BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042231
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NSL|A Chain A, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|B Chain B, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|C Chain C, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|D Chain D, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|E Chain E, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|F Chain F, Crystal Structure Of Probable Acetyltransferase
Length = 184
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSIC-- 63
IT+R + D + Q R +W F + ++ IP WRR
Sbjct: 9 EHITIRLLEPKDAERLAELIIQNQ-QRLGKWLFFAENPSSADTYRETIIP-DWRRQYADL 66
Query: 64 -------IYDRSI-GFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115
+YD S+ G +S+ +R +A+IGY IA ++ G GI + A + + F++
Sbjct: 67 NGIEAGLLYDGSLCGXISLHNLDQVNR-KAEIGYWIAKEFEGKGIITAACRKLITYAFEE 125
Query: 116 F 116
Sbjct: 126 L 126
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 1 MEIDLSRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRR 60
M I R+ +R+F+ D + + D V + + FT E+ ++ +
Sbjct: 1 MFIKAERLLIRKFEFKDWEAVHEYTSDSDVMKYIPEGVFTE-EDTRNFVNKNMGENAKNF 59
Query: 61 SICIYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115
+ + +I I +IG+ KY+ G AS+A + L FK+
Sbjct: 60 PVILIGENILVGHIVFHKYFGEHTYEIGWVFNPKYFNKGYASEAAQATLKYGFKE 114
>pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Malonate
pdb|3BLF|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate
pdb|3BLI|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate And Acetyl-Coa
Length = 337
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 1 MEIDLSRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKD 51
+EI +R++ + + V M WA EQ+T + F G + + +IKD
Sbjct: 59 VEIASARVSKGELET--VQKIMEWAATEQLTERIEILGFVDGNKTVDWIKD 107
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 30 VTRSLRWNTFTSGEEALTYIKDVCIPHP---WRR 60
+T R G++A+ Y K V PHP WR+
Sbjct: 95 ITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK 128
>pdb|3RXY|A Chain A, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|B Chain B, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|C Chain C, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|D Chain D, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|E Chain E, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|F Chain F, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
Length = 278
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 66 DRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGI 100
D+ +G +++ G+G + GYA+A Y+ HG+
Sbjct: 192 DQPLGKIAVVHGAGTNG-----GYAVARAYFDHGV 221
>pdb|3LD2|A Chain A, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|B Chain B, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|C Chain C, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|D Chain D, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
Length = 197
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 64 IYDRSIG---FVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVL 120
I D+ +G + S++P G A+A K GI V++ LNEV D+ VL
Sbjct: 88 IKDKIVGVLDYSSLYPFPSGQHI-VTFGIAVAEKERRKGIGRALVQIFLNEVKSDYQKVL 146
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 17 DVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHP 57
DVD+ W G TR+ NTF GE+ T+ IPHP
Sbjct: 187 DVDN---WYGFGTGTRATFINTFQRGEQESTW---ETIPHP 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,759,539
Number of Sequences: 62578
Number of extensions: 143729
Number of successful extensions: 419
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 8
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)