Query 042231
Match_columns 124
No_of_seqs 109 out of 1071
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 04:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13302 Acetyltransf_3: Acety 99.9 3.2E-23 6.8E-28 122.4 10.6 116 7-124 1-123 (142)
2 PRK10151 ribosomal-protein-L7/ 99.9 1.3E-22 2.8E-27 124.3 12.6 121 2-124 5-132 (179)
3 PRK15130 spermidine N1-acetylt 99.9 8.8E-21 1.9E-25 116.9 11.9 120 2-123 1-121 (186)
4 PRK10809 ribosomal-protein-S5- 99.9 1.2E-20 2.5E-25 117.0 12.1 123 1-124 11-143 (194)
5 TIGR03585 PseH pseudaminic aci 99.8 3.2E-19 6.9E-24 106.9 11.2 112 9-123 2-114 (156)
6 PRK10140 putative acetyltransf 99.8 1.9E-18 4E-23 104.1 12.1 114 7-123 3-117 (162)
7 PF13420 Acetyltransf_4: Acety 99.8 1.2E-18 2.5E-23 104.4 10.4 112 10-123 1-115 (155)
8 COG1670 RimL Acetyltransferase 99.8 2.4E-17 5.2E-22 100.9 11.7 120 4-124 6-135 (187)
9 PLN02706 glucosamine 6-phospha 99.7 1.1E-16 2.3E-21 95.5 10.3 113 4-124 3-124 (150)
10 PF13523 Acetyltransf_8: Acety 99.7 3E-15 6.6E-20 89.4 11.4 111 10-123 1-117 (152)
11 PTZ00330 acetyltransferase; Pr 99.6 8.5E-15 1.8E-19 86.9 11.9 110 6-123 5-120 (147)
12 COG1247 Sortase and related ac 99.6 6.8E-15 1.5E-19 88.4 10.9 114 8-124 2-120 (169)
13 TIGR02382 wecD_rffC TDP-D-fuco 99.6 3.6E-15 7.7E-20 92.4 9.9 110 7-123 43-161 (191)
14 PRK03624 putative acetyltransf 99.6 1E-13 2.2E-18 81.2 11.6 104 7-123 2-106 (140)
15 PRK07757 acetyltransferase; Pr 99.6 1.1E-13 2.5E-18 82.6 10.1 101 8-123 2-103 (152)
16 PRK10146 aminoalkylphosphonic 99.5 2E-13 4.4E-18 80.7 10.6 108 6-122 2-113 (144)
17 PRK10975 TDP-fucosamine acetyl 99.5 1.5E-13 3.2E-18 85.3 10.2 109 8-123 47-164 (194)
18 TIGR03827 GNAT_ablB putative b 99.5 1.7E-13 3.7E-18 88.9 9.6 107 6-123 114-221 (266)
19 PRK09491 rimI ribosomal-protei 99.5 4.2E-13 9.1E-18 79.7 9.0 100 8-123 2-101 (146)
20 KOG4135 Predicted phosphogluco 99.5 1.3E-12 2.8E-17 75.9 10.3 118 3-122 9-145 (185)
21 TIGR02406 ectoine_EctA L-2,4-d 99.5 5.4E-13 1.2E-17 80.2 8.7 103 10-123 1-104 (157)
22 KOG3216 Diamine acetyltransfer 99.5 4.9E-12 1.1E-16 73.8 11.3 114 6-123 2-122 (163)
23 PRK10514 putative acetyltransf 99.4 1.6E-12 3.4E-17 77.0 9.0 96 8-112 2-98 (145)
24 PRK07922 N-acetylglutamate syn 99.4 2.1E-12 4.6E-17 78.6 9.6 103 6-123 4-108 (169)
25 COG3981 Predicted acetyltransf 99.4 1.2E-12 2.6E-17 77.9 7.8 114 7-122 3-134 (174)
26 PHA00673 acetyltransferase dom 99.4 1.8E-11 3.9E-16 72.7 11.7 108 12-123 11-123 (154)
27 PHA01807 hypothetical protein 99.4 2.7E-11 5.8E-16 72.4 10.8 104 13-122 9-118 (153)
28 PRK10562 putative acetyltransf 99.4 9.7E-12 2.1E-16 73.8 8.4 94 10-111 2-96 (145)
29 COG1246 ArgA N-acetylglutamate 99.3 3E-11 6.5E-16 71.1 9.0 102 9-124 2-104 (153)
30 PF13527 Acetyltransf_9: Acety 99.3 3.6E-11 7.8E-16 69.6 8.7 102 9-120 1-107 (127)
31 TIGR01575 rimI ribosomal-prote 99.3 1.6E-10 3.4E-15 66.9 10.7 76 39-123 16-92 (131)
32 PLN02825 amino-acid N-acetyltr 99.3 3E-11 6.5E-16 84.2 8.0 101 9-123 369-470 (515)
33 PRK09831 putative acyltransfer 99.2 8.9E-11 1.9E-15 69.8 8.5 95 9-114 2-103 (147)
34 cd04301 NAT_SF N-Acyltransfera 99.2 1.2E-10 2.5E-15 58.9 7.7 60 61-123 3-63 (65)
35 PF13673 Acetyltransf_10: Acet 99.2 8E-10 1.7E-14 63.0 10.5 86 17-113 1-94 (117)
36 PF00583 Acetyltransf_1: Acety 99.2 1.8E-10 3.9E-15 61.8 7.2 58 64-123 3-63 (83)
37 PRK12308 bifunctional arginino 99.2 5.8E-10 1.3E-14 79.9 11.6 102 7-123 463-565 (614)
38 TIGR01890 N-Ac-Glu-synth amino 99.2 2.4E-10 5.1E-15 78.8 8.5 100 9-122 284-384 (429)
39 TIGR03448 mycothiol_MshD mycot 99.2 2E-09 4.3E-14 70.7 12.1 111 7-122 149-263 (292)
40 KOG3396 Glucosamine-phosphate 99.1 1.6E-09 3.4E-14 62.3 9.4 108 7-122 6-122 (150)
41 PRK05279 N-acetylglutamate syn 99.1 5.1E-10 1.1E-14 77.4 8.9 101 8-122 295-396 (441)
42 TIGR01686 FkbH FkbH-like domai 99.1 4.5E-09 9.7E-14 70.0 11.1 105 6-123 185-295 (320)
43 PRK01346 hypothetical protein; 99.1 4.8E-09 1E-13 72.0 11.5 104 6-120 5-114 (411)
44 TIGR03103 trio_acet_GNAT GNAT- 99.1 3.6E-09 7.7E-14 74.9 10.7 105 7-123 82-193 (547)
45 PRK10314 putative acyltransfer 99.1 2E-09 4.3E-14 64.5 8.1 62 58-121 49-111 (153)
46 PF13508 Acetyltransf_7: Acety 99.0 4.6E-09 1E-13 56.0 7.8 53 58-114 4-57 (79)
47 TIGR03448 mycothiol_MshD mycot 99.0 5.4E-09 1.2E-13 68.6 8.1 96 12-113 5-100 (292)
48 COG3153 Predicted acetyltransf 98.9 7.9E-08 1.7E-12 58.2 11.3 107 6-122 2-112 (171)
49 KOG3139 N-acetyltransferase [G 98.9 5.3E-08 1.1E-12 57.7 9.0 65 57-123 55-122 (165)
50 PF14542 Acetyltransf_CG: GCN5 98.8 1.3E-07 2.9E-12 50.3 7.6 56 60-120 2-57 (78)
51 COG0456 RimI Acetyltransferase 98.7 3.7E-07 7.9E-12 55.6 9.4 101 6-115 10-123 (177)
52 cd02169 Citrate_lyase_ligase C 98.7 1.5E-07 3.2E-12 62.1 7.1 56 59-123 7-63 (297)
53 TIGR00124 cit_ly_ligase [citra 98.6 3.2E-07 6.9E-12 61.4 8.6 74 40-122 10-87 (332)
54 PRK13688 hypothetical protein; 98.5 1.5E-06 3.2E-11 52.3 8.1 54 57-110 45-106 (156)
55 PF12746 GNAT_acetyltran: GNAT 98.5 1.8E-06 3.8E-11 56.0 8.2 54 58-115 166-220 (265)
56 COG2153 ElaA Predicted acyltra 98.5 9.3E-07 2E-11 51.7 5.9 61 57-118 49-111 (155)
57 COG3393 Predicted acetyltransf 98.3 1.2E-05 2.5E-10 51.7 8.6 101 6-115 132-233 (268)
58 COG2388 Predicted acetyltransf 98.3 7.7E-06 1.7E-10 45.3 6.3 60 56-120 14-74 (99)
59 KOG3235 Subunit of the major N 98.1 3.2E-05 6.9E-10 46.1 7.6 95 8-114 2-102 (193)
60 KOG3397 Acetyltransferases [Ge 98.1 3.1E-05 6.8E-10 46.8 7.4 56 65-123 65-121 (225)
61 PF13480 Acetyltransf_6: Acety 98.1 0.00026 5.6E-09 41.3 10.8 111 7-122 19-131 (142)
62 PF06852 DUF1248: Protein of u 97.9 0.00038 8.3E-09 42.8 10.1 94 10-112 7-107 (181)
63 PF08445 FR47: FR47-like prote 97.9 8.7E-05 1.9E-09 40.2 5.8 31 85-115 22-53 (86)
64 KOG2488 Acetyltransferase (GNA 97.9 0.00011 2.5E-09 45.0 6.7 62 59-122 93-157 (202)
65 PRK10456 arginine succinyltran 97.9 0.00032 7E-09 47.1 9.4 97 8-107 2-143 (344)
66 PF04958 AstA: Arginine N-succ 97.9 0.00016 3.6E-09 48.5 7.9 98 8-108 2-146 (342)
67 TIGR01211 ELP3 histone acetylt 97.8 7.6E-05 1.6E-09 53.0 5.8 57 65-123 422-495 (522)
68 PF12568 DUF3749: Acetyltransf 97.7 0.00037 8.1E-09 40.2 7.0 80 13-112 10-90 (128)
69 KOG3138 Predicted N-acetyltran 97.7 0.00015 3.3E-09 44.7 5.3 99 6-115 14-121 (187)
70 TIGR03244 arg_catab_AstA argin 97.7 0.00071 1.5E-08 45.4 8.5 96 9-107 1-141 (336)
71 TIGR03245 arg_AOST_alph argini 97.6 0.00075 1.6E-08 45.2 8.4 96 9-107 1-142 (336)
72 TIGR03243 arg_catab_AOST argin 97.6 0.001 2.2E-08 44.6 8.5 96 9-107 1-141 (335)
73 COG5628 Predicted acetyltransf 97.5 0.00078 1.7E-08 38.4 6.0 59 56-114 36-96 (143)
74 PF08444 Gly_acyl_tr_C: Aralky 97.4 0.00036 7.7E-09 37.8 4.1 44 65-115 7-51 (89)
75 COG0454 WecD Histone acetyltra 97.2 0.00046 1E-08 38.1 3.2 27 89-115 87-113 (156)
76 PF01233 NMT: Myristoyl-CoA:pr 97.0 0.0058 1.3E-07 36.8 6.7 59 57-115 77-142 (162)
77 PF13718 GNAT_acetyltr_2: GNAT 97.0 0.00077 1.7E-08 42.0 3.1 71 40-113 13-120 (196)
78 PRK01305 arginyl-tRNA-protein 96.9 0.048 1E-06 35.3 12.5 76 39-122 127-204 (240)
79 PF13880 Acetyltransf_13: ESCO 96.9 0.00097 2.1E-08 34.5 2.4 25 88-112 10-34 (70)
80 PF11039 DUF2824: Protein of u 96.9 0.017 3.7E-07 33.6 7.4 60 56-121 37-96 (151)
81 PF04377 ATE_C: Arginine-tRNA- 96.9 0.035 7.5E-07 32.4 9.4 77 40-122 23-99 (128)
82 KOG3234 Acetyltransferase, (GN 96.6 0.0046 9.9E-08 37.1 4.1 95 9-113 3-99 (173)
83 PF05301 Mec-17: Touch recepto 96.5 0.033 7.1E-07 31.9 6.8 46 65-110 17-73 (120)
84 PF01853 MOZ_SAS: MOZ/SAS fami 96.3 0.051 1.1E-06 33.7 7.3 46 67-115 66-112 (188)
85 COG3053 CitC Citrate lyase syn 95.8 0.16 3.4E-06 33.9 8.3 44 65-115 45-88 (352)
86 PLN03238 probable histone acet 95.7 0.087 1.9E-06 34.8 6.7 47 66-115 140-187 (290)
87 cd04264 DUF619-NAGS DUF619 dom 95.4 0.17 3.7E-06 28.2 6.3 52 59-111 10-62 (99)
88 KOG2747 Histone acetyltransfer 95.2 0.046 1E-06 37.7 4.4 58 56-113 232-290 (396)
89 COG4552 Eis Predicted acetyltr 95.1 0.041 8.8E-07 37.4 3.9 60 56-115 38-102 (389)
90 TIGR03694 exosort_acyl putativ 95.1 0.3 6.5E-06 31.7 7.7 64 58-123 56-177 (241)
91 PF02799 NMT_C: Myristoyl-CoA: 94.7 0.078 1.7E-06 33.0 4.1 66 9-77 30-96 (190)
92 PF13444 Acetyltransf_5: Acety 94.7 0.23 5E-06 27.6 5.7 49 57-105 30-100 (101)
93 PLN03239 histone acetyltransfe 94.6 0.19 4.1E-06 34.2 6.0 47 66-115 198-245 (351)
94 PTZ00064 histone acetyltransfe 94.6 0.13 2.9E-06 36.6 5.5 47 66-115 369-416 (552)
95 PRK13834 putative autoinducer 94.2 0.87 1.9E-05 28.9 8.5 64 58-123 53-144 (207)
96 KOG2779 N-myristoyl transferas 94.0 0.51 1.1E-05 32.3 7.0 56 57-112 134-196 (421)
97 PLN00104 MYST -like histone ac 93.9 0.14 2.9E-06 36.1 4.4 47 66-115 291-338 (450)
98 KOG4144 Arylalkylamine N-acety 93.8 0.14 3.1E-06 30.8 3.7 101 6-115 10-133 (190)
99 COG1444 Predicted P-loop ATPas 93.8 0.062 1.3E-06 40.2 2.7 25 89-113 537-561 (758)
100 KOG2036 Predicted P-loop ATPas 93.7 0.08 1.7E-06 39.3 3.0 30 87-116 618-647 (1011)
101 PF00765 Autoind_synth: Autoin 92.2 1.8 3.9E-05 26.9 8.3 64 58-123 45-134 (182)
102 cd04265 DUF619-NAGS-U DUF619 d 91.9 1.3 2.8E-05 24.7 6.7 49 61-111 13-62 (99)
103 KOG2696 Histone acetyltransfer 91.9 0.35 7.5E-06 33.2 4.0 54 67-121 199-254 (403)
104 TIGR03019 pepcterm_femAB FemAB 91.6 3 6.6E-05 28.2 10.1 102 8-122 152-256 (330)
105 COG5027 SAS2 Histone acetyltra 91.0 0.18 3.9E-06 34.2 2.0 50 56-108 232-287 (395)
106 COG2401 ABC-type ATPase fused 90.8 0.27 5.8E-06 34.8 2.7 31 85-115 242-273 (593)
107 COG3138 AstA Arginine/ornithin 89.8 2.3 4.9E-05 28.5 6.2 64 8-74 2-76 (336)
108 COG3818 Predicted acetyltransf 89.5 0.57 1.2E-05 27.5 3.0 33 90-124 91-123 (167)
109 KOG4601 Uncharacterized conser 89.3 0.81 1.8E-05 29.5 3.8 27 84-110 109-135 (264)
110 PF04339 DUF482: Protein of un 88.3 6.8 0.00015 27.3 9.1 100 13-124 210-312 (370)
111 COG3375 Uncharacterized conser 88.3 5.2 0.00011 25.9 7.5 64 56-122 45-111 (266)
112 KOG2779 N-myristoyl transferas 85.7 1.3 2.8E-05 30.5 3.3 66 9-77 262-328 (421)
113 COG3882 FkbH Predicted enzyme 83.1 8.9 0.00019 27.9 6.5 107 6-123 412-524 (574)
114 COG1243 ELP3 Histone acetyltra 80.5 1.9 4.1E-05 30.8 2.6 55 65-122 415-487 (515)
115 PF09924 DUF2156: Uncharacteri 79.6 16 0.00034 24.4 7.3 62 56-122 179-242 (299)
116 KOG3698 Hyaluronoglucosaminida 79.5 5 0.00011 29.7 4.5 102 6-108 678-789 (891)
117 PF02474 NodA: Nodulation prot 75.1 2.9 6.3E-05 25.9 2.1 29 81-110 82-111 (196)
118 PF07315 DUF1462: Protein of u 72.9 9.6 0.00021 20.9 3.5 41 32-72 41-81 (93)
119 PRK00756 acyltransferase NodA; 72.0 4 8.6E-05 25.1 2.1 29 81-110 82-111 (196)
120 PRK09781 hypothetical protein; 71.6 12 0.00025 22.3 3.9 31 85-115 19-50 (181)
121 PF09390 DUF1999: Protein of u 70.8 20 0.00044 21.5 8.7 102 9-114 2-113 (161)
122 KOG2535 RNA polymerase II elon 68.8 4.9 0.00011 27.9 2.2 29 93-122 497-525 (554)
123 PF06559 DCD: 2'-deoxycytidine 65.0 4.4 9.5E-05 27.8 1.5 38 61-100 319-356 (364)
124 PRK15312 antimicrobial resista 62.0 48 0.001 22.6 6.8 95 10-105 157-252 (298)
125 PHA03005 sulfhydryl oxidase; P 58.9 7.1 0.00015 21.4 1.3 20 91-110 1-20 (96)
126 COG3916 LasI N-acyl-L-homoseri 54.0 57 0.0012 21.0 8.3 63 59-123 53-142 (209)
127 PF00633 HHH: Helix-hairpin-he 53.2 14 0.0003 15.6 1.6 14 98-111 17-30 (30)
128 PF04768 DUF619: Protein of un 52.6 54 0.0012 20.3 7.2 81 17-110 33-115 (170)
129 COG5092 NMT1 N-myristoyl trans 52.1 77 0.0017 22.0 7.3 48 65-112 142-194 (451)
130 PHA01733 hypothetical protein 51.7 13 0.00028 22.5 1.8 62 9-76 4-66 (153)
131 PRK02983 lysS lysyl-tRNA synth 51.1 1.4E+02 0.003 24.6 8.1 52 65-122 429-481 (1094)
132 PF00571 CBS: CBS domain CBS d 49.7 29 0.00062 16.3 4.7 34 39-75 15-49 (57)
133 PF07395 Mig-14: Mig-14; Inte 49.5 78 0.0017 21.2 6.4 102 10-114 129-235 (264)
134 PF02794 HlyC: RTX toxin acylt 48.9 55 0.0012 19.3 4.6 71 39-114 18-106 (133)
135 COG4001 Predicted metal-bindin 48.7 3.3 7.2E-05 22.5 -0.9 17 89-105 81-97 (102)
136 COG2898 Uncharacterized conser 47.7 1.2E+02 0.0025 22.7 7.4 53 65-123 401-455 (538)
137 cd04266 DUF619-NAGS-FABP DUF61 46.6 55 0.0012 18.6 6.7 50 61-110 13-67 (108)
138 smart00278 HhH1 Helix-hairpin- 44.5 22 0.00048 14.1 1.5 15 98-112 7-21 (26)
139 KOG3424 40S ribosomal protein 43.4 62 0.0013 18.8 3.5 47 30-76 25-77 (132)
140 COG0022 AcoB Pyruvate/2-oxoglu 43.2 38 0.00082 23.2 3.1 28 89-116 256-283 (324)
141 COG2231 Uncharacterized protei 42.3 19 0.00041 23.1 1.5 19 97-115 120-138 (215)
142 COG4837 Uncharacterized protei 40.4 67 0.0015 17.9 3.9 46 28-73 44-89 (106)
143 PHA00432 internal virion prote 38.2 35 0.00077 20.3 2.2 13 9-21 2-14 (137)
144 PHA02100 hypothetical protein 38.1 42 0.00092 18.5 2.3 23 97-120 51-74 (112)
145 PF02464 CinA: Competence-dama 37.2 74 0.0016 19.2 3.5 41 39-79 71-121 (154)
146 KOG4387 Ornithine decarboxylas 35.7 47 0.001 20.8 2.5 34 89-123 105-138 (191)
147 PHA00771 head assembly protein 35.4 98 0.0021 18.3 6.1 52 65-122 46-97 (151)
148 PF12342 DUF3640: Protein of u 35.1 15 0.00033 14.9 0.2 11 91-101 12-22 (26)
149 cd04641 CBS_pair_28 The CBS do 34.0 82 0.0018 17.2 3.3 22 55-76 94-116 (120)
150 PLN02331 phosphoribosylglycina 33.8 25 0.00054 22.4 1.2 29 84-112 103-132 (207)
151 PF03376 Adeno_E3B: Adenovirus 33.1 22 0.00047 18.2 0.6 12 92-103 53-64 (67)
152 COG5630 ARG2 Acetylglutamate s 32.1 1.9E+02 0.0042 20.7 7.0 48 65-112 381-430 (495)
153 cd04625 CBS_pair_12 The CBS do 30.4 94 0.002 16.6 3.6 33 41-76 76-108 (112)
154 PRK07758 hypothetical protein; 30.0 62 0.0013 18.0 2.1 21 97-119 72-92 (95)
155 PF07454 SpoIIP: Stage II spor 28.7 1.9E+02 0.004 19.5 6.3 38 84-121 186-223 (268)
156 COG5270 PUA domain (predicted 28.6 1.2E+02 0.0026 19.3 3.4 18 59-76 164-182 (202)
157 cd06246 M14_CPB2 Peptidase M14 26.7 2.1E+02 0.0046 19.5 8.8 72 38-112 4-80 (300)
158 cd04623 CBS_pair_10 The CBS do 25.9 1.2E+02 0.0025 16.1 4.1 33 41-76 77-109 (113)
159 PF05651 Diacid_rec: Putative 25.7 1.5E+02 0.0033 17.5 3.5 22 56-77 71-92 (135)
160 PF02100 ODC_AZ: Ornithine dec 25.6 37 0.0008 19.2 0.8 30 92-123 31-60 (108)
161 COG2239 MgtE Mg/Co/Ni transpor 25.1 1.7E+02 0.0037 21.4 4.1 40 38-77 147-189 (451)
162 COG3159 Uncharacterized protei 24.8 2.1E+02 0.0045 18.7 4.7 51 65-116 162-213 (218)
163 PRK03657 hypothetical protein; 24.5 1.8E+02 0.004 18.0 5.7 39 39-77 83-131 (170)
164 COG3543 Uncharacterized conser 24.4 80 0.0017 18.7 2.0 18 93-110 14-31 (135)
165 KOG3014 Protein involved in es 24.0 66 0.0014 21.3 1.8 23 89-111 189-211 (257)
166 PF08822 DUF1804: Protein of u 23.7 56 0.0012 20.2 1.4 30 89-118 116-145 (165)
167 COG2935 Putative arginyl-tRNA: 23.5 2.4E+02 0.0051 18.9 10.7 81 38-123 127-212 (253)
168 KOG0524 Pyruvate dehydrogenase 23.5 1.2E+02 0.0027 20.6 3.0 28 89-116 292-319 (359)
169 PF08669 GCV_T_C: Glycine clea 23.4 1.3E+02 0.0029 16.0 5.0 36 61-98 38-75 (95)
170 PF14520 HHH_5: Helix-hairpin- 23.3 87 0.0019 15.2 1.9 15 98-112 44-58 (60)
171 KOG1207 Diacetyl reductase/L-x 23.2 61 0.0013 20.6 1.5 15 96-110 15-29 (245)
172 PF12826 HHH_2: Helix-hairpin- 23.0 97 0.0021 15.5 2.0 18 98-115 41-58 (64)
173 PF07299 FBP: Fibronectin-bind 22.7 2.2E+02 0.0049 18.4 4.1 35 58-92 125-166 (208)
174 PHA02324 hypothetical protein 22.6 40 0.00087 15.6 0.5 8 92-99 39-46 (47)
175 PF12162 STAT1_TAZ2bind: STAT1 22.5 27 0.00059 13.8 -0.1 15 10-24 7-21 (23)
176 cd04584 CBS_pair_ACT_assoc Thi 22.5 1.4E+02 0.0031 16.1 3.8 21 56-76 97-117 (121)
177 cd04640 CBS_pair_27 The CBS do 22.4 1.5E+02 0.0033 16.3 3.9 29 48-76 92-122 (126)
178 cd04599 CBS_pair_GGDEF_assoc2 22.1 1.4E+02 0.0029 15.6 4.2 34 40-76 68-101 (105)
179 COG0623 FabI Enoyl-[acyl-carri 22.0 88 0.0019 20.8 2.1 32 90-122 150-181 (259)
180 PHA01635 hypothetical protein 21.9 2.2E+02 0.0048 18.4 3.7 40 58-98 105-146 (231)
181 cd04591 CBS_pair_EriC_assoc_eu 21.7 1.5E+02 0.0032 15.9 4.2 34 40-76 68-101 (105)
182 TIGR03252 uncharacterized HhH- 21.7 89 0.0019 19.6 2.0 22 98-120 121-142 (177)
183 cd04595 CBS_pair_DHH_polyA_Pol 21.4 1.5E+02 0.0032 15.7 3.7 33 41-76 74-106 (110)
184 cd04629 CBS_pair_16 The CBS do 21.4 1.5E+02 0.0032 15.8 3.4 33 41-76 78-110 (114)
185 PF13636 Nol1_Nop2_Fmu_2: pre- 21.1 1.6E+02 0.0034 16.4 2.8 37 40-76 51-91 (102)
186 PF14633 SH2_2: SH2 domain; PD 21.0 57 0.0012 21.2 1.1 106 7-115 103-219 (220)
187 COG3270 Uncharacterized conser 20.8 1.9E+02 0.0041 17.0 3.0 36 40-75 72-112 (127)
188 cd06234 M14_Nna1_like_1 A bact 20.4 2.8E+02 0.006 18.6 8.5 76 35-114 6-84 (263)
189 cd04582 CBS_pair_ABC_OpuCA_ass 20.4 1.5E+02 0.0033 15.5 3.8 34 40-76 10-44 (106)
190 KOG3383 Uncharacterized conser 20.3 61 0.0013 19.8 1.0 26 4-29 149-174 (187)
191 cd04605 CBS_pair_MET2_assoc Th 20.1 1.6E+02 0.0034 15.6 5.1 35 39-76 10-45 (110)
192 cd04594 CBS_pair_EriC_assoc_ar 20.1 1.6E+02 0.0034 15.6 4.3 33 41-76 68-100 (104)
193 PF07442 Ponericin: Ponericin; 20.1 81 0.0018 13.0 1.1 12 96-107 16-27 (29)
194 cd04615 CBS_pair_2 The CBS dom 20.1 1.6E+02 0.0035 15.7 3.7 21 56-76 88-109 (113)
No 1
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.90 E-value=3.2e-23 Score=122.40 Aligned_cols=116 Identities=29% Similarity=0.475 Sum_probs=93.7
Q ss_pred ceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCC-CCHHHHHHHHHHh-cC---CCCceEEEEE--cCeEeEEEEeeeCCC
Q 042231 7 RITLRQFKATDVDDFMLWAGDEQVTRSLRWNTF-TSGEEALTYIKDV-CI---PHPWRRSICI--YDRSIGFVSIFPGSG 79 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~~~i~~--~~~~iG~~~l~~~~~ 79 (124)
|+.|||++++|++.+++|.+++++.++.++.+. .+.++..+++.+. .. .+...|++.. ++++||++++...+.
T Consensus 1 Rl~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~ 80 (142)
T PF13302_consen 1 RLTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK 80 (142)
T ss_dssp SEEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred CEEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc
Confidence 689999999999999999999999999765543 5999999999842 11 1234466666 458999999966544
Q ss_pred CCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 80 DDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 80 ~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
.. ..+++|++|.|+|||+|+|++++..+++|+|+.+ ++++|.|
T Consensus 81 ~~-~~~eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~-~~~~i~a 123 (142)
T PF13302_consen 81 NN-NWAEIGYWIGPDYRGKGYGTEALKLLLDWAFEEL-GLHRIIA 123 (142)
T ss_dssp TT-TEEEEEEEEEGGGTTSSHHHHHHHHHHHHHHHTS-TSSEEEE
T ss_pred CC-CccccccchhHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence 33 3899999999999999999999999999999998 9998864
No 2
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.90 E-value=1.3e-22 Score=124.30 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=96.1
Q ss_pred eeecCceEEeeCCCCCHHHHHHHhCChhh--hhhcCCC-CCCCHHHHHHHHHHhc---CCC-CceEEEEEcCeEeEEEEe
Q 042231 2 EIDLSRITLRQFKATDVDDFMLWAGDEQV--TRSLRWN-TFTSGEEALTYIKDVC---IPH-PWRRSICIYDRSIGFVSI 74 (124)
Q Consensus 2 ~~~~~~i~lr~~~~~d~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~---~~~-~~~~~i~~~~~~iG~~~l 74 (124)
.++++++.|||++++|++.++++++++.. ..+..+. ++.+.++.++++.... ..+ ...++|..++++||++++
T Consensus 5 ~~~t~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l 84 (179)
T PRK10151 5 IPVSESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSF 84 (179)
T ss_pred EEeCCcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEE
Confidence 46789999999999999999999875543 3333333 3468899999988642 122 234666669999999999
Q ss_pred eeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 75 FPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 75 ~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
...++.++ .+++||+|+|+|||+|+|++++.++++++|+.. ++++|.+
T Consensus 85 ~~~~~~~~-~~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~-~~~ri~~ 132 (179)
T PRK10151 85 NRIEPLNK-TAYIGYWLDESHQGQGIISQALQALIHHYAQSG-ELRRFVI 132 (179)
T ss_pred EeeccCCC-ceEEEEEEChhhcCCcHHHHHHHHHHHHHHhhC-CccEEEE
Confidence 88766543 799999999999999999999999999999987 8998764
No 3
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.86 E-value=8.8e-21 Score=116.85 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=94.8
Q ss_pred eeecCceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcC-CCCceEEEEEcCeEeEEEEeeeCCCC
Q 042231 2 EIDLSRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCI-PHPWRRSICIYDRSIGFVSIFPGSGD 80 (124)
Q Consensus 2 ~~~~~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~iG~~~l~~~~~~ 80 (124)
+.++.++.|||++++|++.+++|.+++....++...+..+..+..+++..... .....|++..+|++||++++...+..
T Consensus 1 ~~~~~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~ 80 (186)
T PRK15130 1 MPSAHSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHV 80 (186)
T ss_pred CCCCCeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCC
Confidence 35678999999999999999999999887766544344445555556654432 33446666679999999999876544
Q ss_pred CCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 81 DRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 81 ~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+. .++++++++|+|||+|+|++++..+++++|+++ ++++|+
T Consensus 81 ~~-~~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-~~~rv~ 121 (186)
T PRK15130 81 HR-RAEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYKLY 121 (186)
T ss_pred CC-eEEEEEEECHHHcCCCHHHHHHHHHHHHHhhcC-CceEEE
Confidence 33 689999999999999999999999999999988 998875
No 4
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.86 E-value=1.2e-20 Score=117.03 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=88.8
Q ss_pred CeeecCceEEeeCCCCCHHHHHHHhCChh-h-hhhcCCCC--CCCHHHH---HHHHHHhcCCC-CceEEEEE--cCeEeE
Q 042231 1 MEIDLSRITLRQFKATDVDDFMLWAGDEQ-V-TRSLRWNT--FTSGEEA---LTYIKDVCIPH-PWRRSICI--YDRSIG 70 (124)
Q Consensus 1 m~~~~~~i~lr~~~~~d~~~l~~~~~~~~-~-~~~~~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~i~~--~~~~iG 70 (124)
|+++++++.||+++++|++.++++++++. . ..+.+..+ ..+.++. ..++......+ ...|++.. ++++||
T Consensus 11 ~~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG 90 (194)
T PRK10809 11 VRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIG 90 (194)
T ss_pred eeeccCcEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEE
Confidence 35789999999999999999999998743 2 22222111 1112222 23333332223 33566654 679999
Q ss_pred EEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 71 FVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 71 ~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
.+++...+......+++||+|+|+|||+|+|+++++.+++++|+.+ ++++|.+
T Consensus 91 ~i~l~~~~~~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l-~l~~i~~ 143 (194)
T PRK10809 91 VANFSNVVRGSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ-HMHRIMA 143 (194)
T ss_pred EEEEEeecCCCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-CceEEEE
Confidence 9999876653334789999999999999999999999999999998 9998864
No 5
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.82 E-value=3.2e-19 Score=106.90 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=93.0
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCc-eEEEEEcCeEeEEEEeeeCCCCCCceeEE
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPW-RRSICIYDRSIGFVSIFPGSGDDRCRADI 87 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~iG~~~l~~~~~~~~~~~~i 87 (124)
.|||++++|++.+.+|.+++++..+....+..+.++.+.|+......... .+++..+|++||++++...+... ..+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~-~~~~~ 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVH-KSAFW 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhh-CeEEE
Confidence 58999999999999999999998886555557888889998887654433 45555599999999998765432 36889
Q ss_pred EEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 88 GYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 88 ~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
|+++.|.+| +|+|++++..+++++++.+ +++++.
T Consensus 81 g~~~~~~~~-~G~g~~~~~~~~~~a~~~~-~~~~i~ 114 (156)
T TIGR03585 81 GIYANPFCK-PGVGSVLEEAALEYAFEHL-GLHKLS 114 (156)
T ss_pred EEEeChhhh-cCchHHHHHHHHHHHHhhC-CeeEEE
Confidence 988899999 9999999999999999887 888875
No 6
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.81 E-value=1.9e-18 Score=104.08 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=83.1
Q ss_pred ceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCC-CCcee
Q 042231 7 RITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGD-DRCRA 85 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~-~~~~~ 85 (124)
++.|||++++|++.+.++.++++........+..+.+.....+.. ......+++..++++||++++...... ....+
T Consensus 3 ~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~ 80 (162)
T PRK10140 3 EIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLAD--RPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVA 80 (162)
T ss_pred ccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhc--CCCcEEEEEEECCEEEEEEEEecccccccceEE
Confidence 589999999999999999998765543332333455444433332 122234555559999999999764322 23367
Q ss_pred EEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 86 DIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 86 ~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+++++|+|+|||+|+|+++++.+++++++.. +++++.
T Consensus 81 ~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~-~~~~i~ 117 (162)
T PRK10140 81 DFGICVDSRWKNRGVASALMREMIEMCDNWL-RVDRIE 117 (162)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHhhC-CccEEE
Confidence 8999999999999999999999999999866 877664
No 7
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.80 E-value=1.2e-18 Score=104.40 Aligned_cols=112 Identities=15% Similarity=0.243 Sum_probs=88.5
Q ss_pred EeeCCCCCHHHHHHHhCChhhhhhcCCC-CCCCHHHHHHHHHHhc-CCCCceEEEEE-cCeEeEEEEeeeCCCCCCceeE
Q 042231 10 LRQFKATDVDDFMLWAGDEQVTRSLRWN-TFTSGEEALTYIKDVC-IPHPWRRSICI-YDRSIGFVSIFPGSGDDRCRAD 86 (124)
Q Consensus 10 lr~~~~~d~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~ 86 (124)
|||++.+|++.+.+|++++.....+... ...+.+..+.++.... .+....+++.. +|++||++.+...++. ...++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~-~~~~~ 79 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPY-NHTAE 79 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSG-TTEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeecc-CCEEE
Confidence 7999999999999999876555554433 2367888888888764 33456677777 9999999999988774 44999
Q ss_pred EEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 87 IGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 87 i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+++.+.|+|||+|+|+.++..+++++|+++ ++++|.
T Consensus 80 ~~~~v~~~~~~~gig~~l~~~l~~~af~~~-~~~~i~ 115 (155)
T PF13420_consen 80 LSIYVSPDYRGKGIGRKLLDELIEYAFKEL-GIHKIY 115 (155)
T ss_dssp EEEEEEGGGTTSSHHHHHHHHHHHHH-HHT-T-CEEE
T ss_pred EeeEEChhHCCCcHHHHHHHHHHHHhhhcc-CeEEEE
Confidence 999999999999999999999999998888 999875
No 8
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.4e-17 Score=100.91 Aligned_cols=120 Identities=25% Similarity=0.358 Sum_probs=93.6
Q ss_pred ecCceEEeeCCCCCHHHHHHHhCChhhhhhcCCCC----CCCHHHHHHHHHHhcC-CCCceEEEEE--c--CeEeEEEEe
Q 042231 4 DLSRITLRQFKATDVDDFMLWAGDEQVTRSLRWNT----FTSGEEALTYIKDVCI-PHPWRRSICI--Y--DRSIGFVSI 74 (124)
Q Consensus 4 ~~~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~i~~--~--~~~iG~~~l 74 (124)
.+.++.+|++..+|+..+..+.+++....+....+ ..+.++...++..... .+...|.+.. + +++||.+++
T Consensus 6 ~~~r~~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~ 85 (187)
T COG1670 6 LTLRLLLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGL 85 (187)
T ss_pred ccceeEeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEE
Confidence 45688899999999999998888888887766543 4455555666665443 3344555554 3 489999999
Q ss_pred eeCCC-CCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 75 FPGSG-DDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 75 ~~~~~-~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
...+. .....+++||++.|+|||+|+|++++.++++|+|+.+ ++++|.|
T Consensus 86 ~~~~~~~~~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~-~l~ri~~ 135 (187)
T COG1670 86 SDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEEL-GLHRIEA 135 (187)
T ss_pred EEeccccccceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhc-CceEEEE
Confidence 98763 3334899999999999999999999999999999998 9999864
No 9
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.73 E-value=1.1e-16 Score=95.49 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=79.1
Q ss_pred ecCceEEeeCCCCCHH-HHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCC-CCc-eEEEEE--cCeEeEEEEeeeCC
Q 042231 4 DLSRITLRQFKATDVD-DFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIP-HPW-RRSICI--YDRSIGFVSIFPGS 78 (124)
Q Consensus 4 ~~~~i~lr~~~~~d~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~--~~~~iG~~~l~~~~ 78 (124)
++.++.||+++.+|.+ .+.+++.+. ...++.+.+...+++...... ... .+++.. ++++||++.+....
T Consensus 3 ~~~~~~ir~~~~~D~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (150)
T PLN02706 3 TGEKFKVRRLEISDKSKGFLELLQQL------TVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVER 76 (150)
T ss_pred CCCceEEeEhhhcccchHHHHHHHhc------cCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEe
Confidence 4678999999999988 477776542 122357888888888765542 233 333334 58999999885321
Q ss_pred CCCCceeEEE----EEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 79 GDDRCRADIG----YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 79 ~~~~~~~~i~----~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
......++.+ ++|+|+|||||+|+++++.+++++++. ++++|.+
T Consensus 77 ~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~--g~~~i~l 124 (150)
T PLN02706 77 KFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSA--GCYKVIL 124 (150)
T ss_pred ecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEE
Confidence 1111133444 688999999999999999999999864 9988753
No 10
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.67 E-value=3e-15 Score=89.43 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=78.7
Q ss_pred EeeCC-CCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhc-CCCCceEEEEEcCeEeEEEEeeeCCCC---CCce
Q 042231 10 LRQFK-ATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVC-IPHPWRRSICIYDRSIGFVSIFPGSGD---DRCR 84 (124)
Q Consensus 10 lr~~~-~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~iG~~~l~~~~~~---~~~~ 84 (124)
||+++ .+|++.|.+|++++++..++.... +.+..+.+..... .+....+++..+|+++|++.+...... ....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~ 78 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDP--SQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGD 78 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCC--THHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCC--CHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCE
Confidence 79999 999999999999999988766433 4455555555443 233345566669999999999763332 2225
Q ss_pred eEEEEEe-CccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 85 ADIGYAI-AVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 85 ~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
..++..+ +++++|+|+|+.++.+++++++++. ++++|.
T Consensus 79 ~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~-~~~~i~ 117 (152)
T PF13523_consen 79 RGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDP-GVDRIV 117 (152)
T ss_dssp EEEEEEESTGGGTTSSHHHHHHHHHHHHHHTST-T--EEE
T ss_pred EEEeeeeechhhcCCCHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5577555 8999999999999999999999985 888765
No 11
>PTZ00330 acetyltransferase; Provisional
Probab=99.65 E-value=8.5e-15 Score=86.87 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEE-E-EcCeEeEEEEeeeCCCC---
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSI-C-IYDRSIGFVSIFPGSGD--- 80 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~-~~~~~iG~~~l~~~~~~--- 80 (124)
.++.||+++++|.+.+.+++.+.. ..+..+.++...+.......+...+++ . .++++||++.+......
T Consensus 5 ~~~~ir~~~~~D~~~i~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 78 (147)
T PTZ00330 5 GSLELRDLEEGDLGSVLELLSHLT------SAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRG 78 (147)
T ss_pred ceEEEEEcccccHHHHHHHHHHhc------CCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccC
Confidence 468999999999999999875421 223346666666665433323333333 3 38899999998643221
Q ss_pred CCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 81 DRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 81 ~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
....+++. ++|+|+|||+|+|+++++.+++++++. ++.+++
T Consensus 79 ~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~--~~~~l~ 120 (147)
T PTZ00330 79 GKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSS--GCYKVI 120 (147)
T ss_pred CCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 11134444 788999999999999999999999875 776553
No 12
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=6.8e-15 Score=88.36 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=92.2
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCC-CCCCHHHHHHHHHHhcCCCCceEEEE-E-cCeEeEEEEeeeCCCC--CC
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWN-TFTSGEEALTYIKDVCIPHPWRRSIC-I-YDRSIGFVSIFPGSGD--DR 82 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~-~-~~~~iG~~~l~~~~~~--~~ 82 (124)
..||+.+.+|++.+.+++++........++ .+.+.+...+|+......+ +.+++. . +|+++|++++....+. .+
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g-~p~~V~~~~~g~v~G~a~~~~fr~r~ay~ 80 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDG-YPVVVAEEEDGKVLGYASAGPFRERPAYR 80 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCC-ceEEEEEcCCCeEEEEEEeeeccCccccc
Confidence 578999999999999999987776654444 5789999999999876644 333333 3 5999999999776553 45
Q ss_pred ceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 83 CRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 83 ~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
.+.|.+++|+|+.||||+|++++++|++.+... |++.+.|
T Consensus 81 ~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~--g~~~lva 120 (169)
T COG1247 81 HTVELSIYLDPAARGKGLGKKLLQALITEARAL--GVRELVA 120 (169)
T ss_pred eEEEEEEEECcccccccHHHHHHHHHHHHHHhC--CeEEEEE
Confidence 589999999999999999999999999999765 8877653
No 13
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.64 E-value=3.6e-15 Score=92.36 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=76.0
Q ss_pred ceEEeeCCCCCHHHHHHHhCChh-hhhhcCCCCCCCHHH----HHHHHHHhcCCC-Cce-EEEEE-cCeEeEEEEeeeCC
Q 042231 7 RITLRQFKATDVDDFMLWAGDEQ-VTRSLRWNTFTSGEE----ALTYIKDVCIPH-PWR-RSICI-YDRSIGFVSIFPGS 78 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~-~~i~~-~~~~iG~~~l~~~~ 78 (124)
.+.|||++++|++.+.++++++. ...+.. +..+.+. ...++....... ... +++.. ++++||++.+...+
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~ 120 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSRFRA--PWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN 120 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccccCC--CCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC
Confidence 46899999999999999998763 222321 1223333 233444433222 222 22333 88999999998764
Q ss_pred CCCCceeEEEEE-eCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 79 GDDRCRADIGYA-IAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 79 ~~~~~~~~i~~~-i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.. .+++++. |+|+|||||+|+++++++++++++ + |+++|.
T Consensus 121 ~~---~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~-~-g~~~I~ 161 (191)
T TIGR02382 121 DT---DARIGLLAVFPGAQSRGIGAELMQTALNWCYA-R-GLTRLR 161 (191)
T ss_pred CC---ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-c-CCCEEE
Confidence 32 5788865 699999999999999999999986 5 888775
No 14
>PRK03624 putative acetyltransferase; Provisional
Probab=99.58 E-value=1e-13 Score=81.23 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=68.6
Q ss_pred ceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcC-CCCceEEEEEcCeEeEEEEeeeCCCCCCcee
Q 042231 7 RITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCI-PHPWRRSICIYDRSIGFVSIFPGSGDDRCRA 85 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~ 85 (124)
.+.||+++++|++.+.+++.+.... .+..... ..+..... .....+++..++++||++.+.... .. ..
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~--~~-~~ 70 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLT------RPWNDPE--MDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDG--HR-GW 70 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCC------cchhhHH--HHHHHHhcCCCceEEEEEcCCcEEEEEEeeccC--CC-ce
Confidence 5789999999999999988765211 1111111 11222222 223344444589999999876421 11 23
Q ss_pred EEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 86 DIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 86 ~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
...+.|+|+|||+|+|++++..+++++++. +++++.
T Consensus 71 i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~--~~~~~~ 106 (140)
T PRK03624 71 AYYLAVHPDFRGRGIGRALVARLEKKLIAR--GCPKIN 106 (140)
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 345678999999999999999999998764 777654
No 15
>PRK07757 acetyltransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=82.57 Aligned_cols=101 Identities=20% Similarity=0.119 Sum_probs=71.4
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEE
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADI 87 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i 87 (124)
+.||+++++|++.+.++.++...... ....+.++....+ ...+++..++++||++.+...... .+++
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~-------~~~~i~~~~~~lvG~~~l~~~~~~---~~~i 68 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGL---MLPRSLDELYENI-------RDFYVAEEEGEIVGCCALHILWED---LAEI 68 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCC---ccCCCHHHHHhcc-------CcEEEEEECCEEEEEEEEEeccCC---ceEE
Confidence 57999999999999999864322111 1123433333222 124455559999999999764332 4667
Q ss_pred -EEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 88 -GYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 88 -~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+++|+|+|||+|+|++++..+++++.+. +++++.
T Consensus 69 ~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~--g~~~i~ 103 (152)
T PRK07757 69 RSLAVSEDYRGQGIGRMLVEACLEEAREL--GVKRVF 103 (152)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCCeEE
Confidence 6888999999999999999999999764 777653
No 16
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.54 E-value=2e-13 Score=80.68 Aligned_cols=108 Identities=10% Similarity=-0.006 Sum_probs=71.4
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCC-ceEEEEEcCeEeEEEEeeeCCCCC--C
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHP-WRRSICIYDRSIGFVSIFPGSGDD--R 82 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~iG~~~l~~~~~~~--~ 82 (124)
..+.||+++.+|++.+.+++.+-... ..+.+.....+........ ..+++..++++||++.+....... .
T Consensus 2 ~~~~ir~a~~~D~~~l~~l~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~ 74 (144)
T PRK10146 2 PACELRPATQYDTDAVYALICELKQA-------EFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVN 74 (144)
T ss_pred CccEEeeCcHhhHHHHHHHHHHHhcc-------cCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccc
Confidence 35789999999999999987532110 1122332333333333233 334445599999999997532211 1
Q ss_pred ceeEE-EEEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 83 CRADI-GYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 83 ~~~~i-~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
..+++ .++|+|+|||+|+|+++++.+++++.+. +++.+
T Consensus 75 ~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~--~~~~i 113 (144)
T PRK10146 75 WIGEIQELVVMPQARGLNVGSKLLAWAEEEARQA--GAEMT 113 (144)
T ss_pred hhheeheeEECHHHcCCCHHHHHHHHHHHHHHHc--CCcEE
Confidence 13455 4788999999999999999999999775 77654
No 17
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=85.35 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=74.1
Q ss_pred eEEeeCCCCCHHHHHHHhCChhh-hhhcCCCCCCCHHHHH----HHHHHhcCCC-C-ceEEEEE-cCeEeEEEEeeeCCC
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQV-TRSLRWNTFTSGEEAL----TYIKDVCIPH-P-WRRSICI-YDRSIGFVSIFPGSG 79 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~-~-~~~~i~~-~~~~iG~~~l~~~~~ 79 (124)
..||+++++|++.+.++.++... ..+. .+..+.++.. .|+....... . ..+++.. ++++||++.+.....
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~ 124 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFR--APWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELND 124 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhcccc--CccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCC
Confidence 56899999999999999887532 2221 2223444333 3333322211 2 2333333 789999999987533
Q ss_pred CCCceeEEEEE-eCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 80 DDRCRADIGYA-IAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 80 ~~~~~~~i~~~-i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
. .+++++. |+|+|||+|+|++++..+++++++. +++++.
T Consensus 125 ~---~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~--g~~~i~ 164 (194)
T PRK10975 125 T---DARIGLLAVFPGAQGRGIGARLMQAALNWCQAR--GLTRLR 164 (194)
T ss_pred C---ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHc--CCCEEE
Confidence 2 5778854 7999999999999999999999874 888764
No 18
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.52 E-value=1.7e-13 Score=88.88 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=74.3
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCcee
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRA 85 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~ 85 (124)
..+.||+++++|++.+.+++.+.. ...+. +..+. .++.....+....+++..++++||++++... ... ..+
T Consensus 114 ~~~~IR~a~~~D~~~l~~L~~~v~--~~~~~-~~~~~----~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~-~~~-~~~ 184 (266)
T TIGR03827 114 EGFTLRIATEDDADAMAALYRKVF--PTYPF-PIHDP----AYLLETMKSNVVYFGVEDGGKIIALASAEMD-PEN-GNA 184 (266)
T ss_pred CceEEEECCHHHHHHHHHHHHHHh--ccCCC-CccCH----HHHHHHhcCCcEEEEEEECCEEEEEEEEecC-CCC-CcE
Confidence 568999999999999999886532 11111 11222 3333333333344555569999999987432 222 257
Q ss_pred EEE-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 86 DIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 86 ~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+++ ++|+|+|||+|+|+++++.+++++++. +++++.
T Consensus 185 eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~--g~~~l~ 221 (266)
T TIGR03827 185 EMTDFATLPEYRGKGLAKILLAAMEKEMKEK--GIRTAY 221 (266)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCcEEE
Confidence 786 788999999999999999999999865 887664
No 19
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.49 E-value=4.2e-13 Score=79.65 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=68.2
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEE
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADI 87 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i 87 (124)
..||+++.+|++.+.++.+++.... .+.++.. .. .......+.+..++++||++.+...... ....
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~~~~~-------~~~~~~~---~~-~~~~~~~~~~~~~~~~vG~~~~~~~~~~---~~~~ 67 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRAHAFP-------WSEKTFA---SN-QGERYLNLKLTVNGQMAAFAITQVVLDE---ATLF 67 (146)
T ss_pred cchhcCChhhhHHHHHHHHhcCCCC-------CCHHHHH---HH-HhcCceEEEEEECCeEEEEEEEEeecCc---eEEE
Confidence 5789999999999999876544322 2222221 12 1112223344558999999998764321 3345
Q ss_pred EEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 88 GYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 88 ~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.+.|+|+|||+|+|+++++.+++.+.+. +++++.
T Consensus 68 ~i~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~~~~ 101 (146)
T PRK09491 68 NIAVDPDYQRQGLGRALLEHLIDELEKR--GVATLW 101 (146)
T ss_pred EEEECHHHccCCHHHHHHHHHHHHHHHC--CCcEEE
Confidence 5778999999999999999999998654 777654
No 20
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.3e-12 Score=75.89 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=91.2
Q ss_pred eecCceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCc-eEEEEE-----c-----CeEeEE
Q 042231 3 IDLSRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPW-RRSICI-----Y-----DRSIGF 71 (124)
Q Consensus 3 ~~~~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~-----~-----~~~iG~ 71 (124)
+.+.++.|.|.++.++..+++|+.+++..+..... +.+.++-.++-.++..+.+- .|++.+ . .-+||-
T Consensus 9 i~~~kvILVPYe~~HV~kYHeWMknEelr~LT~SE-~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGD 87 (185)
T KOG4135|consen 9 ILGKKVILVPYEPCHVPKYHEWMKNEELRRLTASE-PLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGD 87 (185)
T ss_pred EecceEEEeeccccchhHHHhHhhhHHHHHhhcCC-CcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccc
Confidence 44678999999999999999999999999886644 57888877777777764443 455553 1 237899
Q ss_pred EEeeeCCCCC-------CceeEEEEEe-CccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 72 VSIFPGSGDD-------RCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 72 ~~l~~~~~~~-------~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
+.+..-.... ..++|+...| .|.-||||+|++++.+++.|+...+ ++.+.
T Consensus 88 vNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l-~l~Ky 145 (185)
T KOG4135|consen 88 VNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVL-KLDKY 145 (185)
T ss_pred eeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHh-hhheE
Confidence 9886532221 2379999999 6999999999999999999998877 76654
No 21
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.47 E-value=5.4e-13 Score=80.25 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=65.0
Q ss_pred EeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeeeCCCCCCceeEEE
Q 042231 10 LRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFPGSGDDRCRADIG 88 (124)
Q Consensus 10 lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~i~ 88 (124)
||+++.+|++.+.++..+..... .++...+...........+++.. ++++||++.+..............
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~ 71 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLD---------LNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQ 71 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCC---------cccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEE
Confidence 68999999999999886642111 11111111111111223344443 679999987754333222123345
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
++|+|+|||+|+|+++++.++++++.. ++.+|.
T Consensus 72 l~V~p~~rg~GiG~~L~~~l~~~a~~~--~~~~i~ 104 (157)
T TIGR02406 72 VAVDPRARGKGLARRLLEALLERVACE--RVRHLE 104 (157)
T ss_pred EEEChHhccCcHHHHHHHHHHHHHHhC--CCCEEE
Confidence 778999999999999999999999875 666554
No 22
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.45 E-value=4.9e-12 Score=73.84 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=75.3
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE----cCeEeEEEEeeeCCCC-
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI----YDRSIGFVSIFPGSGD- 80 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~iG~~~l~~~~~~- 80 (124)
.+++||+++++|.+.+.++..+-..-+.+......+.+....-. +..+....+.+.. ++.++|++.+...-..
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~--F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW 79 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDG--FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTW 79 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhh--ccCCCccEEEEEEEecCCCceeEEeeeecccccc
Confidence 47899999999999999977653333333333333444433321 3333333443332 7899999998764322
Q ss_pred -C-CceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 81 -D-RCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 81 -~-~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
. +....-.++|.|+|||||+|+++++.+.+.+.+. |+.++.
T Consensus 80 ~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~--G~~rv~ 122 (163)
T KOG3216|consen 80 LGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKL--GTPRVE 122 (163)
T ss_pred cccceEEEEeeEecchhcccChHHHHHHHHHHHHHHc--CCCcEE
Confidence 2 2233445788999999999999999999999765 887763
No 23
>PRK10514 putative acetyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=76.99 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=65.2
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEE-EcCeEeEEEEeeeCCCCCCceeE
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSIC-IYDRSIGFVSIFPGSGDDRCRAD 86 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~~~~~~~~~~ 86 (124)
+.||+++++|++.+.+++.+...... .+..+.+.+....++....... ..+++. .++++||++.+... ..
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iG~~~~~~~------~~- 72 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATH-DFLSAEDRAEIEELVRSFLPEA-PLWVAVDERDQPVGFMLLSGG------HM- 72 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhC-cccCchhHHHHHHHHHHHhccC-ceEEEEecCCcEEEEEEEecC------cE-
Confidence 57899999999999998766432221 1112345556666666554332 244444 48999999988531 11
Q ss_pred EEEEeCccccccChHHHHHHHHHHHH
Q 042231 87 IGYAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 87 i~~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
-+++|+|+|||||+|+++++.+.+.+
T Consensus 73 ~~~~v~p~~rgkGig~~Ll~~~~~~~ 98 (145)
T PRK10514 73 EALFVDPDVRGCGVGRMLVEHALSLH 98 (145)
T ss_pred eEEEECHHhccCCHHHHHHHHHHHhc
Confidence 26888999999999998888887754
No 24
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.44 E-value=2.1e-12 Score=78.56 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=71.5
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEE-EcCeEeEEEEeeeCCCCCCce
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSIC-IYDRSIGFVSIFPGSGDDRCR 84 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~~~~~~~~ 84 (124)
..+.+|+++++|.+.+.++...-.. . . ....+....++.. ....+++. .++++||++.+..... ..
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~-~----~-~~~~~~~~~~~~~----~~~~~va~~~~~~iiG~~~~~~~~~---~~ 70 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQ-G----R-ILLEKNLVTLYEA----VQEFWVAEHLDGEVVGCGALHVMWE---DL 70 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhh-c----C-ccccchHHHHHhh----cCcEEEEEecCCcEEEEEEEeecCC---Cc
Confidence 4689999999999999998643111 0 0 0111111222222 22345555 6899999998866432 25
Q ss_pred eEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 85 ADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 85 ~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
++++ +.|+|+|||+|+|+++++.+++++++. +++++.
T Consensus 71 ~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~--g~~~l~ 108 (169)
T PRK07922 71 AEIRTVAVDPAARGRGVGHAIVERLLDVAREL--GLSRVF 108 (169)
T ss_pred eEEEEEEECHHHhCCCHHHHHHHHHHHHHHHc--CCCEEE
Confidence 7785 788999999999999999999999875 888764
No 25
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=77.89 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=78.0
Q ss_pred ceEEeeCCCCCHHHHHHHhCChhhhh----hcCCCCCCCHHHHHHHHHHhcC-------CC----CceEEEEE-cCeEeE
Q 042231 7 RITLRQFKATDVDDFMLWAGDEQVTR----SLRWNTFTSGEEALTYIKDVCI-------PH----PWRRSICI-YDRSIG 70 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~i~~-~~~~iG 70 (124)
.+.|+.++..|.+++.+...+..... ...+....+.+.+..|+..... +. ...++.+. |+++||
T Consensus 3 ~~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG 82 (174)
T COG3981 3 EMKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVG 82 (174)
T ss_pred cccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEE
Confidence 46788888889988887655433221 1111122333667777776332 11 12333333 899999
Q ss_pred EEEeeeCCCC--CCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 71 FVSIFPGSGD--DRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 71 ~~~l~~~~~~--~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
++.+...-++ ....+.|||.|.|+.||||||+++++..++.|.+. |+++|
T Consensus 83 ~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~l--gi~~V 134 (174)
T COG3981 83 FINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKAREL--GIKKV 134 (174)
T ss_pred EEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHc--CCCeE
Confidence 9999775443 22278999999999999999999999999999765 88876
No 26
>PHA00673 acetyltransferase domain containing protein
Probab=99.41 E-value=1.8e-11 Score=72.73 Aligned_cols=108 Identities=6% Similarity=-0.041 Sum_probs=70.0
Q ss_pred eCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCce-EEEEEcCeEeEEEEeeeCCCC---CCceeEE
Q 042231 12 QFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWR-RSICIYDRSIGFVSIFPGSGD---DRCRADI 87 (124)
Q Consensus 12 ~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~iG~~~l~~~~~~---~~~~~~i 87 (124)
-.+.+|++.|.+++.+...... ..+.......... +.....++... ++..++|++||++.+...... ....+.|
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~-r~d~~~~~~y~~a-f~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~I 88 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESA-NADLAGRAPDHHA-YAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTT 88 (154)
T ss_pred hccHhhHHHHHHHHHhcccccc-cccccccchhHHH-HHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEE
Confidence 4578999999999877322221 1111111112222 44444434444 444459999999988665432 2224566
Q ss_pred E-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 88 G-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 88 ~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
. ++|+|++||+|+|+++++.+++++++. |+.+++
T Consensus 89 e~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~--Gc~~ly 123 (154)
T PHA00673 89 ESIFVAAAHRPGGAGMALLRATEALARDL--GATGLY 123 (154)
T ss_pred EEEEEChhccCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 5 677999999999999999999999887 888765
No 27
>PHA01807 hypothetical protein
Probab=99.37 E-value=2.7e-11 Score=72.41 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHHhCChhhhhhcCC-CCCCCHHHH-HHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEE-E-
Q 042231 13 FKATDVDDFMLWAGDEQVTRSLRW-NTFTSGEEA-LTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADI-G- 88 (124)
Q Consensus 13 ~~~~d~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i-~- 88 (124)
++.+|++.+..+.... ...+ +. .+..+.++. ..+...........+++..++++||++++...... +.+++ +
T Consensus 9 ~~~~d~~~~~~l~l~~-l~e~-p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~--~~~~i~~l 84 (153)
T PHA01807 9 AKAGTPSELQGLCWLA-IQEL-EEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDP--HVGPCLGV 84 (153)
T ss_pred hhhCCHHHHHHHHHHH-HHhC-ccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCc--ceeeeccc
Confidence 4567888888875322 1111 21 112333443 44444344333344555569999999998764432 12333 3
Q ss_pred --EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 89 --YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 89 --~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
++|+|+|||+|+|+.+++.+++++++. ++..|
T Consensus 85 ~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~--G~~~l 118 (153)
T PHA01807 85 QWQYVLPEYRNAGVAREFLRELIRLAGEG--NLPLI 118 (153)
T ss_pred eeEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEE
Confidence 588999999999999999999999875 76654
No 28
>PRK10562 putative acetyltransferase; Provisional
Probab=99.35 E-value=9.7e-12 Score=73.75 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=61.0
Q ss_pred EeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEE-
Q 042231 10 LRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIG- 88 (124)
Q Consensus 10 lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~- 88 (124)
|||++.+|++.+.+++.++....+ +.............+.+...+....+++..++++||++.+... ..++
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-------~~i~~ 73 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAH-PFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-------RFVGA 73 (145)
T ss_pred cccccchhhHHHHHHHHHhccccC-CCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-------cEEEE
Confidence 799999999999998766543211 1111111222233333433333445556668999999998542 2455
Q ss_pred EEeCccccccChHHHHHHHHHHH
Q 042231 89 YAIAVKYWGHGIASKAVKLALNE 111 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~ 111 (124)
++|+|+|||+|+|+.+++.+++.
T Consensus 74 ~~v~~~~rg~G~g~~ll~~~~~~ 96 (145)
T PRK10562 74 LFVAPKAVRRGIGKALMQHVQQR 96 (145)
T ss_pred EEECHHHcCCCHHHHHHHHHHhh
Confidence 78899999999999888877663
No 29
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.32 E-value=3e-11 Score=71.08 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=74.9
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEE
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIG 88 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~ 88 (124)
.+|.++.+|+..+.++...-....- .-+.+.++.+.-+..+ +++..+|.+||++.+.+..... .+|+.
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gi---l~~rs~~~le~~i~dF-------~i~E~~g~viGC~aL~~~~~~~--~gE~~ 69 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGI---LLRRSREQLEEEIDDF-------TIIERDGKVIGCAALHPVLEED--LGELR 69 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccc---cchhhHHHHHHHHhhh-------eeeeeCCcEEEEEeecccCccC--eeeEE
Confidence 5899999999999998643222111 1134566666555553 3555599999999999643332 67765
Q ss_pred -EEeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 89 -YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 89 -~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
..|+|+|||+|+|.++++.++..+.+. |++++.+
T Consensus 70 ~laV~pd~r~~G~G~~Ll~~~~~~Ar~~--gi~~lf~ 104 (153)
T COG1246 70 SLAVHPDYRGSGRGERLLERLLADAREL--GIKELFV 104 (153)
T ss_pred EEEECHHhcCCCcHHHHHHHHHHHHHHc--CCceeee
Confidence 778999999999999999999999765 9998764
No 30
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.30 E-value=3.6e-11 Score=69.64 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=64.4
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCC--CC--ce
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGD--DR--CR 84 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~--~~--~~ 84 (124)
.||+++++|.+++.++++..-... .+..+...+...... ....+++.+++++||.+.+.+.... .. ..
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~ 72 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDS-------ESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKA 72 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCC-------CCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEE
Confidence 489999999999999864322111 111122233333332 3456666779999999998664221 11 13
Q ss_pred eEEE-EEeCccccccChHHHHHHHHHHHHHhcccCcc
Q 042231 85 ADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVL 120 (124)
Q Consensus 85 ~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~ 120 (124)
+.++ ..++|+|||||+|+.+++++++.+.++ ++.
T Consensus 73 ~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~--g~~ 107 (127)
T PF13527_consen 73 AYIGDVAVDPEYRGRGLGRQLMRALLERARER--GVP 107 (127)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--T-S
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCC
Confidence 4444 566999999999999999999999875 544
No 31
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.28 E-value=1.6e-10 Score=66.94 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEE-EcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhccc
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSIC-IYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFP 117 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~ 117 (124)
+.+.+.....+. .....+++. .++++||++.+...... ....++.|+|+|||+|+|+++++.+++++++.
T Consensus 16 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~vg~~~~~~~~~~---~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~-- 86 (131)
T TIGR01575 16 PWTEAQFAEELA----NYHLCYLLARIGGKVVGYAGVQIVLDE---AHILNIAVKPEYQGQGIGRALLRELIDEAKGR-- 86 (131)
T ss_pred CCCHHHHHHHhc----CCCceEEEEecCCeEEEEEEEEecCCC---eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--
Confidence 345555444443 233333433 48999999998664322 33456788999999999999999999999875
Q ss_pred Cccccc
Q 042231 118 DVLRLQ 123 (124)
Q Consensus 118 ~~~~i~ 123 (124)
++++++
T Consensus 87 ~~~~i~ 92 (131)
T TIGR01575 87 GVNEIF 92 (131)
T ss_pred CCCeEE
Confidence 666654
No 32
>PLN02825 amino-acid N-acetyltransferase
Probab=99.26 E-value=3e-11 Score=84.18 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=72.6
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEE
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIG 88 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~ 88 (124)
.||+++.+|++.+.+++..-+... .....+.++.... . ...+++..|+++||++.+.+.... ..++++
T Consensus 369 ~IR~At~eDi~~I~~Li~~lee~g---~lv~rs~e~le~e----i---~~f~V~e~Dg~IVG~aal~~~~~~--~~aEI~ 436 (515)
T PLN02825 369 GTRMARVEDLAGIRQIIRPLEESG---ILVRRTDEELLRA----L---DSFVVVEREGSIIACAALFPFFEE--KCGEVA 436 (515)
T ss_pred hheeCCHHHHHHHHHHHHHHHHcC---CCcCCCHHHHHhc----C---CcEEEEEECCEEEEEEEEEeecCC--CcEEEE
Confidence 589999999999999886432211 1122344433321 1 234455559999999998765332 268886
Q ss_pred -EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 89 -YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 89 -~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
++|+|+|||+|+|+++++.+++++.+. |++++.
T Consensus 437 ~laV~P~yRGkGiG~~LL~~le~~Ar~~--G~~~L~ 470 (515)
T PLN02825 437 AIAVSPECRGQGQGDKLLDYIEKKAASL--GLEKLF 470 (515)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 888999999999999999999999875 888764
No 33
>PRK09831 putative acyltransferase; Provisional
Probab=99.25 E-value=8.9e-11 Score=69.81 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=62.9
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHH-------HHhcCCCCceEEEEEcCeEeEEEEeeeCCCCC
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYI-------KDVCIPHPWRRSICIYDRSIGFVSIFPGSGDD 81 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~ 81 (124)
.+|+++++|++.+.++..+....... ...+.++...|. ..... ....+++..++++||++.+...
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~iiG~~~~~~~---- 73 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTAS---QHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVINAQPVGFITCIEH---- 73 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhh---hcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEECCEEEEEEEehhc----
Confidence 58999999999999988754322221 123444433331 11112 2334445559999999988431
Q ss_pred CceeEEEEEeCccccccChHHHHHHHHHHHHHh
Q 042231 82 RCRADIGYAIAVKYWGHGIASKAVKLALNEVFK 114 (124)
Q Consensus 82 ~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~ 114 (124)
..-.++++|+|||+|+|+.++..+++.++.
T Consensus 74 ---~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~ 103 (147)
T PRK09831 74 ---YIDMLFVDPEYTRRGVASALLKPLIKSESE 103 (147)
T ss_pred ---eeeeEEECHHHcCCCHHHHHHHHHHHHhhh
Confidence 122477899999999999999999998754
No 34
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.24 E-value=1.2e-10 Score=58.87 Aligned_cols=60 Identities=28% Similarity=0.365 Sum_probs=49.6
Q ss_pred EEEEcCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 61 SICIYDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 61 ~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.+..++++||++.+...+...+ .++++ +.++|+|||+|+|++++..+++++++. +++++.
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~-~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~v~ 63 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGD-TAYIGDLAVLPEYRGKGIGSALLEAAEEEARER--GAKRLR 63 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCc-cEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHc--CCcEEE
Confidence 3445899999999988654323 67777 888999999999999999999999874 888765
No 35
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.20 E-value=8e-10 Score=62.97 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=53.3
Q ss_pred CHHHHHHHhCChhhhhhcCCCCCCCHHHH------HHHHHHhcCCCC-ceEEEEEcCeEeEEEEeeeCCCCCCceeEEE-
Q 042231 17 DVDDFMLWAGDEQVTRSLRWNTFTSGEEA------LTYIKDVCIPHP-WRRSICIYDRSIGFVSIFPGSGDDRCRADIG- 88 (124)
Q Consensus 17 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~- 88 (124)
|++.+.+++.+........ .+.++. ...+......+. ..+++..++++||++.+.+ . ..|.
T Consensus 1 D~~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~~---~----~~i~~ 69 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWD----YGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLEP---D----GEISH 69 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTT----TSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEET---C----EEEEE
T ss_pred CHHHHHHHHHHHHHHhccC----CCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEcC---C----CeEEE
Confidence 5666777665533332211 133332 222333333343 4555566999999999962 1 1233
Q ss_pred EEeCccccccChHHHHHHHHHHHHH
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVF 113 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~ 113 (124)
+.|+|+|||+|+|+++++.+++++.
T Consensus 70 l~v~p~~r~~Gig~~Ll~~~~~~~~ 94 (117)
T PF13673_consen 70 LYVLPEYRGRGIGRALLDAAEKEAK 94 (117)
T ss_dssp EEE-GGGTTSSHHHHHHHHHHHHHT
T ss_pred EEEChhhcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999999883
No 36
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.19 E-value=1.8e-10 Score=61.80 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=46.8
Q ss_pred EcCeEeEEEEeeeCCCC---CCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 64 IYDRSIGFVSIFPGSGD---DRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 64 ~~~~~iG~~~l~~~~~~---~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+++++||++.+...... ........+.|+|+|||+|+|+.+++.+++++.+. +++++.
T Consensus 3 ~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~--g~~~i~ 63 (83)
T PF00583_consen 3 EDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKR--GIKRIY 63 (83)
T ss_dssp ETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT--TESEEE
T ss_pred CCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhc--CccEEE
Confidence 48999999999876554 23234455788999999999999999999999884 887764
No 37
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.19 E-value=5.8e-10 Score=79.89 Aligned_cols=102 Identities=14% Similarity=0.038 Sum_probs=69.3
Q ss_pred ceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeE
Q 042231 7 RITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRAD 86 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~ 86 (124)
.+.||+++++|++.+.++...-. .. ....+.+.++. .. .....+++..++++||++.+...+.. .++
T Consensus 463 gm~IR~a~~~D~~~I~~L~~~~~--~~-~~~~~~~~~~l----~~---~~~~~~Va~~~g~IVG~~~l~~~~~~---~~~ 529 (614)
T PRK12308 463 GVKVRPARLTDIDAIEGMVAYWA--GL-GENLPRSRNEL----VR---DIGSFAVAEHHGEVTGCASLYIYDSG---LAE 529 (614)
T ss_pred CCEEEECCHHHHHHHHHHHHHHH--hh-hcccccCHHHH----hc---ccCcEEEEEECCEEEEEEEEEEcCCC---eEE
Confidence 47899999999999998763211 00 11112232221 11 12234445559999999998764332 456
Q ss_pred E-EEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 87 I-GYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 87 i-~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+ .++|+|+|||||+|+++++.+++++.+. +++++.
T Consensus 530 I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~--g~~~i~ 565 (614)
T PRK12308 530 IRSLGVEAGWQVQGQGSALVQYLVEKARQM--AIKKVF 565 (614)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 6 5888999999999999999999999875 887764
No 38
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.16 E-value=2.4e-10 Score=78.80 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=69.5
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEE
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIG 88 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~ 88 (124)
.+|+++.+|++.+.++.+...... + .....+.++.... ...+++..++++||++.+...... ..++++
T Consensus 284 ~IR~at~~Dl~~I~~L~~~~~~~~---~----~~~~~~~~l~~~~---~~~~V~~~dg~iVG~~~~~~~~~~--~~~~I~ 351 (429)
T TIGR01890 284 SIRQATIDDIGGIAALIRPLEEQG---I----LVRRSREYLEREI---SEFSIIEHDGNIIGCAALYPYAEE--DCGEMA 351 (429)
T ss_pred heEECCHHHHHHHHHHHHHHHHcC---C----chhhhHHHHHhhc---CcEEEEEECCEEEEEEEEEecCCC--CeEEEE
Confidence 699999999999999875322111 1 1112222333321 223444459999999999875332 257776
Q ss_pred -EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 89 -YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 89 -~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
++|+|+|||+|+|+++++.+++++.+. +++++
T Consensus 352 ~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~--G~~~l 384 (429)
T TIGR01890 352 CLAVSPEYQDGGRGERLLAHIEDRARQM--GISRL 384 (429)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEE
Confidence 788999999999999999999999876 77765
No 39
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.15 E-value=2e-09 Score=70.69 Aligned_cols=111 Identities=7% Similarity=-0.009 Sum_probs=66.5
Q ss_pred ceEEeeCCC-CCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE--cCeEeEEEEeeeCCCCCCc
Q 042231 7 RITLRQFKA-TDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI--YDRSIGFVSIFPGSGDDRC 83 (124)
Q Consensus 7 ~i~lr~~~~-~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~iG~~~l~~~~~~~~~ 83 (124)
-+.+|+++. .|...+.++.+... ...+....++.++...............+++.. ++++||++.+...... ..
T Consensus 149 g~~~r~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~-~~ 225 (292)
T TIGR03448 149 GVTVRAYVGAPDDAEWLRVNNAAF--AWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDE-PA 225 (292)
T ss_pred CeEeeccCCCcchHHHHHHHHHHh--hCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCC-Cc
Confidence 578899864 47777776643221 111111234445444433221111223444444 5899999866543221 11
Q ss_pred eeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 84 RADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 84 ~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.+++. +.|+|+|||||+|++++..+++++++. +++++
T Consensus 226 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~--g~~~v 263 (292)
T TIGR03448 226 LGEVYVVGVDPAAQGRGLGDALTLIGLHHLAAR--GLPAV 263 (292)
T ss_pred eeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEE
Confidence 45554 577999999999999999999999875 76654
No 40
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.13 E-value=1.6e-09 Score=62.28 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=76.6
Q ss_pred ceEEeeCCCCCHHH-HHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEE--EE--cCeEeEEEEeeeCCC--
Q 042231 7 RITLRQFKATDVDD-FMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSI--CI--YDRSIGFVSIFPGSG-- 79 (124)
Q Consensus 7 ~i~lr~~~~~d~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~--~~~~iG~~~l~~~~~-- 79 (124)
.+.|||+..+|+.. +.+++++- ..-...+.+++.+.+..+....++.+++ ++ .+++||.+++.....
T Consensus 6 ~~~lR~L~~~D~~kGf~elL~qL------T~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfI 79 (150)
T KOG3396|consen 6 GFKLRPLEEDDYGKGFIELLKQL------TSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFI 79 (150)
T ss_pred ceEEeecccccccchHHHHHHHH------hhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhh
Confidence 38999999999986 66665431 1223578999999888887766643333 33 789999999855211
Q ss_pred -CCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 80 -DDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 80 -~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.....+.|. ..++++||||++|+.++..|++.+++- |+=++
T Consensus 80 h~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~l--gcYKi 122 (150)
T KOG3396|consen 80 HGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSL--GCYKI 122 (150)
T ss_pred hcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhc--CcEEE
Confidence 111134444 566999999999999999999999764 76543
No 41
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.13 E-value=5.1e-10 Score=77.43 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=69.3
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEE
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADI 87 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i 87 (124)
+.+|+++.+|++.+.+++....... +....+.+. +... ....+++..++++||++.+...... ..+++
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~---~~~~~~~~~----l~~~---~~~~~va~~dg~iVG~~~~~~~~~~--~~~~I 362 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQG---ILVRRSREQ----LERE---IDKFTVIERDGLIIGCAALYPFPEE--KMGEM 362 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcC---CccccCHHH----Hhcc---cCcEEEEEECCEEEEEEEEEEcCCC--CeEEE
Confidence 5799999999999999874211111 111223332 2221 1224455559999999988775432 25677
Q ss_pred E-EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 88 G-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 88 ~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
. ++|+|+|||+|+|+++++.+++++.+. +++++
T Consensus 363 ~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~l 396 (441)
T PRK05279 363 ACLAVHPDYRGSGRGERLLKRIEQRARQL--GLKRL 396 (441)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEE
Confidence 5 788999999999999999999999776 77765
No 42
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.07 E-value=4.5e-09 Score=70.03 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=75.3
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-----cCeEeEEEEeeeCCCC
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-----YDRSIGFVSIFPGSGD 80 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~iG~~~l~~~~~~ 80 (124)
..+.||+++++|++.+.++.+....... ....++.++...++.. . ..+++.. ++.+||++.+.....
T Consensus 185 m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~--~~~~~s~~~i~~~l~~----~-~~~~~~~~d~~gd~givG~~~~~~~~~- 256 (320)
T TIGR01686 185 LSLNISKNDEQNVQRVEELLGRTNQFNA--TYTRLNQEDVAQHMQK----E-EIVTVSMSDRFGDSGIIGIFVFEKKEG- 256 (320)
T ss_pred CEEEEEECChhhhHHHHHHHHhHHhhhc--cCccCCHHHHHHHhcC----C-CEEEEEEEecCCCCceEEEEEEEecCC-
Confidence 3578999999999999999864432221 1234677777777644 2 3443432 568999998865322
Q ss_pred CCceeE-EEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 81 DRCRAD-IGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 81 ~~~~~~-i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.++ ..++|++++||+|+|+.++..+++++.+. |++++.
T Consensus 257 ---~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~--G~~~i~ 295 (320)
T TIGR01686 257 ---NLFIDDLCMSCRALGRGVETRMLRWLFEQALDL--GNHNAR 295 (320)
T ss_pred ---cEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHc--CCCeEE
Confidence 344 45788999999999999999999999875 888664
No 43
>PRK01346 hypothetical protein; Provisional
Probab=99.07 E-value=4.8e-09 Score=72.03 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=71.9
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCC----C-
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSG----D- 80 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~----~- 80 (124)
+.+.+|+++.+|++.+.++.+.. + . ...+.++...+.... . ....+++.+++++||++.+..... .
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~----f-~--~~~~~~~~~~~~~~~-~-~~~~~va~~~~~lvg~~~~~~~~~~~~~~~ 75 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATG----F-G--DSPSDEELEAWRALV-E-PDRTLGAFDGDEVVGTAGAFDLRLTVPGGA 75 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHH----c-C--CCCChHHHHHHHHhc-C-cCCeEEEEECCEEEEEEEEeccccccCCCC
Confidence 46789999999999999986432 1 1 112455555555433 2 334556666999999999865321 1
Q ss_pred C-CceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcc
Q 042231 81 D-RCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVL 120 (124)
Q Consensus 81 ~-~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~ 120 (124)
. ...+..+..++|+|||+|+|++++..+++.+.+. |+.
T Consensus 76 ~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~--g~~ 114 (411)
T PRK01346 76 VLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRER--GEP 114 (411)
T ss_pred ccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHC--CCc
Confidence 1 1134455788999999999999999999999775 654
No 44
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.06 E-value=3.6e-09 Score=74.93 Aligned_cols=105 Identities=11% Similarity=-0.033 Sum_probs=68.3
Q ss_pred ceEEeeC-CCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE--cCeEeEEEEeeeCC----C
Q 042231 7 RITLRQF-KATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI--YDRSIGFVSIFPGS----G 79 (124)
Q Consensus 7 ~i~lr~~-~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~iG~~~l~~~~----~ 79 (124)
.+.||++ +++|++.+.+++.... . .+.+.+... ..........+++.+ +|++||++...... .
T Consensus 82 g~~IR~~~~~~D~~~I~~L~~~~~------~-~p~~~~~~~---~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d 151 (547)
T TIGR03103 82 GFTVRRLRGPADVDAINRLYAARG------M-VPVRVDFVL---DHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFND 151 (547)
T ss_pred CcEEEeCCChhHHHHHHHHHHhcC------C-CCCCHHHHH---HHhcCCCceEEEEEECCCCeEEEEEEEEeccccccC
Confidence 4889998 6799999999886521 1 123333322 222122333444443 68999999764321 1
Q ss_pred CCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 80 DDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 80 ~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.........++|+|+|||+|+|+++++.+++++.+. |+.++.
T Consensus 152 ~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~--G~~~i~ 193 (547)
T TIGR03103 152 PEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSR--GCAYMD 193 (547)
T ss_pred CCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 111133456888999999999999999999998765 887764
No 45
>PRK10314 putative acyltransferase; Provisional
Probab=99.05 E-value=2e-09 Score=64.53 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=47.3
Q ss_pred ceEEEEEcCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccc
Q 042231 58 WRRSICIYDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLR 121 (124)
Q Consensus 58 ~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~ 121 (124)
.++++..++++||++.+...+.... .+.++ +.++|+|||+|+|+++++.+++++.+.. +.+.
T Consensus 49 ~h~~~~~~~~~vg~~r~~~~~~~~~-~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~-~~~~ 111 (153)
T PRK10314 49 RHILGWKNDELVAYARILKSDDDLE-PVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHW-PDKP 111 (153)
T ss_pred EEEEEEECCEEEEEEEEecCCCCCC-CEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHC-CCCc
Confidence 3445556999999999976433222 46787 7779999999999999999999987754 4443
No 46
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.02 E-value=4.6e-09 Score=56.00 Aligned_cols=53 Identities=26% Similarity=0.368 Sum_probs=40.6
Q ss_pred ceEEEEEcCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHh
Q 042231 58 WRRSICIYDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFK 114 (124)
Q Consensus 58 ~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~ 114 (124)
..+++.+++++||++.+..... ...++ +.|+|+|||+|+|+++++.+.+.+..
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~----~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~ 57 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED----FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS 57 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT----EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC
T ss_pred EEEEEEECCEEEEEEEEEEcCC----EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC
Confidence 3455666999999999966433 44555 67799999999999999999887743
No 47
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.96 E-value=5.4e-09 Score=68.61 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=61.5
Q ss_pred eCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEEEEe
Q 042231 12 QFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIGYAI 91 (124)
Q Consensus 12 ~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~~~i 91 (124)
|++++|++.+.++....... .+ .++.+.+.. ..+..........+++..++++||++.+....... .....++|
T Consensus 5 ~l~~~d~~~v~~L~~~~~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~l~V 78 (292)
T TIGR03448 5 ALDADLRRDVRELLAAATAV--DG-VAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPARGTD--PAMAELVV 78 (292)
T ss_pred cCCHHHHHHHHHHHHHHHhc--CC-CCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcCCCCc--ceEEEEEE
Confidence 67788999999887643322 11 233454433 33322111223345555689999999987753322 22334688
Q ss_pred CccccccChHHHHHHHHHHHHH
Q 042231 92 AVKYWGHGIASKAVKLALNEVF 113 (124)
Q Consensus 92 ~~~~~gkG~g~~~~~~l~~~~~ 113 (124)
+|+|||+|+|+++++.+++.+.
T Consensus 79 ~p~~rg~GiG~~Ll~~~~~~~~ 100 (292)
T TIGR03448 79 HPAHRRRGIGRALIRALLAKGG 100 (292)
T ss_pred CHhhcCCCHHHHHHHHHHHhcc
Confidence 9999999999999999998764
No 48
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.92 E-value=7.9e-08 Score=58.22 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=70.4
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCC-CceEEEEEcCeEeEEEEeeeCCCC--CC
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPH-PWRRSICIYDRSIGFVSIFPGSGD--DR 82 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~iG~~~l~~~~~~--~~ 82 (124)
..+.+|+-++.|+..+.++....-. +......-..++...... ...++..++|++||.+-+++..-. ..
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~--------~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~ 73 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFG--------PGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEEL 73 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhh--------cchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCccc
Confidence 3568899999999998887432221 123333333344332111 223444459999999999886554 22
Q ss_pred ceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 83 CRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 83 ~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
...-++ ..|+|++||||+|+++++..++.+... +...+
T Consensus 74 ~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~--G~~~v 112 (171)
T COG3153 74 GWLGLAPLAVDPEYQGQGIGSALVREGLEALRLA--GASAV 112 (171)
T ss_pred ceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHC--CCCEE
Confidence 233444 677999999999999999999999765 66544
No 49
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.87 E-value=5.3e-08 Score=57.72 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=49.4
Q ss_pred CceEEEEEcC--eEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 57 PWRRSICIYD--RSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 57 ~~~~~i~~~~--~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+..+++..|+ ..||.+.+......+...++|. ..|+++|||+|||+++++.+++++.+. |+++|+
T Consensus 55 p~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~--g~~eVv 122 (165)
T KOG3139|consen 55 PCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSR--GYSEVV 122 (165)
T ss_pred ceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHC--CCcEEE
Confidence 3344444433 2699999877655544478877 677999999999999999999999877 888764
No 50
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.75 E-value=1.3e-07 Score=50.27 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=41.6
Q ss_pred EEEEEcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcc
Q 042231 60 RSICIYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVL 120 (124)
Q Consensus 60 ~~i~~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~ 120 (124)
|.+..+|+.+|.+.+.. .++......-.+.|++||+|+|+.+++++++++.++ +.+
T Consensus 2 F~~~~~g~~~a~l~Y~~---~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~--~~k 57 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE---DGGVIVITHTEVPPELRGQGIAKKLVEAALDYAREN--GLK 57 (78)
T ss_dssp EEEESSTTEEEEEEEEE---SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT--T-E
T ss_pred EEEEECCEEEEEEEEEe---CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHC--CCE
Confidence 34445788999999977 222134455677999999999999999999999876 543
No 51
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.70 E-value=3.7e-07 Score=55.57 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=64.0
Q ss_pred CceEEeeCCCCCHH--HHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEc----C----eEeEEEEee
Q 042231 6 SRITLRQFKATDVD--DFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIY----D----RSIGFVSIF 75 (124)
Q Consensus 6 ~~i~lr~~~~~d~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~----~~iG~~~l~ 75 (124)
....+|++...|+. .+..+........ .+++.+.+...+.. .....++... + +++|++...
T Consensus 10 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~----~~~~~~v~~~~~~~~~~~~~~~G~~~~~ 80 (177)
T COG0456 10 DKVTIREAINKDLLDVALAALEARTFDIR-----LPWSREYFEKDLTQ----APELLLVAETGGLDGLLDGKVVGFLLVR 80 (177)
T ss_pred cceehhhhhhcccchHHHHHHhhhcCCCC-----CcchHHHHHHHHhh----CcceeEEEEecccCCCcccceeEEEEEE
Confidence 45778888888888 5555543322211 23455555555554 3333333332 2 589999986
Q ss_pred eCCCCC---CceeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 76 PGSGDD---RCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 76 ~~~~~~---~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
...... .......+.|+|+|||+|+|++++..+++.+.+.
T Consensus 81 ~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~ 123 (177)
T COG0456 81 VVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRER 123 (177)
T ss_pred EecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhc
Confidence 432321 1133455888999999999999999999998776
No 52
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.66 E-value=1.5e-07 Score=62.08 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=43.3
Q ss_pred eEEEE-EcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 59 RRSIC-IYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 59 ~~~i~-~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.+++. +++++||++++... ..-.++|+|+|||+|+|+++++.+++++.+. |++++.
T Consensus 7 ~~~v~~~~~~iVG~~~l~~~-------~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~i~ 63 (297)
T cd02169 7 TVGIFDDAGELIATGSIAGN-------VLKCVAVCPKYQGEGLALKIVSELINKAYEE--GIFHLF 63 (297)
T ss_pred EEEEEEECCEEEEEEEeccC-------EEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 34443 47999999988531 1234788999999999999999999999776 777653
No 53
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.65 E-value=3.2e-07 Score=61.38 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHhc-C--CC-CceEEEEEcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 40 TSGEEALTYIKDVC-I--PH-PWRRSICIYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 40 ~~~~~~~~~~~~~~-~--~~-~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
...+++.+|+.... . .+ ...+++.+++++||++++... .--.++|+|+|||+|+|+.++..+++++++.
T Consensus 10 ~~~~~v~~fL~~~~l~~d~~~d~~vv~~~~~~lVg~g~l~g~-------~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~ 82 (332)
T TIGR00124 10 LKACGIKNFLHQNELSLDAPLEIFIAVYEDEEIIGCGGIAGN-------VIKCVAIDESLRGEGLALQLMTELENLAYEL 82 (332)
T ss_pred HHHHHHHHHHHhcCCcccCCCCEEEEEEECCEEEEEEEEecC-------EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc
Confidence 45556777777652 2 12 234444459999999998531 1235788999999999999999999999876
Q ss_pred ccCcccc
Q 042231 116 FPDVLRL 122 (124)
Q Consensus 116 ~~~~~~i 122 (124)
|+.++
T Consensus 83 --G~~~l 87 (332)
T TIGR00124 83 --GRFHL 87 (332)
T ss_pred --CCCEE
Confidence 66554
No 54
>PRK13688 hypothetical protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=52.34 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=37.7
Q ss_pred CceEEEEEcCeEeEEEEeeeCCC-------CCCceeEEE-EEeCccccccChHHHHHHHHHH
Q 042231 57 PWRRSICIYDRSIGFVSIFPGSG-------DDRCRADIG-YAIAVKYWGHGIASKAVKLALN 110 (124)
Q Consensus 57 ~~~~~i~~~~~~iG~~~l~~~~~-------~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~ 110 (124)
...+++.+++++||++.+...+. .....++|. +.|+|+|||||+|+++++.+.+
T Consensus 45 ~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~ 106 (156)
T PRK13688 45 SPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS 106 (156)
T ss_pred CCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH
Confidence 34456666999999988754321 112245555 7789999999999999876544
No 55
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.47 E-value=1.8e-06 Score=56.05 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=42.7
Q ss_pred ceEEEEEcCeEeEE-EEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 58 WRRSICIYDRSIGF-VSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 58 ~~~~i~~~~~~iG~-~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
..+++..++++|.. .+....+. ..||++.-+|+|||||+|+.+..+++.+|.++
T Consensus 166 ~Gf~i~~~~~iVs~~~s~~~~~~----~~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~ 220 (265)
T PF12746_consen 166 FGFCILHDGEIVSGCSSYFVYEN----GIEIDIETHPEYRGKGLATAVAAAFILECLEN 220 (265)
T ss_dssp -EEEEEETTEEEEEEEEEEEETT----EEEEEEEE-CCCTTSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCEEEEEEEEEEEECC----EEEEEEEECHHhhcCCHHHHHHHHHHHHHHHC
Confidence 56777789999854 44444322 57999999999999999999999999999987
No 56
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.45 E-value=9.3e-07 Score=51.67 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=49.3
Q ss_pred CceEEEEE-cCeEeEEEEeeeCCCCCCceeEEEEEe-CccccccChHHHHHHHHHHHHHhcccC
Q 042231 57 PWRRSICI-YDRSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKDFPD 118 (124)
Q Consensus 57 ~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~~~ 118 (124)
.++..... +|++++++.+.+...... ...||-.+ +|++||+|+|.+++..+++.+.+.+|+
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~-~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~ 111 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYE-EVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPD 111 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcC-ceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCC
Confidence 34444555 999999999988766654 36799666 999999999999999999999888753
No 57
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.29 E-value=1.2e-05 Score=51.66 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCcee
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRA 85 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~ 85 (124)
..+.+|..+..|.. +......+.+.. .....+.+......... .....+++..+|++|..++....++. .+
T Consensus 132 ~~~~~r~a~~~D~~-i~~~~~~~~l~~---~g~~~~~~~~~~~~~a~--g~~~~~f~~~d~~iVa~A~t~a~~~~---~~ 202 (268)
T COG3393 132 EELDVRLAAAKDMF-IPEVGLRATLDD---FGRADSRKEAVAVLNAL--GRSRTYFLEGDGKIVAKAETAAENPA---YA 202 (268)
T ss_pred ccceeeeeeccccc-chheeeeeeecc---cccCcchHHHHHHHHHh--hceeEEEEccCCcEEEeeeccccCCc---ce
Confidence 45566666666665 223222222222 12233333333333332 23344454557799999988764443 66
Q ss_pred EEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 86 DIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 86 ~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
.|+ .+.+|+|||||||+.++..+-.-...+
T Consensus 203 ~I~gV~T~peyR~kGyAt~lva~L~~~lL~e 233 (268)
T COG3393 203 QINGVYTHPEYRGKGYATALVATLAAKLLAE 233 (268)
T ss_pred EEEEEEcCHHHccccHHHHHHHHHHHHHHhC
Confidence 765 677999999999999999998766655
No 58
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.25 E-value=7.7e-06 Score=45.27 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=46.1
Q ss_pred CCceEEEEEcCeEeEEEEeeeCCCCCCceeEE-EEEeCccccccChHHHHHHHHHHHHHhcccCcc
Q 042231 56 HPWRRSICIYDRSIGFVSIFPGSGDDRCRADI-GYAIAVKYWGHGIASKAVKLALNEVFKDFPDVL 120 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i-~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~ 120 (124)
....+.+..+|..+|.+.+++..++ ...| .-.|.+++||||+|+.++..+++.+.+. +++
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~~~---~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~--g~k 74 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRGEN---LIIIDHTYVPDELRGQGIAQKLVEKALEEAREA--GLK 74 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCCCC---EEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHc--CCe
Confidence 3445566669999999999886554 2333 3466899999999999999999999876 553
No 59
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.13 E-value=3.2e-05 Score=46.09 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=60.7
Q ss_pred eEEeeCCCCCHHHHHH--HhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeeeCCC-C-CC
Q 042231 8 ITLRQFKATDVDDFML--WAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFPGSG-D-DR 82 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~~~-~-~~ 82 (124)
+.||+++.+|+-.+-. +++-|+. =+.+-|+......+...|+..+ +|++||++-..-..+ + ..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpEN------------yqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~ 69 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPEN------------YQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEP 69 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHH------------HhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCC
Confidence 3578888887766543 3333332 2334555555555556666665 999999988755331 1 22
Q ss_pred ceeE-EEEEeCccccccChHHHHHHHHHHHHHh
Q 042231 83 CRAD-IGYAIAVKYWGHGIASKAVKLALNEVFK 114 (124)
Q Consensus 83 ~~~~-i~~~i~~~~~gkG~g~~~~~~l~~~~~~ 114 (124)
+.+. -++.|..+||+.|+|++++.+...-..+
T Consensus 70 ~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E 102 (193)
T KOG3235|consen 70 PHGHITSLAVKRSYRRLGLAQKLMNQASRAMVE 102 (193)
T ss_pred CCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHH
Confidence 2344 4478899999999999999887654433
No 60
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.12 E-value=3.1e-05 Score=46.81 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=46.8
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
..++||...++......+ .+.+. ..|+++.||+|+|+.+++.+.+|+... ++++++
T Consensus 65 ~~~VigH~rLS~i~n~~~-al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~--gf~~~y 121 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDH-ALWVESVVVKKDQRGLGFGKFLMKSTEKWMREK--GFNEAY 121 (225)
T ss_pred ccceeeeeccccCCCCCc-eeEEEEEEEehhhccccHHHHHHHHHHHHHHHh--hhhhee
Confidence 678999999999877655 66665 455999999999999999999999887 777664
No 61
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.07 E-value=0.00026 Score=41.30 Aligned_cols=111 Identities=8% Similarity=-0.031 Sum_probs=70.4
Q ss_pred ceEEeeC-CCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCc-eEEEEEcCeEeEEEEeeeCCCCCCce
Q 042231 7 RITLRQF-KATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPW-RRSICIYDRSIGFVSIFPGSGDDRCR 84 (124)
Q Consensus 7 ~i~lr~~-~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~iG~~~l~~~~~~~~~~ 84 (124)
.+.++.. .++|++.+++++............++.+.+..+.++......+.. .+++..+|++||+........ . .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~~~--~-~ 95 (142)
T PF13480_consen 19 GVRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRHGG--T-L 95 (142)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEECC--E-E
Confidence 3566554 467888888877544333311122345666667777765443433 344445999998776655322 1 2
Q ss_pred eEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 85 ADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 85 ~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
...-...+|+|+..+.|+.++..+++++.+. |++.+
T Consensus 96 ~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~--g~~~~ 131 (142)
T PF13480_consen 96 YYWYGGYDPEYRKYSPGRLLLWEAIRWAIER--GLRYF 131 (142)
T ss_pred EEEEEEECHhhHhCCHHHHHHHHHHHHHHHC--CCCEE
Confidence 2222334899999999999999999999987 87654
No 62
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.95 E-value=0.00038 Score=42.78 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=59.0
Q ss_pred EeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE--cCeEeEEEEeeeCCC---C-CCc
Q 042231 10 LRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI--YDRSIGFVSIFPGSG---D-DRC 83 (124)
Q Consensus 10 lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~iG~~~l~~~~~---~-~~~ 83 (124)
+..+..+-++++.++..+.+ + ..-.++...|-..+.. .-+.++++. .+++|+.+.+...++ . +..
T Consensus 7 v~NP~~e~~d~fmk~~g~~r---~-----~Fk~~Di~~wk~sf~~-~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~p 77 (181)
T PF06852_consen 7 VINPPQEYFDQFMKLHGNER---W-----NFKRNDIKLWKESFDD-DYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKP 77 (181)
T ss_pred EeCCCHHHHHHHHHHhcCCc---c-----cccHHHHHHHHHhhcc-CeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCC
Confidence 44556667788888876531 1 1345556666666521 233444444 778999888865443 2 233
Q ss_pred eeEEE-EEeCccccccChHHHHHHHHHHHH
Q 042231 84 RADIG-YAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 84 ~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
-..+| +|++|+|||+|+++-.-..+.+..
T Consensus 78 l~~~G~~w~~p~yRg~~~~kl~~~~~~~~~ 107 (181)
T PF06852_consen 78 LQFIGFFWIDPEYRGKGIMKLQDDICMDEL 107 (181)
T ss_pred eEEEeeeeeCCcccCcchHHHHHHHHHHHh
Confidence 67788 577999999999976666655544
No 63
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.87 E-value=8.7e-05 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.3
Q ss_pred eEEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 85 ADIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 85 ~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
+.|+ ..+.|++||||+|+.++..+.+.+.+.
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~ 53 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLER 53 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3444 677999999999999999999888775
No 64
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=97.87 E-value=0.00011 Score=44.98 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=40.6
Q ss_pred eEEEEE--cCeEeEEEEeeeCCCCC-CceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 59 RRSICI--YDRSIGFVSIFPGSGDD-RCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 59 ~~~i~~--~~~~iG~~~l~~~~~~~-~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.|++.. .+.+||+..+...-+.. .........+.++|||+|||+.+++.+..-+... +.++|
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~--~~~kV 157 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSR--HMRKV 157 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHH--Hhhhh
Confidence 444444 33799999986632222 2133344566899999999999999998766544 44433
No 65
>PRK10456 arginine succinyltransferase; Provisional
Probab=97.86 E-value=0.00032 Score=47.06 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=60.5
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcC---------CCCceEEEEE--cCeEeEEEEeee
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCI---------PHPWRRSICI--YDRSIGFVSIFP 76 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~--~~~~iG~~~l~~ 76 (124)
+.+||++.+|++.|.++....-.-- ...+.+.+...+.+..... ...+.+++++ +|++||++++..
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~---TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a 78 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGL---TSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEV 78 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 6899999999999999864333211 1124566666655553211 1223445554 799999998743
Q ss_pred CC---------------------------------CCCCceeEEE-EEeCccccccChHHHHHHH
Q 042231 77 GS---------------------------------GDDRCRADIG-YAIAVKYWGHGIASKAVKL 107 (124)
Q Consensus 77 ~~---------------------------------~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~ 107 (124)
.- .+.....|++ +.++|+||+-|.|+.+-+.
T Consensus 79 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 79 AVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred cccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHH
Confidence 10 0122244554 7889999999998776543
No 66
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.85 E-value=0.00016 Score=48.50 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=55.5
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcC-----------CCCceEEEEE--cCeEeEEEEe
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCI-----------PHPWRRSICI--YDRSIGFVSI 74 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~--~~~~iG~~~l 74 (124)
+.+||++.+|++.|.++....-.-- ...+.+.+...+.+..... ...+.+++++ +|++||++++
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G~---TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I 78 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPGF---TSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAI 78 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT----TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEE
T ss_pred eEEecCchhhHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeE
Confidence 6799999999999999865332211 1124677766666553211 1123444454 7999999987
Q ss_pred eeCCC---------------------------------CCCceeEEE-EEeCccccccChHHHHHHHH
Q 042231 75 FPGSG---------------------------------DDRCRADIG-YAIAVKYWGHGIASKAVKLA 108 (124)
Q Consensus 75 ~~~~~---------------------------------~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l 108 (124)
...-. +.....|++ ..++|+||+-|.|+.+-+.=
T Consensus 79 ~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~R 146 (342)
T PF04958_consen 79 EAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSR 146 (342)
T ss_dssp ESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHH
T ss_pred EeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHH
Confidence 54110 122355655 78899999999998766543
No 67
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.78 E-value=7.6e-05 Score=53.00 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=41.9
Q ss_pred cCeEeEEEEeeeCCCCC-----Cc---eeEEEEE---------eCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 65 YDRSIGFVSIFPGSGDD-----RC---RADIGYA---------IAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~-----~~---~~~i~~~---------i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
++.+||++.+....... .. .-|+..+ .+++|||+|+|+.+++.+++++.+. |+++|.
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~--G~~~i~ 495 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE--GSEKIL 495 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 57899999998764321 11 2244433 3589999999999999999999876 887763
No 68
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.72 E-value=0.00037 Score=40.22 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEE-EEe
Q 042231 13 FKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIG-YAI 91 (124)
Q Consensus 13 ~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i 91 (124)
+++.|.-+|.+++ |..+.++...++ ......|+...+++++|-+.+..... .+.+. ++|
T Consensus 10 ls~Qd~iDL~KIw------------p~~~~~~l~~~l----~~~~~l~aArFNdRlLgAv~v~~~~~----~~~L~~l~V 69 (128)
T PF12568_consen 10 LSEQDRIDLAKIW------------PQQDPEQLEQWL----DEGHRLFAARFNDRLLGAVKVTISGQ----QAELSDLCV 69 (128)
T ss_dssp --HHHHHHHHHH-------------TTS--------------SSEEEEEEEETTEEEEEEEEEEETT----EEEEEEEEE
T ss_pred CCHHHHHHHHHhC------------CCCCHHHHHHHh----ccCCeEEEEEechheeeeEEEEEcCc----ceEEeeEEE
Confidence 3445555666664 334444444444 22344444445999999999987322 56776 677
Q ss_pred CccccccChHHHHHHHHHHHH
Q 042231 92 AVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 92 ~~~~~gkG~g~~~~~~l~~~~ 112 (124)
++.-|++|+|+.+++.+...+
T Consensus 70 RevTRrRGVG~yLlee~~rq~ 90 (128)
T PF12568_consen 70 REVTRRRGVGLYLLEEVLRQL 90 (128)
T ss_dssp -TT-SSSSHHHHHHHHHHHHS
T ss_pred eeccccccHHHHHHHHHHHHC
Confidence 999999999999998887654
No 69
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=97.68 E-value=0.00015 Score=44.70 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=62.0
Q ss_pred Cc-eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCC--
Q 042231 6 SR-ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDR-- 82 (124)
Q Consensus 6 ~~-i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~-- 82 (124)
.. +.|+++++.++..+-.+..+-- +.+.. .+|+..........-+...++..||.+.+........
T Consensus 14 ~e~~~l~~it~~nl~~~~~l~~~~f---------P~~y~--~kfy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~ 82 (187)
T KOG3138|consen 14 NELIELRLITPNNLKQLKQLNEDIF---------PISYV--DKFYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAK 82 (187)
T ss_pred CcceeeccCCcchHHHHHHHhcccc---------CcchH--HHHHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhh
Confidence 44 8999999999998877743211 11111 1256655554444333333666777666655433211
Q ss_pred c------eeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 83 C------RADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 83 ~------~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
+ ..-....+.++||.+|+|+.++..+.+++.+.
T Consensus 83 r~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~ 121 (187)
T KOG3138|consen 83 RLFGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEA 121 (187)
T ss_pred hhhccceeEEEeecccHHHHhcchHHHHHHHHHHHHhcc
Confidence 0 11334556899999999999999999999765
No 70
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.65 E-value=0.00071 Score=45.39 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=59.5
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcC---------CCCceEEEEE--cCeEeEEEEeeeC
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCI---------PHPWRRSICI--YDRSIGFVSIFPG 77 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~--~~~~iG~~~l~~~ 77 (124)
.+||++.+|++.|.++....-.-- ...+.+.+...+.+..... ...+.+++++ .|++||++++...
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G~---TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~ 77 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIGL---TSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 379999999999999865433211 1124566666665553221 1233445554 6999999987431
Q ss_pred C---------------------------------CCCCceeEEE-EEeCccccccChHHHHHHH
Q 042231 78 S---------------------------------GDDRCRADIG-YAIAVKYWGHGIASKAVKL 107 (124)
Q Consensus 78 ~---------------------------------~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~ 107 (124)
- .+....-|++ +.++|+||+-|.|+.+-+.
T Consensus 78 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 78 VGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred ccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHH
Confidence 0 0122244555 7889999999998776543
No 71
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.64 E-value=0.00075 Score=45.23 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=58.8
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhc-------C---CCCceEEEEE--cCeEeEEEEeee
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVC-------I---PHPWRRSICI--YDRSIGFVSIFP 76 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~i~~--~~~~iG~~~l~~ 76 (124)
.+||++.+|++.|.++....-.-- ...+.+.+...+.+.... . ...+.+++++ .|++||++++..
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~---TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a 77 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGV---TSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 379999999999999864332211 112456666555544211 1 1234455554 799999998743
Q ss_pred CC---------------------------------CCCCceeEEE-EEeCccccccChHHHHHHH
Q 042231 77 GS---------------------------------GDDRCRADIG-YAIAVKYWGHGIASKAVKL 107 (124)
Q Consensus 77 ~~---------------------------------~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~ 107 (124)
.- .+.....|++ +.++|+||+-|.|+.+-+.
T Consensus 78 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 78 SAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred cccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 10 0122244555 7889999999998776543
No 72
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.59 E-value=0.001 Score=44.64 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=58.4
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHH----h---cC--CCCceEEEEE--cCeEeEEEEeeeC
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKD----V---CI--PHPWRRSICI--YDRSIGFVSIFPG 77 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~--~~~~~~~i~~--~~~~iG~~~l~~~ 77 (124)
.+||++.+|++.|.++....-.-- ...+.+.+...+.+.. + .. ...+.+++++ .|++||++++...
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G~---TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~ 77 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGL---TSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAA 77 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 379999999999999864332111 1124566655555442 1 11 2233445554 7999999987431
Q ss_pred C---------------------------------CCCCceeEEE-EEeCccccccChHHHHHHH
Q 042231 78 S---------------------------------GDDRCRADIG-YAIAVKYWGHGIASKAVKL 107 (124)
Q Consensus 78 ~---------------------------------~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~ 107 (124)
- .+.....|++ +.++|+||+-|.|+.+-+.
T Consensus 78 vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 78 VGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred ccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 0 0122245555 7889999999999776543
No 73
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.49 E-value=0.00078 Score=38.40 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=40.6
Q ss_pred CCceEEEEEcCeEeEEEEeeeCCCCCCc--eeEEEEEeCccccccChHHHHHHHHHHHHHh
Q 042231 56 HPWRRSICIYDRSIGFVSIFPGSGDDRC--RADIGYAIAVKYWGHGIASKAVKLALNEVFK 114 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~~~~~~~~--~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~ 114 (124)
....|.+..++.+||++-+-..-..... .+.-.+.|-.+|||+|+|+++.+++-.....
T Consensus 36 ~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g 96 (143)
T COG5628 36 VREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWG 96 (143)
T ss_pred ccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhc
Confidence 4456777779999999887442221111 2233367889999999999999998655443
No 74
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.44 E-value=0.00036 Score=37.83 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=35.9
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEEEEe-CccccccChHHHHHHHHHHHHHhc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
+|.+|-.+-... ++|++..- .|+|||||+.+.++..+++++.+.
T Consensus 7 eG~PVSW~lmdq-------tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~ 51 (89)
T PF08444_consen 7 EGNPVSWSLMDQ-------TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKL 51 (89)
T ss_pred CCCEeEEEEecc-------cccccccccCHhHhcCCHHHHHHHHHHHHHHHC
Confidence 677777665533 68888777 799999999999999999988765
No 75
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.21 E-value=0.00046 Score=38.08 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.9
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
+.++|+|||+|+|+.++..+++++...
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~ 113 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKR 113 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHc
Confidence 788999999999999999999999764
No 76
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.04 E-value=0.0058 Score=36.77 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=41.3
Q ss_pred CceEEEEE--cCeEeEEEEeeeCC----CCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 57 PWRRSICI--YDRSIGFVSIFPGS----GDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 57 ~~~~~i~~--~~~~iG~~~l~~~~----~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
.+..++.. ++++||+++-.+.. .......+|. .+|++++|.|+++--+++++-.-+-..
T Consensus 77 ~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~ 142 (162)
T PF01233_consen 77 EWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQ 142 (162)
T ss_dssp GGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhc
Confidence 34666655 89999999975532 1222267888 478999999999998888887665443
No 77
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.03 E-value=0.00077 Score=42.01 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEEcC--eEeEEEEeeeCCC--------------------------------C--CCc
Q 042231 40 TSGEEALTYIKDVCIPHPWRRSICIYD--RSIGFVSIFPGSG--------------------------------D--DRC 83 (124)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~iG~~~l~~~~~--------------------------------~--~~~ 83 (124)
.++.+....+.. +.+..++...++ +++|.+.+..... + ...
T Consensus 13 nsPnDL~~LlDa---P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~ 89 (196)
T PF13718_consen 13 NSPNDLQLLLDA---PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLS 89 (196)
T ss_dssp B-HHHHHHHHH----TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSE
T ss_pred CCHHHHHHHhcC---CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhc
Confidence 356666665555 344455555577 9999888754111 0 000
Q ss_pred ee-EEEEEeCccccccChHHHHHHHHHHHHH
Q 042231 84 RA-DIGYAIAVKYWGHGIASKAVKLALNEVF 113 (124)
Q Consensus 84 ~~-~i~~~i~~~~~gkG~g~~~~~~l~~~~~ 113 (124)
.. -+-+.++|++|++|||+++++.+.+++.
T Consensus 90 g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~ 120 (196)
T PF13718_consen 90 GARIVRIAVHPDLQRMGYGSRLLQQLEQYAE 120 (196)
T ss_dssp EEEEEEEEE-CCC-SSSHHHHHHHHHHHT--
T ss_pred ceeEEEEEEChhhhcCCHHHHHHHHHHHHHh
Confidence 11 2446779999999999999999999984
No 78
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=96.94 E-value=0.048 Score=35.28 Aligned_cols=76 Identities=7% Similarity=-0.077 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEE--EcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcc
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSIC--IYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDF 116 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~ 116 (124)
+.+.++...|+..... ....+. .+|++||.+.+...... .--+=...+|++-.+++|+-++..-++++++.
T Consensus 127 ~~~~~~y~~Fl~~~~~---~t~~~ey~~~g~LiaVav~D~l~d~---lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~- 199 (240)
T PRK01305 127 PPSRDQYAQFLEDSWV---NTRFIEFRGDGKLVAVAVTDVLDDG---LSAVYTFYDPDEEHRSLGTFAILWQIELAKRL- 199 (240)
T ss_pred CCCHHHHHHHHhcCCC---CcEEEEEEeCCeEEEEEEEeccCCc---eeeEEEeeCCCccccCCHHHHHHHHHHHHHHc-
Confidence 4577788778776432 223332 49999999888664332 22232344999999999999999999999765
Q ss_pred cCcccc
Q 042231 117 PDVLRL 122 (124)
Q Consensus 117 ~~~~~i 122 (124)
|++-+
T Consensus 200 -gl~y~ 204 (240)
T PRK01305 200 -GLPYV 204 (240)
T ss_pred -CCCeE
Confidence 76654
No 79
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=96.93 E-value=0.00097 Score=34.54 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.0
Q ss_pred EEEeCccccccChHHHHHHHHHHHH
Q 042231 88 GYAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 88 ~~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
.+|++|.+|++|+++.+++.+.+..
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHhc
Confidence 3799999999999999999998653
No 80
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=96.88 E-value=0.017 Score=33.57 Aligned_cols=60 Identities=8% Similarity=-0.056 Sum_probs=49.0
Q ss_pred CCceEEEEEcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccc
Q 042231 56 HPWRRSICIYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLR 121 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~ 121 (124)
+...+.|.+.+.+.|++.+..+.+. +.|..-..+|.+|| ++.++-.++-+|+.+.. .++.
T Consensus 37 ~~~Y~gVyeg~~l~Gi~~v~~i~~~---~vecHa~y~P~fRG--~a~~~~~~F~kwlL~Ns-~f~~ 96 (151)
T PF11039_consen 37 DQLYLGVYEGGQLGGIVYVEEIQPS---VVECHAMYDPGFRG--YALEIGRLFCKWLLENS-PFQN 96 (151)
T ss_pred ccEEEEEEeceEEEEEEEEEEEeee---eEEEEeeeccccch--hHHHHHHHHHHHHhcCC-ceeE
Confidence 4455667779999999999887665 67777778999999 99999999999998886 6553
No 81
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.85 E-value=0.035 Score=32.40 Aligned_cols=77 Identities=5% Similarity=-0.030 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCc
Q 042231 40 TSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDV 119 (124)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~ 119 (124)
.+.++...++..... +....-...+|++||.+.+...... .--+=...+|++..+++|+-++..-+++|++. ++
T Consensus 23 ~~~~~y~~fl~~~~~-~t~~~~~~~~~kLiav~v~D~l~~g---lSaVY~fyDPd~~~~SlG~~~iL~eI~~a~~~--~l 96 (128)
T PF04377_consen 23 PSQEQYRRFLCSSPL-GTYHLEYRLDGKLIAVAVVDILPDG---LSAVYTFYDPDYSKRSLGTYSILREIELAREL--GL 96 (128)
T ss_pred cCHHHHHHHHhCCCC-CCEEEEEEeCCeEEEEEEeecccch---hhheeeeeCCCccccCcHHHHHHHHHHHHHHc--CC
Confidence 447777777665422 2222233349999999777654332 12232344999999999999999999999774 77
Q ss_pred ccc
Q 042231 120 LRL 122 (124)
Q Consensus 120 ~~i 122 (124)
+-+
T Consensus 97 ~y~ 99 (128)
T PF04377_consen 97 PYY 99 (128)
T ss_pred CEE
Confidence 644
No 82
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=96.64 E-value=0.0046 Score=37.06 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=53.0
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeeeCCCCCCceeEE
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFPGSGDDRCRADI 87 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~i 87 (124)
.+||++++|+-.+..+.-||-...+ +. +.- ..++..+ .....+... ++++.|++--.-......-.+.+
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~-~~--~Fy----l~yl~~~---pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~Hv 72 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETF-PI--SFY----LIYLAIW---PEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHV 72 (173)
T ss_pred ccccccHHHHHhhcccccccccccc-ce--ehh----HHHHHhC---hHHhEeccCCCCceEEEEeeeccccCcceeeEE
Confidence 4788888888776555545544433 11 111 1222222 112222223 77888877653322111112333
Q ss_pred -EEEeCccccccChHHHHHHHHHHHHH
Q 042231 88 -GYAIAVKYWGHGIASKAVKLALNEVF 113 (124)
Q Consensus 88 -~~~i~~~~~gkG~g~~~~~~l~~~~~ 113 (124)
+..+.|+||+.|+|+.++..+.+-..
T Consensus 73 TAltVap~~Rrl~la~~lm~~led~~d 99 (173)
T KOG3234|consen 73 TALTVAPDYRRLGLAAKLMDTLEDVSD 99 (173)
T ss_pred EEEEechhHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999877553
No 83
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=96.51 E-value=0.033 Score=31.90 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=32.6
Q ss_pred cCeEeEEEEeee-----CCCCCC-----ce-eEEEEEeCccccccChHHHHHHHHHH
Q 042231 65 YDRSIGFVSIFP-----GSGDDR-----CR-ADIGYAIAVKYWGHGIASKAVKLALN 110 (124)
Q Consensus 65 ~~~~iG~~~l~~-----~~~~~~-----~~-~~i~~~i~~~~~gkG~g~~~~~~l~~ 110 (124)
.+.++|++-+-. .+.... .. +-+.++|+++.|++|+|+++.+.+++
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~ 73 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQ 73 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHH
Confidence 356888776422 222211 12 66889999999999999999998875
No 84
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.31 E-value=0.051 Score=33.74 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=31.3
Q ss_pred eEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 67 RSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 67 ~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
.+||+.+=-+...+ ...++ +.+.|.||+||+|+.++....+..+.+
T Consensus 66 h~vGyFSKEk~s~~---~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 66 HIVGYFSKEKESWD---NNNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEEEESS-TT----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEEEecccC---CeeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 47888886554433 23455 455899999999999998877666544
No 85
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.85 E-value=0.16 Score=33.88 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=36.8
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
++++|++.++... .--...+++.+||-|++-+++..|++++.+.
T Consensus 45 ~~~iiacGsiaGn-------vikcvAvs~s~qGeGl~lkl~TeLin~ay~~ 88 (352)
T COG3053 45 NEEIIACGSIAGN-------VIKCVAVSESLQGEGLALKLVTELINLAYER 88 (352)
T ss_pred CCcEEEecccccc-------eeEEEEechhcccccHHHHHHHHHHHHHHHc
Confidence 5999999998662 2223677999999999999999999999876
No 86
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=95.67 E-value=0.087 Score=34.82 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=33.0
Q ss_pred CeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 66 DRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 66 ~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
..+||+.+=-+...++ ..++ +.+.|.||+||+|+-+++...+..+.+
T Consensus 140 ~h~vGYFSKEK~s~~~---nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 140 SHIVGYFSKEKVSAED---YNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cEEEEEeceeccccCC---CcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 3588887765544332 2444 445899999999999998887766544
No 87
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=95.36 E-value=0.17 Score=28.15 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=38.5
Q ss_pred eEEEEEcCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHH
Q 042231 59 RRSICIYDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNE 111 (124)
Q Consensus 59 ~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~ 111 (124)
.+.++.++...|.+.+.+..+. ...+.++ +.+.++.||.|+|..++.++.+.
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~~-~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d 62 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGVN-NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD 62 (99)
T ss_pred ceEEEEeCCceEEEEEeccCCC-CCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 4445557778888888764332 2267777 78899999999999999998864
No 88
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=95.18 E-value=0.046 Score=37.65 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=31.9
Q ss_pred CCceEEEEEcCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHH
Q 042231 56 HPWRRSICIYDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVF 113 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~ 113 (124)
+++.|+|.....-.|+|++.--.-.......++ +.+.|.||++|+|+.+++.-.+..+
T Consensus 232 dpFlFYVlte~d~~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr 290 (396)
T KOG2747|consen 232 DPFLFYVLTECDSYGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSR 290 (396)
T ss_pred cceEEEEEEecCCcceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhc
Confidence 456666655333333444432111111123454 4458999999999888877655443
No 89
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=95.13 E-value=0.041 Score=37.38 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=42.6
Q ss_pred CCceEEEEEcCeEeEEEEeeeC--CCCCCc---eeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 56 HPWRRSICIYDRSIGFVSIFPG--SGDDRC---RADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~~--~~~~~~---~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
....+++..+.++++.+-..+. ...+.. .+-.+....|+|||+|+.++++...+....++
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~k 102 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARK 102 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHc
Confidence 5566777788888887776532 112211 34445666999999999999999999877665
No 90
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=95.07 E-value=0.3 Score=31.68 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=45.6
Q ss_pred ceEEEEE--cCeEeEEEEeeeCC---C------------------------CCCceeEEE-EEeCcccccc--------C
Q 042231 58 WRRSICI--YDRSIGFVSIFPGS---G------------------------DDRCRADIG-YAIAVKYWGH--------G 99 (124)
Q Consensus 58 ~~~~i~~--~~~~iG~~~l~~~~---~------------------------~~~~~~~i~-~~i~~~~~gk--------G 99 (124)
.++++.. +|++||++.+.... + .....+|++ ++|+++||++ |
T Consensus 56 ~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~ 135 (241)
T TIGR03694 56 VHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSG 135 (241)
T ss_pred cEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCccccccccc
Confidence 3445544 58999999986531 0 012378888 7889999974 2
Q ss_pred --------------------hHHHHHHHHHHHHHhcccCccccc
Q 042231 100 --------------------IASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 100 --------------------~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+...++.++++++... |++.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--Gi~~~~ 177 (241)
T TIGR03694 136 VGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN--GITHWY 177 (241)
T ss_pred ccccccccccchhhcccCchHHHHHHHHHHHHHHHC--CCcEEE
Confidence 5577899999999876 888765
No 91
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=94.69 E-value=0.078 Score=33.02 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=40.8
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeeeC
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFPG 77 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~ 77 (124)
-+||++.+|++.+.+++++---. + ...+..+.|++++|+.... +-.+.+++.. +|++-.+++++..
T Consensus 30 glR~m~~~Dv~~v~~Ll~~yl~~-f-~l~~~fs~eev~Hw~lp~~-~Vv~syVve~~~~~ITDf~SFY~L 96 (190)
T PF02799_consen 30 GLRPMEEKDVPQVTKLLNKYLKK-F-DLAPVFSEEEVKHWFLPRK-NVVYSYVVEDPDGKITDFFSFYSL 96 (190)
T ss_dssp TEEE--GGGHHHHHHHHHHHHTT-S-SEEEE--HHHHHHHHS-BT-TTEEEEEEEETTSEEEEEEEEEEE
T ss_pred ccccCchhhHHHHHHHHHHHHHh-c-ccccccCHHHHHhhcccCC-CeEEEEEEecCCCceeeEEEEeec
Confidence 39999999999999987643322 1 1224579999999987631 1234555555 5688888888653
No 92
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=94.67 E-value=0.23 Score=27.57 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=33.0
Q ss_pred CceEEEEEcCe-EeEEEEeeeCCCC--------------------CCceeEEE-EEeCccccccChHHHHH
Q 042231 57 PWRRSICIYDR-SIGFVSIFPGSGD--------------------DRCRADIG-YAIAVKYWGHGIASKAV 105 (124)
Q Consensus 57 ~~~~~i~~~~~-~iG~~~l~~~~~~--------------------~~~~~~i~-~~i~~~~~gkG~g~~~~ 105 (124)
..++++.++++ +||++.+...+.. ....+|+| ++|+|+||++.....++
T Consensus 30 ~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 30 SVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred ccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 34555555444 9999998553221 12478999 77899999988776553
No 93
>PLN03239 histone acetyltransferase; Provisional
Probab=94.64 E-value=0.19 Score=34.25 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=31.9
Q ss_pred CeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 66 DRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 66 ~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
-.+||+.+=-+....+ ..++ +.+.|.||+||+|+-++....+..+.+
T Consensus 198 ~h~vGYFSKEK~s~~~---~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 198 FHPVGYYSKEKYSDVG---YNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred eEEEEEeeecccCCCC---CceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 3577887764433321 2455 444899999999999988877666544
No 94
>PTZ00064 histone acetyltransferase; Provisional
Probab=94.63 E-value=0.13 Score=36.59 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=32.5
Q ss_pred CeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHHHHhc
Q 042231 66 DRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 66 ~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
-.+||+.+=-+...++ ..++ +.+.|.||+||||+.++..-.+..+.+
T Consensus 369 ~HiVGYFSKEK~S~~~---nNLACILtLPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 369 CHIVGYFSKEKVSLLH---YNLACILTLPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred cEEEEEecccccCccc---CceEEEEecchhhhcchhhhhhhhhhhhhhhc
Confidence 3688887765544432 2455 444899999999999888877665443
No 95
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=94.18 E-value=0.87 Score=28.89 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=43.7
Q ss_pred ceEEEEE--cCeEeEEEEeeeCCC------------------CCCceeEEE-EEeCcccc---ccC----hHHHHHHHHH
Q 042231 58 WRRSICI--YDRSIGFVSIFPGSG------------------DDRCRADIG-YAIAVKYW---GHG----IASKAVKLAL 109 (124)
Q Consensus 58 ~~~~i~~--~~~~iG~~~l~~~~~------------------~~~~~~~i~-~~i~~~~~---gkG----~g~~~~~~l~ 109 (124)
..+++.. +|++||++-+.+... ....++|++ ++|+++++ +.+ +...++..++
T Consensus 53 ~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~ 132 (207)
T PRK13834 53 PTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGII 132 (207)
T ss_pred CEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHH
Confidence 3444444 789999998854211 123389999 88888753 222 5678999999
Q ss_pred HHHHhcccCccccc
Q 042231 110 NEVFKDFPDVLRLQ 123 (124)
Q Consensus 110 ~~~~~~~~~~~~i~ 123 (124)
+|+... |++.++
T Consensus 133 ~~a~~~--Gi~~~~ 144 (207)
T PRK13834 133 EWSMAN--GYTEIV 144 (207)
T ss_pred HHHHHC--CCCEEE
Confidence 999876 888765
No 96
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=94.01 E-value=0.51 Score=32.34 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=38.9
Q ss_pred CceEEEEE--cCeEeEEEEeeeCC----CCCCceeEEE-EEeCccccccChHHHHHHHHHHHH
Q 042231 57 PWRRSICI--YDRSIGFVSIFPGS----GDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 57 ~~~~~i~~--~~~~iG~~~l~~~~----~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
.++.++-. ++++|||++-.+.. ..-...++|. .+||++.|+|+++--+++++-.-+
T Consensus 134 ~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRv 196 (421)
T KOG2779|consen 134 EWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRV 196 (421)
T ss_pred ceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHh
Confidence 34445444 77999999864421 1112267777 578999999999999888876544
No 97
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.94 E-value=0.14 Score=36.13 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=32.1
Q ss_pred CeEeEEEEeeeCCCCCCceeEEEE-EeCccccccChHHHHHHHHHHHHHhc
Q 042231 66 DRSIGFVSIFPGSGDDRCRADIGY-AIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 66 ~~~iG~~~l~~~~~~~~~~~~i~~-~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
-.+||+.+=-+...++ ..++. .+.|.||+||+|+.++....+..+.+
T Consensus 291 ~h~vGyFSKEk~s~~~---~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 291 CHMVGYFSKEKHSEED---YNLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred cEEEEEecccccCcCC---CceEEEEecchhhhcchhheehhheehhhhcc
Confidence 3688987765544432 24554 44899999999998888776655443
No 98
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=93.79 E-value=0.14 Score=30.83 Aligned_cols=101 Identities=10% Similarity=-0.048 Sum_probs=55.7
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHH-hcC-CC--------CceEEEEEcCeEeEEEEee
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKD-VCI-PH--------PWRRSICIYDRSIGFVSIF 75 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--------~~~~~i~~~~~~iG~~~l~ 75 (124)
....|||..++|.+....+-.. . ++.+.-...+.+.. .+. .+ ...+.-+..+.+||.+.-+
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea~-------~--FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs 80 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEAS-------E--FPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGS 80 (190)
T ss_pred ccccCCCCChHHHHHHhccccc-------c--CChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcc
Confidence 3567899999998877665321 1 12222222222222 111 01 0111111278899987765
Q ss_pred eCCCC-------------CCceeEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 042231 76 PGSGD-------------DRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 76 ~~~~~-------------~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
.++.. ....+--...|+|+||.+|+|+.++..-+++.-++
T Consensus 81 ~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q 133 (190)
T KOG4144|consen 81 LWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQ 133 (190)
T ss_pred cCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcC
Confidence 54331 11123333567999999999999998877766544
No 99
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.77 E-value=0.062 Score=40.15 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=23.0
Q ss_pred EEeCccccccChHHHHHHHHHHHHH
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVF 113 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~ 113 (124)
+.++|+++++|||+.+++.+.+++.
T Consensus 537 IAvhPe~q~~GiGsrlL~~l~~~a~ 561 (758)
T COG1444 537 IAVHPELQRMGIGSRLLALLIEEAR 561 (758)
T ss_pred EEeCHHHHhcCHHHHHHHHHHHHHh
Confidence 5669999999999999999999985
No 100
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.65 E-value=0.08 Score=39.34 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=26.1
Q ss_pred EEEEeCccccccChHHHHHHHHHHHHHhcc
Q 042231 87 IGYAIAVKYWGHGIASKAVKLALNEVFKDF 116 (124)
Q Consensus 87 i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~ 116 (124)
+.+.++|+|++-|||+++++.+.+|...+.
T Consensus 618 VRIAvhP~y~~MGYGsrAvqLL~~y~eG~~ 647 (1011)
T KOG2036|consen 618 VRIAVHPEYQKMGYGSRAVQLLTDYFEGKF 647 (1011)
T ss_pred EEEEeccchhccCccHHHHHHHHHHHhccC
Confidence 457789999999999999999999986553
No 101
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=92.19 E-value=1.8 Score=26.89 Aligned_cols=64 Identities=6% Similarity=0.105 Sum_probs=42.6
Q ss_pred ceEEEE-EcCeEeEEEEeeeCCC------------------CCCceeEEE-EEeCccccc------cChHHHHHHHHHHH
Q 042231 58 WRRSIC-IYDRSIGFVSIFPGSG------------------DDRCRADIG-YAIAVKYWG------HGIASKAVKLALNE 111 (124)
Q Consensus 58 ~~~~i~-~~~~~iG~~~l~~~~~------------------~~~~~~~i~-~~i~~~~~g------kG~g~~~~~~l~~~ 111 (124)
-.|++. .+|+++|.+.+.+... ....+.|+. ++++++-.+ .-+..+++.++++|
T Consensus 45 ~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~ 124 (182)
T PF00765_consen 45 AVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEF 124 (182)
T ss_dssp -EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHH
Confidence 344443 4999999999987322 113378888 777776322 24677899999999
Q ss_pred HHhcccCccccc
Q 042231 112 VFKDFPDVLRLQ 123 (124)
Q Consensus 112 ~~~~~~~~~~i~ 123 (124)
+.+. |++.++
T Consensus 125 a~~~--gi~~~v 134 (182)
T PF00765_consen 125 ALSN--GIRHIV 134 (182)
T ss_dssp HHCT--T-SEEE
T ss_pred HHHC--CCCEEE
Confidence 9887 888775
No 102
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=91.90 E-value=1.3 Score=24.67 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=33.1
Q ss_pred EEEEcCeEeEEEEeeeCCCCCCceeEEE-EEeCccccccChHHHHHHHHHHH
Q 042231 61 SICIYDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNE 111 (124)
Q Consensus 61 ~i~~~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~ 111 (124)
.++.++..=|.+.+.+..+ ...+.++ +.+.++.||.|+|..++.++.+.
T Consensus 13 ~~y~~e~y~~~aivt~~~~--~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d 62 (99)
T cd04265 13 TIYLSEGYNAAAIVTNEEV--DGVPYLDKFAVSSSAQGEGTGEALWRRLRRD 62 (99)
T ss_pred EEEEeCCCcEEEEEeccCC--CCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 3333444555555555321 1266777 78899999999999999988754
No 103
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=91.86 E-value=0.35 Score=33.21 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=36.0
Q ss_pred eEeEEEEeeeCCCC-CCceeEEE-EEeCccccccChHHHHHHHHHHHHHhcccCccc
Q 042231 67 RSIGFVSIFPGSGD-DRCRADIG-YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLR 121 (124)
Q Consensus 67 ~~iG~~~l~~~~~~-~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~ 121 (124)
.++|+..++..... .+..+-++ +.|.|.|||+|+|+.+++.+....... |.+-.
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~D 254 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLD 254 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeE
Confidence 36677777665443 22245555 566999999999999999999544343 35433
No 104
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=91.57 E-value=3 Score=28.22 Aligned_cols=102 Identities=8% Similarity=-0.126 Sum_probs=63.8
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEE-EcCeEeEEEEeeeCCCCCCceeE
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSIC-IYDRSIGFVSIFPGSGDDRCRAD 86 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~~~~~~~~~~ 86 (124)
++++. .+|++.+++++...-... + .+..+.+.++..+..+.. ....+++. .+|++||.+.+..... ..
T Consensus 152 v~v~~--~~~l~~F~~l~~~t~~r~--g-~p~~~~~~f~~l~~~~~~-~~~l~~a~~~~g~~va~~l~~~~~~----~~- 220 (330)
T TIGR03019 152 LTVTV--DGDLDRFYDVYAENMRDL--G-TPVFSRRYFRLLKDVFGE-DCEVLTVRLGDGVVASAVLSFYFRD----EV- 220 (330)
T ss_pred eEEEE--CCcHHHHHHHHHHHHhcC--C-CCCCCHHHHHHHHHhccc-CEEEEEEEeCCCCEEEEEEEEEeCC----EE-
Confidence 55554 456888888776433322 2 234667777766665532 33334445 3888887655544211 22
Q ss_pred EEEEe--CccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 87 IGYAI--AVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 87 i~~~i--~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
..++. ++++++.+-+..+.-.+++++.++ |++.+
T Consensus 221 ~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~--G~~~f 256 (330)
T TIGR03019 221 LPYYAGGLREARDVAANDLMYWELMRRACER--GLRVF 256 (330)
T ss_pred EEEeccChHHHHhhChHHHHHHHHHHHHHHC--CCcEE
Confidence 22333 688999999999999999999887 77653
No 105
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=91.05 E-value=0.18 Score=34.25 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCceEEEEE---cC--eEeEEEEeeeCCCCCCceeEEEEEe-CccccccChHHHHHHHH
Q 042231 56 HPWRRSICI---YD--RSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGHGIASKAVKLA 108 (124)
Q Consensus 56 ~~~~~~i~~---~~--~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gkG~g~~~~~~l 108 (124)
+++.|.+.. +. .+||+.+=-.....+ ..++..+ .|.||++|+|+-+++.-
T Consensus 232 DpflFYvl~~~~~~~~h~vGyFSKEK~S~~~---yNLaCILtLP~yQRrGYG~lLIdFS 287 (395)
T COG5027 232 DPFLFYVLTERGDTGCHLVGYFSKEKESEQD---YNLACILTLPPYQRRGYGKLLIDFS 287 (395)
T ss_pred cceEEEEEEEcCCcceeeeeeechhhccccc---CceEEEEecChhHhcccceEeeeee
Confidence 345544443 22 377887765544432 3455444 89999999997766543
No 106
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=90.83 E-value=0.27 Score=34.77 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred eEEEE-EeCccccccChHHHHHHHHHHHHHhc
Q 042231 85 ADIGY-AIAVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 85 ~~i~~-~i~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
+-|+- .+||+||+-|+|...+.++++|..+.
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~eR 273 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIER 273 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHHh
Confidence 44554 44999999999999999999999875
No 107
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=89.83 E-value=2.3 Score=28.48 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=37.3
Q ss_pred eEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHH----hc----CCC-CceEEEEE--cCeEeEEEEe
Q 042231 8 ITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKD----VC----IPH-PWRRSICI--YDRSIGFVSI 74 (124)
Q Consensus 8 i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~-~~~~~i~~--~~~~iG~~~l 74 (124)
+.+||++..|++.+.++......--. ..|.+.+.....+.. ++ ..+ .+.++.++ .|+++|...+
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~T---sLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI 76 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLT---SLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAI 76 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcc---cCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEE
Confidence 46899999999999998754332221 113444444443332 11 122 23444455 7999998776
No 108
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=89.48 E-value=0.57 Score=27.50 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=27.0
Q ss_pred EeCccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 90 AIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 90 ~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
.+...-||+|+|+++..-+.+++... |...++|
T Consensus 91 VVA~~aRGrG~aRalY~Dlf~~Ae~a--gy~~~tC 123 (167)
T COG3818 91 VVASRARGRGVARALYADLFSYAELA--GYPYLTC 123 (167)
T ss_pred EEEecccccchHHHHHHHHHHHHHhc--CCceEEE
Confidence 44788999999999999999999765 6666654
No 109
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=0.81 Score=29.47 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.8
Q ss_pred eeEEEEEeCccccccChHHHHHHHHHH
Q 042231 84 RADIGYAIAVKYWGHGIASKAVKLALN 110 (124)
Q Consensus 84 ~~~i~~~i~~~~~gkG~g~~~~~~l~~ 110 (124)
-|.+.|+|++.-|+.|.|.++++.+++
T Consensus 109 lcILDFyVheS~QR~G~G~~lfdyMl~ 135 (264)
T KOG4601|consen 109 LCILDFYVHESEQRSGNGFKLFDYMLK 135 (264)
T ss_pred ceEEEEEeehhhhhcCchHHHHHHHHH
Confidence 688999999999999999998877653
No 110
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=88.33 E-value=6.8 Score=27.35 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeeeCCCCCCceeEEEEEe
Q 042231 13 FKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFPGSGDDRCRADIGYAI 91 (124)
Q Consensus 13 ~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~i~~~i 91 (124)
+++++.+.++.++.+.-...+ + .+..+.+-+....+.+ .+...+++.. ++++||+.-+...+. .-.|-+.
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~-~-~~yLt~~FF~~l~~~m--~~~~~l~~A~~~g~~Va~aL~l~~~~-----~LyGRYw 280 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRW-G-RPYLTREFFEQLAETM--PEQVVLVVARRDGQPVAFALCLRGDD-----TLYGRYW 280 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-C-ChhhcHHHHHHHHHhC--cCCEEEEEEEECCeEEEEEEEEEeCC-----EEEEeee
Confidence 345566777777766555442 2 4456777777666664 2333333333 999999887766322 1233222
Q ss_pred --CccccccChHHHHHHHHHHHHHhcccCcccccC
Q 042231 92 --AVKYWGHGIASKAVKLALNEVFKDFPDVLRLQA 124 (124)
Q Consensus 92 --~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~a 124 (124)
..++.+..+ -.+.-..++||.++ |++++.+
T Consensus 281 G~~~~~~~LHF-e~cYYq~Ie~aI~~--Gl~~f~~ 312 (370)
T PF04339_consen 281 GCDEEIPFLHF-ELCYYQGIEYAIEH--GLRRFEP 312 (370)
T ss_pred cccccccCcch-HHHHHHHHHHHHHc--CCCEEEC
Confidence 333333321 23456788999988 8888753
No 111
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=88.30 E-value=5.2 Score=25.95 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=39.0
Q ss_pred CCceEEEEE-cCeEeEEEEeeeCCCCCCceeEEE--EEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 56 HPWRRSICI-YDRSIGFVSIFPGSGDDRCRADIG--YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 56 ~~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~i~--~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
+......+. |+++||...-.+...... ....+ ..+.|+++|.|+|-++-..=-+++... |+..+
T Consensus 45 GGlvlgAf~~dg~lVGls~G~pg~r~g~-~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~--G~tli 111 (266)
T COG3375 45 GGLVLGAFSADGRLVGLSYGYPGGRGGS-LYLYSHMLGVREEVKGSGLGVALKMKQRERALSM--GYTLI 111 (266)
T ss_pred CCeEEEEEcCCCcEEEEEeccCCcCCCc-eeeeeeehhccccccccchhhhhHHHHHHHHHhc--CeeeE
Confidence 444444455 779999766555211111 12222 345899999999988877766777655 66543
No 112
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=85.68 E-value=1.3 Score=30.49 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=45.0
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeeeC
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFPG 77 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~~ 77 (124)
-+|+++..|.+++.+++.+..-.-. ..+..+.|++++|+.-.- +-.+.|+++. +|.+-++++++..
T Consensus 262 G~R~me~kDvp~V~~Ll~~yl~qf~--la~~f~~eev~Hwf~p~e-~VV~syVvesp~g~ITDF~SFy~l 328 (421)
T KOG2779|consen 262 GLREMEEKDVPAVFRLLRNYLKQFE--LAPVFDEEEVEHWFLPRE-NVVYSYVVESPNGKITDFCSFYSL 328 (421)
T ss_pred CcccccccchHHHHHHHHHHHHhee--cccccCHHHhHhhccccc-ceEEEEEEECCCCcccceeeEEec
Confidence 4899999999999998765432222 234567888888876531 1233455555 8888899998663
No 113
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.06 E-value=8.9 Score=27.90 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=70.0
Q ss_pred CceEEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE-----cCeEeEEEEeeeCCCC
Q 042231 6 SRITLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI-----YDRSIGFVSIFPGSGD 80 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~iG~~~l~~~~~~ 80 (124)
.++.+++...-++..+.++.+...... ....-++.++++++..+ +....|.|-. |+-+||.+.+..-..
T Consensus 412 m~l~vs~~de~~i~RIsQLtqkTNQFn--lTtkRy~e~dV~~~~~~---~~~li~sv~l~DKfgDnGiigvviv~kk~~- 485 (574)
T COG3882 412 MRLTVSKFDEVNIPRISQLTQKTNQFN--LTTKRYNEEDVRQMQED---PNFLIFSVSLKDKFGDNGIIGVVIVEKKES- 485 (574)
T ss_pred EEEEEeeccccCcHHHHHHhhccccee--echhhhcHHHHHHHhhC---CCeEEEEEEeccccccCceEEEEEEEecCC-
Confidence 357788888889999888865433211 11223567777764443 2333444433 788999888877332
Q ss_pred CCceeEEEEEe-CccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 81 DRCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 81 ~~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
..+|.-++ .=+--||++=++++..+.+.+... |++.+.
T Consensus 486 ---~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~--gi~tir 524 (574)
T COG3882 486 ---EWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSE--GINTIR 524 (574)
T ss_pred ---eEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Ccceee
Confidence 45554333 456779999999999999999866 887664
No 114
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=80.45 E-value=1.9 Score=30.84 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=37.1
Q ss_pred cCeEeEEEEeeeCCCCCC------c------------eeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 65 YDRSIGFVSIFPGSGDDR------C------------RADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~------~------------~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.+.+||++.+........ . ..-+|-. ...+|.+|+|+++++.+..-+.+. +..+|
T Consensus 415 ~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~-~~~~QH~G~G~~L~~~AE~ia~ee--~~~ki 487 (515)
T COG1243 415 NDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKR-EDEWQHRGYGRELLEEAERIAREE--GAKKI 487 (515)
T ss_pred hhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccC-cchhhcccHHHHHHHHHHHHHHhh--ccccE
Confidence 366889999977554210 0 0112222 478999999999999999988776 55554
No 115
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=79.58 E-value=16 Score=24.44 Aligned_cols=62 Identities=15% Similarity=0.001 Sum_probs=38.5
Q ss_pred CCceEEEEE-cCeEeEEEEeeeCCCCCCceeEEEEEe-CccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 56 HPWRRSICI-YDRSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 56 ~~~~~~i~~-~~~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
+...+++.. +|+++|++.+.+....+ ...+.+.- +++ -=+|+-..++..+++.+.+. +++.|
T Consensus 179 ~~~~~~~~~~dgki~af~~~~~~~~~~--~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~--g~~~l 242 (299)
T PF09924_consen 179 GLRGFVARVADGKIVAFAIGSPLGGRD--GWSIDFEKADPD-APKGIYEFLNVEFAEHLKAE--GVEYL 242 (299)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEEEE-TT--EEEEEEEEE-TT--STTHHHHHHHHHHHHS--T--T--EE
T ss_pred CceEEEEEECCCcEEEEEEEEEccCCc--cEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhC--CceEE
Confidence 445566666 99999999998866311 44444444 333 45789999999999888755 65544
No 116
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=79.46 E-value=5 Score=29.74 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=52.7
Q ss_pred CceEEeeCCCCCHHHHHHHhCC--hhhhhhcCCCCCCCHHHHHHHHHHhcC-CCCceEEEEE-cCeEeEEEEeeeCCCCC
Q 042231 6 SRITLRQFKATDVDDFMLWAGD--EQVTRSLRWNTFTSGEEALTYIKDVCI-PHPWRRSICI-YDRSIGFVSIFPGSGDD 81 (124)
Q Consensus 6 ~~i~lr~~~~~d~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~iG~~~l~~~~~~~ 81 (124)
+-+.|||+...|.+.+..+... .+...++++...++... ...+--... ..+...++.+ ++++||+++-.---...
T Consensus 678 ~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~-d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F 756 (891)
T KOG3698|consen 678 MFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFAD-DNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLF 756 (891)
T ss_pred eeEeeccCccccHHHHHhhhhheeccCceeccCCCCCcccc-ccchhheeccChhheeeeecCCCceeEEeeeecccchh
Confidence 4478999999999998886532 11122222221111100 111111111 2233344444 88899998865422222
Q ss_pred CceeEEEEEe--Cccccc----cChHHHHHHHH
Q 042231 82 RCRADIGYAI--AVKYWG----HGIASKAVKLA 108 (124)
Q Consensus 82 ~~~~~i~~~i--~~~~~g----kG~g~~~~~~l 108 (124)
.+-++|.|.= ..+|+| -|=|++..+.+
T Consensus 757 ~rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~ 789 (891)
T KOG3698|consen 757 SRNFLITWKEKLKEKYRGLIEPIGSGKLTDEYI 789 (891)
T ss_pred hhceeeeeHHHHHHHhhccccccCCchhHHHHH
Confidence 3356776654 578888 45565555544
No 117
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=75.10 E-value=2.9 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCceeEEE-EEeCccccccChHHHHHHHHHH
Q 042231 81 DRCRADIG-YAIAVKYWGHGIASKAVKLALN 110 (124)
Q Consensus 81 ~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~ 110 (124)
+..++|+| |.+.|+.+|.|++..+ ..+..
T Consensus 82 DlLVaElGLygVRpDLEGlGi~hs~-r~m~P 111 (196)
T PF02474_consen 82 DLLVAELGLYGVRPDLEGLGISHSM-RVMYP 111 (196)
T ss_pred ceeEEEEEEEEeeccccccccchhh-hhhhh
Confidence 33489999 5669999999999875 34444
No 118
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=72.88 E-value=9.6 Score=20.87 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=25.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEE
Q 042231 32 RSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFV 72 (124)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~ 72 (124)
.|.....+.+.+.-++|.+...+.+-+.-++..+|++||-.
T Consensus 41 ~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 41 TYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp EEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred EEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecC
Confidence 44433334444667788888877666666777799999864
No 119
>PRK00756 acyltransferase NodA; Provisional
Probab=72.01 E-value=4 Score=25.11 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCceeEEE-EEeCccccccChHHHHHHHHHH
Q 042231 81 DRCRADIG-YAIAVKYWGHGIASKAVKLALN 110 (124)
Q Consensus 81 ~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~ 110 (124)
+-.++|+| |.+.|+..|.||+..+ ..+.-
T Consensus 82 DlLVaElGLygVRpDLEGlGi~~S~-r~m~P 111 (196)
T PRK00756 82 DLLVAELGLYGVRPDLEGLGIAHSI-RAMYP 111 (196)
T ss_pred ceeEEEeeeeeeccccccccchhhH-HHHHH
Confidence 33489999 5679999999998876 34443
No 120
>PRK09781 hypothetical protein; Provisional
Probab=71.65 E-value=12 Score=22.34 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=24.0
Q ss_pred eEEEEEe-CccccccChHHHHHHHHHHHHHhc
Q 042231 85 ADIGYAI-AVKYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 85 ~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
+.|.+.= ...||.+|+-.+++++.++...+-
T Consensus 19 ~DI~IA~~~St~W~~~IV~~LINQvLdege~f 50 (181)
T PRK09781 19 ADIRIARRESTSWHKDIVAELINQVLRCGAAL 50 (181)
T ss_pred ceeEEEecccccchHHHHHHHHHHHHhhhhhh
Confidence 4555555 479999999999999999876543
No 121
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=70.80 E-value=20 Score=21.55 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=47.0
Q ss_pred EEeeCCCCCHHHHHHHhC------ChhhhhhcCC---CCCCCHHHHHHHHHHhcCCCCceEEEE-EcCeEeEEEEeeeCC
Q 042231 9 TLRQFKATDVDDFMLWAG------DEQVTRSLRW---NTFTSGEEALTYIKDVCIPHPWRRSIC-IYDRSIGFVSIFPGS 78 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~~ 78 (124)
.+|++.+.|++.+-.+-- +|.+...-.- ....+.-.+..|+.. ..+.|+.. .++.+.|++--+...
T Consensus 2 ~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~R----sgHSFvA~~e~~~~~GfvLAQaVW 77 (161)
T PF09390_consen 2 RYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYER----SGHSFVAEDEGGELQGFVLAQAVW 77 (161)
T ss_dssp EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHC----CS--EEEE-ETTEEEEEEEEEEEE
T ss_pred cccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhc----cCCcEEEEccCCceeeeeehhHHh
Confidence 579999999999887521 2221111000 001122223344443 34445555 589999999887765
Q ss_pred CCCCceeEEEEEeCccccccChHHHHHHHHHHHHHh
Q 042231 79 GDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFK 114 (124)
Q Consensus 79 ~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~ 114 (124)
-.++.+..+.-.+.++-.......-++.++++-+.+
T Consensus 78 QGdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYD 113 (161)
T PF09390_consen 78 QGDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYD 113 (161)
T ss_dssp -SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhc
Confidence 555546666554444433444555555666555544
No 122
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=68.76 E-value=4.9 Score=27.87 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=25.3
Q ss_pred ccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 93 VKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 93 ~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.+||.+|+|+.+++.+...+.++. +..+|
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EH-gS~Ki 525 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEH-GSGKI 525 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhc-CCCce
Confidence 489999999999999999998887 76665
No 123
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=65.04 E-value=4.4 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=15.2
Q ss_pred EEEEcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccCh
Q 042231 61 SICIYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGI 100 (124)
Q Consensus 61 ~i~~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~ 100 (124)
++.++|++||-..+-+..... ..-.|-.+...|||+|+
T Consensus 319 F~lehGQ~vgrLvyE~m~~~P--~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 319 FILEHGQIVGRLVYERMAERP--ERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp EEEETT-EEEEEEEEEBSS------TTSS-----------
T ss_pred eeeeCCcEEEEEEehhhccCc--cccccccccccchhhhh
Confidence 444599999999997764432 22334457889999997
No 124
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=61.97 E-value=48 Score=22.56 Aligned_cols=95 Identities=7% Similarity=-0.025 Sum_probs=52.9
Q ss_pred EeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeE-EE
Q 042231 10 LRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRAD-IG 88 (124)
Q Consensus 10 lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~-i~ 88 (124)
+|++..=..+.+..++.+--..+|-...+....+...+++..... -.+..++..+|+|+++=-+...+...--..+ +.
T Consensus 157 v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~-l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D~iN 235 (298)
T PRK15312 157 VKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRH-LLFGHILYIEGIPCAFDIVLKSESQMNVYFDVPN 235 (298)
T ss_pred EEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCcEEEeccc
Confidence 455444444444555544444555322223367777777776522 2233455559999998777664332211111 23
Q ss_pred EEeCccccccChHHHHH
Q 042231 89 YAIAVKYWGHGIASKAV 105 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~ 105 (124)
-.+||++..-..|+-++
T Consensus 236 gG~Dpe~~~~spGSIL~ 252 (298)
T PRK15312 236 GAVKNECMPLSPGSILM 252 (298)
T ss_pred CccCcccccCCCccEEE
Confidence 34689999888888653
No 125
>PHA03005 sulfhydryl oxidase; Provisional
Probab=58.88 E-value=7.1 Score=21.44 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=14.7
Q ss_pred eCccccccChHHHHHHHHHH
Q 042231 91 IAVKYWGHGIASKAVKLALN 110 (124)
Q Consensus 91 i~~~~~gkG~g~~~~~~l~~ 110 (124)
++|.|||+|+=+-+...+-+
T Consensus 1 MdPk~WGra~W~vIFivi~k 20 (96)
T PHA03005 1 MNPKYWGRAIWTVIFIVISK 20 (96)
T ss_pred CCcchhhhhHHHHHHHHHHh
Confidence 47999999988777654443
No 126
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.00 E-value=57 Score=20.98 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=41.2
Q ss_pred eEEEE-E-cCeEeEEEEeeeCCC------------------CCCceeEEE-EEeCc-----cccccCh-HHHHHHHHHHH
Q 042231 59 RRSIC-I-YDRSIGFVSIFPGSG------------------DDRCRADIG-YAIAV-----KYWGHGI-ASKAVKLALNE 111 (124)
Q Consensus 59 ~~~i~-~-~~~~iG~~~l~~~~~------------------~~~~~~~i~-~~i~~-----~~~gkG~-g~~~~~~l~~~ 111 (124)
.|.+. . +|+++|++.+-+... ......|.+ |.+++ ...+.+. +.+++..+++|
T Consensus 53 ~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~ 132 (209)
T COG3916 53 VYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEY 132 (209)
T ss_pred eEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHH
Confidence 34444 3 999999999865221 122367777 55554 2233333 77888999999
Q ss_pred HHhcccCccccc
Q 042231 112 VFKDFPDVLRLQ 123 (124)
Q Consensus 112 ~~~~~~~~~~i~ 123 (124)
+... |+++|+
T Consensus 133 a~~~--G~~~Iv 142 (209)
T COG3916 133 ALAR--GITGIV 142 (209)
T ss_pred HHHc--CCceEE
Confidence 9876 888875
No 127
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=53.19 E-value=14 Score=15.60 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=9.1
Q ss_pred cChHHHHHHHHHHH
Q 042231 98 HGIASKAVKLALNE 111 (124)
Q Consensus 98 kG~g~~~~~~l~~~ 111 (124)
.|+|.+..+.+++|
T Consensus 17 pGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 17 PGIGPKTANAILSF 30 (30)
T ss_dssp TT-SHHHHHHHHHH
T ss_pred CCcCHHHHHHHHhC
Confidence 57787777777654
No 128
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=52.56 E-value=54 Score=20.27 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=45.5
Q ss_pred CHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCC-CCCCceeEEE-EEeCcc
Q 042231 17 DVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGS-GDDRCRADIG-YAIAVK 94 (124)
Q Consensus 17 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~-~~~~~~~~i~-~~i~~~ 94 (124)
|.+.|.+++.+.. ....+. ..++..... ..+.++.++..-|.+.+.+.. ......+.+. +.+.+.
T Consensus 33 d~~kL~~ll~~sf-------~~~~~v---~~yl~~l~~---~~~~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~ 99 (170)
T PF04768_consen 33 DLDKLRALLERSF-------GGKLDV---DHYLDRLNN---RLFKIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKS 99 (170)
T ss_dssp -HHHHHHHHHHHS-------TSSSBH---TTHHHHHHT---S-SEEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HH
T ss_pred CHHHHHHHHHhcc-------cccccH---HHHHHHhhc---cceEEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecch
Confidence 7777777665444 111222 234444311 223344456566666665422 2222367777 777999
Q ss_pred ccccChHHHHHHHHHH
Q 042231 95 YWGHGIASKAVKLALN 110 (124)
Q Consensus 95 ~~gkG~g~~~~~~l~~ 110 (124)
-||.|++--+..++.+
T Consensus 100 ~~g~gv~D~vf~~i~~ 115 (170)
T PF04768_consen 100 AQGSGVADNVFNAIRK 115 (170)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHH
Confidence 9999999999988854
No 129
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=52.13 E-value=77 Score=21.97 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=34.2
Q ss_pred cCeEeEEEEeeeC----CCCCCceeEEE-EEeCccccccChHHHHHHHHHHHH
Q 042231 65 YDRSIGFVSIFPG----SGDDRCRADIG-YAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 65 ~~~~iG~~~l~~~----~~~~~~~~~i~-~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
..++||+++-.+. ....-.+.++. .+|+++.|+|-+..-+++.+-.-+
T Consensus 142 t~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~ 194 (451)
T COG5092 142 TQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRA 194 (451)
T ss_pred cceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhh
Confidence 5599999986442 11112267777 478999999999988888776544
No 130
>PHA01733 hypothetical protein
Probab=51.74 E-value=13 Score=22.55 Aligned_cols=62 Identities=8% Similarity=-0.109 Sum_probs=34.4
Q ss_pred EEeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCce-EEEEEcCeEeEEEEeee
Q 042231 9 TLRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWR-RSICIYDRSIGFVSIFP 76 (124)
Q Consensus 9 ~lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~iG~~~l~~ 76 (124)
.+||.|.+|+..+..=..+.++.+...... +.. .+.......... +.+..+|+++|..+...
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~----~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~ 66 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH--SPL----ALHLSLDVSENVVAFVAPDGSLAGVAGLVE 66 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC--Ccc----cchhhhhccccceEEEecCCcEEEEecccc
Confidence 578999999877776334444443322111 111 222112222333 55555999999999886
No 131
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=51.08 E-value=1.4e+02 Score=24.56 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=39.2
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEEEEe-CccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
+|+++|++++.+... . ...+..+- +|+ -=.|+.-.++..++.++++. |++++
T Consensus 429 ~G~i~af~s~~p~~~--~-g~slDLMRr~pd-apnGvmE~L~~~l~~~~k~~--G~~~~ 481 (1094)
T PRK02983 429 DGQVVALLSFVPWGR--R-GLSLDLMRRSPD-APNGVIELMVAELALEAESL--GITRI 481 (1094)
T ss_pred CCeEEEEEEEeeeCC--C-CEEEEecccCCC-CCCCHHHHHHHHHHHHHHHc--CCCEE
Confidence 799999999998532 1 34454444 354 47899999999999999876 88765
No 132
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=49.71 E-value=29 Score=16.28 Aligned_cols=34 Identities=24% Similarity=0.131 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEee
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIF 75 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~ 75 (124)
..+..++.+.+.+. +.....+.. +++++|.++..
T Consensus 15 ~~~l~~~~~~~~~~---~~~~~~V~d~~~~~~G~is~~ 49 (57)
T PF00571_consen 15 DDSLEEALEIMRKN---GISRLPVVDEDGKLVGIISRS 49 (57)
T ss_dssp TSBHHHHHHHHHHH---TSSEEEEESTTSBEEEEEEHH
T ss_pred cCcHHHHHHHHHHc---CCcEEEEEecCCEEEEEEEHH
Confidence 45777777777764 455566664 99999998864
No 133
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=49.54 E-value=78 Score=21.22 Aligned_cols=102 Identities=8% Similarity=-0.042 Sum_probs=55.1
Q ss_pred EeeCCCCCHHHHHHHhCChhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCCCCceeE-EE
Q 042231 10 LRQFKATDVDDFMLWAGDEQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGDDRCRAD-IG 88 (124)
Q Consensus 10 lr~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~~~~~~-i~ 88 (124)
++++..=..+.+.+++.+--..+|- ......+...+++..... -.+..++..+|++|++=-+.......--..+ +.
T Consensus 129 v~~v~~~S~~Ela~iY~~Lf~~Rwg--~~~~~~~~l~e~f~~Lr~-~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iN 205 (264)
T PF07395_consen 129 VRPVSEFSPEELADIYIDLFQKRWG--FRCYGKEHLAEFFSELRH-MIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYIN 205 (264)
T ss_pred EEEHHHCCHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCeEEEeccc
Confidence 4444443444444444443334442 234566666677766521 2223455559999998777764333211111 22
Q ss_pred EEeCccccccChHHHHH----HHHHHHHHh
Q 042231 89 YAIAVKYWGHGIASKAV----KLALNEVFK 114 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~----~~l~~~~~~ 114 (124)
-.+||++..-..|+-++ +.+.++|.+
T Consensus 206 gG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~ 235 (264)
T PF07395_consen 206 GGYDPECRDFSPGSILMWLNIQDAWEYCRA 235 (264)
T ss_pred CccCcccccCCCccEEEEeeHHHHHHHHHH
Confidence 34589999999998763 444445533
No 134
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=48.89 E-value=55 Score=19.33 Aligned_cols=71 Identities=18% Similarity=0.025 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeeeCCCC---------------CCceeEEEEEe---CccccccCh
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFPGSGD---------------DRCRADIGYAI---AVKYWGHGI 100 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~---------------~~~~~~i~~~i---~~~~~gkG~ 100 (124)
..+..+...++-..+..+.+.++. .+|.+||+++=...+.+ +=.+++.-+.+ .|- |-
T Consensus 18 ~~~l~~l~~~~lpai~~~Q~~l~~-~~g~Pvaf~~WA~ls~e~e~~~l~~~~~l~~~dW~sG~rlWiiD~iAPf----G~ 92 (133)
T PF02794_consen 18 DWPLSDLEQLLLPAIKLGQYRLYS-EDGRPVAFCSWAFLSEEAEARYLEDPRSLSPEDWNSGDRLWIIDWIAPF----GH 92 (133)
T ss_pred cCcHHHHHHHHHHHHhhCcEEEEE-eCCeEEEEEEhhcCCHHHHHHHHcCCCCCCchhcCCCCeEEEEEEECCC----Cc
Confidence 356667777777666555555444 69999999985443221 11134433333 562 55
Q ss_pred HHHHHHHHHHHHHh
Q 042231 101 ASKAVKLALNEVFK 114 (124)
Q Consensus 101 g~~~~~~l~~~~~~ 114 (124)
++.++..+.+..|.
T Consensus 93 ~~~~~~~lr~~~fp 106 (133)
T PF02794_consen 93 ARAMVRDLRRNLFP 106 (133)
T ss_pred HHHHHHHHHhccCC
Confidence 77777777665443
No 135
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=48.70 E-value=3.3 Score=22.49 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.3
Q ss_pred EEeCccccccChHHHHH
Q 042231 89 YAIAVKYWGHGIASKAV 105 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~ 105 (124)
=.++.+||.+|+++-+.
T Consensus 81 E~~~d~ywrrGlasvl~ 97 (102)
T COG4001 81 EQMHDQYWRRGLASVLR 97 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678999999997654
No 136
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=47.67 E-value=1.2e+02 Score=22.74 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=37.5
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEEEEe--CccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIGYAI--AVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~~~i--~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+|+++|++++.+.... .+++..+ -..-==+|.--.+...++.+++++ |++++.
T Consensus 401 ~g~VvaFa~l~~~~~~----~~~SlDlMR~sp~ap~g~mdfLf~~li~~aKe~--G~~~fs 455 (538)
T COG2898 401 EGEVVAFANLMPTGGK----EGYSLDLMRRSPDAPNGTMDFLFSELILWAKEE--GYQRFS 455 (538)
T ss_pred CCCeEEEEeecccCCc----ceeEEEeeecCCCCCchHHHHHHHHHHHHHHHc--CCeEEe
Confidence 8889999999884332 2333333 122235789999999999999887 988763
No 137
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=46.64 E-value=55 Score=18.64 Aligned_cols=50 Identities=22% Similarity=0.180 Sum_probs=32.7
Q ss_pred EEEEcCeEeEEEEeeeCCCC---CCceeEEE-EEeCccccc-cChHHHHHHHHHH
Q 042231 61 SICIYDRSIGFVSIFPGSGD---DRCRADIG-YAIAVKYWG-HGIASKAVKLALN 110 (124)
Q Consensus 61 ~i~~~~~~iG~~~l~~~~~~---~~~~~~i~-~~i~~~~~g-kG~g~~~~~~l~~ 110 (124)
.++.++..=|.+.+....+. ....+.+. +.+.+.-|| .|++--+..++.+
T Consensus 13 ~~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 13 TVIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred EEEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH
Confidence 33345555555555543221 12356666 788999997 8999999998875
No 138
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=44.54 E-value=22 Score=14.14 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=11.9
Q ss_pred cChHHHHHHHHHHHH
Q 042231 98 HGIASKAVKLALNEV 112 (124)
Q Consensus 98 kG~g~~~~~~l~~~~ 112 (124)
.|+|.+..+.++++.
T Consensus 7 ~GiG~k~A~~il~~~ 21 (26)
T smart00278 7 PGIGPKTAEKILEAX 21 (26)
T ss_pred CCCCHHHHHHHHHhc
Confidence 588888888888754
No 139
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=43.41 E-value=62 Score=18.83 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=34.0
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEE------cCeEeEEEEeee
Q 042231 30 VTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICI------YDRSIGFVSIFP 76 (124)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~iG~~~l~~ 76 (124)
+..+.+..+..+.++.++-+...........+++. +|+-.|++-++.
T Consensus 25 vdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalIYd 77 (132)
T KOG3424|consen 25 VDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALIYD 77 (132)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeeeee
Confidence 33455666778999999999888876655544443 788889888876
No 140
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=43.16 E-value=38 Score=23.25 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=24.9
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhcc
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVFKDF 116 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~~~~ 116 (124)
..++.+++..|+|.++...+.+.+|..+
T Consensus 256 viV~Ea~~~~g~gaei~A~i~e~~f~~L 283 (324)
T COG0022 256 VIVHEAPKTGGIGAEIAALIAEEAFDYL 283 (324)
T ss_pred EEEEeccccCChHHHHHHHHHHHHHHhh
Confidence 4569999999999999999999999865
No 141
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=42.28 E-value=19 Score=23.08 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=17.3
Q ss_pred ccChHHHHHHHHHHHHHhc
Q 042231 97 GHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 97 gkG~g~~~~~~l~~~~~~~ 115 (124)
=||+|.+.+..++-|+++.
T Consensus 120 iKGIG~ETaDsILlYa~~r 138 (215)
T COG2231 120 IKGIGKETADSILLYALDR 138 (215)
T ss_pred cCCcchhhHHHHHHHHhcC
Confidence 4899999999999999886
No 142
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.37 E-value=67 Score=17.86 Aligned_cols=46 Identities=7% Similarity=-0.014 Sum_probs=25.5
Q ss_pred hhhhhhcCCCCCCCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEE
Q 042231 28 EQVTRSLRWNTFTSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVS 73 (124)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~ 73 (124)
+...+|.....+...+...++.....++.-+.-.|..++++||-..
T Consensus 44 ~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVaeGn 89 (106)
T COG4837 44 PFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAEGN 89 (106)
T ss_pred CcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEeecCC
Confidence 3334443332344555555666666554555556666899887543
No 143
>PHA00432 internal virion protein A
Probab=38.22 E-value=35 Score=20.33 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=10.5
Q ss_pred EEeeCCCCCHHHH
Q 042231 9 TLRQFKATDVDDF 21 (124)
Q Consensus 9 ~lr~~~~~d~~~l 21 (124)
.|||+|.+|+..+
T Consensus 2 ~I~paT~~di~~~ 14 (137)
T PHA00432 2 YIRQTTERDFDVF 14 (137)
T ss_pred ccccccHHHHHHc
Confidence 4788888888876
No 144
>PHA02100 hypothetical protein
Probab=38.13 E-value=42 Score=18.47 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=15.2
Q ss_pred ccChHHHHHHHHH-HHHHhcccCcc
Q 042231 97 GHGIASKAVKLAL-NEVFKDFPDVL 120 (124)
Q Consensus 97 gkG~g~~~~~~l~-~~~~~~~~~~~ 120 (124)
-+|||+..++.++ +|..+++ +.+
T Consensus 51 dqkIGRnaIReviVQYIl~EF-d~q 74 (112)
T PHA02100 51 VTGIGRQAIRSVIVQYISEEF-GTQ 74 (112)
T ss_pred cchhhHHHHHHHHHHHHHHHh-Ccc
Confidence 4677777776655 7777666 554
No 145
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=37.15 E-value=74 Score=19.19 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEE----------cCeEeEEEEeeeCCC
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSICI----------YDRSIGFVSIFPGSG 79 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~----------~~~~iG~~~l~~~~~ 79 (124)
..+.+-+.++.......-...+.+.. +++++|.+.+.-...
T Consensus 71 ~vS~e~A~~MA~~~~~~~~adi~lA~TG~aGP~~~~~~~~~G~v~iai~~~ 121 (154)
T PF02464_consen 71 AVSEEVARAMARGARKRFGADIGLAITGVAGPGGGTEGKPVGTVYIAIAYR 121 (154)
T ss_dssp SSSHHHHHHHHHHHHHTSS-SEEEEEEE--SSSS--SSS-TTEEEEEEEET
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEEeccCCCCcccCCcCceEEEEEEeC
Confidence 46777777776655443333333332 457888777755433
No 146
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=35.72 E-value=47 Score=20.80 Aligned_cols=34 Identities=6% Similarity=-0.153 Sum_probs=28.7
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
+.+-|+-+=-+.-++-+-++++++.+++ .+.++.
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl-~~d~Vf 138 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKL-HVDKVF 138 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhh-ccceEE
Confidence 4446787888889999999999999999 988874
No 147
>PHA00771 head assembly protein
Probab=35.38 E-value=98 Score=18.32 Aligned_cols=52 Identities=10% Similarity=-0.133 Sum_probs=35.6
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.|..=|.+-+....+- +.|..-..+|++||+-- ++-.++-+|+.++. .++.+
T Consensus 46 ~~~yeGivl~~eV~p~---~~ecHa~y~P~fRG~ya--~~~r~F~kwlL~Nt-~f~~v 97 (151)
T PHA00771 46 HGQFGGIVYYNEIQPL---TFDCHAMYLPEIRGFSK--EIGLAFWRYILTNT-TVQCV 97 (151)
T ss_pred cceeeeEEEEEEeeeE---EEEEEeeeCccccchhH--HHHHHHHHHHhcCC-ceeEE
Confidence 5555566555444332 56666677999999865 88888888988876 66543
No 148
>PF12342 DUF3640: Protein of unknown function (DUF3640) ; InterPro: IPR022101 This entry defines the N-terminal domain of the polyprotein of GB virus C; its function is not known.
Probab=35.11 E-value=15 Score=14.95 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=7.8
Q ss_pred eCccccccChH
Q 042231 91 IAVKYWGHGIA 101 (124)
Q Consensus 91 i~~~~~gkG~g 101 (124)
++.+-||+|..
T Consensus 12 vdkdqwG~gv~ 22 (26)
T PF12342_consen 12 VDKDQWGPGVH 22 (26)
T ss_pred hcccccCCCcC
Confidence 46777888854
No 149
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.00 E-value=82 Score=17.23 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=14.4
Q ss_pred CCCceEEEEE-cCeEeEEEEeee
Q 042231 55 PHPWRRSICI-YDRSIGFVSIFP 76 (124)
Q Consensus 55 ~~~~~~~i~~-~~~~iG~~~l~~ 76 (124)
.+.....+.+ +|+++|.++...
T Consensus 94 ~~~~~l~Vvd~~~~~~Givt~~d 116 (120)
T cd04641 94 ARVHRLVVVDENKRVEGIISLSD 116 (120)
T ss_pred cCccEEEEECCCCCEEEEEEHHH
Confidence 3445555555 588999988654
No 150
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=33.76 E-value=25 Score=22.43 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=19.0
Q ss_pred eeEEEEEeCccccccCh-HHHHHHHHHHHH
Q 042231 84 RADIGYAIAVKYWGHGI-ASKAVKLALNEV 112 (124)
Q Consensus 84 ~~~i~~~i~~~~~gkG~-g~~~~~~l~~~~ 112 (124)
...+.-.+.|+|||+|. |..+..+++...
T Consensus 103 ~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g 132 (207)
T PLN02331 103 ILNIHPALLPAFGGKGYYGIKVHKAVIASG 132 (207)
T ss_pred EEEEeCccccCCCCCCcccchHHHHHHHcC
Confidence 55566677899999984 455555555433
No 151
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=33.10 E-value=22 Score=18.17 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.7
Q ss_pred CccccccChHHH
Q 042231 92 AVKYWGHGIASK 103 (124)
Q Consensus 92 ~~~~~gkG~g~~ 103 (124)
+|+||++-+++-
T Consensus 53 hPqYrn~~iA~L 64 (67)
T PF03376_consen 53 HPQYRNQQIAAL 64 (67)
T ss_pred CchhcCHHHHHH
Confidence 588888877753
No 152
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=32.09 E-value=1.9e+02 Score=20.74 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=33.7
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEE-EEeCccccc-cChHHHHHHHHHHHH
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIG-YAIAVKYWG-HGIASKAVKLALNEV 112 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~-~~i~~~~~g-kG~g~~~~~~l~~~~ 112 (124)
.|.--|.+.+......+..+..+. +.|.++-+| -|++..+...+-+..
T Consensus 381 sgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~f 430 (495)
T COG5630 381 SGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEF 430 (495)
T ss_pred eccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhC
Confidence 566667777766433333366666 788999999 999999888776543
No 153
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=30.45 E-value=94 Score=16.59 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 41 SGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
+.+++.+.+.. .+.....+..+++++|.++...
T Consensus 76 ~l~~a~~~m~~---~~~~~l~Vv~~~~~~Gvvt~~d 108 (112)
T cd04625 76 SIDEVRRLMVE---RHLRYLPVLDGGTLLGVISFHD 108 (112)
T ss_pred CHHHHHHHHHH---cCCCeeeEEECCEEEEEEEHHH
Confidence 44444444443 2334445556899999988643
No 154
>PRK07758 hypothetical protein; Provisional
Probab=29.98 E-value=62 Score=17.99 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=15.3
Q ss_pred ccChHHHHHHHHHHHHHhcccCc
Q 042231 97 GHGIASKAVKLALNEVFKDFPDV 119 (124)
Q Consensus 97 gkG~g~~~~~~l~~~~~~~~~~~ 119 (124)
=+|+|++.++.+.+-+.+. |+
T Consensus 72 iknlGkKSL~EIkekL~E~--GL 92 (95)
T PRK07758 72 LHGMGPASLPKLRKALEES--GL 92 (95)
T ss_pred ccCCCHHHHHHHHHHHHHc--CC
Confidence 4788888888888766553 54
No 155
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=28.71 E-value=1.9e+02 Score=19.49 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=26.0
Q ss_pred eeEEEEEeCccccccChHHHHHHHHHHHHHhcccCccc
Q 042231 84 RADIGYAIAVKYWGHGIASKAVKLALNEVFKDFPDVLR 121 (124)
Q Consensus 84 ~~~i~~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~ 121 (124)
.+-+-|.|..+.-+-.=..++...+.+.+-+.+||+.|
T Consensus 186 ~Aki~fVvG~~np~~~~N~~fA~~l~~~~~~~yPGl~r 223 (268)
T PF07454_consen 186 YAKIMFVVGRDNPNWEKNLAFAKQLHAKLEKKYPGLSR 223 (268)
T ss_pred eeEEEEEEcCCCCCHHHHHHHHHHHHHHHHhHCCCccc
Confidence 67888888544333333455777788888888888764
No 156
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=28.59 E-value=1.2e+02 Score=19.27 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.5
Q ss_pred eEEEEE-cCeEeEEEEeee
Q 042231 59 RRSICI-YDRSIGFVSIFP 76 (124)
Q Consensus 59 ~~~i~~-~~~~iG~~~l~~ 76 (124)
.+++.. +++++|+.....
T Consensus 164 ~viVv~~ng~~vGVg~a~~ 182 (202)
T COG5270 164 EVIVVSENGRVVGVGIAKK 182 (202)
T ss_pred eEEEEecCCEEEEEEEEec
Confidence 444444 888888766655
No 157
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=26.66 E-value=2.1e+02 Score=19.47 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCceEEEEE-----cCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHH
Q 042231 38 TFTSGEEALTYIKDVCIPHPWRRSICI-----YDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
...+.++..+|+.......+...-+.. +|+.|=.+.+.......+....+.-.+|...| ++.+++..+++++
T Consensus 4 ~Y~~~~ei~~~l~~l~~~~p~~v~~~~iG~S~egR~I~~l~is~~~~~~k~~v~i~~giHarE~---i~~~~~l~~i~~L 80 (300)
T cd06246 4 QYHSLNEIYSWIEFITERHSDMLEKIHIGSSFEKRPLYVLKVSGKEQTAKNAIWIDCGIHAREW---ISPAFCLWFVGHA 80 (300)
T ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEecccCCCCCeEEEEEEeCCCCCCCCeEEEecccCccch---hhHHHHHHHHHHH
Confidence 356888999999988654443322222 77777666665432223335666667776665 4555554444443
No 158
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=25.86 E-value=1.2e+02 Score=16.13 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 41 SGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
+..++.+.+.. .+.....+..+++++|.++...
T Consensus 77 ~~~~~l~~~~~---~~~~~~~Vv~~~~~~Gvit~~d 109 (113)
T cd04623 77 TVDEAMALMTE---RRFRHLPVVDGGKLVGIVSIGD 109 (113)
T ss_pred cHHHHHHHHHH---cCCCEeEEEeCCEEEEEEEHHH
Confidence 44445444444 2334445555799999988643
No 159
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=25.68 E-value=1.5e+02 Score=17.49 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=16.5
Q ss_pred CCceEEEEEcCeEeEEEEeeeC
Q 042231 56 HPWRRSICIYDRSIGFVSIFPG 77 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~~ 77 (124)
.....-|..+|++||.+++...
T Consensus 71 ~GinlPI~~~g~~iGviGItG~ 92 (135)
T PF05651_consen 71 PGINLPIIFNGEVIGVIGITGE 92 (135)
T ss_pred cceeeeEEECCEEEEEEEEecC
Confidence 3344555669999999999874
No 160
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=25.65 E-value=37 Score=19.24 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=16.3
Q ss_pred CccccccChHHHHHHHHHHHHHhcccCccccc
Q 042231 92 AVKYWGHGIASKAVKLALNEVFKDFPDVLRLQ 123 (124)
Q Consensus 92 ~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i~ 123 (124)
.+..-++| -|+.+-+++++|.+.+ +++++.
T Consensus 31 p~~~~~~~-~K~~lvaLLElAee~L-~c~~vv 60 (108)
T PF02100_consen 31 PSSALGQG-SKESLVALLELAEEKL-GCSHVV 60 (108)
T ss_dssp SS---SS---SHHHHHHHHHHHHHH-----EE
T ss_pred CCcccccc-cHHHHHHHHHHhcCcC-CCCEEE
Confidence 34443444 7888899999998888 888764
No 161
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=25.05 E-value=1.7e+02 Score=21.37 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCc--eEEEEE-cCeEeEEEEeeeC
Q 042231 38 TFTSGEEALTYIKDVCIPHPW--RRSICI-YDRSIGFVSIFPG 77 (124)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~-~~~~iG~~~l~~~ 77 (124)
...|.+++..+++........ ..++.+ +++++|.+++...
T Consensus 147 ~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~L 189 (451)
T COG2239 147 EDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDL 189 (451)
T ss_pred cCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHH
Confidence 467888988888876653333 333344 7889999998663
No 162
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=2.1e+02 Score=18.66 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=38.1
Q ss_pred cCeEeEEEEeeeCCCCCCceeEEEEEe-CccccccChHHHHHHHHHHHHHhcc
Q 042231 65 YDRSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGHGIASKAVKLALNEVFKDF 116 (124)
Q Consensus 65 ~~~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gkG~g~~~~~~l~~~~~~~~ 116 (124)
+.+.||.+.+.....+.. .+-+.|.= ||..-..|.||..++.+-+.+...+
T Consensus 162 ea~~vgSvAi~~L~~~~~-~gllafgS~D~~hf~~gmGT~fL~~la~vl~~~L 213 (218)
T COG3159 162 EAKAVGSVAIVPLGSQAP-LGLLAFGSRDPRHFQPGMGTLFLRHLALVLARLL 213 (218)
T ss_pred cccccceeEEEEccCCCC-ceEEEecCCCccccCCCcchHHHHHHHHHHHHHH
Confidence 788899888877654322 56665555 7888899999999999987766543
No 163
>PRK03657 hypothetical protein; Validated
Probab=24.50 E-value=1.8e+02 Score=18.01 Aligned_cols=39 Identities=15% Similarity=-0.093 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEE----------cCeEeEEEEeeeC
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSICI----------YDRSIGFVSIFPG 77 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~----------~~~~iG~~~l~~~ 77 (124)
..+.+-+.++.......-...+.+.. +++++|.+.+...
T Consensus 83 avS~e~A~~MA~g~~~~~~aDiala~TG~AGP~g~~~~kpvGtV~iai~ 131 (170)
T PRK03657 83 AVSEAVVAEMATGAIERADADISIAISGYGGPEGGEDGTPAGTVWFAWN 131 (170)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeccccCCCCCCCCCCCeEEEEEEE
Confidence 46777777776655443333444443 2479997776553
No 164
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=24.38 E-value=80 Score=18.70 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=13.5
Q ss_pred ccccccChHHHHHHHHHH
Q 042231 93 VKYWGHGIASKAVKLALN 110 (124)
Q Consensus 93 ~~~~gkG~g~~~~~~l~~ 110 (124)
..|+|+||..+.+.-.-.
T Consensus 14 q~y~GkGYS~~FveN~d~ 31 (135)
T COG3543 14 QGYQGKGYSPAFVENYDA 31 (135)
T ss_pred eecccccCCHHHHHHHHH
Confidence 568999999887665443
No 165
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=24.00 E-value=66 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=20.1
Q ss_pred EEeCccccccChHHHHHHHHHHH
Q 042231 89 YAIAVKYWGHGIASKAVKLALNE 111 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~ 111 (124)
+|+.+.-|++|+++.++..+...
T Consensus 189 IWV~s~~Rr~gIAs~lldva~~~ 211 (257)
T KOG3014|consen 189 IWVSSLRRRKGIASLLLDVARCN 211 (257)
T ss_pred EEeehhhhhhhhHHHHHHHHHHh
Confidence 68899999999999999988743
No 166
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.68 E-value=56 Score=20.17 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=25.8
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhcccC
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVFKDFPD 118 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~~~~~~ 118 (124)
-.+.|+--..+++.++++.+.++..+++|+
T Consensus 116 kr~lPets~LavA~~vl~~l~~fv~e~~P~ 145 (165)
T PF08822_consen 116 KRVLPETSELAVAMEVLELLAAFVQERYPQ 145 (165)
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 356788899999999999999999888764
No 167
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=2.4e+02 Score=18.89 Aligned_cols=81 Identities=2% Similarity=-0.129 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCceEEEE-----EcCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHHH
Q 042231 38 TFTSGEEALTYIKDVCIPHPWRRSIC-----IYDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNEV 112 (124)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~~ 112 (124)
.+.+..+...++..-.......-... ..|++|..+........ .-.+=..-+|++..+++|+-++-.=|.++
T Consensus 127 ~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~dG---lSsVY~FydPd~s~~SLGt~~iL~~I~~a 203 (253)
T COG2935 127 SDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLPDG---LSSVYTFYDPDMSKRSLGTLSILDQIAIA 203 (253)
T ss_pred CCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeecccCc---ceeEEEEeCCChhhhcchHHHHHHHHHHH
Confidence 45677777666665322222211111 16778876655443222 22232333999999999999888878888
Q ss_pred HhcccCccccc
Q 042231 113 FKDFPDVLRLQ 123 (124)
Q Consensus 113 ~~~~~~~~~i~ 123 (124)
.+. |++.++
T Consensus 204 q~~--~l~yvY 212 (253)
T COG2935 204 QRL--GLPYVY 212 (253)
T ss_pred HHh--CCCeEE
Confidence 654 776553
No 168
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=23.47 E-value=1.2e+02 Score=20.64 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhcc
Q 042231 89 YAIAVKYWGHGIASKAVKLALNEVFKDF 116 (124)
Q Consensus 89 ~~i~~~~~gkG~g~~~~~~l~~~~~~~~ 116 (124)
+.+...|..-|+|.++...+.+-+|+.+
T Consensus 292 vtVe~~~p~~gigaei~A~i~E~~fdyL 319 (359)
T KOG0524|consen 292 VTVEEGWPQFGIGAEICAQIMENAFDYL 319 (359)
T ss_pred EEEeccccccchhHHHHHHHHHHHHhhh
Confidence 3557889999999999999999888765
No 169
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=23.44 E-value=1.3e+02 Score=16.02 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=21.9
Q ss_pred EEEE-cCeEeEEEEeeeCCCCCCceeEEEEEe-Ccccccc
Q 042231 61 SICI-YDRSIGFVSIFPGSGDDRCRADIGYAI-AVKYWGH 98 (124)
Q Consensus 61 ~i~~-~~~~iG~~~l~~~~~~~~~~~~i~~~i-~~~~~gk 98 (124)
-+.. +++.||.++-..+.+... ..|++.. .+++...
T Consensus 38 ~v~~~~g~~vG~vTS~~~sp~~~--~~Iala~v~~~~~~~ 75 (95)
T PF08669_consen 38 PVYDEDGKPVGRVTSGAYSPTLG--KNIALAYVDREYAEP 75 (95)
T ss_dssp EEEETTTEEEEEEEEEEEETTTT--EEEEEEEEEGGGGST
T ss_pred EEEECCCcEEeEEEEEeECCCCC--ceEEEEEECHHHcCC
Confidence 3444 899999998876655432 4566554 3444433
No 170
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=23.28 E-value=87 Score=15.24 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=7.4
Q ss_pred cChHHHHHHHHHHHH
Q 042231 98 HGIASKAVKLALNEV 112 (124)
Q Consensus 98 kG~g~~~~~~l~~~~ 112 (124)
+|+|.+..+.+++.+
T Consensus 44 ~Gig~~~a~~i~~~~ 58 (60)
T PF14520_consen 44 PGIGEKTAEKIIEAA 58 (60)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555555555443
No 171
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.23 E-value=61 Score=20.56 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=12.7
Q ss_pred cccChHHHHHHHHHH
Q 042231 96 WGHGIASKAVKLALN 110 (124)
Q Consensus 96 ~gkG~g~~~~~~l~~ 110 (124)
-|.|||++++..+-.
T Consensus 15 agaGIG~~~v~~La~ 29 (245)
T KOG1207|consen 15 AGAGIGKEIVLSLAK 29 (245)
T ss_pred ccccccHHHHHHHHh
Confidence 599999999988754
No 172
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=23.01 E-value=97 Score=15.46 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=11.9
Q ss_pred cChHHHHHHHHHHHHHhc
Q 042231 98 HGIASKAVKLALNEVFKD 115 (124)
Q Consensus 98 kG~g~~~~~~l~~~~~~~ 115 (124)
.|+|..+.+.+.+|..+.
T Consensus 41 ~gIG~~~A~si~~ff~~~ 58 (64)
T PF12826_consen 41 PGIGPKIAQSIYEFFQDP 58 (64)
T ss_dssp TT--HHHHHHHHHHHH-H
T ss_pred CCcCHHHHHHHHHHHCCH
Confidence 488888888888887654
No 173
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=22.68 E-value=2.2e+02 Score=18.35 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=19.0
Q ss_pred ceEEEEE-cCeEeEEEEeeeCCCC------CCceeEEEEEeC
Q 042231 58 WRRSICI-YDRSIGFVSIFPGSGD------DRCRADIGYAIA 92 (124)
Q Consensus 58 ~~~~i~~-~~~~iG~~~l~~~~~~------~~~~~~i~~~i~ 92 (124)
..|+|.. +|+++|..+=...... -....++++++.
T Consensus 125 R~YlV~~~~~~l~Gi~gr~~~~~~k~~C~iC~~~~~VsLf~a 166 (208)
T PF07299_consen 125 RKYLVYERDGKLVGIAGRFSPSNRKGMCSICNRHSEVSLFTA 166 (208)
T ss_dssp EEEEEEE-TS-EEEEEEEE-SS-EEEE-TTT-SEEEEEEEEE
T ss_pred cEEEEEEECCEEEEEEEecCCCCCCccccccCCCCcEEEEEE
Confidence 4555555 9999998765443221 112567777664
No 174
>PHA02324 hypothetical protein
Probab=22.55 E-value=40 Score=15.58 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=5.4
Q ss_pred CccccccC
Q 042231 92 AVKYWGHG 99 (124)
Q Consensus 92 ~~~~~gkG 99 (124)
.+.|||+|
T Consensus 39 kK~YRGQG 46 (47)
T PHA02324 39 KKPYRGQG 46 (47)
T ss_pred cCcccCCC
Confidence 36777776
No 175
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=22.51 E-value=27 Score=13.83 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=7.7
Q ss_pred EeeCCCCCHHHHHHH
Q 042231 10 LRQFKATDVDDFMLW 24 (124)
Q Consensus 10 lr~~~~~d~~~l~~~ 24 (124)
+-|+.++|+..+...
T Consensus 7 mmPMSPddy~~l~~~ 21 (23)
T PF12162_consen 7 MMPMSPDDYDELERM 21 (23)
T ss_dssp ---S-HHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHh
Confidence 457777777776654
No 176
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=22.46 E-value=1.4e+02 Score=16.06 Aligned_cols=21 Identities=10% Similarity=0.002 Sum_probs=14.1
Q ss_pred CCceEEEEEcCeEeEEEEeee
Q 042231 56 HPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 56 ~~~~~~i~~~~~~iG~~~l~~ 76 (124)
....+.+.++++++|.++...
T Consensus 97 ~~~~~~V~~~~~~~Gvv~~~d 117 (121)
T cd04584 97 RIGCLPVVEDGRLVGIITETD 117 (121)
T ss_pred CCCeEEEeeCCEEEEEEEHHH
Confidence 444455555799999988643
No 177
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.36 E-value=1.5e+02 Score=16.34 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=16.6
Q ss_pred HHHHhcCCCCceEEEEE-c-CeEeEEEEeee
Q 042231 48 YIKDVCIPHPWRRSICI-Y-DRSIGFVSIFP 76 (124)
Q Consensus 48 ~~~~~~~~~~~~~~i~~-~-~~~iG~~~l~~ 76 (124)
-+..+...+.....+++ + +.++|.++...
T Consensus 92 ~l~~m~~~~~~~lpVvd~~~~~~~G~it~~d 122 (126)
T cd04640 92 VVETLKASGRQHALVVDREHHQIRGIISTSD 122 (126)
T ss_pred HHHHHHHCCCceEEEEECCCCEEEEEEeHHH
Confidence 33333333444445555 4 68999998754
No 178
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.15 E-value=1.4e+02 Score=15.63 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 40 TSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
.+..++.+.+.. .+.....+..+++++|.++...
T Consensus 68 ~~l~~~~~~~~~---~~~~~~~Vv~~~~~~G~it~~~ 101 (105)
T cd04599 68 ASLLEAKRLMEE---KKIERLPVLRERKLVGIITKGT 101 (105)
T ss_pred CCHHHHHHHHHH---cCCCEeeEEECCEEEEEEEHHH
Confidence 344444444443 2344455556799999988654
No 179
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=22.05 E-value=88 Score=20.77 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=26.7
Q ss_pred EeCccccccChHHHHHHHHHHHHHhcccCcccc
Q 042231 90 AIAVKYWGHGIASKAVKLALNEVFKDFPDVLRL 122 (124)
Q Consensus 90 ~i~~~~~gkG~g~~~~~~l~~~~~~~~~~~~~i 122 (124)
.+-|.|-.-|++++++++-..|+-.++ |-+-|
T Consensus 150 r~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gI 181 (259)
T COG0623 150 RVVPNYNVMGVAKAALEASVRYLAADL-GKEGI 181 (259)
T ss_pred eecCCCchhHHHHHHHHHHHHHHHHHh-CccCe
Confidence 346999999999999999999998877 75543
No 180
>PHA01635 hypothetical protein
Probab=21.94 E-value=2.2e+02 Score=18.41 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=23.6
Q ss_pred ceEEEEE--cCeEeEEEEeeeCCCCCCceeEEEEEeCcccccc
Q 042231 58 WRRSICI--YDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGH 98 (124)
Q Consensus 58 ~~~~i~~--~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gk 98 (124)
+...+.. +++.|||+-.-+...-- ++.|.||.=.-+++||
T Consensus 105 YsLAV~~~~s~~~iGFVFslpP~svi-~vPEYGF~nLvs~~~r 146 (231)
T PHA01635 105 YSLAVLNPPSRYTIGFVFSLPPNSVI-HVPEYGFVNLVSLSGR 146 (231)
T ss_pred eeEEEEeCCCCCEEEEEEEeCCCCEE-Eccccceeeeeeecce
Confidence 3455554 77889998766543321 2566666555555554
No 181
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=21.70 E-value=1.5e+02 Score=15.90 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 40 TSGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
.+..++...+.. .+...+.+..+|+++|.++...
T Consensus 68 ~~l~~~~~~~~~---~~~~~~pVv~~~~~~Gvvt~~d 101 (105)
T cd04591 68 TSLEKVHQLFRK---LGLRHLLVVDEGRLVGIITRKD 101 (105)
T ss_pred CcHHHHHHHHHH---cCCCEEEEEECCeEEEEEEhhh
Confidence 345555554443 2333444446899999998754
No 182
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=21.69 E-value=89 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.5
Q ss_pred cChHHHHHHHHHHHHHhcccCcc
Q 042231 98 HGIASKAVKLALNEVFKDFPDVL 120 (124)
Q Consensus 98 kG~g~~~~~~l~~~~~~~~~~~~ 120 (124)
+|+|.+....++.++-+.+ ++.
T Consensus 121 pGVG~KTAnvVL~~l~~~~-~~~ 142 (177)
T TIGR03252 121 PGFGKQKAKIFLALLGKQL-GVT 142 (177)
T ss_pred CCCCHHHHHHHHHHHHHHh-CCC
Confidence 6999999999888887766 553
No 183
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.44 E-value=1.5e+02 Score=15.75 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 41 SGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
+..++.+.+.. .+.....+..+|+++|.++...
T Consensus 74 ~l~~~~~~~~~---~~~~~~~V~~~~~~~Gvvt~~d 106 (110)
T cd04595 74 PLSEVQELMVE---HDIGRVPVVEDGRLVGIVTRTD 106 (110)
T ss_pred cHHHHHHHHHH---cCCCeeEEEeCCEEEEEEEhHH
Confidence 34444444443 2333344445899999988654
No 184
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.36 E-value=1.5e+02 Score=15.78 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 41 SGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
+..++.+.+... +.....+.++|+++|.++...
T Consensus 78 ~l~~~~~~~~~~---~~~~~~Vv~~~~~~Gvit~~d 110 (114)
T cd04629 78 SIVDLAQLMLKA---KPKRYPVVDDGKLVGQISRRD 110 (114)
T ss_pred cHHHHHHHHHHh---CCCccCEEECCEEEEEEEHHH
Confidence 444444444442 333445555789999987643
No 185
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=21.11 E-value=1.6e+02 Score=16.35 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhc-C-C-CCceEEEEE-cCeEeEEEEeee
Q 042231 40 TSGEEALTYIKDVC-I-P-HPWRRSICI-YDRSIGFVSIFP 76 (124)
Q Consensus 40 ~~~~~~~~~~~~~~-~-~-~~~~~~i~~-~~~~iG~~~l~~ 76 (124)
.+.+++..|+.-.. . + ....|+++. +|.++|++-...
T Consensus 51 l~~e~a~~yl~Ge~i~~~~~~~G~vlv~~~g~~LG~gk~~g 91 (102)
T PF13636_consen 51 LDDEQALRYLRGEDIELDPPDKGWVLVTYEGFPLGWGKYVG 91 (102)
T ss_dssp ETCHHHHHHHCT--EE-SS--EEEEEEEECCCEEEEEEEET
T ss_pred CCHHHHHHHHcCCcccCCCCCCcEEEEEECCEeeEEEEeeC
Confidence 36678888887321 1 1 244555554 999999987743
No 186
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=20.96 E-value=57 Score=21.16 Aligned_cols=106 Identities=10% Similarity=0.153 Sum_probs=54.3
Q ss_pred ceEEeeCCCCCHHHHHHHhCCh------hhhhhcCCCCCCCHHHHHHHHHHhcC--CCCceEEEEEcCeEeEEEEeeeCC
Q 042231 7 RITLRQFKATDVDDFMLWAGDE------QVTRSLRWNTFTSGEEALTYIKDVCI--PHPWRRSICIYDRSIGFVSIFPGS 78 (124)
Q Consensus 7 ~i~lr~~~~~d~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~iG~~~l~~~~ 78 (124)
.+.+..-+-+|++.|..=+-+| ++..+-.+ ..-+.+++++++..... +....|++..+.+-=|...|....
T Consensus 103 ~L~i~~~~yeDLDEii~r~V~pm~~~v~~~~~h~kf-~~g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~ 181 (220)
T PF14633_consen 103 TLKIGGEEYEDLDEIIARHVEPMARNVEEMMNHRKF-KDGTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKP 181 (220)
T ss_dssp EEEETTEEESSHHHHHHHCHHHHHHHHHHHHCSTTE-ESS-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEES
T ss_pred EEEECCeEECCHHHHHHHHHHHHHHHHHHHHhCccc-cCCCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEc
Confidence 4556655567888877633322 22222111 12345556667665432 344556666666666766665543
Q ss_pred CCCCceeEEEEEeCc---cccccChHHHHHHHHHHHHHhc
Q 042231 79 GDDRCRADIGYAIAV---KYWGHGIASKAVKLALNEVFKD 115 (124)
Q Consensus 79 ~~~~~~~~i~~~i~~---~~~gkG~g~~~~~~l~~~~~~~ 115 (124)
..+.+.-...+.|.| .+|++-++ -+..|++|.+.+
T Consensus 182 ~~~~~~~~~~v~V~p~Gf~~r~~~f~--~~~~L~~~FK~~ 219 (220)
T PF14633_consen 182 NKNPRHEYWPVKVTPDGFRFRKQVFP--SLDRLINWFKKH 219 (220)
T ss_dssp STTS-EEEEEEEE-SSSEEETTEEES--SHHHHHHHHHHH
T ss_pred CCCCceEEeeEEEecCcEEEecccCC--CHHHHHHHHhhc
Confidence 333323333455543 56666666 467777777654
No 187
>COG3270 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=1.9e+02 Score=17.04 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHH-hc---CCCCceEEEEE-cCeEeEEEEee
Q 042231 40 TSGEEALTYIKD-VC---IPHPWRRSICI-YDRSIGFVSIF 75 (124)
Q Consensus 40 ~~~~~~~~~~~~-~~---~~~~~~~~i~~-~~~~iG~~~l~ 75 (124)
.+.+++++|+.- .+ .+.+..|+++. .+..+|++-..
T Consensus 72 Ld~e~a~~w~rG~dV~~~~~~~~g~viv~~~~~~lG~aK~v 112 (127)
T COG3270 72 LDEEEAREWMRGRDVEPQESGPAGWVIVKFQGNGLGLAKVV 112 (127)
T ss_pred eCHHHHHhhhcCCccccCCCCCCceEEEEECCcccceeeec
Confidence 578888888872 11 23344466665 88888887653
No 188
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=20.44 E-value=2.8e+02 Score=18.57 Aligned_cols=76 Identities=13% Similarity=-0.044 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCceE-EEEE--cCeEeEEEEeeeCCCCCCceeEEEEEeCccccccChHHHHHHHHHHH
Q 042231 35 RWNTFTSGEEALTYIKDVCIPHPWRR-SICI--YDRSIGFVSIFPGSGDDRCRADIGYAIAVKYWGHGIASKAVKLALNE 111 (124)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~--~~~~iG~~~l~~~~~~~~~~~~i~~~i~~~~~gkG~g~~~~~~l~~~ 111 (124)
.+..+++.++...|+........... .+-. +|+.|=.+.+..... .+....|.-.+|+.. -.|+.++..+++.
T Consensus 6 ay~~Pys~~~~~~~l~~~~~~~~v~~~~iG~S~eGR~i~~l~I~~~~~-~k~~V~i~a~iH~~E---~~g~~~~~~ll~~ 81 (263)
T cd06234 6 AYFAPYSYERHLALIARAQGAPDVRLEVLGQTVQGRDIDLLTFGEPGP-GKKKLWIIARQHPGE---TMAEWFMEGLLER 81 (263)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCeEEEEEEEcCCCCeEEEEEEccCCC-CCCEEEEECCCCCCc---HHHHHHHHHHHHH
Confidence 34457899999999998765432222 2212 777776666654222 233555555667654 4677777777776
Q ss_pred HHh
Q 042231 112 VFK 114 (124)
Q Consensus 112 ~~~ 114 (124)
+..
T Consensus 82 L~~ 84 (263)
T cd06234 82 LLD 84 (263)
T ss_pred Hhh
Confidence 654
No 189
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=20.39 E-value=1.5e+02 Score=15.51 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeee
Q 042231 40 TSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFP 76 (124)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~ 76 (124)
.+.+++...+.. .....+.+.+ +|+++|.++...
T Consensus 10 ~~~~~a~~~~~~---~~~~~~~v~d~~g~~~Giv~~~d 44 (106)
T cd04582 10 DPLSDALGLMDD---SDLRALTVVDADGQPLGFVTRRE 44 (106)
T ss_pred CcHHHHHHHHHh---cCCCEEEEECCCCCEEEEEeHHH
Confidence 355555554432 2333444444 789999998654
No 190
>KOG3383 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=61 Score=19.79 Aligned_cols=26 Identities=4% Similarity=0.027 Sum_probs=20.2
Q ss_pred ecCceEEeeCCCCCHHHHHHHhCChh
Q 042231 4 DLSRITLRQFKATDVDDFMLWAGDEQ 29 (124)
Q Consensus 4 ~~~~i~lr~~~~~d~~~l~~~~~~~~ 29 (124)
...++.|.|++++..+.++++-+.++
T Consensus 149 ~r~RLSi~pv~~eew~fi~eL~~~~e 174 (187)
T KOG3383|consen 149 RRPRLSIVPVEEEEWNFICELGNGFE 174 (187)
T ss_pred eccccceeecCHHHHHHHHHhccCCC
Confidence 34578899999999999988865443
No 191
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.13 E-value=1.6e+02 Score=15.59 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEE-cCeEeEEEEeee
Q 042231 39 FTSGEEALTYIKDVCIPHPWRRSICI-YDRSIGFVSIFP 76 (124)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iG~~~l~~ 76 (124)
..+.+++.+.+.. .+...+.+.+ +|+++|.++...
T Consensus 10 ~~~~~~~~~~~~~---~~~~~~~V~d~~~~~~G~v~~~~ 45 (110)
T cd04605 10 DASIKEAAKLMIE---ENINHLPVVDEDGRLVGIVTSWD 45 (110)
T ss_pred CCCHHHHHHHHHh---CCCceEEEECCCCcEEEEEeHHH
Confidence 4466776666644 2333444544 689999999644
No 192
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=20.10 E-value=1.6e+02 Score=15.56 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEEcCeEeEEEEeee
Q 042231 41 SGEEALTYIKDVCIPHPWRRSICIYDRSIGFVSIFP 76 (124)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~ 76 (124)
+..++...+.. .+.....+.++|+++|.++...
T Consensus 68 ~l~~a~~~~~~---~~~~~~~Vv~~~~~iGvit~~d 100 (104)
T cd04594 68 TAEEAWEVMMK---NKTRWCPVVDDGKFKGIVTLDS 100 (104)
T ss_pred CHHHHHHHHHH---cCcceEEEEECCEEEEEEEHHH
Confidence 44444444433 2333444445889999988644
No 193
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=20.07 E-value=81 Score=13.02 Aligned_cols=12 Identities=42% Similarity=0.482 Sum_probs=7.6
Q ss_pred cccChHHHHHHH
Q 042231 96 WGHGIASKAVKL 107 (124)
Q Consensus 96 ~gkG~g~~~~~~ 107 (124)
.|-|+.++++.+
T Consensus 16 kgpgi~kaal~a 27 (29)
T PF07442_consen 16 KGPGILKAALKA 27 (29)
T ss_pred cCchHHHHHHHh
Confidence 366777766654
No 194
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.05 E-value=1.6e+02 Score=15.65 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=13.4
Q ss_pred CCceEEEEE-cCeEeEEEEeee
Q 042231 56 HPWRRSICI-YDRSIGFVSIFP 76 (124)
Q Consensus 56 ~~~~~~i~~-~~~~iG~~~l~~ 76 (124)
+.....+++ +|+++|.++...
T Consensus 88 ~~~~~~Vvd~~g~~~Gvvt~~d 109 (113)
T cd04615 88 NISRLPVLDDKGKVGGIVTEDD 109 (113)
T ss_pred CCCeeeEECCCCeEEEEEEHHH
Confidence 334445554 679999987643
Done!