASFCSL------PSLVWLKLSKNDLSGELFV--ALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131 (244)
Q Consensus 60 ~~~~~l------~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 131 (244)
..++.+ ++|++|++++|+++ .+|. .+.++++|+.|+++.|.++|.+| .++.+++|++|++++|+++ .+|
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp 369 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP 369 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC
T ss_pred HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc
Confidence 888876 99999999999999 8888 99999999999999999999999 8999999999999999999 899
Q ss_pred cccCCCCc-eE-EEcccCCCcCCCCCC
Q 042227 132 PSMSSMTR-LS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 132 ~~l~~l~~-L~-L~ls~N~l~~~~p~~ 156 (244)
..+..+++ |+ |++++|.++ .+|..
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred HhhhhhcccCcEEEccCCcCc-ccchh
Confidence 99999999 99 999999999 67654
No 33
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=1.6e-21 Score=153.50 Aligned_cols=155 Identities=25% Similarity=0.264 Sum_probs=125.2
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI 99 (244)
Q Consensus 21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 99 (244)
+++++++|.++ .+|..+.. +++.|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|+.|+++.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68899999987 67776543 889999999999855443 488899999999999999988888899999999999999
Q ss_pred CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCccccCCCCCCCCC
Q 042227 100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~~n~~~c~~~ 178 (244)
|.+++..+..|.++++|++|++++|++++..|..+..+++|+ +++++|++.|.++..+...++.... +.++...|+.|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~-~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS-LNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC-CSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcC-CCCCCCCCCCC
Confidence 999988888899999999999999999988899999999999 9999999999887654433333222 34444556655
Q ss_pred C
Q 042227 179 L 179 (244)
Q Consensus 179 ~ 179 (244)
.
T Consensus 167 ~ 167 (192)
T 1w8a_A 167 S 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.1e-20 Score=156.32 Aligned_cols=150 Identities=24% Similarity=0.151 Sum_probs=135.3
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..+ ...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++
T Consensus 62 L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 57888875433 278999999999999999 788889999999999999999996667889999999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
..+..+..+++|+.|+++.|+++...+..+..+++|++|++++|+++ .+|..+..+..|+ +++++|++.+.+.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 87888999999999999999999766667889999999999999999 7899888899999 9999999998764
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=168.08 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=129.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 118 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence 57888888778888899999999999999987778888899999999999999885555668888999999999999988
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
..+..+..+++|+.|+++.|.+++..+..|.++++|++|++++|++++..+..+..+++|+ |++++|.+.+..+
T Consensus 119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 8888888899999999999988887778888888899999998888865556678888888 8888888776444
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=4.2e-21 Score=162.00 Aligned_cols=154 Identities=25% Similarity=0.263 Sum_probs=125.3
Q ss_pred CCCCcCCccCCcCC--CCCCCccEEEccCCcccccCCccccCC-----CCCCEEEccCCcCCccCCcccCCCCCCcEEEc
Q 042227 1 LSRSLLNGTIPPSM--SEMKNFSFLDLSNNILSGEIPSNWEGL-----EELMVKDLSNNSLSGGIPASFCSLPSLVWLKL 73 (244)
Q Consensus 1 Ls~N~l~~~ip~~l--~~l~~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 73 (244)
|++|++++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..|..++.+++|++|++
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 46788999999876 8899999999999999966 7777776 89999999999999777789999999999999
Q ss_pred cCCCCCCc--hhhhc--cCCCCCceecCCCCCCCC--CCC-cccCCCCCCCeecCCCCCCCCCCc-cccCCCCceE-EEc
Q 042227 74 SKNDLSGE--LFVAL--QNCTAFTGFPEFITEPSG--RIP-ENIGSLQKLETLDLSSNHLSGPIP-PSMSSMTRLS-LNL 144 (244)
Q Consensus 74 s~N~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~-L~l 144 (244)
++|++.+. .+..+ ..+++|+.|+++.|.+++ .++ ..+..+++|++|++++|++++..| ..+..+++|+ |++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 99998765 34454 888999999999998873 222 334577889999999999987664 4566678888 999
Q ss_pred ccCCCcCCCCCC
Q 042227 145 SYNDLTGPIPLT 156 (244)
Q Consensus 145 s~N~l~~~~p~~ 156 (244)
++|.++ .+|..
T Consensus 261 s~N~l~-~ip~~ 271 (312)
T 1wwl_A 261 SFTGLK-QVPKG 271 (312)
T ss_dssp TTSCCS-SCCSS
T ss_pred CCCccC-hhhhh
Confidence 999888 56654
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.1e-21 Score=185.57 Aligned_cols=164 Identities=18% Similarity=0.265 Sum_probs=126.8
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCcccc-----------------cCCcccc--CCCCCCEEEccCCcCCccCCcccC
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSG-----------------EIPSNWE--GLEELMVKDLSNNSLSGGIPASFC 63 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~ 63 (244)
.|++++ +|..++++++|++|++++|.+++ .+|+.+. ++++|++|++++|.+.+.+|..++
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 366766 78888888888888888888886 2777766 888888888888888878888888
Q ss_pred CCCCCcEEEccCCC-CCC-chhhhccCCC-------CCceecCCCCCCCCCCCc--ccCCCCCCCeecCCCCCCCCCCcc
Q 042227 64 SLPSLVWLKLSKND-LSG-ELFVALQNCT-------AFTGFPEFITEPSGRIPE--NIGSLQKLETLDLSSNHLSGPIPP 132 (244)
Q Consensus 64 ~l~~L~~L~Ls~N~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~ 132 (244)
++++|++|++++|+ +++ .+|..+..++ +|+.|+++.|.++ .+|. .++++++|++|++++|+++ .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 88888888888887 877 7777666655 8888888888888 7787 7888888888888888888 777
Q ss_pred ccCCCCceE-EEcccCCCcCCCCCC-ccccc-CCCCccccCCC
Q 042227 133 SMSSMTRLS-LNLSYNDLTGPIPLT-KQFQT-FNDPSIYMGNA 172 (244)
Q Consensus 133 ~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~-l~~~~~~~~n~ 172 (244)
.+..+++|+ |++++|.++ .+|.. ..+.. +.... +.+|.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~-Ls~N~ 630 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG-FSHNK 630 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE-CCSSC
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE-CcCCC
Confidence 788888888 888888888 56543 33333 44333 34443
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=8e-21 Score=163.52 Aligned_cols=145 Identities=26% Similarity=0.239 Sum_probs=76.3
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWE-GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
+|.++ .+|..+. +.++.|+|++|++++..+..+. ++++|+.|++++|+|++..+..|..+++|++|+|++|++++.
T Consensus 27 ~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 27 KQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp SSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC
Confidence 34443 3444332 2355556666555544444444 555555666655555544444555555556666655555544
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCcccc---CCCCceE-EEcccCCCc
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM---SSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l---~~l~~L~-L~ls~N~l~ 150 (244)
.+..+..+++|+.|+++.|.+++..|..|..+++|++|++++|++++..+..+ ..+++|+ |++++|.++
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 44455555555555555555555555555555555555555555553222222 3455555 555555555
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=163.12 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=117.2
Q ss_pred CCCCcC-CccCCcCCC-------CCCCccEEEccCCcccccCCccc--cCCCCCCEEEccCCcCCccCCcccCCC-----
Q 042227 1 LSRSLL-NGTIPPSMS-------EMKNFSFLDLSNNILSGEIPSNW--EGLEELMVKDLSNNSLSGGIPASFCSL----- 65 (244)
Q Consensus 1 Ls~N~l-~~~ip~~l~-------~l~~L~~L~l~~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l----- 65 (244)
|++|.+ .+.+|..+. ++++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 70 L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~ 148 (312)
T 1wwl_A 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLK 148 (312)
T ss_dssp CCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCC
T ss_pred cccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhc
Confidence 456677 355666554 68888888888888888778765 7888888888888888855 7777666
Q ss_pred CCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCC--CCccc--CCCCCCCeecCCCCCCCC--CCc-cccCCCC
Q 042227 66 PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGR--IPENI--GSLQKLETLDLSSNHLSG--PIP-PSMSSMT 138 (244)
Q Consensus 66 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~ls~N~l~~--~~p-~~l~~l~ 138 (244)
++|++|++++|++++..+..+..+++|+.|+++.|.+.+. +|..+ +.+++|++|++++|++++ .++ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 8888888888888877778888888888888888887764 23334 788888888888888883 112 2345678
Q ss_pred ceE-EEcccCCCcCCCC
Q 042227 139 RLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 139 ~L~-L~ls~N~l~~~~p 154 (244)
+|+ |++++|.+++.+|
T Consensus 229 ~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CCSEEECTTSCCCSSCC
T ss_pred CCCEEECCCCcCCcccc
Confidence 888 8888888887664
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=8.8e-21 Score=173.14 Aligned_cols=153 Identities=20% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCcCCccC--CcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCCC
Q 042227 2 SRSLLNGTI--PPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 2 s~N~l~~~i--p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l 78 (244)
++|.+++.. |..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|. .+..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 455555443 55566666666666666666655555666666666666666666544332 355566666666666666
Q ss_pred CCchhhhccCCCCCceecCCCCCCCCC---CCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 79 SGELFVALQNCTAFTGFPEFITEPSGR---IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 79 ~~~~~~~l~~l~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
++..|..+..+++|+.|+++.|.+++. .+..+..+++|++|++++|++++..|..+..+++|+ +++++|++++..|
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 555555566666666666666655541 223455556666666666666555555555566666 6666665555443
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2.5e-20 Score=154.31 Aligned_cols=176 Identities=20% Similarity=0.151 Sum_probs=143.3
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 59 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 57899987777789999999999999999998777889999999999999999996666689999999999999999987
Q ss_pred c-hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCC----eecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227 81 E-LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE----TLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 81 ~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
. +|..+..+++|+.|+++.|.+++..+..+..+++|+ +|++++|++++. +.......+|+ +++++|.+++..+
T Consensus 139 ~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCH
Confidence 4 689999999999999999999987777776666666 888999999844 44344445788 9999999886554
Q ss_pred CC-cccccCCCCccccCCCCCCCCC
Q 042227 155 LT-KQFQTFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 155 ~~-~~~~~l~~~~~~~~n~~~c~~~ 178 (244)
.. ..+..+.... +.+|+..|..+
T Consensus 218 ~~~~~l~~L~~L~-l~~N~~~c~c~ 241 (276)
T 2z62_A 218 GIFDRLTSLQKIW-LHTNPWDCSCP 241 (276)
T ss_dssp TTTTTCCSCCEEE-CCSSCBCCCTT
T ss_pred hHhcccccccEEE-ccCCcccccCC
Confidence 33 3455555555 67788777654
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=167.91 Aligned_cols=157 Identities=25% Similarity=0.284 Sum_probs=96.1
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc--cCCcccCCCCCCcEEEccCCCCCCchhh-hccCCCC
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSKNDLSGELFV-ALQNCTA 91 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~ 91 (244)
..+++|++|++++|++++..|..+.++++|+.|++++|.+++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 455666666666666666566666666666666666666664 3445566666666666666666654443 3566666
Q ss_pred CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC--cccccCCCCccc
Q 042227 92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT--KQFQTFNDPSIY 168 (244)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~--~~~~~l~~~~~~ 168 (244)
|+.|+++.|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|+ +++++|+++. +|.. ..+..+.... +
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~-l 475 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIW-L 475 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE-C
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEE-C
Confidence 66666666666655555443 56677777777776 5666666677777 7777777763 3332 2333344344 4
Q ss_pred cCCCCCCC
Q 042227 169 MGNADLCS 176 (244)
Q Consensus 169 ~~n~~~c~ 176 (244)
.+|+..|.
T Consensus 476 ~~N~~~c~ 483 (520)
T 2z7x_B 476 HTNPWDCS 483 (520)
T ss_dssp CSSCBCCC
T ss_pred cCCCCccc
Confidence 56665553
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.3e-21 Score=171.17 Aligned_cols=154 Identities=24% Similarity=0.290 Sum_probs=138.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKND 77 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~ 77 (244)
|++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 57899999999999999999999999999996 5567899999999999999999975665 48889999999999999
Q ss_pred CCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccc-cCCCCceE-EEcccCCCcCCCCC
Q 042227 78 LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS-MSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 78 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
+++..|..+. ++|+.|+++.|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+ +++++|+++|.++.
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9988877665 79999999999999 78888889999999999999999 56765 89999999 99999999998875
Q ss_pred Ccc
Q 042227 156 TKQ 158 (244)
Q Consensus 156 ~~~ 158 (244)
.+.
T Consensus 487 ~~~ 489 (520)
T 2z7x_B 487 IDY 489 (520)
T ss_dssp HHH
T ss_pred hHH
Confidence 444
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=168.21 Aligned_cols=174 Identities=18% Similarity=0.113 Sum_probs=117.1
Q ss_pred CcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchh
Q 042227 4 SLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF 83 (244)
Q Consensus 4 N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 83 (244)
|.+++..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 33333333344444444444444444443444333334456666666677763333567788888888888888887777
Q ss_pred hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccC
Q 042227 84 VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTF 162 (244)
Q Consensus 84 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l 162 (244)
..+..+++|+.|+++.|.+++..|..+..+++|+.|++++|++++..+..|..+++|+ +++++|++.+.++..+.+.+.
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~ 345 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR 345 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTT
T ss_pred hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhh
Confidence 7788888888888888888887788888888888888888888866666778888888 888888888877655544444
Q ss_pred CCCccccCCCCCCCCC
Q 042227 163 NDPSIYMGNADLCSPP 178 (244)
Q Consensus 163 ~~~~~~~~n~~~c~~~ 178 (244)
.... +.++...|..|
T Consensus 346 ~~~~-~~~~~~~C~~p 360 (477)
T 2id5_A 346 WRLN-FNRQQPTCATP 360 (477)
T ss_dssp TSSC-CTTCCCBEEES
T ss_pred hccc-cCccCceeCCc
Confidence 3333 55566666543
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=2.1e-20 Score=169.58 Aligned_cols=133 Identities=21% Similarity=0.304 Sum_probs=66.5
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc--cCCcccCCCCCCcEEEccCCCCCCchhh-hccCCCC
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSKNDLSGELFV-ALQNCTA 91 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~ 91 (244)
..+++|++|++++|++++..|..+.++++|+.|++++|.+++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344555555555555555455555555555555555555553 1223455555555555555555542332 3444555
Q ss_pred CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
|+.|+++.|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|+ +++++|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 55555555555444433332 34555555555555 4444444555555 555555555
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.2e-20 Score=171.18 Aligned_cols=181 Identities=24% Similarity=0.299 Sum_probs=147.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKND 77 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~ 77 (244)
|++|++++.+|..+.++++|++|++++|++++ .+|..+.++++|+.|++++|.+++.+|. .+..+++|++|++++|+
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 57899999999999999999999999999996 2356789999999999999999974664 58899999999999999
Q ss_pred CCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccc-cCCCCceE-EEcccCCCcCCCCC
Q 042227 78 LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS-MSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 78 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
+++..|..+. ++|+.|+++.|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+ +++++|++.|.++.
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9987776654 79999999999998 68887889999999999999999 67766 89999999 99999999999886
Q ss_pred Ccccc-cCCCCccccCCCCCCCCCCCCCCCC
Q 042227 156 TKQFQ-TFNDPSIYMGNADLCSPPLTTKCSS 185 (244)
Q Consensus 156 ~~~~~-~l~~~~~~~~n~~~c~~~~~~~c~~ 185 (244)
.+.++ +.........+...|+.+....|..
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 516 IRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp HHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred HHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 65533 2211110112223346666667765
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=160.19 Aligned_cols=155 Identities=26% Similarity=0.147 Sum_probs=136.6
Q ss_pred CCCCcCCccCCcCCC-CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMS-EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|+|++..+..+. ++++|++|++++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 689999988888887 9999999999999999777788999999999999999999766778999999999999999999
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCccc---CCCCCCCeecCCCCCCCCCCccccCCCCce--E-EEcccCCCcCCC
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENI---GSLQKLETLDLSSNHLSGPIPPSMSSMTRL--S-LNLSYNDLTGPI 153 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L--~-L~ls~N~l~~~~ 153 (244)
+..+..+..+++|+.|+++.|.+++..+..+ ..+++|+.|++++|++++..+..+..++.+ + +++++|++.+.+
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 8889999999999999999999996544445 679999999999999996555678888874 7 999999999887
Q ss_pred CC
Q 042227 154 PL 155 (244)
Q Consensus 154 p~ 155 (244)
..
T Consensus 206 ~l 207 (361)
T 2xot_A 206 KL 207 (361)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.6e-21 Score=172.05 Aligned_cols=146 Identities=21% Similarity=0.210 Sum_probs=83.9
Q ss_pred CCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC-CchhhhccCCCC
Q 042227 14 MSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS-GELFVALQNCTA 91 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~ 91 (244)
+..+++|++|++++|.+++..| ..+.++++|+.|++++|.+++..|..+..+++|++|++++|+++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4555555555555555554333 34555555666666666555555555555666666666666554 345555566666
Q ss_pred CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
|+.|+++.|.+++..|..+..+++|++|++++|++++..+..+..+++|+ +++++|+++|.+|....+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 66666666666555555566666666666666666654445555566666 666666666665554443
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=9.1e-21 Score=179.39 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=138.5
Q ss_pred CCCCcCCc-----------------cCCcCCC--CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCc-cCC
Q 042227 1 LSRSLLNG-----------------TIPPSMS--EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSG-GIP 59 (244)
Q Consensus 1 Ls~N~l~~-----------------~ip~~l~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p 59 (244)
|++|+|++ .+|+.++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|
T Consensus 455 Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP 534 (876)
T 4ecn_A 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534 (876)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH
T ss_pred CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccch
Confidence 46788887 4999988 99999999999999999999999999999999999998 987 788
Q ss_pred cccCCC-------CCCcEEEccCCCCCCchhh--hccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCC
Q 042227 60 ASFCSL-------PSLVWLKLSKNDLSGELFV--ALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI 130 (244)
Q Consensus 60 ~~~~~l-------~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 130 (244)
..++.+ ++|+.|++++|+++ .+|. .+.++++|+.|+++.|.++ .+| .++.+++|+.|++++|+++ .+
T Consensus 535 ~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l 610 (876)
T 4ecn_A 535 ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI 610 (876)
T ss_dssp HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC
T ss_pred HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc
Confidence 766655 49999999999999 8888 9999999999999999999 888 8999999999999999999 89
Q ss_pred ccccCCCCc-eE-EEcccCCCcCCCCCC
Q 042227 131 PPSMSSMTR-LS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 131 p~~l~~l~~-L~-L~ls~N~l~~~~p~~ 156 (244)
|..+..+++ |+ |++++|.++ .+|..
T Consensus 611 p~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 611 PEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp CTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred hHHHhhccccCCEEECcCCCCC-cCchh
Confidence 999999999 99 999999999 66643
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=6.8e-20 Score=167.21 Aligned_cols=145 Identities=25% Similarity=0.254 Sum_probs=121.6
Q ss_pred cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccC
Q 042227 9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQN 88 (244)
Q Consensus 9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 88 (244)
.+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5666553 47899999999999766778999999999999999998666778899999999999999998777778899
Q ss_pred CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCC-CCccccCCCCceE-EEcccCCCcCCCCC
Q 042227 89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG-PIPPSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
+++|++|+++.|.+++..+..|+++++|++|++++|++++ .+|..+..++.|+ |++++|.+++..|.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9999999999999987766778999999999999999874 4577888889999 99999998876553
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=4.6e-20 Score=145.59 Aligned_cols=131 Identities=18% Similarity=0.310 Sum_probs=79.9
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666666 444 4566666666666666554 2235556666666666666666555666666666666
Q ss_pred ecCCCCCCCCCCCcccCCCCCCCeecCCCCC-CCCCCccccCCCCceE-EEcccCCCcC
Q 042227 95 FPEFITEPSGRIPENIGSLQKLETLDLSSNH-LSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
|+++.|.+++..|..++.+++|++|++++|+ ++ .+| .+..+++|+ +++++|.+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 6666666665555566666666666666665 44 444 456666666 6666666654
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=6.6e-20 Score=169.55 Aligned_cols=177 Identities=21% Similarity=0.153 Sum_probs=103.3
Q ss_pred CCCCcCCccCC-cCCCCCCCccEEEccCCccccc--------------------------CCccccCCCCCCEEEccCCc
Q 042227 1 LSRSLLNGTIP-PSMSEMKNFSFLDLSNNILSGE--------------------------IPSNWEGLEELMVKDLSNNS 53 (244)
Q Consensus 1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~N~l~~~--------------------------~p~~~~~l~~L~~L~L~~n~ 53 (244)
|++|.+++.+| ..+.++++|++|++++|++++. .|..+.++++|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 35666665554 4555666666666666655543 34455555566666666666
Q ss_pred CCccCCcccCCCCCCcEEEccCCCCCCchh--------hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCC
Q 042227 54 LSGGIPASFCSLPSLVWLKLSKNDLSGELF--------VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125 (244)
Q Consensus 54 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~ 125 (244)
+++..+..+..+++|++|++++|++++..+ ..+..+++|+.|+++.|.++...+..|.++++|+.|++++|+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 654444555566666666666666553211 124556666666666666663333346667777777777777
Q ss_pred CCCCCccccCCCCceE-EEcccCCCcCCCCCCc--ccccCCCCccccCCCCCCCCC
Q 042227 126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTK--QFQTFNDPSIYMGNADLCSPP 178 (244)
Q Consensus 126 l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~--~~~~l~~~~~~~~n~~~c~~~ 178 (244)
+++..+..|..+++|+ +++++|.+++..|... .+..+.... +.+|+..|..+
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~-l~~N~~~c~c~ 626 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD-MRFNPFDCTCE 626 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE-CTTCCCCBCCC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE-ccCCCcccCCc
Confidence 7744444566667777 7777777766544321 234444445 67788887654
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=7.7e-20 Score=167.18 Aligned_cols=103 Identities=18% Similarity=0.117 Sum_probs=65.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 45666666666666666777777777776666555566666666666666666663333445666666666666666666
Q ss_pred chhhhccCCCCCceecCCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPS 103 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~ 103 (244)
..|..+..+++|+.|+++.|.++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCS
T ss_pred CChhhhhcCCcCcEEECcCCCCC
Confidence 66666666666666666666544
No 54
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.1e-19 Score=145.98 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=132.5
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT 100 (244)
Q Consensus 21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n 100 (244)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|+++.|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67999999999 6787665 78999999999999766778999999999999999999888999999999999999999
Q ss_pred CCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-CcccccCCCCccccCCCCCCC
Q 042227 101 EPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQFQTFNDPSIYMGNADLCS 176 (244)
Q Consensus 101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~~~l~~~~~~~~n~~~c~ 176 (244)
.++...+..|..+++|++|++++|++++..|..|..+++|+ |++++|.+++..+. ...+..+.... +.+|+..|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH-LAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE-eCCCCcCCC
Confidence 99976666689999999999999999988889999999999 99999999977664 33345555555 678887774
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=160.35 Aligned_cols=150 Identities=22% Similarity=0.244 Sum_probs=111.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..+..|.++++|++|++++|.+++..+..|.++++|+.|++++|+++...+..|..+++|++|++++|+++.
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 57899988888899999999999999999997777889999999999999999996556689999999999999999986
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
..+..+..+++|+.|+++.|+..+.++ ..|.++++|++|++++|+++ .+|. +..+++|+ |++++|.+++.
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCcc
Confidence 666677777777777777644332333 34556666666666666655 3332 44555555 55555555543
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-19 Score=157.42 Aligned_cols=103 Identities=18% Similarity=0.117 Sum_probs=68.4
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++...+..+..+++|++|++++|++++
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 45666666555667777777777777777776556666777777777777777763333335667777777777777766
Q ss_pred chhhhccCCCCCceecCCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPS 103 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~ 103 (244)
..+..+..+++|+.|+++.|.++
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCS
T ss_pred cChhhccCCCCCCEEECCCCcCC
Confidence 66666666677777666666654
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.2e-19 Score=154.02 Aligned_cols=135 Identities=17% Similarity=0.292 Sum_probs=67.4
Q ss_pred CCCCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227 13 SMSEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCT 90 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 90 (244)
.+.++++|++|++++|.++. ..+..+.++++|+.|++++|.++ .+|..+. ++|++|++++|++++..+..+..++
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence 34444444444444444432 33344444444444444444444 3333322 4455555555555544455555555
Q ss_pred CCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 91 AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
+|+.|+++.|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+ +++++|++++
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 5555555555555444444555555555555555555 4555555555555 5555555553
No 58
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=6.1e-20 Score=144.46 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=115.4
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCc-cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPS-NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
+++|.++ .+|..+.. +|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|+++
T Consensus 15 ~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 15 CTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp CTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred cCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 4678884 78876654 899999999999966554 4899999999999999999888999999999999999999999
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 131 (244)
+..+..+..+++|+.|+++.|.+++..|..+..+++|++|++++|.+++..+
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8888889999999999999999999999999999999999999999996544
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.5e-19 Score=159.93 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=113.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc--------------------
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-------------------- 60 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-------------------- 60 (244)
|++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.++...+.
T Consensus 106 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 345555555555555556666666666655544444455555555555555554422111
Q ss_pred ---------------------------ccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCC
Q 042227 61 ---------------------------SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSL 113 (244)
Q Consensus 61 ---------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 113 (244)
.+..+++|++|++++|++++..|..+..+++|+.|+++.|.+++..+..|..+
T Consensus 186 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 23344566677777777777778899999999999999999999889999999
Q ss_pred CCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 114 QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 114 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
++|++|++++|++++..+..+..+++|+ +++++|++.+.+...
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999999999999977777889999999 999999999887654
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=5e-20 Score=168.12 Aligned_cols=156 Identities=22% Similarity=0.184 Sum_probs=119.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++++|++++
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 56788887777788888888888888888887777788888888888888888876777788888888888888888887
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE---EEcccCCCcCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS---LNLSYNDLTGPIPLT 156 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~---L~ls~N~l~~~~p~~ 156 (244)
..+..+.++++|+.|+++.|.+++..+..+..+++|++|++++|++++..|..++.++.|+ +++++|.+++..|..
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 6677788888888888888888764333344488888888888888866666666666654 678888887766654
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=1e-19 Score=157.83 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..+.++++|++|++++|.++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++
T Consensus 100 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 57888888778888999999999999999995444456889999999999999987777788888999999999888875
Q ss_pred c
Q 042227 81 E 81 (244)
Q Consensus 81 ~ 81 (244)
.
T Consensus 180 ~ 180 (390)
T 3o6n_A 180 V 180 (390)
T ss_dssp C
T ss_pred c
Confidence 3
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.6e-20 Score=166.46 Aligned_cols=170 Identities=23% Similarity=0.238 Sum_probs=102.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc------------------------
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG------------------------ 56 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------------------ 56 (244)
|++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++
T Consensus 41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~ 118 (487)
T 3oja_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118 (487)
T ss_dssp CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC
T ss_pred eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc
Confidence 57788887777788888888888888888886544 6677777666666665542
Q ss_pred ----------------cCCcccCCCCCCcEEEccCCCCCCchhhhcc-CCCCCceecCCCCCCCCCCCcccCCCCCCCee
Q 042227 57 ----------------GIPASFCSLPSLVWLKLSKNDLSGELFVALQ-NCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119 (244)
Q Consensus 57 ----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 119 (244)
..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. | ....+++|++|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEE
Confidence 2233444445555555555555544444443 455555555555555533 1 12346666666
Q ss_pred cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCccccCCCCCCC
Q 042227 120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCS 176 (244)
Q Consensus 120 ~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~~n~~~c~ 176 (244)
++++|.+++ +|..+..+++|+ |++++|.+++.++....+..+.... +.+|+..|+
T Consensus 197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~-l~~N~l~c~ 252 (487)
T 3oja_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD-LRGNGFHCG 252 (487)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE-CTTCCBCHH
T ss_pred ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE-cCCCCCcCc
Confidence 666666663 444466677777 7777777775333333334444444 566666653
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3.2e-19 Score=151.53 Aligned_cols=147 Identities=21% Similarity=0.164 Sum_probs=89.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++++|++++
T Consensus 61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~ 137 (332)
T 2ft3_A 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK 137 (332)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC
T ss_pred CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc
Confidence 4667777666667777777888888877777666777777777777777777776 4444333 455555555555554
Q ss_pred chhhhccCCCCCceecCCCCC----------------------------------------------CCCCCCcccCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITE----------------------------------------------PSGRIPENIGSLQ 114 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~----------------------------------------------l~~~~p~~~~~l~ 114 (244)
..+..+..+++|+.|+++.|. +++..+..+..++
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred cCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCC
Confidence 434444444444444444443 4333344455566
Q ss_pred CCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 115 KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 115 ~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
+|++|++++|++++..+..+..+++|+ +++++|.++
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 666666666666654445566666666 666666665
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1e-19 Score=166.36 Aligned_cols=149 Identities=23% Similarity=0.194 Sum_probs=105.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 106 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 57788888777778888888888888888885555556888888888888888887777778888888888888887764
Q ss_pred chh-----------------------------------------------------------hhccCCCCCceecCCCCC
Q 042227 81 ELF-----------------------------------------------------------VALQNCTAFTGFPEFITE 101 (244)
Q Consensus 81 ~~~-----------------------------------------------------------~~l~~l~~L~~L~l~~n~ 101 (244)
... ..+..+++|+.|++++|.
T Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc
Confidence 321 224455666666666666
Q ss_pred CCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 102 PSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 102 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
+++..|..++.+++|+.|++++|.++ .+|..+..+++|+ |++++|.++
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC
T ss_pred cCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC
Confidence 66666666666666666666666666 3455555566666 666666665
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=4.8e-20 Score=168.25 Aligned_cols=155 Identities=22% Similarity=0.214 Sum_probs=136.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|+|++..|..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|++++..+..|.++++|++|++++|++++
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 138 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence 68999998778899999999999999999997778889999999999999999996666789999999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce----E-EEcccCCCcCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL----S-LNLSYNDLTGPIP 154 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L----~-L~ls~N~l~~~~p 154 (244)
..+..++++++|+.|+++.|.+++ ..|..++.+++|++|++++|++++..+..+..+..+ . ++++.|.+....+
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~ 218 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 218 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCc
Confidence 777889999999999999999976 467889999999999999999997777776654332 3 8889998876544
Q ss_pred C
Q 042227 155 L 155 (244)
Q Consensus 155 ~ 155 (244)
.
T Consensus 219 ~ 219 (635)
T 4g8a_A 219 G 219 (635)
T ss_dssp T
T ss_pred c
Confidence 3
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3.2e-19 Score=151.49 Aligned_cols=120 Identities=25% Similarity=0.298 Sum_probs=102.7
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|+++ .
T Consensus 41 ~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 116 (332)
T 2ft3_A 41 SDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116 (332)
T ss_dssp CSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-S
T ss_pred CCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-c
Confidence 566675 6777664 78999999999999777889999999999999999999777999999999999999999998 5
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
+|..+. ++|+.|+++.|.+++..+..+.++++|++|++++|.++
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 665554 89999999999998766666888888888888877774
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=4.1e-19 Score=150.65 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=82.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcc-------------------
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS------------------- 61 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~------------------- 61 (244)
|++|++++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVR 137 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBC
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccC
Confidence 4677787666667888888888888888888666778888888888888888776 44443
Q ss_pred ---cCCCCCCcEEEccCCCCCC--chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCC
Q 042227 62 ---FCSLPSLVWLKLSKNDLSG--ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS 136 (244)
Q Consensus 62 ---~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 136 (244)
+..+++|++|++++|.++. ..+..+..+++|+.|+++.|.++. +|..+. ++|++|++++|++++..|..+..
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 3444455555555555432 334444445444444444443331 111111 23333333344443333344444
Q ss_pred CCceE-EEcccCCCcCC
Q 042227 137 MTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 137 l~~L~-L~ls~N~l~~~ 152 (244)
+++|+ |++++|.+++.
T Consensus 215 l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCcCcee
Confidence 44555 55555554443
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=153.47 Aligned_cols=168 Identities=23% Similarity=0.189 Sum_probs=131.8
Q ss_pred CCCCcCCccCCcCC--CCCCCccEEEccCCcccccCC----ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEcc
Q 042227 1 LSRSLLNGTIPPSM--SEMKNFSFLDLSNNILSGEIP----SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74 (244)
Q Consensus 1 Ls~N~l~~~ip~~l--~~l~~L~~L~l~~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 74 (244)
|++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 98 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 98 LEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp EESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred eeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 46889999999888 889999999999999997554 344578999999999999987777899999999999999
Q ss_pred CCCCCCc--hh--hhccCCCCCceecCCCCCCCCCCCc----ccCCCCCCCeecCCCCCCCCCCccccCCC---CceE-E
Q 042227 75 KNDLSGE--LF--VALQNCTAFTGFPEFITEPSGRIPE----NIGSLQKLETLDLSSNHLSGPIPPSMSSM---TRLS-L 142 (244)
Q Consensus 75 ~N~l~~~--~~--~~l~~l~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~ls~N~l~~~~p~~l~~l---~~L~-L 142 (244)
+|++.+. ++ ..+..+++|+.|+++.|.++. ++. .++.+++|++|++++|++++..|..+..+ ++|+ |
T Consensus 178 ~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 178 DNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 9998753 32 234688999999999999863 333 25678999999999999997778777776 6899 9
Q ss_pred EcccCCCcCCCCCCcccccCCCCccccCCC
Q 042227 143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNA 172 (244)
Q Consensus 143 ~ls~N~l~~~~p~~~~~~~l~~~~~~~~n~ 172 (244)
++++|.++ .+|.... ..+.... ..+|.
T Consensus 257 ~Ls~N~l~-~lp~~~~-~~L~~L~-Ls~N~ 283 (310)
T 4glp_A 257 NLSFAGLE-QVPKGLP-AKLRVLD-LSSNR 283 (310)
T ss_dssp ECCSSCCC-SCCSCCC-SCCSCEE-CCSCC
T ss_pred ECCCCCCC-chhhhhc-CCCCEEE-CCCCc
Confidence 99999998 5565432 4454444 44443
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=157.24 Aligned_cols=148 Identities=22% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|++++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|++++.
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 139 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc
Confidence 34444433333444445555555555544443344444444555555555544422222244444555555555444422
Q ss_pred hh-hhccCCCCCceecCCCCC-CCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCC
Q 042227 82 LF-VALQNCTAFTGFPEFITE-PSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDL 149 (244)
Q Consensus 82 ~~-~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l 149 (244)
.+ ..+..+++|+.|+++.|. +....+..++++++|++|++++|++++..|..+..+++|+ +++++|.+
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 22 234444444444444442 3333333444444444444444444444444444444444 44444443
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5e-19 Score=142.97 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=132.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF 98 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 98 (244)
..+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3578999999999 7777654 899999999999998778999999999999999999987767788999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-CcccccCCCCccccCCCCCCC
Q 042227 99 ITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQFQTFNDPSIYMGNADLCS 176 (244)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~~~l~~~~~~~~n~~~c~ 176 (244)
.|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+ |++++|.+++..+. ...+..+.... +.+|+..|.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY-LFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-CTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE-eeCCCccCC
Confidence 99999877777899999999999999999 8899999999999 99999999966553 23345555555 678887775
Q ss_pred C
Q 042227 177 P 177 (244)
Q Consensus 177 ~ 177 (244)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 4
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=153.86 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=100.5
Q ss_pred CCCcCCccCC----cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc--C--CcccCCCCCCcEEEc
Q 042227 2 SRSLLNGTIP----PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGG--I--PASFCSLPSLVWLKL 73 (244)
Q Consensus 2 s~N~l~~~ip----~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L 73 (244)
++|.+++..| ..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. + +..+..+++|++|++
T Consensus 125 s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 125 RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 4566665444 2334567777777777777766666677777777777777776531 2 222356677777777
Q ss_pred cCCCCCCchhh----hccCCCCCceecCCCCCCCCCCCcccCCC---CCCCeecCCCCCCCCCCccccCCCCceE-EEcc
Q 042227 74 SKNDLSGELFV----ALQNCTAFTGFPEFITEPSGRIPENIGSL---QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLS 145 (244)
Q Consensus 74 s~N~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls 145 (244)
++|+++. ++. .+..+++|+.|+++.|.+++..|+.+..+ ++|++|++++|+++ .+|..+. ++|+ |+++
T Consensus 205 s~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 205 RNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 7777752 222 24566777777777777776666666555 47777777777777 5666553 5677 7777
Q ss_pred cCCCcCCCCCCcccccCCCCccccCCC
Q 042227 146 YNDLTGPIPLTKQFQTFNDPSIYMGNA 172 (244)
Q Consensus 146 ~N~l~~~~p~~~~~~~l~~~~~~~~n~ 172 (244)
+|++++. |....+..+.... +.+|+
T Consensus 281 ~N~l~~~-~~~~~l~~L~~L~-L~~N~ 305 (310)
T 4glp_A 281 SNRLNRA-PQPDELPEVDNLT-LDGNP 305 (310)
T ss_dssp SCCCCSC-CCTTSCCCCSCEE-CSSTT
T ss_pred CCcCCCC-chhhhCCCccEEE-CcCCC
Confidence 7777653 2233344444433 44443
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=144.66 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=118.7
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT 100 (244)
Q Consensus 21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n 100 (244)
+++++++|.++ .+|..+. ++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999998 6776554 68999999999998 78888999999999999999999888888999999999999999
Q ss_pred CCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 101 EPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
.+++..|..|..+++|++|++++|+++...+..|..+++|+ +++++|++.+.+...+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence 99988888899999999999999999965556789999999 999999999887654433
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=8.1e-20 Score=165.32 Aligned_cols=152 Identities=21% Similarity=0.202 Sum_probs=74.5
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++.
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred cCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC
Confidence 44445444444455555555555555555544444455555555555555555443344455555555555555555433
Q ss_pred hhhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce----E-EEcccCCCcCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL----S-LNLSYNDLTGPI 153 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L----~-L~ls~N~l~~~~ 153 (244)
.+..+.++++|++|+++.|.+++ .+|..++++++|++|++++|++++..+..++.+..| . +++++|.+++..
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 33345555555555555555443 244445555555555555555554334444444444 3 555555554433
No 74
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=144.29 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=119.6
Q ss_pred CCCCcCCccCC-cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIP-PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|+|++..| ..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 39 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 57899987765 45789999999999999999877779999999999999999999777788999999999999999999
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCC
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP 129 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 129 (244)
+..|..+..+++|+.|+++.|.+++..|..+..+++|++|++++|.++..
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 98899999999999999999999998899999999999999999999854
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.2e-19 Score=147.28 Aligned_cols=151 Identities=19% Similarity=0.120 Sum_probs=119.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCc-ccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNI-LSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKNDL 78 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l 78 (244)
|++|++++..+..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|++++|++
T Consensus 38 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp EESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred EeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 35788887666688889999999999996 8866566888889999999988 888865567788889999999999988
Q ss_pred CCchhhhccCCCCCc---eecCCCC-CCCCCCCcccCCCCCCC-eecCCCCCCCCCCccccCCCCceE-EEcccCC-CcC
Q 042227 79 SGELFVALQNCTAFT---GFPEFIT-EPSGRIPENIGSLQKLE-TLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND-LTG 151 (244)
Q Consensus 79 ~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~-l~~ 151 (244)
++ +|. +..+++|+ .|+++.| .+++..+..|.++++|+ +|++++|+++ .+|......++|+ +++++|+ +++
T Consensus 118 ~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 118 KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCE
T ss_pred cc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCccc
Confidence 85 555 77788887 8889888 88766666788889999 9999999988 5555443447888 9999995 774
Q ss_pred CCC
Q 042227 152 PIP 154 (244)
Q Consensus 152 ~~p 154 (244)
..+
T Consensus 195 i~~ 197 (239)
T 2xwt_C 195 IDK 197 (239)
T ss_dssp ECT
T ss_pred CCH
Confidence 433
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=2.3e-19 Score=165.93 Aligned_cols=155 Identities=21% Similarity=0.164 Sum_probs=124.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++..+..+.++++|++|++++|.+++..|+.+.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence 56788877666678888888888888888887778888888888888888888884444568888888888888888887
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC--CCCceE-EEcccCCCcCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS--SMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~--~l~~L~-L~ls~N~l~~~~p~ 155 (244)
..|..+.++++|+.|+++.|.+++..|..++++++|++|++++|++++..+..+. .+++|+ +++++|.+++..|.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 7777888888888888888888887778888888888888888888866555543 457888 88888888876654
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=1.1e-19 Score=163.85 Aligned_cols=149 Identities=20% Similarity=0.161 Sum_probs=99.8
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 82 (244)
+|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..
T Consensus 14 ~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 45554 5565543 56777777777777666666777777777777777777655666777777777777777777666
Q ss_pred hhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCc-cccCCCCceE-EEcccCCCcCCCC
Q 042227 83 FVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIP-PSMSSMTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 83 ~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~-L~ls~N~l~~~~p 154 (244)
+..+..+++|++|+++.|.+++ ..|..++++++|++|++++|++.+.+| ..+..+++|+ +++++|.+++.+|
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 6667777777777777777665 345566777777777777776433443 4566677777 7777777766544
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=5.5e-19 Score=159.35 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=137.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..|..+.++++|++|++++|++++..|+.|.++++|++|++++|.+++..|..++++++|++|++++|++++
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 67899998889999999999999999999998888899999999999999999997777779999999999999999986
Q ss_pred -chhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 81 -ELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 81 -~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
..|..+.++++|+.|+++.|.+.+.+| ..+.++++|++|++++|++++..|..+..+++|+ +++++|.+.
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 457789999999999999998655555 6799999999999999999988999999999999 999999875
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.5e-19 Score=146.65 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=131.9
Q ss_pred CCCCc-CCccCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCc---EEEccC
Q 042227 1 LSRSL-LNGTIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLV---WLKLSK 75 (244)
Q Consensus 1 Ls~N~-l~~~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~ 75 (244)
|++|+ ++...+..+.++++|++|++++ |.+++..+..|.++++|++|++++|.++ .+|. +..+++|+ +|++++
T Consensus 62 l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 62 VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITD 139 (239)
T ss_dssp EECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEES
T ss_pred CCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCC
Confidence 35776 7766666889999999999999 9999766788999999999999999998 4776 88888888 999999
Q ss_pred C-CCCCchhhhccCCCCCc-eecCCCCCCCCCCCcccCCCCCCCeecCCCCC-CCCCCccccCCC-CceE-EEcccCCCc
Q 042227 76 N-DLSGELFVALQNCTAFT-GFPEFITEPSGRIPENIGSLQKLETLDLSSNH-LSGPIPPSMSSM-TRLS-LNLSYNDLT 150 (244)
Q Consensus 76 N-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~l~~l-~~L~-L~ls~N~l~ 150 (244)
| ++++..+..+..+++|+ .|+++.|.++ .+|......++|++|++++|+ +++..+..+..+ ++|+ +++++|+++
T Consensus 140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9 99877777899999999 9999999998 555544344899999999995 996556788999 9999 999999998
Q ss_pred CCCCCCcccccCC
Q 042227 151 GPIPLTKQFQTFN 163 (244)
Q Consensus 151 ~~~p~~~~~~~l~ 163 (244)
+. |.. .+..+.
T Consensus 219 ~l-~~~-~~~~L~ 229 (239)
T 2xwt_C 219 AL-PSK-GLEHLK 229 (239)
T ss_dssp CC-CCT-TCTTCS
T ss_pred cC-Chh-HhccCc
Confidence 54 433 344443
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=8.8e-20 Score=154.22 Aligned_cols=150 Identities=21% Similarity=0.183 Sum_probs=93.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc----------------ccCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA----------------SFCS 64 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----------------~~~~ 64 (244)
|++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+. ....
T Consensus 41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~ 118 (317)
T 3o53_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118 (317)
T ss_dssp CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC
T ss_pred CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc
Confidence 56788887777778888888888888888875443 77777777777777776531100 0112
Q ss_pred CCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCccc-CCCCCCCeecCCCCCCCCCCccccCCCCceE-E
Q 042227 65 LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-L 142 (244)
Q Consensus 65 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L 142 (244)
+++|++|++++|++++..+..+..+++|+.|+++.|.+++..+..+ ..+++|++|++++|++++ ++. ...+++|+ +
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEE
Confidence 4556666666666665555566666667777776666665544444 345666666666666652 222 22355555 6
Q ss_pred EcccCCCcCCCC
Q 042227 143 NLSYNDLTGPIP 154 (244)
Q Consensus 143 ~ls~N~l~~~~p 154 (244)
++++|.+++..+
T Consensus 197 ~Ls~N~l~~l~~ 208 (317)
T 3o53_A 197 DLSSNKLAFMGP 208 (317)
T ss_dssp ECCSSCCCEECG
T ss_pred ECCCCcCCcchh
Confidence 666666654433
No 81
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=149.68 Aligned_cols=151 Identities=25% Similarity=0.202 Sum_probs=131.5
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|++++.
T Consensus 39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 466676 6777655 5899999999999976666899999999999999999977788899999999999999999977
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCC-CCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSN-HLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N-~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
.+..+..+++|+.|+++.|.+++..+ ..+..+++|++|++++| .++...+..+..+++|+ +++++|.+++..|.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 66779999999999999999985433 47899999999999999 57755677899999999 99999999887654
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=168.96 Aligned_cols=152 Identities=21% Similarity=0.255 Sum_probs=72.5
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccC-CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEI-PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
++|.+++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|++++|.+++..|+.|.++++|++|++++|.+++
T Consensus 32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 344454444445555555555555555333222 4445555555555555555544444555555555555555555544
Q ss_pred chhhh--ccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCC--CceE-EEcccCCCcCCC
Q 042227 81 ELFVA--LQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSM--TRLS-LNLSYNDLTGPI 153 (244)
Q Consensus 81 ~~~~~--l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l--~~L~-L~ls~N~l~~~~ 153 (244)
..+.. +.++++|+.|+++.|.+++..+ ..++++++|++|++++|.+++..+..+..+ ++|+ +++++|.+.+..
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 33332 4455555555555555444322 234555555555555555544444444443 3444 444444444433
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=6.9e-19 Score=138.78 Aligned_cols=144 Identities=13% Similarity=0.196 Sum_probs=124.3
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 51 l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 51 LANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp EESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred ccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 3577887 666 6889999999999999876 3 3478899999999999999997788999999999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
..+..+..+++|+.|+++.|.+.+.+| .+..+++|++|++++|++++ ++ .+..+++|+ +++++|++.+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 889999999999999999998444566 68999999999999999994 55 788999999 9999999864
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=2.2e-18 Score=145.25 Aligned_cols=130 Identities=23% Similarity=0.341 Sum_probs=70.0
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 93 (244)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|++++..+ +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 4555555555555555552 22 34555555555555555552 222 5555555555555555554322 55556666
Q ss_pred eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCC
Q 042227 94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI 153 (244)
Q Consensus 94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~ 153 (244)
.|+++.|.+++. +. +..+++|++|++++|++++ ++. +..+++|+ |++++|++++..
T Consensus 155 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 155 YLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred EEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc
Confidence 666666655542 22 5566666666666666653 332 55566666 666666665443
No 85
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=1.2e-18 Score=133.74 Aligned_cols=134 Identities=20% Similarity=0.132 Sum_probs=118.9
Q ss_pred CCCCccEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 16 EMKNFSFLDLSNNILS-GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 16 ~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
..++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4588999999999998 67888889999999999999999854 78899999999999999999878888888999999
Q ss_pred ecCCCCCCCCCC-CcccCCCCCCCeecCCCCCCCCCCc---cccCCCCceE-EEcccCCCcC
Q 042227 95 FPEFITEPSGRI-PENIGSLQKLETLDLSSNHLSGPIP---PSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 95 L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~-L~ls~N~l~~ 151 (244)
|+++.|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+ +++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998642 2679999999999999999995444 3789999999 9999998864
No 86
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=4.7e-18 Score=131.60 Aligned_cols=134 Identities=19% Similarity=0.136 Sum_probs=112.0
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227 20 FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI 99 (244)
Q Consensus 20 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 99 (244)
.+.+++++|.++ .+|..+. ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+++.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888888 5665443 6889999999998865566778889999999999999877777788899999999999
Q ss_pred CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
|.+++..+..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.+|..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 998877777789999999999999999965555678899999 999999999988743
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.9e-18 Score=143.41 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=117.4
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++. +| .+..+++|++|++++|++++. +. +..+++|+.|++++|.++ .+| .+..+++|++|++++|++++
T Consensus 53 l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 53 ANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp CTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC
T ss_pred ccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC
Confidence 45666753 33 477788999999999998854 33 888889999999999887 344 48888899999999998886
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
. ..+..+++|+.|+++.|.+++. ..+..+++|++|++++|++++. +. +..+++|+ |++++|.+++ +|....+
T Consensus 127 ~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l 199 (291)
T 1h6t_A 127 I--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LRALAGL 199 (291)
T ss_dssp C--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CGGGTTC
T ss_pred C--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC-ChhhccC
Confidence 4 4678888899999998888864 5688888899999999988854 33 88888888 9999998875 3333334
Q ss_pred ccCCCCccccCC
Q 042227 160 QTFNDPSIYMGN 171 (244)
Q Consensus 160 ~~l~~~~~~~~n 171 (244)
..+.... ..+|
T Consensus 200 ~~L~~L~-l~~n 210 (291)
T 1h6t_A 200 KNLDVLE-LFSQ 210 (291)
T ss_dssp TTCSEEE-EEEE
T ss_pred CCCCEEE-CcCC
Confidence 4444333 3444
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=8.8e-18 Score=141.50 Aligned_cols=151 Identities=17% Similarity=0.305 Sum_probs=124.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++. +| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++ .+..+++|++|++++|++++
T Consensus 48 l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 48 AFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp CTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC
T ss_pred eeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCC
Confidence 45677763 55 57889999999999999995 444 899999999999999998 444 68899999999999999986
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
. + .+..+++|+.|+++.|.+++..+ +..+++|++|++++|++++ ++. +..+++|+ |++++|.+++..+ ...+
T Consensus 122 ~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 194 (308)
T 1h6u_A 122 V-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASL 194 (308)
T ss_dssp C-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred c-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCC
Confidence 4 3 38999999999999999986533 8899999999999999994 555 88999999 9999999986544 3333
Q ss_pred ccCCC
Q 042227 160 QTFND 164 (244)
Q Consensus 160 ~~l~~ 164 (244)
..+..
T Consensus 195 ~~L~~ 199 (308)
T 1h6u_A 195 PNLIE 199 (308)
T ss_dssp TTCCE
T ss_pred CCCCE
Confidence 44433
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.1e-19 Score=167.70 Aligned_cols=144 Identities=26% Similarity=0.269 Sum_probs=122.1
Q ss_pred cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccC
Q 042227 9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQN 88 (244)
Q Consensus 9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 88 (244)
..|..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..++.+++|++|+|++|+|+ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34677889999999999999999 78888889999999999999999 89999999999999999999999 77999999
Q ss_pred CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce-E-EEcccCCCcCCCCCC
Q 042227 89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-S-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L-~-L~ls~N~l~~~~p~~ 156 (244)
+++|+.|+++.|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+... . +++++|.+++.+|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 999999999999997 788889999999999999999998888877665433 2 678888888877764
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=2.7e-18 Score=131.76 Aligned_cols=130 Identities=28% Similarity=0.280 Sum_probs=115.8
Q ss_pred CCCCcCC-ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLN-GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~-~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus 31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC
T ss_pred CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC
Confidence 5789998 88999999999999999999999965 78899999999999999999768888888999999999999998
Q ss_pred Cch-hhhccCCCCCceecCCCCCCCCCCC---cccCCCCCCCeecCCCCCCCCCCccc
Q 042227 80 GEL-FVALQNCTAFTGFPEFITEPSGRIP---ENIGSLQKLETLDLSSNHLSGPIPPS 133 (244)
Q Consensus 80 ~~~-~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~ls~N~l~~~~p~~ 133 (244)
+.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. .+|..
T Consensus 109 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 643 3789999999999999999996655 47899999999999999998 56654
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=7e-18 Score=141.02 Aligned_cols=140 Identities=26% Similarity=0.390 Sum_probs=123.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..+ +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + ..+..+++|+.|++++|++++
T Consensus 75 L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 75 LNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred ccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence 57899986443 8999999999999999995 44 48999999999999999984 4 468899999999999999986
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
. ..+..+++|+.|+++.|.+++..+ +..+++|++|++++|++++ ++. +..+++|+ +++++|+++..
T Consensus 149 ~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 5 679999999999999999997554 8999999999999999994 554 89999999 99999999753
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.75 E-value=1.2e-18 Score=131.11 Aligned_cols=129 Identities=23% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCCCccEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 16 EMKNFSFLDLSNNILS-GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 16 ~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999998 77888889999999999999999854 77889999999999999999878888888999999
Q ss_pred ecCCCCCCCCC-CCcccCCCCCCCeecCCCCCCCCCCc---cccCCCCceE-EEccc
Q 042227 95 FPEFITEPSGR-IPENIGSLQKLETLDLSSNHLSGPIP---PSMSSMTRLS-LNLSY 146 (244)
Q Consensus 95 L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~-L~ls~ 146 (244)
|+++.|.+++. .+..++.+++|++|++++|++++..+ ..+..+++|+ +++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998863 34778899999999999999985544 4688888888 88763
No 93
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=130.62 Aligned_cols=124 Identities=23% Similarity=0.225 Sum_probs=112.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++ .+|..+. ++|++|++++|.++ .+|..|.++++|+.|++++|.|++..+..|..+++|++|+|++|++++
T Consensus 17 ~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 17 CSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp CTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred cCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 3567776 6777654 68999999999999 788999999999999999999997777889999999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 128 (244)
..+..+..+++|+.|+++.|.++...+..|..+++|++|++++|.+..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888899999999999999999997666779999999999999999874
No 94
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=3.6e-17 Score=126.61 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=110.0
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 15 ~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp CSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence 566775 566544 37999999999999976667789999999999999999966667789999999999999999988
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 131 (244)
.+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|.+++..|
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77888999999999999999997666667899999999999999996543
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=9.9e-18 Score=142.83 Aligned_cols=138 Identities=22% Similarity=0.304 Sum_probs=67.8
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++.
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC
Confidence 4455543222 5566666666666666663 222 4455555555555555542222 44455555555555555433
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
.+ +..+++|+.|+++.|.+++. +.+..+++|++|++++|++++ + ..+..+++|+ +++++|.+++
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCG
T ss_pred cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCC
Confidence 22 44555555555555554432 234445555555555555542 2 2344445555 5555555443
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2e-17 Score=136.38 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=64.2
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 93 (244)
+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+++ ++. +..+++|++|++++|++++ ++... . ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-Cccc
Confidence 444555555555555555 333 34555555555555555552 222 5555555555555555553 22211 1 5555
Q ss_pred eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
.|+++.|.+++. +.+..+++|+.|++++|++++ ++ .+..+++|+ |++++|.+++.
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 555555555532 235555555555555555552 22 345555555 55555555543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.8e-17 Score=151.56 Aligned_cols=138 Identities=25% Similarity=0.300 Sum_probs=90.3
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.+.. +| .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.++ .+| .+..+++|+.|+|++|++++.
T Consensus 51 ~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 51 NNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp TTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred cCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCC
Confidence 4555542 33 46667777777777777774333 667777777777777776 333 566777777777777777642
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
..+..+++|+.|+++.|.+++. ..+..+++|+.|+|++|++++..| +..+++|+ |++++|.+++
T Consensus 125 --~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 125 --NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred --ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 3466677777777777776653 456667777777777777764433 66666777 7777776664
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=8.1e-18 Score=138.69 Aligned_cols=140 Identities=20% Similarity=0.235 Sum_probs=120.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++ .+| .+..+++|++|++++|++++. +. +..+++|+.|++++|+++ .+|.... ++|++|++++|++++
T Consensus 48 l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~~~--~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 48 GDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGIPS--ACLSRLFLDNNELRD 120 (263)
T ss_dssp CTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTCCC--SSCCEEECCSSCCSB
T ss_pred CcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcccc--CcccEEEccCCccCC
Confidence 4678886 456 688999999999999999954 44 899999999999999998 4554433 899999999999986
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI 153 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~ 153 (244)
. ..+..+++|+.|+++.|.+++. + .+..+++|++|++++|++++. ..+..+++|+ +++++|++++..
T Consensus 121 ~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 121 T--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp S--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred C--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 3 3699999999999999999864 4 688999999999999999964 7789999999 999999998763
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=4.8e-18 Score=151.78 Aligned_cols=144 Identities=14% Similarity=0.007 Sum_probs=125.6
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccC-CCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC-SLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 79 (244)
|++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 467777765443 468899999999999988888999999999999999999987888776 7999999999999998
Q ss_pred CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
+. + ....+++|+.|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+ +++++|++.+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcC
Confidence 65 2 344699999999999999975 445899999999999999999 5888899999999 9999999983
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.1e-17 Score=125.95 Aligned_cols=121 Identities=26% Similarity=0.280 Sum_probs=109.0
Q ss_pred CCCCcCC-ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLN-GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~-~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
+++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus 24 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence 5789998 89999999999999999999999965 77899999999999999999768888888999999999999999
Q ss_pred Cc-hhhhccCCCCCceecCCCCCCCCCCC---cccCCCCCCCeecCCC
Q 042227 80 GE-LFVALQNCTAFTGFPEFITEPSGRIP---ENIGSLQKLETLDLSS 123 (244)
Q Consensus 80 ~~-~~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~ls~ 123 (244)
+. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.||+++
T Consensus 102 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 74 45889999999999999999997655 4788999999999874
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=5.8e-18 Score=143.02 Aligned_cols=128 Identities=22% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhc-cCCCCCceec
Q 042227 18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVAL-QNCTAFTGFP 96 (244)
Q Consensus 18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~ 96 (244)
++|++|++++|.+++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|+.|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 5555555555555533222 23455555555555554444455555555555555555555444444 2455555555
Q ss_pred CCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227 97 EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
++.|.+++. +. ...+++|++|++++|+++ .+|..+..+++|+ +++++|.++.
T Consensus 176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred CCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc
Confidence 555555533 21 223555555555555555 3344455555555 5555555553
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=4.9e-17 Score=144.24 Aligned_cols=140 Identities=26% Similarity=0.395 Sum_probs=90.7
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
.+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|++++..+ +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 34555666666666666664332 5666666666666666663 332 6666777777777777765433 6677777
Q ss_pred ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCC
Q 042227 93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFN 163 (244)
Q Consensus 93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~ 163 (244)
+.|+++.|.+++..| +..+++|+.|++++|++++. ..+..+++|+ +++++|++++..| ...+..+.
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 378 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRIT 378 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCC
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCC
Confidence 777777777776544 66777777777777777743 4577777888 8888888877666 33334443
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=2.8e-17 Score=140.05 Aligned_cols=160 Identities=19% Similarity=0.339 Sum_probs=132.3
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++
T Consensus 184 l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 184 LNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred ccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC
Confidence 46788874 333 7889999999999999995433 7889999999999999984 444 8899999999999999986
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF 159 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~ 159 (244)
. ..+..+++|+.|++++|.+++. +.+..+++|++|++++|++++..+..+..+++|+ +++++|++++..| ...+
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l 332 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL 332 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGC
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhh
Confidence 4 5688999999999999999864 4588999999999999999988888899999999 9999999998766 4455
Q ss_pred ccCCCCccccCCC
Q 042227 160 QTFNDPSIYMGNA 172 (244)
Q Consensus 160 ~~l~~~~~~~~n~ 172 (244)
..+.... +.+|+
T Consensus 333 ~~L~~L~-l~~N~ 344 (347)
T 4fmz_A 333 SKMDSAD-FANQV 344 (347)
T ss_dssp TTCSEES-SSCC-
T ss_pred hccceee-hhhhc
Confidence 5555444 44543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=6.8e-17 Score=147.79 Aligned_cols=140 Identities=26% Similarity=0.395 Sum_probs=124.2
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++
T Consensus 72 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 72 LNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC
T ss_pred eeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC
Confidence 57899986544 8899999999999999994 44 68999999999999999984 4 458899999999999999997
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
. ..+..+++|+.|+++.|.+++..| +..+++|+.|+|++|++++ ++ .+..+++|+ |++++|++.+.
T Consensus 146 l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 146 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred c--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 5 689999999999999999997666 9999999999999999995 44 689999999 99999999865
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=7.1e-17 Score=146.51 Aligned_cols=136 Identities=22% Similarity=0.276 Sum_probs=65.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCccc-----------------C
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF-----------------C 63 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-----------------~ 63 (244)
|++|+|+ .+| ..+++|++|++++|.|++ +|. +.+ +|+.|++++|.+++ +|..+ .
T Consensus 87 Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~ 157 (571)
T 3cvr_A 87 ITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNNQLTMLPE 157 (571)
T ss_dssp CCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC
T ss_pred CcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCCccCcCCC
Confidence 3455555 444 234555555555555553 444 332 45555555555542 33300 0
Q ss_pred CCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCC-------CeecCCCCCCCCCCccccCC
Q 042227 64 SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL-------ETLDLSSNHLSGPIPPSMSS 136 (244)
Q Consensus 64 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~L~ls~N~l~~~~p~~l~~ 136 (244)
.+++|++|++++|++++ +|. +. ++|+.|+++.|.++ .+|. +.. +| +.|++++|+|+ .+|..+..
T Consensus 158 ~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~ 228 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS 228 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG
T ss_pred cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc
Confidence 23445555555555543 333 32 45555555555555 3444 332 44 55566666655 45555555
Q ss_pred CCceE-EEcccCCCcCCCC
Q 042227 137 MTRLS-LNLSYNDLTGPIP 154 (244)
Q Consensus 137 l~~L~-L~ls~N~l~~~~p 154 (244)
+++|+ |++++|++++.+|
T Consensus 229 l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SCTTEEEECCSSSCCHHHH
T ss_pred CCCCCEEEeeCCcCCCcCH
Confidence 66666 6666666655444
No 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=1.4e-16 Score=141.30 Aligned_cols=140 Identities=24% Similarity=0.349 Sum_probs=123.1
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.+++..| +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 46788876544 8899999999999999996443 8899999999999999985433 7899999999999999998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
..| +..+++|+.|+++.|.+++. ..+..+++|+.|++++|++++..| +..++.|+ +++++|++++.
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 766 78999999999999999875 468999999999999999997666 89999999 99999999974
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.3e-16 Score=142.12 Aligned_cols=127 Identities=27% Similarity=0.346 Sum_probs=93.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|.+++ +|..+. ++|++|++++|.|+ .+| ..+++|+.|++++|.+++ +|. +.. +|++|++++|++++
T Consensus 66 Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 66 LNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred eCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 57889986 887664 89999999999999 677 457999999999999995 777 654 88888888888886
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
+|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+ |++++|.|+
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred -CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 554 56777777777777765 444 35566666666666663 554 43 5555 555555555
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=3.2e-17 Score=153.05 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=106.9
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCC
Q 042227 26 SNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGR 105 (244)
Q Consensus 26 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 105 (244)
+.|.+. ..|+.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+++.|.++ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 334444 55788999999999999999998 78888889999999999999999 88999999999999999999999 7
Q ss_pred CCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 106 IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 106 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
+|..++.+++|++|+|++|.|+ .+|..|..+++|+ |++++|.+++.+|..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 8999999999999999999998 8899999999999 999999999887753
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=4.2e-17 Score=126.24 Aligned_cols=133 Identities=17% Similarity=0.110 Sum_probs=112.5
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
.+.++.+|++|++++|.++ .+|......++|+.|++++|.+++ + ..+..+++|++|++++|++++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567899999999999999 556533334499999999999995 4 688999999999999999996555566999999
Q ss_pred ceecCCCCCCCCCCCc--ccCCCCCCCeecCCCCCCCCCCccc----cCCCCceE-EEcccCCCc
Q 042227 93 TGFPEFITEPSGRIPE--NIGSLQKLETLDLSSNHLSGPIPPS----MSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 93 ~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~----l~~l~~L~-L~ls~N~l~ 150 (244)
+.|+++.|.+. .+|. .+..+++|++|++++|.++ .+|.. +..+++|+ +|+++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999996 4665 7889999999999999998 56764 88899999 999999875
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=1.2e-15 Score=135.27 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=44.6
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|.+++ +| .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++ ++ ++.+++|++|++++|++++.
T Consensus 50 s~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 50 HNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp CSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred cCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee
Confidence 4555553 23 35555555555555555553 22 4455555555555555552 22 44555555555555555432
Q ss_pred hhhhccCCCCCceecCCCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPS 103 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~ 103 (244)
+ +..+++|+.|+++.|.++
T Consensus 122 -~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 122 -D--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp -C--CTTCTTCCEEECTTSCCS
T ss_pred -c--CCCCCcCCEEECCCCccc
Confidence 2 444444444444444443
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=1.1e-15 Score=135.55 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=37.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
|++|++++. | ++.+++|++|++++|.+++. + +.++++|++|++++|.+++ +| ++.+++|++|++++|++++
T Consensus 71 Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 71 CTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred ccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence 345555542 2 55556666666666665532 2 5555555555555555553 33 4555555555555555543
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=4.5e-18 Score=144.26 Aligned_cols=147 Identities=19% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCccccc-CCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC-CC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGE-IPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN-DL 78 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l 78 (244)
+++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+
T Consensus 77 l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 77 CPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp CTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred cCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 456777666554 55678888888888887754 6677777888888888888887677777777888888888888 56
Q ss_pred CC-chhhhccCCCCCceecCCCC-CCCCC-CCcccCCCC-CCCeecCCCC--CCC-CCCccccCCCCceE-EEcccCC
Q 042227 79 SG-ELFVALQNCTAFTGFPEFIT-EPSGR-IPENIGSLQ-KLETLDLSSN--HLS-GPIPPSMSSMTRLS-LNLSYND 148 (244)
Q Consensus 79 ~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~L~~L~ls~N--~l~-~~~p~~l~~l~~L~-L~ls~N~ 148 (244)
++ .++..+..+++|+.|+++.| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+ |++++|.
T Consensus 156 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 65 35666777777888888777 66643 445556666 6777777776 343 23455555666666 6666666
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2e-18 Score=156.94 Aligned_cols=109 Identities=24% Similarity=0.247 Sum_probs=97.5
Q ss_pred CCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCC
Q 042227 43 ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS 122 (244)
Q Consensus 43 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 122 (244)
.|+.|++++|.++ .+|. ++.+++|+.|++++|+++ .+|..+..+++|+.|+++.|.+++ +| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5889999999998 5776 899999999999999998 788899999999999999999996 67 79999999999999
Q ss_pred CCCCCCCC-ccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 123 SNHLSGPI-PPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 123 ~N~l~~~~-p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
+|++++.. |..+..+++|+ |++++|++++.+|..
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999665 89999999999 999999999877754
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=3.2e-18 Score=145.14 Aligned_cols=148 Identities=22% Similarity=0.182 Sum_probs=113.3
Q ss_pred CCCCcCCcc-CCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCC-cCCc-cCCcccCCCCCCcEEEccCC-
Q 042227 1 LSRSLLNGT-IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNN-SLSG-GIPASFCSLPSLVWLKLSKN- 76 (244)
Q Consensus 1 Ls~N~l~~~-ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~Ls~N- 76 (244)
|++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 456777655 7777788888888888888888777777888888888888888 6764 35666777888888888888
Q ss_pred CCCCc-hhhhccCCC-CCceecCCCC--CCC-CCCCcccCCCCCCCeecCCCCC-CCCCCccccCCCCceE-EEcccCC
Q 042227 77 DLSGE-LFVALQNCT-AFTGFPEFIT--EPS-GRIPENIGSLQKLETLDLSSNH-LSGPIPPSMSSMTRLS-LNLSYND 148 (244)
Q Consensus 77 ~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~l~~l~~L~-L~ls~N~ 148 (244)
.+++. ++..+..++ +|+.|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+ |++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77754 567777888 8888888888 444 3456666778888888888888 6666677777788888 8888885
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=1.2e-16 Score=141.64 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=19.9
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEE 43 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 43 (244)
+++|.+ |.+|+.++++++|++|++++|.+++.+|..++++.+
T Consensus 18 l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~ 59 (454)
T 1jl5_A 18 RHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59 (454)
T ss_dssp -----------------CCHHHHHHHHHHHHHTSCTTSCCCHH
T ss_pred cccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchh
Confidence 456777 788888888888888888888888777777766543
No 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.6e-15 Score=116.80 Aligned_cols=110 Identities=22% Similarity=0.223 Sum_probs=82.1
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227 20 FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI 99 (244)
Q Consensus 20 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 99 (244)
.+++++++|.++ .+|..+. ++|++|++++|.|++..|..|..+++|++|++++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------- 68 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV------------------- 68 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-------------------
Confidence 467777777777 4665543 677777777777776666777777777777777777763
Q ss_pred CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
..+..|..+++|++|++++|++++..+..+..+++|+ |++++|++++.++..
T Consensus 69 -----l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 69 -----LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred -----cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 3344567888899999999999865566788888998 999999998887643
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=6.3e-15 Score=130.51 Aligned_cols=112 Identities=23% Similarity=0.272 Sum_probs=59.4
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|++++ +| .++++++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|++++
T Consensus 139 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 139 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-
T ss_pred cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-
Confidence 4555553 44 35556666666666666553 34322 355555555555552 44 35556666666666665553
Q ss_pred hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
+|.. .++|+.|+++.|.++ .+|+ ++.+++|++|++++|+++
T Consensus 210 l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 210 LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 2221 134555555555555 4443 556666666666666665
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=5.7e-19 Score=139.41 Aligned_cols=120 Identities=26% Similarity=0.318 Sum_probs=62.5
Q ss_pred CCcCCccCCc------CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC
Q 042227 3 RSLLNGTIPP------SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76 (244)
Q Consensus 3 ~N~l~~~ip~------~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 76 (244)
.|.++|.+|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|
T Consensus 27 ~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103 (198)
T ss_dssp EEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE
T ss_pred eeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC
Confidence 3444555444 45555556666666665553 44 5555555666666666555 45555555555566666666
Q ss_pred CCCCchhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCC
Q 042227 77 DLSGELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 77 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~ 127 (244)
++++ +| .+..+++|+.|+++.|.+++..+ ..+..+++|++|++++|+++
T Consensus 104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5553 23 34455555555555555443111 23445555555555555554
No 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=2.8e-15 Score=115.48 Aligned_cols=101 Identities=25% Similarity=0.272 Sum_probs=85.5
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++ .+|..+. ++|++|++++|+|++..|..|.++++|++|++++|+|++..+..|..+++|++|+|++|++++
T Consensus 16 ~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 16 CSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp CTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE
Confidence 4678887 5787664 899999999999998878899999999999999999996666778999999999999999984
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 128 (244)
. .+..|..+++|++|++++|.++.
T Consensus 93 ~------------------------~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 93 I------------------------PRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp C------------------------CTTTTTTCTTCCEEECCSSCBCT
T ss_pred e------------------------CHHHhcCCCCCCEEEeCCCCCCC
Confidence 2 23357778888888888888874
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.7e-17 Score=142.73 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC----ccccCCC-CCCEEEccCCcCCccCCcccCCC-----CCCcE
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP----SNWEGLE-ELMVKDLSNNSLSGGIPASFCSL-----PSLVW 70 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~ 70 (244)
|+.|.+++.+|..+...++|++|++++|.+++..+ +.+..++ +|++|++++|.+++..+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 46777777777766666668888888888775544 5666677 77888888777775555555543 77777
Q ss_pred EEccCCCCCCchhhhc----cCC-CCCceecCCCCCCCCCCCcc----cCC-CCCCCeecCCCCCCCCCCc----cccCC
Q 042227 71 LKLSKNDLSGELFVAL----QNC-TAFTGFPEFITEPSGRIPEN----IGS-LQKLETLDLSSNHLSGPIP----PSMSS 136 (244)
Q Consensus 71 L~Ls~N~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~p~~----~~~-l~~L~~L~ls~N~l~~~~p----~~l~~ 136 (244)
|++++|++++..+..+ ..+ ++|+.|+++.|.+++..+.. +.. .++|++|++++|++++..+ ..+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 7777777765544433 333 66777777777766544332 222 2466666666666653222 22233
Q ss_pred CC-ceE-EEcccCCCcCC
Q 042227 137 MT-RLS-LNLSYNDLTGP 152 (244)
Q Consensus 137 l~-~L~-L~ls~N~l~~~ 152 (244)
++ +|+ |++++|.+++.
T Consensus 165 ~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASK 182 (362)
T ss_dssp SCTTCCEEECTTSCGGGS
T ss_pred CCccccEeeecCCCCchh
Confidence 33 555 55555555443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.3e-15 Score=138.47 Aligned_cols=121 Identities=21% Similarity=0.195 Sum_probs=106.3
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227 19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF 98 (244)
Q Consensus 19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 98 (244)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999995 676 999999999999999999 899999999999999999999996 66 89999999999999
Q ss_pred CCCCCCCC-CcccCCCCCCCeecCCCCCCCCCCccc---cCCCCceE-EEc
Q 042227 99 ITEPSGRI-PENIGSLQKLETLDLSSNHLSGPIPPS---MSSMTRLS-LNL 144 (244)
Q Consensus 99 ~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~---l~~l~~L~-L~l 144 (244)
.|.+++.. |..++.+++|+.|++++|++++..|.. +..+++|+ |++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999877 999999999999999999999544321 23367777 653
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=2.8e-17 Score=142.28 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=20.9
Q ss_pred CCCCCccEEEccCCcccc----cCCccccCCCCCCEEEccCCcCC
Q 042227 15 SEMKNFSFLDLSNNILSG----EIPSNWEGLEELMVKDLSNNSLS 55 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 55 (244)
..+++|++|++++|.+++ .+|..+..+++|++|++++|.++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 445555555555555554 23444444555555555555543
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=6.1e-15 Score=114.05 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=79.0
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227 21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT 100 (244)
Q Consensus 21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n 100 (244)
+.+++++|+++ .+|..+. ++|+.|++++|.+++..|..|..+++|++|+|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------- 71 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-------------------- 71 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--------------------
Confidence 67788888876 5666554 677888888888876667777777888888888877763
Q ss_pred CCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227 101 EPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
..+..|..+++|++|++++|++++..+..+..+++|+ |++++|++.+.++.
T Consensus 72 ----i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 72 ----IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ----cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 2233467778888888888888854444578888888 88888888876653
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=4.8e-15 Score=114.64 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=79.5
Q ss_pred CEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCC
Q 042227 45 MVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSN 124 (244)
Q Consensus 45 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N 124 (244)
+.+++++|.++ .+|..+. ++|++|++++|++++ ..|..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITK------------------------LEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccc------------------------cCHHHhcCCcCCCEEECCCC
Confidence 57777777776 6666553 677777777777763 45677889999999999999
Q ss_pred CCCCCCccccCCCCceE-EEcccCCCcCCCCC-CcccccCCCCccccCCCCCCCC
Q 042227 125 HLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQFQTFNDPSIYMGNADLCSP 177 (244)
Q Consensus 125 ~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~~~l~~~~~~~~n~~~c~~ 177 (244)
++++..+..|..+++|+ |++++|.+++..+. ...+..+.... +.+|+..|..
T Consensus 68 ~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~-L~~N~~~c~~ 121 (174)
T 2r9u_A 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY-LYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCBCTTB
T ss_pred CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE-eCCCCccccc
Confidence 99965556678999999 99999999976654 34455666555 6778876654
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=1.8e-17 Score=143.51 Aligned_cols=151 Identities=22% Similarity=0.227 Sum_probs=98.6
Q ss_pred CCCCcCCc----cCCcCCCCCCCccEEEccCCcccccCCcc----ccCC---------CCCCEEEccCCcCC-ccCC---
Q 042227 1 LSRSLLNG----TIPPSMSEMKNFSFLDLSNNILSGEIPSN----WEGL---------EELMVKDLSNNSLS-GGIP--- 59 (244)
Q Consensus 1 Ls~N~l~~----~ip~~l~~l~~L~~L~l~~N~l~~~~p~~----~~~l---------~~L~~L~L~~n~l~-~~~p--- 59 (244)
|++|.+++ .+|..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|.++ +.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 46777776 36666777788888888888876433332 2233 67777777777776 3344
Q ss_pred cccCCCCCCcEEEccCCCCCC-----chhhhccCCCCCceecCCCCCCC----CCCCcccCCCCCCCeecCCCCCCCCC-
Q 042227 60 ASFCSLPSLVWLKLSKNDLSG-----ELFVALQNCTAFTGFPEFITEPS----GRIPENIGSLQKLETLDLSSNHLSGP- 129 (244)
Q Consensus 60 ~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~ls~N~l~~~- 129 (244)
..+..+++|++|++++|+++. ..+..+..+++|+.|+++.|.++ ..+|..+..+++|++|++++|++++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 355566777777777777762 23336667777777777777764 44566666777777777777777643
Q ss_pred ---CccccC--CCCceE-EEcccCCCcC
Q 042227 130 ---IPPSMS--SMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 130 ---~p~~l~--~l~~L~-L~ls~N~l~~ 151 (244)
++..+. .+++|+ |++++|.+++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 344442 366777 7777777765
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4.4e-15 Score=127.00 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=72.5
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCE-EEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMV-KDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
++|+|+..-+..|.++++|++|+|++|++.+.+| ..|.++++++. +.+++|+++...|+.|..+++|++|++++|+++
T Consensus 38 s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 38 VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence 4555553333345556666666666665543333 34555555543 344455555444555566666666666666555
Q ss_pred CchhhhccCCC--------------------------CCceecCCCCCCCCCCCcccCCCCCCCeecCCC-CCCCCCCc-
Q 042227 80 GELFVALQNCT--------------------------AFTGFPEFITEPSGRIPENIGSLQKLETLDLSS-NHLSGPIP- 131 (244)
Q Consensus 80 ~~~~~~l~~l~--------------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p- 131 (244)
...+..+.... .++.|+++.|.++. +|.......+|+++++++ |.++ .+|
T Consensus 118 ~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~ 195 (350)
T 4ay9_X 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPN 195 (350)
T ss_dssp SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCT
T ss_pred cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCH
Confidence 32222221111 23334444444442 233233334455555543 4444 333
Q ss_pred cccCCCCceE-EEcccCCCcC
Q 042227 132 PSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 132 ~~l~~l~~L~-L~ls~N~l~~ 151 (244)
..|..+++|+ ||+++|+++.
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCC
T ss_pred HHhccCcccchhhcCCCCcCc
Confidence 3456666666 6666666663
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=1.2e-14 Score=133.26 Aligned_cols=80 Identities=21% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEc
Q 042227 66 PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNL 144 (244)
Q Consensus 66 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~l 144 (244)
++|+.|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+ |++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 345555555555543 22 33455555555555555 2333 3456666666666666 5566666666666 666
Q ss_pred ccCCCcCCCC
Q 042227 145 SYNDLTGPIP 154 (244)
Q Consensus 145 s~N~l~~~~p 154 (244)
++|++++.+|
T Consensus 292 ~~N~l~~~~~ 301 (622)
T 3g06_A 292 EGNPLSERTL 301 (622)
T ss_dssp CSCCCCHHHH
T ss_pred cCCCCCCcCH
Confidence 6666665444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=3.1e-15 Score=115.62 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=102.5
Q ss_pred CCCCcCCccCCcCCCCCC-CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMK-NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
|++|.++ .+|. +..+. +|++|++++|.+++. +.+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 26 l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 26 LRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp CTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred eeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence 5788888 4554 44544 999999999999964 67899999999999999999554455689999999999999997
Q ss_pred Cchhh--hccCCCCCceecCCCCCCCCCCCcc----cCCCCCCCeecCCCCCCC
Q 042227 80 GELFV--ALQNCTAFTGFPEFITEPSGRIPEN----IGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 80 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~ls~N~l~ 127 (244)
.+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 102 -~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 102 -ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp -CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred -cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4555 8999999999999999998 45654 889999999999999875
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=5.7e-17 Score=139.34 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=89.1
Q ss_pred CCCCcCCccCC----cCCCCCC-CccEEEccCCcccccCCccccCC-----CCCCEEEccCCcCCccCCcc----cCCC-
Q 042227 1 LSRSLLNGTIP----PSMSEMK-NFSFLDLSNNILSGEIPSNWEGL-----EELMVKDLSNNSLSGGIPAS----FCSL- 65 (244)
Q Consensus 1 Ls~N~l~~~ip----~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~----~~~l- 65 (244)
|++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+.. +..+
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 108 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence 46677765554 5566666 77777777777776555555543 77777777777776544443 3333
Q ss_pred CCCcEEEccCCCCCCchhhhc----cC-CCCCceecCCCCCCCCCC----CcccCCCC-CCCeecCCCCCCCCCCcccc-
Q 042227 66 PSLVWLKLSKNDLSGELFVAL----QN-CTAFTGFPEFITEPSGRI----PENIGSLQ-KLETLDLSSNHLSGPIPPSM- 134 (244)
Q Consensus 66 ~~L~~L~Ls~N~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----p~~~~~l~-~L~~L~ls~N~l~~~~p~~l- 134 (244)
++|++|++++|++++..+..+ .. .++|+.|+++.|.+++.. +..+..++ +|++|++++|++++..+..+
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 677777777777765444333 23 246777777777666432 22233343 66666666666664444332
Q ss_pred ---CCC-CceE-EEcccCCCcC
Q 042227 135 ---SSM-TRLS-LNLSYNDLTG 151 (244)
Q Consensus 135 ---~~l-~~L~-L~ls~N~l~~ 151 (244)
... ++|+ |++++|.+++
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCCCEEECCCCCCCh
Confidence 223 3666 6666666654
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=8.3e-15 Score=125.32 Aligned_cols=149 Identities=23% Similarity=0.120 Sum_probs=108.6
Q ss_pred CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcE-EEccCCCCCC
Q 042227 3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVW-LKLSKNDLSG 80 (244)
Q Consensus 3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~ 80 (244)
+|+++ .+|..+ .+++++|+|++|+|+...++.|.++++|++|+|++|.+.+.+| ..|.+++++++ +.++.|+++.
T Consensus 18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 56676 678766 3689999999999995555689999999999999999876665 57889998875 6677899998
Q ss_pred chhhhccCCCCCceecCCCCCCCCCCCccc-------------------------CCC-CCCCeecCCCCCCCCCCcccc
Q 042227 81 ELFVALQNCTAFTGFPEFITEPSGRIPENI-------------------------GSL-QKLETLDLSSNHLSGPIPPSM 134 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-------------------------~~l-~~L~~L~ls~N~l~~~~p~~l 134 (244)
..|..+..+++|+.|+++.|.+....+..+ ..+ ..++.|++++|+++ .++...
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhh
Confidence 888999999999999999988764333222 222 24566777777776 455444
Q ss_pred CCCCceE-EEcccCCCcCCCCC
Q 042227 135 SSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 135 ~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
....+|+ +++++|+..+.+|.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCT
T ss_pred ccccchhHHhhccCCcccCCCH
Confidence 4455666 77765443345554
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=1.3e-13 Score=126.45 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=54.3
Q ss_pred CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227 1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
+++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|++++
T Consensus 47 ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 47 VGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred ecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence 4567776 6666554 67777777777777 4554 4567777777777776 4554 45666777777776664
Q ss_pred chhhhccCCCCCceecCCCCCCC
Q 042227 81 ELFVALQNCTAFTGFPEFITEPS 103 (244)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~ 103 (244)
+|. .+++|+.|+++.|+++
T Consensus 116 -l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 116 -LPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCS
T ss_pred -CCC---CCCCcCEEECCCCCCC
Confidence 222 3344455555554444
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.6e-17 Score=130.97 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=117.5
Q ss_pred CCCCCccEEEccCCcccccCCc------cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccC
Q 042227 15 SEMKNFSFLDLSNNILSGEIPS------NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQN 88 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 88 (244)
.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3456777788888888877776 89999999999999999994 77 8889999999999999998 67888888
Q ss_pred CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc--cccCCCCceE-EEcccCCCcCCCCC
Q 042227 89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP--PSMSSMTRLS-LNLSYNDLTGPIPL 155 (244)
Q Consensus 89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~~l~~l~~L~-L~ls~N~l~~~~p~ 155 (244)
+++|+.|+++.|.+++ +| .+..+++|++|++++|++++ ++ ..+..+++|+ +++++|++++.+|.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 8999999999999986 45 58889999999999999994 44 4788999999 99999999887765
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=2.4e-13 Score=115.74 Aligned_cols=103 Identities=19% Similarity=0.102 Sum_probs=60.8
Q ss_pred EEEccCC-cccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227 22 FLDLSNN-ILSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI 99 (244)
Q Consensus 22 ~L~l~~N-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 99 (244)
.++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+++.
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466665 666 4555 66666666666664 666644445666666666666666666655555555555555555555
Q ss_pred CCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227 100 TEPSGRIPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
|.+++..+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555543333344443 666666666665
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=1.5e-13 Score=117.01 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=96.5
Q ss_pred CEEEccCC-cCCccCCcccCCCCCCcEEEccC-CCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCC
Q 042227 45 MVKDLSNN-SLSGGIPASFCSLPSLVWLKLSK-NDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS 122 (244)
Q Consensus 45 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 122 (244)
..++.+++ +++ .+|. +..+++|+.|+|++ |++++..+..|..+++|+.|+++.|.+++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688888 898 6888 99999999999996 99998888999999999999999999999888899999999999999
Q ss_pred CCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227 123 SNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT 156 (244)
Q Consensus 123 ~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~ 156 (244)
+|+|++..+..+..++ |+ |++.+|++.+.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 9999965555666666 99 999999999877643
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=7.2e-16 Score=135.96 Aligned_cols=151 Identities=16% Similarity=0.067 Sum_probs=104.7
Q ss_pred CCCCcCCcc----CCcCCCCCCCccEEEccCCcccccC-----CccccCCCCCCEEEccCCcCCcc----CCcccCCCCC
Q 042227 1 LSRSLLNGT----IPPSMSEMKNFSFLDLSNNILSGEI-----PSNWEGLEELMVKDLSNNSLSGG----IPASFCSLPS 67 (244)
Q Consensus 1 Ls~N~l~~~----ip~~l~~l~~L~~L~l~~N~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~ 67 (244)
|++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++. ++..+..+++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 467777653 5666777888899999998887532 22233578888888888888743 5667777888
Q ss_pred CcEEEccCCCCCCchhhhccC-----CCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCCCccccCC--
Q 042227 68 LVWLKLSKNDLSGELFVALQN-----CTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGPIPPSMSS-- 136 (244)
Q Consensus 68 L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~-- 136 (244)
|++|++++|.+++..+..+.. .++|+.|+++.|.+++. ++..+..+++|++|++++|++++..+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 888888888886544443333 25788888888887754 4555666778888888888776443333332
Q ss_pred ---CCceE-EEcccCCCcC
Q 042227 137 ---MTRLS-LNLSYNDLTG 151 (244)
Q Consensus 137 ---l~~L~-L~ls~N~l~~ 151 (244)
.+.|+ |++++|.+++
T Consensus 366 ~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp TSTTCCCCEEECTTSCCCH
T ss_pred cCCCCceEEEECCCCCCCh
Confidence 56777 8888887764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=1.6e-15 Score=133.66 Aligned_cols=152 Identities=15% Similarity=0.081 Sum_probs=113.7
Q ss_pred CCCCcCCccCCcCCC-----CCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCCccC-----CcccCCCC
Q 042227 1 LSRSLLNGTIPPSMS-----EMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLSGGI-----PASFCSLP 66 (244)
Q Consensus 1 Ls~N~l~~~ip~~l~-----~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~ 66 (244)
|++|.+++..+..+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 456776644333332 356899999999999863 4667778899999999999887432 33344688
Q ss_pred CCcEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCCCCcccC-----CCCCCCeecCCCCCCCCC----Cccc
Q 042227 67 SLVWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGRIPENIG-----SLQKLETLDLSSNHLSGP----IPPS 133 (244)
Q Consensus 67 ~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p~~ 133 (244)
+|++|++++|++++. ++..+..+++|+.|+++.|.+++..+..+. ..++|++|++++|.+++. ++..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 999999999999864 677788899999999999987654333222 336899999999999854 4566
Q ss_pred cCCCCceE-EEcccCCCcCC
Q 042227 134 MSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 134 l~~l~~L~-L~ls~N~l~~~ 152 (244)
+..+++|+ +++++|.+++.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHH
T ss_pred HhhCCCccEEEccCCccccc
Confidence 77788999 99999988754
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.6e-14 Score=123.46 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=82.0
Q ss_pred CCccEEEccCCcccccCCcc-ccCCCCCCEEEccCCcCCccCCccc-----CCCCCCcEEEccCCCCCC----chhhhcc
Q 042227 18 KNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASF-----CSLPSLVWLKLSKNDLSG----ELFVALQ 87 (244)
Q Consensus 18 ~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~~~~~l~ 87 (244)
++|++|+|++|.++...... ...+++|+.|+|++|.++......+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 57777777777776432222 2234567777777777763322222 235677777777777754 2444556
Q ss_pred CCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227 88 NCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 88 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
.+++|+.|+++.|.++.. ++..+...++|++|++++|.+++. ++..+...+.|+ |++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 677777777777776542 234455666777777777777632 233344556777 777777765
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=5.3e-11 Score=100.68 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=68.3
Q ss_pred CCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCC-eecCCCCCCCCCCccccCCCCceE-E
Q 042227 65 LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE-TLDLSSNHLSGPIPPSMSSMTRLS-L 142 (244)
Q Consensus 65 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~p~~l~~l~~L~-L 142 (244)
+++|+.+++++|+++...+.+|..+.+|+.+.+..| +...-+..|.++.+|+ .+++.+ .++..-+..|.++++|+ +
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 578888888888888666678888999999988887 6655556788899998 999888 67645567888899999 9
Q ss_pred EcccCCCcC
Q 042227 143 NLSYNDLTG 151 (244)
Q Consensus 143 ~ls~N~l~~ 151 (244)
++++|.++.
T Consensus 303 ~l~~n~i~~ 311 (329)
T 3sb4_A 303 LATGDKITT 311 (329)
T ss_dssp EECSSCCCE
T ss_pred EeCCCccCc
Confidence 988888763
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.1e-10 Score=98.64 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=88.2
Q ss_pred CCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc-eecCCCCCCCCCCCcccCCCCCCCee
Q 042227 41 LEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT-GFPEFITEPSGRIPENIGSLQKLETL 119 (244)
Q Consensus 41 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L 119 (244)
+++|+.+++++|+++...+..|.++++|+.+++.+| ++...+.+|..+.+|+ .+.+.. .++..-+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999998555578999999999999998 7767778899999999 999887 6665556889999999999
Q ss_pred cCCCCCCCCCCccccCCCCceE-EEc
Q 042227 120 DLSSNHLSGPIPPSMSSMTRLS-LNL 144 (244)
Q Consensus 120 ~ls~N~l~~~~p~~l~~l~~L~-L~l 144 (244)
++++|.++...+..|.++++|+ +..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999966667899999998 753
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.05 E-value=7.8e-12 Score=113.42 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=96.2
Q ss_pred CCCCCccEEEccCCcccccCCccccC-CCCCCEEEcc----CCcCCcc-----CCcccCCCCCCcEEEccCC--CCCCch
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLS----NNSLSGG-----IPASFCSLPSLVWLKLSKN--DLSGEL 82 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N--~l~~~~ 82 (244)
..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|+++++ .+++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 34677788888777777655555544 7788888885 5666642 3334566788888888743 366555
Q ss_pred hhhccC-CCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCC
Q 042227 83 FVALQN-CTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGP 152 (244)
Q Consensus 83 ~~~l~~-l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~ 152 (244)
+..+.. +++|+.|+++.|.+++ .++..+..+++|++|++++|.+++. ++.....+++|+ |++++|+++..
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 555443 7888888888888775 3445567788899999999988643 334445678888 99999988754
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=2.6e-12 Score=110.90 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=102.5
Q ss_pred CCCccEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCCccCCcc-cCCCCCCcEEEccCCCCCCchhhhc----
Q 042227 17 MKNFSFLDLSNNILSGEIPSNWE-----GLEELMVKDLSNNSLSGGIPAS-FCSLPSLVWLKLSKNDLSGELFVAL---- 86 (244)
Q Consensus 17 l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~l---- 86 (244)
++.|+.|++++|.++......+. ..++|+.|+|++|.++...... ...+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999999854333332 2379999999999997432222 2345689999999999986544444
Q ss_pred -cCCCCCceecCCCCCCCC----CCCcccCCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCcC
Q 042227 87 -QNCTAFTGFPEFITEPSG----RIPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLTG 151 (244)
Q Consensus 87 -~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~~ 151 (244)
...++|+.|+++.|.++. .++..+..+++|++|++++|.+++. ++..+...+.|+ |++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 346889999999999864 2444557789999999999999742 355677788999 9999999974
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=1.2e-10 Score=105.55 Aligned_cols=133 Identities=16% Similarity=0.099 Sum_probs=70.6
Q ss_pred CCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCC----ccCCcccCCCCCCcEEEccCCCCCCchhhhcc
Q 042227 16 EMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLS----GGIPASFCSLPSLVWLKLSKNDLSGELFVALQ 87 (244)
Q Consensus 16 ~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 87 (244)
.+++|++|++++|.+++. ++.....+++|+.|++++|.++ +.++..+..+++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 455666666666665543 2223344566666666666654 2333344455666666666666553 455566
Q ss_pred CCCCCceecCCCCCCC---CCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227 88 NCTAFTGFPEFITEPS---GRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 88 ~l~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
.+++|+.|.++..... +..+..+..+++|+.|+++++... .+|..+..+++|+ |++++|.++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence 6666666655432111 122233445555555555554333 4555566666666 677666653
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.83 E-value=3.4e-11 Score=109.20 Aligned_cols=133 Identities=12% Similarity=0.071 Sum_probs=92.4
Q ss_pred CCCccEEEccCCcccccCCcccc-CCCCCCEEEcc--C----CcCCc-----cCCcccCCCCCCcEEEccCCCCCCchhh
Q 042227 17 MKNFSFLDLSNNILSGEIPSNWE-GLEELMVKDLS--N----NSLSG-----GIPASFCSLPSLVWLKLSKNDLSGELFV 84 (244)
Q Consensus 17 l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~--~----n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 84 (244)
+++|++|+++.|.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 67788888877877765444443 47888888888 3 45551 1222356678888888876 66666666
Q ss_pred hccC-CCCCceecCCCCCCCCCCCccc-CCCCCCCeecCCCCCCCCCCcc-ccCCCCceE-EEcccCCCc
Q 042227 85 ALQN-CTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPP-SMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 85 ~l~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-~l~~l~~L~-L~ls~N~l~ 150 (244)
.+.. +++|+.|+++.|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+ |++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6665 8888899888888765444333 5688899999999988643333 344578888 999998874
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=6.4e-10 Score=86.46 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=52.5
Q ss_pred cCCCCCCEEEccCC-cCCc----cCCcccCCCCCCcEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCC----
Q 042227 39 EGLEELMVKDLSNN-SLSG----GIPASFCSLPSLVWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGR---- 105 (244)
Q Consensus 39 ~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~---- 105 (244)
...+.|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|+.|+++.|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33444444444444 4431 1223333444455555555544421 223333344455555555544421
Q ss_pred CCcccCCCCCCCeecC--CCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227 106 IPENIGSLQKLETLDL--SSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 106 ~p~~~~~l~~L~~L~l--s~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
+...+...++|++|++ ++|.++.. +...+...+.|+ |++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455556666666 55666532 223344445666 666666553
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=5e-10 Score=101.47 Aligned_cols=61 Identities=25% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCCccEEEccCC-ccccc-CCccccCCCCCCEEEccCCcCCccCCcc----cCCCCCCcEEEccCCC
Q 042227 17 MKNFSFLDLSNN-ILSGE-IPSNWEGLEELMVKDLSNNSLSGGIPAS----FCSLPSLVWLKLSKND 77 (244)
Q Consensus 17 l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~ 77 (244)
+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.. ...+++|+.|++++|.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 455555555555 33321 2222334555555555555544322222 2244455555555554
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.8e-09 Score=83.87 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=92.5
Q ss_pred CCCCCCCccEEEccCC-ccccc----CCccccCCCCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCCCCc--
Q 042227 13 SMSEMKNFSFLDLSNN-ILSGE----IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDLSGE-- 81 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~-- 81 (244)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.. .+.+.+...++|++|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3566889999999999 88752 34556778999999999999974 2445566678999999999999863
Q ss_pred --hhhhccCCCCCceecC--CCCCCCCC----CCcccCCCCCCCeecCCCCCCC
Q 042227 82 --LFVALQNCTAFTGFPE--FITEPSGR----IPENIGSLQKLETLDLSSNHLS 127 (244)
Q Consensus 82 --~~~~l~~l~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 127 (244)
+...+...++|+.|++ +.|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5678888999999999 88988753 3345566789999999999886
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=1.4e-07 Score=81.99 Aligned_cols=140 Identities=12% Similarity=0.113 Sum_probs=92.8
Q ss_pred CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227 2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81 (244)
Q Consensus 2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 81 (244)
++|+++..-...|. ..+|+.+.+..+ ++......|.++++|+.+++..+ ++..-...|.+ .+|+.+.+ .+.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence 45566533333444 578888888754 66455677888888888888765 44333455655 67888888 3446555
Q ss_pred hhhhccCCCCCceecCCCCCCC-----CCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccC
Q 042227 82 LFVALQNCTAFTGFPEFITEPS-----GRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYN 147 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N 147 (244)
...+|..+++|+.+.+..+.+. ...+..|.++++|+.+++.+ .++..-...|.++.+|+ +++..|
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 5677888888888877766543 22345677788888888874 46644456777777887 777554
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=1.9e-09 Score=88.58 Aligned_cols=41 Identities=34% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCCCCCEEEccCCcCCc--cCCcccCCCCCCcEEEccCCCCCC
Q 042227 40 GLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSKNDLSG 80 (244)
Q Consensus 40 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~ 80 (244)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 45566666666666664 333444556666666666666654
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=1.9e-07 Score=81.09 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=75.6
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227 13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF 92 (244)
Q Consensus 13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 92 (244)
.|.++++|+.+++.+|.++......|. ..+|+.+.+..+ ++..-...|.++++|+.+++..| ++..-..+|.. .+|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 444555555555555555522222333 355555555533 43233345555566666666543 33333344444 455
Q ss_pred ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC-----CCCccccCCCCceE-EEcccC
Q 042227 93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS-----GPIPPSMSSMTRLS-LNLSYN 147 (244)
Q Consensus 93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~p~~l~~l~~L~-L~ls~N 147 (244)
+.+.+ .+.++..-...|.++++|+.+++.+|.+. ...+..|.++++|+ +++..+
T Consensus 251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc
Confidence 55555 23344334567899999999999998775 24466899999999 999853
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=3.5e-09 Score=90.88 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=69.1
Q ss_pred CCCCCCccEEEccCCccc---------ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhh
Q 042227 14 MSEMKNFSFLDLSNNILS---------GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFV 84 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 84 (244)
+..+++|+.|.+.++... +.+...+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 344566666666554321 112233455667777777666311 2332 2 256777777776666544334
Q ss_pred hcc--CCCCCceecCCCC--CCCCC-----CCccc--CCCCCCCeecCCCCCCCCCCccccC---CCCceE-EEcccCCC
Q 042227 85 ALQ--NCTAFTGFPEFIT--EPSGR-----IPENI--GSLQKLETLDLSSNHLSGPIPPSMS---SMTRLS-LNLSYNDL 149 (244)
Q Consensus 85 ~l~--~l~~L~~L~l~~n--~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~~~~p~~l~---~l~~L~-L~ls~N~l 149 (244)
.+. .+++|+.|.+..+ ...+. +...+ ..+++|++|++++|.+++..+..+. .+++|+ |++++|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 443 5667777665421 11111 11112 2356777777777666532222222 356666 77777766
Q ss_pred cC
Q 042227 150 TG 151 (244)
Q Consensus 150 ~~ 151 (244)
.+
T Consensus 292 ~d 293 (362)
T 2ra8_A 292 TD 293 (362)
T ss_dssp BH
T ss_pred Ch
Confidence 54
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.54 E-value=5.9e-08 Score=79.60 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=54.2
Q ss_pred CCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCcccCCCC--CCcEEEccCCCCCCchh
Q 042227 15 SEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLP--SLVWLKLSKNDLSGELF 83 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~ 83 (244)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 457899999999999997 4567777899999999999999853 2344444 89999999999986443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=2.3e-07 Score=79.51 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=96.2
Q ss_pred CCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccC--CCCCCcEEEccC--CCCCCc----
Q 042227 10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC--SLPSLVWLKLSK--NDLSGE---- 81 (244)
Q Consensus 10 ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~---- 81 (244)
++..+..+++|+.|++++|.-. .++. +. +++|+.|++..+.++......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344566799999999998412 2343 33 79999999999988743333343 689999999863 222211
Q ss_pred -hhhhc--cCCCCCceecCCCCCCCCCCCccc---CCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227 82 -LFVAL--QNCTAFTGFPEFITEPSGRIPENI---GSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT 150 (244)
Q Consensus 82 -~~~~l--~~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~ 150 (244)
+...+ ..+++|+.|.+..|.+.+..+..+ ..+++|++|+++.|.+++. ++..+..+++|+ |++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11222 357899999999988764332222 3578999999999999853 344445678999 999999876
Q ss_pred C
Q 042227 151 G 151 (244)
Q Consensus 151 ~ 151 (244)
.
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=2.4e-06 Score=65.44 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=39.9
Q ss_pred CCCEEEccCCcCCccCCcccCCCCCCcEEEccCCC-CCCchhhhccCC----CCCceecCCCCC-CCCCCCcccCCCCCC
Q 042227 43 ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND-LSGELFVALQNC----TAFTGFPEFITE-PSGRIPENIGSLQKL 116 (244)
Q Consensus 43 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~L 116 (244)
+|+.||++++.++..--..+..+++|+.|+|+++. +++.--..+..+ ++|+.|+++.|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34455555544443222333444555555555542 443323333332 245555555442 333222335566777
Q ss_pred CeecCCCCC-CC
Q 042227 117 ETLDLSSNH-LS 127 (244)
Q Consensus 117 ~~L~ls~N~-l~ 127 (244)
++|+++++. ++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777764 44
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=3.7e-05 Score=66.21 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=62.7
Q ss_pred CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCC
Q 042227 35 PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQ 114 (244)
Q Consensus 35 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 114 (244)
...|.++..|+.+.+..+..+ .-...|.++++|+.+.+. +.++.....+|..+.+|+.+.+..+ ++..-...|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 445666666666666554433 334456666666666664 3344344455666666666665432 3322234566777
Q ss_pred CCCeecCCCCCCCCCCccccCCCCceE-EEcccCC
Q 042227 115 KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND 148 (244)
Q Consensus 115 ~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~ 148 (244)
+|+.+.+..+ ++..-..+|.++.+|+ +++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 7777777544 4433345677777777 7776654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=4.2e-06 Score=64.10 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCccCCcccCCC----CCCcEEEccCCC-CCCchhhhccCCCC
Q 042227 18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSGGIPASFCSL----PSLVWLKLSKND-LSGELFVALQNCTA 91 (244)
Q Consensus 18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~ 91 (244)
..|+.||++++.++..--..+.++++|+.|+|++|. +++.--..+..+ ++|++|+++++. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777665444455667777777777764 553222233333 357777777763 66544455666777
Q ss_pred CceecCCCCC
Q 042227 92 FTGFPEFITE 101 (244)
Q Consensus 92 L~~L~l~~n~ 101 (244)
|+.|+++.+.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.74 E-value=0.00021 Score=61.39 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=69.6
Q ss_pred CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227 15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG 94 (244)
Q Consensus 15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 94 (244)
.++..|+.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+..+ ++..-..+|..+.+|+.
T Consensus 250 ~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 33444444444444332 3334444555555554444332 1234556667777776544 44444566777777777
Q ss_pred ecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccC
Q 042227 95 FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYN 147 (244)
Q Consensus 95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N 147 (244)
+.+..+ ++..-..+|.++.+|+.+++..| ++..-..+|.++.+|+ +++..+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 766432 33233455777777777777665 5534455677777777 776544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.70 E-value=0.00022 Score=60.85 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=68.5
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 93 (244)
+.....|+.+.+..+ ++......|.++..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......+..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344455566555544 22233445556666666666554 33233445566666666666443 3333344566666666
Q ss_pred eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcc
Q 042227 94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLS 145 (244)
Q Consensus 94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls 145 (244)
.+.+..+.++..-...|.++.+|+.+++..+ ++..-..+|.++.+|+ +.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 6666555554333445666666666666543 4423334566666665 5543
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=1e-05 Score=63.16 Aligned_cols=109 Identities=10% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCCCCEEEccCC-cCCc----cCCcccCCCCCCcEEEccCCCCCC----chhhhccCCCCCceecCCCCCCCCC----CC
Q 042227 41 LEELMVKDLSNN-SLSG----GIPASFCSLPSLVWLKLSKNDLSG----ELFVALQNCTAFTGFPEFITEPSGR----IP 107 (244)
Q Consensus 41 l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p 107 (244)
-+.|+.|+|++| .|.. .+.+.+..-+.|+.|+|++|++.. .+...+..-+.|+.|+++.|.+... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 4431 123334444455555555555542 2333344445555555555554421 22
Q ss_pred cccCCCCCCCeecCCCCC---CCC----CCccccCCCCceE-EEcccCCC
Q 042227 108 ENIGSLQKLETLDLSSNH---LSG----PIPPSMSSMTRLS-LNLSYNDL 149 (244)
Q Consensus 108 ~~~~~l~~L~~L~ls~N~---l~~----~~p~~l~~l~~L~-L~ls~N~l 149 (244)
+.+..-+.|++|+|++|. +.. .+...+..-+.|+ ++++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344555667777776542 221 1233444456666 77766543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.65 E-value=0.00033 Score=59.70 Aligned_cols=123 Identities=7% Similarity=0.004 Sum_probs=92.0
Q ss_pred cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA 91 (244)
Q Consensus 12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 91 (244)
..+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-...|..+++|+.+.+.++.++..-..+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 45677889999999876 55455678889999999999765 55344567889999999999999888667788999999
Q ss_pred CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCC
Q 042227 92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT 138 (244)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 138 (244)
|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 999988643 44333457899999999988654 4422334455443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.53 E-value=0.00042 Score=59.51 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=93.0
Q ss_pred cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227 12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA 91 (244)
Q Consensus 12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 91 (244)
..+..+..++.+....+.+. ...|..+.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++.+
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 45677888888888776543 346788999999999765 55344567889999999999754 66566788999999
Q ss_pred CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227 92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141 (244)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~ 141 (244)
|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++ .+...|.++++|+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 999988765 55344567999999999999765 33 3456788888876
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.00074 Score=57.99 Aligned_cols=107 Identities=10% Similarity=0.125 Sum_probs=46.0
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227 14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93 (244)
Q Consensus 14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 93 (244)
|.++..|+.+.+.++..+ .....|.++..|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-..+|..+.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 344444555554443322 3333444455555555532 233122234444555555555432 3323334455555555
Q ss_pred eecCCCCCCCCCCCcccCCCCCCCeecCCCC
Q 042227 94 GFPEFITEPSGRIPENIGSLQKLETLDLSSN 124 (244)
Q Consensus 94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N 124 (244)
.+.+..+ ++..-...|.++.+|+.+++.++
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 5444322 22122234455555555555444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=2.8e-05 Score=60.63 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=79.3
Q ss_pred CCCCCccEEEccCC-ccccc----CCccccCCCCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCCCCc----
Q 042227 15 SEMKNFSFLDLSNN-ILSGE----IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDLSGE---- 81 (244)
Q Consensus 15 ~~l~~L~~L~l~~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~---- 81 (244)
.+-+.|+.|+|++| .|... +-+.+..-+.|+.|+|++|.|.. .+.+.+..-+.|+.|+|+.|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44578999999985 77642 33456666889999999999873 3344555667899999999999853
Q ss_pred hhhhccCCCCCceecCCCCC---CCC----CCCcccCCCCCCCeecCCCCCC
Q 042227 82 LFVALQNCTAFTGFPEFITE---PSG----RIPENIGSLQKLETLDLSSNHL 126 (244)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~---l~~----~~p~~~~~l~~L~~L~ls~N~l 126 (244)
+.+.+..-+.|+.|+++.+. +.. .+.+.+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 45567777789999997653 222 1334455667889999887764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.00043 Score=50.16 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=41.2
Q ss_pred cEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227 21 SFLDLSNNILS-GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79 (244)
Q Consensus 21 ~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 79 (244)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 34565443 46888888888888444566778888888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00054 Score=49.61 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=38.9
Q ss_pred CCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccccc
Q 042227 114 QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQT 161 (244)
Q Consensus 114 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~ 161 (244)
++|++|+|++|+|+...+..|..+++|+ |++++|++.+.+...+...+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~w 79 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHH
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHH
Confidence 4799999999999965566788899999 99999999988765443333
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.23 E-value=0.28 Score=27.93 Aligned_cols=18 Identities=11% Similarity=-0.130 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhcccHH
Q 042227 214 TRIHYWILDFLWSFENQK 231 (244)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~ 231 (244)
+++.+.+++.+|+|.|||
T Consensus 20 v~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333334444444443
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=81.43 E-value=0.54 Score=26.76 Aligned_cols=18 Identities=6% Similarity=-0.114 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHhcccHH
Q 042227 214 TRIHYWILDFLWSFENQK 231 (244)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~ 231 (244)
+++.+.+++.+|+|.|||
T Consensus 21 v~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333333334444433
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.98 E-value=2.2 Score=24.21 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHhcccHH
Q 042227 213 GTRIHYWILDFLWSFENQK 231 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~ 231 (244)
|+++.+.+.+.+..|.|||
T Consensus 20 Gvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheehh
Confidence 5333333333334444444
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=58.69 E-value=8.2 Score=20.39 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHhcccHHH
Q 042227 213 GTRIHYWILDFLWSFENQKL 232 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+|.|.++..-+.|+|-|+
T Consensus 15 gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 15 GLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCceeEEEcccc
Confidence 77777777666666665444
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=56.25 E-value=6.1 Score=21.55 Aligned_cols=7 Identities=14% Similarity=-0.059 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 042227 213 GTRIHYW 219 (244)
Q Consensus 213 ~~~~~~~ 219 (244)
|.++++.
T Consensus 19 G~v~gv~ 25 (38)
T 2k1k_A 19 GLLLGAA 25 (38)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=56.04 E-value=5.8 Score=21.75 Aligned_cols=11 Identities=0% Similarity=0.045 Sum_probs=5.0
Q ss_pred HHHHHHhcccH
Q 042227 220 ILDFLWSFENQ 230 (244)
Q Consensus 220 ~~~~~~~~~~~ 230 (244)
+++.+|.++||
T Consensus 29 iv~~~~~~~rR 39 (41)
T 2k9y_A 29 LAGVGFFIHRR 39 (41)
T ss_dssp HHHHHHSSSSS
T ss_pred HHHHheeEeee
Confidence 34444554444
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.45 E-value=20 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=18.4
Q ss_pred CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEcc
Q 042227 35 PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74 (244)
Q Consensus 35 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 74 (244)
...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344555555555555443 221223445555555555553
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.75 E-value=68 Score=21.17 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=37.3
Q ss_pred cCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 042227 5 LLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS 53 (244)
Q Consensus 5 ~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~ 53 (244)
.++..-...|.++.+|+.+.+-.+ ++..-...|.++.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 445445567899999999999876 443556789999999999997753
No 173
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=28.14 E-value=49 Score=17.95 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHhcccHHHH
Q 042227 213 GTRIHYWILDFLWSFENQKLL 233 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (244)
|+++|+...+....|.-||..
T Consensus 18 ~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 18 GVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777766666655543
No 174
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=27.16 E-value=19 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHhcccH
Q 042227 213 GTRIHYWILDFLWSFENQ 230 (244)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~ 230 (244)
|+++..++++..+..|||
T Consensus 26 gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 26 GVVIATVIVITLVMLKKK 43 (43)
Confidence 555555555555555543
No 175
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.29 E-value=90 Score=18.30 Aligned_cols=6 Identities=0% Similarity=0.501 Sum_probs=2.6
Q ss_pred hhhhhh
Q 042227 205 ELLFLF 210 (244)
Q Consensus 205 ~~~~~~ 210 (244)
..|+++
T Consensus 11 p~wiIi 16 (54)
T 2knc_A 11 PIWWVL 16 (54)
T ss_dssp CHHHHH
T ss_pred chHHHH
Confidence 345433
Done!